Query 044265
Match_columns 517
No_of_seqs 378 out of 1914
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 12:59:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044265.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044265hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07250 Glyoxal_oxid_N: Glyox 100.0 1.3E-47 2.7E-52 366.8 24.6 237 24-261 1-243 (243)
2 KOG4441 Proteins containing BT 100.0 1.1E-37 2.5E-42 336.8 27.0 269 30-368 283-568 (571)
3 KOG4441 Proteins containing BT 100.0 3.2E-35 6.9E-40 317.8 23.9 250 99-406 283-549 (571)
4 PHA02713 hypothetical protein; 100.0 8.8E-34 1.9E-38 307.4 23.1 236 70-356 273-543 (557)
5 cd02851 Galactose_oxidase_C_te 100.0 3.2E-34 7E-39 236.5 11.4 98 409-516 2-101 (101)
6 PF09118 DUF1929: Domain of un 100.0 4.2E-34 9E-39 236.5 8.2 97 413-515 1-98 (98)
7 PHA02713 hypothetical protein; 100.0 5E-32 1.1E-36 293.8 23.9 252 102-405 259-535 (557)
8 TIGR03547 muta_rot_YjhT mutatr 100.0 3.1E-30 6.8E-35 265.4 28.0 250 94-382 11-332 (346)
9 PRK14131 N-acetylneuraminic ac 100.0 1.1E-28 2.5E-33 256.3 27.6 279 81-403 19-368 (376)
10 PLN02153 epithiospecifier prot 100.0 1.3E-27 2.8E-32 245.5 29.9 295 7-382 4-325 (341)
11 PHA02790 Kelch-like protein; P 100.0 2.5E-28 5.4E-33 261.1 23.1 217 74-353 251-477 (480)
12 TIGR03548 mutarot_permut cycli 100.0 1.5E-26 3.3E-31 235.7 26.2 273 20-382 3-314 (323)
13 TIGR03547 muta_rot_YjhT mutatr 100.0 1.7E-26 3.6E-31 237.7 26.7 247 25-321 11-331 (346)
14 PLN02193 nitrile-specifier pro 100.0 6.5E-26 1.4E-30 241.9 31.3 299 25-381 114-453 (470)
15 PRK14131 N-acetylneuraminic ac 100.0 2.2E-26 4.7E-31 239.3 25.7 284 10-352 17-374 (376)
16 PHA03098 kelch-like protein; P 99.9 1.4E-26 3.1E-31 251.7 24.1 243 70-359 265-524 (534)
17 PHA02790 Kelch-like protein; P 99.9 1.7E-26 3.6E-31 247.1 23.0 206 28-294 268-476 (480)
18 PLN02193 nitrile-specifier pro 99.9 3.3E-24 7.2E-29 228.8 30.4 268 9-321 150-453 (470)
19 PHA03098 kelch-like protein; P 99.9 6.1E-25 1.3E-29 239.0 24.5 248 102-405 252-513 (534)
20 PLN02153 epithiospecifier prot 99.9 1.6E-23 3.5E-28 215.1 25.1 248 127-405 6-286 (341)
21 TIGR03548 mutarot_permut cycli 99.9 1.5E-22 3.3E-27 206.3 24.4 212 11-264 52-314 (323)
22 KOG4693 Uncharacterized conser 99.8 5.7E-19 1.2E-23 165.6 19.8 263 11-321 3-312 (392)
23 KOG4693 Uncharacterized conser 99.8 6E-18 1.3E-22 158.7 20.2 255 89-381 12-312 (392)
24 KOG0379 Kelch repeat-containin 99.6 1.5E-13 3.2E-18 147.0 23.1 258 19-374 58-333 (482)
25 KOG4152 Host cell transcriptio 99.4 3.3E-12 7.1E-17 129.6 16.7 268 9-321 16-342 (830)
26 KOG0379 Kelch repeat-containin 99.4 1.1E-11 2.4E-16 132.6 19.7 207 137-382 56-286 (482)
27 KOG1230 Protein containing rep 99.3 1.6E-10 3.5E-15 115.2 17.8 225 69-353 98-347 (521)
28 KOG4152 Host cell transcriptio 99.2 2.2E-10 4.9E-15 116.5 16.6 276 79-382 17-343 (830)
29 KOG1230 Protein containing rep 99.2 2.5E-10 5.4E-15 113.8 16.1 242 101-407 79-338 (521)
30 COG3055 Uncharacterized protei 99.1 3.8E-09 8.2E-14 104.2 19.6 263 84-383 30-361 (381)
31 PF07250 Glyoxal_oxid_N: Glyox 99.1 3.3E-09 7.1E-14 102.3 14.4 136 212-382 48-191 (243)
32 COG3055 Uncharacterized protei 98.9 4.7E-08 1E-12 96.6 16.7 220 10-265 70-361 (381)
33 PF13964 Kelch_6: Kelch motif 98.8 8.3E-09 1.8E-13 74.8 5.2 50 300-360 1-50 (50)
34 PF01344 Kelch_1: Kelch motif; 98.4 1.9E-07 4.2E-12 66.5 3.0 47 300-357 1-47 (47)
35 PF13964 Kelch_6: Kelch motif 98.3 9.1E-07 2E-11 64.0 5.1 46 91-142 2-50 (50)
36 smart00612 Kelch Kelch domain. 98.3 1E-06 2.2E-11 62.3 4.6 45 313-368 1-45 (47)
37 PF13418 Kelch_4: Galactose ox 98.1 2.4E-06 5.1E-11 61.4 3.3 48 300-357 1-48 (49)
38 smart00612 Kelch Kelch domain. 98.0 7.1E-06 1.5E-10 57.9 4.7 45 102-153 1-47 (47)
39 PF07646 Kelch_2: Kelch motif; 98.0 1.2E-05 2.7E-10 57.7 5.2 49 300-357 1-49 (49)
40 PF13415 Kelch_3: Galactose ox 98.0 1E-05 2.2E-10 58.1 4.8 48 311-367 1-48 (49)
41 PF01344 Kelch_1: Kelch motif; 97.7 1.9E-05 4.2E-10 56.0 2.6 43 91-139 2-47 (47)
42 PF13415 Kelch_3: Galactose ox 97.6 0.0001 2.2E-09 52.9 5.1 44 100-149 1-48 (49)
43 PF07646 Kelch_2: Kelch motif; 97.6 0.00017 3.8E-09 51.7 5.7 47 22-87 2-48 (49)
44 KOG0286 G-protein beta subunit 97.5 0.028 6E-07 54.8 21.5 251 71-381 79-336 (343)
45 PF13418 Kelch_4: Galactose ox 97.4 0.00037 8E-09 49.9 4.9 37 193-230 4-48 (49)
46 PLN02772 guanylate kinase 97.3 0.00055 1.2E-08 70.5 7.1 71 299-381 23-96 (398)
47 PRK11028 6-phosphogluconolacto 97.3 0.28 6E-06 49.9 27.8 139 71-218 59-205 (330)
48 PRK11138 outer membrane biogen 97.3 0.1 2.2E-06 54.7 24.1 240 70-379 131-384 (394)
49 cd00200 WD40 WD40 domain, foun 97.1 0.28 6E-06 46.7 27.0 134 70-223 32-170 (289)
50 TIGR03866 PQQ_ABC_repeats PQQ- 97.1 0.36 7.7E-06 47.4 26.5 135 70-224 54-193 (300)
51 TIGR03866 PQQ_ABC_repeats PQQ- 97.0 0.39 8.4E-06 47.1 28.1 133 70-223 12-150 (300)
52 PRK11138 outer membrane biogen 96.8 0.86 1.9E-05 47.7 26.5 260 26-379 64-343 (394)
53 PLN02772 guanylate kinase 96.7 0.0052 1.1E-07 63.4 8.3 70 90-163 24-97 (398)
54 COG4257 Vgb Streptogramin lyas 96.7 0.69 1.5E-05 45.2 22.6 220 71-363 85-319 (353)
55 KOG0315 G-protein beta subunit 96.6 0.24 5.2E-06 47.5 17.4 223 68-345 60-290 (311)
56 TIGR03300 assembly_YfgL outer 96.5 0.91 2E-05 47.0 23.4 244 70-380 116-370 (377)
57 KOG0315 G-protein beta subunit 96.4 1 2.2E-05 43.3 20.2 239 71-382 22-280 (311)
58 PRK11028 6-phosphogluconolacto 96.3 1.6 3.4E-05 44.3 28.0 137 70-220 13-158 (330)
59 KOG0310 Conserved WD40 repeat- 96.1 0.32 6.9E-06 50.6 16.8 207 68-324 89-302 (487)
60 KOG0286 G-protein beta subunit 96.1 1.6 3.5E-05 42.9 22.6 244 30-321 75-336 (343)
61 KOG0310 Conserved WD40 repeat- 96.0 0.51 1.1E-05 49.1 17.8 247 68-382 47-301 (487)
62 PF13854 Kelch_5: Kelch motif 95.7 0.022 4.7E-07 39.3 4.6 41 297-344 1-41 (42)
63 KOG0266 WD40 repeat-containing 95.7 3.7 8E-05 44.0 23.6 221 70-345 182-411 (456)
64 KOG0271 Notchless-like WD40 re 95.5 2.2 4.8E-05 43.4 19.4 52 70-124 138-189 (480)
65 KOG0279 G protein beta subunit 95.2 0.75 1.6E-05 44.9 14.6 139 70-223 86-227 (315)
66 TIGR01640 F_box_assoc_1 F-box 94.7 0.68 1.5E-05 44.5 13.4 139 70-220 71-230 (230)
67 PF08450 SGL: SMP-30/Gluconola 94.6 3.5 7.7E-05 39.8 18.1 75 70-158 23-102 (246)
68 PLN00181 protein SPA1-RELATED; 94.4 4.1 8.9E-05 46.9 21.1 237 92-382 486-730 (793)
69 KOG0296 Angio-associated migra 94.1 7.6 0.00017 39.4 19.0 137 70-226 87-228 (399)
70 PF14870 PSII_BNR: Photosynthe 93.8 4.3 9.4E-05 40.9 17.1 162 7-212 131-297 (302)
71 cd00200 WD40 WD40 domain, foun 93.6 6.6 0.00014 36.9 24.4 134 70-223 74-212 (289)
72 PF13854 Kelch_5: Kelch motif 93.5 0.071 1.5E-06 36.7 2.7 25 138-163 1-25 (42)
73 KOG0649 WD40 repeat protein [G 93.4 3.4 7.5E-05 39.7 14.4 126 70-217 137-273 (325)
74 PRK13684 Ycf48-like protein; P 93.4 11 0.00023 38.7 29.0 195 127-380 118-322 (334)
75 PF10282 Lactonase: Lactonase, 93.4 11 0.00023 38.7 21.1 148 70-221 16-177 (345)
76 KOG0271 Notchless-like WD40 re 93.2 0.63 1.4E-05 47.2 9.7 115 96-224 122-241 (480)
77 PF08450 SGL: SMP-30/Gluconola 93.2 4.4 9.6E-05 39.1 15.9 142 72-226 63-220 (246)
78 KOG0278 Serine/threonine kinas 93.2 2 4.3E-05 41.4 12.5 136 93-263 104-245 (334)
79 PTZ00421 coronin; Provisional 92.8 6.3 0.00014 42.7 17.6 140 70-224 149-296 (493)
80 PF10282 Lactonase: Lactonase, 92.5 14 0.0003 37.8 21.9 236 71-354 66-332 (345)
81 PF03089 RAG2: Recombination a 92.5 3.2 7E-05 40.8 13.1 180 136-377 82-281 (337)
82 KOG0266 WD40 repeat-containing 92.1 19 0.00041 38.5 24.6 234 95-405 165-411 (456)
83 PRK13684 Ycf48-like protein; P 92.0 12 0.00026 38.3 17.9 119 75-211 200-323 (334)
84 KOG2437 Muskelin [Signal trans 91.7 0.24 5.2E-06 51.9 4.8 114 19-162 258-395 (723)
85 TIGR03300 assembly_YfgL outer 91.0 21 0.00045 36.8 20.6 107 94-224 59-171 (377)
86 TIGR01640 F_box_assoc_1 F-box 91.0 6.4 0.00014 37.7 13.9 153 201-379 5-161 (230)
87 PF07893 DUF1668: Protein of u 90.9 6.1 0.00013 40.6 14.3 116 98-224 74-213 (342)
88 PTZ00421 coronin; Provisional 90.8 27 0.00059 37.8 24.2 117 95-224 81-204 (493)
89 COG4257 Vgb Streptogramin lyas 90.4 19 0.00042 35.5 16.2 143 71-232 126-274 (353)
90 KOG2437 Muskelin [Signal trans 90.3 0.43 9.4E-06 50.0 5.1 129 90-223 260-417 (723)
91 KOG0299 U3 snoRNP-associated p 90.2 26 0.00056 36.7 17.6 147 25-221 207-359 (479)
92 KOG0272 U4/U6 small nuclear ri 89.6 12 0.00027 38.7 14.7 185 88-322 260-452 (459)
93 PTZ00420 coronin; Provisional 89.4 38 0.00083 37.4 27.5 140 70-224 55-203 (568)
94 KOG0291 WD40-repeat-containing 89.3 41 0.00089 37.6 25.0 158 69-263 330-499 (893)
95 PF13360 PQQ_2: PQQ-like domai 89.1 20 0.00044 33.8 19.3 143 70-223 47-198 (238)
96 PLN00181 protein SPA1-RELATED; 88.9 50 0.0011 38.0 23.5 131 70-219 556-691 (793)
97 PRK01742 tolB translocation pr 88.8 35 0.00075 36.1 18.9 136 70-224 229-367 (429)
98 KOG0291 WD40-repeat-containing 88.7 13 0.00027 41.4 14.7 141 70-221 459-615 (893)
99 PF07893 DUF1668: Protein of u 88.4 15 0.00032 37.8 14.9 60 23-110 68-127 (342)
100 PTZ00420 coronin; Provisional 88.2 20 0.00042 39.6 16.3 135 70-221 149-296 (568)
101 COG1520 FOG: WD40-like repeat 88.1 35 0.00075 35.2 23.3 259 71-380 80-354 (370)
102 PRK03629 tolB translocation pr 87.8 40 0.00087 35.7 19.2 137 70-223 224-368 (429)
103 PF13360 PQQ_2: PQQ-like domai 87.5 26 0.00056 33.1 17.6 132 70-222 87-234 (238)
104 KOG0316 Conserved WD40 repeat- 86.8 9.4 0.0002 36.7 11.0 134 70-222 82-217 (307)
105 KOG2055 WD40 repeat protein [G 86.5 14 0.0003 38.8 12.9 129 70-220 281-419 (514)
106 PRK04792 tolB translocation pr 85.5 53 0.0012 35.0 17.8 137 70-223 243-387 (448)
107 PF13088 BNR_2: BNR repeat-lik 85.5 6.5 0.00014 38.5 10.2 122 8-157 143-275 (275)
108 PRK04792 tolB translocation pr 85.0 58 0.0013 34.7 19.4 92 69-169 286-377 (448)
109 KOG0278 Serine/threonine kinas 84.3 16 0.00034 35.5 11.3 128 100-263 155-288 (334)
110 PF13088 BNR_2: BNR repeat-lik 84.2 12 0.00026 36.6 11.4 130 72-206 137-275 (275)
111 KOG2055 WD40 repeat protein [G 84.0 33 0.00071 36.1 14.2 138 95-262 263-407 (514)
112 KOG0640 mRNA cleavage stimulat 84.0 28 0.0006 34.8 13.1 149 87-263 110-282 (430)
113 PRK03629 tolB translocation pr 83.7 45 0.00097 35.3 16.1 122 70-209 268-392 (429)
114 TIGR02800 propeller_TolB tol-p 83.4 60 0.0013 33.7 18.0 137 70-223 215-359 (417)
115 PLN00033 photosystem II stabil 82.8 67 0.0015 33.8 17.3 121 73-212 264-392 (398)
116 KOG0263 Transcription initiati 81.3 19 0.00042 39.9 12.1 107 95-219 541-650 (707)
117 PLN02919 haloacid dehalogenase 80.7 80 0.0017 37.7 18.1 119 95-222 745-892 (1057)
118 PRK02889 tolB translocation pr 79.5 88 0.0019 33.0 18.0 136 70-223 221-365 (427)
119 KOG0272 U4/U6 small nuclear ri 78.0 7.6 0.00016 40.1 7.3 87 71-169 285-372 (459)
120 PF14870 PSII_BNR: Photosynthe 77.5 84 0.0018 31.7 20.0 171 6-224 87-267 (302)
121 PRK05137 tolB translocation pr 77.4 1E+02 0.0022 32.6 19.3 136 70-222 227-370 (435)
122 KOG0306 WD40-repeat-containing 77.3 1.3E+02 0.0028 33.8 22.3 166 70-264 395-572 (888)
123 PF07433 DUF1513: Protein of u 76.2 47 0.001 33.4 12.2 159 196-378 10-180 (305)
124 KOG0263 Transcription initiati 75.1 17 0.00036 40.4 9.4 88 70-169 558-646 (707)
125 PRK00178 tolB translocation pr 74.2 1.2E+02 0.0026 31.9 16.2 85 69-162 267-351 (430)
126 KOG1036 Mitotic spindle checkp 74.1 1E+02 0.0022 30.9 14.9 148 63-226 112-270 (323)
127 PRK00178 tolB translocation pr 74.1 1.2E+02 0.0026 31.8 19.2 137 70-223 224-368 (430)
128 KOG0305 Anaphase promoting com 73.9 1.3E+02 0.0029 32.3 20.9 130 70-219 198-332 (484)
129 PRK04922 tolB translocation pr 73.4 1.3E+02 0.0028 31.8 18.1 137 70-223 229-373 (433)
130 KOG1036 Mitotic spindle checkp 73.1 77 0.0017 31.7 12.5 84 70-169 76-160 (323)
131 PRK05137 tolB translocation pr 73.0 1.3E+02 0.0028 31.7 19.5 84 69-161 270-353 (435)
132 PF12768 Rax2: Cortical protei 72.8 38 0.00083 33.8 10.7 96 9-133 25-128 (281)
133 KOG0289 mRNA splicing factor [ 72.7 52 0.0011 34.4 11.6 97 70-178 370-469 (506)
134 COG5184 ATS1 Alpha-tubulin sup 72.2 1.4E+02 0.003 31.8 19.1 39 73-111 90-133 (476)
135 KOG0646 WD40 repeat protein [G 70.2 1.3E+02 0.0029 31.7 14.0 54 97-163 89-145 (476)
136 PF12768 Rax2: Cortical protei 70.0 36 0.00077 34.0 9.8 59 70-133 17-79 (281)
137 KOG0296 Angio-associated migra 67.5 46 0.001 34.0 9.8 87 31-123 127-221 (399)
138 TIGR02800 propeller_TolB tol-p 65.3 1.7E+02 0.0038 30.2 19.2 91 70-169 259-349 (417)
139 PF06433 Me-amine-dh_H: Methyl 64.3 66 0.0014 32.9 10.4 134 70-226 119-285 (342)
140 PF03089 RAG2: Recombination a 63.2 25 0.00054 34.8 6.9 88 15-110 81-174 (337)
141 cd02849 CGTase_C_term Cgtase ( 62.9 65 0.0014 25.5 8.2 74 413-511 2-77 (81)
142 PRK04922 tolB translocation pr 62.8 2.1E+02 0.0045 30.2 17.9 97 70-175 273-372 (433)
143 KOG0279 G protein beta subunit 62.6 1.7E+02 0.0036 29.1 14.5 84 70-163 128-214 (315)
144 KOG0303 Actin-binding protein 62.1 44 0.00096 34.5 8.6 81 69-161 154-236 (472)
145 KOG0639 Transducin-like enhanc 61.7 26 0.00055 37.3 7.0 135 70-221 441-584 (705)
146 PF07433 DUF1513: Protein of u 61.6 1.1E+02 0.0023 30.9 11.3 85 70-161 29-120 (305)
147 PLN00033 photosystem II stabil 61.2 2.2E+02 0.0047 30.0 24.2 70 292-380 318-390 (398)
148 KOG0649 WD40 repeat protein [G 60.4 95 0.0021 30.2 10.0 49 70-122 179-235 (325)
149 PF08662 eIF2A: Eukaryotic tra 60.3 42 0.00091 31.3 7.9 79 70-160 84-162 (194)
150 PF00868 Transglut_N: Transglu 58.6 77 0.0017 27.1 8.5 75 422-502 28-115 (118)
151 KOG0300 WD40 repeat-containing 58.2 2E+02 0.0043 29.0 12.1 135 70-222 295-432 (481)
152 PLN02919 haloacid dehalogenase 58.0 1.2E+02 0.0026 36.3 12.8 65 94-169 808-885 (1057)
153 KOG0306 WD40-repeat-containing 57.4 3.3E+02 0.0072 30.8 17.2 137 70-220 435-582 (888)
154 PRK02889 tolB translocation pr 57.4 2.6E+02 0.0055 29.5 16.3 87 67-162 262-348 (427)
155 KOG0282 mRNA splicing factor [ 56.7 50 0.0011 34.9 8.1 134 71-222 324-466 (503)
156 PF15418 DUF4625: Domain of un 55.8 1.4E+02 0.003 26.1 9.8 86 412-502 13-114 (132)
157 PRK01742 tolB translocation pr 55.3 2.7E+02 0.006 29.3 21.1 54 307-381 339-392 (429)
158 KOG0308 Conserved WD40 repeat- 52.9 1.9E+02 0.004 32.1 11.8 213 30-317 35-261 (735)
159 TIGR02658 TTQ_MADH_Hv methylam 51.7 2.9E+02 0.0063 28.5 20.8 119 101-231 13-148 (352)
160 KOG0285 Pleiotropic regulator 51.4 2.9E+02 0.0064 28.4 21.0 136 70-223 174-312 (460)
161 COG2706 3-carboxymuconate cycl 50.9 2.9E+02 0.0063 28.3 13.0 93 70-169 216-318 (346)
162 TIGR02658 TTQ_MADH_Hv methylam 50.2 3.1E+02 0.0067 28.3 24.2 53 69-122 77-136 (352)
163 PRK02888 nitrous-oxide reducta 48.7 4.3E+02 0.0093 29.6 22.7 53 114-169 296-348 (635)
164 TIGR03075 PQQ_enz_alc_DH PQQ-d 47.6 1.1E+02 0.0024 33.5 9.6 81 71-158 81-171 (527)
165 KOG0643 Translation initiation 47.4 3E+02 0.0064 27.3 12.9 166 70-263 75-253 (327)
166 PF02239 Cytochrom_D1: Cytochr 46.5 3.5E+02 0.0077 28.0 14.9 278 70-406 59-350 (369)
167 KOG0639 Transducin-like enhanc 45.7 1.4E+02 0.0031 32.0 9.4 139 203-382 433-573 (705)
168 KOG1446 Histone H3 (Lys4) meth 45.2 3.4E+02 0.0073 27.3 16.3 164 71-261 82-251 (311)
169 cd00216 PQQ_DH Dehydrogenases 45.2 4.2E+02 0.0092 28.5 14.6 26 199-224 59-87 (488)
170 KOG3881 Uncharacterized conser 44.8 2.5E+02 0.0055 29.1 10.8 111 100-222 160-281 (412)
171 KOG0313 Microtubule binding pr 44.0 2.6E+02 0.0056 29.0 10.6 89 71-169 283-373 (423)
172 PF00400 WD40: WD domain, G-be 43.5 47 0.001 21.3 3.9 29 89-120 11-39 (39)
173 KOG0772 Uncharacterized conser 42.8 4.7E+02 0.01 28.3 14.7 75 308-407 372-449 (641)
174 KOG0641 WD40 repeat protein [G 42.2 3.2E+02 0.007 26.2 14.9 111 100-224 151-267 (350)
175 KOG0301 Phospholipase A2-activ 42.1 2.2E+02 0.0048 31.7 10.5 84 70-169 201-285 (745)
176 PF14583 Pectate_lyase22: Olig 41.9 2E+02 0.0043 30.1 9.8 77 9-109 226-302 (386)
177 KOG0641 WD40 repeat protein [G 41.5 3.3E+02 0.0071 26.2 17.2 36 366-405 237-274 (350)
178 KOG0646 WD40 repeat protein [G 41.4 4.6E+02 0.01 27.9 12.9 31 196-226 283-315 (476)
179 KOG0292 Vesicle coat complex C 41.1 6.4E+02 0.014 29.4 25.6 88 71-169 33-120 (1202)
180 COG0823 TolB Periplasmic compo 40.5 1.7E+02 0.0036 31.1 9.4 86 66-160 259-344 (425)
181 KOG1445 Tumor-specific antigen 40.3 82 0.0018 34.7 6.9 86 70-163 701-786 (1012)
182 PRK01029 tolB translocation pr 40.2 4.7E+02 0.01 27.6 13.0 59 94-160 331-389 (428)
183 TIGR02608 delta_60_rpt delta-6 40.0 22 0.00048 26.1 1.9 16 366-381 6-21 (55)
184 COG1520 FOG: WD40-like repeat 40.0 4.3E+02 0.0093 27.1 12.4 136 198-379 65-205 (370)
185 KOG0772 Uncharacterized conser 40.0 5.1E+02 0.011 28.1 12.4 109 137-262 312-429 (641)
186 PF13540 RCC1_2: Regulator of 39.4 48 0.001 20.7 3.2 17 24-40 9-26 (30)
187 COG3490 Uncharacterized protei 38.1 1.9E+02 0.0041 29.0 8.4 83 70-159 92-179 (366)
188 PF03088 Str_synth: Strictosid 38.1 90 0.0019 25.3 5.4 80 27-119 4-84 (89)
189 KOG0282 mRNA splicing factor [ 37.3 3.8E+02 0.0083 28.6 11.0 107 95-220 264-374 (503)
190 PF10342 GPI-anchored: Ser-Thr 37.1 2.1E+02 0.0045 22.6 10.1 72 421-503 7-78 (93)
191 cd00604 IPT_CGTD IPT domain (d 36.9 2E+02 0.0043 22.7 7.2 76 414-514 1-78 (81)
192 PRK01029 tolB translocation pr 35.2 2.2E+02 0.0047 30.2 9.4 60 69-133 351-410 (428)
193 KOG0276 Vesicle coat complex C 34.8 3.7E+02 0.0081 29.8 10.7 50 70-122 208-257 (794)
194 PF02239 Cytochrom_D1: Cytochr 34.2 1.7E+02 0.0037 30.4 8.2 87 70-169 17-105 (369)
195 KOG2106 Uncharacterized conser 34.2 2.2E+02 0.0047 30.7 8.7 83 69-163 222-308 (626)
196 TIGR03074 PQQ_membr_DH membran 33.2 1.9E+02 0.0042 33.2 9.0 83 68-158 640-741 (764)
197 PF08662 eIF2A: Eukaryotic tra 33.0 1E+02 0.0022 28.7 5.8 51 70-122 126-179 (194)
198 KOG0301 Phospholipase A2-activ 32.3 7.7E+02 0.017 27.7 19.2 86 70-169 36-127 (745)
199 PF07705 CARDB: CARDB; InterP 31.2 2.2E+02 0.0048 22.5 7.0 72 416-503 8-83 (101)
200 PF10633 NPCBM_assoc: NPCBM-as 30.3 1.2E+02 0.0027 23.3 5.0 69 424-502 2-74 (78)
201 PRK04043 tolB translocation pr 29.8 6.8E+02 0.015 26.4 14.2 81 70-159 214-295 (419)
202 KOG0295 WD40 repeat-containing 29.7 3.9E+02 0.0085 27.6 9.3 84 71-165 316-399 (406)
203 KOG0305 Anaphase promoting com 29.3 7.6E+02 0.016 26.7 18.7 202 70-321 240-452 (484)
204 KOG0318 WD40 repeat stress pro 28.9 5E+02 0.011 28.2 10.3 107 93-219 447-561 (603)
205 KOG0647 mRNA export protein (c 28.7 6.2E+02 0.014 25.5 10.5 48 69-122 94-145 (347)
206 cd00216 PQQ_DH Dehydrogenases 27.9 3.8E+02 0.0081 28.9 9.9 57 71-133 73-137 (488)
207 KOG0313 Microtubule binding pr 27.4 2.5E+02 0.0053 29.1 7.5 83 70-163 323-410 (423)
208 KOG0645 WD40 repeat protein [G 26.9 6.4E+02 0.014 25.1 16.1 107 101-221 27-138 (312)
209 PF10670 DUF4198: Domain of un 26.7 2.8E+02 0.006 25.7 7.7 68 420-503 144-211 (215)
210 KOG0316 Conserved WD40 repeat- 26.4 6.2E+02 0.013 24.7 14.7 136 70-223 40-178 (307)
211 COG3490 Uncharacterized protei 26.0 3.4E+02 0.0073 27.3 7.9 90 298-404 110-203 (366)
212 KOG0647 mRNA export protein (c 25.9 7E+02 0.015 25.2 11.7 130 70-221 51-187 (347)
213 COG2706 3-carboxymuconate cycl 25.7 7.4E+02 0.016 25.4 22.9 147 92-263 147-311 (346)
214 TIGR03437 Soli_cterm Solibacte 25.0 1.4E+02 0.003 28.5 5.2 37 477-516 179-215 (215)
215 KOG0289 mRNA splicing factor [ 24.8 8.6E+02 0.019 25.8 19.2 251 70-381 242-497 (506)
216 KOG2048 WD40 repeat protein [G 24.4 2.3E+02 0.005 31.4 7.1 88 66-163 222-311 (691)
217 PF03443 Glyco_hydro_61: Glyco 24.0 4.8E+02 0.01 24.9 8.7 77 422-501 64-155 (218)
218 KOG0303 Actin-binding protein 22.8 9E+02 0.02 25.4 11.3 53 70-122 196-249 (472)
219 KOG4328 WD40 protein [Function 21.8 9.9E+02 0.022 25.5 11.6 22 200-221 430-453 (498)
220 PF03178 CPSF_A: CPSF A subuni 21.6 6.6E+02 0.014 25.0 9.8 89 70-169 108-199 (321)
221 KOG2106 Uncharacterized conser 21.3 1.1E+03 0.023 25.7 14.0 51 67-121 265-315 (626)
222 KOG1523 Actin-related protein 21.1 6.8E+02 0.015 25.5 9.1 100 70-177 33-137 (361)
223 smart00155 PLDc Phospholipase 20.9 1.2E+02 0.0026 18.4 2.6 20 302-321 4-23 (28)
224 KOG0285 Pleiotropic regulator 20.5 9.7E+02 0.021 24.9 12.7 90 65-169 255-345 (460)
225 KOG0274 Cdc4 and related F-box 20.3 1.2E+03 0.025 25.7 11.8 140 63-226 307-449 (537)
226 KOG0284 Polyadenylation factor 20.1 9.1E+02 0.02 25.4 9.9 180 30-263 106-328 (464)
No 1
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=100.00 E-value=1.3e-47 Score=366.82 Aligned_cols=237 Identities=53% Similarity=0.968 Sum_probs=217.3
Q ss_pred eEEEEeeCCEEEEEeccCCCCCCcccCCCcccccccccccccCCcceEEEEECCCCCeEEccccCCCcccceeecCCCcE
Q 044265 24 MHTAVTRFNTVVLLDRTNIGPSRKMLGRGRCRLDRNDRALKRDCYAHSAILDLQTNQIRPLMILTDTWCSSGQILADGTV 103 (517)
Q Consensus 24 ~h~~ll~~gkv~~~gg~~~g~~~~~~~~G~~~~~~~~~~~~~d~~~~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l 103 (517)
||++|++++||+++++++.|+|++.|++|.|+.++.+.+.+.||.+++.+||+.|++++++...++.||+++++|+||++
T Consensus 1 mh~~~~~~~~v~~~d~t~~g~s~~~~~~~~c~~~~~~~~~~~d~~a~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~l 80 (243)
T PF07250_consen 1 MHMALLHNNKVIMFDRTNFGPSNISLPDGRCRDNPEDNALKFDGPAHSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRL 80 (243)
T ss_pred CeEeEccCCEEEEEeCCCcccccccCCCCccccCccccccccCceEEEEEEecCCCcEEeccCCCCCcccCcCCCCCCCE
Confidence 89999999999999999999999999999999999888899999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCCeEEEecCCCCCCCCceEeccCccccCcCccceeEEcCCCcEEEEcCCCCCceEEeCCC---CCceeccc
Q 044265 104 LQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVNGRWYGTDQILPDGSVIILGGKGANTVEYYPPR---NGAVSFPF 180 (517)
Q Consensus 104 ~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~~s~~~L~dG~v~vvGG~~~~~~E~yP~~---~~w~~~~~ 180 (517)
+++||+.+|.+.+++|+|+..+.+++|.+. ...|..+|||+++++|+||+|+|+||....++|+||.. ......++
T Consensus 81 l~tGG~~~G~~~ir~~~p~~~~~~~~w~e~-~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~ 159 (243)
T PF07250_consen 81 LQTGGDNDGNKAIRIFTPCTSDGTCDWTES-PNDMQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPF 159 (243)
T ss_pred EEeCCCCccccceEEEecCCCCCCCCceEC-cccccCCCccccceECCCCCEEEEeCcCCCcccccCCccCCCCceeeec
Confidence 999999989999999999954446899998 34699999999999999999999999999999999652 23335566
Q ss_pred hhhccccccCCCCceEEEccCCcEEEEECCceEEEeCCCCeEEEecCCCCCCCCCCCCCCceeeeec--c-cCccccEEE
Q 044265 181 LADVEDKQMDNLYPYVHLLPNGHLFIFANDKAVMYDYETNKIAREYPPLDGGPRNYPSAGSSAMLAL--E-GDFATAVIV 257 (517)
Q Consensus 181 l~~t~~~~~~~~yp~~~~~~~G~iyv~Gg~~~~~ydp~t~~w~~~~p~~p~~~r~~~~~g~~v~l~~--~-~~~~~gkI~ 257 (517)
|..+.+..+.++||++++++||+||+++++..++||++++++.+.+|.||++.|+||.+|++||||+ . .+++..+|+
T Consensus 160 l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~i~d~~~n~v~~~lP~lPg~~R~YP~sgssvmLPl~~~~~~~~~~evl 239 (243)
T PF07250_consen 160 LSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSIIYDYKTNTVVRTLPDLPGGPRNYPASGSSVMLPLTDTPPNNYTAEVL 239 (243)
T ss_pred chhhhccCccccCceEEEcCCCCEEEEEcCCcEEEeCCCCeEEeeCCCCCCCceecCCCcceEEecCccCCCCCCCeEEE
Confidence 7666666789999999999999999999999999999999997789999998999999999999999 4 578899999
Q ss_pred EEcC
Q 044265 258 VCGG 261 (517)
Q Consensus 258 v~GG 261 (517)
||||
T Consensus 240 vCGG 243 (243)
T PF07250_consen 240 VCGG 243 (243)
T ss_pred EeCC
Confidence 9998
No 2
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1.1e-37 Score=336.75 Aligned_cols=269 Identities=21% Similarity=0.278 Sum_probs=224.5
Q ss_pred eCCEEEEEeccCCCCCCcccCCCcccccccccccccCCcceEEEEECCCCCeEEccccCCCcccceeecCCCcEEEecCC
Q 044265 30 RFNTVVLLDRTNIGPSRKMLGRGRCRLDRNDRALKRDCYAHSAILDLQTNQIRPLMILTDTWCSSGQILADGTVLQTGGD 109 (517)
Q Consensus 30 ~~gkv~~~gg~~~g~~~~~~~~G~~~~~~~~~~~~~d~~~~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~v~GG~ 109 (517)
..++++++||.... +. ....+++|||.+++|..++.++..+|..++++.+|+||++||+
T Consensus 283 ~~~~l~~vGG~~~~--------~~-------------~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~ 341 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQ--------GQ-------------SLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGY 341 (571)
T ss_pred CCCeEEEECCCCCC--------Cc-------------ccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccc
Confidence 46889999997520 11 2346899999999999999999999999999999999999999
Q ss_pred CC---CCCeEEEecCCCCCCCCceEeccCccccCcCccceeEEcCCCcEEEEcCCCC----CceEEe-CCCCCceeccch
Q 044265 110 LD---GYKKIRKFSPCEANGLCDWVELDDVELVNGRWYGTDQILPDGSVIILGGKGA----NTVEYY-PPRNGAVSFPFL 181 (517)
Q Consensus 110 ~~---g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~~s~~~L~dG~v~vvGG~~~----~~~E~y-P~~~~w~~~~~l 181 (517)
+. ..+++++|||. +++|+.+ ++|+.+|..++++++ +|+||++||.++ .++|+| |.+++|...+.|
T Consensus 342 ~~~~~~l~~ve~YD~~----~~~W~~~--a~M~~~R~~~~v~~l-~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m 414 (571)
T KOG4441|consen 342 DSGSDRLSSVERYDPR----TNQWTPV--APMNTKRSDFGVAVL-DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPM 414 (571)
T ss_pred cCCCcccceEEEecCC----CCceecc--CCccCccccceeEEE-CCEEEEEeccccccccccEEEecCCCCcccccCCC
Confidence 83 36899999999 8999999 899999999999999 999999999986 479999 999999965433
Q ss_pred hhccccccCCCCceEEEccCCcEEEEEC--------CceEEEeCCCCeEEEecCCCCCCCCCCCCCCceeeeecccCccc
Q 044265 182 ADVEDKQMDNLYPYVHLLPNGHLFIFAN--------DKAVMYDYETNKIAREYPPLDGGPRNYPSAGSSAMLALEGDFAT 253 (517)
Q Consensus 182 ~~t~~~~~~~~yp~~~~~~~G~iyv~Gg--------~~~~~ydp~t~~w~~~~p~~p~~~r~~~~~g~~v~l~~~~~~~~ 253 (517)
...+ +.+.++..+|+||++|| +++|+|||.+|+|. .+|+|+. +|.+. |++++ +
T Consensus 415 ~~~r-------~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~-~~~~M~~-~R~~~--g~a~~--------~ 475 (571)
T KOG4441|consen 415 LTRR-------SGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWT-LIAPMNT-RRSGF--GVAVL--------N 475 (571)
T ss_pred Ccce-------eeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCcee-ecCCccc-ccccc--eEEEE--------C
Confidence 3222 44677788999999999 47999999999998 5999986 56654 55554 9
Q ss_pred cEEEEEcCCcCCcccccCCCCCCCCceeEEEecCCCCCceec-CCCcceeeeeeEEecCCcEEEEcCccCCCCCcccCCC
Q 044265 254 AVIVVCGGAQFGAFIQRSTDTPAHGSCGRIIATSADPTWEME-DMPFGRIMGDMVMLPTGDVLIINGAQAGTQGFEMASN 332 (517)
Q Consensus 254 gkI~v~GG~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W~~~-~m~~~R~~~~~v~lpdG~v~v~GG~~~g~~g~~~~~~ 332 (517)
++||++||.+. . ..+.++|+|||. +++|+.. +|+.+|..++.++ .++++|++||.+ |. .
T Consensus 476 ~~iYvvGG~~~-~--------~~~~~VE~ydp~--~~~W~~v~~m~~~rs~~g~~~-~~~~ly~vGG~~-~~-------~ 535 (571)
T KOG4441|consen 476 GKIYVVGGFDG-T--------SALSSVERYDPE--TNQWTMVAPMTSPRSAVGVVV-LGGKLYAVGGFD-GN-------N 535 (571)
T ss_pred CEEEEECCccC-C--------CccceEEEEcCC--CCceeEcccCccccccccEEE-ECCEEEEEeccc-Cc-------c
Confidence 99999999983 2 246779999998 7999998 8999999998555 599999999976 43 2
Q ss_pred CccccEEEeCCCCCCceeccCCCCCccccccceeee
Q 044265 333 PCLFPVLYRPTQPAGLRFMTLNPGTIPRMYHSTANL 368 (517)
Q Consensus 333 ~~~~~e~YdP~t~~g~~W~~~~~~~~~R~yhs~a~l 368 (517)
.+.++|+|||+++ +|+...++...|...+++++
T Consensus 536 ~l~~ve~ydp~~d---~W~~~~~~~~~~~~~~~~~~ 568 (571)
T KOG4441|consen 536 NLNTVECYDPETD---TWTEVTEPESGRGGAGVAVI 568 (571)
T ss_pred ccceeEEcCCCCC---ceeeCCCccccccCcceEEe
Confidence 3568999999999 99999888778877765554
No 3
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=3.2e-35 Score=317.76 Aligned_cols=250 Identities=19% Similarity=0.296 Sum_probs=206.3
Q ss_pred CCCcEEEecCCCC---CCCeEEEecCCCCCCCCceEeccCccccCcCccceeEEcCCCcEEEEcCCC-C----CceEEe-
Q 044265 99 ADGTVLQTGGDLD---GYKKIRKFSPCEANGLCDWVELDDVELVNGRWYGTDQILPDGSVIILGGKG-A----NTVEYY- 169 (517)
Q Consensus 99 ~dG~l~v~GG~~~---g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~~s~~~L~dG~v~vvGG~~-~----~~~E~y- 169 (517)
..+.|+++||... ..+++++|||. ++.|..+ ++|+.+|..++++++ +|+|||+||.+ + .++|+|
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~----~~~w~~~--a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD 355 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPK----TNEWSSL--APMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYD 355 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCC----cCcEeec--CCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEec
Confidence 4588999999873 36899999999 8899999 899999999999999 89999999998 3 479999
Q ss_pred CCCCCceeccchhhccccccCCCCceEEEccCCcEEEEECC-------ceEEEeCCCCeEEEecCCCCCCCCCCCCCCce
Q 044265 170 PPRNGAVSFPFLADVEDKQMDNLYPYVHLLPNGHLFIFAND-------KAVMYDYETNKIAREYPPLDGGPRNYPSAGSS 242 (517)
Q Consensus 170 P~~~~w~~~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~Gg~-------~~~~ydp~t~~w~~~~p~~p~~~r~~~~~g~~ 242 (517)
|.+++|...+.|...|. -+..+..+|+||++||. ++|+|||.+|+|. .+++|+. +|..+ |++
T Consensus 356 ~~~~~W~~~a~M~~~R~-------~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~-~va~m~~-~r~~~--gv~ 424 (571)
T KOG4441|consen 356 PRTNQWTPVAPMNTKRS-------DFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWT-PVAPMLT-RRSGH--GVA 424 (571)
T ss_pred CCCCceeccCCccCccc-------cceeEEECCEEEEEeccccccccccEEEecCCCCccc-ccCCCCc-ceeee--EEE
Confidence 99999997766654432 24666779999999994 5999999999998 5888875 45432 444
Q ss_pred eeeecccCccccEEEEEcCCcCCcccccCCCCCCCCceeEEEecCCCCCceec-CCCcceeeeeeEEecCCcEEEEcCcc
Q 044265 243 AMLALEGDFATAVIVVCGGAQFGAFIQRSTDTPAHGSCGRIIATSADPTWEME-DMPFGRIMGDMVMLPTGDVLIINGAQ 321 (517)
Q Consensus 243 v~l~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W~~~-~m~~~R~~~~~v~lpdG~v~v~GG~~ 321 (517)
++ +++||++||.+... ..++++++|||. +++|+.. +|+.+|.++++++ .+|+||++||.+
T Consensus 425 ~~--------~g~iYi~GG~~~~~--------~~l~sve~YDP~--t~~W~~~~~M~~~R~~~g~a~-~~~~iYvvGG~~ 485 (571)
T KOG4441|consen 425 VL--------GGKLYIIGGGDGSS--------NCLNSVECYDPE--TNTWTLIAPMNTRRSGFGVAV-LNGKIYVVGGFD 485 (571)
T ss_pred EE--------CCEEEEEcCcCCCc--------cccceEEEEcCC--CCceeecCCcccccccceEEE-ECCEEEEECCcc
Confidence 43 99999999987332 257899999998 7999998 9999999999655 599999999987
Q ss_pred CCCCCcccCCCCccccEEEeCCCCCCceeccCCCCCccccccceeeecCCCcEEEecCCCccccccCCCCCCceeeEEEe
Q 044265 322 AGTQGFEMASNPCLFPVLYRPTQPAGLRFMTLNPGTIPRMYHSTANLLPDGRVLIAGSNPHYFYKFNAEFPTELRIEAFS 401 (517)
Q Consensus 322 ~g~~g~~~~~~~~~~~e~YdP~t~~g~~W~~~~~~~~~R~yhs~a~ll~dG~V~v~GG~~~~~~~~~~~~~~~~~vE~y~ 401 (517)
+. ....++|.|||+++ +|+.+++|+.+|..+++++ .++++|+.||.+.. .+ ..+||+|+
T Consensus 486 -~~-------~~~~~VE~ydp~~~---~W~~v~~m~~~rs~~g~~~--~~~~ly~vGG~~~~------~~--l~~ve~yd 544 (571)
T KOG4441|consen 486 -GT-------SALSSVERYDPETN---QWTMVAPMTSPRSAVGVVV--LGGKLYAVGGFDGN------NN--LNTVECYD 544 (571)
T ss_pred -CC-------CccceEEEEcCCCC---ceeEcccCccccccccEEE--ECCEEEEEecccCc------cc--cceeEEcC
Confidence 42 23456999999999 9999999999999988665 49999999996543 22 56899999
Q ss_pred CCccC
Q 044265 402 PEYLS 406 (517)
Q Consensus 402 P~yl~ 406 (517)
|..=.
T Consensus 545 p~~d~ 549 (571)
T KOG4441|consen 545 PETDT 549 (571)
T ss_pred CCCCc
Confidence 88743
No 4
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=8.8e-34 Score=307.45 Aligned_cols=236 Identities=13% Similarity=0.150 Sum_probs=191.8
Q ss_pred eEEEEECCCCCeEEccccCCCcccceeecCCCcEEEecCCCC---CCCeEEEecCCCCCCCCceEeccCccccCcCccce
Q 044265 70 HSAILDLQTNQIRPLMILTDTWCSSGQILADGTVLQTGGDLD---GYKKIRKFSPCEANGLCDWVELDDVELVNGRWYGT 146 (517)
Q Consensus 70 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~v~GG~~~---g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~~s 146 (517)
.+++|||.+++|+.++.++..++..+++..+++|||+||... ..+++++|||. +++|.+. ++|+.+|.+++
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~----~n~W~~~--~~m~~~R~~~~ 346 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIE----NKIHVEL--PPMIKNRCRFS 346 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECC----CCeEeeC--CCCcchhhcee
Confidence 478999999999999988887777777788999999999742 25789999999 8999999 78999999999
Q ss_pred eEEcCCCcEEEEcCCCC----CceEEe-CCCCCceeccchhhccccccCCCCceEEEccCCcEEEEECC-----------
Q 044265 147 DQILPDGSVIILGGKGA----NTVEYY-PPRNGAVSFPFLADVEDKQMDNLYPYVHLLPNGHLFIFAND----------- 210 (517)
Q Consensus 147 ~~~L~dG~v~vvGG~~~----~~~E~y-P~~~~w~~~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~Gg~----------- 210 (517)
++++ +|+||++||.++ .++|+| |.+++|...+.|+..+ ..+..+..+|+||++||.
T Consensus 347 ~~~~-~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r-------~~~~~~~~~g~IYviGG~~~~~~~~~~~~ 418 (557)
T PHA02713 347 LAVI-DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIAL-------SSYGMCVLDQYIYIIGGRTEHIDYTSVHH 418 (557)
T ss_pred EEEE-CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCccc-------ccccEEEECCEEEEEeCCCcccccccccc
Confidence 9999 999999999864 469999 9999999766554432 223455679999999984
Q ss_pred --------------ceEEEeCCCCeEEEecCCCCCCCCCCCCCCceeeeecccCccccEEEEEcCCcCCcccccCCCCCC
Q 044265 211 --------------KAVMYDYETNKIAREYPPLDGGPRNYPSAGSSAMLALEGDFATAVIVVCGGAQFGAFIQRSTDTPA 276 (517)
Q Consensus 211 --------------~~~~ydp~t~~w~~~~p~~p~~~r~~~~~g~~v~l~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~a 276 (517)
++++|||.+|+|+ .+++|+. +|..+ +++++ +++|||+||.+... ..
T Consensus 419 ~~~~~~~~~~~~~~~ve~YDP~td~W~-~v~~m~~-~r~~~--~~~~~--------~~~IYv~GG~~~~~--------~~ 478 (557)
T PHA02713 419 MNSIDMEEDTHSSNKVIRYDTVNNIWE-TLPNFWT-GTIRP--GVVSH--------KDDIYVVCDIKDEK--------NV 478 (557)
T ss_pred cccccccccccccceEEEECCCCCeEe-ecCCCCc-ccccC--cEEEE--------CCEEEEEeCCCCCC--------cc
Confidence 3789999999998 5899986 45443 44443 89999999976211 12
Q ss_pred CCceeEEEecCCC-CCceec-CCCcceeeeeeEEecCCcEEEEcCccCCCCCcccCCCCccccEEEeCCCCCCceeccCC
Q 044265 277 HGSCGRIIATSAD-PTWEME-DMPFGRIMGDMVMLPTGDVLIINGAQAGTQGFEMASNPCLFPVLYRPTQPAGLRFMTLN 354 (517)
Q Consensus 277 ~~s~~~id~~~~~-~~W~~~-~m~~~R~~~~~v~lpdG~v~v~GG~~~g~~g~~~~~~~~~~~e~YdP~t~~g~~W~~~~ 354 (517)
.+++|+|||. + ++|+.. +|+.+|..++++++ +|+||++||.+ |. .++|+|||.++ +|+.++
T Consensus 479 ~~~ve~Ydp~--~~~~W~~~~~m~~~r~~~~~~~~-~~~iyv~Gg~~-~~----------~~~e~yd~~~~---~W~~~~ 541 (557)
T PHA02713 479 KTCIFRYNTN--TYNGWELITTTESRLSALHTILH-DNTIMMLHCYE-SY----------MLQDTFNVYTY---EWNHIC 541 (557)
T ss_pred ceeEEEecCC--CCCCeeEccccCcccccceeEEE-CCEEEEEeeec-ce----------eehhhcCcccc---cccchh
Confidence 3467999998 6 799988 99999999996665 99999999986 31 25899999999 999887
Q ss_pred CC
Q 044265 355 PG 356 (517)
Q Consensus 355 ~~ 356 (517)
+.
T Consensus 542 ~~ 543 (557)
T PHA02713 542 HQ 543 (557)
T ss_pred hh
Confidence 65
No 5
>cd02851 Galactose_oxidase_C_term Galactose oxidase C-terminus domain. Galactose oxidase is an extracellular monomeric enzyme which catalyses the stereospecific oxidation of a broad range of primary alcohol substrates and possesses a unique mononuclear copper site essential for catalysing a two-electron transfer reaction during the oxidation of primary alcohols to corresponding aldehydes. The second redox active center necessary for the reaction was found to be situated at a tyrosine residue. The C-terminus of galactose oxidase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=100.00 E-value=3.2e-34 Score=236.52 Aligned_cols=98 Identities=33% Similarity=0.487 Sum_probs=87.7
Q ss_pred CCCCCCceecCC-ceeecCCeEEEEEEecCCceeeEEEEEecCCcccccCcCCcceEEeeecccccCCCCcEEEEEeCCC
Q 044265 409 RANLRPVIEEIP-ETVRYGEAFDVFVTVPLPVVGILEVNLGNAPFATHSFQQGQRLVKITVTPSVPDANGRYRVGCTAPP 487 (517)
Q Consensus 409 ~~~~RP~i~~~p-~~~~~g~~~~v~~~~~~~~~~~~~v~l~~~~~~TH~~~~~qR~~~l~~~~~~~~~~~~~~~~v~~P~ 487 (517)
.++.||+|+++| .+++||++|+|+++. .+.+|+|+|++|+||++|||||+|+|+++.. ++ ..+++++|+
T Consensus 2 ~~a~RP~I~~~p~~~i~yG~~f~v~~~~-----~i~~v~Lvr~~~~THs~~~~QR~v~L~~~~~---~~--~~~~v~~P~ 71 (101)
T cd02851 2 TLASRPVITSASTQTAKVGDTITVSTDS-----PISSASLVRYGSATHTVNTDQRRIPLTLFSV---GG--NSYSVQIPS 71 (101)
T ss_pred CCCCCCeeccCCccccccCCEEEEEEec-----cceEEEEEecccccccccCCccEEEeeeEec---CC--CEEEEEcCC
Confidence 457899999999 999999999999872 3799999999999999999999999999742 22 467788899
Q ss_pred CCCcCCCcceEEEEEc-CCcCcccEEEEee
Q 044265 488 NGAVAPPGYYMAFVVN-QGVPSVARWVHLI 516 (517)
Q Consensus 488 ~~~~~ppG~ymlf~~~-~gvPS~a~~v~i~ 516 (517)
|++|||||||||||++ +||||+|+||+|+
T Consensus 72 n~~vaPPGyYmLFvv~~~GvPS~a~wV~i~ 101 (101)
T cd02851 72 DPGVALPGYYMLFVMNSAGVPSVAKTIRIT 101 (101)
T ss_pred CCCcCCCcCeEEEEECCCCcccccEEEEeC
Confidence 9999999999999995 9999999999985
No 6
>PF09118 DUF1929: Domain of unknown function (DUF1929); InterPro: IPR015202 This domain adopts a secondary structure consisting of a bundle of seven, mostly antiparallel, beta-strands surrounding a hydrophobic core. The 7 strands are arranged in 2 sheets, in a Greek-key topology. Their precise function, has not, as yet, been defined, though they are mostly found in sugar-utilising enzymes, such as galactose oxidase []. ; PDB: 2JKX_A 2EIC_A 1K3I_A 1GOH_A 2EIB_A 2WQ8_A 2VZ1_A 1GOF_A 2VZ3_A 1GOG_A ....
Probab=100.00 E-value=4.2e-34 Score=236.49 Aligned_cols=97 Identities=54% Similarity=0.932 Sum_probs=67.9
Q ss_pred CCceecCCceeecCCeEEEEEEecCCceeeEEEEEecCCcccccCcCCcceEEeeecccccCCCCcEEEEEeCCCCCCcC
Q 044265 413 RPVIEEIPETVRYGEAFDVFVTVPLPVVGILEVNLGNAPFATHSFQQGQRLVKITVTPSVPDANGRYRVGCTAPPNGAVA 492 (517)
Q Consensus 413 RP~i~~~p~~~~~g~~~~v~~~~~~~~~~~~~v~l~~~~~~TH~~~~~qR~~~l~~~~~~~~~~~~~~~~v~~P~~~~~~ 492 (517)
||+|+++|+++.||++|+|+++.++ ..++.+|+|+|++|+|||+|||||+|+|++... + .++++|++|+|++|+
T Consensus 1 RP~i~~~p~~i~yg~~~tv~~~~~~-~~~~~~v~L~~~~~~THs~~~~QR~v~L~~~~~---~--~~~~~v~~P~~~~va 74 (98)
T PF09118_consen 1 RPVITSAPTTIKYGQTFTVTVTVPS-AASIVKVSLVRPGFVTHSFNMGQRMVELEFVSG---G--GNTVTVTAPPNPNVA 74 (98)
T ss_dssp ---EEES-SEEETT-EEEEEE--SS----ESEEEEEE--EEETTB-SS-EEEEE-EEEE---S--SSEEEEE--S-TTTS
T ss_pred CCccccCCCeEecCCEEEEEEECCC-ccceEEEEEEeCCcccccccCCCCEEeeeeecC---C--CCEEEEECCCCCccC
Confidence 9999999999999999999998654 457899999999999999999999999999421 2 369999999999999
Q ss_pred CCcceEEEEEc-CCcCcccEEEEe
Q 044265 493 PPGYYMAFVVN-QGVPSVARWVHL 515 (517)
Q Consensus 493 ppG~ymlf~~~-~gvPS~a~~v~i 515 (517)
|||||||||++ +||||+|+||+|
T Consensus 75 PPG~YmLFvv~~~GvPS~a~wV~v 98 (98)
T PF09118_consen 75 PPGYYMLFVVNDDGVPSVAKWVQV 98 (98)
T ss_dssp -SEEEEEEEEETTS-B---EEEEE
T ss_pred CCcCEEEEEEcCCCcccccEEEEC
Confidence 99999999999 999999999997
No 7
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=5e-32 Score=293.78 Aligned_cols=252 Identities=13% Similarity=0.137 Sum_probs=191.7
Q ss_pred cEEEecCCCC-CCCeEEEecCCCCCCCCceEeccCccccCcCccceeEEcCCCcEEEEcCCCC-----CceEEe-CCCCC
Q 044265 102 TVLQTGGDLD-GYKKIRKFSPCEANGLCDWVELDDVELVNGRWYGTDQILPDGSVIILGGKGA-----NTVEYY-PPRNG 174 (517)
Q Consensus 102 ~l~v~GG~~~-g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~~s~~~L~dG~v~vvGG~~~-----~~~E~y-P~~~~ 174 (517)
.+++.||... ....+++|||. +++|..+ ++|+.+|.+++++++ +|+|||+||.+. .++|+| |.++.
T Consensus 259 ~l~~~~g~~~~~~~~v~~yd~~----~~~W~~l--~~mp~~r~~~~~a~l-~~~IYviGG~~~~~~~~~~v~~Yd~~~n~ 331 (557)
T PHA02713 259 CLVCHDTKYNVCNPCILVYNIN----TMEYSVI--STIPNHIINYASAIV-DNEIIIAGGYNFNNPSLNKVYKINIENKI 331 (557)
T ss_pred EEEEecCccccCCCCEEEEeCC----CCeEEEC--CCCCccccceEEEEE-CCEEEEEcCCCCCCCccceEEEEECCCCe
Confidence 3555555321 12468999999 8999999 789999999999998 999999999742 468999 99999
Q ss_pred ceeccchhhccccccCCCCceEEEccCCcEEEEECC-------ceEEEeCCCCeEEEecCCCCCCCCCCCCCCceeeeec
Q 044265 175 AVSFPFLADVEDKQMDNLYPYVHLLPNGHLFIFAND-------KAVMYDYETNKIAREYPPLDGGPRNYPSAGSSAMLAL 247 (517)
Q Consensus 175 w~~~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~Gg~-------~~~~ydp~t~~w~~~~p~~p~~~r~~~~~g~~v~l~~ 247 (517)
|...+.|+..| ..+..+..+|+||++||. ++|+|||.+++|. .+++||. +|... +++++
T Consensus 332 W~~~~~m~~~R-------~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~-~~~~mp~-~r~~~--~~~~~--- 397 (557)
T PHA02713 332 HVELPPMIKNR-------CRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWK-MLPDMPI-ALSSY--GMCVL--- 397 (557)
T ss_pred EeeCCCCcchh-------hceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEE-ECCCCCc-ccccc--cEEEE---
Confidence 98776665433 224666779999999983 4899999999998 5899986 45443 33433
Q ss_pred ccCccccEEEEEcCCcCCc-cccc--------CCCCCCCCceeEEEecCCCCCceec-CCCcceeeeeeEEecCCcEEEE
Q 044265 248 EGDFATAVIVVCGGAQFGA-FIQR--------STDTPAHGSCGRIIATSADPTWEME-DMPFGRIMGDMVMLPTGDVLII 317 (517)
Q Consensus 248 ~~~~~~gkI~v~GG~~~~~-~~~~--------~~~~~a~~s~~~id~~~~~~~W~~~-~m~~~R~~~~~v~lpdG~v~v~ 317 (517)
+++||++||.+... +... ......++++++|||. +++|+.. +|+.+|..+++++ .+|+|||+
T Consensus 398 -----~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~--td~W~~v~~m~~~r~~~~~~~-~~~~IYv~ 469 (557)
T PHA02713 398 -----DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTV--NNIWETLPNFWTGTIRPGVVS-HKDDIYVV 469 (557)
T ss_pred -----CCEEEEEeCCCcccccccccccccccccccccccceEEEECCC--CCeEeecCCCCcccccCcEEE-ECCEEEEE
Confidence 89999999975210 0000 0000125789999998 6999988 9999999998666 59999999
Q ss_pred cCccCCCCCcccCCCCccccEEEeCCC-CCCceeccCCCCCccccccceeeecCCCcEEEecCCCccccccCCCCCCcee
Q 044265 318 NGAQAGTQGFEMASNPCLFPVLYRPTQ-PAGLRFMTLNPGTIPRMYHSTANLLPDGRVLIAGSNPHYFYKFNAEFPTELR 396 (517)
Q Consensus 318 GG~~~g~~g~~~~~~~~~~~e~YdP~t-~~g~~W~~~~~~~~~R~yhs~a~ll~dG~V~v~GG~~~~~~~~~~~~~~~~~ 396 (517)
||.+ +.. .-...+|+|||++ + +|+.+++|+.+|..|+++++ ||+|||+||... ..+
T Consensus 470 GG~~-~~~------~~~~~ve~Ydp~~~~---~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~-----------~~~ 526 (557)
T PHA02713 470 CDIK-DEK------NVKTCIFRYNTNTYN---GWELITTTESRLSALHTILH--DNTIMMLHCYES-----------YML 526 (557)
T ss_pred eCCC-CCC------ccceeEEEecCCCCC---CeeEccccCcccccceeEEE--CCEEEEEeeecc-----------eee
Confidence 9975 211 1123579999999 9 99999999999999987765 999999999653 126
Q ss_pred eEEEeCCcc
Q 044265 397 IEAFSPEYL 405 (517)
Q Consensus 397 vE~y~P~yl 405 (517)
+|+|+|..=
T Consensus 527 ~e~yd~~~~ 535 (557)
T PHA02713 527 QDTFNVYTY 535 (557)
T ss_pred hhhcCcccc
Confidence 899999874
No 8
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.97 E-value=3.1e-30 Score=265.36 Aligned_cols=250 Identities=14% Similarity=0.153 Sum_probs=178.5
Q ss_pred ceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCcccc-CcCccceeEEcCCCcEEEEcCCCC---------
Q 044265 94 SGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELV-NGRWYGTDQILPDGSVIILGGKGA--------- 163 (517)
Q Consensus 94 ~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~-~~R~~~s~~~L~dG~v~vvGG~~~--------- 163 (517)
+.+++.+++|||+||.. .+.+.+||+... +++|.++ ++|+ .+|..++++++ +++|||+||...
T Consensus 11 ~~~~~~~~~vyv~GG~~--~~~~~~~d~~~~--~~~W~~l--~~~p~~~R~~~~~~~~-~~~iYv~GG~~~~~~~~~~~~ 83 (346)
T TIGR03547 11 GTGAIIGDKVYVGLGSA--GTSWYKLDLKKP--SKGWQKI--ADFPGGPRNQAVAAAI-DGKLYVFGGIGKANSEGSPQV 83 (346)
T ss_pred ceEEEECCEEEEEcccc--CCeeEEEECCCC--CCCceEC--CCCCCCCcccceEEEE-CCEEEEEeCCCCCCCCCccee
Confidence 34556799999999974 367889996421 6889999 7898 58999999998 999999999742
Q ss_pred -CceEEe-CCCCCceeccc-hhhccccccCCCCceEEE-ccCCcEEEEECC-----------------------------
Q 044265 164 -NTVEYY-PPRNGAVSFPF-LADVEDKQMDNLYPYVHL-LPNGHLFIFAND----------------------------- 210 (517)
Q Consensus 164 -~~~E~y-P~~~~w~~~~~-l~~t~~~~~~~~yp~~~~-~~~G~iyv~Gg~----------------------------- 210 (517)
.++|+| |.+++|...+. ++. ..+.+.++ +.+|+||++||.
T Consensus 84 ~~~v~~Yd~~~~~W~~~~~~~p~-------~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (346)
T TIGR03547 84 FDDVYRYDPKKNSWQKLDTRSPV-------GLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAY 156 (346)
T ss_pred cccEEEEECCCCEEecCCCCCCC-------cccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHH
Confidence 358999 99999986642 221 12333344 579999999983
Q ss_pred ------------ceEEEeCCCCeEEEecCCCCCCCCCCCCCCceeeeecccCccccEEEEEcCCcCCcccccCCCCCCCC
Q 044265 211 ------------KAVMYDYETNKIAREYPPLDGGPRNYPSAGSSAMLALEGDFATAVIVVCGGAQFGAFIQRSTDTPAHG 278 (517)
Q Consensus 211 ------------~~~~ydp~t~~w~~~~p~~p~~~r~~~~~g~~v~l~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~a~~ 278 (517)
++|+|||.+++|+ .+++||..+|..+ +++.+ +++|||+||..... ..+.
T Consensus 157 ~~~~~~~~~~~~~v~~YDp~t~~W~-~~~~~p~~~r~~~---~~~~~-------~~~iyv~GG~~~~~--------~~~~ 217 (346)
T TIGR03547 157 FSQPPEDYFWNKNVLSYDPSTNQWR-NLGENPFLGTAGS---AIVHK-------GNKLLLINGEIKPG--------LRTA 217 (346)
T ss_pred hCCChhHcCccceEEEEECCCCcee-ECccCCCCcCCCc---eEEEE-------CCEEEEEeeeeCCC--------ccch
Confidence 4789999999998 5888874334321 22332 89999999975211 1233
Q ss_pred ceeEEEecCCCCCceec-CCCccee-------eeeeEEecCCcEEEEcCccCCCC------C--ccc-CCCCccccEEEe
Q 044265 279 SCGRIIATSADPTWEME-DMPFGRI-------MGDMVMLPTGDVLIINGAQAGTQ------G--FEM-ASNPCLFPVLYR 341 (517)
Q Consensus 279 s~~~id~~~~~~~W~~~-~m~~~R~-------~~~~v~lpdG~v~v~GG~~~g~~------g--~~~-~~~~~~~~e~Yd 341 (517)
.++.|++....++|+.. +|+.+|. .+.+++ .+|+|||+||.+.... + +.. ....+.++|+||
T Consensus 218 ~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~-~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd 296 (346)
T TIGR03547 218 EVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGI-SNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYA 296 (346)
T ss_pred heEEEEecCCCceeeecCCCCCCCCCccccccEEeeeE-ECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEE
Confidence 45567764336799987 9988763 333344 5999999999752100 0 000 011234689999
Q ss_pred CCCCCCceeccCCCCCccccccceeeecCCCcEEEecCCCc
Q 044265 342 PTQPAGLRFMTLNPGTIPRMYHSTANLLPDGRVLIAGSNPH 382 (517)
Q Consensus 342 P~t~~g~~W~~~~~~~~~R~yhs~a~ll~dG~V~v~GG~~~ 382 (517)
|+++ +|+.+++|+.+|.+|+++ ..+++|||+||...
T Consensus 297 ~~~~---~W~~~~~lp~~~~~~~~~--~~~~~iyv~GG~~~ 332 (346)
T TIGR03547 297 LDNG---KWSKVGKLPQGLAYGVSV--SWNNGVLLIGGENS 332 (346)
T ss_pred ecCC---cccccCCCCCCceeeEEE--EcCCEEEEEeccCC
Confidence 9999 999999999999888643 46999999999754
No 9
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.97 E-value=1.1e-28 Score=256.30 Aligned_cols=279 Identities=15% Similarity=0.154 Sum_probs=188.2
Q ss_pred eEEccccCCCcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCcccc-CcCccceeEEcCCCcEEEEc
Q 044265 81 IRPLMILTDTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELV-NGRWYGTDQILPDGSVIILG 159 (517)
Q Consensus 81 w~~l~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~-~~R~~~s~~~L~dG~v~vvG 159 (517)
+..++.++..+-...++..+++|||+||... +.+.+||+... +++|.++ .+|+ .+|..++++++ +++|||+|
T Consensus 19 ~~~l~~lP~~~~~~~~~~~~~~iyv~gG~~~--~~~~~~d~~~~--~~~W~~l--~~~p~~~r~~~~~v~~-~~~IYV~G 91 (376)
T PRK14131 19 AEQLPDLPVPFKNGTGAIDNNTVYVGLGSAG--TSWYKLDLNAP--SKGWTKI--AAFPGGPREQAVAAFI-DGKLYVFG 91 (376)
T ss_pred cccCCCCCcCccCCeEEEECCEEEEEeCCCC--CeEEEEECCCC--CCCeEEC--CcCCCCCcccceEEEE-CCEEEEEc
Confidence 4445555544333345567999999999743 56888998621 4789998 6787 58988888888 89999999
Q ss_pred CCCC----------CceEEe-CCCCCceeccchhhccccccCCCCceEEEc-cCCcEEEEECC-----------------
Q 044265 160 GKGA----------NTVEYY-PPRNGAVSFPFLADVEDKQMDNLYPYVHLL-PNGHLFIFAND----------------- 210 (517)
Q Consensus 160 G~~~----------~~~E~y-P~~~~w~~~~~l~~t~~~~~~~~yp~~~~~-~~G~iyv~Gg~----------------- 210 (517)
|... ..+++| |.+++|...+.+. . ...+.++.++ .+++||++||.
T Consensus 92 G~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~-p-----~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~ 165 (376)
T PRK14131 92 GIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRS-P-----VGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGK 165 (376)
T ss_pred CCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCC-C-----CcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhccc
Confidence 9753 357889 9999998765321 1 1122233333 79999999983
Q ss_pred ------------------------ceEEEeCCCCeEEEecCCCCCCCCCCCCCCceeeeecccCccccEEEEEcCCcCCc
Q 044265 211 ------------------------KAVMYDYETNKIAREYPPLDGGPRNYPSAGSSAMLALEGDFATAVIVVCGGAQFGA 266 (517)
Q Consensus 211 ------------------------~~~~ydp~t~~w~~~~p~~p~~~r~~~~~g~~v~l~~~~~~~~gkI~v~GG~~~~~ 266 (517)
.+++||+.+++|. .+++||..+|.. .+++.+ +++|||+||.....
T Consensus 166 ~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~-~~~~~p~~~~~~---~a~v~~-------~~~iYv~GG~~~~~ 234 (376)
T PRK14131 166 DKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWK-NAGESPFLGTAG---SAVVIK-------GNKLWLINGEIKPG 234 (376)
T ss_pred chhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeee-ECCcCCCCCCCc---ceEEEE-------CCEEEEEeeeECCC
Confidence 3789999999998 488887423332 123332 89999999975211
Q ss_pred ccccCCCCCCCCceeEEEecCCCCCceec-CCCcceee-------eeeEEecCCcEEEEcCccCCCC------C--cc-c
Q 044265 267 FIQRSTDTPAHGSCGRIIATSADPTWEME-DMPFGRIM-------GDMVMLPTGDVLIINGAQAGTQ------G--FE-M 329 (517)
Q Consensus 267 ~~~~~~~~~a~~s~~~id~~~~~~~W~~~-~m~~~R~~-------~~~v~lpdG~v~v~GG~~~g~~------g--~~-~ 329 (517)
. ....++.+++....++|+.. +|+.+|.. +.++++.+|+|||+||...... + +. .
T Consensus 235 ~--------~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~ 306 (376)
T PRK14131 235 L--------RTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHE 306 (376)
T ss_pred c--------CChhheEEEecCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCccccc
Confidence 1 12333333332226899987 89887742 1223446999999999752110 0 00 0
Q ss_pred CCCCccccEEEeCCCCCCceeccCCCCCccccccceeeecCCCcEEEecCCCccccccCCCCCCceeeEEEeCC
Q 044265 330 ASNPCLFPVLYRPTQPAGLRFMTLNPGTIPRMYHSTANLLPDGRVLIAGSNPHYFYKFNAEFPTELRIEAFSPE 403 (517)
Q Consensus 330 ~~~~~~~~e~YdP~t~~g~~W~~~~~~~~~R~yhs~a~ll~dG~V~v~GG~~~~~~~~~~~~~~~~~vE~y~P~ 403 (517)
....+.++|+|||+++ +|+.+++|+.+|.+|+++ ..+++|||+||.... +. ...+|++|.|.
T Consensus 307 ~~~~~~~~e~yd~~~~---~W~~~~~lp~~r~~~~av--~~~~~iyv~GG~~~~-----~~--~~~~v~~~~~~ 368 (376)
T PRK14131 307 GLKKSWSDEIYALVNG---KWQKVGELPQGLAYGVSV--SWNNGVLLIGGETAG-----GK--AVSDVTLLSWD 368 (376)
T ss_pred CCcceeehheEEecCC---cccccCcCCCCccceEEE--EeCCEEEEEcCCCCC-----Cc--EeeeEEEEEEc
Confidence 0112346899999999 999999999999998643 469999999996532 11 24578888876
No 10
>PLN02153 epithiospecifier protein
Probab=99.96 E-value=1.3e-27 Score=245.45 Aligned_cols=295 Identities=13% Similarity=0.125 Sum_probs=197.9
Q ss_pred CCCCceEEcccC----cccceeEEEEeeCCEEEEEeccCCCCCCcccCCCcccccccccccccCCcceEEEEECCCCCeE
Q 044265 7 DLPGTWELVLAD----AGISSMHTAVTRFNTVVLLDRTNIGPSRKMLGRGRCRLDRNDRALKRDCYAHSAILDLQTNQIR 82 (517)
Q Consensus 7 ~~~g~W~~~~~~----~~~~~~h~~ll~~gkv~~~gg~~~g~~~~~~~~G~~~~~~~~~~~~~d~~~~~~~yDp~t~~w~ 82 (517)
.+.++|+.+... ...+.-|+++..+++||++||.... +.. ....+.+||+.+++|+
T Consensus 4 ~~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~--------~~~------------~~~~~~~yd~~~~~W~ 63 (341)
T PLN02153 4 TLQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKP--------NEH------------IDKDLYVFDFNTHTWS 63 (341)
T ss_pred ccCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCC--------CCc------------eeCcEEEEECCCCEEE
Confidence 356889998652 2345568888889999999996421 000 1135889999999999
Q ss_pred EccccCC---Ccc-cceeecCCCcEEEecCCCCC--CCeEEEecCCCCCCCCceEeccCccc-----cCcCccceeEEcC
Q 044265 83 PLMILTD---TWC-SSGQILADGTVLQTGGDLDG--YKKIRKFSPCEANGLCDWVELDDVEL-----VNGRWYGTDQILP 151 (517)
Q Consensus 83 ~l~~~~~---~~c-~~~~~l~dG~l~v~GG~~~g--~~~v~~ydp~~~~~t~~W~~~~~~~m-----~~~R~~~s~~~L~ 151 (517)
.++.+.. ..| ...++..+++||++||.... .+.+++||+. +++|+++ .+| +.+|..|+++++
T Consensus 64 ~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~----t~~W~~~--~~~~~~~~p~~R~~~~~~~~- 136 (341)
T PLN02153 64 IAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTV----KNEWTFL--TKLDEEGGPEARTFHSMASD- 136 (341)
T ss_pred EcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECC----CCEEEEe--ccCCCCCCCCCceeeEEEEE-
Confidence 8875432 223 33456779999999997542 4689999999 8999988 566 778999998888
Q ss_pred CCcEEEEcCCCCCceEEeCCCCCceeccchhhccccccCCCCceEEEccCCcEEEEECCceEEEeCCCCeEEEecCCCCC
Q 044265 152 DGSVIILGGKGANTVEYYPPRNGAVSFPFLADVEDKQMDNLYPYVHLLPNGHLFIFANDKAVMYDYETNKIAREYPPLDG 231 (517)
Q Consensus 152 dG~v~vvGG~~~~~~E~yP~~~~w~~~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~Gg~~~~~ydp~t~~w~~~~p~~p~ 231 (517)
+++|||+||..... . +.... .+ +++++||+++++|. .++++..
T Consensus 137 ~~~iyv~GG~~~~~---------~-----~~~~~------~~----------------~~v~~yd~~~~~W~-~l~~~~~ 179 (341)
T PLN02153 137 ENHVYVFGGVSKGG---------L-----MKTPE------RF----------------RTIEAYNIADGKWV-QLPDPGE 179 (341)
T ss_pred CCEEEEECCccCCC---------c-----cCCCc------cc----------------ceEEEEECCCCeEe-eCCCCCC
Confidence 89999999975321 0 00000 00 13678999999998 4776531
Q ss_pred --CCCCCCCCCceeeeecccCccccEEEEEcCCcCCcccccCCCCCCCCceeEEEecCCCCCceec----CCCcceeeee
Q 044265 232 --GPRNYPSAGSSAMLALEGDFATAVIVVCGGAQFGAFIQRSTDTPAHGSCGRIIATSADPTWEME----DMPFGRIMGD 305 (517)
Q Consensus 232 --~~r~~~~~g~~v~l~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W~~~----~m~~~R~~~~ 305 (517)
.+|..+ +++++ +++|||+||.... +.........++.+++||+. +++|+.. .||.+|..++
T Consensus 180 ~~~~r~~~---~~~~~-------~~~iyv~GG~~~~-~~~gG~~~~~~~~v~~yd~~--~~~W~~~~~~g~~P~~r~~~~ 246 (341)
T PLN02153 180 NFEKRGGA---GFAVV-------QGKIWVVYGFATS-ILPGGKSDYESNAVQFFDPA--SGKWTEVETTGAKPSARSVFA 246 (341)
T ss_pred CCCCCCcc---eEEEE-------CCeEEEEeccccc-cccCCccceecCceEEEEcC--CCcEEeccccCCCCCCcceee
Confidence 123322 22332 8999999997521 10000000125678999988 6899975 3788999988
Q ss_pred eEEecCCcEEEEcCccCCC-CCcccCCCCccccEEEeCCCCCCceeccCC-----CCCccccccceeeecCCCcEEEecC
Q 044265 306 MVMLPTGDVLIINGAQAGT-QGFEMASNPCLFPVLYRPTQPAGLRFMTLN-----PGTIPRMYHSTANLLPDGRVLIAGS 379 (517)
Q Consensus 306 ~v~lpdG~v~v~GG~~~g~-~g~~~~~~~~~~~e~YdP~t~~g~~W~~~~-----~~~~~R~yhs~a~ll~dG~V~v~GG 379 (517)
+++ .+++|||+||..... .+..........+++|||+++ +|+.+. +++..|..|+++++.-+++||+.||
T Consensus 247 ~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~---~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG 322 (341)
T PLN02153 247 HAV-VGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETL---VWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHGG 322 (341)
T ss_pred eEE-ECCEEEEECcccCCccccccccccccccEEEEEcCcc---EEEeccCCCCCCCCCccccccccccCCcceEEEEcC
Confidence 655 599999999974110 000000111236899999999 999875 5666666666666655679999999
Q ss_pred CCc
Q 044265 380 NPH 382 (517)
Q Consensus 380 ~~~ 382 (517)
...
T Consensus 323 ~~~ 325 (341)
T PLN02153 323 KLP 325 (341)
T ss_pred cCC
Confidence 754
No 11
>PHA02790 Kelch-like protein; Provisional
Probab=99.96 E-value=2.5e-28 Score=261.12 Aligned_cols=217 Identities=13% Similarity=0.179 Sum_probs=168.9
Q ss_pred EECCCCCeEEccccCCCcccceeecCCCcEEEecCCCC--CCCeEEEecCCCCCCCCceEeccCccccCcCccceeEEcC
Q 044265 74 LDLQTNQIRPLMILTDTWCSSGQILADGTVLQTGGDLD--GYKKIRKFSPCEANGLCDWVELDDVELVNGRWYGTDQILP 151 (517)
Q Consensus 74 yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~v~GG~~~--g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~~s~~~L~ 151 (517)
|++.+++|.... ..| .++..++.||++||... ..++++.|||. +++|.+. ++|+.+|.+++++++
T Consensus 251 ~~~~~~~~~~~~----~~~--~~~~~~~~lyviGG~~~~~~~~~v~~Ydp~----~~~W~~~--~~m~~~r~~~~~v~~- 317 (480)
T PHA02790 251 YPMNMDQIIDIF----HMC--TSTHVGEVVYLIGGWMNNEIHNNAIAVNYI----SNNWIPI--PPMNSPRLYASGVPA- 317 (480)
T ss_pred cCCcccceeecc----CCc--ceEEECCEEEEEcCCCCCCcCCeEEEEECC----CCEEEEC--CCCCchhhcceEEEE-
Confidence 456666776532 122 23346889999999753 34789999999 8999999 789999999999998
Q ss_pred CCcEEEEcCCCC-CceEEe-CCCCCceeccchhhccccccCCCCceEEEccCCcEEEEEC-----CceEEEeCCCCeEEE
Q 044265 152 DGSVIILGGKGA-NTVEYY-PPRNGAVSFPFLADVEDKQMDNLYPYVHLLPNGHLFIFAN-----DKAVMYDYETNKIAR 224 (517)
Q Consensus 152 dG~v~vvGG~~~-~~~E~y-P~~~~w~~~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~Gg-----~~~~~ydp~t~~w~~ 224 (517)
||+||++||.+. .++|.| |.+++|...+.|+..+ +.++.+..+|+||++|| +++++|||++++|+
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r-------~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~- 389 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPR-------CNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQ- 389 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCC-------cccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEE-
Confidence 999999999854 579999 9999999776665433 23466677999999999 35899999999998
Q ss_pred ecCCCCCCCCCCCCCCceeeeecccCccccEEEEEcCCcCCcccccCCCCCCCCceeEEEecCCCCCceec-CCCcceee
Q 044265 225 EYPPLDGGPRNYPSAGSSAMLALEGDFATAVIVVCGGAQFGAFIQRSTDTPAHGSCGRIIATSADPTWEME-DMPFGRIM 303 (517)
Q Consensus 225 ~~p~~p~~~r~~~~~g~~v~l~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W~~~-~m~~~R~~ 303 (517)
.+|+|+. +|..+ +++++ +++||++||. +++||+. +++|+.. +|+.+|..
T Consensus 390 ~~~~m~~-~r~~~--~~~~~--------~~~IYv~GG~-----------------~e~ydp~--~~~W~~~~~m~~~r~~ 439 (480)
T PHA02790 390 FGPSTYY-PHYKS--CALVF--------GRRLFLVGRN-----------------AEFYCES--SNTWTLIDDPIYPRDN 439 (480)
T ss_pred eCCCCCC-ccccc--eEEEE--------CCEEEEECCc-----------------eEEecCC--CCcEeEcCCCCCCccc
Confidence 5888885 45442 33333 8999999984 2467766 6899988 99999999
Q ss_pred eeeEEecCCcEEEEcCccCCCCCcccCCCCccccEEEeCCCCCCceeccC
Q 044265 304 GDMVMLPTGDVLIINGAQAGTQGFEMASNPCLFPVLYRPTQPAGLRFMTL 353 (517)
Q Consensus 304 ~~~v~lpdG~v~v~GG~~~g~~g~~~~~~~~~~~e~YdP~t~~g~~W~~~ 353 (517)
+++++ .+|+|||+||.+.+ ..+.++|+|||+++ +|+.+
T Consensus 440 ~~~~v-~~~~IYviGG~~~~--------~~~~~ve~Yd~~~~---~W~~~ 477 (480)
T PHA02790 440 PELII-VDNKLLLIGGFYRG--------SYIDTIEVYNNRTY---SWNIW 477 (480)
T ss_pred cEEEE-ECCEEEEECCcCCC--------cccceEEEEECCCC---eEEec
Confidence 98666 59999999998621 12346899999999 99865
No 12
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.95 E-value=1.5e-26 Score=235.72 Aligned_cols=273 Identities=14% Similarity=0.138 Sum_probs=185.5
Q ss_pred ccceeEEEEeeCCEEEEEeccCCCCCCcccCCCcccccccccccccCCcceEEEEE-CCCC-CeEEccccCCCcccceee
Q 044265 20 GISSMHTAVTRFNTVVLLDRTNIGPSRKMLGRGRCRLDRNDRALKRDCYAHSAILD-LQTN-QIRPLMILTDTWCSSGQI 97 (517)
Q Consensus 20 ~~~~~h~~ll~~gkv~~~gg~~~g~~~~~~~~G~~~~~~~~~~~~~d~~~~~~~yD-p~t~-~w~~l~~~~~~~c~~~~~ 97 (517)
++.+ |.+...++++|++||.+.. ...+.++.. ..+...+.+|+ +..+ +|+.+..++..++.++++
T Consensus 3 ~~~g-~~~~~~~~~l~v~GG~~~~--~~~~~~~g~----------~~~~~~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~ 69 (323)
T TIGR03548 3 GVAG-CYAGIIGDYILVAGGCNFP--EDPLAEGGK----------KKNYKGIYIAKDENSNLKWVKDGQLPYEAAYGASV 69 (323)
T ss_pred ceee-EeeeEECCEEEEeeccCCC--CCchhhCCc----------EEeeeeeEEEecCCCceeEEEcccCCccccceEEE
Confidence 3444 4444478899999997631 111111111 11233455554 4433 799998888777666667
Q ss_pred cCCCcEEEecCCCC--CCCeEEEecCCCCCCCCce----EeccCccccCcCccceeEEcCCCcEEEEcCCCCCceEEeCC
Q 044265 98 LADGTVLQTGGDLD--GYKKIRKFSPCEANGLCDW----VELDDVELVNGRWYGTDQILPDGSVIILGGKGANTVEYYPP 171 (517)
Q Consensus 98 l~dG~l~v~GG~~~--g~~~v~~ydp~~~~~t~~W----~~~~~~~m~~~R~~~s~~~L~dG~v~vvGG~~~~~~E~yP~ 171 (517)
..+++||++||... ..+.+++||+. +++| ... .+|+.+|..++++++ +++|||+||.....
T Consensus 70 ~~~~~lyviGG~~~~~~~~~v~~~d~~----~~~w~~~~~~~--~~lp~~~~~~~~~~~-~~~iYv~GG~~~~~------ 136 (323)
T TIGR03548 70 SVENGIYYIGGSNSSERFSSVYRITLD----ESKEELICETI--GNLPFTFENGSACYK-DGTLYVGGGNRNGK------ 136 (323)
T ss_pred EECCEEEEEcCCCCCCCceeEEEEEEc----CCceeeeeeEc--CCCCcCccCceEEEE-CCEEEEEeCcCCCc------
Confidence 77999999999864 24789999998 6666 677 689999999998888 89999999953210
Q ss_pred CCCceeccchhhccccccCCCCceEEEccCCcEEEEECCceEEEeCCCCeEEEecCCCCCCCCCCCCCCceeeeecccCc
Q 044265 172 RNGAVSFPFLADVEDKQMDNLYPYVHLLPNGHLFIFANDKAVMYDYETNKIAREYPPLDGGPRNYPSAGSSAMLALEGDF 251 (517)
Q Consensus 172 ~~~w~~~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~Gg~~~~~ydp~t~~w~~~~p~~p~~~r~~~~~g~~v~l~~~~~~ 251 (517)
. + +++++||+++++|+ .+++||..+|..+ +++.+
T Consensus 137 -----~---~----------------------------~~v~~yd~~~~~W~-~~~~~p~~~r~~~---~~~~~------ 170 (323)
T TIGR03548 137 -----P---S----------------------------NKSYLFNLETQEWF-ELPDFPGEPRVQP---VCVKL------ 170 (323)
T ss_pred -----c---C----------------------------ceEEEEcCCCCCee-ECCCCCCCCCCcc---eEEEE------
Confidence 0 0 12679999999998 5888875445432 33332
Q ss_pred cccEEEEEcCCcCCcccccCCCCCCCCceeEEEecCCCCCceec-CCC---cce--eeeeeEEecCCcEEEEcCccCCCC
Q 044265 252 ATAVIVVCGGAQFGAFIQRSTDTPAHGSCGRIIATSADPTWEME-DMP---FGR--IMGDMVMLPTGDVLIINGAQAGTQ 325 (517)
Q Consensus 252 ~~gkI~v~GG~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W~~~-~m~---~~R--~~~~~v~lpdG~v~v~GG~~~g~~ 325 (517)
+++|||+||.+.. ...++++||+. +++|+.. +|+ .+| ..+.++++.+++|||+||.+....
T Consensus 171 -~~~iYv~GG~~~~----------~~~~~~~yd~~--~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~ 237 (323)
T TIGR03548 171 -QNELYVFGGGSNI----------AYTDGYKYSPK--KNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVY 237 (323)
T ss_pred -CCEEEEEcCCCCc----------cccceEEEecC--CCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHH
Confidence 8999999998622 12346899988 6899987 663 343 334445566899999999862100
Q ss_pred -----Ccc-------------------cCCCCccccEEEeCCCCCCceeccCCCCC-ccccccceeeecCCCcEEEecCC
Q 044265 326 -----GFE-------------------MASNPCLFPVLYRPTQPAGLRFMTLNPGT-IPRMYHSTANLLPDGRVLIAGSN 380 (517)
Q Consensus 326 -----g~~-------------------~~~~~~~~~e~YdP~t~~g~~W~~~~~~~-~~R~yhs~a~ll~dG~V~v~GG~ 380 (517)
.+. ....-..++|+|||.++ +|+.+++++ .+|..|+.++ .|++||++||+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~---~W~~~~~~p~~~r~~~~~~~--~~~~iyv~GG~ 312 (323)
T TIGR03548 238 NDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTG---KWKSIGNSPFFARCGAALLL--TGNNIFSINGE 312 (323)
T ss_pred HHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCC---eeeEcccccccccCchheEE--ECCEEEEEecc
Confidence 000 00000235899999999 999999887 5888886544 59999999997
Q ss_pred Cc
Q 044265 381 PH 382 (517)
Q Consensus 381 ~~ 382 (517)
..
T Consensus 313 ~~ 314 (323)
T TIGR03548 313 LK 314 (323)
T ss_pred cc
Confidence 54
No 13
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.95 E-value=1.7e-26 Score=237.66 Aligned_cols=247 Identities=18% Similarity=0.200 Sum_probs=174.5
Q ss_pred EEEEeeCCEEEEEeccCCCCCCcccCCCcccccccccccccCCcceEEEEEC--CCCCeEEccccC-CCcccceeecCCC
Q 044265 25 HTAVTRFNTVVLLDRTNIGPSRKMLGRGRCRLDRNDRALKRDCYAHSAILDL--QTNQIRPLMILT-DTWCSSGQILADG 101 (517)
Q Consensus 25 h~~ll~~gkv~~~gg~~~g~~~~~~~~G~~~~~~~~~~~~~d~~~~~~~yDp--~t~~w~~l~~~~-~~~c~~~~~l~dG 101 (517)
+++++.+++||++||... ....+||+ .+++|+.++.++ ..++..+++..++
T Consensus 11 ~~~~~~~~~vyv~GG~~~--------------------------~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~ 64 (346)
T TIGR03547 11 GTGAIIGDKVYVGLGSAG--------------------------TSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDG 64 (346)
T ss_pred ceEEEECCEEEEEccccC--------------------------CeeEEEECCCCCCCceECCCCCCCCcccceEEEECC
Confidence 556567999999998521 13567885 678999999887 4677777888899
Q ss_pred cEEEecCCCC--------CCCeEEEecCCCCCCCCceEeccCccccCcCccceeE-EcCCCcEEEEcCCCC---------
Q 044265 102 TVLQTGGDLD--------GYKKIRKFSPCEANGLCDWVELDDVELVNGRWYGTDQ-ILPDGSVIILGGKGA--------- 163 (517)
Q Consensus 102 ~l~v~GG~~~--------g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~~s~~-~L~dG~v~vvGG~~~--------- 163 (517)
+|||+||... ..+.+++|||. +++|++++ ..|+..|..++++ ++ +|+||++||.+.
T Consensus 65 ~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~----~~~W~~~~-~~~p~~~~~~~~~~~~-~g~IYviGG~~~~~~~~~~~~ 138 (346)
T TIGR03547 65 KLYVFGGIGKANSEGSPQVFDDVYRYDPK----KNSWQKLD-TRSPVGLLGASGFSLH-NGQAYFTGGVNKNIFDGYFAD 138 (346)
T ss_pred EEEEEeCCCCCCCCCcceecccEEEEECC----CCEEecCC-CCCCCcccceeEEEEe-CCEEEEEcCcChHHHHHHHhh
Confidence 9999999742 14689999999 89999982 2456667666666 45 999999999752
Q ss_pred -----------------------------CceEEe-CCCCCceeccchhhccccccCCCCceEEEccCCcEEEEECC---
Q 044265 164 -----------------------------NTVEYY-PPRNGAVSFPFLADVEDKQMDNLYPYVHLLPNGHLFIFAND--- 210 (517)
Q Consensus 164 -----------------------------~~~E~y-P~~~~w~~~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~Gg~--- 210 (517)
.++|+| |.+++|...+.|+.. ..+.+.++..+++||++||.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~------~r~~~~~~~~~~~iyv~GG~~~~ 212 (346)
T TIGR03547 139 LSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFL------GTAGSAIVHKGNKLLLINGEIKP 212 (346)
T ss_pred HhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccCCCC------cCCCceEEEECCEEEEEeeeeCC
Confidence 468999 999999976554321 12334566679999999984
Q ss_pred -----ceEEEe--CCCCeEEEecCCCCCCCCCC-CC--CC-ceeeeecccCccccEEEEEcCCcCCccc----ccCCC--
Q 044265 211 -----KAVMYD--YETNKIAREYPPLDGGPRNY-PS--AG-SSAMLALEGDFATAVIVVCGGAQFGAFI----QRSTD-- 273 (517)
Q Consensus 211 -----~~~~yd--p~t~~w~~~~p~~p~~~r~~-~~--~g-~~v~l~~~~~~~~gkI~v~GG~~~~~~~----~~~~~-- 273 (517)
.+++|| +.+++|+ .+++||. +|.. +. ++ .++++ +++|||+||.+..... +...+
T Consensus 213 ~~~~~~~~~y~~~~~~~~W~-~~~~m~~-~r~~~~~~~~~~~a~~~-------~~~Iyv~GG~~~~~~~~~~~~~~~~~~ 283 (346)
T TIGR03547 213 GLRTAEVKQYLFTGGKLEWN-KLPPLPP-PKSSSQEGLAGAFAGIS-------NGVLLVAGGANFPGAQENYKNGKLYAH 283 (346)
T ss_pred CccchheEEEEecCCCceee-ecCCCCC-CCCCccccccEEeeeEE-------CCEEEEeecCCCCCchhhhhcCCcccc
Confidence 244555 5778998 5888875 3321 11 11 12332 8999999997521000 00001
Q ss_pred --CCCCCceeEEEecCCCCCceec-CCCcceeeeeeEEecCCcEEEEcCcc
Q 044265 274 --TPAHGSCGRIIATSADPTWEME-DMPFGRIMGDMVMLPTGDVLIINGAQ 321 (517)
Q Consensus 274 --~~a~~s~~~id~~~~~~~W~~~-~m~~~R~~~~~v~lpdG~v~v~GG~~ 321 (517)
...+.++|+||+. .++|+.. +||.+|..+.+ +..+|+|||+||.+
T Consensus 284 ~~~~~~~~~e~yd~~--~~~W~~~~~lp~~~~~~~~-~~~~~~iyv~GG~~ 331 (346)
T TIGR03547 284 EGLIKAWSSEVYALD--NGKWSKVGKLPQGLAYGVS-VSWNNGVLLIGGEN 331 (346)
T ss_pred CCCCceeEeeEEEec--CCcccccCCCCCCceeeEE-EEcCCEEEEEeccC
Confidence 0123468899987 6899988 99999988874 44699999999986
No 14
>PLN02193 nitrile-specifier protein
Probab=99.95 E-value=6.5e-26 Score=241.87 Aligned_cols=299 Identities=11% Similarity=0.058 Sum_probs=203.0
Q ss_pred EEEEeeCCEEEEEeccCCCCCCcccCCCcccccccccccccCCcceEEEEECCC----CCeEEccc---cCCCcccceee
Q 044265 25 HTAVTRFNTVVLLDRTNIGPSRKMLGRGRCRLDRNDRALKRDCYAHSAILDLQT----NQIRPLMI---LTDTWCSSGQI 97 (517)
Q Consensus 25 h~~ll~~gkv~~~gg~~~g~~~~~~~~G~~~~~~~~~~~~~d~~~~~~~yDp~t----~~w~~l~~---~~~~~c~~~~~ 97 (517)
+.+++.++||+.+.|.... .+ ..-.+.++||.+ ++|..+.. ++..++.+.++
T Consensus 114 ~~f~~~~~~ivgf~G~~~~--~~-------------------~~ig~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~ 172 (470)
T PLN02193 114 VKFVLQGGKIVGFHGRSTD--VL-------------------HSLGAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIA 172 (470)
T ss_pred CEEEEcCCeEEEEeccCCC--cE-------------------EeeEEEEecCCChhhhceEEEcccCCCCCCCccccEEE
Confidence 4455678898888875311 00 011244558766 89998875 35577777778
Q ss_pred cCCCcEEEecCCCCC----CCeEEEecCCCCCCCCceEeccCc-cccC-cCccceeEEcCCCcEEEEcCCCC----CceE
Q 044265 98 LADGTVLQTGGDLDG----YKKIRKFSPCEANGLCDWVELDDV-ELVN-GRWYGTDQILPDGSVIILGGKGA----NTVE 167 (517)
Q Consensus 98 l~dG~l~v~GG~~~g----~~~v~~ydp~~~~~t~~W~~~~~~-~m~~-~R~~~s~~~L~dG~v~vvGG~~~----~~~E 167 (517)
..+++||++||.... .+.+++||+. +++|...+.. +++. .|..++++++ +++|||+||.+. ..++
T Consensus 173 ~~~~~iyv~GG~~~~~~~~~~~v~~yD~~----~~~W~~~~~~g~~P~~~~~~~~~v~~-~~~lYvfGG~~~~~~~ndv~ 247 (470)
T PLN02193 173 QVGNKIYSFGGEFTPNQPIDKHLYVFDLE----TRTWSISPATGDVPHLSCLGVRMVSI-GSTLYVFGGRDASRQYNGFY 247 (470)
T ss_pred EECCEEEEECCcCCCCCCeeCcEEEEECC----CCEEEeCCCCCCCCCCcccceEEEEE-CCEEEEECCCCCCCCCccEE
Confidence 889999999997421 2569999999 8999987211 2333 2456777777 899999999764 4688
Q ss_pred Ee-CCCCCceeccchhhccccccCCCCceEEEccCCcEEEEECC-------ceEEEeCCCCeEEEecCC---CCCCCCCC
Q 044265 168 YY-PPRNGAVSFPFLADVEDKQMDNLYPYVHLLPNGHLFIFAND-------KAVMYDYETNKIAREYPP---LDGGPRNY 236 (517)
Q Consensus 168 ~y-P~~~~w~~~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~Gg~-------~~~~ydp~t~~w~~~~p~---~p~~~r~~ 236 (517)
+| |.+++|..++.+.. .+...+.+.+++.+++||++||. ++++||+.+++|.. +++ +|. .|..
T Consensus 248 ~yD~~t~~W~~l~~~~~----~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~-~~~~~~~~~-~R~~ 321 (470)
T PLN02193 248 SFDTTTNEWKLLTPVEE----GPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFH-CSTPGDSFS-IRGG 321 (470)
T ss_pred EEECCCCEEEEcCcCCC----CCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEe-CCCCCCCCC-CCCC
Confidence 89 99999986544311 01223445666679999999983 47899999999984 553 221 2332
Q ss_pred CCCCceeeeecccCccccEEEEEcCCcCCcccccCCCCCCCCceeEEEecCCCCCceec-CC---CcceeeeeeEEecCC
Q 044265 237 PSAGSSAMLALEGDFATAVIVVCGGAQFGAFIQRSTDTPAHGSCGRIIATSADPTWEME-DM---PFGRIMGDMVMLPTG 312 (517)
Q Consensus 237 ~~~g~~v~l~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W~~~-~m---~~~R~~~~~v~lpdG 312 (517)
.+++++ +++||++||.+ +. ..+++++||+. +++|+.. +| |.+|..+++++ .++
T Consensus 322 ---~~~~~~-------~gkiyviGG~~-g~---------~~~dv~~yD~~--t~~W~~~~~~g~~P~~R~~~~~~~-~~~ 378 (470)
T PLN02193 322 ---AGLEVV-------QGKVWVVYGFN-GC---------EVDDVHYYDPV--QDKWTQVETFGVRPSERSVFASAA-VGK 378 (470)
T ss_pred ---cEEEEE-------CCcEEEEECCC-CC---------ccCceEEEECC--CCEEEEeccCCCCCCCcceeEEEE-ECC
Confidence 223332 89999999975 21 25678999988 6899876 44 88999988665 599
Q ss_pred cEEEEcCccCCC-CCcccCCCCccccEEEeCCCCCCceeccCCCC------CccccccceeeecCC--CcEEEecCCC
Q 044265 313 DVLIINGAQAGT-QGFEMASNPCLFPVLYRPTQPAGLRFMTLNPG------TIPRMYHSTANLLPD--GRVLIAGSNP 381 (517)
Q Consensus 313 ~v~v~GG~~~g~-~g~~~~~~~~~~~e~YdP~t~~g~~W~~~~~~------~~~R~yhs~a~ll~d--G~V~v~GG~~ 381 (517)
+|||+||..... ...........++++|||.++ +|+.+..+ +.+|..|+.+....+ .++++.||..
T Consensus 379 ~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~---~W~~~~~~~~~~~~P~~R~~~~~~~~~~~~~~~~~~fGG~~ 453 (470)
T PLN02193 379 HIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETL---QWERLDKFGEEEETPSSRGWTASTTGTIDGKKGLVMHGGKA 453 (470)
T ss_pred EEEEECCccCCccccccCccceeccEEEEEcCcC---EEEEcccCCCCCCCCCCCccccceeeEEcCCceEEEEcCCC
Confidence 999999975210 000000011235899999999 99987643 578888864332223 3499999975
No 15
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.95 E-value=2.2e-26 Score=239.26 Aligned_cols=284 Identities=19% Similarity=0.174 Sum_probs=192.4
Q ss_pred CceEEcccCcccceeEEEEeeCCEEEEEeccCCCCCCcccCCCcccccccccccccCCcceEEEEECC--CCCeEEcccc
Q 044265 10 GTWELVLADAGISSMHTAVTRFNTVVLLDRTNIGPSRKMLGRGRCRLDRNDRALKRDCYAHSAILDLQ--TNQIRPLMIL 87 (517)
Q Consensus 10 g~W~~~~~~~~~~~~h~~ll~~gkv~~~gg~~~g~~~~~~~~G~~~~~~~~~~~~~d~~~~~~~yDp~--t~~w~~l~~~ 87 (517)
=.++.++++..-...+++...+++||++||... .....||+. +++|+.++.+
T Consensus 17 ~~~~~l~~lP~~~~~~~~~~~~~~iyv~gG~~~--------------------------~~~~~~d~~~~~~~W~~l~~~ 70 (376)
T PRK14131 17 ANAEQLPDLPVPFKNGTGAIDNNTVYVGLGSAG--------------------------TSWYKLDLNAPSKGWTKIAAF 70 (376)
T ss_pred eecccCCCCCcCccCCeEEEECCEEEEEeCCCC--------------------------CeEEEEECCCCCCCeEECCcC
Confidence 345666544322233566668999999998521 125578876 5789999876
Q ss_pred C-CCcccceeecCCCcEEEecCCCC----C----CCeEEEecCCCCCCCCceEeccCccccCcCccceeEEcCCCcEEEE
Q 044265 88 T-DTWCSSGQILADGTVLQTGGDLD----G----YKKIRKFSPCEANGLCDWVELDDVELVNGRWYGTDQILPDGSVIIL 158 (517)
Q Consensus 88 ~-~~~c~~~~~l~dG~l~v~GG~~~----g----~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~~s~~~L~dG~v~vv 158 (517)
+ ..++...++..+++|||+||... + .+.+++||+. +++|+.++ ..++..|..++++++.|++|||+
T Consensus 71 p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~----~n~W~~~~-~~~p~~~~~~~~~~~~~~~IYv~ 145 (376)
T PRK14131 71 PGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPK----TNSWQKLD-TRSPVGLAGHVAVSLHNGKAYIT 145 (376)
T ss_pred CCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCC----CCEEEeCC-CCCCCcccceEEEEeeCCEEEEE
Confidence 5 35666666778999999999753 1 3679999999 89999982 12456677777777349999999
Q ss_pred cCCCC--------------------------------------CceEEe-CCCCCceeccchhhccccccCCCCceEEEc
Q 044265 159 GGKGA--------------------------------------NTVEYY-PPRNGAVSFPFLADVEDKQMDNLYPYVHLL 199 (517)
Q Consensus 159 GG~~~--------------------------------------~~~E~y-P~~~~w~~~~~l~~t~~~~~~~~yp~~~~~ 199 (517)
||.+. ..+++| |.+++|...+.++.. ....++++.
T Consensus 146 GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~------~~~~~a~v~ 219 (376)
T PRK14131 146 GGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFL------GTAGSAVVI 219 (376)
T ss_pred CCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCC------CCCcceEEE
Confidence 99742 358999 999999866544321 123345666
Q ss_pred cCCcEEEEECC------ceE----EEeCCCCeEEEecCCCCCCCCCCC----CCCc-eeeeecccCccccEEEEEcCCcC
Q 044265 200 PNGHLFIFAND------KAV----MYDYETNKIAREYPPLDGGPRNYP----SAGS-SAMLALEGDFATAVIVVCGGAQF 264 (517)
Q Consensus 200 ~~G~iyv~Gg~------~~~----~ydp~t~~w~~~~p~~p~~~r~~~----~~g~-~v~l~~~~~~~~gkI~v~GG~~~ 264 (517)
.+++||++||. ..+ .||+++++|. .+++||. +|..+ ..+. ++++ +++|||+||.+.
T Consensus 220 ~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~-~~~~~p~-~~~~~~~~~~~~~~a~~~-------~~~iyv~GG~~~ 290 (376)
T PRK14131 220 KGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQ-KLPDLPP-APGGSSQEGVAGAFAGYS-------NGVLLVAGGANF 290 (376)
T ss_pred ECCEEEEEeeeECCCcCChhheEEEecCCCccee-ecCCCCC-CCcCCcCCccceEeceeE-------CCEEEEeeccCC
Confidence 79999999983 222 4578899998 5888875 33211 0111 2222 899999999752
Q ss_pred Cccc----ccCCC----CCCCCceeEEEecCCCCCceec-CCCcceeeeeeEEecCCcEEEEcCccCCCCCcccCCCCcc
Q 044265 265 GAFI----QRSTD----TPAHGSCGRIIATSADPTWEME-DMPFGRIMGDMVMLPTGDVLIINGAQAGTQGFEMASNPCL 335 (517)
Q Consensus 265 ~~~~----~~~~~----~~a~~s~~~id~~~~~~~W~~~-~m~~~R~~~~~v~lpdG~v~v~GG~~~g~~g~~~~~~~~~ 335 (517)
.... ....+ .....++|+||+. +++|+.. +||.+|.++.+++ .+|+|||+||...+ ...+.
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~--~~~W~~~~~lp~~r~~~~av~-~~~~iyv~GG~~~~-------~~~~~ 360 (376)
T PRK14131 291 PGARENYQNGKLYAHEGLKKSWSDEIYALV--NGKWQKVGELPQGLAYGVSVS-WNNGVLLIGGETAG-------GKAVS 360 (376)
T ss_pred CCChhhhhcCCcccccCCcceeehheEEec--CCcccccCcCCCCccceEEEE-eCCEEEEEcCCCCC-------CcEee
Confidence 1100 00000 0112357889988 6899987 9999999987555 59999999997521 12345
Q ss_pred ccEEEeCCCCCCceecc
Q 044265 336 FPVLYRPTQPAGLRFMT 352 (517)
Q Consensus 336 ~~e~YdP~t~~g~~W~~ 352 (517)
.+++|+++.+ +++.
T Consensus 361 ~v~~~~~~~~---~~~~ 374 (376)
T PRK14131 361 DVTLLSWDGK---KLTV 374 (376)
T ss_pred eEEEEEEcCC---EEEE
Confidence 7899999987 6653
No 16
>PHA03098 kelch-like protein; Provisional
Probab=99.95 E-value=1.4e-26 Score=251.71 Aligned_cols=243 Identities=15% Similarity=0.208 Sum_probs=186.8
Q ss_pred eEEEEECCCCCeEEccccCCCcccceeecCCCcEEEecCCCC---CCCeEEEecCCCCCCCCceEeccCccccCcCccce
Q 044265 70 HSAILDLQTNQIRPLMILTDTWCSSGQILADGTVLQTGGDLD---GYKKIRKFSPCEANGLCDWVELDDVELVNGRWYGT 146 (517)
Q Consensus 70 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~v~GG~~~---g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~~s 146 (517)
....|++.+++|..+...+...|. ++++.+++||++||... ..+.+.+||+. +++|.+. ++|+.+|.+++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~----~~~W~~~--~~~~~~R~~~~ 337 (534)
T PHA03098 265 NYITNYSPLSEINTIIDIHYVYCF-GSVVLNNVIYFIGGMNKNNLSVNSVVSYDTK----TKSWNKV--PELIYPRKNPG 337 (534)
T ss_pred eeeecchhhhhcccccCccccccc-eEEEECCEEEEECCCcCCCCeeccEEEEeCC----CCeeeEC--CCCCcccccce
Confidence 456789889999998766544453 56678999999999863 23579999999 8999998 78999999999
Q ss_pred eEEcCCCcEEEEcCCCC----CceEEe-CCCCCceeccchhhccccccCCCCceEEEccCCcEEEEEC--------CceE
Q 044265 147 DQILPDGSVIILGGKGA----NTVEYY-PPRNGAVSFPFLADVEDKQMDNLYPYVHLLPNGHLFIFAN--------DKAV 213 (517)
Q Consensus 147 ~~~L~dG~v~vvGG~~~----~~~E~y-P~~~~w~~~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~Gg--------~~~~ 213 (517)
++++ +|+||++||.+. .++|+| |.+++|...+.++.. .+.+..+..+|+||++|| ++++
T Consensus 338 ~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~-------r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~ 409 (534)
T PHA03098 338 VTVF-NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFP-------RYNPCVVNVNNLIYVIGGISKNDELLKTVE 409 (534)
T ss_pred EEEE-CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcC-------CccceEEEECCEEEEECCcCCCCcccceEE
Confidence 9988 999999999863 468999 999999866554432 234566677999999999 3589
Q ss_pred EEeCCCCeEEEecCCCCCCCCCCCCCCceeeeecccCccccEEEEEcCCcCCcccccCCCCCCCCceeEEEecCCCCCce
Q 044265 214 MYDYETNKIAREYPPLDGGPRNYPSAGSSAMLALEGDFATAVIVVCGGAQFGAFIQRSTDTPAHGSCGRIIATSADPTWE 293 (517)
Q Consensus 214 ~ydp~t~~w~~~~p~~p~~~r~~~~~g~~v~l~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W~ 293 (517)
+||+.+++|. .+++||. +|.. ++++.+ +++||++||....... ...+.+++||+. +++|+
T Consensus 410 ~yd~~t~~W~-~~~~~p~-~r~~---~~~~~~-------~~~iyv~GG~~~~~~~------~~~~~v~~yd~~--~~~W~ 469 (534)
T PHA03098 410 CFSLNTNKWS-KGSPLPI-SHYG---GCAIYH-------DGKIYVIGGISYIDNI------KVYNIVESYNPV--TNKWT 469 (534)
T ss_pred EEeCCCCeee-ecCCCCc-cccC---ceEEEE-------CCEEEEECCccCCCCC------cccceEEEecCC--CCcee
Confidence 9999999998 5888885 3443 233332 8999999997521100 124558899988 68999
Q ss_pred ec-CCCcceeeeeeEEecCCcEEEEcCccCCCCCcccCCCCccccEEEeCCCCCCceeccCCCCCcc
Q 044265 294 ME-DMPFGRIMGDMVMLPTGDVLIINGAQAGTQGFEMASNPCLFPVLYRPTQPAGLRFMTLNPGTIP 359 (517)
Q Consensus 294 ~~-~m~~~R~~~~~v~lpdG~v~v~GG~~~g~~g~~~~~~~~~~~e~YdP~t~~g~~W~~~~~~~~~ 359 (517)
.. +|+.+|..++++++ +|+|||+||.... . ...++|+|||+++ +|+.+..++..
T Consensus 470 ~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~-~-------~~~~v~~yd~~~~---~W~~~~~~p~~ 524 (534)
T PHA03098 470 ELSSLNFPRINASLCIF-NNKIYVVGGDKYE-Y-------YINEIEVYDDKTN---TWTLFCKFPKV 524 (534)
T ss_pred eCCCCCcccccceEEEE-CCEEEEEcCCcCC-c-------ccceeEEEeCCCC---EEEecCCCccc
Confidence 88 89999999886664 9999999998621 1 1346899999999 99988765543
No 17
>PHA02790 Kelch-like protein; Provisional
Probab=99.95 E-value=1.7e-26 Score=247.09 Aligned_cols=206 Identities=16% Similarity=0.196 Sum_probs=164.9
Q ss_pred EeeCCEEEEEeccCCCCCCcccCCCcccccccccccccCCcceEEEEECCCCCeEEccccCCCcccceeecCCCcEEEec
Q 044265 28 VTRFNTVVLLDRTNIGPSRKMLGRGRCRLDRNDRALKRDCYAHSAILDLQTNQIRPLMILTDTWCSSGQILADGTVLQTG 107 (517)
Q Consensus 28 ll~~gkv~~~gg~~~g~~~~~~~~G~~~~~~~~~~~~~d~~~~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~v~G 107 (517)
+..+++||++||.+.. . ....++.|||.+++|..++.++..++..+++..||+||++|
T Consensus 268 ~~~~~~lyviGG~~~~--------~--------------~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviG 325 (480)
T PHA02790 268 THVGEVVYLIGGWMNN--------E--------------IHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVG 325 (480)
T ss_pred EEECCEEEEEcCCCCC--------C--------------cCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEEC
Confidence 3478899999996421 0 12468899999999999999888887777778899999999
Q ss_pred CCCCCCCeEEEecCCCCCCCCceEeccCccccCcCccceeEEcCCCcEEEEcCCCC--CceEEe-CCCCCceeccchhhc
Q 044265 108 GDLDGYKKIRKFSPCEANGLCDWVELDDVELVNGRWYGTDQILPDGSVIILGGKGA--NTVEYY-PPRNGAVSFPFLADV 184 (517)
Q Consensus 108 G~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~~s~~~L~dG~v~vvGG~~~--~~~E~y-P~~~~w~~~~~l~~t 184 (517)
|.. +.++++.|||. +++|... ++|+.+|..++++++ +|+|||+||.+. .++|+| |.+++|...+.|...
T Consensus 326 G~~-~~~sve~ydp~----~n~W~~~--~~l~~~r~~~~~~~~-~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~ 397 (480)
T PHA02790 326 GLP-NPTSVERWFHG----DAAWVNM--PSLLKPRCNPAVASI-NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYP 397 (480)
T ss_pred CcC-CCCceEEEECC----CCeEEEC--CCCCCCCcccEEEEE-CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCc
Confidence 975 34789999998 8999999 789999999999999 999999999764 468999 999999976665433
Q ss_pred cccccCCCCceEEEccCCcEEEEECCceEEEeCCCCeEEEecCCCCCCCCCCCCCCceeeeecccCccccEEEEEcCCcC
Q 044265 185 EDKQMDNLYPYVHLLPNGHLFIFANDKAVMYDYETNKIAREYPPLDGGPRNYPSAGSSAMLALEGDFATAVIVVCGGAQF 264 (517)
Q Consensus 185 ~~~~~~~~yp~~~~~~~G~iyv~Gg~~~~~ydp~t~~w~~~~p~~p~~~r~~~~~g~~v~l~~~~~~~~gkI~v~GG~~~ 264 (517)
+ +.+..++.+|+||++||. +++|||++|+|+ .+++|+. +|..+ +++++ +++||++||.+.
T Consensus 398 r-------~~~~~~~~~~~IYv~GG~-~e~ydp~~~~W~-~~~~m~~-~r~~~--~~~v~--------~~~IYviGG~~~ 457 (480)
T PHA02790 398 H-------YKSCALVFGRRLFLVGRN-AEFYCESSNTWT-LIDDPIY-PRDNP--ELIIV--------DNKLLLIGGFYR 457 (480)
T ss_pred c-------ccceEEEECCEEEEECCc-eEEecCCCCcEe-EcCCCCC-Ccccc--EEEEE--------CCEEEEECCcCC
Confidence 2 224556679999999985 799999999998 5888885 45543 44443 899999999863
Q ss_pred CcccccCCCCCCCCceeEEEecCCCCCcee
Q 044265 265 GAFIQRSTDTPAHGSCGRIIATSADPTWEM 294 (517)
Q Consensus 265 ~~~~~~~~~~~a~~s~~~id~~~~~~~W~~ 294 (517)
+. ..+++|+||+. +++|+.
T Consensus 458 ~~---------~~~~ve~Yd~~--~~~W~~ 476 (480)
T PHA02790 458 GS---------YIDTIEVYNNR--TYSWNI 476 (480)
T ss_pred Cc---------ccceEEEEECC--CCeEEe
Confidence 21 24679999998 689975
No 18
>PLN02193 nitrile-specifier protein
Probab=99.94 E-value=3.3e-24 Score=228.79 Aligned_cols=268 Identities=16% Similarity=0.152 Sum_probs=184.8
Q ss_pred CCceEEcccC---cccceeEEEEeeCCEEEEEeccCCCCCCcccCCCcccccccccccccCCcceEEEEECCCCCeEEcc
Q 044265 9 PGTWELVLAD---AGISSMHTAVTRFNTVVLLDRTNIGPSRKMLGRGRCRLDRNDRALKRDCYAHSAILDLQTNQIRPLM 85 (517)
Q Consensus 9 ~g~W~~~~~~---~~~~~~h~~ll~~gkv~~~gg~~~g~~~~~~~~G~~~~~~~~~~~~~d~~~~~~~yDp~t~~w~~l~ 85 (517)
.++|..+.+. ...++.|+++..+++||++||.... +.. .....++||+.+++|+.++
T Consensus 150 ~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~--------~~~------------~~~~v~~yD~~~~~W~~~~ 209 (470)
T PLN02193 150 LGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTP--------NQP------------IDKHLYVFDLETRTWSISP 209 (470)
T ss_pred hceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCC--------CCC------------eeCcEEEEECCCCEEEeCC
Confidence 4899988742 3456779988889999999996421 100 1135889999999999876
Q ss_pred cc---CCC-cccceeecCCCcEEEecCCCC--CCCeEEEecCCCCCCCCceEeccCccc---cCcCccceeEEcCCCcEE
Q 044265 86 IL---TDT-WCSSGQILADGTVLQTGGDLD--GYKKIRKFSPCEANGLCDWVELDDVEL---VNGRWYGTDQILPDGSVI 156 (517)
Q Consensus 86 ~~---~~~-~c~~~~~l~dG~l~v~GG~~~--g~~~v~~ydp~~~~~t~~W~~~~~~~m---~~~R~~~s~~~L~dG~v~ 156 (517)
.+ +.. ++...++..+++|||+||... ..+.+++||+. +++|+++ .+| +.+|.+|+++++ +++||
T Consensus 210 ~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~----t~~W~~l--~~~~~~P~~R~~h~~~~~-~~~iY 282 (470)
T PLN02193 210 ATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTT----TNEWKLL--TPVEEGPTPRSFHSMAAD-EENVY 282 (470)
T ss_pred CCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECC----CCEEEEc--CcCCCCCCCccceEEEEE-CCEEE
Confidence 43 222 334455678999999999753 25789999999 8999998 566 789999998887 89999
Q ss_pred EEcCCCC----CceEEe-CCCCCceeccchhhccccccCCCCceEEEccCCcEEEEEC------CceEEEeCCCCeEEEe
Q 044265 157 ILGGKGA----NTVEYY-PPRNGAVSFPFLADVEDKQMDNLYPYVHLLPNGHLFIFAN------DKAVMYDYETNKIARE 225 (517)
Q Consensus 157 vvGG~~~----~~~E~y-P~~~~w~~~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~Gg------~~~~~ydp~t~~w~~~ 225 (517)
|+||.+. ..++.| |.+++|...+.... .+...+.+.+++.+|+||++|| +++++||+.+++|++
T Consensus 283 v~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~----~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~- 357 (470)
T PLN02193 283 VFGGVSATARLKTLDSYNIVDKKWFHCSTPGD----SFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQ- 357 (470)
T ss_pred EECCCCCCCCcceEEEEECCCCEEEeCCCCCC----CCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEE-
Confidence 9999764 357889 99999986543110 0111223455667999999998 468999999999985
Q ss_pred cCCC---CCCCCCCCCCCceeeeecccCccccEEEEEcCCcCCcccccCCCCCCCCceeEEEecCCCCCceec-C-----
Q 044265 226 YPPL---DGGPRNYPSAGSSAMLALEGDFATAVIVVCGGAQFGAFIQRSTDTPAHGSCGRIIATSADPTWEME-D----- 296 (517)
Q Consensus 226 ~p~~---p~~~r~~~~~g~~v~l~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W~~~-~----- 296 (517)
++++ |. +|..+ +++.+ +++|||+||...............++++++||+. +++|+.. .
T Consensus 358 ~~~~g~~P~-~R~~~---~~~~~-------~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~--t~~W~~~~~~~~~~ 424 (470)
T PLN02193 358 VETFGVRPS-ERSVF---ASAAV-------GKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTE--TLQWERLDKFGEEE 424 (470)
T ss_pred eccCCCCCC-Cccee---EEEEE-------CCEEEEECCccCCccccccCccceeccEEEEEcC--cCEEEEcccCCCCC
Confidence 6554 32 34432 33332 8999999997521100000000124678999987 6899965 3
Q ss_pred -CCcceeeeeeE-EecCC--cEEEEcCcc
Q 044265 297 -MPFGRIMGDMV-MLPTG--DVLIINGAQ 321 (517)
Q Consensus 297 -m~~~R~~~~~v-~lpdG--~v~v~GG~~ 321 (517)
.|.+|..+.++ ...++ .++++||..
T Consensus 425 ~~P~~R~~~~~~~~~~~~~~~~~~fGG~~ 453 (470)
T PLN02193 425 ETPSSRGWTASTTGTIDGKKGLVMHGGKA 453 (470)
T ss_pred CCCCCCccccceeeEEcCCceEEEEcCCC
Confidence 35778776532 22343 399999986
No 19
>PHA03098 kelch-like protein; Provisional
Probab=99.93 E-value=6.1e-25 Score=238.97 Aligned_cols=248 Identities=15% Similarity=0.193 Sum_probs=181.4
Q ss_pred cEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccCcCccceeEEcCCCcEEEEcCCCC-----CceEEe-CCCCCc
Q 044265 102 TVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVNGRWYGTDQILPDGSVIILGGKGA-----NTVEYY-PPRNGA 175 (517)
Q Consensus 102 ~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~~s~~~L~dG~v~vvGG~~~-----~~~E~y-P~~~~w 175 (517)
.+++.||..+....+..|++. +++|..+ .+++. +..++++++ +++||++||... ..+..| |.+++|
T Consensus 252 ~~~~~~g~~~~~~~~~~~~~~----~~~~~~~--~~~~~-~~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W 323 (534)
T PHA03098 252 IIYIHITMSIFTYNYITNYSP----LSEINTI--IDIHY-VYCFGSVVL-NNVIYFIGGMNKNNLSVNSVVSYDTKTKSW 323 (534)
T ss_pred ceEeecccchhhceeeecchh----hhhcccc--cCccc-cccceEEEE-CCEEEEECCCcCCCCeeccEEEEeCCCCee
Confidence 345555543223456678887 7789877 44443 334566777 899999999864 256788 999999
Q ss_pred eeccchhhccccccCCCCceEEEccCCcEEEEECC-------ceEEEeCCCCeEEEecCCCCCCCCCCCCCCceeeeecc
Q 044265 176 VSFPFLADVEDKQMDNLYPYVHLLPNGHLFIFAND-------KAVMYDYETNKIAREYPPLDGGPRNYPSAGSSAMLALE 248 (517)
Q Consensus 176 ~~~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~Gg~-------~~~~ydp~t~~w~~~~p~~p~~~r~~~~~g~~v~l~~~ 248 (517)
...+.++..| +.+..+..+|+||++||. ++++||+.+++|. .+++||. +|..+ +++.+
T Consensus 324 ~~~~~~~~~R-------~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~-~~~~lp~-~r~~~---~~~~~--- 388 (534)
T PHA03098 324 NKVPELIYPR-------KNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWR-EEPPLIF-PRYNP---CVVNV--- 388 (534)
T ss_pred eECCCCCccc-------ccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCcee-eCCCcCc-CCccc---eEEEE---
Confidence 8776654332 234566679999999994 5899999999998 5888886 45432 23332
Q ss_pred cCccccEEEEEcCCcCCcccccCCCCCCCCceeEEEecCCCCCceec-CCCcceeeeeeEEecCCcEEEEcCccCCCCCc
Q 044265 249 GDFATAVIVVCGGAQFGAFIQRSTDTPAHGSCGRIIATSADPTWEME-DMPFGRIMGDMVMLPTGDVLIINGAQAGTQGF 327 (517)
Q Consensus 249 ~~~~~gkI~v~GG~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W~~~-~m~~~R~~~~~v~lpdG~v~v~GG~~~g~~g~ 327 (517)
+++||++||..... ..++++++||+. +++|+.. +||.+|..+++++ .+++|||+||... ..
T Consensus 389 ----~~~iYv~GG~~~~~--------~~~~~v~~yd~~--t~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~-~~-- 450 (534)
T PHA03098 389 ----NNLIYVIGGISKND--------ELLKTVECFSLN--TNKWSKGSPLPISHYGGCAIY-HDGKIYVIGGISY-ID-- 450 (534)
T ss_pred ----CCEEEEECCcCCCC--------cccceEEEEeCC--CCeeeecCCCCccccCceEEE-ECCEEEEECCccC-CC--
Confidence 89999999975321 236788999988 6899987 9999999988665 5999999999752 11
Q ss_pred ccCCCCccccEEEeCCCCCCceeccCCCCCccccccceeeecCCCcEEEecCCCccccccCCCCCCceeeEEEeCCcc
Q 044265 328 EMASNPCLFPVLYRPTQPAGLRFMTLNPGTIPRMYHSTANLLPDGRVLIAGSNPHYFYKFNAEFPTELRIEAFSPEYL 405 (517)
Q Consensus 328 ~~~~~~~~~~e~YdP~t~~g~~W~~~~~~~~~R~yhs~a~ll~dG~V~v~GG~~~~~~~~~~~~~~~~~vE~y~P~yl 405 (517)
.......+++|||+++ +|+.+++++.+|..|+.+++ +++|||+||..... + ..++|+|+|..-
T Consensus 451 --~~~~~~~v~~yd~~~~---~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~------~--~~~v~~yd~~~~ 513 (534)
T PHA03098 451 --NIKVYNIVESYNPVTN---KWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEY------Y--INEIEVYDDKTN 513 (534)
T ss_pred --CCcccceEEEecCCCC---ceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCc------c--cceeEEEeCCCC
Confidence 0011235899999999 99999999999999976553 99999999976431 1 347999999864
No 20
>PLN02153 epithiospecifier protein
Probab=99.92 E-value=1.6e-23 Score=215.08 Aligned_cols=248 Identities=15% Similarity=0.136 Sum_probs=168.1
Q ss_pred CCceEeccCc--cccCcCccceeEEcCCCcEEEEcCCCC------CceEEe-CCCCCceeccchhhccccccCCCCceEE
Q 044265 127 LCDWVELDDV--ELVNGRWYGTDQILPDGSVIILGGKGA------NTVEYY-PPRNGAVSFPFLADVEDKQMDNLYPYVH 197 (517)
Q Consensus 127 t~~W~~~~~~--~m~~~R~~~s~~~L~dG~v~vvGG~~~------~~~E~y-P~~~~w~~~~~l~~t~~~~~~~~yp~~~ 197 (517)
..+|.++... .++.+|..|+++++ +++|||+||... ..+++| +.+++|...+.+.... ....+.+..
T Consensus 6 ~~~W~~~~~~~~~~P~pR~~h~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p---~~~~~~~~~ 81 (341)
T PLN02153 6 QGGWIKVEQKGGKGPGPRCSHGIAVV-GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVP---RISCLGVRM 81 (341)
T ss_pred CCeEEEecCCCCCCCCCCCcceEEEE-CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCC---CCccCceEE
Confidence 6789988221 27899999999988 899999999742 357888 8899998654332110 001223456
Q ss_pred EccCCcEEEEECC-------ceEEEeCCCCeEEEecCCC-----CCCCCCCCCCCceeeeecccCccccEEEEEcCCcCC
Q 044265 198 LLPNGHLFIFAND-------KAVMYDYETNKIAREYPPL-----DGGPRNYPSAGSSAMLALEGDFATAVIVVCGGAQFG 265 (517)
Q Consensus 198 ~~~~G~iyv~Gg~-------~~~~ydp~t~~w~~~~p~~-----p~~~r~~~~~g~~v~l~~~~~~~~gkI~v~GG~~~~ 265 (517)
++.+++||++||. ++++||+++++|+ .+++| |. +|..+ +++.+ +++|||+||.+..
T Consensus 82 ~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~-~~~~~~~~~~p~-~R~~~---~~~~~-------~~~iyv~GG~~~~ 149 (341)
T PLN02153 82 VAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWT-FLTKLDEEGGPE-ARTFH---SMASD-------ENHVYVFGGVSKG 149 (341)
T ss_pred EEECCEEEEECCCCCCCccCcEEEEECCCCEEE-EeccCCCCCCCC-Cceee---EEEEE-------CCEEEEECCccCC
Confidence 6779999999993 6899999999998 47776 32 34432 33332 8999999998632
Q ss_pred cccccCCCCCCCCceeEEEecCCCCCceec-CCC---cceeeeeeEEecCCcEEEEcCccCCC--CCcccCCCCccccEE
Q 044265 266 AFIQRSTDTPAHGSCGRIIATSADPTWEME-DMP---FGRIMGDMVMLPTGDVLIINGAQAGT--QGFEMASNPCLFPVL 339 (517)
Q Consensus 266 ~~~~~~~~~~a~~s~~~id~~~~~~~W~~~-~m~---~~R~~~~~v~lpdG~v~v~GG~~~g~--~g~~~~~~~~~~~e~ 339 (517)
.... ....++++++||+. +++|+.. +|. .+|..+++++ .+|+|||+||..... .|. .......+++
T Consensus 150 ~~~~---~~~~~~~v~~yd~~--~~~W~~l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~gG~--~~~~~~~v~~ 221 (341)
T PLN02153 150 GLMK---TPERFRTIEAYNIA--DGKWVQLPDPGENFEKRGGAGFAV-VQGKIWVVYGFATSILPGGK--SDYESNAVQF 221 (341)
T ss_pred CccC---CCcccceEEEEECC--CCeEeeCCCCCCCCCCCCcceEEE-ECCeEEEEeccccccccCCc--cceecCceEE
Confidence 2110 00134678899988 6899986 553 7888888555 599999999974210 010 0011346899
Q ss_pred EeCCCCCCceeccCCC---CCccccccceeeecCCCcEEEecCCCccc---cccCCCCCCceeeEEEeCCcc
Q 044265 340 YRPTQPAGLRFMTLNP---GTIPRMYHSTANLLPDGRVLIAGSNPHYF---YKFNAEFPTELRIEAFSPEYL 405 (517)
Q Consensus 340 YdP~t~~g~~W~~~~~---~~~~R~yhs~a~ll~dG~V~v~GG~~~~~---~~~~~~~~~~~~vE~y~P~yl 405 (517)
|||+++ +|+.+.. ++.+|..|++++ .+++|||+||..... ....+.+ ...+++|+|...
T Consensus 222 yd~~~~---~W~~~~~~g~~P~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~--~n~v~~~d~~~~ 286 (341)
T PLN02153 222 FDPASG---KWTEVETTGAKPSARSVFAHAV--VGKYIIIFGGEVWPDLKGHLGPGTL--SNEGYALDTETL 286 (341)
T ss_pred EEcCCC---cEEeccccCCCCCCcceeeeEE--ECCEEEEECcccCCccccccccccc--cccEEEEEcCcc
Confidence 999999 9998864 688999987554 489999999964210 0000111 236899999764
No 21
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.91 E-value=1.5e-22 Score=206.31 Aligned_cols=212 Identities=16% Similarity=0.113 Sum_probs=154.8
Q ss_pred ceEEcccCcccceeEEEEeeCCEEEEEeccCCCCCCcccCCCcccccccccccccCCcceEEEEECCCCCe----EEccc
Q 044265 11 TWELVLADAGISSMHTAVTRFNTVVLLDRTNIGPSRKMLGRGRCRLDRNDRALKRDCYAHSAILDLQTNQI----RPLMI 86 (517)
Q Consensus 11 ~W~~~~~~~~~~~~h~~ll~~gkv~~~gg~~~g~~~~~~~~G~~~~~~~~~~~~~d~~~~~~~yDp~t~~w----~~l~~ 86 (517)
+|..+.++...++.|.++..+++||++||.+.. . ....+++||+.+++| +.++.
T Consensus 52 ~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~~~--------~--------------~~~~v~~~d~~~~~w~~~~~~~~~ 109 (323)
T TIGR03548 52 KWVKDGQLPYEAAYGASVSVENGIYYIGGSNSS--------E--------------RFSSVYRITLDESKEELICETIGN 109 (323)
T ss_pred eEEEcccCCccccceEEEEECCEEEEEcCCCCC--------C--------------CceeEEEEEEcCCceeeeeeEcCC
Confidence 699987665555566666679999999996421 0 134688999999998 67777
Q ss_pred cCCCcccceeecCCCcEEEecCCCC--CCCeEEEecCCCCCCCCceEeccCcccc-CcCccceeEEcCCCcEEEEcCCCC
Q 044265 87 LTDTWCSSGQILADGTVLQTGGDLD--GYKKIRKFSPCEANGLCDWVELDDVELV-NGRWYGTDQILPDGSVIILGGKGA 163 (517)
Q Consensus 87 ~~~~~c~~~~~l~dG~l~v~GG~~~--g~~~v~~ydp~~~~~t~~W~~~~~~~m~-~~R~~~s~~~L~dG~v~vvGG~~~ 163 (517)
++..++..++++.+++|||+||..+ ..+.+++|||. +++|+++ .+|+ .+|..++++++ +++|||+||.+.
T Consensus 110 lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~----~~~W~~~--~~~p~~~r~~~~~~~~-~~~iYv~GG~~~ 182 (323)
T TIGR03548 110 LPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLE----TQEWFEL--PDFPGEPRVQPVCVKL-QNELYVFGGGSN 182 (323)
T ss_pred CCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCC----CCCeeEC--CCCCCCCCCcceEEEE-CCEEEEEcCCCC
Confidence 7777777777788999999999743 35789999999 8999998 6787 47888887788 899999999864
Q ss_pred ---CceEEe-CCCCCceeccchhhccccccCCCC-ceEEEccCCcEEEEECC----------------------------
Q 044265 164 ---NTVEYY-PPRNGAVSFPFLADVEDKQMDNLY-PYVHLLPNGHLFIFAND---------------------------- 210 (517)
Q Consensus 164 ---~~~E~y-P~~~~w~~~~~l~~t~~~~~~~~y-p~~~~~~~G~iyv~Gg~---------------------------- 210 (517)
..+++| |.+++|..++.+.... .+.... ...+++.+++||++||.
T Consensus 183 ~~~~~~~~yd~~~~~W~~~~~~~~~~--~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (323)
T TIGR03548 183 IAYTDGYKYSPKKNQWQKVADPTTDS--EPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYF 260 (323)
T ss_pred ccccceEEEecCCCeeEECCCCCCCC--CceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHh
Confidence 247899 9999998665432100 011111 12234458999999983
Q ss_pred -----------ceEEEeCCCCeEEEecCCCCCCCCCCCCCCceeeeecccCccccEEEEEcCCcC
Q 044265 211 -----------KAVMYDYETNKIAREYPPLDGGPRNYPSAGSSAMLALEGDFATAVIVVCGGAQF 264 (517)
Q Consensus 211 -----------~~~~ydp~t~~w~~~~p~~p~~~r~~~~~g~~v~l~~~~~~~~gkI~v~GG~~~ 264 (517)
++++||+.+++|+ .++++|..+|.. .+++.+ +++||++||..+
T Consensus 261 ~~~~~~~~~~~~v~~yd~~~~~W~-~~~~~p~~~r~~---~~~~~~-------~~~iyv~GG~~~ 314 (323)
T TIGR03548 261 LKPPEWYNWNRKILIYNVRTGKWK-SIGNSPFFARCG---AALLLT-------GNNIFSINGELK 314 (323)
T ss_pred CCCccccCcCceEEEEECCCCeee-EcccccccccCc---hheEEE-------CCEEEEEecccc
Confidence 4899999999998 477776433432 223332 899999999753
No 22
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.83 E-value=5.7e-19 Score=165.55 Aligned_cols=263 Identities=15% Similarity=0.139 Sum_probs=182.6
Q ss_pred ceEEcccCcccceeEEEEeeCCEEEEEeccCCCCCCcccCCCcccccccccccccCCcceEEEEECCCCCeEEcccc---
Q 044265 11 TWELVLADAGISSMHTAVTRFNTVVLLDRTNIGPSRKMLGRGRCRLDRNDRALKRDCYAHSAILDLQTNQIRPLMIL--- 87 (517)
Q Consensus 11 ~W~~~~~~~~~~~~h~~ll~~gkv~~~gg~~~g~~~~~~~~G~~~~~~~~~~~~~d~~~~~~~yDp~t~~w~~l~~~--- 87 (517)
.|+.-..--+.+.-|+++-...+||-+||.-.|..- .. . -.-.+.+++..+-.|+.++..
T Consensus 3 ~WTVHLeGGPrRVNHAavaVG~riYSFGGYCsGedy---------~~-------~-~piDVH~lNa~~~RWtk~pp~~~k 65 (392)
T KOG4693|consen 3 TWTVHLEGGPRRVNHAAVAVGSRIYSFGGYCSGEDY---------DA-------K-DPIDVHVLNAENYRWTKMPPGITK 65 (392)
T ss_pred eEEEEecCCcccccceeeeecceEEecCCccccccc---------cc-------C-CcceeEEeeccceeEEecCccccc
Confidence 587654445677789999999999999997654211 00 0 123577889999999988741
Q ss_pred ----------CCCcccceeecCCCcEEEecCCCC--C-CCeEEEecCCCCCCCCceEecc-CccccCcCccceeEEcCCC
Q 044265 88 ----------TDTWCSSGQILADGTVLQTGGDLD--G-YKKIRKFSPCEANGLCDWVELD-DVELVNGRWYGTDQILPDG 153 (517)
Q Consensus 88 ----------~~~~c~~~~~l~dG~l~v~GG~~~--g-~~~v~~ydp~~~~~t~~W~~~~-~~~m~~~R~~~s~~~L~dG 153 (517)
+-.+....+++.++++|+-||.++ + .+....|||+ +++|.+.. ..-++-+|-.|++|++ ++
T Consensus 66 a~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~----t~~W~~p~v~G~vPgaRDGHsAcV~-gn 140 (392)
T KOG4693|consen 66 ATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPE----TNVWKKPEVEGFVPGARDGHSACVW-GN 140 (392)
T ss_pred ccccCCCCccchhhcCceEEEEcceEEEEcCccCcccccceeeeeccc----cccccccceeeecCCccCCceeeEE-Cc
Confidence 234566667788999999999876 3 3667899999 89998641 1246788999999999 88
Q ss_pred cEEEEcCCCC----CceEEe---CCCCCceeccchhhccccccCCCCceEEEccCCcEEEEECC----------------
Q 044265 154 SVIILGGKGA----NTVEYY---PPRNGAVSFPFLADVEDKQMDNLYPYVHLLPNGHLFIFAND---------------- 210 (517)
Q Consensus 154 ~v~vvGG~~~----~~~E~y---P~~~~w~~~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~Gg~---------------- 210 (517)
.+||+||... .+-+.+ -.+-+|..+. |....+.+.-.+.+.+.++.+|+|||+
T Consensus 141 ~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~----Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~ 216 (392)
T KOG4693|consen 141 QMYIFGGYEEDAQRFSQDTHVLDFATMTWREMH----TKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCD 216 (392)
T ss_pred EEEEecChHHHHHhhhccceeEeccceeeeehh----ccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcc
Confidence 9999999753 222333 3455676431 111112222235667779999999994
Q ss_pred ceEEEeCCCCeEEEecCC---CCCCCCCCCCCCceeeeecccCccccEEEEEcCCcCCcccccCCCCCCCCceeEEEecC
Q 044265 211 KAVMYDYETNKIAREYPP---LDGGPRNYPSAGSSAMLALEGDFATAVIVVCGGAQFGAFIQRSTDTPAHGSCGRIIATS 287 (517)
Q Consensus 211 ~~~~ydp~t~~w~~~~p~---~p~~~r~~~~~g~~v~l~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~a~~s~~~id~~~ 287 (517)
....+|.+|+.|.+. |+ +|+++|+ .++-. +++++|++||++.. .. .-.+..+++||.
T Consensus 217 ~i~~ld~~T~aW~r~-p~~~~~P~GRRS----HS~fv-------Yng~~Y~FGGYng~-ln------~HfndLy~FdP~- 276 (392)
T KOG4693|consen 217 TIMALDLATGAWTRT-PENTMKPGGRRS----HSTFV-------YNGKMYMFGGYNGT-LN------VHFNDLYCFDPK- 276 (392)
T ss_pred eeEEEeccccccccC-CCCCcCCCcccc----cceEE-------EcceEEEecccchh-hh------hhhcceeecccc-
Confidence 356789999999863 43 3444443 34433 49999999999732 11 124667778877
Q ss_pred CCCCceec----CCCcceeeeeeEEecCCcEEEEcCcc
Q 044265 288 ADPTWEME----DMPFGRIMGDMVMLPTGDVLIINGAQ 321 (517)
Q Consensus 288 ~~~~W~~~----~m~~~R~~~~~v~lpdG~v~v~GG~~ 321 (517)
+..|+.. .-|.+|..+++++ .++|||++||..
T Consensus 277 -t~~W~~I~~~Gk~P~aRRRqC~~v-~g~kv~LFGGTs 312 (392)
T KOG4693|consen 277 -TSMWSVISVRGKYPSARRRQCSVV-SGGKVYLFGGTS 312 (392)
T ss_pred -cchheeeeccCCCCCcccceeEEE-ECCEEEEecCCC
Confidence 6789863 5678888888666 499999999965
No 23
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.80 E-value=6e-18 Score=158.73 Aligned_cols=255 Identities=14% Similarity=0.228 Sum_probs=171.1
Q ss_pred CCcccceeecCCCcEEEecCCCCCC-------CeEEEecCCCCCCCCceEeccC-----------ccccCcCccceeEEc
Q 044265 89 DTWCSSGQILADGTVLQTGGDLDGY-------KKIRKFSPCEANGLCDWVELDD-----------VELVNGRWYGTDQIL 150 (517)
Q Consensus 89 ~~~c~~~~~l~dG~l~v~GG~~~g~-------~~v~~ydp~~~~~t~~W~~~~~-----------~~m~~~R~~~s~~~L 150 (517)
..+...+++....+||-+||+-.|. -.+.+++.. +-.|+.+|+ .-.+..|+.|+++..
T Consensus 12 PrRVNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~----~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y 87 (392)
T KOG4693|consen 12 PRRVNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAE----NYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEY 87 (392)
T ss_pred cccccceeeeecceEEecCCcccccccccCCcceeEEeecc----ceeEEecCcccccccccCCCCccchhhcCceEEEE
Confidence 3445556667788999999974321 257788887 789998853 113456999998887
Q ss_pred CCCcEEEEcCCCC-----CceEEe-CCCCCcee---ccchhhccccccCCCCceEEEccCCcEEEEEC---------Cce
Q 044265 151 PDGSVIILGGKGA-----NTVEYY-PPRNGAVS---FPFLADVEDKQMDNLYPYVHLLPNGHLFIFAN---------DKA 212 (517)
Q Consensus 151 ~dG~v~vvGG~~~-----~~~E~y-P~~~~w~~---~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~Gg---------~~~ 212 (517)
++++|+-||++. +..-.| |++++|.. ...++..|| -+.+.+.+..+|+||| .++
T Consensus 88 -~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRD-------GHsAcV~gn~MyiFGGye~~a~~FS~d~ 159 (392)
T KOG4693|consen 88 -QDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARD-------GHSACVWGNQMYIFGGYEEDAQRFSQDT 159 (392)
T ss_pred -cceEEEEcCccCcccccceeeeeccccccccccceeeecCCccC-------CceeeEECcEEEEecChHHHHHhhhccc
Confidence 899999999975 234456 99999973 223444444 2456667999999999 357
Q ss_pred EEEeCCCCeEEEecCCCCCCCCCCCCCCceeeeecccCccccEEEEEcCCcCCc--c-cccCCCCCCCCceeEEEecCCC
Q 044265 213 VMYDYETNKIAREYPPLDGGPRNYPSAGSSAMLALEGDFATAVIVVCGGAQFGA--F-IQRSTDTPAHGSCGRIIATSAD 289 (517)
Q Consensus 213 ~~ydp~t~~w~~~~p~~p~~~r~~~~~g~~v~l~~~~~~~~gkI~v~GG~~~~~--~-~~~~~~~~a~~s~~~id~~~~~ 289 (517)
..+|..|-+|.. +-.. +.+..+.-..+++++ ++..||+||..... + ...+.|+ +....+|.. +
T Consensus 160 h~ld~~TmtWr~-~~Tk-g~PprwRDFH~a~~~-------~~~MYiFGGR~D~~gpfHs~~e~Yc---~~i~~ld~~--T 225 (392)
T KOG4693|consen 160 HVLDFATMTWRE-MHTK-GDPPRWRDFHTASVI-------DGMMYIFGGRSDESGPFHSIHEQYC---DTIMALDLA--T 225 (392)
T ss_pred eeEeccceeeee-hhcc-CCCchhhhhhhhhhc-------cceEEEeccccccCCCccchhhhhc---ceeEEEecc--c
Confidence 789999999973 4221 112122212345554 89999999985321 1 1111222 233445655 6
Q ss_pred CCceec---C-CCcceeeeeeEEecCCcEEEEcCccCCCCCcccCCCCccccEEEeCCCCCCceeccCC---CCCccccc
Q 044265 290 PTWEME---D-MPFGRIMGDMVMLPTGDVLIINGAQAGTQGFEMASNPCLFPVLYRPTQPAGLRFMTLN---PGTIPRMY 362 (517)
Q Consensus 290 ~~W~~~---~-m~~~R~~~~~v~lpdG~v~v~GG~~~g~~g~~~~~~~~~~~e~YdP~t~~g~~W~~~~---~~~~~R~y 362 (517)
..|... . .|.+|..|++-+ -||++|++||++ |.- +.-.....+|||++. .|+.+. .-+.+|.-
T Consensus 226 ~aW~r~p~~~~~P~GRRSHS~fv-Yng~~Y~FGGYn-g~l-----n~HfndLy~FdP~t~---~W~~I~~~Gk~P~aRRR 295 (392)
T KOG4693|consen 226 GAWTRTPENTMKPGGRRSHSTFV-YNGKMYMFGGYN-GTL-----NVHFNDLYCFDPKTS---MWSVISVRGKYPSARRR 295 (392)
T ss_pred cccccCCCCCcCCCcccccceEE-EcceEEEecccc-hhh-----hhhhcceeecccccc---hheeeeccCCCCCcccc
Confidence 889763 4 478899998665 499999999997 532 111235688999999 998764 45777877
Q ss_pred cceeeecCCCcEEEecCCC
Q 044265 363 HSTANLLPDGRVLIAGSNP 381 (517)
Q Consensus 363 hs~a~ll~dG~V~v~GG~~ 381 (517)
|.++ +..+||+.+||..
T Consensus 296 qC~~--v~g~kv~LFGGTs 312 (392)
T KOG4693|consen 296 QCSV--VSGGKVYLFGGTS 312 (392)
T ss_pred eeEE--EECCEEEEecCCC
Confidence 7433 3699999999964
No 24
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.59 E-value=1.5e-13 Score=146.96 Aligned_cols=258 Identities=16% Similarity=0.174 Sum_probs=180.1
Q ss_pred cccceeEEEEeeCCEEEEEeccCCCCCCcccCCCcccccccccccccCCcceEEEEECCCCCeEEccc---cCCCcccce
Q 044265 19 AGISSMHTAVTRFNTVVLLDRTNIGPSRKMLGRGRCRLDRNDRALKRDCYAHSAILDLQTNQIRPLMI---LTDTWCSSG 95 (517)
Q Consensus 19 ~~~~~~h~~ll~~gkv~~~gg~~~g~~~~~~~~G~~~~~~~~~~~~~d~~~~~~~yDp~t~~w~~l~~---~~~~~c~~~ 95 (517)
...++.|++++.+.++|++||...+ .+.. .. .+.++|..+..|..... .+-.+..+.
T Consensus 58 p~~R~~hs~~~~~~~~~vfGG~~~~---------~~~~----------~~-dl~~~d~~~~~w~~~~~~g~~p~~r~g~~ 117 (482)
T KOG0379|consen 58 PIPRAGHSAVLIGNKLYVFGGYGSG---------DRLT----------DL-DLYVLDLESQLWTKPAATGDEPSPRYGHS 117 (482)
T ss_pred cchhhccceeEECCEEEEECCCCCC---------Cccc----------cc-eeEEeecCCcccccccccCCCCCccccee
Confidence 4457789999899999999996532 1100 01 47889999999987553 222333344
Q ss_pred eecCCCcEEEecCCCC---CCCeEEEecCCCCCCCCceEeccC-ccccCcCccceeEEcCCCcEEEEcCCCCCceEEeCC
Q 044265 96 QILADGTVLQTGGDLD---GYKKIRKFSPCEANGLCDWVELDD-VELVNGRWYGTDQILPDGSVIILGGKGANTVEYYPP 171 (517)
Q Consensus 96 ~~l~dG~l~v~GG~~~---g~~~v~~ydp~~~~~t~~W~~~~~-~~m~~~R~~~s~~~L~dG~v~vvGG~~~~~~E~yP~ 171 (517)
....+.+||++||... ..+.+..||+. +++|..+.. .+++.+|++|++++. +.++||+||.+...
T Consensus 118 ~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~----t~~W~~l~~~~~~P~~r~~Hs~~~~-g~~l~vfGG~~~~~------ 186 (482)
T KOG0379|consen 118 LSAVGDKLYLFGGTDKKYRNLNELHSLDLS----TRTWSLLSPTGDPPPPRAGHSATVV-GTKLVVFGGIGGTG------ 186 (482)
T ss_pred EEEECCeEEEEccccCCCCChhheEeccCC----CCcEEEecCcCCCCCCcccceEEEE-CCEEEEECCccCcc------
Confidence 4566899999999873 13589999999 899988732 357889999999988 79999999975321
Q ss_pred CCCceeccchhhccccccCCCCceEEEccCCcEEEEECCceEEEeCCCCeEEEecCCCCCC---CCCCCCCCceeeeecc
Q 044265 172 RNGAVSFPFLADVEDKQMDNLYPYVHLLPNGHLFIFANDKAVMYDYETNKIAREYPPLDGG---PRNYPSAGSSAMLALE 248 (517)
Q Consensus 172 ~~~w~~~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~Gg~~~~~ydp~t~~w~~~~p~~p~~---~r~~~~~g~~v~l~~~ 248 (517)
..+ +++++||.++.+|.+ +.. .+. +|..+ +++.
T Consensus 187 -------~~~----------------------------ndl~i~d~~~~~W~~-~~~-~g~~P~pR~gH---~~~~---- 222 (482)
T KOG0379|consen 187 -------DSL----------------------------NDLHIYDLETSTWSE-LDT-QGEAPSPRYGH---AMVV---- 222 (482)
T ss_pred -------cce----------------------------eeeeeecccccccee-ccc-CCCCCCCCCCc---eEEE----
Confidence 001 136689999999984 422 221 34332 3333
Q ss_pred cCccccEEEEEcCCcCCcccccCCCCCCCCceeEEEecCCCCCceec----CCCcceeeeeeEEecCCcEEEEcCccCCC
Q 044265 249 GDFATAVIVVCGGAQFGAFIQRSTDTPAHGSCGRIIATSADPTWEME----DMPFGRIMGDMVMLPTGDVLIINGAQAGT 324 (517)
Q Consensus 249 ~~~~~gkI~v~GG~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W~~~----~m~~~R~~~~~v~lpdG~v~v~GG~~~g~ 324 (517)
.+.+++++||.+.+. ..+++++.+|+. +.+|... .+|.+|..|..+ ....+++++||...+.
T Consensus 223 ---~~~~~~v~gG~~~~~--------~~l~D~~~ldl~--~~~W~~~~~~g~~p~~R~~h~~~-~~~~~~~l~gG~~~~~ 288 (482)
T KOG0379|consen 223 ---VGNKLLVFGGGDDGD--------VYLNDVHILDLS--TWEWKLLPTGGDLPSPRSGHSLT-VSGDHLLLFGGGTDPK 288 (482)
T ss_pred ---ECCeEEEEeccccCC--------ceecceEeeecc--cceeeeccccCCCCCCcceeeeE-EECCEEEEEcCCcccc
Confidence 289999999987222 246788999988 5888842 678999999977 5688999999986321
Q ss_pred CCcccCCCCccccEEEeCCCCCCceeccCCC----CCccccccceeeecCCCcE
Q 044265 325 QGFEMASNPCLFPVLYRPTQPAGLRFMTLNP----GTIPRMYHSTANLLPDGRV 374 (517)
Q Consensus 325 ~g~~~~~~~~~~~e~YdP~t~~g~~W~~~~~----~~~~R~yhs~a~ll~dG~V 374 (517)
. .++.....||.++. .|+.+.. .+.+|..|...++-..++.
T Consensus 289 ~------~~l~~~~~l~~~~~---~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (482)
T KOG0379|consen 289 Q------EPLGDLYGLDLETL---VWSKVESVGVVRPSPRLGHAAELIDELGKD 333 (482)
T ss_pred c------cccccccccccccc---ceeeeeccccccccccccccceeeccCCcc
Confidence 0 13456788899988 8876543 4678899977665555543
No 25
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.43 E-value=3.3e-12 Score=129.59 Aligned_cols=268 Identities=18% Similarity=0.222 Sum_probs=167.4
Q ss_pred CCceEEcccC----cccceeEEEEeeCCEEEEEeccCCCCCCcccCCCcccccccccccccCCcceEEEEECCCCCeEEc
Q 044265 9 PGTWELVLAD----AGISSMHTAVTRFNTVVLLDRTNIGPSRKMLGRGRCRLDRNDRALKRDCYAHSAILDLQTNQIRPL 84 (517)
Q Consensus 9 ~g~W~~~~~~----~~~~~~h~~ll~~gkv~~~gg~~~g~~~~~~~~G~~~~~~~~~~~~~d~~~~~~~yDp~t~~w~~l 84 (517)
.=+|..|... ...+..|-++.....+++|||-+.| + .....+|+..+++|..-
T Consensus 16 ~~rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNEG---i--------------------iDELHvYNTatnqWf~P 72 (830)
T KOG4152|consen 16 VVRWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNEG---I--------------------IDELHVYNTATNQWFAP 72 (830)
T ss_pred ccceEEEecccCCCCCccccchheeeeeeEEEecCCccc---c--------------------hhhhhhhccccceeecc
Confidence 3579888643 3455678888888899999985433 1 11356899999999865
Q ss_pred cccCC--CcccceeecCCC-cEEEecCCCC-CCCeEEEecCCCCCCCCceEeccC-----ccccCcCccceeEEcCCCcE
Q 044265 85 MILTD--TWCSSGQILADG-TVLQTGGDLD-GYKKIRKFSPCEANGLCDWVELDD-----VELVNGRWYGTDQILPDGSV 155 (517)
Q Consensus 85 ~~~~~--~~c~~~~~l~dG-~l~v~GG~~~-g~~~v~~ydp~~~~~t~~W~~~~~-----~~m~~~R~~~s~~~L~dG~v 155 (517)
..--| .-|++.-++.|| +||++||..+ |.-+-+.|..+.+ .-.|.++.+ ..++-+|-.|+-... .+|-
T Consensus 73 avrGDiPpgcAA~GfvcdGtrilvFGGMvEYGkYsNdLYELQas--RWeWkrlkp~~p~nG~pPCPRlGHSFsl~-gnKc 149 (830)
T KOG4152|consen 73 AVRGDIPPGCAAFGFVCDGTRILVFGGMVEYGKYSNDLYELQAS--RWEWKRLKPKTPKNGPPPCPRLGHSFSLV-GNKC 149 (830)
T ss_pred hhcCCCCCchhhcceEecCceEEEEccEeeeccccchHHHhhhh--hhhHhhcCCCCCCCCCCCCCccCceeEEe-ccEe
Confidence 54322 457776666665 7999999865 4455667877632 345666521 346678999987776 7999
Q ss_pred EEEcCCCC------Cce-----EEe-----CCCC--CceeccchhhccccccCCCCceEEEcc---C---CcEEEEECC-
Q 044265 156 IILGGKGA------NTV-----EYY-----PPRN--GAVSFPFLADVEDKQMDNLYPYVHLLP---N---GHLFIFAND- 210 (517)
Q Consensus 156 ~vvGG~~~------~~~-----E~y-----P~~~--~w~~~~~l~~t~~~~~~~~yp~~~~~~---~---G~iyv~Gg~- 210 (517)
|++||..+ +++ ++| |-.. .|.. |. +....+.....|.++.. | .|++++||-
T Consensus 150 YlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~i-p~---t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~ 225 (830)
T KOG4152|consen 150 YLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDI-PI---TYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMS 225 (830)
T ss_pred EEeccccccccCcccccchhhcceEEEEeccCCceEEEec-cc---ccCCCCCCcccceeEEEEeccCCcceEEEEcccc
Confidence 99999743 122 222 1111 2431 10 11011111222344433 3 379999983
Q ss_pred -----ceEEEeCCCCeEEEecCCCCCC---CCCCCCCCceeeeecccCccccEEEEEcCCcC---Ccc--cccCCCCCCC
Q 044265 211 -----KAVMYDYETNKIAREYPPLDGG---PRNYPSAGSSAMLALEGDFATAVIVVCGGAQF---GAF--IQRSTDTPAH 277 (517)
Q Consensus 211 -----~~~~ydp~t~~w~~~~p~~p~~---~r~~~~~g~~v~l~~~~~~~~gkI~v~GG~~~---~~~--~~~~~~~~a~ 277 (517)
+.|.+|..+-.|.+ |.+.+- +|..+ ++++. ++|.||+||.-. ... ...++--.++
T Consensus 226 G~RLgDLW~Ldl~Tl~W~k--p~~~G~~PlPRSLH---sa~~I-------GnKMyvfGGWVPl~~~~~~~~~hekEWkCT 293 (830)
T KOG4152|consen 226 GCRLGDLWTLDLDTLTWNK--PSLSGVAPLPRSLH---SATTI-------GNKMYVFGGWVPLVMDDVKVATHEKEWKCT 293 (830)
T ss_pred cccccceeEEecceeeccc--ccccCCCCCCcccc---cceee-------cceeEEecceeeeeccccccccccceeeec
Confidence 57888999999974 333221 36553 34442 899999999731 010 0011111345
Q ss_pred CceeEEEecCCCCCceec--------CCCcceeeeeeEEecCCcEEEEcCcc
Q 044265 278 GSCGRIIATSADPTWEME--------DMPFGRIMGDMVMLPTGDVLIINGAQ 321 (517)
Q Consensus 278 ~s~~~id~~~~~~~W~~~--------~m~~~R~~~~~v~lpdG~v~v~GG~~ 321 (517)
++..++++. +..|+.. ..|.+|..|+++++ +.++|+--|.+
T Consensus 294 ssl~clNld--t~~W~tl~~d~~ed~tiPR~RAGHCAvAi-gtRlYiWSGRD 342 (830)
T KOG4152|consen 294 SSLACLNLD--TMAWETLLMDTLEDNTIPRARAGHCAVAI-GTRLYIWSGRD 342 (830)
T ss_pred cceeeeeec--chheeeeeeccccccccccccccceeEEe-ccEEEEEeccc
Confidence 666677776 6789752 36788999997775 99999999987
No 26
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.41 E-value=1.1e-11 Score=132.62 Aligned_cols=207 Identities=16% Similarity=0.165 Sum_probs=144.0
Q ss_pred cccCcCccceeEEcCCCcEEEEcCCCCC----ceEEe---CCCCCceeccchhhccccccCCCCceEEEccCCcEEEEEC
Q 044265 137 ELVNGRWYGTDQILPDGSVIILGGKGAN----TVEYY---PPRNGAVSFPFLADVEDKQMDNLYPYVHLLPNGHLFIFAN 209 (517)
Q Consensus 137 ~m~~~R~~~s~~~L~dG~v~vvGG~~~~----~~E~y---P~~~~w~~~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~Gg 209 (517)
..+.+|+.|+++.. +.++||+||.... ..++| -....|..... .. ..+...+-+...+.+.+||++||
T Consensus 56 ~~p~~R~~hs~~~~-~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~-~g---~~p~~r~g~~~~~~~~~l~lfGG 130 (482)
T KOG0379|consen 56 VGPIPRAGHSAVLI-GNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAA-TG---DEPSPRYGHSLSAVGDKLYLFGG 130 (482)
T ss_pred CCcchhhccceeEE-CCEEEEECCCCCCCccccceeEEeecCCcccccccc-cC---CCCCcccceeEEEECCeEEEEcc
Confidence 46678999999888 8999999997642 11355 23345642211 11 11233455566677899999999
Q ss_pred C--------ceEEEeCCCCeEEEecCCCCC--CCCCCCCCCceeeeecccCccccEEEEEcCCcCCcccccCCCCCCCCc
Q 044265 210 D--------KAVMYDYETNKIAREYPPLDG--GPRNYPSAGSSAMLALEGDFATAVIVVCGGAQFGAFIQRSTDTPAHGS 279 (517)
Q Consensus 210 ~--------~~~~ydp~t~~w~~~~p~~p~--~~r~~~~~g~~v~l~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~a~~s 279 (517)
. .+..||..+++|.. +.+... .+|.. +++++ .+.++||+||.+... ..+++
T Consensus 131 ~~~~~~~~~~l~~~d~~t~~W~~-l~~~~~~P~~r~~---Hs~~~-------~g~~l~vfGG~~~~~--------~~~nd 191 (482)
T KOG0379|consen 131 TDKKYRNLNELHSLDLSTRTWSL-LSPTGDPPPPRAG---HSATV-------VGTKLVVFGGIGGTG--------DSLND 191 (482)
T ss_pred ccCCCCChhheEeccCCCCcEEE-ecCcCCCCCCccc---ceEEE-------ECCEEEEECCccCcc--------cceee
Confidence 4 57899999999984 433221 13433 24444 289999999986321 14788
Q ss_pred eeEEEecCCCCCceec----CCCcceeeeeeEEecCCcEEEEcCccCCCCCcccCCCCccccEEEeCCCCCCceeccCC-
Q 044265 280 CGRIIATSADPTWEME----DMPFGRIMGDMVMLPTGDVLIINGAQAGTQGFEMASNPCLFPVLYRPTQPAGLRFMTLN- 354 (517)
Q Consensus 280 ~~~id~~~~~~~W~~~----~m~~~R~~~~~v~lpdG~v~v~GG~~~g~~g~~~~~~~~~~~e~YdP~t~~g~~W~~~~- 354 (517)
+++||+. +.+|... +-|.||..|.+++ .++++|++||...+. .....+.++|-.+- +|..+.
T Consensus 192 l~i~d~~--~~~W~~~~~~g~~P~pR~gH~~~~-~~~~~~v~gG~~~~~-------~~l~D~~~ldl~~~---~W~~~~~ 258 (482)
T KOG0379|consen 192 LHIYDLE--TSTWSELDTQGEAPSPRYGHAMVV-VGNKLLVFGGGDDGD-------VYLNDVHILDLSTW---EWKLLPT 258 (482)
T ss_pred eeeeccc--cccceecccCCCCCCCCCCceEEE-ECCeEEEEeccccCC-------ceecceEeeecccc---eeeeccc
Confidence 9999998 5789863 6788999999766 599999999976222 12335789999998 998654
Q ss_pred --CCCccccccceeeecCCCcEEEecCCCc
Q 044265 355 --PGTIPRMYHSTANLLPDGRVLIAGSNPH 382 (517)
Q Consensus 355 --~~~~~R~yhs~a~ll~dG~V~v~GG~~~ 382 (517)
..+.+|++|+.+ ...-.+++.||...
T Consensus 259 ~g~~p~~R~~h~~~--~~~~~~~l~gG~~~ 286 (482)
T KOG0379|consen 259 GGDLPSPRSGHSLT--VSGDHLLLFGGGTD 286 (482)
T ss_pred cCCCCCCcceeeeE--EECCEEEEEcCCcc
Confidence 578999999866 34677888888765
No 27
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.28 E-value=1.6e-10 Score=115.15 Aligned_cols=225 Identities=16% Similarity=0.199 Sum_probs=148.7
Q ss_pred ceEEEEECCCCCeEEccc--cCCCcccceee-cCCCcEEEecCCCC--------CCCeEEEecCCCCCCCCceEeccCcc
Q 044265 69 AHSAILDLQTNQIRPLMI--LTDTWCSSGQI-LADGTVLQTGGDLD--------GYKKIRKFSPCEANGLCDWVELDDVE 137 (517)
Q Consensus 69 ~~~~~yDp~t~~w~~l~~--~~~~~c~~~~~-l~dG~l~v~GG~~~--------g~~~v~~ydp~~~~~t~~W~~~~~~~ 137 (517)
.....||..+++|+.+.. .+.++|+++++ .+.|.++++||... -.+..++||.. +++|.++....
T Consensus 98 ndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~----trkweql~~~g 173 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLK----TRKWEQLEFGG 173 (521)
T ss_pred eeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeec----cchheeeccCC
Confidence 357789999999998764 46678887765 45689999999642 14689999999 89999883234
Q ss_pred ccCcCccceeEEcCCCcEEEEcCCCCCceEEeCCCCCceeccchhhccccccCCCCceEEEccCCcEEEEECCceEEEeC
Q 044265 138 LVNGRWYGTDQILPDGSVIILGGKGANTVEYYPPRNGAVSFPFLADVEDKQMDNLYPYVHLLPNGHLFIFANDKAVMYDY 217 (517)
Q Consensus 138 m~~~R~~~s~~~L~dG~v~vvGG~~~~~~E~yP~~~~w~~~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~Gg~~~~~ydp 217 (517)
-+.+|..|-+++. ..+++++||....+ +.. .+| +++.+||.
T Consensus 174 ~PS~RSGHRMvaw-K~~lilFGGFhd~n----------------r~y------~Yy----------------NDvy~FdL 214 (521)
T KOG1230|consen 174 GPSPRSGHRMVAW-KRQLILFGGFHDSN----------------RDY------IYY----------------NDVYAFDL 214 (521)
T ss_pred CCCCCccceeEEe-eeeEEEEcceecCC----------------Cce------EEe----------------eeeEEEec
Confidence 5688999999988 78999999964321 010 011 34679999
Q ss_pred CCCeEEEecCCCCCCCCCCCCCCcee-eeecccCccccEEEEEcCCcCCccccc-CCCCCCCCceeEEEecCC-CCC--c
Q 044265 218 ETNKIAREYPPLDGGPRNYPSAGSSA-MLALEGDFATAVIVVCGGAQFGAFIQR-STDTPAHGSCGRIIATSA-DPT--W 292 (517)
Q Consensus 218 ~t~~w~~~~p~~p~~~r~~~~~g~~v-~l~~~~~~~~gkI~v~GG~~~~~~~~~-~~~~~a~~s~~~id~~~~-~~~--W 292 (517)
.+-+|++ +.+ ++. .--|++|... +.| .+.|+|.||+........ .-. ...+....+++.+. .++ |
T Consensus 215 dtykW~K-lep-sga-~PtpRSGcq~~vtp------qg~i~vyGGYsK~~~kK~~dKG-~~hsDmf~L~p~~~~~dKw~W 284 (521)
T KOG1230|consen 215 DTYKWSK-LEP-SGA-GPTPRSGCQFSVTP------QGGIVVYGGYSKQRVKKDVDKG-TRHSDMFLLKPEDGREDKWVW 284 (521)
T ss_pred cceeeee-ccC-CCC-CCCCCCcceEEecC------CCcEEEEcchhHhhhhhhhhcC-ceeeeeeeecCCcCCCcceeE
Confidence 9999996 433 432 1123334432 233 799999999864211000 000 12456677887763 334 4
Q ss_pred eec-C--C-CcceeeeeeEEecCCcEEEEcCccCCCCCcccCCCC-----ccccEEEeCCCCCCceeccC
Q 044265 293 EME-D--M-PFGRIMGDMVMLPTGDVLIINGAQAGTQGFEMASNP-----CLFPVLYRPTQPAGLRFMTL 353 (517)
Q Consensus 293 ~~~-~--m-~~~R~~~~~v~lpdG~v~v~GG~~~g~~g~~~~~~~-----~~~~e~YdP~t~~g~~W~~~ 353 (517)
+.. + | |.||+..+.++.++++-|.+||... .. ...+. ......||-..+ +|...
T Consensus 285 ~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D-~e---eeeEsl~g~F~NDLy~fdlt~n---rW~~~ 347 (521)
T KOG1230|consen 285 TKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCD-LE---EEEESLSGEFFNDLYFFDLTRN---RWSEG 347 (521)
T ss_pred eeccCCCCCCCCCCceeEEEecCCceEEecceec-cc---ccchhhhhhhhhhhhheecccc---hhhHh
Confidence 543 2 2 7899999888889999999999752 11 00000 113467899999 99753
No 28
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.24 E-value=2.2e-10 Score=116.47 Aligned_cols=276 Identities=13% Similarity=0.086 Sum_probs=167.0
Q ss_pred CCeEEccc----cCCCcccceeecCCCcEEEecCCCCC-CCeEEEecCCCCCCCCceEec-cCccccCcCccceeEEcCC
Q 044265 79 NQIRPLMI----LTDTWCSSGQILADGTVLQTGGDLDG-YKKIRKFSPCEANGLCDWVEL-DDVELVNGRWYGTDQILPD 152 (517)
Q Consensus 79 ~~w~~l~~----~~~~~c~~~~~l~dG~l~v~GG~~~g-~~~v~~ydp~~~~~t~~W~~~-~~~~m~~~R~~~s~~~L~d 152 (517)
-.|+.+.. .+..+..+-++..-..|+|+||-++| .....+|+.. +++|..- ...+.+.+-.-++.+.+ +
T Consensus 17 ~rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNEGiiDELHvYNTa----tnqWf~PavrGDiPpgcAA~Gfvcd-G 91 (830)
T KOG4152|consen 17 VRWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNEGIIDELHVYNTA----TNQWFAPAVRGDIPPGCAAFGFVCD-G 91 (830)
T ss_pred cceEEEecccCCCCCccccchheeeeeeEEEecCCcccchhhhhhhccc----cceeecchhcCCCCCchhhcceEec-C
Confidence 35776552 23344444566677889999998776 4788899998 8999753 01245545445565666 7
Q ss_pred CcEEEEcCCCC---CceEEe-CCCCCce--eccchhhccccccCCCCceEEEccCCcEEEEECCceEEEeCCCC------
Q 044265 153 GSVIILGGKGA---NTVEYY-PPRNGAV--SFPFLADVEDKQMDNLYPYVHLLPNGHLFIFANDKAVMYDYETN------ 220 (517)
Q Consensus 153 G~v~vvGG~~~---~~~E~y-P~~~~w~--~~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~Gg~~~~~ydp~t~------ 220 (517)
.|||++||+.+ .+-|+| -....|. .+..-.......+...--|.+.+...|-|+|||-.-+.=||+.|
T Consensus 92 trilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLn 171 (830)
T KOG4152|consen 92 TRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLN 171 (830)
T ss_pred ceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhc
Confidence 79999999854 345666 4444553 32111111112344445567888899999999832222223222
Q ss_pred --------------eEEEec--CCCCCCCCCCCCCCceeeeecccCccccEEEEEcCCcCCcccccCCCCCCCCceeEEE
Q 044265 221 --------------KIAREY--PPLDGGPRNYPSAGSSAMLALEGDFATAVIVVCGGAQFGAFIQRSTDTPAHGSCGRII 284 (517)
Q Consensus 221 --------------~w~~~~--p~~p~~~r~~~~~g~~v~l~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~a~~s~~~id 284 (517)
.|.... -.+|. +|.. +.+|.+-- .+....|++|+||.. +. .+...+.+|
T Consensus 172 DlY~leL~~Gsgvv~W~ip~t~Gv~P~-pRES---HTAViY~e-KDs~~skmvvyGGM~-G~---------RLgDLW~Ld 236 (830)
T KOG4152|consen 172 DLYILELRPGSGVVAWDIPITYGVLPP-PRES---HTAVIYTE-KDSKKSKMVVYGGMS-GC---------RLGDLWTLD 236 (830)
T ss_pred ceEEEEeccCCceEEEecccccCCCCC-Cccc---ceeEEEEe-ccCCcceEEEEcccc-cc---------cccceeEEe
Confidence 343111 01222 3443 45665421 112257899999987 32 367778888
Q ss_pred ecCCCCCceec----CCCcceeeeeeEEecCCcEEEEcCccC----C--CCCcccCCCCccccEEEeCCCCCCceeccCC
Q 044265 285 ATSADPTWEME----DMPFGRIMGDMVMLPTGDVLIINGAQA----G--TQGFEMASNPCLFPVLYRPTQPAGLRFMTLN 354 (517)
Q Consensus 285 ~~~~~~~W~~~----~m~~~R~~~~~v~lpdG~v~v~GG~~~----g--~~g~~~~~~~~~~~e~YdP~t~~g~~W~~~~ 354 (517)
++ +-.|.+. --|.+|+.|.+++ ..+|+||+||.-- . .+..+..-....+.-|+|-++. +|+.+-
T Consensus 237 l~--Tl~W~kp~~~G~~PlPRSLHsa~~-IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~---~W~tl~ 310 (830)
T KOG4152|consen 237 LD--TLTWNKPSLSGVAPLPRSLHSATT-IGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTM---AWETLL 310 (830)
T ss_pred cc--eeecccccccCCCCCCccccccee-ecceeEEecceeeeeccccccccccceeeeccceeeeeecch---heeeee
Confidence 87 5789763 3478899999655 5999999999531 0 0000001112335678999999 998642
Q ss_pred -------CCCccccccceeeecCCCcEEEecCCCc
Q 044265 355 -------PGTIPRMYHSTANLLPDGRVLIAGSNPH 382 (517)
Q Consensus 355 -------~~~~~R~yhs~a~ll~dG~V~v~GG~~~ 382 (517)
..+.+|..|.++. .+-|+|+=-|.+.
T Consensus 311 ~d~~ed~tiPR~RAGHCAvA--igtRlYiWSGRDG 343 (830)
T KOG4152|consen 311 MDTLEDNTIPRARAGHCAVA--IGTRLYIWSGRDG 343 (830)
T ss_pred eccccccccccccccceeEE--eccEEEEEeccch
Confidence 2566778886443 5889999888764
No 29
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.23 E-value=2.5e-10 Score=113.80 Aligned_cols=242 Identities=17% Similarity=0.237 Sum_probs=155.6
Q ss_pred CcEEEecCCC-CC-----CCeEEEecCCCCCCCCceEeccCccccCcCccceeEEcCCCcEEEEcCCCCCceEEeCCCCC
Q 044265 101 GTVLQTGGDL-DG-----YKKIRKFSPCEANGLCDWVELDDVELVNGRWYGTDQILPDGSVIILGGKGANTVEYYPPRNG 174 (517)
Q Consensus 101 G~l~v~GG~~-~g-----~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~~s~~~L~dG~v~vvGG~~~~~~E~yP~~~~ 174 (517)
..|+++||.. +| .+....||.. +++|..+....-+.+|..|.+++.+.|.+++.||.-.. |..
T Consensus 79 eELilfGGEf~ngqkT~vYndLy~Yn~k----~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaS-----Pnq-- 147 (521)
T KOG1230|consen 79 EELILFGGEFYNGQKTHVYNDLYSYNTK----KNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFAS-----PNQ-- 147 (521)
T ss_pred ceeEEecceeecceeEEEeeeeeEEecc----ccceeEeccCCCcCCCccceeEEeccCeEEEeccccCC-----cch--
Confidence 4899999953 23 2567788888 89999984445667899999999998999999995321 111
Q ss_pred ceeccchhhccccccCCCCceEEEccCCcEEEEECCceEEEeCCCCeEEEecCCCCCC--CCCCCCCCceeeeecccCcc
Q 044265 175 AVSFPFLADVEDKQMDNLYPYVHLLPNGHLFIFANDKAVMYDYETNKIAREYPPLDGG--PRNYPSAGSSAMLALEGDFA 252 (517)
Q Consensus 175 w~~~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~Gg~~~~~ydp~t~~w~~~~p~~p~~--~r~~~~~g~~v~l~~~~~~~ 252 (517)
. .+|+. .+.|+||.++++|++ +. .++. +|..+ -.|+ +
T Consensus 148 --------~-------qF~HY--------------kD~W~fd~~trkweq-l~-~~g~PS~RSGH---RMva-------w 186 (521)
T KOG1230|consen 148 --------E-------QFHHY--------------KDLWLFDLKTRKWEQ-LE-FGGGPSPRSGH---RMVA-------W 186 (521)
T ss_pred --------h-------hhhhh--------------hheeeeeeccchhee-ec-cCCCCCCCccc---eeEE-------e
Confidence 0 01111 247799999999985 42 2322 34322 2232 4
Q ss_pred ccEEEEEcCCcCCcccccCCCCCCCCceeEEEecCCCCCceec--C--CCcceeeeeeEEecCCcEEEEcCccCCCCCcc
Q 044265 253 TAVIVVCGGAQFGAFIQRSTDTPAHGSCGRIIATSADPTWEME--D--MPFGRIMGDMVMLPTGDVLIINGAQAGTQGFE 328 (517)
Q Consensus 253 ~gkI~v~GG~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W~~~--~--m~~~R~~~~~v~lpdG~v~v~GG~~~g~~g~~ 328 (517)
+.+|+++||.-.. .+. ..-.+.++++|+. +-+|+.. + -|.+|+.+++.+.|+|.|+|.||+.+-..--.
T Consensus 187 K~~lilFGGFhd~-nr~----y~YyNDvy~FdLd--tykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~ 259 (521)
T KOG1230|consen 187 KRQLILFGGFHDS-NRD----YIYYNDVYAFDLD--TYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKD 259 (521)
T ss_pred eeeEEEEcceecC-CCc----eEEeeeeEEEecc--ceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhh
Confidence 8999999997421 110 0235778899987 6799875 2 48899999999999999999999863210000
Q ss_pred -cCCCCccccEEEeCCCCCCc--eeccCCC---CCccccccceeeecCCCcEEEecCCCccccccCCCCCCceeeEEEeC
Q 044265 329 -MASNPCLFPVLYRPTQPAGL--RFMTLNP---GTIPRMYHSTANLLPDGRVLIAGSNPHYFYKFNAEFPTELRIEAFSP 402 (517)
Q Consensus 329 -~~~~~~~~~e~YdP~t~~g~--~W~~~~~---~~~~R~yhs~a~ll~dG~V~v~GG~~~~~~~~~~~~~~~~~vE~y~P 402 (517)
+.......+.+-+|+.+.-. .|+.+.+ -+.||...|+++ .++++-|.+||-... . .-...+.-|+|+-
T Consensus 260 ~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~v-a~n~kal~FGGV~D~----e-eeeEsl~g~F~ND 333 (521)
T KOG1230|consen 260 VDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAV-AKNHKALFFGGVCDL----E-EEEESLSGEFFND 333 (521)
T ss_pred hhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEE-ecCCceEEecceecc----c-ccchhhhhhhhhh
Confidence 00011223566678773211 5777654 478999998664 699999999995321 0 0001234566666
Q ss_pred CccCC
Q 044265 403 EYLSS 407 (517)
Q Consensus 403 ~yl~~ 407 (517)
-|+|.
T Consensus 334 Ly~fd 338 (521)
T KOG1230|consen 334 LYFFD 338 (521)
T ss_pred hhhee
Confidence 66543
No 30
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.15 E-value=3.8e-09 Score=104.16 Aligned_cols=263 Identities=17% Similarity=0.196 Sum_probs=161.4
Q ss_pred ccccCCCcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCcccc-CcCccceeEEcCCCcEEEEcCCC
Q 044265 84 LMILTDTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELV-NGRWYGTDQILPDGSVIILGGKG 162 (517)
Q Consensus 84 l~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~-~~R~~~s~~~L~dG~v~vvGG~~ 162 (517)
++..+..+-++...+.+..+||-=|.. ..+-...|... ....|++. +..+ .+|-.+.++++ +|++|+.||..
T Consensus 30 lPdlPvg~KnG~Ga~ig~~~YVGLGs~--G~afy~ldL~~--~~k~W~~~--a~FpG~~rnqa~~a~~-~~kLyvFgG~G 102 (381)
T COG3055 30 LPDLPVGFKNGAGALIGDTVYVGLGSA--GTAFYVLDLKK--PGKGWTKI--ADFPGGARNQAVAAVI-GGKLYVFGGYG 102 (381)
T ss_pred CCCCCccccccccceecceEEEEeccC--Cccceehhhhc--CCCCceEc--ccCCCcccccchheee-CCeEEEeeccc
Confidence 344445555454455555777755532 23445556553 25789998 5555 57888888888 99999999975
Q ss_pred C---------CceEEe-CCCCCceeccchhhccccccCCCCceEEEccCC-cEEEEECC---------------------
Q 044265 163 A---------NTVEYY-PPRNGAVSFPFLADVEDKQMDNLYPYVHLLPNG-HLFIFAND--------------------- 210 (517)
Q Consensus 163 ~---------~~~E~y-P~~~~w~~~~~l~~t~~~~~~~~yp~~~~~~~G-~iyv~Gg~--------------------- 210 (517)
. .++-+| |..|+|..+.-...+ .+--+....+++ +|+++||-
T Consensus 103 k~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~------gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~ 176 (381)
T COG3055 103 KSVSSSPQVFNDAYRYDPSTNSWHKLDTRSPT------GLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEA 176 (381)
T ss_pred cCCCCCceEeeeeEEecCCCChhheecccccc------ccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHH
Confidence 3 134556 999999865322111 122234444555 99999981
Q ss_pred --------------------ceEEEeCCCCeEEEecCCCCCCCCCCCCCCceeeeecccCccccEEEEEcCCcCCccccc
Q 044265 211 --------------------KAVMYDYETNKIAREYPPLDGGPRNYPSAGSSAMLALEGDFATAVIVVCGGAQFGAFIQR 270 (517)
Q Consensus 211 --------------------~~~~ydp~t~~w~~~~p~~p~~~r~~~~~g~~v~l~~~~~~~~gkI~v~GG~~~~~~~~~ 270 (517)
.+..|||.++.|. .+-..| .++.+|++++. -++++.++-|.-....
T Consensus 177 ~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~-~~G~~p----f~~~aGsa~~~------~~n~~~lInGEiKpGL--- 242 (381)
T COG3055 177 VDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWR-NLGENP----FYGNAGSAVVI------KGNKLTLINGEIKPGL--- 242 (381)
T ss_pred HHHHHHHHhCCCHHHhcccccccccccccchhh-hcCcCc----ccCccCcceee------cCCeEEEEcceecCCc---
Confidence 3578999999997 344334 34555776654 2677888888643111
Q ss_pred CCCCCCCCceeEEEecCCCCCceec-CCCcceeee------eeEEecCCcEEEEcCccCCC------CCcccCCCC---c
Q 044265 271 STDTPAHGSCGRIIATSADPTWEME-DMPFGRIMG------DMVMLPTGDVLIINGAQAGT------QGFEMASNP---C 334 (517)
Q Consensus 271 ~~~~~a~~s~~~id~~~~~~~W~~~-~m~~~R~~~------~~v~lpdG~v~v~GG~~~g~------~g~~~~~~~---~ 334 (517)
.+..+.+.+.....-+|... ++|.+-... ...--.+|.++|.||+..-- .|.-.+.+- .
T Consensus 243 -----Rt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~ 317 (381)
T COG3055 243 -----RTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKS 317 (381)
T ss_pred -----cccceeEEEeccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhh
Confidence 13334567777657789886 555332211 11112488999999975211 111112111 1
Q ss_pred cccEEEeCCCCCCceeccCCCCCccccccceeeecCCCcEEEecCCCcc
Q 044265 335 LFPVLYRPTQPAGLRFMTLNPGTIPRMYHSTANLLPDGRVLIAGSNPHY 383 (517)
Q Consensus 335 ~~~e~YdP~t~~g~~W~~~~~~~~~R~yhs~a~ll~dG~V~v~GG~~~~ 383 (517)
.+-|+|--..+ .|+.+..++.++.|. +.+.-.+.||++||+...
T Consensus 318 w~~~Vy~~d~g---~Wk~~GeLp~~l~YG--~s~~~nn~vl~IGGE~~~ 361 (381)
T COG3055 318 WNSEVYIFDNG---SWKIVGELPQGLAYG--VSLSYNNKVLLIGGETSG 361 (381)
T ss_pred hhceEEEEcCC---ceeeecccCCCccce--EEEecCCcEEEEccccCC
Confidence 12344444477 999999999999985 445678899999998654
No 31
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=99.05 E-value=3.3e-09 Score=102.29 Aligned_cols=136 Identities=24% Similarity=0.395 Sum_probs=88.6
Q ss_pred eEEEeCCCCeEEEecCCCCCCCCCCCCCCceeeeecccCccccEEEEEcCCcCCcccccCCCCCCCCceeEEEecC--CC
Q 044265 212 AVMYDYETNKIAREYPPLDGGPRNYPSAGSSAMLALEGDFATAVIVVCGGAQFGAFIQRSTDTPAHGSCGRIIATS--AD 289 (517)
Q Consensus 212 ~~~ydp~t~~w~~~~p~~p~~~r~~~~~g~~v~l~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~a~~s~~~id~~~--~~ 289 (517)
+.+||+.++++. .+.. . ...++ ++.++|+ +|+++++||...+ ...+..|++.. ..
T Consensus 48 s~~yD~~tn~~r-pl~v-~--td~FC--Sgg~~L~------dG~ll~tGG~~~G-----------~~~ir~~~p~~~~~~ 104 (243)
T PF07250_consen 48 SVEYDPNTNTFR-PLTV-Q--TDTFC--SGGAFLP------DGRLLQTGGDNDG-----------NKAIRIFTPCTSDGT 104 (243)
T ss_pred EEEEecCCCcEE-eccC-C--CCCcc--cCcCCCC------CCCEEEeCCCCcc-----------ccceEEEecCCCCCC
Confidence 568999999986 4532 2 23344 3334666 8999999998633 22334466553 24
Q ss_pred CCceec--CCCcceeeeeeEEecCCcEEEEcCccCCCCCcccCCCCccccEEEeCCCCC--CceeccCCCC--Ccccccc
Q 044265 290 PTWEME--DMPFGRIMGDMVMLPTGDVLIINGAQAGTQGFEMASNPCLFPVLYRPTQPA--GLRFMTLNPG--TIPRMYH 363 (517)
Q Consensus 290 ~~W~~~--~m~~~R~~~~~v~lpdG~v~v~GG~~~g~~g~~~~~~~~~~~e~YdP~t~~--g~~W~~~~~~--~~~R~yh 363 (517)
..|.+. .|..+|.+++++.|+||+|+|+||... .+.|.|.++... ...|..+... ..+..+.
T Consensus 105 ~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~------------~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlY 172 (243)
T PF07250_consen 105 CDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNN------------PTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLY 172 (243)
T ss_pred CCceECcccccCCCccccceECCCCCEEEEeCcCC------------CcccccCCccCCCCceeeecchhhhccCccccC
Confidence 679875 699999999999999999999999761 134666553321 1133323221 2333333
Q ss_pred ceeeecCCCcEEEecCCCc
Q 044265 364 STANLLPDGRVLIAGSNPH 382 (517)
Q Consensus 364 s~a~ll~dG~V~v~GG~~~ 382 (517)
--..|+|||+||+.+....
T Consensus 173 P~~~llPdG~lFi~an~~s 191 (243)
T PF07250_consen 173 PFVHLLPDGNLFIFANRGS 191 (243)
T ss_pred ceEEEcCCCCEEEEEcCCc
Confidence 3467889999999997643
No 32
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.92 E-value=4.7e-08 Score=96.58 Aligned_cols=220 Identities=14% Similarity=0.154 Sum_probs=130.2
Q ss_pred CceEEcccCcc-cceeEEEEeeCCEEEEEeccCCCCCCcccCCCcccccccccccccCCcceEEEEECCCCCeEEcccc-
Q 044265 10 GTWELVLADAG-ISSMHTAVTRFNTVVLLDRTNIGPSRKMLGRGRCRLDRNDRALKRDCYAHSAILDLQTNQIRPLMIL- 87 (517)
Q Consensus 10 g~W~~~~~~~~-~~~~h~~ll~~gkv~~~gg~~~g~~~~~~~~G~~~~~~~~~~~~~d~~~~~~~yDp~t~~w~~l~~~- 87 (517)
-.|+.++.=.+ -+-..+....++|+|++||..-..+ +.. .....+..|||.+++|..+...
T Consensus 70 k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~------~~~-----------~~~nd~Y~y~p~~nsW~kl~t~s 132 (381)
T COG3055 70 KGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVS------SSP-----------QVFNDAYRYDPSTNSWHKLDTRS 132 (381)
T ss_pred CCceEcccCCCcccccchheeeCCeEEEeeccccCCC------CCc-----------eEeeeeEEecCCCChhheecccc
Confidence 35887763222 2333455668999999999642111 111 1234688999999999998753
Q ss_pred CCCcccceeecCCC-cEEEecCCCC------------------------------------CCCeEEEecCCCCCCCCce
Q 044265 88 TDTWCSSGQILADG-TVLQTGGDLD------------------------------------GYKKIRKFSPCEANGLCDW 130 (517)
Q Consensus 88 ~~~~c~~~~~l~dG-~l~v~GG~~~------------------------------------g~~~v~~ydp~~~~~t~~W 130 (517)
+.....+.++..++ +|+++||.+. -.+.+..|||+ ++.|
T Consensus 133 P~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~----~n~W 208 (381)
T COG3055 133 PTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPS----TNQW 208 (381)
T ss_pred ccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccc----cchh
Confidence 23333334444555 9999999530 02467889999 8999
Q ss_pred EeccCcccc-CcCccceeEEcCCCcEEEEcCCCC---CceEEe-----CCCCCceeccchhhccccccCCCCceEEEccC
Q 044265 131 VELDDVELV-NGRWYGTDQILPDGSVIILGGKGA---NTVEYY-----PPRNGAVSFPFLADVEDKQMDNLYPYVHLLPN 201 (517)
Q Consensus 131 ~~~~~~~m~-~~R~~~s~~~L~dG~v~vvGG~~~---~~~E~y-----P~~~~w~~~~~l~~t~~~~~~~~yp~~~~~~~ 201 (517)
..+ ...+ .+++. ++++..++++.+|-|.-. ++.|.+ -...+|..++.++..........--+..=-.+
T Consensus 209 ~~~--G~~pf~~~aG-sa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~ 285 (381)
T COG3055 209 RNL--GENPFYGNAG-SAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSN 285 (381)
T ss_pred hhc--CcCcccCccC-cceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCCCCCCccccceeccceeC
Confidence 987 4444 45665 445566888999988532 233433 12346765544332211100000000111236
Q ss_pred CcEEEEECC------------------------ceEEEeCCCCeEEEecCCCCCCCCCCCCCCceeeeecccCccccEEE
Q 044265 202 GHLFIFAND------------------------KAVMYDYETNKIAREYPPLDGGPRNYPSAGSSAMLALEGDFATAVIV 257 (517)
Q Consensus 202 G~iyv~Gg~------------------------~~~~ydp~t~~w~~~~p~~p~~~r~~~~~g~~v~l~~~~~~~~gkI~ 257 (517)
+.+.+.||. +-++|-...+.|. ..-.||. ...| |+++. ++++||
T Consensus 286 ~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d~g~Wk-~~GeLp~-~l~Y---G~s~~-------~nn~vl 353 (381)
T COG3055 286 GEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFDNGSWK-IVGELPQ-GLAY---GVSLS-------YNNKVL 353 (381)
T ss_pred CeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEcCCcee-eecccCC-Cccc---eEEEe-------cCCcEE
Confidence 777777761 2344444489997 5778886 4556 45543 389999
Q ss_pred EEcCCcCC
Q 044265 258 VCGGAQFG 265 (517)
Q Consensus 258 v~GG~~~~ 265 (517)
++||...+
T Consensus 354 ~IGGE~~~ 361 (381)
T COG3055 354 LIGGETSG 361 (381)
T ss_pred EEccccCC
Confidence 99998744
No 33
>PF13964 Kelch_6: Kelch motif
Probab=98.80 E-value=8.3e-09 Score=74.76 Aligned_cols=50 Identities=20% Similarity=0.260 Sum_probs=41.3
Q ss_pred ceeeeeeEEecCCcEEEEcCccCCCCCcccCCCCccccEEEeCCCCCCceeccCCCCCccc
Q 044265 300 GRIMGDMVMLPTGDVLIINGAQAGTQGFEMASNPCLFPVLYRPTQPAGLRFMTLNPGTIPR 360 (517)
Q Consensus 300 ~R~~~~~v~lpdG~v~v~GG~~~g~~g~~~~~~~~~~~e~YdP~t~~g~~W~~~~~~~~~R 360 (517)
+|..+++++ .+++|||+||.... ......+++|||+++ +|+.+++|+.||
T Consensus 1 pR~~~s~v~-~~~~iyv~GG~~~~-------~~~~~~v~~yd~~t~---~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVV-VGGKIYVFGGYDNS-------GKYSNDVERYDPETN---TWEQLPPMPTPR 50 (50)
T ss_pred CCccCEEEE-ECCEEEEECCCCCC-------CCccccEEEEcCCCC---cEEECCCCCCCC
Confidence 588888665 59999999998631 134557899999999 999999999998
No 34
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.41 E-value=1.9e-07 Score=66.48 Aligned_cols=47 Identities=19% Similarity=0.273 Sum_probs=37.4
Q ss_pred ceeeeeeEEecCCcEEEEcCccCCCCCcccCCCCccccEEEeCCCCCCceeccCCCCC
Q 044265 300 GRIMGDMVMLPTGDVLIINGAQAGTQGFEMASNPCLFPVLYRPTQPAGLRFMTLNPGT 357 (517)
Q Consensus 300 ~R~~~~~v~lpdG~v~v~GG~~~g~~g~~~~~~~~~~~e~YdP~t~~g~~W~~~~~~~ 357 (517)
+|..+++++ .+++|||+||... ......++|+|||+++ +|+.+++|+
T Consensus 1 pR~~~~~~~-~~~~iyv~GG~~~-------~~~~~~~v~~yd~~~~---~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVV-VGNKIYVIGGYDG-------NNQPTNSVEVYDPETN---TWEELPPMP 47 (47)
T ss_dssp -BBSEEEEE-ETTEEEEEEEBES-------TSSBEEEEEEEETTTT---EEEEEEEES
T ss_pred CCccCEEEE-ECCEEEEEeeecc-------cCceeeeEEEEeCCCC---EEEEcCCCC
Confidence 588888655 5999999999873 1235668999999999 999998875
No 35
>PF13964 Kelch_6: Kelch motif
Probab=98.33 E-value=9.1e-07 Score=63.98 Aligned_cols=46 Identities=15% Similarity=0.343 Sum_probs=40.0
Q ss_pred cccceeecCCCcEEEecCCCC---CCCeEEEecCCCCCCCCceEeccCccccCcC
Q 044265 91 WCSSGQILADGTVLQTGGDLD---GYKKIRKFSPCEANGLCDWVELDDVELVNGR 142 (517)
Q Consensus 91 ~c~~~~~l~dG~l~v~GG~~~---g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R 142 (517)
++.++++..+++|||+||..+ ..+.+++||+. +++|+++ .+|+.+|
T Consensus 2 R~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~----t~~W~~~--~~mp~pR 50 (50)
T PF13964_consen 2 RYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPE----TNTWEQL--PPMPTPR 50 (50)
T ss_pred CccCEEEEECCEEEEECCCCCCCCccccEEEEcCC----CCcEEEC--CCCCCCC
Confidence 566777889999999999865 26899999999 8999999 7899887
No 36
>smart00612 Kelch Kelch domain.
Probab=98.29 E-value=1e-06 Score=62.33 Aligned_cols=45 Identities=20% Similarity=0.358 Sum_probs=36.8
Q ss_pred cEEEEcCccCCCCCcccCCCCccccEEEeCCCCCCceeccCCCCCccccccceeee
Q 044265 313 DVLIINGAQAGTQGFEMASNPCLFPVLYRPTQPAGLRFMTLNPGTIPRMYHSTANL 368 (517)
Q Consensus 313 ~v~v~GG~~~g~~g~~~~~~~~~~~e~YdP~t~~g~~W~~~~~~~~~R~yhs~a~l 368 (517)
+|||+||.. +. .....+|+|||.++ +|+.+++|+.+|.+|+++++
T Consensus 1 ~iyv~GG~~-~~-------~~~~~v~~yd~~~~---~W~~~~~~~~~r~~~~~~~~ 45 (47)
T smart00612 1 KIYVVGGFD-GG-------QRLKSVEVYDPETN---KWTPLPSMPTPRSGHGVAVI 45 (47)
T ss_pred CEEEEeCCC-CC-------ceeeeEEEECCCCC---eEccCCCCCCccccceEEEe
Confidence 589999975 21 23457899999999 99999999999999986653
No 37
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.11 E-value=2.4e-06 Score=61.44 Aligned_cols=48 Identities=10% Similarity=0.135 Sum_probs=29.6
Q ss_pred ceeeeeeEEecCCcEEEEcCccCCCCCcccCCCCccccEEEeCCCCCCceeccCCCCC
Q 044265 300 GRIMGDMVMLPTGDVLIINGAQAGTQGFEMASNPCLFPVLYRPTQPAGLRFMTLNPGT 357 (517)
Q Consensus 300 ~R~~~~~v~lpdG~v~v~GG~~~g~~g~~~~~~~~~~~e~YdP~t~~g~~W~~~~~~~ 357 (517)
+|..|+++.+.+++|||+||.+.. ...+..+++||++++ +|+++++||
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~-------~~~~~d~~~~d~~~~---~W~~~~~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSS-------GSPLNDLWIFDIETN---TWTRLPSMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE--------TEE---EEEEETTTT---EEEE--SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCCC-------CcccCCEEEEECCCC---EEEECCCCC
Confidence 689999888878999999998731 123456899999999 999997775
No 38
>smart00612 Kelch Kelch domain.
Probab=98.05 E-value=7.1e-06 Score=57.85 Aligned_cols=45 Identities=18% Similarity=0.303 Sum_probs=38.5
Q ss_pred cEEEecCCCC--CCCeEEEecCCCCCCCCceEeccCccccCcCccceeEEcCCC
Q 044265 102 TVLQTGGDLD--GYKKIRKFSPCEANGLCDWVELDDVELVNGRWYGTDQILPDG 153 (517)
Q Consensus 102 ~l~v~GG~~~--g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~~s~~~L~dG 153 (517)
+||++||... ..+++++|||. +++|.+. ++|+.+|.+++++++ +|
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~----~~~W~~~--~~~~~~r~~~~~~~~-~g 47 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPE----TNKWTPL--PSMPTPRSGHGVAVI-NG 47 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCC----CCeEccC--CCCCCccccceEEEe-CC
Confidence 5899999863 35789999999 8999998 789999999999887 54
No 39
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.00 E-value=1.2e-05 Score=57.72 Aligned_cols=49 Identities=12% Similarity=0.192 Sum_probs=35.6
Q ss_pred ceeeeeeEEecCCcEEEEcCccCCCCCcccCCCCccccEEEeCCCCCCceeccCCCCC
Q 044265 300 GRIMGDMVMLPTGDVLIINGAQAGTQGFEMASNPCLFPVLYRPTQPAGLRFMTLNPGT 357 (517)
Q Consensus 300 ~R~~~~~v~lpdG~v~v~GG~~~g~~g~~~~~~~~~~~e~YdP~t~~g~~W~~~~~~~ 357 (517)
+|..|.++ ++|+||||+||...+. .......+++||++++ +|+.+++|+
T Consensus 1 ~r~~hs~~-~~~~kiyv~GG~~~~~-----~~~~~~~v~~~d~~t~---~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAV-VLDGKIYVFGGYGTDN-----GGSSSNDVWVFDTETN---QWTELSPMG 49 (49)
T ss_pred CccceEEE-EECCEEEEECCcccCC-----CCcccceeEEEECCCC---EEeecCCCC
Confidence 57778755 5699999999991111 1122346899999999 999988763
No 40
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=97.99 E-value=1e-05 Score=58.15 Aligned_cols=48 Identities=8% Similarity=0.084 Sum_probs=38.5
Q ss_pred CCcEEEEcCccCCCCCcccCCCCccccEEEeCCCCCCceeccCCCCCccccccceee
Q 044265 311 TGDVLIINGAQAGTQGFEMASNPCLFPVLYRPTQPAGLRFMTLNPGTIPRMYHSTAN 367 (517)
Q Consensus 311 dG~v~v~GG~~~g~~g~~~~~~~~~~~e~YdP~t~~g~~W~~~~~~~~~R~yhs~a~ 367 (517)
+++|||+||..... .....++.+||++++ +|+++++++.+|..|++++
T Consensus 1 g~~~~vfGG~~~~~------~~~~nd~~~~~~~~~---~W~~~~~~P~~R~~h~~~~ 48 (49)
T PF13415_consen 1 GNKLYVFGGYDDDG------GTRLNDVWVFDLDTN---TWTRIGDLPPPRSGHTATV 48 (49)
T ss_pred CCEEEEECCcCCCC------CCEecCEEEEECCCC---EEEECCCCCCCccceEEEE
Confidence 57899999987211 123456899999999 9999999999999998653
No 41
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=97.75 E-value=1.9e-05 Score=56.02 Aligned_cols=43 Identities=14% Similarity=0.288 Sum_probs=36.1
Q ss_pred cccceeecCCCcEEEecCCCC---CCCeEEEecCCCCCCCCceEeccCcccc
Q 044265 91 WCSSGQILADGTVLQTGGDLD---GYKKIRKFSPCEANGLCDWVELDDVELV 139 (517)
Q Consensus 91 ~c~~~~~l~dG~l~v~GG~~~---g~~~v~~ydp~~~~~t~~W~~~~~~~m~ 139 (517)
++..+++..+++|||+||... ..+++++||+. +++|.++ ++|+
T Consensus 2 R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~----~~~W~~~--~~mp 47 (47)
T PF01344_consen 2 RSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPE----TNTWEEL--PPMP 47 (47)
T ss_dssp BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETT----TTEEEEE--EEES
T ss_pred CccCEEEEECCEEEEEeeecccCceeeeEEEEeCC----CCEEEEc--CCCC
Confidence 566677888999999999864 35799999999 8999998 6774
No 42
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=97.65 E-value=0.0001 Score=52.92 Aligned_cols=44 Identities=18% Similarity=0.203 Sum_probs=38.1
Q ss_pred CCcEEEecCCCC----CCCeEEEecCCCCCCCCceEeccCccccCcCccceeEE
Q 044265 100 DGTVLQTGGDLD----GYKKIRKFSPCEANGLCDWVELDDVELVNGRWYGTDQI 149 (517)
Q Consensus 100 dG~l~v~GG~~~----g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~~s~~~ 149 (517)
+++|||+||... ..+.+.+||+. +.+|+++ .+++.+|..|++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~----~~~W~~~--~~~P~~R~~h~~~~ 48 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLD----TNTWTRI--GDLPPPRSGHTATV 48 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECC----CCEEEEC--CCCCCCccceEEEE
Confidence 578999999872 25789999998 8999999 78999999999876
No 43
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=97.59 E-value=0.00017 Score=51.69 Aligned_cols=47 Identities=19% Similarity=0.161 Sum_probs=34.9
Q ss_pred ceeEEEEeeCCEEEEEeccCCCCCCcccCCCcccccccccccccCCcceEEEEECCCCCeEEcccc
Q 044265 22 SSMHTAVTRFNTVVLLDRTNIGPSRKMLGRGRCRLDRNDRALKRDCYAHSAILDLQTNQIRPLMIL 87 (517)
Q Consensus 22 ~~~h~~ll~~gkv~~~gg~~~g~~~~~~~~G~~~~~~~~~~~~~d~~~~~~~yDp~t~~w~~l~~~ 87 (517)
+.-|+++.+++|||++||...+. +.+ ....+.+||+++++|+.++.+
T Consensus 2 r~~hs~~~~~~kiyv~GG~~~~~-------~~~------------~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 2 RYGHSAVVLDGKIYVFGGYGTDN-------GGS------------SSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred ccceEEEEECCEEEEECCcccCC-------CCc------------ccceeEEEECCCCEEeecCCC
Confidence 45699999999999999982110 111 234688999999999998754
No 44
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=97.54 E-value=0.028 Score=54.81 Aligned_cols=251 Identities=16% Similarity=0.218 Sum_probs=134.8
Q ss_pred EEEEECCCCCeEEccccCCCcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccCcCccceeEEc
Q 044265 71 SAILDLQTNQIRPLMILTDTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVNGRWYGTDQIL 150 (517)
Q Consensus 71 ~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~~s~~~L 150 (517)
.-+||.-|..=...-+++..|--..+..|.|..+..||.+ +.+.+|+..+.+... =... ...+...+.|-+.|..
T Consensus 79 lIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLd---N~Csiy~ls~~d~~g-~~~v-~r~l~gHtgylScC~f 153 (343)
T KOG0286|consen 79 LIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLD---NKCSIYPLSTRDAEG-NVRV-SRELAGHTGYLSCCRF 153 (343)
T ss_pred EEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcC---ceeEEEecccccccc-ccee-eeeecCccceeEEEEE
Confidence 5578765433222223445554455678999999999986 678889887321111 1111 1245666788887764
Q ss_pred C-CCcEEEEcCCCCCceEEe-CCCCCceeccchhhccccccCCCCceEEEcc-CCcEEEEEC--CceEEEeCCCCeEEEe
Q 044265 151 P-DGSVIILGGKGANTVEYY-PPRNGAVSFPFLADVEDKQMDNLYPYVHLLP-NGHLFIFAN--DKAVMYDYETNKIARE 225 (517)
Q Consensus 151 ~-dG~v~vvGG~~~~~~E~y-P~~~~w~~~~~l~~t~~~~~~~~yp~~~~~~-~G~iyv~Gg--~~~~~ydp~t~~w~~~ 225 (517)
. |+.|+.-.| ..+.-+| -.+.+-. ..+.-.+.| --...+.| +++.|+.|+ ..+.+||.+...-.+.
T Consensus 154 ~dD~~ilT~SG--D~TCalWDie~g~~~-~~f~GH~gD------V~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qt 224 (343)
T KOG0286|consen 154 LDDNHILTGSG--DMTCALWDIETGQQT-QVFHGHTGD------VMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQT 224 (343)
T ss_pred cCCCceEecCC--CceEEEEEcccceEE-EEecCCccc------EEEEecCCCCCCeEEecccccceeeeeccCcceeEe
Confidence 4 555544434 3455566 2222111 111111111 11244556 899999998 4688999988766544
Q ss_pred cCCCCCCCCCCCCCCceeeeecccCccccEEEEEcCCcCCcccccCCCCCCCCceeEEEecCCC--CCceecCCCcceee
Q 044265 226 YPPLDGGPRNYPSAGSSAMLALEGDFATAVIVVCGGAQFGAFIQRSTDTPAHGSCGRIIATSAD--PTWEMEDMPFGRIM 303 (517)
Q Consensus 226 ~p~~p~~~r~~~~~g~~v~l~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~a~~s~~~id~~~~~--~~W~~~~m~~~R~~ 303 (517)
+ ++..-.- .+...+| +|.-++.|-.+ .+|..||+.... ..++.++...+-..
T Consensus 225 F---~ghesDI---Nsv~ffP------~G~afatGSDD--------------~tcRlyDlRaD~~~a~ys~~~~~~gitS 278 (343)
T KOG0286|consen 225 F---EGHESDI---NSVRFFP------SGDAFATGSDD--------------ATCRLYDLRADQELAVYSHDSIICGITS 278 (343)
T ss_pred e---ccccccc---ceEEEcc------CCCeeeecCCC--------------ceeEEEeecCCcEEeeeccCcccCCcee
Confidence 3 3221110 1333454 66666666443 235567776421 12222222233222
Q ss_pred eeeEEecCCcEEEEcCccCCCCCcccCCCCccccEEEeCCCCCCceeccCCCCCccccccceeeecCCCcEEEecCCC
Q 044265 304 GDMVMLPTGDVLIINGAQAGTQGFEMASNPCLFPVLYRPTQPAGLRFMTLNPGTIPRMYHSTANLLPDGRVLIAGSNP 381 (517)
Q Consensus 304 ~~~v~lpdG~v~v~GG~~~g~~g~~~~~~~~~~~e~YdP~t~~g~~W~~~~~~~~~R~yhs~a~ll~dG~V~v~GG~~ 381 (517)
.. .-.-|+++..|..+ +.+++||.-+. ++-..+ .-+.-|. |+.-+.|||.-+..|+-+
T Consensus 279 v~--FS~SGRlLfagy~d-------------~~c~vWDtlk~--e~vg~L-~GHeNRv--Scl~~s~DG~av~TgSWD 336 (343)
T KOG0286|consen 279 VA--FSKSGRLLFAGYDD-------------FTCNVWDTLKG--ERVGVL-AGHENRV--SCLGVSPDGMAVATGSWD 336 (343)
T ss_pred EE--EcccccEEEeeecC-------------CceeEeecccc--ceEEEe-eccCCee--EEEEECCCCcEEEecchh
Confidence 21 12379999887443 24688887765 122222 2233343 445567999999999854
No 45
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=97.36 E-value=0.00037 Score=49.85 Aligned_cols=37 Identities=19% Similarity=0.412 Sum_probs=23.0
Q ss_pred CceEEEccCCcEEEEEC--------CceEEEeCCCCeEEEecCCCC
Q 044265 193 YPYVHLLPNGHLFIFAN--------DKAVMYDYETNKIAREYPPLD 230 (517)
Q Consensus 193 yp~~~~~~~G~iyv~Gg--------~~~~~ydp~t~~w~~~~p~~p 230 (517)
++.+..+.+++||++|| +++++||+++++|++ +++||
T Consensus 4 ~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~-~~~~P 48 (49)
T PF13418_consen 4 GHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTR-LPSMP 48 (49)
T ss_dssp S-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE---SS-
T ss_pred eEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEE-CCCCC
Confidence 44444455799999998 368999999999984 78776
No 46
>PLN02772 guanylate kinase
Probab=97.29 E-value=0.00055 Score=70.47 Aligned_cols=71 Identities=17% Similarity=0.197 Sum_probs=54.5
Q ss_pred cceeeeeeEEecCCcEEEEcCccCCCCCcccCCCCccccEEEeCCCCCCceecc---CCCCCccccccceeeecCCCcEE
Q 044265 299 FGRIMGDMVMLPTGDVLIINGAQAGTQGFEMASNPCLFPVLYRPTQPAGLRFMT---LNPGTIPRMYHSTANLLPDGRVL 375 (517)
Q Consensus 299 ~~R~~~~~v~lpdG~v~v~GG~~~g~~g~~~~~~~~~~~e~YdP~t~~g~~W~~---~~~~~~~R~yhs~a~ll~dG~V~ 375 (517)
.+|..+++++ .++++||+||.+... .....+.+||+.+. +|+. ....|.+|-.|| |+++-|.|||
T Consensus 23 ~~~~~~tav~-igdk~yv~GG~~d~~-------~~~~~v~i~D~~t~---~W~~P~V~G~~P~~r~GhS-a~v~~~~ril 90 (398)
T PLN02772 23 KPKNRETSVT-IGDKTYVIGGNHEGN-------TLSIGVQILDKITN---NWVSPIVLGTGPKPCKGYS-AVVLNKDRIL 90 (398)
T ss_pred CCCCcceeEE-ECCEEEEEcccCCCc-------cccceEEEEECCCC---cEecccccCCCCCCCCcce-EEEECCceEE
Confidence 3677788665 599999999976321 12346899999999 9975 357789999998 5567899999
Q ss_pred EecCCC
Q 044265 376 IAGSNP 381 (517)
Q Consensus 376 v~GG~~ 381 (517)
|.++..
T Consensus 91 v~~~~~ 96 (398)
T PLN02772 91 VIKKGS 96 (398)
T ss_pred EEeCCC
Confidence 999653
No 47
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=97.27 E-value=0.28 Score=49.90 Aligned_cols=139 Identities=7% Similarity=-0.013 Sum_probs=68.9
Q ss_pred EEEEECC-CCCeEEccccC--CCcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccCcCcccee
Q 044265 71 SAILDLQ-TNQIRPLMILT--DTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVNGRWYGTD 147 (517)
Q Consensus 71 ~~~yDp~-t~~w~~l~~~~--~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~~s~ 147 (517)
+..|+.. +++++.+.... ...| ..++.+||+.+.+..+. ...+.+||...+ ....... ..+.....-+++
T Consensus 59 i~~~~~~~~g~l~~~~~~~~~~~p~-~i~~~~~g~~l~v~~~~--~~~v~v~~~~~~--g~~~~~~--~~~~~~~~~~~~ 131 (330)
T PRK11028 59 VLSYRIADDGALTFAAESPLPGSPT-HISTDHQGRFLFSASYN--ANCVSVSPLDKD--GIPVAPI--QIIEGLEGCHSA 131 (330)
T ss_pred EEEEEECCCCceEEeeeecCCCCce-EEEECCCCCEEEEEEcC--CCeEEEEEECCC--CCCCCce--eeccCCCcccEe
Confidence 4456654 45665444221 1222 34566789866666543 367888887521 1111111 112222334566
Q ss_pred EEcCCCcEEEEcCCCCCceEEe-CCCCCceeccchhhccccccCCCCc-eEEEccCCcEEEEE---CCceEEEeCC
Q 044265 148 QILPDGSVIILGGKGANTVEYY-PPRNGAVSFPFLADVEDKQMDNLYP-YVHLLPNGHLFIFA---NDKAVMYDYE 218 (517)
Q Consensus 148 ~~L~dG~v~vvGG~~~~~~E~y-P~~~~w~~~~~l~~t~~~~~~~~yp-~~~~~~~G~iyv~G---g~~~~~ydp~ 218 (517)
+.-+||+.+.+.......+.+| ..+.+... +....... .+....| ++.+.+||+.+.+. .+.+.+||..
T Consensus 132 ~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~-~~~~~~~~-~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~ 205 (330)
T PRK11028 132 NIDPDNRTLWVPCLKEDRIRLFTLSDDGHLV-AQEPAEVT-TVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLK 205 (330)
T ss_pred EeCCCCCEEEEeeCCCCEEEEEEECCCCccc-ccCCCcee-cCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEe
Confidence 6778888777776666778888 43322110 00000000 0001122 35566888755444 3567778775
No 48
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.26 E-value=0.1 Score=54.74 Aligned_cols=240 Identities=13% Similarity=0.176 Sum_probs=118.7
Q ss_pred eEEEEECCCCC--eEEccccCCCcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCcccc--CcCccc
Q 044265 70 HSAILDLQTNQ--IRPLMILTDTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELV--NGRWYG 145 (517)
Q Consensus 70 ~~~~yDp~t~~--w~~l~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~--~~R~~~ 145 (517)
....+|.+|++ |+.-.. .... +..++.++++|+..+. ..+..||+.++ +..|... ...+ ..|...
T Consensus 131 ~l~ald~~tG~~~W~~~~~-~~~~--ssP~v~~~~v~v~~~~----g~l~ald~~tG--~~~W~~~--~~~~~~~~~~~~ 199 (394)
T PRK11138 131 QVYALNAEDGEVAWQTKVA-GEAL--SRPVVSDGLVLVHTSN----GMLQALNESDG--AVKWTVN--LDVPSLTLRGES 199 (394)
T ss_pred EEEEEECCCCCCcccccCC-Ccee--cCCEEECCEEEEECCC----CEEEEEEccCC--CEeeeec--CCCCcccccCCC
Confidence 46788998876 764321 1122 2234567888875442 46889999854 5679764 2211 112233
Q ss_pred eeEEcCCCcEEEEcCCCCCceEEe-CCC--CCceec-cchhhccc--c-ccCCCCceEEEccCCcEEEEEC-CceEEEeC
Q 044265 146 TDQILPDGSVIILGGKGANTVEYY-PPR--NGAVSF-PFLADVED--K-QMDNLYPYVHLLPNGHLFIFAN-DKAVMYDY 217 (517)
Q Consensus 146 s~~~L~dG~v~vvGG~~~~~~E~y-P~~--~~w~~~-~~l~~t~~--~-~~~~~yp~~~~~~~G~iyv~Gg-~~~~~ydp 217 (517)
+.++. +|.+|+..+. + .+-.+ +.+ ..|... ........ . ......| ++.+|.||+.+. ....++|+
T Consensus 200 sP~v~-~~~v~~~~~~-g-~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP---~v~~~~vy~~~~~g~l~ald~ 273 (394)
T PRK11138 200 APATA-FGGAIVGGDN-G-RVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTP---VVVGGVVYALAYNGNLVALDL 273 (394)
T ss_pred CCEEE-CCEEEEEcCC-C-EEEEEEccCChhhheeccccCCCccchhcccccCCCc---EEECCEEEEEEcCCeEEEEEC
Confidence 33443 6777765442 2 22223 443 235421 00000000 0 0001112 234889998764 46788999
Q ss_pred CCCe--EEEecCCCCCCCCCCCCCCceeeeecccCccccEEEEEcCCcCCcccccCCCCCCCCceeEEEecCCCCCceec
Q 044265 218 ETNK--IAREYPPLDGGPRNYPSAGSSAMLALEGDFATAVIVVCGGAQFGAFIQRSTDTPAHGSCGRIIATSADPTWEME 295 (517)
Q Consensus 218 ~t~~--w~~~~p~~p~~~r~~~~~g~~v~l~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W~~~ 295 (517)
++++ |.+.+ .. .. ..+ + .+++||++.... .+..+|+.+....|+..
T Consensus 274 ~tG~~~W~~~~---~~----~~--~~~-~-------~~~~vy~~~~~g---------------~l~ald~~tG~~~W~~~ 321 (394)
T PRK11138 274 RSGQIVWKREY---GS----VN--DFA-V-------DGGRIYLVDQND---------------RVYALDTRGGVELWSQS 321 (394)
T ss_pred CCCCEEEeecC---CC----cc--CcE-E-------ECCEEEEEcCCC---------------eEEEEECCCCcEEEccc
Confidence 8875 65322 11 10 112 2 278888865321 24456766545568654
Q ss_pred CCCcceeeeeeEEecCCcEEEEcCccCCCCCcccCCCCccccEEEeCCCCCCceeccCCCCCccccccceeeecCCCcEE
Q 044265 296 DMPFGRIMGDMVMLPTGDVLIINGAQAGTQGFEMASNPCLFPVLYRPTQPAGLRFMTLNPGTIPRMYHSTANLLPDGRVL 375 (517)
Q Consensus 296 ~m~~~R~~~~~v~lpdG~v~v~GG~~~g~~g~~~~~~~~~~~e~YdP~t~~g~~W~~~~~~~~~R~yhs~a~ll~dG~V~ 375 (517)
.+. .+.....+ +.+|+||+... + | .+.++|+++.+ ..|+.- ......+.+ -+..|++||
T Consensus 322 ~~~-~~~~~sp~-v~~g~l~v~~~-~-G------------~l~~ld~~tG~-~~~~~~--~~~~~~~s~--P~~~~~~l~ 380 (394)
T PRK11138 322 DLL-HRLLTAPV-LYNGYLVVGDS-E-G------------YLHWINREDGR-FVAQQK--VDSSGFLSE--PVVADDKLL 380 (394)
T ss_pred ccC-CCcccCCE-EECCEEEEEeC-C-C------------EEEEEECCCCC-EEEEEE--cCCCcceeC--CEEECCEEE
Confidence 222 23333323 35899987532 1 2 24678888761 145431 111122322 223588888
Q ss_pred EecC
Q 044265 376 IAGS 379 (517)
Q Consensus 376 v~GG 379 (517)
|..-
T Consensus 381 v~t~ 384 (394)
T PRK11138 381 IQAR 384 (394)
T ss_pred EEeC
Confidence 8743
No 49
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.10 E-value=0.28 Score=46.68 Aligned_cols=134 Identities=18% Similarity=0.240 Sum_probs=70.9
Q ss_pred eEEEEECCCCCeEEccccCCCcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccC-cCccceeE
Q 044265 70 HSAILDLQTNQIRPLMILTDTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVN-GRWYGTDQ 148 (517)
Q Consensus 70 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~-~R~~~s~~ 148 (517)
...+||..+++.......+..........++++.+++++.+ ..+.+||.. +.+... .+.. ...-.+..
T Consensus 32 ~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~---~~i~i~~~~----~~~~~~----~~~~~~~~i~~~~ 100 (289)
T cd00200 32 TIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSD---KTIRLWDLE----TGECVR----TLTGHTSYVSSVA 100 (289)
T ss_pred EEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCC---CeEEEEEcC----cccceE----EEeccCCcEEEEE
Confidence 36678887765332222233333345567788888888863 578999987 322211 1111 11233455
Q ss_pred EcCCCcEEEEcCCCCCceEEe-CCCCCce-eccchhhccccccCCCCceEEEccCCcEEEEEC--CceEEEeCCCCeEE
Q 044265 149 ILPDGSVIILGGKGANTVEYY-PPRNGAV-SFPFLADVEDKQMDNLYPYVHLLPNGHLFIFAN--DKAVMYDYETNKIA 223 (517)
Q Consensus 149 ~L~dG~v~vvGG~~~~~~E~y-P~~~~w~-~~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~Gg--~~~~~ydp~t~~w~ 223 (517)
..+++++++.++.+ ..+.+| ..+.+.. .... . . ..-..+...+++++++.+. ..+.+||..+++-.
T Consensus 101 ~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~---~----~-~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~ 170 (289)
T cd00200 101 FSPDGRILSSSSRD-KTIKVWDVETGKCLTTLRG---H----T-DWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCV 170 (289)
T ss_pred EcCCCCEEEEecCC-CeEEEEECCCcEEEEEecc---C----C-CcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccc
Confidence 56667777777633 456666 4422211 1110 0 0 0011234455677777764 56889998765433
No 50
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=97.06 E-value=0.36 Score=47.36 Aligned_cols=135 Identities=16% Similarity=0.200 Sum_probs=71.0
Q ss_pred eEEEEECCCCCeEE-ccccCCCcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccCcCccceeE
Q 044265 70 HSAILDLQTNQIRP-LMILTDTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVNGRWYGTDQ 148 (517)
Q Consensus 70 ~~~~yDp~t~~w~~-l~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~~s~~ 148 (517)
.+.+||..+++... +...... ...++.++|+.+.+.+..+ ..+.+||.. +.+-. ..+.....-.+.+
T Consensus 54 ~v~~~d~~~~~~~~~~~~~~~~--~~~~~~~~g~~l~~~~~~~--~~l~~~d~~----~~~~~----~~~~~~~~~~~~~ 121 (300)
T TIGR03866 54 TIQVIDLATGEVIGTLPSGPDP--ELFALHPNGKILYIANEDD--NLVTVIDIE----TRKVL----AEIPVGVEPEGMA 121 (300)
T ss_pred eEEEEECCCCcEEEeccCCCCc--cEEEECCCCCEEEEEcCCC--CeEEEEECC----CCeEE----eEeeCCCCcceEE
Confidence 46789998887754 2222222 2344567887554443222 579999987 33221 1122122223456
Q ss_pred EcCCCcEEEEcCCCCCceEEe-CCCCCceeccchhhccccccCCCCceEEEccCCcEEEEEC---CceEEEeCCCCeEEE
Q 044265 149 ILPDGSVIILGGKGANTVEYY-PPRNGAVSFPFLADVEDKQMDNLYPYVHLLPNGHLFIFAN---DKAVMYDYETNKIAR 224 (517)
Q Consensus 149 ~L~dG~v~vvGG~~~~~~E~y-P~~~~w~~~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~Gg---~~~~~ydp~t~~w~~ 224 (517)
..+||++++++..+...+..| ..+..-... ..... . -......++|+.+++++ ..+.+||.++.+...
T Consensus 122 ~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~-~~~~~------~-~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~ 193 (300)
T TIGR03866 122 VSPDGKIVVNTSETTNMAHFIDTKTYEIVDN-VLVDQ------R-PRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIK 193 (300)
T ss_pred ECCCCCEEEEEecCCCeEEEEeCCCCeEEEE-EEcCC------C-ccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeee
Confidence 678999988876544334444 332211110 00000 0 01244567887655443 468899998876543
No 51
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=97.02 E-value=0.39 Score=47.09 Aligned_cols=133 Identities=14% Similarity=0.177 Sum_probs=70.2
Q ss_pred eEEEEECCCCCeEEccccCCCcccceeecCCCcE-EEecCCCCCCCeEEEecCCCCCCCCceEeccCccccCcCccceeE
Q 044265 70 HSAILDLQTNQIRPLMILTDTWCSSGQILADGTV-LQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVNGRWYGTDQ 148 (517)
Q Consensus 70 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l-~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~~s~~ 148 (517)
...+||+.+++....-..+.. ..+..+.+||+. |++++.. ..+.+||.. +.+.... +.....-...+
T Consensus 12 ~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~---~~v~~~d~~----~~~~~~~----~~~~~~~~~~~ 79 (300)
T TIGR03866 12 TISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDS---DTIQVIDLA----TGEVIGT----LPSGPDPELFA 79 (300)
T ss_pred EEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCC---CeEEEEECC----CCcEEEe----ccCCCCccEEE
Confidence 466788877765433222221 233556778875 4666532 679999987 4444332 11111112345
Q ss_pred EcCCCcEEEEcCCCCCceEEe-CCCCCce-eccchhhccccccCCCCceEEEccCCcEEEEECC---ceEEEeCCCCeEE
Q 044265 149 ILPDGSVIILGGKGANTVEYY-PPRNGAV-SFPFLADVEDKQMDNLYPYVHLLPNGHLFIFAND---KAVMYDYETNKIA 223 (517)
Q Consensus 149 ~L~dG~v~vvGG~~~~~~E~y-P~~~~w~-~~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~Gg~---~~~~ydp~t~~w~ 223 (517)
..++|+.+.+.+.....+.+| ..+.+-. ..+. . . .-....+.++|++++++.. ....||..+.+-.
T Consensus 80 ~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~---~-----~-~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~ 150 (300)
T TIGR03866 80 LHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV---G-----V-EPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIV 150 (300)
T ss_pred ECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC---C-----C-CcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEE
Confidence 667887555444333456667 4432211 1110 0 0 0113456689998888754 2456788776544
No 52
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.80 E-value=0.86 Score=47.68 Aligned_cols=260 Identities=12% Similarity=0.143 Sum_probs=127.5
Q ss_pred EEEeeCCEEEEEeccCCCCCCcccCCCcccccccccccccCCcceEEEEECCCCC--eEEccccC--------CCcccce
Q 044265 26 TAVTRFNTVVLLDRTNIGPSRKMLGRGRCRLDRNDRALKRDCYAHSAILDLQTNQ--IRPLMILT--------DTWCSSG 95 (517)
Q Consensus 26 ~~ll~~gkv~~~gg~~~g~~~~~~~~G~~~~~~~~~~~~~d~~~~~~~yDp~t~~--w~~l~~~~--------~~~c~~~ 95 (517)
..++.+|+||+.+.. | ....+|.+|++ |+.-.... .....+.
T Consensus 64 sPvv~~~~vy~~~~~-----------g-----------------~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~ 115 (394)
T PRK11138 64 HPAVAYNKVYAADRA-----------G-----------------LVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGG 115 (394)
T ss_pred ccEEECCEEEEECCC-----------C-----------------eEEEEECCCCcEeeEEcCCCcccccccccccccccc
Confidence 446679999997531 1 36678887766 66422111 1122334
Q ss_pred eecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccCcCccceeEEcCCCcEEEEcCCCCCceEEe-CCCC-
Q 044265 96 QILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVNGRWYGTDQILPDGSVIILGGKGANTVEYY-PPRN- 173 (517)
Q Consensus 96 ~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~~s~~~L~dG~v~vvGG~~~~~~E~y-P~~~- 173 (517)
.++.+++||+.+.. ..+..+|..++ ...|+.. +...- +.+.++ .+++||+..+. ..+..+ +.+.
T Consensus 116 ~~v~~~~v~v~~~~----g~l~ald~~tG--~~~W~~~----~~~~~-~ssP~v-~~~~v~v~~~~--g~l~ald~~tG~ 181 (394)
T PRK11138 116 VTVAGGKVYIGSEK----GQVYALNAEDG--EVAWQTK----VAGEA-LSRPVV-SDGLVLVHTSN--GMLQALNESDGA 181 (394)
T ss_pred cEEECCEEEEEcCC----CEEEEEECCCC--CCccccc----CCCce-ecCCEE-ECCEEEEECCC--CEEEEEEccCCC
Confidence 45567788775432 46889998854 6679753 22211 222333 48888875442 234444 5543
Q ss_pred -CceeccchhhccccccCCCCceEEEccCCcEEEEEC-CceEEEeCCCCe--EEEecCCCCCCCCC----CCCCCceeee
Q 044265 174 -GAVSFPFLADVEDKQMDNLYPYVHLLPNGHLFIFAN-DKAVMYDYETNK--IAREYPPLDGGPRN----YPSAGSSAML 245 (517)
Q Consensus 174 -~w~~~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~Gg-~~~~~ydp~t~~--w~~~~p~~p~~~r~----~~~~g~~v~l 245 (517)
.|.......... .....-| ++.+|.+|+..+ ..+..+|+++++ |...+.. |..... .....+-++
T Consensus 182 ~~W~~~~~~~~~~--~~~~~sP---~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~-~~~~~~~~~~~~~~~sP~v- 254 (394)
T PRK11138 182 VKWTVNLDVPSLT--LRGESAP---ATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQ-PTGATEIDRLVDVDTTPVV- 254 (394)
T ss_pred EeeeecCCCCccc--ccCCCCC---EEECCEEEEEcCCCEEEEEEccCChhhheecccc-CCCccchhcccccCCCcEE-
Confidence 354211000000 0000112 223677776544 346678888764 6532211 110000 000011122
Q ss_pred ecccCccccEEEEEcCCcCCcccccCCCCCCCCceeEEEecCCCCCceecCCCcceeeeeeEEecCCcEEEEcCccCCCC
Q 044265 246 ALEGDFATAVIVVCGGAQFGAFIQRSTDTPAHGSCGRIIATSADPTWEMEDMPFGRIMGDMVMLPTGDVLIINGAQAGTQ 325 (517)
Q Consensus 246 ~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W~~~~m~~~R~~~~~v~lpdG~v~v~GG~~~g~~ 325 (517)
.++.||+++.. + ...++|+......|+.. ....+ . .++.+|+||+.... |
T Consensus 255 ------~~~~vy~~~~~--g-------------~l~ald~~tG~~~W~~~-~~~~~---~-~~~~~~~vy~~~~~--g-- 304 (394)
T PRK11138 255 ------VGGVVYALAYN--G-------------NLVALDLRSGQIVWKRE-YGSVN---D-FAVDGGRIYLVDQN--D-- 304 (394)
T ss_pred ------ECCEEEEEEcC--C-------------eEEEEECCCCCEEEeec-CCCcc---C-cEEECCEEEEEcCC--C--
Confidence 27888876532 1 23456766545568764 11111 2 23458899987532 1
Q ss_pred CcccCCCCccccEEEeCCCCCCceeccCCCCCccccccceeeecCCCcEEEecC
Q 044265 326 GFEMASNPCLFPVLYRPTQPAGLRFMTLNPGTIPRMYHSTANLLPDGRVLIAGS 379 (517)
Q Consensus 326 g~~~~~~~~~~~e~YdP~t~~g~~W~~~~~~~~~R~yhs~a~ll~dG~V~v~GG 379 (517)
.+.++|+++. ...|+.-.. ..+...+ .++.+|+||+...
T Consensus 305 ----------~l~ald~~tG-~~~W~~~~~--~~~~~~s--p~v~~g~l~v~~~ 343 (394)
T PRK11138 305 ----------RVYALDTRGG-VELWSQSDL--LHRLLTA--PVLYNGYLVVGDS 343 (394)
T ss_pred ----------eEEEEECCCC-cEEEccccc--CCCcccC--CEEECCEEEEEeC
Confidence 2577888765 236864211 1222222 2235888887643
No 53
>PLN02772 guanylate kinase
Probab=96.73 E-value=0.0052 Score=63.42 Aligned_cols=70 Identities=10% Similarity=0.071 Sum_probs=54.6
Q ss_pred CcccceeecCCCcEEEecCCCCC---CCeEEEecCCCCCCCCceEecc-CccccCcCccceeEEcCCCcEEEEcCCCC
Q 044265 90 TWCSSGQILADGTVLQTGGDLDG---YKKIRKFSPCEANGLCDWVELD-DVELVNGRWYGTDQILPDGSVIILGGKGA 163 (517)
Q Consensus 90 ~~c~~~~~l~dG~l~v~GG~~~g---~~~v~~ydp~~~~~t~~W~~~~-~~~m~~~R~~~s~~~L~dG~v~vvGG~~~ 163 (517)
..|...++..+.++||+||.++. ...+++||+. +.+|.... ...-+.+|-.|+++++.+++|+|+++-..
T Consensus 24 ~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~----t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~ 97 (398)
T PLN02772 24 PKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKI----TNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSA 97 (398)
T ss_pred CCCcceeEEECCEEEEEcccCCCccccceEEEEECC----CCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCC
Confidence 34445566778999999998763 3589999999 89998741 13467889999999999999999986543
No 54
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=96.70 E-value=0.69 Score=45.19 Aligned_cols=220 Identities=18% Similarity=0.159 Sum_probs=125.5
Q ss_pred EEEEECCCCCeEEccccCCCcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccCcCc---ccee
Q 044265 71 SAILDLQTNQIRPLMILTDTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVNGRW---YGTD 147 (517)
Q Consensus 71 ~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~---~~s~ 147 (517)
.-..||.|++....+...-..-++.++-+||...|+=+ ...|..+||+ +...++. +|+..+. .-++
T Consensus 85 iGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~----~~aI~R~dpk----t~evt~f---~lp~~~a~~nlet~ 153 (353)
T COG4257 85 IGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDT----GLAIGRLDPK----TLEVTRF---PLPLEHADANLETA 153 (353)
T ss_pred ceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecC----cceeEEecCc----ccceEEe---ecccccCCCcccce
Confidence 44679999999887765544444556667888888733 2479999998 5555554 2333332 2345
Q ss_pred EEcCCCcEEEEcCCCC--------CceEEeCCCCCceeccchhhccccccCCCCceEEEccCCcEEEE--ECCceEEEeC
Q 044265 148 QILPDGSVIILGGKGA--------NTVEYYPPRNGAVSFPFLADVEDKQMDNLYPYVHLLPNGHLFIF--ANDKAVMYDY 217 (517)
Q Consensus 148 ~~L~dG~v~vvGG~~~--------~~~E~yP~~~~w~~~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~--Gg~~~~~ydp 217 (517)
+.-++|.++..|-... ..+++||.. +.. .-| .+++.+||.+|+. .|+...+.||
T Consensus 154 vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP---------qG~------gpy-Gi~atpdGsvwyaslagnaiaridp 217 (353)
T COG4257 154 VFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP---------QGG------GPY-GICATPDGSVWYASLAGNAIARIDP 217 (353)
T ss_pred eeCCCccEEEeeccccceecCcccCceeeeccC---------CCC------CCc-ceEECCCCcEEEEeccccceEEccc
Confidence 5556788888874321 134444221 000 012 3677899999998 6777888999
Q ss_pred CCCeEEEecCCCCCCCCCCCCCCceeeeecccCccccEEEEEcCCcCCcccccCCCCCCCCceeEEEecCCCCCceecCC
Q 044265 218 ETNKIAREYPPLDGGPRNYPSAGSSAMLALEGDFATAVIVVCGGAQFGAFIQRSTDTPAHGSCGRIIATSADPTWEMEDM 297 (517)
Q Consensus 218 ~t~~w~~~~p~~p~~~r~~~~~g~~v~l~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W~~~~m 297 (517)
.+..-+ .+|. |.......+ ...+ -| -+++.+. + ....+..++||. ...|.+-+|
T Consensus 218 ~~~~ae-v~p~-P~~~~~gsR-riws-dp------ig~~wit---t-----------wg~g~l~rfdPs--~~sW~eypL 271 (353)
T COG4257 218 FAGHAE-VVPQ-PNALKAGSR-RIWS-DP------IGRAWIT---T-----------WGTGSLHRFDPS--VTSWIEYPL 271 (353)
T ss_pred ccCCcc-eecC-CCccccccc-cccc-Cc------cCcEEEe---c-----------cCCceeeEeCcc--cccceeeeC
Confidence 887543 3432 321011000 0111 11 4666665 1 012346788887 456987656
Q ss_pred C--cceeeeeeEEecCCcEEEEcCccCCCCCcccCCCCccccEEEeCCCCCCceeccCCCCCcccccc
Q 044265 298 P--FGRIMGDMVMLPTGDVLIINGAQAGTQGFEMASNPCLFPVLYRPTQPAGLRFMTLNPGTIPRMYH 363 (517)
Q Consensus 298 ~--~~R~~~~~v~lpdG~v~v~GG~~~g~~g~~~~~~~~~~~e~YdP~t~~g~~W~~~~~~~~~R~yh 363 (517)
| .+|-+..- +=-.|+|+..- .. . ..+..|||++- +++.+ +++|-..
T Consensus 272 Pgs~arpys~r-VD~~grVW~se-a~---------a---gai~rfdpeta---~ftv~---p~pr~n~ 319 (353)
T COG4257 272 PGSKARPYSMR-VDRHGRVWLSE-AD---------A---GAIGRFDPETA---RFTVL---PIPRPNS 319 (353)
T ss_pred CCCCCCcceee-eccCCcEEeec-cc---------c---CceeecCcccc---eEEEe---cCCCCCC
Confidence 5 45655432 22346777641 11 1 13688999999 99764 4555443
No 55
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=96.58 E-value=0.24 Score=47.52 Aligned_cols=223 Identities=14% Similarity=0.175 Sum_probs=115.1
Q ss_pred cceEEEEECCCCCeEEccc--cCCCcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccCcCccc
Q 044265 68 YAHSAILDLQTNQIRPLMI--LTDTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVNGRWYG 145 (517)
Q Consensus 68 ~~~~~~yDp~t~~w~~l~~--~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~~ 145 (517)
..++.+||..++.=.++.. .+..--.+..+-.||+++.+||.+ ..+++||.. .-.-.+ .....---.
T Consensus 60 ~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseD---gt~kIWdlR----~~~~qR----~~~~~spVn 128 (311)
T KOG0315|consen 60 NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSED---GTVKIWDLR----SLSCQR----NYQHNSPVN 128 (311)
T ss_pred CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCC---ceEEEEecc----Ccccch----hccCCCCcc
Confidence 4579999999877655543 232223344566799999999975 478889876 211111 112221123
Q ss_pred eeEEcCCCcEEEEcCCCCCceEEe-CCCCCceeccchhhccccccCCCCceEEEccCCcEEEEECCceEEE--eCCCCeE
Q 044265 146 TDQILPDGSVIILGGKGANTVEYY-PPRNGAVSFPFLADVEDKQMDNLYPYVHLLPNGHLFIFANDKAVMY--DYETNKI 222 (517)
Q Consensus 146 s~~~L~dG~v~vvGG~~~~~~E~y-P~~~~w~~~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~Gg~~~~~y--dp~t~~w 222 (517)
+++.-++.--+++|- ....+.+| -..+......+ ++. .-.-..+.+.+||+..+.+++...+| +.-+.+-
T Consensus 129 ~vvlhpnQteLis~d-qsg~irvWDl~~~~c~~~li-Pe~-----~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~ 201 (311)
T KOG0315|consen 129 TVVLHPNQTELISGD-QSGNIRVWDLGENSCTHELI-PED-----DTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQT 201 (311)
T ss_pred eEEecCCcceEEeec-CCCcEEEEEccCCccccccC-CCC-----CcceeeEEEcCCCcEEEEecCCccEEEEEccCCCc
Confidence 444444544445443 33456677 44443321111 110 00112467788999999988755444 4444322
Q ss_pred EEecCCCCCC-CCCCCCCCceeeeecccCccccEEEEEcCCcCCcccccCCCCCCCCceeEEEecCCCCCceec-CCC-c
Q 044265 223 AREYPPLDGG-PRNYPSAGSSAMLALEGDFATAVIVVCGGAQFGAFIQRSTDTPAHGSCGRIIATSADPTWEME-DMP-F 299 (517)
Q Consensus 223 ~~~~p~~p~~-~r~~~~~g~~v~l~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W~~~-~m~-~ 299 (517)
...+-|+..- .++.. +...+|.+ ++|.++..+.++ +|.++... +-...+ .+. .
T Consensus 202 ~s~l~P~~k~~ah~~~--il~C~lSP-----d~k~lat~ssdk--------------tv~iwn~~---~~~kle~~l~gh 257 (311)
T KOG0315|consen 202 ASELEPVHKFQAHNGH--ILRCLLSP-----DVKYLATCSSDK--------------TVKIWNTD---DFFKLELVLTGH 257 (311)
T ss_pred cccceEhhheecccce--EEEEEECC-----CCcEEEeecCCc--------------eEEEEecC---CceeeEEEeecC
Confidence 1112111100 11110 22233432 788888777653 22223222 111222 221 2
Q ss_pred ceeeeeeEEecCCcEEEEcCccCCCCCcccCCCCccccEEEeCCCC
Q 044265 300 GRIMGDMVMLPTGDVLIINGAQAGTQGFEMASNPCLFPVLYRPTQP 345 (517)
Q Consensus 300 ~R~~~~~v~lpdG~v~v~GG~~~g~~g~~~~~~~~~~~e~YdP~t~ 345 (517)
.|..-+++.-.||+-+|.|+.+ . .+.+||+.++
T Consensus 258 ~rWvWdc~FS~dg~YlvTassd-~------------~~rlW~~~~~ 290 (311)
T KOG0315|consen 258 QRWVWDCAFSADGEYLVTASSD-H------------TARLWDLSAG 290 (311)
T ss_pred CceEEeeeeccCccEEEecCCC-C------------ceeecccccC
Confidence 3665666677799999998865 2 3578888877
No 56
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.48 E-value=0.91 Score=47.05 Aligned_cols=244 Identities=12% Similarity=0.150 Sum_probs=113.2
Q ss_pred eEEEEECCCCC--eEEccccCCCcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCcccc--CcCccc
Q 044265 70 HSAILDLQTNQ--IRPLMILTDTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELV--NGRWYG 145 (517)
Q Consensus 70 ~~~~yDp~t~~--w~~l~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~--~~R~~~ 145 (517)
....+|+.+++ |+.... .... +...+.++++|+..+. ..+..+|+.++ ...|... ..-+ ..+...
T Consensus 116 ~l~ald~~tG~~~W~~~~~-~~~~--~~p~v~~~~v~v~~~~----g~l~a~d~~tG--~~~W~~~--~~~~~~~~~~~~ 184 (377)
T TIGR03300 116 EVIALDAEDGKELWRAKLS-SEVL--SPPLVANGLVVVRTND----GRLTALDAATG--ERLWTYS--RVTPALTLRGSA 184 (377)
T ss_pred EEEEEECCCCcEeeeeccC-ceee--cCCEEECCEEEEECCC----CeEEEEEcCCC--ceeeEEc--cCCCceeecCCC
Confidence 57788988876 654321 1111 2223456777765432 46889998743 5568753 1111 113333
Q ss_pred eeEEcCCCcEEEEcCCCCCceEEe-CCCC--Cceec-cchhhccccccCCCCceEEEccCCcEEEEEC-CceEEEeCCCC
Q 044265 146 TDQILPDGSVIILGGKGANTVEYY-PPRN--GAVSF-PFLADVEDKQMDNLYPYVHLLPNGHLFIFAN-DKAVMYDYETN 220 (517)
Q Consensus 146 s~~~L~dG~v~vvGG~~~~~~E~y-P~~~--~w~~~-~~l~~t~~~~~~~~yp~~~~~~~G~iyv~Gg-~~~~~ydp~t~ 220 (517)
+.++. ++.+| +|..+. .+-.+ +.+. .|... ..................-++.+++||+... ....+||++++
T Consensus 185 sp~~~-~~~v~-~~~~~g-~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG 261 (377)
T TIGR03300 185 SPVIA-DGGVL-VGFAGG-KLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSG 261 (377)
T ss_pred CCEEE-CCEEE-EECCCC-EEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCC
Confidence 44444 66554 443322 23333 4432 35321 1000000000000000112234788888763 46789999876
Q ss_pred e--EEEecCCCCCCCCCCCCCCceeeeecccCccccEEEEEcCCcCCcccccCCCCCCCCceeEEEecCCCCCceecCCC
Q 044265 221 K--IAREYPPLDGGPRNYPSAGSSAMLALEGDFATAVIVVCGGAQFGAFIQRSTDTPAHGSCGRIIATSADPTWEMEDMP 298 (517)
Q Consensus 221 ~--w~~~~p~~p~~~r~~~~~g~~v~l~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W~~~~m~ 298 (517)
+ |... .. .+ ..-++ .+++||+.... ..+.++|..+....|+...+.
T Consensus 262 ~~~W~~~---~~----~~---~~p~~-------~~~~vyv~~~~---------------G~l~~~d~~tG~~~W~~~~~~ 309 (377)
T TIGR03300 262 RVLWKRD---AS----SY---QGPAV-------DDNRLYVTDAD---------------GVVVALDRRSGSELWKNDELK 309 (377)
T ss_pred cEEEeec---cC----Cc---cCceE-------eCCEEEEECCC---------------CeEEEEECCCCcEEEcccccc
Confidence 4 5432 11 11 11122 27888886431 124456665444568764443
Q ss_pred cceeeeeeEEecCCcEEEEcCccCCCCCcccCCCCccccEEEeCCCCCCceeccCCCCCccccccceeeecCCCcEEEec
Q 044265 299 FGRIMGDMVMLPTGDVLIINGAQAGTQGFEMASNPCLFPVLYRPTQPAGLRFMTLNPGTIPRMYHSTANLLPDGRVLIAG 378 (517)
Q Consensus 299 ~~R~~~~~v~lpdG~v~v~GG~~~g~~g~~~~~~~~~~~e~YdP~t~~g~~W~~~~~~~~~R~yhs~a~ll~dG~V~v~G 378 (517)
. +.... .++.+++||+. ..+ | .+.++|+++.+ ..|+.- ..... ..+ .-++.|+++|+.+
T Consensus 310 ~-~~~ss-p~i~g~~l~~~-~~~-G------------~l~~~d~~tG~-~~~~~~--~~~~~-~~~-sp~~~~~~l~v~~ 368 (377)
T TIGR03300 310 Y-RQLTA-PAVVGGYLVVG-DFE-G------------YLHWLSREDGS-FVARLK--TDGSG-IAS-PPVVVGDGLLVQT 368 (377)
T ss_pred C-Ccccc-CEEECCEEEEE-eCC-C------------EEEEEECCCCC-EEEEEE--cCCCc-ccc-CCEEECCEEEEEe
Confidence 2 22222 23347777764 222 2 25677877651 134321 11111 122 2234688888776
Q ss_pred CC
Q 044265 379 SN 380 (517)
Q Consensus 379 G~ 380 (517)
.+
T Consensus 369 ~d 370 (377)
T TIGR03300 369 RD 370 (377)
T ss_pred CC
Confidence 53
No 57
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=96.36 E-value=1 Score=43.30 Aligned_cols=239 Identities=14% Similarity=0.149 Sum_probs=121.1
Q ss_pred EEEEECCCCCeEEccccCCCcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccCcCcc-ceeEE
Q 044265 71 SAILDLQTNQIRPLMILTDTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVNGRWY-GTDQI 149 (517)
Q Consensus 71 ~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~-~s~~~ 149 (517)
+.+|...|+.-...-.-++..-..-.+.+|++.++++|+ ..|++||... +.=... ......+-. .++..
T Consensus 22 IRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~----qhvRlyD~~S----~np~Pv--~t~e~h~kNVtaVgF 91 (311)
T KOG0315|consen 22 IRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN----QHVRLYDLNS----NNPNPV--ATFEGHTKNVTAVGF 91 (311)
T ss_pred eeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC----CeeEEEEccC----CCCCce--eEEeccCCceEEEEE
Confidence 556666666554332222333333446689999999997 5799999873 321111 111122222 23334
Q ss_pred cCCCcEEEEcCCCCCceEEe-CCC---CCceeccchhhccccccCCCCceEEEccCCcEEEEEC--CceEEEeCCCCeEE
Q 044265 150 LPDGSVIILGGKGANTVEYY-PPR---NGAVSFPFLADVEDKQMDNLYPYVHLLPNGHLFIFAN--DKAVMYDYETNKIA 223 (517)
Q Consensus 150 L~dG~v~vvGG~~~~~~E~y-P~~---~~w~~~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~Gg--~~~~~ydp~t~~w~ 223 (517)
-.|||-...||.++ ++.+| -.. ++-...+. +.+ .+.+-|+..=+++|. ..+++||..++.-.
T Consensus 92 ~~dgrWMyTgseDg-t~kIWdlR~~~~qR~~~~~s--------pVn---~vvlhpnQteLis~dqsg~irvWDl~~~~c~ 159 (311)
T KOG0315|consen 92 QCDGRWMYTGSEDG-TVKIWDLRSLSCQRNYQHNS--------PVN---TVVLHPNQTELISGDQSGNIRVWDLGENSCT 159 (311)
T ss_pred eecCeEEEecCCCc-eEEEEeccCcccchhccCCC--------Ccc---eEEecCCcceEEeecCCCcEEEEEccCCccc
Confidence 44899999888764 56666 221 11110000 000 122234444444554 35789999999776
Q ss_pred EecCCCCCCCCCCCCCCceeeeecccCccccEEEEEcCCcCCcccccCCCCCCCCceeEEEecCC--CCCceec---CCC
Q 044265 224 REYPPLDGGPRNYPSAGSSAMLALEGDFATAVIVVCGGAQFGAFIQRSTDTPAHGSCGRIIATSA--DPTWEME---DMP 298 (517)
Q Consensus 224 ~~~p~~p~~~r~~~~~g~~v~l~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~a~~s~~~id~~~~--~~~W~~~---~m~ 298 (517)
..+ ||.. .. +-...+|+ | +|+.++.+ .++| .|++.++... .-.-+.. .|.
T Consensus 160 ~~l--iPe~-~~-~i~sl~v~-~------dgsml~a~-nnkG-------------~cyvW~l~~~~~~s~l~P~~k~~ah 214 (311)
T KOG0315|consen 160 HEL--IPED-DT-SIQSLTVM-P------DGSMLAAA-NNKG-------------NCYVWRLLNHQTASELEPVHKFQAH 214 (311)
T ss_pred ccc--CCCC-Cc-ceeeEEEc-C------CCcEEEEe-cCCc-------------cEEEEEccCCCccccceEhhheecc
Confidence 433 4542 11 11122333 3 77765544 3322 2444444311 0011111 233
Q ss_pred cceeeeeeEEecCCcEEEEcCccCCCCCcccCCCCccccEEEeCCCC--------CCceeccCCCCCccccccceeeecC
Q 044265 299 FGRIMGDMVMLPTGDVLIINGAQAGTQGFEMASNPCLFPVLYRPTQP--------AGLRFMTLNPGTIPRMYHSTANLLP 370 (517)
Q Consensus 299 ~~R~~~~~v~lpdG~v~v~GG~~~g~~g~~~~~~~~~~~e~YdP~t~--------~g~~W~~~~~~~~~R~yhs~a~ll~ 370 (517)
.. .......-||+|.++.-++++ ++.+|+.+.- .+++| ++- +....
T Consensus 215 ~~-~il~C~lSPd~k~lat~ssdk-------------tv~iwn~~~~~kle~~l~gh~rW----------vWd--c~FS~ 268 (311)
T KOG0315|consen 215 NG-HILRCLLSPDVKYLATCSSDK-------------TVKIWNTDDFFKLELVLTGHQRW----------VWD--CAFSA 268 (311)
T ss_pred cc-eEEEEEECCCCcEEEeecCCc-------------eEEEEecCCceeeEEEeecCCce----------EEe--eeecc
Confidence 33 222336669999999987763 3556655433 11222 222 34467
Q ss_pred CCcEEEecCCCc
Q 044265 371 DGRVLIAGSNPH 382 (517)
Q Consensus 371 dG~V~v~GG~~~ 382 (517)
||+.+|+|+.++
T Consensus 269 dg~YlvTassd~ 280 (311)
T KOG0315|consen 269 DGEYLVTASSDH 280 (311)
T ss_pred CccEEEecCCCC
Confidence 999999999764
No 58
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=96.25 E-value=1.6 Score=44.29 Aligned_cols=137 Identities=10% Similarity=0.039 Sum_probs=70.5
Q ss_pred eEEEEECCC-CCeEEccccCC-CcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccCcCcccee
Q 044265 70 HSAILDLQT-NQIRPLMILTD-TWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVNGRWYGTD 147 (517)
Q Consensus 70 ~~~~yDp~t-~~w~~l~~~~~-~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~~s~ 147 (517)
.+.+||..+ ++++.+..... ......++-+||+.+.+|+.. ...+..|+... ..+++.. ........-..+
T Consensus 13 ~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~--~~~i~~~~~~~---~g~l~~~--~~~~~~~~p~~i 85 (330)
T PRK11028 13 QIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRP--EFRVLSYRIAD---DGALTFA--AESPLPGSPTHI 85 (330)
T ss_pred CEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECC--CCcEEEEEECC---CCceEEe--eeecCCCCceEE
Confidence 366778754 56665543321 112234456788876655543 35677787651 3455543 222222222345
Q ss_pred EEcCCCcEEEEcCCCCCceEEe-CCCCCce--eccchhhccccccCCCCceE-EEccCCcEEEEE---CCceEEEeCCCC
Q 044265 148 QILPDGSVIILGGKGANTVEYY-PPRNGAV--SFPFLADVEDKQMDNLYPYV-HLLPNGHLFIFA---NDKAVMYDYETN 220 (517)
Q Consensus 148 ~~L~dG~v~vvGG~~~~~~E~y-P~~~~w~--~~~~l~~t~~~~~~~~yp~~-~~~~~G~iyv~G---g~~~~~ydp~t~ 220 (517)
+..+||+.+.+.......+-+| ..+++-. ....+. ....|+. .+.++|+.+.+. .+.+.+||..++
T Consensus 86 ~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-------~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~ 158 (330)
T PRK11028 86 STDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-------GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDD 158 (330)
T ss_pred EECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-------CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCC
Confidence 6677898766666555566667 3322211 111110 0112333 456788655443 367899999764
No 59
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.13 E-value=0.32 Score=50.60 Aligned_cols=207 Identities=15% Similarity=0.204 Sum_probs=107.3
Q ss_pred cceEEEEECCCCCeEEccccCCCcccceee-cCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccCcCcc--
Q 044265 68 YAHSAILDLQTNQIRPLMILTDTWCSSGQI-LADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVNGRWY-- 144 (517)
Q Consensus 68 ~~~~~~yDp~t~~w~~l~~~~~~~c~~~~~-l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~-- 144 (517)
..++.+||.++......-..+...-+..-+ .-|+.+++.|+.+ +.+.+||.. +.. .. .++...--|
T Consensus 89 sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd---~v~k~~d~s----~a~-v~---~~l~~htDYVR 157 (487)
T KOG0310|consen 89 SGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDD---KVVKYWDLS----TAY-VQ---AELSGHTDYVR 157 (487)
T ss_pred cCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCC---ceEEEEEcC----CcE-EE---EEecCCcceeE
Confidence 347899996553322211112111111111 2478899998864 567777776 333 22 233322111
Q ss_pred ceeEEcCCCcEEEEcCCCCCceEEe-CCCC-CceeccchhhccccccCCCCceEEEccCCcEEEE-ECCceEEEeCCCCe
Q 044265 145 GTDQILPDGSVIILGGKGANTVEYY-PPRN-GAVSFPFLADVEDKQMDNLYPYVHLLPNGHLFIF-ANDKAVMYDYETNK 221 (517)
Q Consensus 145 ~s~~~L~dG~v~vvGG~~~~~~E~y-P~~~-~w~~~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~-Gg~~~~~ydp~t~~ 221 (517)
...+.-.++.+++.||+++ .+..| .... .|.. . +.. ..+. -.+..++.|.+++. ||+++.+||..++.
T Consensus 158 ~g~~~~~~~hivvtGsYDg-~vrl~DtR~~~~~v~-e-lnh-----g~pV-e~vl~lpsgs~iasAgGn~vkVWDl~~G~ 228 (487)
T KOG0310|consen 158 CGDISPANDHIVVTGSYDG-KVRLWDTRSLTSRVV-E-LNH-----GCPV-ESVLALPSGSLIASAGGNSVKVWDLTTGG 228 (487)
T ss_pred eeccccCCCeEEEecCCCc-eEEEEEeccCCceeE-E-ecC-----CCce-eeEEEcCCCCEEEEcCCCeEEEEEecCCc
Confidence 1122222567889999875 57777 4332 4431 1 100 0000 12556778766665 67899999998765
Q ss_pred EEEecCCCCCCCCCCCCCCceeeeecccCccccEEEEEcCCcCCcccccCCCCCCCCceeEEEecCCCCCceec-CCCcc
Q 044265 222 IAREYPPLDGGPRNYPSAGSSAMLALEGDFATAVIVVCGGAQFGAFIQRSTDTPAHGSCGRIIATSADPTWEME-DMPFG 300 (517)
Q Consensus 222 w~~~~p~~p~~~r~~~~~g~~v~l~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W~~~-~m~~~ 300 (517)
-. +..|- ++. -+...|.+. .++.=++.||.+.. +-.||. ..|+.. .|.++
T Consensus 229 ql--l~~~~----~H~--KtVTcL~l~---s~~~rLlS~sLD~~--------------VKVfd~----t~~Kvv~s~~~~ 279 (487)
T KOG0310|consen 229 QL--LTSMF----NHN--KTVTCLRLA---SDSTRLLSGSLDRH--------------VKVFDT----TNYKVVHSWKYP 279 (487)
T ss_pred ee--hhhhh----ccc--ceEEEEEee---cCCceEeecccccc--------------eEEEEc----cceEEEEeeecc
Confidence 32 32222 111 122223321 24567788887721 234552 356665 55443
Q ss_pred eeeeeeEEecCCcEEEEcCccCCC
Q 044265 301 RIMGDMVMLPTGDVLIINGAQAGT 324 (517)
Q Consensus 301 R~~~~~v~lpdG~v~v~GG~~~g~ 324 (517)
---.++.+-||++.+|+|..+ |.
T Consensus 280 ~pvLsiavs~dd~t~viGmsn-Gl 302 (487)
T KOG0310|consen 280 GPVLSIAVSPDDQTVVIGMSN-GL 302 (487)
T ss_pred cceeeEEecCCCceEEEeccc-ce
Confidence 333334566899999999876 53
No 60
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=96.10 E-value=1.6 Score=42.94 Aligned_cols=244 Identities=15% Similarity=0.175 Sum_probs=130.4
Q ss_pred eCCEEEEEeccCCCC-CCcccCCCc---cccccccc---ccccCCcceEEEEECCCCCeE------EccccCCCccccee
Q 044265 30 RFNTVVLLDRTNIGP-SRKMLGRGR---CRLDRNDR---ALKRDCYAHSAILDLQTNQIR------PLMILTDTWCSSGQ 96 (517)
Q Consensus 30 ~~gkv~~~gg~~~g~-~~~~~~~G~---~~~~~~~~---~~~~d~~~~~~~yDp~t~~w~------~l~~~~~~~c~~~~ 96 (517)
.|||++||+....+- ..+.++.-. |.+-|+.- -+++|+ ...+|+..+..-+ ..-..|..+-+...
T Consensus 75 qDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN--~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~ 152 (343)
T KOG0286|consen 75 QDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDN--KCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCR 152 (343)
T ss_pred cCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCc--eeEEEecccccccccceeeeeecCccceeEEEE
Confidence 599999999876432 224443321 44444311 255554 4678998866322 22234666666667
Q ss_pred ecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCcccc-CcCccceeEEcC-CCcEEEEcCCCCCceEEe-CCCC
Q 044265 97 ILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELV-NGRWYGTDQILP-DGSVIILGGKGANTVEYY-PPRN 173 (517)
Q Consensus 97 ~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~-~~R~~~s~~~L~-dG~v~vvGG~~~~~~E~y-P~~~ 173 (517)
++.|+.|+..-|. .++-.||.+ +.+=+.. .. ..---.+....| +++.||.||.+. +..+| -...
T Consensus 153 f~dD~~ilT~SGD----~TCalWDie----~g~~~~~----f~GH~gDV~slsl~p~~~ntFvSg~cD~-~aklWD~R~~ 219 (343)
T KOG0286|consen 153 FLDDNHILTGSGD----MTCALWDIE----TGQQTQV----FHGHTGDVMSLSLSPSDGNTFVSGGCDK-SAKLWDVRSG 219 (343)
T ss_pred EcCCCceEecCCC----ceEEEEEcc----cceEEEE----ecCCcccEEEEecCCCCCCeEEeccccc-ceeeeeccCc
Confidence 7888888877664 577888887 3332211 11 000122344455 899999999874 33444 2222
Q ss_pred CceeccchhhccccccCCCCceEEEccCCcEEEEECC--ceEEEeCCCCeEEEecCCCCCCCCCCCCCCceeeeecccCc
Q 044265 174 GAVSFPFLADVEDKQMDNLYPYVHLLPNGHLFIFAND--KAVMYDYETNKIAREYPPLDGGPRNYPSAGSSAMLALEGDF 251 (517)
Q Consensus 174 ~w~~~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~Gg~--~~~~ydp~t~~w~~~~p~~p~~~r~~~~~g~~v~l~~~~~~ 251 (517)
.-.. .+.-...| -..+...|+|.-|+.|.. ...+||.+.++-...+.. ..-..+ -.+|.+..
T Consensus 220 ~c~q-tF~ghesD------INsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~---~~~~~g--itSv~FS~---- 283 (343)
T KOG0286|consen 220 QCVQ-TFEGHESD------INSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSH---DSIICG--ITSVAFSK---- 283 (343)
T ss_pred ceeE-eecccccc------cceEEEccCCCeeeecCCCceeEEEeecCCcEEeeecc---CcccCC--ceeEEEcc----
Confidence 1110 11001111 112445689999999974 578999999876533321 122333 23555553
Q ss_pred cccEEEEEcCCcCCcccccCCCCCCCCceeEEEecCCCCCceecCCCcceeeeeeEEecCCcEEEEcCcc
Q 044265 252 ATAVIVVCGGAQFGAFIQRSTDTPAHGSCGRIIATSADPTWEMEDMPFGRIMGDMVMLPTGDVLIINGAQ 321 (517)
Q Consensus 252 ~~gkI~v~GG~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W~~~~m~~~R~~~~~v~lpdG~v~v~GG~~ 321 (517)
.|+++.+|..+. .|...|.-. ...=....-..-|...- -+-|||.-+..|-.+
T Consensus 284 -SGRlLfagy~d~--------------~c~vWDtlk-~e~vg~L~GHeNRvScl-~~s~DG~av~TgSWD 336 (343)
T KOG0286|consen 284 -SGRLLFAGYDDF--------------TCNVWDTLK-GERVGVLAGHENRVSCL-GVSPDGMAVATGSWD 336 (343)
T ss_pred -cccEEEeeecCC--------------ceeEeeccc-cceEEEeeccCCeeEEE-EECCCCcEEEecchh
Confidence 799999986542 133333210 00000012234566654 345899888876543
No 61
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.03 E-value=0.51 Score=49.10 Aligned_cols=247 Identities=16% Similarity=0.195 Sum_probs=121.6
Q ss_pred cceEEEEECCCCCeEE-ccccCCCcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCc-eEeccCccccCcCccc
Q 044265 68 YAHSAILDLQTNQIRP-LMILTDTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCD-WVELDDVELVNGRWYG 145 (517)
Q Consensus 68 ~~~~~~yDp~t~~w~~-l~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~-W~~~~~~~m~~~R~~~ 145 (517)
.+.+.+|+..+..-.. +....+.-| ++.+-.||+++.+|+.. -.+.+||-. +.. -..+....-+..+-.+
T Consensus 47 S~rvqly~~~~~~~~k~~srFk~~v~-s~~fR~DG~LlaaGD~s---G~V~vfD~k----~r~iLR~~~ah~apv~~~~f 118 (487)
T KOG0310|consen 47 SVRVQLYSSVTRSVRKTFSRFKDVVY-SVDFRSDGRLLAAGDES---GHVKVFDMK----SRVILRQLYAHQAPVHVTKF 118 (487)
T ss_pred ccEEEEEecchhhhhhhHHhhcccee-EEEeecCCeEEEccCCc---CcEEEeccc----cHHHHHHHhhccCceeEEEe
Confidence 4467788877655443 222333333 34566799999999864 468999954 211 0011000111111111
Q ss_pred eeEEcCCCcEEEEcCCCCCceEEeCCCCCceeccchhhccccccCCCCceE-EEc-cCCcEEEEECC--ceEEEeCCCC-
Q 044265 146 TDQILPDGSVIILGGKGANTVEYYPPRNGAVSFPFLADVEDKQMDNLYPYV-HLL-PNGHLFIFAND--KAVMYDYETN- 220 (517)
Q Consensus 146 s~~~L~dG~v~vvGG~~~~~~E~yP~~~~w~~~~~l~~t~~~~~~~~yp~~-~~~-~~G~iyv~Gg~--~~~~ydp~t~- 220 (517)
+. .|+.+++.|+-+ ..+.+|...+...... +....| |-++ ... .+++|++.||. .+.+||.++.
T Consensus 119 --~~-~d~t~l~s~sDd-~v~k~~d~s~a~v~~~-l~~htD------YVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~ 187 (487)
T KOG0310|consen 119 --SP-QDNTMLVSGSDD-KVVKYWDLSTAYVQAE-LSGHTD------YVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT 187 (487)
T ss_pred --cc-cCCeEEEecCCC-ceEEEEEcCCcEEEEE-ecCCcc------eeEeeccccCCCeEEEecCCCceEEEEEeccCC
Confidence 11 378888877643 3344442221111111 111111 2222 222 37889999985 5789999876
Q ss_pred eEEEecCCCCCCCCCCCCCCceeeeecccCccccEEEEEcCCcCCcccccCCCCCCCCceeEEEecCCCCCceecCCC-c
Q 044265 221 KIAREYPPLDGGPRNYPSAGSSAMLALEGDFATAVIVVCGGAQFGAFIQRSTDTPAHGSCGRIIATSADPTWEMEDMP-F 299 (517)
Q Consensus 221 ~w~~~~p~~p~~~r~~~~~g~~v~l~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W~~~~m~-~ 299 (517)
.|...+ ..+ .|- -..+.||. +..|..+||.. +-.+|+... ++ ....|. +
T Consensus 188 ~~v~el---nhg---~pV-e~vl~lps-----gs~iasAgGn~----------------vkVWDl~~G-~q-ll~~~~~H 237 (487)
T KOG0310|consen 188 SRVVEL---NHG---CPV-ESVLALPS-----GSLIASAGGNS----------------VKVWDLTTG-GQ-LLTSMFNH 237 (487)
T ss_pred ceeEEe---cCC---Cce-eeEEEcCC-----CCEEEEcCCCe----------------EEEEEecCC-ce-ehhhhhcc
Confidence 665433 221 110 12233431 24555555532 233454421 10 001222 1
Q ss_pred ceeeeeeEEecCCcEEEEcCccCCCCCcccCCCCccccEEEeCCCCCCceeccCCCCCccccccceeeecCCCcEEEecC
Q 044265 300 GRIMGDMVMLPTGDVLIINGAQAGTQGFEMASNPCLFPVLYRPTQPAGLRFMTLNPGTIPRMYHSTANLLPDGRVLIAGS 379 (517)
Q Consensus 300 ~R~~~~~v~lpdG~v~v~GG~~~g~~g~~~~~~~~~~~e~YdP~t~~g~~W~~~~~~~~~R~yhs~a~ll~dG~V~v~GG 379 (517)
-..--+....-|++=++.||.+ + .+-+|| +. .|+.+-.+..|----|.+ +.||++.+|+|.
T Consensus 238 ~KtVTcL~l~s~~~rLlS~sLD-~------------~VKVfd--~t---~~Kvv~s~~~~~pvLsia-vs~dd~t~viGm 298 (487)
T KOG0310|consen 238 NKTVTCLRLASDSTRLLSGSLD-R------------HVKVFD--TT---NYKVVHSWKYPGPVLSIA-VSPDDQTVVIGM 298 (487)
T ss_pred cceEEEEEeecCCceEeecccc-c------------ceEEEE--cc---ceEEEEeeecccceeeEE-ecCCCceEEEec
Confidence 1111122222467778888876 2 368898 34 576665554444334444 368999999998
Q ss_pred CCc
Q 044265 380 NPH 382 (517)
Q Consensus 380 ~~~ 382 (517)
...
T Consensus 299 snG 301 (487)
T KOG0310|consen 299 SNG 301 (487)
T ss_pred ccc
Confidence 653
No 62
>PF13854 Kelch_5: Kelch motif
Probab=95.73 E-value=0.022 Score=39.30 Aligned_cols=41 Identities=12% Similarity=0.117 Sum_probs=28.7
Q ss_pred CCcceeeeeeEEecCCcEEEEcCccCCCCCcccCCCCccccEEEeCCC
Q 044265 297 MPFGRIMGDMVMLPTGDVLIINGAQAGTQGFEMASNPCLFPVLYRPTQ 344 (517)
Q Consensus 297 m~~~R~~~~~v~lpdG~v~v~GG~~~g~~g~~~~~~~~~~~e~YdP~t 344 (517)
+|.+|..|++++. +++|||+||... . .......+.+||..+
T Consensus 1 ~P~~R~~hs~~~~-~~~iyi~GG~~~-~-----~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVV-GNNIYIFGGYSG-N-----NNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEE-CCEEEEEcCccC-C-----CCCEECcEEEEECCC
Confidence 4789999997764 999999999872 1 112233567777654
No 63
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.65 E-value=3.7 Score=43.99 Aligned_cols=221 Identities=15% Similarity=0.149 Sum_probs=120.0
Q ss_pred eEEEEECCCCC--eEEccccCCCcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccCcCcccee
Q 044265 70 HSAILDLQTNQ--IRPLMILTDTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVNGRWYGTD 147 (517)
Q Consensus 70 ~~~~yDp~t~~--w~~l~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~~s~ 147 (517)
...+|+..+.+ -......++..+....+.+||++++.|..+ ..+++||... ...=... -+...-+-.++
T Consensus 182 ~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D---~tiriwd~~~---~~~~~~~---l~gH~~~v~~~ 252 (456)
T KOG0266|consen 182 LIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDD---KTLRIWDLKD---DGRNLKT---LKGHSTYVTSV 252 (456)
T ss_pred cEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCC---ceEEEeeccC---CCeEEEE---ecCCCCceEEE
Confidence 35566664444 222224577778888899999988887764 7899999841 2122111 12233344677
Q ss_pred EEcCCCcEEEEcCCCCCceEEe-CCCCCceeccchhhccccccCCCCceEEEccCCcEEEEECC--ceEEEeCCCCeE--
Q 044265 148 QILPDGSVIILGGKGANTVEYY-PPRNGAVSFPFLADVEDKQMDNLYPYVHLLPNGHLFIFAND--KAVMYDYETNKI-- 222 (517)
Q Consensus 148 ~~L~dG~v~vvGG~~~~~~E~y-P~~~~w~~~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~Gg~--~~~~ydp~t~~w-- 222 (517)
+.-++|+.++.|+.+ .++.+| ..+.+-. ..+....+ .--.+..-++|++++.+.. .+.+||..++.-
T Consensus 253 ~f~p~g~~i~Sgs~D-~tvriWd~~~~~~~--~~l~~hs~-----~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~ 324 (456)
T KOG0266|consen 253 AFSPDGNLLVSGSDD-GTVRIWDVRTGECV--RKLKGHSD-----GISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLC 324 (456)
T ss_pred EecCCCCEEEEecCC-CcEEEEeccCCeEE--EeeeccCC-----ceEEEEECCCCCEEEEcCCCccEEEEECCCCceee
Confidence 788889777766654 578888 4442221 11111000 0112445568999988863 578999998873
Q ss_pred EEecCCCCCCCCCCCCCCceeeeecccCccccEEEEEcCCcCCcccccCCCCCCCCceeEEEecCC--CCCceecCCCcc
Q 044265 223 AREYPPLDGGPRNYPSAGSSAMLALEGDFATAVIVVCGGAQFGAFIQRSTDTPAHGSCGRIIATSA--DPTWEMEDMPFG 300 (517)
Q Consensus 223 ~~~~p~~p~~~r~~~~~g~~v~l~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~a~~s~~~id~~~~--~~~W~~~~m~~~ 300 (517)
.+.+ .......+ -..+... .+++.++++..+. . +-.+|+... ...|...... .
T Consensus 325 ~~~~---~~~~~~~~--~~~~~fs-----p~~~~ll~~~~d~-~-------------~~~w~l~~~~~~~~~~~~~~~-~ 379 (456)
T KOG0266|consen 325 LKLL---SGAENSAP--VTSVQFS-----PNGKYLLSASLDR-T-------------LKLWDLRSGKSVGTYTGHSNL-V 379 (456)
T ss_pred eecc---cCCCCCCc--eeEEEEC-----CCCcEEEEecCCC-e-------------EEEEEccCCcceeeecccCCc-c
Confidence 2222 21101001 1223332 2677777776542 1 112222211 1122222111 2
Q ss_pred eeeeeeEEecCCcEEEEcCccCCCCCcccCCCCccccEEEeCCCC
Q 044265 301 RIMGDMVMLPTGDVLIINGAQAGTQGFEMASNPCLFPVLYRPTQP 345 (517)
Q Consensus 301 R~~~~~v~lpdG~v~v~GG~~~g~~g~~~~~~~~~~~e~YdP~t~ 345 (517)
|+....+..++|+.++.|..+ + .+++||+.+.
T Consensus 380 ~~~~~~~~~~~~~~i~sg~~d-~------------~v~~~~~~s~ 411 (456)
T KOG0266|consen 380 RCIFSPTLSTGGKLIYSGSED-G------------SVYVWDSSSG 411 (456)
T ss_pred eeEecccccCCCCeEEEEeCC-c------------eEEEEeCCcc
Confidence 555554556788988888765 2 4799999875
No 64
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=95.54 E-value=2.2 Score=43.44 Aligned_cols=52 Identities=19% Similarity=0.219 Sum_probs=41.1
Q ss_pred eEEEEECCCCCeEEccccCCCcccceeecCCCcEEEecCCCCCCCeEEEecCCCC
Q 044265 70 HSAILDLQTNQIRPLMILTDTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEA 124 (517)
Q Consensus 70 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~ 124 (517)
.+.+||+.|.+=...-..|..|.-..+-.+||+.++.|-.+ .+|++|||+++
T Consensus 138 TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~d---g~I~lwdpktg 189 (480)
T KOG0271|consen 138 TVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKD---GSIRLWDPKTG 189 (480)
T ss_pred eEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccC---CeEEEecCCCC
Confidence 58899998876544445677887777888999999998764 68999999854
No 65
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=95.24 E-value=0.75 Score=44.88 Aligned_cols=139 Identities=18% Similarity=0.260 Sum_probs=88.5
Q ss_pred eEEEEECCCCCeEEccccCCCcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccCcCccceeEE
Q 044265 70 HSAILDLQTNQIRPLMILTDTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVNGRWYGTDQI 149 (517)
Q Consensus 70 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~~s~~~ 149 (517)
...+||..+++=+..-..|.+---+.++-+|.+-+|.|-.+ +++..||... .++.+.. ..+. .-|-.++..
T Consensus 86 ~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrD---kTiklwnt~g---~ck~t~~--~~~~-~~WVscvrf 156 (315)
T KOG0279|consen 86 TLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRD---KTIKLWNTLG---VCKYTIH--EDSH-REWVSCVRF 156 (315)
T ss_pred eEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCc---ceeeeeeecc---cEEEEEe--cCCC-cCcEEEEEE
Confidence 57899999987666555555544456778899999998765 7889999873 4566544 3343 557777788
Q ss_pred cCCC-cEEEEcCCCCCceEEeCCCCCceeccchhhccccccCCCCceEEEccCCcEEEEECCc--eEEEeCCCCeEE
Q 044265 150 LPDG-SVIILGGKGANTVEYYPPRNGAVSFPFLADVEDKQMDNLYPYVHLLPNGHLFIFANDK--AVMYDYETNKIA 223 (517)
Q Consensus 150 L~dG-~v~vvGG~~~~~~E~yP~~~~w~~~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~Gg~~--~~~ydp~t~~w~ 223 (517)
.|+. ..+|+.+...+++.+|-..+.-....++- ....-..+.+.|||.+.+.||++ +.+||....+-.
T Consensus 157 sP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~g------h~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~l 227 (315)
T KOG0279|consen 157 SPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIG------HSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNL 227 (315)
T ss_pred cCCCCCcEEEEccCCceEEEEccCCcchhhcccc------ccccEEEEEECCCCCEEecCCCCceEEEEEccCCcee
Confidence 8873 45555555557788872221111101111 11122246778999999999975 556777765543
No 66
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=94.73 E-value=0.68 Score=44.48 Aligned_cols=139 Identities=17% Similarity=0.179 Sum_probs=82.6
Q ss_pred eEEEEECCCCCeEEccccCC--CcccceeecCCCcEEEecCCCCC-C-CeEEEecCCCCCCCCceEe-ccCccccCcC--
Q 044265 70 HSAILDLQTNQIRPLMILTD--TWCSSGQILADGTVLQTGGDLDG-Y-KKIRKFSPCEANGLCDWVE-LDDVELVNGR-- 142 (517)
Q Consensus 70 ~~~~yDp~t~~w~~l~~~~~--~~c~~~~~l~dG~l~v~GG~~~g-~-~~v~~ydp~~~~~t~~W~~-~~~~~m~~~R-- 142 (517)
.+++|+..+++|+.+...+. ..... .++.||.+|-+.-...+ . ..+-.||.. +.+|.+ . +++..+
T Consensus 71 ~~~Vys~~~~~Wr~~~~~~~~~~~~~~-~v~~~G~lyw~~~~~~~~~~~~IvsFDl~----~E~f~~~i---~~P~~~~~ 142 (230)
T TIGR01640 71 EHQVYTLGSNSWRTIECSPPHHPLKSR-GVCINGVLYYLAYTLKTNPDYFIVSFDVS----SERFKEFI---PLPCGNSD 142 (230)
T ss_pred cEEEEEeCCCCccccccCCCCccccCC-eEEECCEEEEEEEECCCCCcEEEEEEEcc----cceEeeee---ecCccccc
Confidence 68999999999998874222 11222 55678888777643221 1 268889998 788985 4 333322
Q ss_pred --ccceeEEcCCCcEEEEcCCCC-CceEEe-CC---CCCcee---ccchhhccccccCCCCceEEEccCCcEEEEECC--
Q 044265 143 --WYGTDQILPDGSVIILGGKGA-NTVEYY-PP---RNGAVS---FPFLADVEDKQMDNLYPYVHLLPNGHLFIFAND-- 210 (517)
Q Consensus 143 --~~~s~~~L~dG~v~vvGG~~~-~~~E~y-P~---~~~w~~---~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~Gg~-- 210 (517)
.+.....+ +|++-++.-... .++|+| -+ ...|.. .++.... ... ...+ ..++..+|+|++....
T Consensus 143 ~~~~~~L~~~-~G~L~~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i~~~~~~-~~~-~~~~-~~~~~~~g~I~~~~~~~~ 218 (230)
T TIGR01640 143 SVDYLSLINY-KGKLAVLKQKKDTNNFDLWVLNDAGKQEWSKLFTVPIPPLP-DLV-DDNF-LSGFTDKGEIVLCCEDEN 218 (230)
T ss_pred cccceEEEEE-CCEEEEEEecCCCCcEEEEEECCCCCCceeEEEEEcCcchh-hhh-hhee-EeEEeeCCEEEEEeCCCC
Confidence 24566777 799887765432 458888 32 345863 2221000 000 0112 3456678998887653
Q ss_pred -c-eEEEeCCCC
Q 044265 211 -K-AVMYDYETN 220 (517)
Q Consensus 211 -~-~~~ydp~t~ 220 (517)
. +.+||+++|
T Consensus 219 ~~~~~~y~~~~~ 230 (230)
T TIGR01640 219 PFYIFYYNVGEN 230 (230)
T ss_pred ceEEEEEeccCC
Confidence 2 678888765
No 67
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=94.56 E-value=3.5 Score=39.82 Aligned_cols=75 Identities=15% Similarity=0.114 Sum_probs=47.3
Q ss_pred eEEEEECCCCCeEEccccCCCcccceeec-CCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCcccc----CcCcc
Q 044265 70 HSAILDLQTNQIRPLMILTDTWCSSGQIL-ADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELV----NGRWY 144 (517)
Q Consensus 70 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l-~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~----~~R~~ 144 (517)
....||+.+++.+...... ..+.++. .+|++|+.... ...++|+. +.+++.+ .... ....-
T Consensus 23 ~i~~~~~~~~~~~~~~~~~---~~G~~~~~~~g~l~v~~~~-----~~~~~d~~----~g~~~~~--~~~~~~~~~~~~~ 88 (246)
T PF08450_consen 23 RIYRVDPDTGEVEVIDLPG---PNGMAFDRPDGRLYVADSG-----GIAVVDPD----TGKVTVL--ADLPDGGVPFNRP 88 (246)
T ss_dssp EEEEEETTTTEEEEEESSS---EEEEEEECTTSEEEEEETT-----CEEEEETT----TTEEEEE--EEEETTCSCTEEE
T ss_pred EEEEEECCCCeEEEEecCC---CceEEEEccCCEEEEEEcC-----ceEEEecC----CCcEEEE--eeccCCCcccCCC
Confidence 4678999988776544333 3444555 68999998653 45677988 7788776 4442 11223
Q ss_pred ceeEEcCCCcEEEE
Q 044265 145 GTDQILPDGSVIIL 158 (517)
Q Consensus 145 ~s~~~L~dG~v~vv 158 (517)
.-.++-++|++|+.
T Consensus 89 ND~~vd~~G~ly~t 102 (246)
T PF08450_consen 89 NDVAVDPDGNLYVT 102 (246)
T ss_dssp EEEEE-TTS-EEEE
T ss_pred ceEEEcCCCCEEEE
Confidence 45677789999886
No 68
>PLN00181 protein SPA1-RELATED; Provisional
Probab=94.45 E-value=4.1 Score=46.88 Aligned_cols=237 Identities=12% Similarity=0.056 Sum_probs=112.0
Q ss_pred ccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEec--cCccccCcCccceeEEcC-CCcEEEEcCCCCCceEE
Q 044265 92 CSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVEL--DDVELVNGRWYGTDQILP-DGSVIILGGKGANTVEY 168 (517)
Q Consensus 92 c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~--~~~~m~~~R~~~s~~~L~-dG~v~vvGG~~~~~~E~ 168 (517)
..+..+.+||+++++||.+ ..+++||.... ....... +...+.....-.+.+..+ ++..++.|+.+ .++.+
T Consensus 486 V~~i~fs~dg~~latgg~D---~~I~iwd~~~~--~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~D-g~v~l 559 (793)
T PLN00181 486 VCAIGFDRDGEFFATAGVN---KKIKIFECESI--IKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFE-GVVQV 559 (793)
T ss_pred EEEEEECCCCCEEEEEeCC---CEEEEEECCcc--cccccccccceEEecccCceeeEEeccCCCCEEEEEeCC-CeEEE
Confidence 3345567899999999974 68899986410 0111110 001111111111223322 45666767654 46777
Q ss_pred e-CCCCCceeccchhhccccccCCCCceEEEc-cCCcEEEEECC--ceEEEeCCCCeEEEecCCCCCCCCCCCCCCceee
Q 044265 169 Y-PPRNGAVSFPFLADVEDKQMDNLYPYVHLL-PNGHLFIFAND--KAVMYDYETNKIAREYPPLDGGPRNYPSAGSSAM 244 (517)
Q Consensus 169 y-P~~~~w~~~~~l~~t~~~~~~~~yp~~~~~-~~G~iyv~Gg~--~~~~ydp~t~~w~~~~p~~p~~~r~~~~~g~~v~ 244 (517)
| ..+.+... .+.. +....+ .+... .++.+++.|+. .+.+||..+..-...+ ... .. -.++.
T Consensus 560 Wd~~~~~~~~--~~~~----H~~~V~-~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~---~~~-~~----v~~v~ 624 (793)
T PLN00181 560 WDVARSQLVT--EMKE----HEKRVW-SIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI---KTK-AN----ICCVQ 624 (793)
T ss_pred EECCCCeEEE--EecC----CCCCEE-EEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE---ecC-CC----eEEEE
Confidence 7 43322110 0110 000111 12233 37888888874 5889999876544332 110 00 12222
Q ss_pred eecccCccccEEEEEcCCcCCcccccCCCCCCCCceeEEEecCCCCCceecCCCcceeeeeeEEecCCcEEEEcCccCCC
Q 044265 245 LALEGDFATAVIVVCGGAQFGAFIQRSTDTPAHGSCGRIIATSADPTWEMEDMPFGRIMGDMVMLPTGDVLIINGAQAGT 324 (517)
Q Consensus 245 l~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W~~~~m~~~R~~~~~v~lpdG~v~v~GG~~~g~ 324 (517)
+.. .+++++++|+.+. .+..+|+...........-..... ..+...++..++.++.+ +
T Consensus 625 ~~~----~~g~~latgs~dg--------------~I~iwD~~~~~~~~~~~~~h~~~V--~~v~f~~~~~lvs~s~D-~- 682 (793)
T PLN00181 625 FPS----ESGRSLAFGSADH--------------KVYYYDLRNPKLPLCTMIGHSKTV--SYVRFVDSSTLVSSSTD-N- 682 (793)
T ss_pred EeC----CCCCEEEEEeCCC--------------eEEEEECCCCCccceEecCCCCCE--EEEEEeCCCEEEEEECC-C-
Confidence 211 2578888887652 234455542110111110011111 22444588888888765 2
Q ss_pred CCcccCCCCccccEEEeCCCCC-CceeccCCCCCccccccceeeecCCCcEEEecCCCc
Q 044265 325 QGFEMASNPCLFPVLYRPTQPA-GLRFMTLNPGTIPRMYHSTANLLPDGRVLIAGSNPH 382 (517)
Q Consensus 325 ~g~~~~~~~~~~~e~YdP~t~~-g~~W~~~~~~~~~R~yhs~a~ll~dG~V~v~GG~~~ 382 (517)
++.+||..+.. +..|..+..............+.++|+++++|+.++
T Consensus 683 -----------~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~ 730 (793)
T PLN00181 683 -----------TLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETN 730 (793)
T ss_pred -----------EEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCC
Confidence 36788876531 012322211111111112244568999999998654
No 69
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=94.08 E-value=7.6 Score=39.41 Aligned_cols=137 Identities=13% Similarity=0.197 Sum_probs=84.3
Q ss_pred eEEEEECCCCCeEEccccCCCcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEec-cCccccCcCccceeE
Q 044265 70 HSAILDLQTNQIRPLMILTDTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVEL-DDVELVNGRWYGTDQ 148 (517)
Q Consensus 70 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~-~~~~m~~~R~~~s~~ 148 (517)
.+.+||..++.|.-.-..|..--....+..||.++++|+.. ..+.+|+-.++ ...|.-. .-.+|..-+|.+
T Consensus 87 ~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdms---G~v~v~~~stg--~~~~~~~~e~~dieWl~WHp--- 158 (399)
T KOG0296|consen 87 LAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMS---GKVLVFKVSTG--GEQWKLDQEVEDIEWLKWHP--- 158 (399)
T ss_pred eEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCC---ccEEEEEcccC--ceEEEeecccCceEEEEecc---
Confidence 47799999999765444444333334567899999999985 46888887743 5667643 114566667765
Q ss_pred EcCCCcEEEEcCCCCCceEEe--CCCCCceeccchhhccccccCCCCceEEEccCCcEEEEEC--CceEEEeCCCCeEEE
Q 044265 149 ILPDGSVIILGGKGANTVEYY--PPRNGAVSFPFLADVEDKQMDNLYPYVHLLPNGHLFIFAN--DKAVMYDYETNKIAR 224 (517)
Q Consensus 149 ~L~dG~v~vvGG~~~~~~E~y--P~~~~w~~~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~Gg--~~~~~ydp~t~~w~~ 224 (517)
-+.|+.+|-. ..++.+| |....-..++- .. .+ --..-++|+||..+.|- .++.+|||++.+-..
T Consensus 159 ---~a~illAG~~-DGsvWmw~ip~~~~~kv~~G---h~----~~-ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~ 226 (399)
T KOG0296|consen 159 ---RAHILLAGST-DGSVWMWQIPSQALCKVMSG---HN----SP-CTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLH 226 (399)
T ss_pred ---cccEEEeecC-CCcEEEEECCCcceeeEecC---CC----CC-cccccccCCCceEEEEecCceEEEEecCCCceeE
Confidence 3567666654 3567777 54322222211 00 00 01234568998877774 468899999987654
Q ss_pred ec
Q 044265 225 EY 226 (517)
Q Consensus 225 ~~ 226 (517)
.+
T Consensus 227 ~~ 228 (399)
T KOG0296|consen 227 KI 228 (399)
T ss_pred Ee
Confidence 43
No 70
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=93.79 E-value=4.3 Score=40.89 Aligned_cols=162 Identities=16% Similarity=0.147 Sum_probs=80.5
Q ss_pred CCCCceEEcccCcccceeEEEEeeCCEEEEEeccCCCCCCcccCCCcccccccccccccCCcceEEEEECCCCCeEEccc
Q 044265 7 DLPGTWELVLADAGISSMHTAVTRFNTVVLLDRTNIGPSRKMLGRGRCRLDRNDRALKRDCYAHSAILDLQTNQIRPLMI 86 (517)
Q Consensus 7 ~~~g~W~~~~~~~~~~~~h~~ll~~gkv~~~gg~~~g~~~~~~~~G~~~~~~~~~~~~~d~~~~~~~yDp~t~~w~~l~~ 86 (517)
..-.+|+.+......+..-...+.||++++++.. |+ ....+||-...|++...
T Consensus 131 DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~-----------G~----------------~~~s~~~G~~~w~~~~r 183 (302)
T PF14870_consen 131 DGGKTWQAVVSETSGSINDITRSSDGRYVAVSSR-----------GN----------------FYSSWDPGQTTWQPHNR 183 (302)
T ss_dssp STTSSEEEEE-S----EEEEEE-TTS-EEEEETT-----------SS----------------EEEEE-TT-SS-EEEE-
T ss_pred CCCCCeeEcccCCcceeEeEEECCCCcEEEEECc-----------cc----------------EEEEecCCCccceEEcc
Confidence 3445899876433322223445689998888742 32 24567888888998877
Q ss_pred cCCCcccceeecCCCcEEEecCCCCCCCeEEEec-CCCCCCCCceEeccCccccCcCc-cceeEEcCCCcEEEEcCCCCC
Q 044265 87 LTDTWCSSGQILADGTVLQTGGDLDGYKKIRKFS-PCEANGLCDWVELDDVELVNGRW-YGTDQILPDGSVIILGGKGAN 164 (517)
Q Consensus 87 ~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~yd-p~~~~~t~~W~~~~~~~m~~~R~-~~s~~~L~dG~v~vvGG~~~~ 164 (517)
....+-....+.+|+.++++. .. -.++.=| +.. ..+|.+. ..+.....+ +..++.-+++.++++||...
T Consensus 184 ~~~~riq~~gf~~~~~lw~~~-~G---g~~~~s~~~~~---~~~w~~~-~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~- 254 (302)
T PF14870_consen 184 NSSRRIQSMGFSPDGNLWMLA-RG---GQIQFSDDPDD---GETWSEP-IIPIKTNGYGILDLAYRPPNEIWAVGGSGT- 254 (302)
T ss_dssp -SSS-EEEEEE-TTS-EEEEE-TT---TEEEEEE-TTE---EEEE----B-TTSS--S-EEEEEESSSS-EEEEESTT--
T ss_pred CccceehhceecCCCCEEEEe-CC---cEEEEccCCCC---ccccccc-cCCcccCceeeEEEEecCCCCEEEEeCCcc-
Confidence 666777777788999987765 21 1233222 221 5678873 123333333 46778888899999999752
Q ss_pred ceEEe---CCCCCceeccchhhccccccCCCCceEEEccCCcEEEEECCce
Q 044265 165 TVEYY---PPRNGAVSFPFLADVEDKQMDNLYPYVHLLPNGHLFIFANDKA 212 (517)
Q Consensus 165 ~~E~y---P~~~~w~~~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~Gg~~~ 212 (517)
+| ..-++|...+.... .+.++|...+ ..+.+-|++|.+-+
T Consensus 255 ---l~~S~DgGktW~~~~~~~~----~~~n~~~i~f-~~~~~gf~lG~~G~ 297 (302)
T PF14870_consen 255 ---LLVSTDGGKTWQKDRVGEN----VPSNLYRIVF-VNPDKGFVLGQDGV 297 (302)
T ss_dssp ---EEEESSTTSS-EE-GGGTT----SSS---EEEE-EETTEEEEE-STTE
T ss_pred ---EEEeCCCCccceECccccC----CCCceEEEEE-cCCCceEEECCCcE
Confidence 33 22357875433211 2456775444 35688999987654
No 71
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=93.55 E-value=6.6 Score=36.94 Aligned_cols=134 Identities=17% Similarity=0.257 Sum_probs=70.5
Q ss_pred eEEEEECCCCCeEEccccCCCcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCcccc-CcCccceeE
Q 044265 70 HSAILDLQTNQIRPLMILTDTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELV-NGRWYGTDQ 148 (517)
Q Consensus 70 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~-~~R~~~s~~ 148 (517)
.+.+||..+++....-..+...........+++++++++.+ ..+.+||.. +.+-.. .+. ....-.+..
T Consensus 74 ~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---~~i~~~~~~----~~~~~~----~~~~~~~~i~~~~ 142 (289)
T cd00200 74 TIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRD---KTIKVWDVE----TGKCLT----TLRGHTDWVNSVA 142 (289)
T ss_pred eEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCC---CeEEEEECC----CcEEEE----EeccCCCcEEEEE
Confidence 57788887754332222233233334556677888888743 578899986 222221 122 222234455
Q ss_pred EcCCCcEEEEcCCCCCceEEe-CCCCCce-eccchhhccccccCCCCceEEEccCCcEEEEEC--CceEEEeCCCCeEE
Q 044265 149 ILPDGSVIILGGKGANTVEYY-PPRNGAV-SFPFLADVEDKQMDNLYPYVHLLPNGHLFIFAN--DKAVMYDYETNKIA 223 (517)
Q Consensus 149 ~L~dG~v~vvGG~~~~~~E~y-P~~~~w~-~~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~Gg--~~~~~ydp~t~~w~ 223 (517)
..+++++++.|. ....+.+| ....+-. .... . ......+...++++.+++++ ..+.+||..+.+..
T Consensus 143 ~~~~~~~l~~~~-~~~~i~i~d~~~~~~~~~~~~---~-----~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~ 212 (289)
T cd00200 143 FSPDGTFVASSS-QDGTIKLWDLRTGKCVATLTG---H-----TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCL 212 (289)
T ss_pred EcCcCCEEEEEc-CCCcEEEEEccccccceeEec---C-----ccccceEEECCCcCEEEEecCCCcEEEEECCCCcee
Confidence 666677766655 33456677 4322211 1110 0 00111345567886666655 46789999876554
No 72
>PF13854 Kelch_5: Kelch motif
Probab=93.53 E-value=0.071 Score=36.70 Aligned_cols=25 Identities=16% Similarity=0.402 Sum_probs=21.5
Q ss_pred ccCcCccceeEEcCCCcEEEEcCCCC
Q 044265 138 LVNGRWYGTDQILPDGSVIILGGKGA 163 (517)
Q Consensus 138 m~~~R~~~s~~~L~dG~v~vvGG~~~ 163 (517)
++.+|+.|++++. +++||+.||...
T Consensus 1 ~P~~R~~hs~~~~-~~~iyi~GG~~~ 25 (42)
T PF13854_consen 1 IPSPRYGHSAVVV-GNNIYIFGGYSG 25 (42)
T ss_pred CCCCccceEEEEE-CCEEEEEcCccC
Confidence 3678999999998 799999999873
No 73
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=93.38 E-value=3.4 Score=39.71 Aligned_cols=126 Identities=17% Similarity=0.250 Sum_probs=68.6
Q ss_pred eEEEEECCCCCeEEccccCCCcccceee-cCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEec-----cCcccc--Cc
Q 044265 70 HSAILDLQTNQIRPLMILTDTWCSSGQI-LADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVEL-----DDVELV--NG 141 (517)
Q Consensus 70 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~-l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~-----~~~~m~--~~ 141 (517)
...++|.++++.+..-..|...-+..+. -.++.|+ .|+.+ .++++||.+ +.+=... .+.-+. ..
T Consensus 137 ~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qil-sG~ED---GtvRvWd~k----t~k~v~~ie~yk~~~~lRp~~g 208 (325)
T KOG0649|consen 137 VIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQIL-SGAED---GTVRVWDTK----TQKHVSMIEPYKNPNLLRPDWG 208 (325)
T ss_pred EEEEEEecCCEEEEEEcCCcceeeeeeecccCccee-ecCCC---ccEEEEecc----ccceeEEeccccChhhcCcccC
Confidence 4678999999998776666554433322 2345553 45543 468899988 4443322 011122 34
Q ss_pred CccceeEEcCCCcEEEEcCCCCCceEEe--CCCCCceeccchhhccccccCCCCceEEEccCCcEEEEE-CCceEEEeC
Q 044265 142 RWYGTDQILPDGSVIILGGKGANTVEYY--PPRNGAVSFPFLADVEDKQMDNLYPYVHLLPNGHLFIFA-NDKAVMYDY 217 (517)
Q Consensus 142 R~~~s~~~L~dG~v~vvGG~~~~~~E~y--P~~~~w~~~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~G-g~~~~~ydp 217 (517)
||--+.++ |..-+|.||- +...+| +........|.... -+.+...+..|.+.| |+.+..|..
T Consensus 209 ~wigala~--~edWlvCGgG--p~lslwhLrsse~t~vfpipa~----------v~~v~F~~d~vl~~G~g~~v~~~~l 273 (325)
T KOG0649|consen 209 KWIGALAV--NEDWLVCGGG--PKLSLWHLRSSESTCVFPIPAR----------VHLVDFVDDCVLIGGEGNHVQSYTL 273 (325)
T ss_pred ceeEEEec--cCceEEecCC--CceeEEeccCCCceEEEecccc----------eeEeeeecceEEEeccccceeeeee
Confidence 56544433 5678888884 334455 44433333333211 122333466777777 677776654
No 74
>PRK13684 Ycf48-like protein; Provisional
Probab=93.38 E-value=11 Score=38.71 Aligned_cols=195 Identities=12% Similarity=0.121 Sum_probs=93.9
Q ss_pred CCceEeccCccccCcCccceeEEcCCCcEEEEcCCCCCceEEe-CC--CCCceeccchhhccccccCCCCceEEEccCCc
Q 044265 127 LCDWVELDDVELVNGRWYGTDQILPDGSVIILGGKGANTVEYY-PP--RNGAVSFPFLADVEDKQMDNLYPYVHLLPNGH 203 (517)
Q Consensus 127 t~~W~~~~~~~m~~~R~~~s~~~L~dG~v~vvGG~~~~~~E~y-P~--~~~w~~~~~l~~t~~~~~~~~yp~~~~~~~G~ 203 (517)
..+|++.. .....+........+.++.++++|... -+| .. -.+|........ .....+...++|.
T Consensus 118 G~tW~~~~-~~~~~~~~~~~i~~~~~~~~~~~g~~G----~i~~S~DgG~tW~~~~~~~~-------g~~~~i~~~~~g~ 185 (334)
T PRK13684 118 GKNWTRIP-LSEKLPGSPYLITALGPGTAEMATNVG----AIYRTTDGGKNWEALVEDAA-------GVVRNLRRSPDGK 185 (334)
T ss_pred CCCCeEcc-CCcCCCCCceEEEEECCCcceeeeccc----eEEEECCCCCCceeCcCCCc-------ceEEEEEECCCCe
Confidence 57899872 111122222234445456677766432 234 22 356764321100 0111234456776
Q ss_pred EEEEECCceEEE---eCCCCeEEEecCCCCCCCCCCCCCCceeeeecccCccccEEEEEcCCcCCcccccCCCCCCCCce
Q 044265 204 LFIFANDKAVMY---DYETNKIAREYPPLDGGPRNYPSAGSSAMLALEGDFATAVIVVCGGAQFGAFIQRSTDTPAHGSC 280 (517)
Q Consensus 204 iyv~Gg~~~~~y---dp~t~~w~~~~p~~p~~~r~~~~~g~~v~l~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~a~~s~ 280 (517)
++++|.+- .+| |....+|+. ++. +. .+.. -+.+..+ +++++++|... ..
T Consensus 186 ~v~~g~~G-~i~~s~~~gg~tW~~-~~~-~~-~~~l---~~i~~~~------~g~~~~vg~~G--~~------------- 237 (334)
T PRK13684 186 YVAVSSRG-NFYSTWEPGQTAWTP-HQR-NS-SRRL---QSMGFQP------DGNLWMLARGG--QI------------- 237 (334)
T ss_pred EEEEeCCc-eEEEEcCCCCCeEEE-eeC-CC-cccc---eeeeEcC------CCCEEEEecCC--EE-------------
Confidence 66665443 233 334457974 432 21 1111 1122222 67888887532 11
Q ss_pred eEEEecCCCCCceecCCCcc---eeeeeeEEecCCcEEEEcCccCCCCCcccCCCCccccEEEeCCCCCCceeccCCC-C
Q 044265 281 GRIIATSADPTWEMEDMPFG---RIMGDMVMLPTGDVLIINGAQAGTQGFEMASNPCLFPVLYRPTQPAGLRFMTLNP-G 356 (517)
Q Consensus 281 ~~id~~~~~~~W~~~~m~~~---R~~~~~v~lpdG~v~v~GG~~~g~~g~~~~~~~~~~~e~YdP~t~~g~~W~~~~~-~ 356 (517)
++.-.+...+|+...++.. ....+.+..++++++++|.. | .+|- ..+.|++|+.... .
T Consensus 238 -~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~--G--------------~v~~-S~d~G~tW~~~~~~~ 299 (334)
T PRK13684 238 -RFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGN--G--------------TLLV-SKDGGKTWEKDPVGE 299 (334)
T ss_pred -EEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEcCC--C--------------eEEE-eCCCCCCCeECCcCC
Confidence 0100222568986544421 12233345578899988753 2 1221 2355679988653 2
Q ss_pred CccccccceeeecCCCcEEEecCC
Q 044265 357 TIPRMYHSTANLLPDGRVLIAGSN 380 (517)
Q Consensus 357 ~~~R~yhs~a~ll~dG~V~v~GG~ 380 (517)
..+..+.. .+...+++.|++|..
T Consensus 300 ~~~~~~~~-~~~~~~~~~~~~G~~ 322 (334)
T PRK13684 300 EVPSNFYK-IVFLDPEKGFVLGQR 322 (334)
T ss_pred CCCcceEE-EEEeCCCceEEECCC
Confidence 33434443 344578899888874
No 75
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=93.38 E-value=11 Score=38.75 Aligned_cols=148 Identities=14% Similarity=0.198 Sum_probs=74.3
Q ss_pred eEEEEECCCCCeEEccccCC-CcccceeecCCC-cEEEecCCCCCCCeEEEecCCCCCCCCceEeccCcccc-CcCccce
Q 044265 70 HSAILDLQTNQIRPLMILTD-TWCSSGQILADG-TVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELV-NGRWYGT 146 (517)
Q Consensus 70 ~~~~yDp~t~~w~~l~~~~~-~~c~~~~~l~dG-~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~-~~R~~~s 146 (517)
....||.++++++.+..... .-....++.+++ .||++.-.......+..|+...+ +.+.+.+ .... .+..-..
T Consensus 16 ~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~--~g~L~~~--~~~~~~g~~p~~ 91 (345)
T PF10282_consen 16 YVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPD--TGTLTLL--NSVPSGGSSPCH 91 (345)
T ss_dssp EEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETT--TTEEEEE--EEEEESSSCEEE
T ss_pred EEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCC--cceeEEe--eeeccCCCCcEE
Confidence 46677899999987664211 111223333454 56666543212345656654421 3566666 3444 4444444
Q ss_pred eEEcCCCcEEEEcCCCCCceEEeCC-CCCce-ec-cchh----hccccccCCCCceE-EEccCCcEEEE---ECCceEEE
Q 044265 147 DQILPDGSVIILGGKGANTVEYYPP-RNGAV-SF-PFLA----DVEDKQMDNLYPYV-HLLPNGHLFIF---ANDKAVMY 215 (517)
Q Consensus 147 ~~~L~dG~v~vvGG~~~~~~E~yP~-~~~w~-~~-~~l~----~t~~~~~~~~yp~~-~~~~~G~iyv~---Gg~~~~~y 215 (517)
.+.-+||+.+++.-....++.+|+. .++.. .. .... .+.........||. ...+||+.+++ |...+.+|
T Consensus 92 i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~ 171 (345)
T PF10282_consen 92 IAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVY 171 (345)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred EEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEE
Confidence 5666788887776555667888832 32322 11 0100 00000011234443 44578874444 45678888
Q ss_pred eCCCCe
Q 044265 216 DYETNK 221 (517)
Q Consensus 216 dp~t~~ 221 (517)
+...+.
T Consensus 172 ~~~~~~ 177 (345)
T PF10282_consen 172 DIDDDT 177 (345)
T ss_dssp EE-TTS
T ss_pred EEeCCC
Confidence 887655
No 76
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=93.19 E-value=0.63 Score=47.23 Aligned_cols=115 Identities=17% Similarity=0.253 Sum_probs=72.3
Q ss_pred eecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCcccc-CcCccceeEEcCCCcEEEEcCCCCCceEEe-CCCC
Q 044265 96 QILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELV-NGRWYGTDQILPDGSVIILGGKGANTVEYY-PPRN 173 (517)
Q Consensus 96 ~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~-~~R~~~s~~~L~dG~v~vvGG~~~~~~E~y-P~~~ 173 (517)
.+.++|+.++.|+- ..++++||+. +.+ +. .-+. ...|-.+++.-|||+.++.|- ...++.+| |+++
T Consensus 122 ~fsp~g~~l~tGsG---D~TvR~WD~~----TeT--p~--~t~KgH~~WVlcvawsPDgk~iASG~-~dg~I~lwdpktg 189 (480)
T KOG0271|consen 122 QFSPTGSRLVTGSG---DTTVRLWDLD----TET--PL--FTCKGHKNWVLCVAWSPDGKKIASGS-KDGSIRLWDPKTG 189 (480)
T ss_pred EecCCCceEEecCC---CceEEeeccC----CCC--cc--eeecCCccEEEEEEECCCcchhhccc-cCCeEEEecCCCC
Confidence 45678999999874 3789999998 333 11 1222 456888999999999977554 44678888 8865
Q ss_pred Cceeccchhhccc-cccCCCCceEEEccCCcEEEEEC--CceEEEeCCCCeEEE
Q 044265 174 GAVSFPFLADVED-KQMDNLYPYVHLLPNGHLFIFAN--DKAVMYDYETNKIAR 224 (517)
Q Consensus 174 ~w~~~~~l~~t~~-~~~~~~yp~~~~~~~G~iyv~Gg--~~~~~ydp~t~~w~~ 224 (517)
+-.-.++ ...+- .....+.| .++.+..+.++.++ +++.+||...++-..
T Consensus 190 ~~~g~~l-~gH~K~It~Lawep-~hl~p~~r~las~skDg~vrIWd~~~~~~~~ 241 (480)
T KOG0271|consen 190 QQIGRAL-RGHKKWITALAWEP-LHLVPPCRRLASSSKDGSVRIWDTKLGTCVR 241 (480)
T ss_pred Ccccccc-cCcccceeEEeecc-cccCCCccceecccCCCCEEEEEccCceEEE
Confidence 4331111 10000 00011222 55667778777765 468899998887664
No 77
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=93.17 E-value=4.4 Score=39.12 Aligned_cols=142 Identities=18% Similarity=0.218 Sum_probs=77.0
Q ss_pred EEEECCCCCeEEcccc-----CCCcccceeecCCCcEEEecCCCC---CC--CeEEEecCCCCCCCCceEeccCccccCc
Q 044265 72 AILDLQTNQIRPLMIL-----TDTWCSSGQILADGTVLQTGGDLD---GY--KKIRKFSPCEANGLCDWVELDDVELVNG 141 (517)
Q Consensus 72 ~~yDp~t~~w~~l~~~-----~~~~c~~~~~l~dG~l~v~GG~~~---g~--~~v~~ydp~~~~~t~~W~~~~~~~m~~~ 141 (517)
.++|+.+++++.+... ...++...++.++|++|+.--... .. ..+.++++. .+.... ...|..
T Consensus 63 ~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-----~~~~~~-~~~~~~- 135 (246)
T PF08450_consen 63 AVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-----GKVTVV-ADGLGF- 135 (246)
T ss_dssp EEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-----SEEEEE-EEEESS-
T ss_pred EEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-----CeEEEE-ecCccc-
Confidence 4569999999887654 445677888999999999642211 11 457888876 233332 122332
Q ss_pred CccceeEEcCCCcEEEEcCCCCCceEEe-CCCCC--ceeccchhhccccccCCCCce-EEEccCCcEEEE--ECCceEEE
Q 044265 142 RWYGTDQILPDGSVIILGGKGANTVEYY-PPRNG--AVSFPFLADVEDKQMDNLYPY-VHLLPNGHLFIF--ANDKAVMY 215 (517)
Q Consensus 142 R~~~s~~~L~dG~v~vvGG~~~~~~E~y-P~~~~--w~~~~~l~~t~~~~~~~~yp~-~~~~~~G~iyv~--Gg~~~~~y 215 (517)
-.+.+.-+||+.+.+.-.....+..| ....+ +......... .....+|- +++-.+|+||+. ++..+.+|
T Consensus 136 --pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~---~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~ 210 (246)
T PF08450_consen 136 --PNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDF---PGGPGYPDGLAVDSDGNLWVADWGGGRIVVF 210 (246)
T ss_dssp --EEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE----SSSSCEEEEEEEBTTS-EEEEEETTTEEEEE
T ss_pred --ccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEc---CCCCcCCCcceEcCCCCEEEEEcCCCEEEEE
Confidence 34677778998655543333445555 33222 2110000000 00011233 444568999998 57889999
Q ss_pred eCCCCeEEEec
Q 044265 216 DYETNKIAREY 226 (517)
Q Consensus 216 dp~t~~w~~~~ 226 (517)
||. ++-...+
T Consensus 211 ~p~-G~~~~~i 220 (246)
T PF08450_consen 211 DPD-GKLLREI 220 (246)
T ss_dssp ETT-SCEEEEE
T ss_pred CCC-ccEEEEE
Confidence 999 4433333
No 78
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=93.16 E-value=2 Score=41.43 Aligned_cols=136 Identities=18% Similarity=0.200 Sum_probs=77.1
Q ss_pred cceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCcccc---CcCccceeEEcCCCcEEEEcCCCCCceEEe
Q 044265 93 SSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELV---NGRWYGTDQILPDGSVIILGGKGANTVEYY 169 (517)
Q Consensus 93 ~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~---~~R~~~s~~~L~dG~v~vvGG~~~~~~E~y 169 (517)
.+.++.-|..-+++||.. +-+++||.. .-+ . .+|. .++.--.+..+...+-++.. .+..++.+|
T Consensus 104 k~~af~~ds~~lltgg~e---kllrvfdln----~p~---A--pp~E~~ghtg~Ir~v~wc~eD~~iLSS-add~tVRLW 170 (334)
T KOG0278|consen 104 KAVAFSQDSNYLLTGGQE---KLLRVFDLN----RPK---A--PPKEISGHTGGIRTVLWCHEDKCILSS-ADDKTVRLW 170 (334)
T ss_pred eeEEecccchhhhccchH---HHhhhhhcc----CCC---C--CchhhcCCCCcceeEEEeccCceEEee-ccCCceEEE
Confidence 345566788888899875 567889875 211 1 1222 22333344444444444443 566788888
Q ss_pred -CCCCCce-eccchhhccccccCCCCceEEEccCCcEEEEE-CCceEEEeCCCCeEEEecCCCCCCCCCCCCCCceeeee
Q 044265 170 -PPRNGAV-SFPFLADVEDKQMDNLYPYVHLLPNGHLFIFA-NDKAVMYDYETNKIAREYPPLDGGPRNYPSAGSSAMLA 246 (517)
Q Consensus 170 -P~~~~w~-~~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~G-g~~~~~ydp~t~~w~~~~p~~p~~~r~~~~~g~~v~l~ 246 (517)
-.+.+-. .+.+.... -.+-+..||+|..+. |.++..||+++-.-.+. -.||- +- .++.+-|
T Consensus 171 D~rTgt~v~sL~~~s~V---------tSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs-~k~P~---nV---~SASL~P 234 (334)
T KOG0278|consen 171 DHRTGTEVQSLEFNSPV---------TSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKS-YKMPC---NV---ESASLHP 234 (334)
T ss_pred EeccCcEEEEEecCCCC---------cceeeccCCCEEEEecCceeEEeccccccceee-ccCcc---cc---ccccccC
Confidence 4443322 11110000 124456799999877 67888999988655432 23442 11 2344655
Q ss_pred cccCccccEEEEEcCCc
Q 044265 247 LEGDFATAVIVVCGGAQ 263 (517)
Q Consensus 247 ~~~~~~~gkI~v~GG~~ 263 (517)
+..+|||||.+
T Consensus 235 ------~k~~fVaGged 245 (334)
T KOG0278|consen 235 ------KKEFFVAGGED 245 (334)
T ss_pred ------CCceEEecCcc
Confidence 66999999987
No 79
>PTZ00421 coronin; Provisional
Probab=92.76 E-value=6.3 Score=42.66 Aligned_cols=140 Identities=11% Similarity=0.076 Sum_probs=72.3
Q ss_pred eEEEEECCCCCeEEccccCCCcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCce-EeccCccccCcCccceeE
Q 044265 70 HSAILDLQTNQIRPLMILTDTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDW-VELDDVELVNGRWYGTDQ 148 (517)
Q Consensus 70 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W-~~~~~~~m~~~R~~~s~~ 148 (517)
.+.+||..+++-...-..+.....+....+||.++++|+.+ +.+++||+. +.+- ..+ ..........+.
T Consensus 149 tVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~D---g~IrIwD~r----sg~~v~tl---~~H~~~~~~~~~ 218 (493)
T PTZ00421 149 VVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKD---KKLNIIDPR----DGTIVSSV---EAHASAKSQRCL 218 (493)
T ss_pred EEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCC---CEEEEEECC----CCcEEEEE---ecCCCCcceEEE
Confidence 58899998876443322333334445567899999999874 689999998 3332 122 111111112233
Q ss_pred EcCCCcEEEEcCCC---CCceEEe-CCCCCceeccchhhccccccCCCCceEEEccCCcEEEEEC---CceEEEeCCCCe
Q 044265 149 ILPDGSVIILGGKG---ANTVEYY-PPRNGAVSFPFLADVEDKQMDNLYPYVHLLPNGHLFIFAN---DKAVMYDYETNK 221 (517)
Q Consensus 149 ~L~dG~v~vvGG~~---~~~~E~y-P~~~~w~~~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~Gg---~~~~~ydp~t~~ 221 (517)
..+++..++..|.+ ...+.+| ....... .... ..+. ...-...+.-+++++++.|| ..+.+||..+++
T Consensus 219 w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p-~~~~--~~d~--~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~ 293 (493)
T PTZ00421 219 WAKRKDLIITLGCSKSQQRQIMLWDTRKMASP-YSTV--DLDQ--SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER 293 (493)
T ss_pred EcCCCCeEEEEecCCCCCCeEEEEeCCCCCCc-eeEe--ccCC--CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc
Confidence 44455455554432 3567777 4321110 0000 0000 00000112345787776665 357889998877
Q ss_pred EEE
Q 044265 222 IAR 224 (517)
Q Consensus 222 w~~ 224 (517)
...
T Consensus 294 ~~~ 296 (493)
T PTZ00421 294 LTF 296 (493)
T ss_pred eEE
Confidence 653
No 80
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=92.50 E-value=14 Score=37.84 Aligned_cols=236 Identities=15% Similarity=0.192 Sum_probs=110.7
Q ss_pred EEEEECCCCCeEEccccC---CCcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEec---------cCcc-
Q 044265 71 SAILDLQTNQIRPLMILT---DTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVEL---------DDVE- 137 (517)
Q Consensus 71 ~~~yDp~t~~w~~l~~~~---~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~---------~~~~- 137 (517)
+...|+.+++.+.+.... ..-|+ .++.++|+.+++.-+. ..++.+|+...+ .+-.+. .+.+
T Consensus 66 ~~~i~~~~g~L~~~~~~~~~g~~p~~-i~~~~~g~~l~vany~--~g~v~v~~l~~~---g~l~~~~~~~~~~g~g~~~~ 139 (345)
T PF10282_consen 66 SYRIDPDTGTLTLLNSVPSGGSSPCH-IAVDPDGRFLYVANYG--GGSVSVFPLDDD---GSLGEVVQTVRHEGSGPNPD 139 (345)
T ss_dssp EEEEETTTTEEEEEEEEEESSSCEEE-EEECTTSSEEEEEETT--TTEEEEEEECTT---SEEEEEEEEEESEEEESSTT
T ss_pred EEEECCCcceeEEeeeeccCCCCcEE-EEEecCCCEEEEEEcc--CCeEEEEEccCC---cccceeeeecccCCCCCccc
Confidence 445566667887766432 22342 3455788877765443 246777776521 111111 0000
Q ss_pred ccCcCccceeEEcCCCcEEEEcCCCCCceEEe-CCCCC--ceeccchhhccccccCCCCc-eEEEccCCc-EEEEEC--C
Q 044265 138 LVNGRWYGTDQILPDGSVIILGGKGANTVEYY-PPRNG--AVSFPFLADVEDKQMDNLYP-YVHLLPNGH-LFIFAN--D 210 (517)
Q Consensus 138 m~~~R~~~s~~~L~dG~v~vvGG~~~~~~E~y-P~~~~--w~~~~~l~~t~~~~~~~~yp-~~~~~~~G~-iyv~Gg--~ 210 (517)
-+..-.-|.+...+||+.+.+--.....+.+| -..+. ......+. .+...-| |+.+.+||+ +|++.. +
T Consensus 140 rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~-----~~~G~GPRh~~f~pdg~~~Yv~~e~s~ 214 (345)
T PF10282_consen 140 RQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIK-----VPPGSGPRHLAFSPDGKYAYVVNELSN 214 (345)
T ss_dssp TTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEE-----CSTTSSEEEEEE-TTSSEEEEEETTTT
T ss_pred ccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccc-----cccCCCCcEEEEcCCcCEEEEecCCCC
Confidence 12223356778888988666654444567777 32222 22111110 1112234 456667876 666653 4
Q ss_pred ceEEEeCC--CCeEE--EecCCCCCCCCCCCCCCceeeeecccCccccEEEEEcCCcCCcccccCCCCCCCCceeEEEec
Q 044265 211 KAVMYDYE--TNKIA--REYPPLDGGPRNYPSAGSSAMLALEGDFATAVIVVCGGAQFGAFIQRSTDTPAHGSCGRIIAT 286 (517)
Q Consensus 211 ~~~~ydp~--t~~w~--~~~p~~p~~~r~~~~~g~~v~l~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~a~~s~~~id~~ 286 (517)
.+.+|+.. ++++. ..++.+|....... .++.+.+.. +++.+.+.-.. .+++..|++.
T Consensus 215 ~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~i~isp-----dg~~lyvsnr~-------------~~sI~vf~~d 275 (345)
T PF10282_consen 215 TVSVFDYDPSDGSLTEIQTISTLPEGFTGEN-APAEIAISP-----DGRFLYVSNRG-------------SNSISVFDLD 275 (345)
T ss_dssp EEEEEEEETTTTEEEEEEEEESCETTSCSSS-SEEEEEE-T-----TSSEEEEEECT-------------TTEEEEEEEC
T ss_pred cEEEEeecccCCceeEEEEeeeccccccccC-CceeEEEec-----CCCEEEEEecc-------------CCEEEEEEEe
Confidence 56666555 55543 23444543211110 123333322 55543333221 2334455553
Q ss_pred CCCCCceec-----CCCcceeeeeeEEecCCcEEEEcCccCCCCCcccCCCCccccEEE--eCCCCCCceeccCC
Q 044265 287 SADPTWEME-----DMPFGRIMGDMVMLPTGDVLIINGAQAGTQGFEMASNPCLFPVLY--RPTQPAGLRFMTLN 354 (517)
Q Consensus 287 ~~~~~W~~~-----~m~~~R~~~~~v~lpdG~v~v~GG~~~g~~g~~~~~~~~~~~e~Y--dP~t~~g~~W~~~~ 354 (517)
..+.+-+.. .-..||.+ .+-+||+.+++.....+ .+.+| |+++. +++.+.
T Consensus 276 ~~~g~l~~~~~~~~~G~~Pr~~---~~s~~g~~l~Va~~~s~------------~v~vf~~d~~tG---~l~~~~ 332 (345)
T PF10282_consen 276 PATGTLTLVQTVPTGGKFPRHF---AFSPDGRYLYVANQDSN------------TVSVFDIDPDTG---KLTPVG 332 (345)
T ss_dssp TTTTTEEEEEEEEESSSSEEEE---EE-TTSSEEEEEETTTT------------EEEEEEEETTTT---EEEEEE
T ss_pred cCCCceEEEEEEeCCCCCccEE---EEeCCCCEEEEEecCCC------------eEEEEEEeCCCC---cEEEec
Confidence 222233221 23446765 34589998777654311 24555 67777 776543
No 81
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=92.49 E-value=3.2 Score=40.80 Aligned_cols=180 Identities=17% Similarity=0.291 Sum_probs=92.1
Q ss_pred ccccCcCccceeEEc-CCCc--EEEEcCCCCCceEEe-CC----CCCceec-cchhhccccccCCCCceEEEccCCcEEE
Q 044265 136 VELVNGRWYGTDQIL-PDGS--VIILGGKGANTVEYY-PP----RNGAVSF-PFLADVEDKQMDNLYPYVHLLPNGHLFI 206 (517)
Q Consensus 136 ~~m~~~R~~~s~~~L-~dG~--v~vvGG~~~~~~E~y-P~----~~~w~~~-~~l~~t~~~~~~~~yp~~~~~~~G~iyv 206 (517)
.+.+.+|+.|++-++ +.|| +.++||+. | |. +.+|... .- -| .
T Consensus 82 GdvP~aRYGHt~~vV~SrGKta~VlFGGRS------Y~P~~qRTTenWNsVvDC------------~P--------~--- 132 (337)
T PF03089_consen 82 GDVPEARYGHTINVVHSRGKTACVLFGGRS------YMPPGQRTTENWNSVVDC------------PP--------Q--- 132 (337)
T ss_pred CCCCcccccceEEEEEECCcEEEEEECCcc------cCCccccchhhcceeccC------------CC--------e---
Confidence 578999999988655 3454 46678864 3 33 2445421 11 11 1
Q ss_pred EECCceEEEeCCCCeEE-EecCCCCCCCCCCCCCCceeeeecccCccccEEEEEcCCcCCcccccCCCCCCCCceeEEEe
Q 044265 207 FANDKAVMYDYETNKIA-REYPPLDGGPRNYPSAGSSAMLALEGDFATAVIVVCGGAQFGAFIQRSTDTPAHGSCGRIIA 285 (517)
Q Consensus 207 ~Gg~~~~~ydp~t~~w~-~~~p~~p~~~r~~~~~g~~v~l~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~a~~s~~~id~ 285 (517)
+.++|.+-+-.+ ..+|.+..+ ..++ .++. .+..||++||..-.... ......++.+
T Consensus 133 -----VfLiDleFGC~tah~lpEl~dG-~SFH---vsla-------r~D~VYilGGHsl~sd~-------Rpp~l~rlkV 189 (337)
T PF03089_consen 133 -----VFLIDLEFGCCTAHTLPELQDG-QSFH---VSLA-------RNDCVYILGGHSLESDS-------RPPRLYRLKV 189 (337)
T ss_pred -----EEEEeccccccccccchhhcCC-eEEE---EEEe-------cCceEEEEccEEccCCC-------CCCcEEEEEE
Confidence 336788777654 345555432 2332 2221 38999999998522111 1122333332
Q ss_pred c--CCCCCceecCCCcceeeeeeEEec--CCcEEEEcCccCCCCC------cccCCCCccccEEEeCCCCCCceeccCCC
Q 044265 286 T--SADPTWEMEDMPFGRIMGDMVMLP--TGDVLIINGAQAGTQG------FEMASNPCLFPVLYRPTQPAGLRFMTLNP 355 (517)
Q Consensus 286 ~--~~~~~W~~~~m~~~R~~~~~v~lp--dG~v~v~GG~~~g~~g------~~~~~~~~~~~e~YdP~t~~g~~W~~~~~ 355 (517)
. -..+.-+-.-+..+-....|++.+ ..+.+|+||++...+- ...+++ .+++=.-+++ +|+ ..
T Consensus 190 dLllGSP~vsC~vl~~glSisSAIvt~~~~~e~iIlGGY~sdsQKRm~C~~V~Ldd~---~I~ie~~E~P---~Wt--~d 261 (337)
T PF03089_consen 190 DLLLGSPAVSCTVLQGGLSISSAIVTQTGPHEYIILGGYQSDSQKRMECNTVSLDDD---GIHIEEREPP---EWT--GD 261 (337)
T ss_pred eecCCCceeEEEECCCCceEeeeeEeecCCCceEEEecccccceeeeeeeEEEEeCC---ceEeccCCCC---CCC--CC
Confidence 2 112211111333444444444433 3578899998743220 000111 2344445566 897 45
Q ss_pred CCccccccceeeecCCCcEEEe
Q 044265 356 GTIPRMYHSTANLLPDGRVLIA 377 (517)
Q Consensus 356 ~~~~R~yhs~a~ll~dG~V~v~ 377 (517)
....|.+.+.. +-.|.+|++
T Consensus 262 I~hSrtWFGgs--~G~G~~Li~ 281 (337)
T PF03089_consen 262 IKHSRTWFGGS--MGKGSALIG 281 (337)
T ss_pred cCcCccccccc--cCCceEEEE
Confidence 67778777655 357777664
No 82
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.14 E-value=19 Score=38.53 Aligned_cols=234 Identities=17% Similarity=0.163 Sum_probs=127.4
Q ss_pred eeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCce-EeccCccc-cCcCccceeEEcCCCcEEEEcCCCCCceEEe-CC
Q 044265 95 GQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDW-VELDDVEL-VNGRWYGTDQILPDGSVIILGGKGANTVEYY-PP 171 (517)
Q Consensus 95 ~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W-~~~~~~~m-~~~R~~~s~~~L~dG~v~vvGG~~~~~~E~y-P~ 171 (517)
..+.+||+.++.+..+ +.+.+++... .+ ... ..+ ...++-...+.-+||+ |++.|....++.+| ..
T Consensus 165 ~~fs~~g~~l~~~~~~---~~i~~~~~~~-----~~~~~~--~~l~~h~~~v~~~~fs~d~~-~l~s~s~D~tiriwd~~ 233 (456)
T KOG0266|consen 165 VDFSPDGRALAAASSD---GLIRIWKLEG-----IKSNLL--RELSGHTRGVSDVAFSPDGS-YLLSGSDDKTLRIWDLK 233 (456)
T ss_pred EEEcCCCCeEEEccCC---CcEEEeeccc-----ccchhh--ccccccccceeeeEECCCCc-EEEEecCCceEEEeecc
Confidence 3457899997777553 5677777741 22 122 223 3445666777888999 45666666788888 42
Q ss_pred CCCceeccchhhccccccCCCCceEEEccCCcEEEEEC--CceEEEeCCCCeEEEecCCCCCCCCCCCCCCceeeeeccc
Q 044265 172 RNGAVSFPFLADVEDKQMDNLYPYVHLLPNGHLFIFAN--DKAVMYDYETNKIAREYPPLDGGPRNYPSAGSSAMLALEG 249 (517)
Q Consensus 172 ~~~w~~~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~Gg--~~~~~ydp~t~~w~~~~p~~p~~~r~~~~~g~~v~l~~~~ 249 (517)
.+.-...- +.. +....+ .+...++|++++.|+ ..+.+||.++.+-.+.+ ++. ..+ -+++.++.
T Consensus 234 ~~~~~~~~-l~g----H~~~v~-~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l---~~h--s~~--is~~~f~~-- 298 (456)
T KOG0266|consen 234 DDGRNLKT-LKG----HSTYVT-SVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKL---KGH--SDG--ISGLAFSP-- 298 (456)
T ss_pred CCCeEEEE-ecC----CCCceE-EEEecCCCCEEEEecCCCcEEEEeccCCeEEEee---ecc--CCc--eEEEEECC--
Confidence 22111111 111 111112 345567899999987 46899999997765544 221 111 13334443
Q ss_pred CccccEEEEEcCCcCCcccccCCCCCCCCceeEEEecCCCCCce-----ec-CCCcc-eeeeeeEEecCCcEEEEcCccC
Q 044265 250 DFATAVIVVCGGAQFGAFIQRSTDTPAHGSCGRIIATSADPTWE-----ME-DMPFG-RIMGDMVMLPTGDVLIINGAQA 322 (517)
Q Consensus 250 ~~~~gkI~v~GG~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W~-----~~-~m~~~-R~~~~~v~lpdG~v~v~GG~~~ 322 (517)
++.+++.+..+ + .+..+|+. +|. .. ....+ ..... .--+||+.++++..+.
T Consensus 299 ---d~~~l~s~s~d-~-------------~i~vwd~~----~~~~~~~~~~~~~~~~~~~~~~-~fsp~~~~ll~~~~d~ 356 (456)
T KOG0266|consen 299 ---DGNLLVSASYD-G-------------TIRVWDLE----TGSKLCLKLLSGAENSAPVTSV-QFSPNGKYLLSASLDR 356 (456)
T ss_pred ---CCCEEEEcCCC-c-------------cEEEEECC----CCceeeeecccCCCCCCceeEE-EECCCCcEEEEecCCC
Confidence 78888888654 2 12344433 222 11 12222 12222 2238999888876541
Q ss_pred CCCCcccCCCCccccEEEeCCCCC-CceeccCCCCCccccccceeeecCCCcEEEecCCCccccccCCCCCCceeeEEEe
Q 044265 323 GTQGFEMASNPCLFPVLYRPTQPA-GLRFMTLNPGTIPRMYHSTANLLPDGRVLIAGSNPHYFYKFNAEFPTELRIEAFS 401 (517)
Q Consensus 323 g~~g~~~~~~~~~~~e~YdP~t~~-g~~W~~~~~~~~~R~yhs~a~ll~dG~V~v~GG~~~~~~~~~~~~~~~~~vE~y~ 401 (517)
.+-+||..... -.+|+..... .|...+ .+..++|+.++.|+.+. .|++|+
T Consensus 357 -------------~~~~w~l~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~i~sg~~d~-------------~v~~~~ 407 (456)
T KOG0266|consen 357 -------------TLKLWDLRSGKSVGTYTGHSNL--VRCIFS-PTLSTGGKLIYSGSEDG-------------SVYVWD 407 (456)
T ss_pred -------------eEEEEEccCCcceeeecccCCc--ceeEec-ccccCCCCeEEEEeCCc-------------eEEEEe
Confidence 24556655431 1133322222 133332 34468999999998753 478888
Q ss_pred CCcc
Q 044265 402 PEYL 405 (517)
Q Consensus 402 P~yl 405 (517)
+..+
T Consensus 408 ~~s~ 411 (456)
T KOG0266|consen 408 SSSG 411 (456)
T ss_pred CCcc
Confidence 8864
No 83
>PRK13684 Ycf48-like protein; Provisional
Probab=92.03 E-value=12 Score=38.28 Aligned_cols=119 Identities=15% Similarity=0.143 Sum_probs=64.8
Q ss_pred ECCCCCeEEccccCCCcccceeecCCCcEEEecCCCCCCCeEEEec-CCCCCCCCceEeccCccccCc-CccceeEEcCC
Q 044265 75 DLQTNQIRPLMILTDTWCSSGQILADGTVLQTGGDLDGYKKIRKFS-PCEANGLCDWVELDDVELVNG-RWYGTDQILPD 152 (517)
Q Consensus 75 Dp~t~~w~~l~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~yd-p~~~~~t~~W~~~~~~~m~~~-R~~~s~~~L~d 152 (517)
|....+|+++.........+..+..+|+++++|... ..++. .. ...+|+... .+.... ....+++..++
T Consensus 200 ~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G-----~~~~~s~d---~G~sW~~~~-~~~~~~~~~l~~v~~~~~ 270 (334)
T PRK13684 200 EPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGG-----QIRFNDPD---DLESWSKPI-IPEITNGYGYLDLAYRTP 270 (334)
T ss_pred CCCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCC-----EEEEccCC---CCCcccccc-CCccccccceeeEEEcCC
Confidence 444467988866555555556677899999987532 22232 22 156898651 111111 12344566668
Q ss_pred CcEEEEcCCCCCceEEe---CCCCCceeccchhhccccccCCCCceEEEccCCcEEEEECCc
Q 044265 153 GSVIILGGKGANTVEYY---PPRNGAVSFPFLADVEDKQMDNLYPYVHLLPNGHLFIFANDK 211 (517)
Q Consensus 153 G~v~vvGG~~~~~~E~y---P~~~~w~~~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~Gg~~ 211 (517)
++++++|... .+| ....+|...+.... .+.++| ......++++|++|..-
T Consensus 271 ~~~~~~G~~G----~v~~S~d~G~tW~~~~~~~~----~~~~~~-~~~~~~~~~~~~~G~~G 323 (334)
T PRK13684 271 GEIWAGGGNG----TLLVSKDGGKTWEKDPVGEE----VPSNFY-KIVFLDPEKGFVLGQRG 323 (334)
T ss_pred CCEEEEcCCC----eEEEeCCCCCCCeECCcCCC----CCcceE-EEEEeCCCceEEECCCc
Confidence 8898887643 122 22357875432111 112233 34445678888888753
No 84
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=91.67 E-value=0.24 Score=51.89 Aligned_cols=114 Identities=18% Similarity=0.166 Sum_probs=74.3
Q ss_pred cccceeEEEEeeCC--EEEEEeccCCCCCCcccCCCcccccccccccccCCcceEEEEECCCCCeEEccccC----CCcc
Q 044265 19 AGISSMHTAVTRFN--TVVLLDRTNIGPSRKMLGRGRCRLDRNDRALKRDCYAHSAILDLQTNQIRPLMILT----DTWC 92 (517)
Q Consensus 19 ~~~~~~h~~ll~~g--kv~~~gg~~~g~~~~~~~~G~~~~~~~~~~~~~d~~~~~~~yDp~t~~w~~l~~~~----~~~c 92 (517)
...+..|..|..++ =||++||.+ |-. -.+....|....+.|+.....+ .+-|
T Consensus 258 p~~RgGHQMV~~~~~~CiYLYGGWd-G~~---------------------~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsC 315 (723)
T KOG2437|consen 258 PGMRGGHQMVIDVQTECVYLYGGWD-GTQ---------------------DLADFWAYSVKENQWTCINRDTEGPGARSC 315 (723)
T ss_pred ccccCcceEEEeCCCcEEEEecCcc-cch---------------------hHHHHHhhcCCcceeEEeecCCCCCcchhh
Confidence 35666787776554 799999986 311 1234567888889999876422 3346
Q ss_pred cceee-cCCCcEEEecCCCC--------CCCeEEEecCCCCCCCCceEeccCccccCc-------CccceeEEcCCCc--
Q 044265 93 SSGQI-LADGTVLQTGGDLD--------GYKKIRKFSPCEANGLCDWVELDDVELVNG-------RWYGTDQILPDGS-- 154 (517)
Q Consensus 93 ~~~~~-l~dG~l~v~GG~~~--------g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~-------R~~~s~~~L~dG~-- 154 (517)
+-.+. ....++|..|-+.+ +...++.||-. ++.|.-+ +|... -.-|.+++. ..|
T Consensus 316 HRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~----~~~W~~l---s~dt~~dGGP~~vfDHqM~Vd-~~k~~ 387 (723)
T KOG2437|consen 316 HRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDID----TNTWMLL---SEDTAADGGPKLVFDHQMCVD-SEKHM 387 (723)
T ss_pred hhhhhhhhHhHHhhhhhccccccccccccccceEEEecC----CceeEEe---cccccccCCcceeecceeeEe-cCcce
Confidence 54322 12348999996542 34578999998 8999876 23322 345777777 445
Q ss_pred EEEEcCCC
Q 044265 155 VIILGGKG 162 (517)
Q Consensus 155 v~vvGG~~ 162 (517)
|||.||+.
T Consensus 388 iyVfGGr~ 395 (723)
T KOG2437|consen 388 IYVFGGRI 395 (723)
T ss_pred EEEecCee
Confidence 99999974
No 85
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=91.03 E-value=21 Score=36.84 Aligned_cols=107 Identities=17% Similarity=0.124 Sum_probs=54.4
Q ss_pred ceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccCcCccceeEEcCCCcEEEEcCCCCCceEEe-CCC
Q 044265 94 SGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVNGRWYGTDQILPDGSVIILGGKGANTVEYY-PPR 172 (517)
Q Consensus 94 ~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~~s~~~L~dG~v~vvGG~~~~~~E~y-P~~ 172 (517)
...++.++++|+.... ..+..||+.++ ...|... +.. +...+ .++.++++|+ |..+ ..+..+ +.+
T Consensus 59 ~~p~v~~~~v~v~~~~----g~v~a~d~~tG--~~~W~~~----~~~-~~~~~-p~v~~~~v~v-~~~~-g~l~ald~~t 124 (377)
T TIGR03300 59 LQPAVAGGKVYAADAD----GTVVALDAETG--KRLWRVD----LDE-RLSGG-VGADGGLVFV-GTEK-GEVIALDAED 124 (377)
T ss_pred cceEEECCEEEEECCC----CeEEEEEccCC--cEeeeec----CCC-Ccccc-eEEcCCEEEE-EcCC-CEEEEEECCC
Confidence 3445567777776543 46889998753 5679753 221 22222 3344667765 4433 233444 433
Q ss_pred C--CceeccchhhccccccCCCCceEEEccCCcEEEEEC-CceEEEeCCCCe--EEE
Q 044265 173 N--GAVSFPFLADVEDKQMDNLYPYVHLLPNGHLFIFAN-DKAVMYDYETNK--IAR 224 (517)
Q Consensus 173 ~--~w~~~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~Gg-~~~~~ydp~t~~--w~~ 224 (517)
. .|... . ... . + ..-++.++++|+..+ ..+.++|+++++ |..
T Consensus 125 G~~~W~~~-~-~~~-----~--~-~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~ 171 (377)
T TIGR03300 125 GKELWRAK-L-SSE-----V--L-SPPLVANGLVVVRTNDGRLTALDAATGERLWTY 171 (377)
T ss_pred CcEeeeec-c-Cce-----e--e-cCCEEECCEEEEECCCCeEEEEEcCCCceeeEE
Confidence 2 35421 1 000 0 0 011224677777543 457889998764 653
No 86
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=91.01 E-value=6.4 Score=37.67 Aligned_cols=153 Identities=12% Similarity=0.108 Sum_probs=78.3
Q ss_pred CCcEEEEECCceEEEeCCCCeEEEecCCCCCCCCCCCCCCceeeeecccCccccEEEEEcCCcCCcccccCCCCCCCCce
Q 044265 201 NGHLFIFANDKAVMYDYETNKIAREYPPLDGGPRNYPSAGSSAMLALEGDFATAVIVVCGGAQFGAFIQRSTDTPAHGSC 280 (517)
Q Consensus 201 ~G~iyv~Gg~~~~~ydp~t~~w~~~~p~~p~~~r~~~~~g~~v~l~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~a~~s~ 280 (517)
||-|.+.......++||.|++|. .+|+.+. .+.++. .....+..+....+=||+.+...... .....+
T Consensus 5 nGLlc~~~~~~~~V~NP~T~~~~-~LP~~~~-~~~~~~-~~~~~~G~d~~~~~YKVv~~~~~~~~---------~~~~~~ 72 (230)
T TIGR01640 5 DGLICFSYGKRLVVWNPSTGQSR-WLPTPKS-RRSNKE-SDTYFLGYDPIEKQYKVLCFSDRSGN---------RNQSEH 72 (230)
T ss_pred ceEEEEecCCcEEEECCCCCCEE-ecCCCCC-cccccc-cceEEEeecccCCcEEEEEEEeecCC---------CCCccE
Confidence 56665544456779999999997 6876442 112221 10111221111113366666432100 113467
Q ss_pred eEEEecCCCCCceec-CCC-cceeeeeeEEecCCcEEEEcCccCCCCCcccCCCCccccEEEeCCCCCCceeccCCCCCc
Q 044265 281 GRIIATSADPTWEME-DMP-FGRIMGDMVMLPTGDVLIINGAQAGTQGFEMASNPCLFPVLYRPTQPAGLRFMTLNPGTI 358 (517)
Q Consensus 281 ~~id~~~~~~~W~~~-~m~-~~R~~~~~v~lpdG~v~v~GG~~~g~~g~~~~~~~~~~~e~YdP~t~~g~~W~~~~~~~~ 358 (517)
+.|++. ++.|+.. ..+ ........+. .||.+|-+.-...+ ++...+..||-.+. +|...-++|.
T Consensus 73 ~Vys~~--~~~Wr~~~~~~~~~~~~~~~v~-~~G~lyw~~~~~~~--------~~~~~IvsFDl~~E---~f~~~i~~P~ 138 (230)
T TIGR01640 73 QVYTLG--SNSWRTIECSPPHHPLKSRGVC-INGVLYYLAYTLKT--------NPDYFIVSFDVSSE---RFKEFIPLPC 138 (230)
T ss_pred EEEEeC--CCCccccccCCCCccccCCeEE-ECCEEEEEEEECCC--------CCcEEEEEEEcccc---eEeeeeecCc
Confidence 889887 5799875 222 1111112344 59999988632211 11125788999999 9985223343
Q ss_pred ccc-cc-ceeeecCCCcEEEecC
Q 044265 359 PRM-YH-STANLLPDGRVLIAGS 379 (517)
Q Consensus 359 ~R~-yh-s~a~ll~dG~V~v~GG 379 (517)
.+. .+ ...+...+|++-++..
T Consensus 139 ~~~~~~~~~~L~~~~G~L~~v~~ 161 (230)
T TIGR01640 139 GNSDSVDYLSLINYKGKLAVLKQ 161 (230)
T ss_pred cccccccceEEEEECCEEEEEEe
Confidence 332 11 1223334677666554
No 87
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=90.86 E-value=6.1 Score=40.62 Aligned_cols=116 Identities=12% Similarity=0.132 Sum_probs=70.0
Q ss_pred cCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccCcCccceeEEcCCCcEEEEcCCCCC---------ceEE
Q 044265 98 LADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVNGRWYGTDQILPDGSVIILGGKGAN---------TVEY 168 (517)
Q Consensus 98 l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~~s~~~L~dG~v~vvGG~~~~---------~~E~ 168 (517)
+.+.+|+.++.. ..+-+||+. +..-... ..|..+..++.+..+ ++++||+...... ..|.
T Consensus 74 l~gskIv~~d~~----~~t~vyDt~----t~av~~~--P~l~~pk~~pisv~V-G~~LY~m~~~~~~~~~~~~~~~~FE~ 142 (342)
T PF07893_consen 74 LHGSKIVAVDQS----GRTLVYDTD----TRAVATG--PRLHSPKRCPISVSV-GDKLYAMDRSPFPEPAGRPDFPCFEA 142 (342)
T ss_pred ecCCeEEEEcCC----CCeEEEECC----CCeEecc--CCCCCCCcceEEEEe-CCeEEEeeccCccccccCccceeEEE
Confidence 457788888654 347899998 6777666 458887778877777 7789999875321 4565
Q ss_pred e---C------CCCC--ceeccchhhccccccCCCCceEEEccCC-cEEEEEC-C--ceEEEeCCCCeEEE
Q 044265 169 Y---P------PRNG--AVSFPFLADVEDKQMDNLYPYVHLLPNG-HLFIFAN-D--KAVMYDYETNKIAR 224 (517)
Q Consensus 169 y---P------~~~~--w~~~~~l~~t~~~~~~~~yp~~~~~~~G-~iyv~Gg-~--~~~~ydp~t~~w~~ 224 (517)
+ + .... |..+|..+-..+.......-..+++.|| .|||.-. . .+..||..+.+|.+
T Consensus 143 l~~~~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~~GTysfDt~~~~W~~ 213 (342)
T PF07893_consen 143 LVYRPPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRRWGTYSFDTESHEWRK 213 (342)
T ss_pred eccccccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCceEEEEEEcCCcceee
Confidence 5 2 1233 4444432211110000000122333344 6999554 4 58999999999985
No 88
>PTZ00421 coronin; Provisional
Probab=90.83 E-value=27 Score=37.82 Aligned_cols=117 Identities=18% Similarity=0.162 Sum_probs=62.5
Q ss_pred eeecC-CCcEEEecCCCCCCCeEEEecCCCCCCCCce-EeccCcccc-CcCccceeEEcCCC-cEEEEcCCCCCceEEe-
Q 044265 95 GQILA-DGTVLQTGGDLDGYKKIRKFSPCEANGLCDW-VELDDVELV-NGRWYGTDQILPDG-SVIILGGKGANTVEYY- 169 (517)
Q Consensus 95 ~~~l~-dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W-~~~~~~~m~-~~R~~~s~~~L~dG-~v~vvGG~~~~~~E~y- 169 (517)
..+.+ |+.++++|+.+ ..+++||.......... ..+ ..+. ..+.-.+++.-+++ .+++.||.+ .++.+|
T Consensus 81 v~fsP~d~~~LaSgS~D---gtIkIWdi~~~~~~~~~~~~l--~~L~gH~~~V~~l~f~P~~~~iLaSgs~D-gtVrIWD 154 (493)
T PTZ00421 81 VAFNPFDPQKLFTASED---GTIMGWGIPEEGLTQNISDPI--VHLQGHTKKVGIVSFHPSAMNVLASAGAD-MVVNVWD 154 (493)
T ss_pred EEEcCCCCCEEEEEeCC---CEEEEEecCCCccccccCcce--EEecCCCCcEEEEEeCcCCCCEEEEEeCC-CEEEEEE
Confidence 33445 78889999875 68999997521000011 111 1122 12223344555554 577877765 467788
Q ss_pred CCCCCceeccchhhccccccCCCCceEEEccCCcEEEEECC--ceEEEeCCCCeEEE
Q 044265 170 PPRNGAVSFPFLADVEDKQMDNLYPYVHLLPNGHLFIFAND--KAVMYDYETNKIAR 224 (517)
Q Consensus 170 P~~~~w~~~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~Gg~--~~~~ydp~t~~w~~ 224 (517)
..+..... .+.. +.... ..+...++|++++.|+. .+.+||+++++-..
T Consensus 155 l~tg~~~~--~l~~----h~~~V-~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~ 204 (493)
T PTZ00421 155 VERGKAVE--VIKC----HSDQI-TSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVS 204 (493)
T ss_pred CCCCeEEE--EEcC----CCCce-EEEEEECCCCEEEEecCCCEEEEEECCCCcEEE
Confidence 44332210 0110 00011 12344579999988874 58899999876543
No 89
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=90.42 E-value=19 Score=35.48 Aligned_cols=143 Identities=19% Similarity=0.119 Sum_probs=76.0
Q ss_pred EEEEECCCCCeEEcccc---CCCcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccCcCcccee
Q 044265 71 SAILDLQTNQIRPLMIL---TDTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVNGRWYGTD 147 (517)
Q Consensus 71 ~~~yDp~t~~w~~l~~~---~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~~s~ 147 (517)
+..+||+|...+..+.. .+.--...++...|+|..+|-..- --..||. ++.-... +-+..-.-.++
T Consensus 126 I~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~----yGrLdPa----~~~i~vf---paPqG~gpyGi 194 (353)
T COG4257 126 IGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGA----YGRLDPA----RNVISVF---PAPQGGGPYGI 194 (353)
T ss_pred eEEecCcccceEEeecccccCCCcccceeeCCCccEEEeecccc----ceecCcc----cCceeee---ccCCCCCCcce
Confidence 56789999888865543 222334567778899999984321 1145666 4443332 11222233567
Q ss_pred EEcCCCcEEEEcCCCCCceEEeCCCCCceeccchhh-ccccccCCCCceEEEccCCcEEEE--ECCceEEEeCCCCeEEE
Q 044265 148 QILPDGSVIILGGKGANTVEYYPPRNGAVSFPFLAD-VEDKQMDNLYPYVHLLPNGHLFIF--ANDKAVMYDYETNKIAR 224 (517)
Q Consensus 148 ~~L~dG~v~vvGG~~~~~~E~yP~~~~w~~~~~l~~-t~~~~~~~~yp~~~~~~~G~iyv~--Gg~~~~~ydp~t~~w~~ 224 (517)
|+-+||.|+...=..+.-..+-|.+..-...+.... +.+ ....+.-+-|++++. |+.+...|||.+.+|.
T Consensus 195 ~atpdGsvwyaslagnaiaridp~~~~aev~p~P~~~~~g------sRriwsdpig~~wittwg~g~l~rfdPs~~sW~- 267 (353)
T COG4257 195 CATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAG------SRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWI- 267 (353)
T ss_pred EECCCCcEEEEeccccceEEcccccCCcceecCCCccccc------ccccccCccCcEEEeccCCceeeEeCcccccce-
Confidence 888999999873211110111122211111110000 000 012344457788875 5567889999999997
Q ss_pred ecCCCCCC
Q 044265 225 EYPPLDGG 232 (517)
Q Consensus 225 ~~p~~p~~ 232 (517)
.. +||+.
T Consensus 268 ey-pLPgs 274 (353)
T COG4257 268 EY-PLPGS 274 (353)
T ss_pred ee-eCCCC
Confidence 34 35653
No 90
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=90.26 E-value=0.43 Score=50.04 Aligned_cols=129 Identities=10% Similarity=0.057 Sum_probs=81.1
Q ss_pred CcccceeecCCC--cEEEecCCCC--CCCeEEEecCCCCCCCCceEeccC-ccccCcCccceeEEc-CCCcEEEEcCCCC
Q 044265 90 TWCSSGQILADG--TVLQTGGDLD--GYKKIRKFSPCEANGLCDWVELDD-VELVNGRWYGTDQIL-PDGSVIILGGKGA 163 (517)
Q Consensus 90 ~~c~~~~~l~dG--~l~v~GG~~~--g~~~v~~ydp~~~~~t~~W~~~~~-~~m~~~R~~~s~~~L-~dG~v~vvGG~~~ 163 (517)
++..++.+.-++ -||..||++. .....++|... .+.|+.... ...+-.|..|-++.- +..|+|.+|-.-.
T Consensus 260 ~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~----e~~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLlG~Y~~ 335 (723)
T KOG2437|consen 260 MRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVK----ENQWTCINRDTEGPGARSCHRMVIDISRRKLYLLGRYLD 335 (723)
T ss_pred ccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCC----cceeEEeecCCCCCcchhhhhhhhhhhHhHHhhhhhccc
Confidence 344444554444 7999999963 23567788877 788998721 235677888887653 1248999986422
Q ss_pred C----------ceEEe-CCCCCceeccchhhccccccCCCCceEEEccCCc--EEEEECCc----------eEEEeCCCC
Q 044265 164 N----------TVEYY-PPRNGAVSFPFLADVEDKQMDNLYPYVHLLPNGH--LFIFANDK----------AVMYDYETN 220 (517)
Q Consensus 164 ~----------~~E~y-P~~~~w~~~~~l~~t~~~~~~~~yp~~~~~~~G~--iyv~Gg~~----------~~~ydp~t~ 220 (517)
. ....| -.++.|..+.+- ...|..|.+.|-|..++...| |||+||+. ...||....
T Consensus 336 sS~r~~~s~RsDfW~FDi~~~~W~~ls~d-t~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~ 414 (723)
T KOG2437|consen 336 SSVRNSKSLRSDFWRFDIDTNTWMLLSED-TAADGGPKLVFDHQMCVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQ 414 (723)
T ss_pred cccccccccccceEEEecCCceeEEeccc-ccccCCcceeecceeeEecCcceEEEecCeeccCCCccccceEEEecCCc
Confidence 1 23344 556788766542 223445566665555554444 99999953 456788777
Q ss_pred eEE
Q 044265 221 KIA 223 (517)
Q Consensus 221 ~w~ 223 (517)
.|.
T Consensus 415 ~w~ 417 (723)
T KOG2437|consen 415 TWK 417 (723)
T ss_pred cHH
Confidence 786
No 91
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=90.19 E-value=26 Score=36.74 Aligned_cols=147 Identities=15% Similarity=0.098 Sum_probs=77.2
Q ss_pred EEEEeeCCEEEEEeccCCCCCCcccCCCcccccccccccccCCcceEEEEECCCCCeEEccccCCCcccceee-cCCCcE
Q 044265 25 HTAVTRFNTVVLLDRTNIGPSRKMLGRGRCRLDRNDRALKRDCYAHSAILDLQTNQIRPLMILTDTWCSSGQI-LADGTV 103 (517)
Q Consensus 25 h~~ll~~gkv~~~gg~~~g~~~~~~~~G~~~~~~~~~~~~~d~~~~~~~yDp~t~~w~~l~~~~~~~c~~~~~-l~dG~l 103 (517)
-+++-+|||+++.||.+ .++.+||..|.+-...-..+..--.+-++ .....+
T Consensus 207 ~~avS~Dgkylatgg~d---------------------------~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~l 259 (479)
T KOG0299|consen 207 TLAVSSDGKYLATGGRD---------------------------RHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSEL 259 (479)
T ss_pred EEEEcCCCcEEEecCCC---------------------------ceEEEecCcccchhhcccccccceeeeeeecCccce
Confidence 35677899999999853 15778998876544331111110011111 112344
Q ss_pred EEecCCCCCCCeEEEecCCCCCCCCceEeccCcccc-CcCccceeEEcCCCcEEEEcCCCCCceEEe--CCCCCceeccc
Q 044265 104 LQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELV-NGRWYGTDQILPDGSVIILGGKGANTVEYY--PPRNGAVSFPF 180 (517)
Q Consensus 104 ~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~-~~R~~~s~~~L~dG~v~vvGG~~~~~~E~y--P~~~~w~~~~~ 180 (517)
|..+ . .+++.+|+.. .....+. |- .+-.-.+.-+|.-+|+..+||++ .++.+| |...+-...+.
T Consensus 260 ys~s-~---Drsvkvw~~~----~~s~vet----lyGHqd~v~~IdaL~reR~vtVGgrD-rT~rlwKi~eesqlifrg~ 326 (479)
T KOG0299|consen 260 YSAS-A---DRSVKVWSID----QLSYVET----LYGHQDGVLGIDALSRERCVTVGGRD-RTVRLWKIPEESQLIFRGG 326 (479)
T ss_pred eeee-c---CCceEEEehh----HhHHHHH----HhCCccceeeechhcccceEEecccc-ceeEEEeccccceeeeeCC
Confidence 4433 2 2567777665 3333321 21 22223344456678999999987 467777 43222111110
Q ss_pred hhhccccccCCCCceEEEccCCcEEEEECC--ceEEEeCCCCe
Q 044265 181 LADVEDKQMDNLYPYVHLLPNGHLFIFAND--KAVMYDYETNK 221 (517)
Q Consensus 181 l~~t~~~~~~~~yp~~~~~~~G~iyv~Gg~--~~~~ydp~t~~ 221 (517)
...+-++.+.|..-|+.|.. ++.+|+..+.+
T Consensus 327 ----------~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKk 359 (479)
T KOG0299|consen 327 ----------EGSIDCVAFINDEHFVSGSDNGSIALWSLLKKK 359 (479)
T ss_pred ----------CCCeeeEEEecccceeeccCCceEEEeeecccC
Confidence 11223555678888888875 45566655544
No 92
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=89.65 E-value=12 Score=38.66 Aligned_cols=185 Identities=16% Similarity=0.157 Sum_probs=108.1
Q ss_pred CCCcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccCc--CccceeEEcCCCcEEEEcCCCCCc
Q 044265 88 TDTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVNG--RWYGTDQILPDGSVIILGGKGANT 165 (517)
Q Consensus 88 ~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~--R~~~s~~~L~dG~v~vvGG~~~~~ 165 (517)
|-.+-+..++-++|+.+.++-++ .+-++||.. +.+ ++ -|+++ +.-++.+.-+||.+.+.||.+..
T Consensus 260 H~~RVs~VafHPsG~~L~TasfD---~tWRlWD~~----tk~--El---L~QEGHs~~v~~iaf~~DGSL~~tGGlD~~- 326 (459)
T KOG0272|consen 260 HLARVSRVAFHPSGKFLGTASFD---STWRLWDLE----TKS--EL---LLQEGHSKGVFSIAFQPDGSLAATGGLDSL- 326 (459)
T ss_pred chhhheeeeecCCCceeeecccc---cchhhcccc----cch--hh---HhhcccccccceeEecCCCceeeccCccch-
Confidence 44566667778899999988775 566788877 322 22 23333 44567778889999999998752
Q ss_pred eEEe-CCCCCceeccchhhccccccCCCCceEEEccCCcEEEEEC--CceEEEeCCCCeEEEecCCCCCCCCCCCCCCce
Q 044265 166 VEYY-PPRNGAVSFPFLADVEDKQMDNLYPYVHLLPNGHLFIFAN--DKAVMYDYETNKIAREYPPLDGGPRNYPSAGSS 242 (517)
Q Consensus 166 ~E~y-P~~~~w~~~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~Gg--~~~~~ydp~t~~w~~~~p~~p~~~r~~~~~g~~ 242 (517)
..+| -.+..-. + +|.... ...| .+...|||...+.|+ +.+.+||.+..+-... ||.. .+-- +-
T Consensus 327 ~RvWDlRtgr~i-m-~L~gH~----k~I~-~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~---ipAH-~nlV---S~ 392 (459)
T KOG0272|consen 327 GRVWDLRTGRCI-M-FLAGHI----KEIL-SVAFSPNGYHLATGSSDNTCKVWDLRMRSELYT---IPAH-SNLV---SQ 392 (459)
T ss_pred hheeecccCcEE-E-Eecccc----ccee-eEeECCCceEEeecCCCCcEEEeeeccccccee---cccc-cchh---hh
Confidence 2344 2222221 0 011100 0011 355678999999987 5688999887654433 4532 1110 11
Q ss_pred eeeecccCccccEEEEEcCCcCCcccccCCCCCCCCceeEEEecCCCCCceec-CC--CcceeeeeeEEecCCcEEEEcC
Q 044265 243 AMLALEGDFATAVIVVCGGAQFGAFIQRSTDTPAHGSCGRIIATSADPTWEME-DM--PFGRIMGDMVMLPTGDVLIING 319 (517)
Q Consensus 243 v~l~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W~~~-~m--~~~R~~~~~v~lpdG~v~v~GG 319 (517)
|-+-. ..|+.++.++++.. +-.+. +..|+.. .| ...+++.. -+-+|+..++.++
T Consensus 393 Vk~~p----~~g~fL~TasyD~t--------------~kiWs----~~~~~~~ksLaGHe~kV~s~-Dis~d~~~i~t~s 449 (459)
T KOG0272|consen 393 VKYSP----QEGYFLVTASYDNT--------------VKIWS----TRTWSPLKSLAGHEGKVISL-DISPDSQAIATSS 449 (459)
T ss_pred eEecc----cCCeEEEEcccCcc--------------eeeec----CCCcccchhhcCCccceEEE-EeccCCceEEEec
Confidence 22211 25788888887621 11111 3567765 55 45677766 3457999888888
Q ss_pred ccC
Q 044265 320 AQA 322 (517)
Q Consensus 320 ~~~ 322 (517)
.++
T Consensus 450 ~DR 452 (459)
T KOG0272|consen 450 FDR 452 (459)
T ss_pred cCc
Confidence 763
No 93
>PTZ00420 coronin; Provisional
Probab=89.41 E-value=38 Score=37.35 Aligned_cols=140 Identities=11% Similarity=-0.003 Sum_probs=72.4
Q ss_pred eEEEEECCCCCeEEccccCCCcccceeecCC-CcEEEecCCCCCCCeEEEecCCCCCCCCceEec--cCcccc-CcCccc
Q 044265 70 HSAILDLQTNQIRPLMILTDTWCSSGQILAD-GTVLQTGGDLDGYKKIRKFSPCEANGLCDWVEL--DDVELV-NGRWYG 145 (517)
Q Consensus 70 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~d-G~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~--~~~~m~-~~R~~~ 145 (517)
.+.+|++.+..-...-..|........+.++ +.++++||.+ ..+++||.... ...-... +...+. ..+.-.
T Consensus 55 vI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~D---gtIrIWDi~t~--~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 55 AIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSED---LTIRVWEIPHN--DESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred EEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCC---CeEEEEECCCC--CccccccccceEEeecCCCcEE
Confidence 4667776654322111233333333445554 7899999864 58999997621 0001100 001122 122334
Q ss_pred eeEEcCCCcEE-EEcCCCCCceEEe-CCCCCce-eccchhhccccccCCCCceEEEccCCcEEEEEC--CceEEEeCCCC
Q 044265 146 TDQILPDGSVI-ILGGKGANTVEYY-PPRNGAV-SFPFLADVEDKQMDNLYPYVHLLPNGHLFIFAN--DKAVMYDYETN 220 (517)
Q Consensus 146 s~~~L~dG~v~-vvGG~~~~~~E~y-P~~~~w~-~~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~Gg--~~~~~ydp~t~ 220 (517)
+++.-+++..+ +.||.+ .++.+| ..+..-. .... ... -..+...++|++++.++ ..+.+||++++
T Consensus 130 sVaf~P~g~~iLaSgS~D-gtIrIWDl~tg~~~~~i~~--------~~~-V~SlswspdG~lLat~s~D~~IrIwD~Rsg 199 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFD-SFVNIWDIENEKRAFQINM--------PKK-LSSLKWNIKGNLLSGTCVGKHMHIIDPRKQ 199 (568)
T ss_pred EEEECCCCCeEEEEEeCC-CeEEEEECCCCcEEEEEec--------CCc-EEEEEECCCCCEEEEEecCCEEEEEECCCC
Confidence 45556667644 455554 567888 4433211 1110 000 11244457999998875 46899999987
Q ss_pred eEEE
Q 044265 221 KIAR 224 (517)
Q Consensus 221 ~w~~ 224 (517)
+-..
T Consensus 200 ~~i~ 203 (568)
T PTZ00420 200 EIAS 203 (568)
T ss_pred cEEE
Confidence 6543
No 94
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=89.33 E-value=41 Score=37.60 Aligned_cols=158 Identities=16% Similarity=0.219 Sum_probs=83.3
Q ss_pred ceEEEEECCCCCeEEccccCCCcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCC--ceEeccCccccCcCccc-
Q 044265 69 AHSAILDLQTNQIRPLMILTDTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLC--DWVELDDVELVNGRWYG- 145 (517)
Q Consensus 69 ~~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~--~W~~~~~~~m~~~R~~~- 145 (517)
.+..+|+-.++++.--...|-..-.+.+..+||.++++|+.+ .+|.+||...+ .| ++++. -...
T Consensus 330 gQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eD---gKVKvWn~~Sg--fC~vTFteH--------ts~Vt 396 (893)
T KOG0291|consen 330 GQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAED---GKVKVWNTQSG--FCFVTFTEH--------TSGVT 396 (893)
T ss_pred ceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCC---CcEEEEeccCc--eEEEEeccC--------CCceE
Confidence 356677776666654444455555566778999999999975 68999997621 12 22222 1111
Q ss_pred eeEEcCCCcEEEEcCCCCCceEEe-CCCC-Cce--eccchhhccccccCCCCceEEEc--cCCcEEEEECC---ceEEEe
Q 044265 146 TDQILPDGSVIILGGKGANTVEYY-PPRN-GAV--SFPFLADVEDKQMDNLYPYVHLL--PNGHLFIFAND---KAVMYD 216 (517)
Q Consensus 146 s~~~L~dG~v~vvGG~~~~~~E~y-P~~~-~w~--~~~~l~~t~~~~~~~~yp~~~~~--~~G~iyv~Gg~---~~~~yd 216 (517)
+.....+|++++..-.++ ++..| -+.- ... ..|-. -.+..+. +.|.|.+.|.. ...+|+
T Consensus 397 ~v~f~~~g~~llssSLDG-tVRAwDlkRYrNfRTft~P~p-----------~QfscvavD~sGelV~AG~~d~F~IfvWS 464 (893)
T KOG0291|consen 397 AVQFTARGNVLLSSSLDG-TVRAWDLKRYRNFRTFTSPEP-----------IQFSCVAVDPSGELVCAGAQDSFEIFVWS 464 (893)
T ss_pred EEEEEecCCEEEEeecCC-eEEeeeecccceeeeecCCCc-----------eeeeEEEEcCCCCEEEeeccceEEEEEEE
Confidence 222333566655544332 33333 1110 011 11110 0123444 45999999885 356778
Q ss_pred CCCCeEEEecCCCCCCCCCCCCCCceeeeecccCccccEEEEEcCCc
Q 044265 217 YETNKIAREYPPLDGGPRNYPSAGSSAMLALEGDFATAVIVVCGGAQ 263 (517)
Q Consensus 217 p~t~~w~~~~p~~p~~~r~~~~~g~~v~l~~~~~~~~gkI~v~GG~~ 263 (517)
.+|++-... +.+. ..|- ++.++. ..+.+++.|-.+
T Consensus 465 ~qTGqllDi---LsGH--EgPV--s~l~f~-----~~~~~LaS~SWD 499 (893)
T KOG0291|consen 465 VQTGQLLDI---LSGH--EGPV--SGLSFS-----PDGSLLASGSWD 499 (893)
T ss_pred eecCeeeeh---hcCC--CCcc--eeeEEc-----cccCeEEecccc
Confidence 888876532 3432 2221 111222 267788888776
No 95
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=89.14 E-value=20 Score=33.83 Aligned_cols=143 Identities=11% Similarity=0.087 Sum_probs=68.0
Q ss_pred eEEEEECCCCCeEEccccCCCcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceE-eccCccccCc-Ccccee
Q 044265 70 HSAILDLQTNQIRPLMILTDTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWV-ELDDVELVNG-RWYGTD 147 (517)
Q Consensus 70 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~-~~~~~~m~~~-R~~~s~ 147 (517)
...+||..|++..-........... ....+++||+.... ..+..+|..++ .-.|. .. ...+.. -.....
T Consensus 47 ~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~~~v~v~~~~----~~l~~~d~~tG--~~~W~~~~--~~~~~~~~~~~~~ 117 (238)
T PF13360_consen 47 NLYALDAKTGKVLWRFDLPGPISGA-PVVDGGRVYVGTSD----GSLYALDAKTG--KVLWSIYL--TSSPPAGVRSSSS 117 (238)
T ss_dssp EEEEEETTTSEEEEEEECSSCGGSG-EEEETTEEEEEETT----SEEEEEETTTS--CEEEEEEE---SSCTCSTB--SE
T ss_pred EEEEEECCCCCEEEEeeccccccce-eeecccccccccce----eeeEecccCCc--ceeeeecc--ccccccccccccC
Confidence 4778999888743222223333222 35668888877632 37999997754 56798 33 111222 222333
Q ss_pred EEcCCCcEEEEcCCCCCceEEe-CCCCC--cee-ccchhhccccccCCCCceEEEccCCcEEEEECCc-eEEEeCCCCe-
Q 044265 148 QILPDGSVIILGGKGANTVEYY-PPRNG--AVS-FPFLADVEDKQMDNLYPYVHLLPNGHLFIFANDK-AVMYDYETNK- 221 (517)
Q Consensus 148 ~~L~dG~v~vvGG~~~~~~E~y-P~~~~--w~~-~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~Gg~~-~~~ydp~t~~- 221 (517)
..+.++++ +++..+ ..+-.+ +.+.+ |.. ....................++.+|+||+..+.. +..+|.++++
T Consensus 118 ~~~~~~~~-~~~~~~-g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg~~ 195 (238)
T PF13360_consen 118 PAVDGDRL-YVGTSS-GKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAVDLATGEK 195 (238)
T ss_dssp EEEETTEE-EEEETC-SEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEEETTTTEE
T ss_pred ceEecCEE-EEEecc-CcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEEECCCCCE
Confidence 33324444 444432 223333 44332 331 1110000000000000123344578999988654 4455999987
Q ss_pred -EE
Q 044265 222 -IA 223 (517)
Q Consensus 222 -w~ 223 (517)
|.
T Consensus 196 ~w~ 198 (238)
T PF13360_consen 196 LWS 198 (238)
T ss_dssp EEE
T ss_pred EEE
Confidence 74
No 96
>PLN00181 protein SPA1-RELATED; Provisional
Probab=88.85 E-value=50 Score=38.01 Aligned_cols=131 Identities=15% Similarity=0.159 Sum_probs=68.5
Q ss_pred eEEEEECCCCCeEEccccCCCcccceeec-CCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccCcCccceeE
Q 044265 70 HSAILDLQTNQIRPLMILTDTWCSSGQIL-ADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVNGRWYGTDQ 148 (517)
Q Consensus 70 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l-~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~~s~~ 148 (517)
.+.+||..+++....-..+.....+..+. .++.++++||.+ ..+++||.. +..-. ..+.......++.
T Consensus 556 ~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~D---g~v~iWd~~----~~~~~----~~~~~~~~v~~v~ 624 (793)
T PLN00181 556 VVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDD---GSVKLWSIN----QGVSI----GTIKTKANICCVQ 624 (793)
T ss_pred eEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCC---CEEEEEECC----CCcEE----EEEecCCCeEEEE
Confidence 57889988776544333444444344454 378999999874 679999987 22211 1121111111222
Q ss_pred E-cCCCcEEEEcCCCCCceEEe-CCCCCceeccchhhccccccCCCCceEEEccCCcEEEEEC--CceEEEeCCC
Q 044265 149 I-LPDGSVIILGGKGANTVEYY-PPRNGAVSFPFLADVEDKQMDNLYPYVHLLPNGHLFIFAN--DKAVMYDYET 219 (517)
Q Consensus 149 ~-L~dG~v~vvGG~~~~~~E~y-P~~~~w~~~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~Gg--~~~~~ydp~t 219 (517)
. -++|..+++|+.+ ..+.+| .....-. ...+.. +..... .+.. .++..++.++ ..+.+||...
T Consensus 625 ~~~~~g~~latgs~d-g~I~iwD~~~~~~~-~~~~~~----h~~~V~-~v~f-~~~~~lvs~s~D~~ikiWd~~~ 691 (793)
T PLN00181 625 FPSESGRSLAFGSAD-HKVYYYDLRNPKLP-LCTMIG----HSKTVS-YVRF-VDSSTLVSSSTDNTLKLWDLSM 691 (793)
T ss_pred EeCCCCCEEEEEeCC-CeEEEEECCCCCcc-ceEecC----CCCCEE-EEEE-eCCCEEEEEECCCEEEEEeCCC
Confidence 2 2368888888765 456777 4332110 000000 000000 1111 3677777665 4678999864
No 97
>PRK01742 tolB translocation protein TolB; Provisional
Probab=88.84 E-value=35 Score=36.12 Aligned_cols=136 Identities=15% Similarity=0.234 Sum_probs=73.6
Q ss_pred eEEEEECCCCCeEEccccCCCcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccCcCccceeEE
Q 044265 70 HSAILDLQTNQIRPLMILTDTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVNGRWYGTDQI 149 (517)
Q Consensus 70 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~~s~~~ 149 (517)
...++|..+++-+.+..... ........+||+.+++....++...++.+|.. +.....+ .. ..-.....+.
T Consensus 229 ~i~i~dl~tg~~~~l~~~~g-~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~----~~~~~~l--t~--~~~~~~~~~w 299 (429)
T PRK01742 229 QLVVHDLRSGARKVVASFRG-HNGAPAFSPDGSRLAFASSKDGVLNIYVMGAN----GGTPSQL--TS--GAGNNTEPSW 299 (429)
T ss_pred EEEEEeCCCCceEEEecCCC-ccCceeECCCCCEEEEEEecCCcEEEEEEECC----CCCeEee--cc--CCCCcCCEEE
Confidence 46788988887665543222 12235677899977776544444456777876 4454444 11 1111234566
Q ss_pred cCCCcEEEEcCCCCCceEEe--CCCCCceeccchhhccccccCCCCceEEEccCCcEEEE-ECCceEEEeCCCCeEEE
Q 044265 150 LPDGSVIILGGKGANTVEYY--PPRNGAVSFPFLADVEDKQMDNLYPYVHLLPNGHLFIF-ANDKAVMYDYETNKIAR 224 (517)
Q Consensus 150 L~dG~v~vvGG~~~~~~E~y--P~~~~w~~~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~-Gg~~~~~ydp~t~~w~~ 224 (517)
.+||+-+++........++| +........ +. . .. +. ....+||+.+++ ++....++|..++++..
T Consensus 300 SpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~--l~-~-----~~-~~-~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~ 367 (429)
T PRK01742 300 SPDGQSILFTSDRSGSPQVYRMSASGGGASL--VG-G-----RG-YS-AQISADGKTLVMINGDNVVKQDLTSGSTEV 367 (429)
T ss_pred CCCCCEEEEEECCCCCceEEEEECCCCCeEE--ec-C-----CC-CC-ccCCCCCCEEEEEcCCCEEEEECCCCCeEE
Confidence 78998555443222345566 322222111 10 0 01 21 335678875544 44567789999888763
No 98
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=88.67 E-value=13 Score=41.41 Aligned_cols=141 Identities=13% Similarity=0.120 Sum_probs=80.3
Q ss_pred eEEEEECCCCCeEEccccCCCcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccCcCccceeEE
Q 044265 70 HSAILDLQTNQIRPLMILTDTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVNGRWYGTDQI 149 (517)
Q Consensus 70 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~~s~~~ 149 (517)
...+|+.+|++...+-..|..--++-++-++|.+++.|-++ ++|++||-- .+|.+. ..+....--.+++.
T Consensus 459 ~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWD---kTVRiW~if-----~s~~~v--Etl~i~sdvl~vsf 528 (893)
T KOG0291|consen 459 EIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWD---KTVRIWDIF-----SSSGTV--ETLEIRSDVLAVSF 528 (893)
T ss_pred EEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEecccc---ceEEEEEee-----ccCcee--eeEeeccceeEEEE
Confidence 57899999999998888887766666788999999999886 889999876 344443 23333332333444
Q ss_pred cCCCcEEEEcCCCCCceEEe-CCCCCce----------eccchhhcccc---ccCCCCceEEEccCCcEEEEEC--CceE
Q 044265 150 LPDGSVIILGGKGANTVEYY-PPRNGAV----------SFPFLADVEDK---QMDNLYPYVHLLPNGHLFIFAN--DKAV 213 (517)
Q Consensus 150 L~dG~v~vvGG~~~~~~E~y-P~~~~w~----------~~~~l~~t~~~---~~~~~yp~~~~~~~G~iyv~Gg--~~~~ 213 (517)
-|||+=+++.-.++ ...+| +....-. .......+..+ .....+-......||+..+.|| +.+-
T Consensus 529 rPdG~elaVaTldg-qItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iC 607 (893)
T KOG0291|consen 529 RPDGKELAVATLDG-QITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSIC 607 (893)
T ss_pred cCCCCeEEEEEecc-eEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEE
Confidence 45555555443321 11222 1110000 00000000000 0112233345567999988888 4678
Q ss_pred EEeCCCCe
Q 044265 214 MYDYETNK 221 (517)
Q Consensus 214 ~ydp~t~~ 221 (517)
+||..+.-
T Consensus 608 iY~v~~~v 615 (893)
T KOG0291|consen 608 IYDVPEGV 615 (893)
T ss_pred EEECchhh
Confidence 89987753
No 99
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=88.41 E-value=15 Score=37.82 Aligned_cols=60 Identities=13% Similarity=0.101 Sum_probs=43.4
Q ss_pred eeEEEEeeCCEEEEEeccCCCCCCcccCCCcccccccccccccCCcceEEEEECCCCCeEEccccCCCcccceeecCCCc
Q 044265 23 SMHTAVTRFNTVVLLDRTNIGPSRKMLGRGRCRLDRNDRALKRDCYAHSAILDLQTNQIRPLMILTDTWCSSGQILADGT 102 (517)
Q Consensus 23 ~~h~~ll~~gkv~~~gg~~~g~~~~~~~~G~~~~~~~~~~~~~d~~~~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~ 102 (517)
.|+-+.+.+.||+.++.. | .+.+||++|.....++.++...+...++..+++
T Consensus 68 ~~~F~al~gskIv~~d~~-----------~-----------------~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~ 119 (342)
T PF07893_consen 68 SMDFFALHGSKIVAVDQS-----------G-----------------RTLVYDTDTRAVATGPRLHSPKRCPISVSVGDK 119 (342)
T ss_pred eeEEEEecCCeEEEEcCC-----------C-----------------CeEEEECCCCeEeccCCCCCCCcceEEEEeCCe
Confidence 455555578899998642 1 267999999999988887665544555666788
Q ss_pred EEEecCCC
Q 044265 103 VLQTGGDL 110 (517)
Q Consensus 103 l~v~GG~~ 110 (517)
||+.-...
T Consensus 120 LY~m~~~~ 127 (342)
T PF07893_consen 120 LYAMDRSP 127 (342)
T ss_pred EEEeeccC
Confidence 99988754
No 100
>PTZ00420 coronin; Provisional
Probab=88.20 E-value=20 Score=39.57 Aligned_cols=135 Identities=13% Similarity=0.090 Sum_probs=70.4
Q ss_pred eEEEEECCCCCeEEccccCCCcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccCcCc-cceeE
Q 044265 70 HSAILDLQTNQIRPLMILTDTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVNGRW-YGTDQ 148 (517)
Q Consensus 70 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~-~~s~~ 148 (517)
.+.+||..+++-...-. +.....+....++|.++++++.+ +.+++||+. +.+ .. ..+..... ..+.+
T Consensus 149 tIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D---~~IrIwD~R----sg~--~i--~tl~gH~g~~~s~~ 216 (568)
T PTZ00420 149 FVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVG---KHMHIIDPR----KQE--IA--SSFHIHDGGKNTKN 216 (568)
T ss_pred eEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecC---CEEEEEECC----CCc--EE--EEEecccCCceeEE
Confidence 57899998876322111 22223345567899999988753 689999998 322 11 11211110 01111
Q ss_pred -----EcCCCcEEEEcCCCC---CceEEe-CCC-CCceeccchhhccccccCCCCceEEEccCCcEEEEEC--CceEEEe
Q 044265 149 -----ILPDGSVIILGGKGA---NTVEYY-PPR-NGAVSFPFLADVEDKQMDNLYPYVHLLPNGHLFIFAN--DKAVMYD 216 (517)
Q Consensus 149 -----~L~dG~v~vvGG~~~---~~~E~y-P~~-~~w~~~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~Gg--~~~~~yd 216 (517)
.-+|+..++.+|.+. .++.+| ... ...... . ..+.....+.|+ +--.+|.+|+.|. ..+.+|+
T Consensus 217 v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~--~--~ld~~~~~L~p~-~D~~tg~l~lsGkGD~tIr~~e 291 (568)
T PTZ00420 217 IWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVT--M--SIDNASAPLIPH-YDESTGLIYLIGKGDGNCRYYQ 291 (568)
T ss_pred EEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEE--E--EecCCccceEEe-eeCCCCCEEEEEECCCeEEEEE
Confidence 115777777777654 357788 442 221110 0 001001111121 1123689999883 5688899
Q ss_pred CCCCe
Q 044265 217 YETNK 221 (517)
Q Consensus 217 p~t~~ 221 (517)
...+.
T Consensus 292 ~~~~~ 296 (568)
T PTZ00420 292 HSLGS 296 (568)
T ss_pred ccCCc
Confidence 87664
No 101
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=88.10 E-value=35 Score=35.24 Aligned_cols=259 Identities=14% Similarity=0.086 Sum_probs=129.7
Q ss_pred EEEEECCCCC--eEEccccCCCcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccCcCccceeE
Q 044265 71 SAILDLQTNQ--IRPLMILTDTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVNGRWYGTDQ 148 (517)
Q Consensus 71 ~~~yDp~t~~--w~~l~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~~s~~ 148 (517)
...+|+.+++ |+.........+++.....||+||+.... ....+||..++ +..|... .... .++... +
T Consensus 80 i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~----g~~y~ld~~~G--~~~W~~~--~~~~-~~~~~~-~ 149 (370)
T COG1520 80 IFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWD----GKLYALDASTG--TLVWSRN--VGGS-PYYASP-P 149 (370)
T ss_pred EEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEeccc----ceEEEEECCCC--cEEEEEe--cCCC-eEEecC-c
Confidence 5578888877 76544333345667777779998876543 26888998643 7889875 2222 555444 4
Q ss_pred EcCCCcEEEEcCCCCCceEEe-CCC--CCcee-ccc-hhhccccccCCCCceEEEccCCcEEEEECC---ceEEEeCCCC
Q 044265 149 ILPDGSVIILGGKGANTVEYY-PPR--NGAVS-FPF-LADVEDKQMDNLYPYVHLLPNGHLFIFAND---KAVMYDYETN 220 (517)
Q Consensus 149 ~L~dG~v~vvGG~~~~~~E~y-P~~--~~w~~-~~~-l~~t~~~~~~~~yp~~~~~~~G~iyv~Gg~---~~~~ydp~t~ 220 (517)
+..|+.||+.. ....+-.. +.+ ..|.. .+. +... ........+|.+|+-... ....+|+.++
T Consensus 150 v~~~~~v~~~s--~~g~~~al~~~tG~~~W~~~~~~~~~~~--------~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G 219 (370)
T COG1520 150 VVGDGTVYVGT--DDGHLYALNADTGTLKWTYETPAPLSLS--------IYGSPAIASGTVYVGSDGYDGILYALNAEDG 219 (370)
T ss_pred EEcCcEEEEec--CCCeEEEEEccCCcEEEEEecCCccccc--------cccCceeecceEEEecCCCcceEEEEEccCC
Confidence 44589888864 11222222 332 34541 111 1110 011112457777776442 3566788664
Q ss_pred --eEEEecCCCCCCCCCCCCCCceeeeecccCccccEEEEEcCCcCCcccccCCCCCCCCceeEEEecCCCCCceec-CC
Q 044265 221 --KIAREYPPLDGGPRNYPSAGSSAMLALEGDFATAVIVVCGGAQFGAFIQRSTDTPAHGSCGRIIATSADPTWEME-DM 297 (517)
Q Consensus 221 --~w~~~~p~~p~~~r~~~~~g~~v~l~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W~~~-~m 297 (517)
.|.... ..+. .+. ... ..| .+..+.|++.|+.-.+.+ .....++|..+....|+.. ++
T Consensus 220 ~~~w~~~~-~~~~-~~~----~~~-~~~---~~~~~~v~v~~~~~~~~~---------~g~~~~l~~~~G~~~W~~~~~~ 280 (370)
T COG1520 220 TLKWSQKV-SQTI-GRT----AIS-TTP---AVDGGPVYVDGGVYAGSY---------GGKLLCLDADTGELIWSFPAGG 280 (370)
T ss_pred cEeeeeee-eccc-Ccc----ccc-ccc---cccCceEEECCcEEEEec---------CCeEEEEEcCCCceEEEEeccc
Confidence 555311 1111 011 010 000 123678888877321111 1224566666556778875 42
Q ss_pred C--cceeeeeeEEecCCcEEEEcCccCCCCCcccCCCCccccEEEeCCCCCCc-eeccCCCCCccccccceeeecCCCcE
Q 044265 298 P--FGRIMGDMVMLPTGDVLIINGAQAGTQGFEMASNPCLFPVLYRPTQPAGL-RFMTLNPGTIPRMYHSTANLLPDGRV 374 (517)
Q Consensus 298 ~--~~R~~~~~v~lpdG~v~v~GG~~~g~~g~~~~~~~~~~~e~YdP~t~~g~-~W~~~~~~~~~R~yhs~a~ll~dG~V 374 (517)
. ..+...+...--||++|+..-..... ....+.++++..+... .|.....- +. ........||.+
T Consensus 281 ~~~~~~~~~~~~~~~dG~v~~~~~~~~~~--------~~~~~~~~~~~~g~~~~~w~~~~~g---~~-~~~~~~~~~g~~ 348 (370)
T COG1520 281 SVQGSGLYTTPVAGADGKVYIGFTDNDGR--------GSGSLYALADVPGGTLLKWSYPVGG---GY-SLSTVAGSDGTL 348 (370)
T ss_pred EeccCCeeEEeecCCCccEEEEEeccccc--------cccceEEEeccCCCeeEEEEEeCCC---ce-ecccceeccCeE
Confidence 2 23333333343599999875433110 1224567776443222 56543332 22 222333456666
Q ss_pred EEecCC
Q 044265 375 LIAGSN 380 (517)
Q Consensus 375 ~v~GG~ 380 (517)
|..+-+
T Consensus 349 y~~~~~ 354 (370)
T COG1520 349 YFGGDD 354 (370)
T ss_pred EecccC
Confidence 666543
No 102
>PRK03629 tolB translocation protein TolB; Provisional
Probab=87.82 E-value=40 Score=35.68 Aligned_cols=137 Identities=10% Similarity=0.115 Sum_probs=75.5
Q ss_pred eEEEEECCCCCeEEccccCCCcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccCcCccceeEE
Q 044265 70 HSAILDLQTNQIRPLMILTDTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVNGRWYGTDQI 149 (517)
Q Consensus 70 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~~s~~~ 149 (517)
...++|..+++-+.+...... .......+||+.+++-...++...++++|.. +.+...+ ..-. -.......
T Consensus 224 ~i~i~dl~~G~~~~l~~~~~~-~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~----tg~~~~l--t~~~--~~~~~~~w 294 (429)
T PRK03629 224 ALVIQTLANGAVRQVASFPRH-NGAPAFSPDGSKLAFALSKTGSLNLYVMDLA----SGQIRQV--TDGR--SNNTEPTW 294 (429)
T ss_pred EEEEEECCCCCeEEccCCCCC-cCCeEECCCCCEEEEEEcCCCCcEEEEEECC----CCCEEEc--cCCC--CCcCceEE
Confidence 567889888887776543322 2235678899866654333344578899987 5555554 1111 11234456
Q ss_pred cCCCcEEEEcCCCCCceEEe--C-CCCCceeccchhhccccccCCCCceEEEccCCcEEEEEC-----CceEEEeCCCCe
Q 044265 150 LPDGSVIILGGKGANTVEYY--P-PRNGAVSFPFLADVEDKQMDNLYPYVHLLPNGHLFIFAN-----DKAVMYDYETNK 221 (517)
Q Consensus 150 L~dG~v~vvGG~~~~~~E~y--P-~~~~w~~~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~Gg-----~~~~~ydp~t~~ 221 (517)
.+||+.++..........+| . .......+... ..........+||+.+++.. ..+.++|..+++
T Consensus 295 SPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~--------~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~ 366 (429)
T PRK03629 295 FPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWE--------GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG 366 (429)
T ss_pred CCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecC--------CCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCC
Confidence 67998665543322234555 2 22222221110 00111245578998666643 246778998887
Q ss_pred EE
Q 044265 222 IA 223 (517)
Q Consensus 222 w~ 223 (517)
+.
T Consensus 367 ~~ 368 (429)
T PRK03629 367 VQ 368 (429)
T ss_pred eE
Confidence 76
No 103
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=87.53 E-value=26 Score=33.10 Aligned_cols=132 Identities=20% Similarity=0.219 Sum_probs=68.8
Q ss_pred eEEEEECCCCC--eE-EccccCC-CcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccCcCc--
Q 044265 70 HSAILDLQTNQ--IR-PLMILTD-TWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVNGRW-- 143 (517)
Q Consensus 70 ~~~~yDp~t~~--w~-~l~~~~~-~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~-- 143 (517)
....+|..+++ |+ ....... ..+.......++..++++.. ...+..+|++++ ...|... . ..++.
T Consensus 87 ~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~l~~~d~~tG--~~~w~~~--~--~~~~~~~ 157 (238)
T PF13360_consen 87 SLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS---SGKLVALDPKTG--KLLWKYP--V--GEPRGSS 157 (238)
T ss_dssp EEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET---CSEEEEEETTTT--EEEEEEE--S--STT-SS-
T ss_pred eeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec---cCcEEEEecCCC--cEEEEee--c--CCCCCCc
Confidence 57788988877 66 3333222 22233333334554455443 257899999854 4568653 2 22221
Q ss_pred -------cceeEEcCCCcEEEEcCCCCCceEEeCCCCC--ceeccchhhccccccCCCCceEEEccCCcEEEEE-CCceE
Q 044265 144 -------YGTDQILPDGSVIILGGKGANTVEYYPPRNG--AVSFPFLADVEDKQMDNLYPYVHLLPNGHLFIFA-NDKAV 213 (517)
Q Consensus 144 -------~~s~~~L~dG~v~vvGG~~~~~~E~yP~~~~--w~~~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~G-g~~~~ 213 (517)
..+..++.+|+||+..+... .+.+-..+.+ |. .+ +.. ........++.||+.. ...+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~v~~~~~~g~-~~~~d~~tg~~~w~-~~-~~~---------~~~~~~~~~~~l~~~~~~~~l~ 225 (238)
T PF13360_consen 158 PISSFSDINGSPVISDGRVYVSSGDGR-VVAVDLATGEKLWS-KP-ISG---------IYSLPSVDGGTLYVTSSDGRLY 225 (238)
T ss_dssp -EEEETTEEEEEECCTTEEEEECCTSS-EEEEETTTTEEEEE-EC-SS----------ECECEECCCTEEEEEETTTEEE
T ss_pred ceeeecccccceEEECCEEEEEcCCCe-EEEEECCCCCEEEE-ec-CCC---------ccCCceeeCCEEEEEeCCCEEE
Confidence 12445555788888876542 2222222222 52 22 111 1111344567777776 46788
Q ss_pred EEeCCCCeE
Q 044265 214 MYDYETNKI 222 (517)
Q Consensus 214 ~ydp~t~~w 222 (517)
++|.++++.
T Consensus 226 ~~d~~tG~~ 234 (238)
T PF13360_consen 226 ALDLKTGKV 234 (238)
T ss_dssp EEETTTTEE
T ss_pred EEECCCCCE
Confidence 999999864
No 104
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=86.78 E-value=9.4 Score=36.68 Aligned_cols=134 Identities=15% Similarity=0.144 Sum_probs=78.6
Q ss_pred eEEEEECCCCCeEEccccCCCcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccCcCccceeEE
Q 044265 70 HSAILDLQTNQIRPLMILTDTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVNGRWYGTDQI 149 (517)
Q Consensus 70 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~~s~~~ 149 (517)
.+.+||.+|++....--.|..--....+--+..|++.|+++ .++++||-. +.+..++ .-+.+.+-.-++..
T Consensus 82 ~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD---~s~r~wDCR----S~s~ePi--Qildea~D~V~Si~ 152 (307)
T KOG0316|consen 82 AVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFD---SSVRLWDCR----SRSFEPI--QILDEAKDGVSSID 152 (307)
T ss_pred eEEEEEcccCeeeeecccccceeeEEEecCcceEEEecccc---ceeEEEEcc----cCCCCcc--chhhhhcCceeEEE
Confidence 57899999988755433444433344444567788888875 789999987 6676665 45667777777777
Q ss_pred cCCCcEEEEcCCCCCceEEeCCCCCceeccchhhccccccCCCCceEEEccCCcEEEEE--CCceEEEeCCCCeE
Q 044265 150 LPDGSVIILGGKGANTVEYYPPRNGAVSFPFLADVEDKQMDNLYPYVHLLPNGHLFIFA--NDKAVMYDYETNKI 222 (517)
Q Consensus 150 L~dG~v~vvGG~~~~~~E~yP~~~~w~~~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~G--g~~~~~ydp~t~~w 222 (517)
+ .+.- |++|+...++..|....+-.....+. +|.+ .....+||+-..+| +....+.|-.|++-
T Consensus 153 v-~~he-IvaGS~DGtvRtydiR~G~l~sDy~g-----~pit---~vs~s~d~nc~La~~l~stlrLlDk~tGkl 217 (307)
T KOG0316|consen 153 V-AEHE-IVAGSVDGTVRTYDIRKGTLSSDYFG-----HPIT---SVSFSKDGNCSLASSLDSTLRLLDKETGKL 217 (307)
T ss_pred e-cccE-EEeeccCCcEEEEEeecceeehhhcC-----Ccce---eEEecCCCCEEEEeeccceeeecccchhHH
Confidence 7 4444 55666656777772211111111110 0111 23445677655555 34566777776653
No 105
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=86.47 E-value=14 Score=38.77 Aligned_cols=129 Identities=13% Similarity=0.090 Sum_probs=73.6
Q ss_pred eEEEEECCCCCeEEccccC---CCcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccCcCccce
Q 044265 70 HSAILDLQTNQIRPLMILT---DTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVNGRWYGT 146 (517)
Q Consensus 70 ~~~~yDp~t~~w~~l~~~~---~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~~s 146 (517)
....||..+.+.+++..+. ...-..-.+.+++..+++-|.. ..+.+.... +..|... |...---..
T Consensus 281 y~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~---G~I~lLhak----T~eli~s----~KieG~v~~ 349 (514)
T KOG2055|consen 281 YLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNN---GHIHLLHAK----TKELITS----FKIEGVVSD 349 (514)
T ss_pred EEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccC---ceEEeehhh----hhhhhhe----eeeccEEee
Confidence 5678999999998876532 2222223456788888888864 356666666 7778643 433222234
Q ss_pred eEEcCCCcEEEEcCCCCCceEEe-CCCC----CceeccchhhccccccCCCCceEEEccCCcEEEEECCc--eEEEeCCC
Q 044265 147 DQILPDGSVIILGGKGANTVEYY-PPRN----GAVSFPFLADVEDKQMDNLYPYVHLLPNGHLFIFANDK--AVMYDYET 219 (517)
Q Consensus 147 ~~~L~dG~v~vvGG~~~~~~E~y-P~~~----~w~~~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~Gg~~--~~~ydp~t 219 (517)
.+.-+||+.+++.|..+ .+.+| -..+ .|..-..+.. -..+..++|..|+.|..+ +-+||..+
T Consensus 350 ~~fsSdsk~l~~~~~~G-eV~v~nl~~~~~~~rf~D~G~v~g----------ts~~~S~ng~ylA~GS~~GiVNIYd~~s 418 (514)
T KOG2055|consen 350 FTFSSDSKELLASGGTG-EVYVWNLRQNSCLHRFVDDGSVHG----------TSLCISLNGSYLATGSDSGIVNIYDGNS 418 (514)
T ss_pred EEEecCCcEEEEEcCCc-eEEEEecCCcceEEEEeecCccce----------eeeeecCCCceEEeccCcceEEEeccch
Confidence 45557887766655433 33444 3322 2221111111 123445799989888754 67888665
Q ss_pred C
Q 044265 220 N 220 (517)
Q Consensus 220 ~ 220 (517)
-
T Consensus 419 ~ 419 (514)
T KOG2055|consen 419 C 419 (514)
T ss_pred h
Confidence 3
No 106
>PRK04792 tolB translocation protein TolB; Provisional
Probab=85.52 E-value=53 Score=35.02 Aligned_cols=137 Identities=15% Similarity=0.146 Sum_probs=73.1
Q ss_pred eEEEEECCCCCeEEccccCCCcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccCcCccceeEE
Q 044265 70 HSAILDLQTNQIRPLMILTDTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVNGRWYGTDQI 149 (517)
Q Consensus 70 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~~s~~~ 149 (517)
...++|+.+++.+.+...... -......+||+-+++-...++...+.++|.. +.+..++ ..- .-.....+.
T Consensus 243 ~L~~~dl~tg~~~~lt~~~g~-~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~----tg~~~~l--t~~--~~~~~~p~w 313 (448)
T PRK04792 243 EIFVQDIYTQVREKVTSFPGI-NGAPRFSPDGKKLALVLSKDGQPEIYVVDIA----TKALTRI--TRH--RAIDTEPSW 313 (448)
T ss_pred EEEEEECCCCCeEEecCCCCC-cCCeeECCCCCEEEEEEeCCCCeEEEEEECC----CCCeEEC--ccC--CCCccceEE
Confidence 577889988887766543221 1234567899855543333344678888987 5666655 211 111223345
Q ss_pred cCCCcEEEEcCCCCCceEEe---CCCCCceeccchhhccccccCCCCceEEEccCCcEEEEEC-----CceEEEeCCCCe
Q 044265 150 LPDGSVIILGGKGANTVEYY---PPRNGAVSFPFLADVEDKQMDNLYPYVHLLPNGHLFIFAN-----DKAVMYDYETNK 221 (517)
Q Consensus 150 L~dG~v~vvGG~~~~~~E~y---P~~~~w~~~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~Gg-----~~~~~ydp~t~~ 221 (517)
.+||+-+++........++| ..+.++..+.. .. .........+||+.+++.. ....++|..+++
T Consensus 314 SpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~--~g------~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~ 385 (448)
T PRK04792 314 HPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTF--EG------EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGA 385 (448)
T ss_pred CCCCCEEEEEECCCCCceEEEEECCCCCEEEEec--CC------CCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCC
Confidence 57887655543322234555 33444433211 00 0111234578987665543 245667887776
Q ss_pred EE
Q 044265 222 IA 223 (517)
Q Consensus 222 w~ 223 (517)
..
T Consensus 386 ~~ 387 (448)
T PRK04792 386 MQ 387 (448)
T ss_pred eE
Confidence 54
No 107
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=85.49 E-value=6.5 Score=38.49 Aligned_cols=122 Identities=20% Similarity=0.199 Sum_probs=67.1
Q ss_pred CCCceEEcccC-cccceeEEEEe--eCCEEEEEeccCCCCCCcccCCCcccccccccccccCCcceEEEEECC-CCCeEE
Q 044265 8 LPGTWELVLAD-AGISSMHTAVT--RFNTVVLLDRTNIGPSRKMLGRGRCRLDRNDRALKRDCYAHSAILDLQ-TNQIRP 83 (517)
Q Consensus 8 ~~g~W~~~~~~-~~~~~~h~~ll--~~gkv~~~gg~~~g~~~~~~~~G~~~~~~~~~~~~~d~~~~~~~yDp~-t~~w~~ 83 (517)
..-+|+..... ......+..++ ++|+++++-+.. +. + . ....+... -.+|++
T Consensus 143 ~G~tW~~~~~~~~~~~~~e~~~~~~~dG~l~~~~R~~-~~-------~-~---------------~~~~~S~D~G~TWs~ 198 (275)
T PF13088_consen 143 GGKTWSSGSPIPDGQGECEPSIVELPDGRLLAVFRTE-GN-------D-D---------------IYISRSTDGGRTWSP 198 (275)
T ss_dssp TTSSEEEEEECECSEEEEEEEEEEETTSEEEEEEEEC-SS-------T-E---------------EEEEEESSTTSS-EE
T ss_pred CCceeeccccccccCCcceeEEEECCCCcEEEEEEcc-CC-------C-c---------------EEEEEECCCCCcCCC
Confidence 34459876543 22244455444 799999998753 21 1 0 11122222 356876
Q ss_pred ccc--cCCCcccc-eeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccCcC----ccceeEEcCCCcEE
Q 044265 84 LMI--LTDTWCSS-GQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVNGR----WYGTDQILPDGSVI 156 (517)
Q Consensus 84 l~~--~~~~~c~~-~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R----~~~s~~~L~dG~v~ 156 (517)
... .++..|.. ...+.+|+++++....++...+.++=-.+ ...+|... ..+...- .|++++.++||+|+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~l~~S~D--~g~tW~~~--~~i~~~~~~~~~Y~~~~~~~dg~l~ 274 (275)
T PF13088_consen 199 PQPTNLPNPNSSISLVRLSDGRLLLVYNNPDGRSNLSLYVSED--GGKTWSRP--KTIDDGPNGDSGYPSLTQLPDGKLY 274 (275)
T ss_dssp EEEEECSSCCEEEEEEECTTSEEEEEEECSSTSEEEEEEEECT--TCEEEEEE--EEEEEEE-CCEEEEEEEEEETTEEE
T ss_pred ceecccCcccCCceEEEcCCCCEEEEEECCCCCCceEEEEEeC--CCCcCCcc--EEEeCCCCCcEECCeeEEeCCCcCC
Confidence 432 23322322 23467899998887433334444432221 16789875 3444333 69999999999998
Q ss_pred E
Q 044265 157 I 157 (517)
Q Consensus 157 v 157 (517)
|
T Consensus 275 i 275 (275)
T PF13088_consen 275 I 275 (275)
T ss_dssp E
T ss_pred C
Confidence 6
No 108
>PRK04792 tolB translocation protein TolB; Provisional
Probab=84.99 E-value=58 Score=34.74 Aligned_cols=92 Identities=15% Similarity=0.166 Sum_probs=57.3
Q ss_pred ceEEEEECCCCCeEEccccCCCcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccCcCccceeE
Q 044265 69 AHSAILDLQTNQIRPLMILTDTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVNGRWYGTDQ 148 (517)
Q Consensus 69 ~~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~~s~~ 148 (517)
....++|..+++.+.+..... ........+||+.+++....++...+.++|.. +.++..+ . ....+..+.+
T Consensus 286 ~~Iy~~dl~tg~~~~lt~~~~-~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~----~g~~~~L--t--~~g~~~~~~~ 356 (448)
T PRK04792 286 PEIYVVDIATKALTRITRHRA-IDTEPSWHPDGKSLIFTSERGGKPQIYRVNLA----SGKVSRL--T--FEGEQNLGGS 356 (448)
T ss_pred eEEEEEECCCCCeEECccCCC-CccceEECCCCCEEEEEECCCCCceEEEEECC----CCCEEEE--e--cCCCCCcCee
Confidence 357788999999888764321 22334567899866665443445678888887 5667655 2 1233344456
Q ss_pred EcCCCcEEEEcCCCCCceEEe
Q 044265 149 ILPDGSVIILGGKGANTVEYY 169 (517)
Q Consensus 149 ~L~dG~v~vvGG~~~~~~E~y 169 (517)
..+||+.+++.........+|
T Consensus 357 ~SpDG~~l~~~~~~~g~~~I~ 377 (448)
T PRK04792 357 ITPDGRSMIMVNRTNGKFNIA 377 (448)
T ss_pred ECCCCCEEEEEEecCCceEEE
Confidence 678998877765544444454
No 109
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=84.25 E-value=16 Score=35.50 Aligned_cols=128 Identities=17% Similarity=0.269 Sum_probs=73.6
Q ss_pred CCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccCcCccceeEEcCCCcEEEEcCCCCCceEEe-CCCCCc---
Q 044265 100 DGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVNGRWYGTDQILPDGSVIILGGKGANTVEYY-PPRNGA--- 175 (517)
Q Consensus 100 dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~~s~~~L~dG~v~vvGG~~~~~~E~y-P~~~~w--- 175 (517)
|..|+-. .+ .+.||+||-. +.+=. ..|..+.---++.+.+||+|+.+. .+.++.+| +..=.-
T Consensus 155 D~~iLSS--ad--d~tVRLWD~r----Tgt~v----~sL~~~s~VtSlEvs~dG~ilTia--~gssV~Fwdaksf~~lKs 220 (334)
T KOG0278|consen 155 DKCILSS--AD--DKTVRLWDHR----TGTEV----QSLEFNSPVTSLEVSQDGRILTIA--YGSSVKFWDAKSFGLLKS 220 (334)
T ss_pred CceEEee--cc--CCceEEEEec----cCcEE----EEEecCCCCcceeeccCCCEEEEe--cCceeEEeccccccceee
Confidence 5555544 22 3789999988 44433 345555545667788899999884 22356666 443111
Q ss_pred eeccchhhccccccCCCCceEEEccCCcEEEEECCc--eEEEeCCCCeEEEecCCCCCCCCCCCCCCceeeeecccCccc
Q 044265 176 VSFPFLADVEDKQMDNLYPYVHLLPNGHLFIFANDK--AVMYDYETNKIAREYPPLDGGPRNYPSAGSSAMLALEGDFAT 253 (517)
Q Consensus 176 ~~~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~Gg~~--~~~ydp~t~~w~~~~p~~p~~~r~~~~~g~~v~l~~~~~~~~ 253 (517)
..+|. +. ..+.+-|+-.+||.||.. +..||..|+.-.... ..+ ...| --+|-+.+ +
T Consensus 221 ~k~P~----------nV-~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~--nkg--h~gp--VhcVrFSP-----d 278 (334)
T KOG0278|consen 221 YKMPC----------NV-ESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY--NKG--HFGP--VHCVRFSP-----D 278 (334)
T ss_pred ccCcc----------cc-ccccccCCCceEEecCcceEEEEEeccCCceeeec--ccC--CCCc--eEEEEECC-----C
Confidence 12221 11 135566788999999986 456788888654211 011 0111 11333332 8
Q ss_pred cEEEEEcCCc
Q 044265 254 AVIVVCGGAQ 263 (517)
Q Consensus 254 gkI~v~GG~~ 263 (517)
|++|..|-.+
T Consensus 279 GE~yAsGSED 288 (334)
T KOG0278|consen 279 GELYASGSED 288 (334)
T ss_pred CceeeccCCC
Confidence 9999999876
No 110
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=84.23 E-value=12 Score=36.60 Aligned_cols=130 Identities=18% Similarity=0.192 Sum_probs=72.2
Q ss_pred EEEE-CCCCCeEEccccC-C-Cccccee-ecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccCcCcccee
Q 044265 72 AILD-LQTNQIRPLMILT-D-TWCSSGQ-ILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVNGRWYGTD 147 (517)
Q Consensus 72 ~~yD-p~t~~w~~l~~~~-~-~~c~~~~-~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~~s~ 147 (517)
..|. -.-.+|....... . ..|.... .+.||+|+++--.. ....+.++--. +...+|.+..+..++........
T Consensus 137 ~~~S~D~G~tW~~~~~~~~~~~~~e~~~~~~~dG~l~~~~R~~-~~~~~~~~~S~--D~G~TWs~~~~~~~~~~~~~~~~ 213 (275)
T PF13088_consen 137 VYYSDDGGKTWSSGSPIPDGQGECEPSIVELPDGRLLAVFRTE-GNDDIYISRST--DGGRTWSPPQPTNLPNPNSSISL 213 (275)
T ss_dssp EEEESSTTSSEEEEEECECSEEEEEEEEEEETTSEEEEEEEEC-SSTEEEEEEES--STTSS-EEEEEEECSSCCEEEEE
T ss_pred EEEeCCCCceeeccccccccCCcceeEEEECCCCcEEEEEEcc-CCCcEEEEEEC--CCCCcCCCceecccCcccCCceE
Confidence 3344 4445698776542 2 3444333 35899999886432 11223322222 22678987522355666666667
Q ss_pred EEcCCCcEEEEcCCCC--CceEEe--CC-CCCceeccchhhccccccCCCCceEEEccCCcEEE
Q 044265 148 QILPDGSVIILGGKGA--NTVEYY--PP-RNGAVSFPFLADVEDKQMDNLYPYVHLLPNGHLFI 206 (517)
Q Consensus 148 ~~L~dG~v~vvGG~~~--~~~E~y--P~-~~~w~~~~~l~~t~~~~~~~~yp~~~~~~~G~iyv 206 (517)
..+++|+++++..... ..+.++ .. ..+|.....+.... .....||.+..+.||+|+|
T Consensus 214 ~~~~~g~~~~~~~~~~~r~~l~l~~S~D~g~tW~~~~~i~~~~--~~~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 214 VRLSDGRLLLVYNNPDGRSNLSLYVSEDGGKTWSRPKTIDDGP--NGDSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp EECTTSEEEEEEECSSTSEEEEEEEECTTCEEEEEEEEEEEEE---CCEEEEEEEEEETTEEEE
T ss_pred EEcCCCCEEEEEECCCCCCceEEEEEeCCCCcCCccEEEeCCC--CCcEECCeeEEeCCCcCCC
Confidence 7788999999988422 234444 22 45676332222111 1124589999999999986
No 111
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=84.03 E-value=33 Score=36.09 Aligned_cols=138 Identities=13% Similarity=0.246 Sum_probs=74.4
Q ss_pred eeecCCCc-EEEecCCCCCCCeEEEecCCCCCCCCceEeccCcccc--CcCccceeEEcCCCcEEEEcCCCCCceEEe-C
Q 044265 95 GQILADGT-VLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELV--NGRWYGTDQILPDGSVIILGGKGANTVEYY-P 170 (517)
Q Consensus 95 ~~~l~dG~-l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~--~~R~~~s~~~L~dG~v~vvGG~~~~~~E~y-P 170 (517)
+.+.++|. .++++|.. +-.+.||.. +.+-+++ .+|. ..+....-.+-+++..+++-|..+. +.+. -
T Consensus 263 a~f~p~G~~~i~~s~rr---ky~ysyDle----~ak~~k~--~~~~g~e~~~~e~FeVShd~~fia~~G~~G~-I~lLha 332 (514)
T KOG2055|consen 263 AEFAPNGHSVIFTSGRR---KYLYSYDLE----TAKVTKL--KPPYGVEEKSMERFEVSHDSNFIAIAGNNGH-IHLLHA 332 (514)
T ss_pred eeecCCCceEEEecccc---eEEEEeecc----ccccccc--cCCCCcccchhheeEecCCCCeEEEcccCce-EEeehh
Confidence 45678998 88888864 667889988 6677666 3332 2233334455578888888886542 2222 2
Q ss_pred CCCCce-eccchhhccccccCCCCceEEEccCCc-EEEEEC-CceEEEeCCCCeEEEecCCCCCCCCCCCCCCceeeeec
Q 044265 171 PRNGAV-SFPFLADVEDKQMDNLYPYVHLLPNGH-LFIFAN-DKAVMYDYETNKIAREYPPLDGGPRNYPSAGSSAMLAL 247 (517)
Q Consensus 171 ~~~~w~-~~~~l~~t~~~~~~~~yp~~~~~~~G~-iyv~Gg-~~~~~ydp~t~~w~~~~p~~p~~~r~~~~~g~~v~l~~ 247 (517)
.++.|. .+.+ .. ..--+.+ ..||+ |+++|+ ..+++||...+...+..-. .+.. .|.+....+
T Consensus 333 kT~eli~s~Ki-eG-------~v~~~~f-sSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D--~G~v----~gts~~~S~ 397 (514)
T KOG2055|consen 333 KTKELITSFKI-EG-------VVSDFTF-SSDSKELLASGGTGEVYVWNLRQNSCLHRFVD--DGSV----HGTSLCISL 397 (514)
T ss_pred hhhhhhheeee-cc-------EEeeEEE-ecCCcEEEEEcCCceEEEEecCCcceEEEEee--cCcc----ceeeeeecC
Confidence 334443 1111 10 0111222 25676 555554 3688889888765543311 1111 133333222
Q ss_pred ccCccccEEEEEcCC
Q 044265 248 EGDFATAVIVVCGGA 262 (517)
Q Consensus 248 ~~~~~~gkI~v~GG~ 262 (517)
++..+++|-.
T Consensus 398 -----ng~ylA~GS~ 407 (514)
T KOG2055|consen 398 -----NGSYLATGSD 407 (514)
T ss_pred -----CCceEEeccC
Confidence 7887777754
No 112
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=84.00 E-value=28 Score=34.83 Aligned_cols=149 Identities=19% Similarity=0.309 Sum_probs=79.0
Q ss_pred cCCCcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccCcCc----------c------ceeEEc
Q 044265 87 LTDTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVNGRW----------Y------GTDQIL 150 (517)
Q Consensus 87 ~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~----------~------~s~~~L 150 (517)
.|..-|..+++.+||.++.+|+.+ .++.++|.. .--=.+. +.+|...+- | .....-
T Consensus 110 ~HK~~cR~aafs~DG~lvATGsaD---~SIKildve----rmlaks~-~~em~~~~~qa~hPvIRTlYDH~devn~l~FH 181 (430)
T KOG0640|consen 110 SHKSPCRAAAFSPDGSLVATGSAD---ASIKILDVE----RMLAKSK-PKEMISGDTQARHPVIRTLYDHVDEVNDLDFH 181 (430)
T ss_pred ecccceeeeeeCCCCcEEEccCCc---ceEEEeehh----hhhhhcc-hhhhccCCcccCCceEeehhhccCcccceeec
Confidence 356678899999999999999975 678888865 1000000 022222111 1 122233
Q ss_pred CCCcEEEEcCCCCCceEEeCC-CCCce-eccchhhccccccCCCCc--eEEEccCCcEEEEECC--ceEEEeCCCCeEEE
Q 044265 151 PDGSVIILGGKGANTVEYYPP-RNGAV-SFPFLADVEDKQMDNLYP--YVHLLPNGHLFIFAND--KAVMYDYETNKIAR 224 (517)
Q Consensus 151 ~dG~v~vvGG~~~~~~E~yP~-~~~w~-~~~~l~~t~~~~~~~~yp--~~~~~~~G~iyv~Gg~--~~~~ydp~t~~w~~ 224 (517)
|...|++. |....++.+|.- ..... ....++++ +| ....-|.|...++|-. ...+||..|-+-.
T Consensus 182 Pre~ILiS-~srD~tvKlFDfsK~saKrA~K~~qd~--------~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcf- 251 (430)
T KOG0640|consen 182 PRETILIS-GSRDNTVKLFDFSKTSAKRAFKVFQDT--------EPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCF- 251 (430)
T ss_pred chhheEEe-ccCCCeEEEEecccHHHHHHHHHhhcc--------ceeeeEeecCCCceEEEecCCCceeEEeccceeEe-
Confidence 44556554 444567777711 11110 01111111 11 1233468888888864 5789999987654
Q ss_pred ecCCCCCCCCCCCCCCc--eeeeecccCccccEEEEEcCCc
Q 044265 225 EYPPLDGGPRNYPSAGS--SAMLALEGDFATAVIVVCGGAQ 263 (517)
Q Consensus 225 ~~p~~p~~~r~~~~~g~--~v~l~~~~~~~~gkI~v~GG~~ 263 (517)
++..|.. .+ +++ .|-+. ..+++||.|-.+
T Consensus 252 -vsanPd~---qh-t~ai~~V~Ys-----~t~~lYvTaSkD 282 (430)
T KOG0640|consen 252 -VSANPDD---QH-TGAITQVRYS-----STGSLYVTASKD 282 (430)
T ss_pred -eecCccc---cc-ccceeEEEec-----CCccEEEEeccC
Confidence 3333432 11 122 22222 279999999776
No 113
>PRK03629 tolB translocation protein TolB; Provisional
Probab=83.66 E-value=45 Score=35.33 Aligned_cols=122 Identities=16% Similarity=0.170 Sum_probs=66.3
Q ss_pred eEEEEECCCCCeEEccccCCCcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccCcCccceeEE
Q 044265 70 HSAILDLQTNQIRPLMILTDTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVNGRWYGTDQI 149 (517)
Q Consensus 70 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~~s~~~ 149 (517)
...+||..+++.+++..... ........+||+.+++.....+...+..+|.. +..-..+ .. ........+.
T Consensus 268 ~I~~~d~~tg~~~~lt~~~~-~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~----~g~~~~l--t~--~~~~~~~~~~ 338 (429)
T PRK03629 268 NLYVMDLASGQIRQVTDGRS-NNTEPTWFPDSQNLAYTSDQAGRPQVYKVNIN----GGAPQRI--TW--EGSQNQDADV 338 (429)
T ss_pred EEEEEECCCCCEEEccCCCC-CcCceEECCCCCEEEEEeCCCCCceEEEEECC----CCCeEEe--ec--CCCCccCEEE
Confidence 57788999998888764432 23345678899877665543344567777876 4444333 11 1122234556
Q ss_pred cCCCcEEEEcCCCCCceEE--e-CCCCCceeccchhhccccccCCCCceEEEccCCcEEEEEC
Q 044265 150 LPDGSVIILGGKGANTVEY--Y-PPRNGAVSFPFLADVEDKQMDNLYPYVHLLPNGHLFIFAN 209 (517)
Q Consensus 150 L~dG~v~vvGG~~~~~~E~--y-P~~~~w~~~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~Gg 209 (517)
.+||+.+++........++ + ..+..+..+. ... ... .....+||+..++..
T Consensus 339 SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt---~~~----~~~--~p~~SpDG~~i~~~s 392 (429)
T PRK03629 339 SSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLT---DTF----LDE--TPSIAPNGTMVIYSS 392 (429)
T ss_pred CCCCCEEEEEEccCCCceEEEEECCCCCeEEeC---CCC----CCC--CceECCCCCEEEEEE
Confidence 7899887775544333333 4 4444443221 110 011 123468888766643
No 114
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=83.43 E-value=60 Score=33.72 Aligned_cols=137 Identities=16% Similarity=0.156 Sum_probs=70.7
Q ss_pred eEEEEECCCCCeEEccccCCCcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccCcCccceeEE
Q 044265 70 HSAILDLQTNQIRPLMILTDTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVNGRWYGTDQI 149 (517)
Q Consensus 70 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~~s~~~ 149 (517)
...+||..+++.+.+...... .......+||+-+++....++...+.++|.. +.....+ ... .........
T Consensus 215 ~i~v~d~~~g~~~~~~~~~~~-~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~----~~~~~~l--~~~--~~~~~~~~~ 285 (417)
T TIGR02800 215 EIYVQDLATGQREKVASFPGM-NGAPAFSPDGSKLAVSLSKDGNPDIYVMDLD----GKQLTRL--TNG--PGIDTEPSW 285 (417)
T ss_pred EEEEEECCCCCEEEeecCCCC-ccceEECCCCCEEEEEECCCCCccEEEEECC----CCCEEEC--CCC--CCCCCCEEE
Confidence 577899998877766543221 2234567898755443332344578888887 4555444 111 111112344
Q ss_pred cCCCcEEEEcCCCCCceEEe---CCCCCceeccchhhccccccCCCCceEEEccCCcEEEEECC-----ceEEEeCCCCe
Q 044265 150 LPDGSVIILGGKGANTVEYY---PPRNGAVSFPFLADVEDKQMDNLYPYVHLLPNGHLFIFAND-----KAVMYDYETNK 221 (517)
Q Consensus 150 L~dG~v~vvGG~~~~~~E~y---P~~~~w~~~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~Gg~-----~~~~ydp~t~~ 221 (517)
.+||+-+++.........+| .....+..+.. .. .........+||+.+++... .+.++|..++.
T Consensus 286 s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~--~~------~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~ 357 (417)
T TIGR02800 286 SPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTF--RG------GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGG 357 (417)
T ss_pred CCCCCEEEEEECCCCCceEEEEECCCCCEEEeec--CC------CCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCC
Confidence 56887555443222222344 33333332211 00 01112345678887766542 46788888765
Q ss_pred EE
Q 044265 222 IA 223 (517)
Q Consensus 222 w~ 223 (517)
+.
T Consensus 358 ~~ 359 (417)
T TIGR02800 358 ER 359 (417)
T ss_pred eE
Confidence 54
No 115
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=82.77 E-value=67 Score=33.77 Aligned_cols=121 Identities=13% Similarity=0.010 Sum_probs=65.5
Q ss_pred EEECCCCCeEEccccCCCcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCC-----ceEeccCccccCcC-ccce
Q 044265 73 ILDLQTNQIRPLMILTDTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLC-----DWVELDDVELVNGR-WYGT 146 (517)
Q Consensus 73 ~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~-----~W~~~~~~~m~~~R-~~~s 146 (517)
-+|.-...|+++.......-.+.....||.++++|... .+..-+-. .. +|.+. +++..+ ...+
T Consensus 264 s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G----~l~~S~d~----G~~~~~~~f~~~---~~~~~~~~l~~ 332 (398)
T PLN00033 264 TWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGG----GLYVSKGT----GLTEEDFDFEEA---DIKSRGFGILD 332 (398)
T ss_pred ecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCc----eEEEecCC----CCcccccceeec---ccCCCCcceEE
Confidence 34554445888876655555566677899999988542 12111111 23 45554 233222 2344
Q ss_pred eEEcCCCcEEEEcCCCCCceEEe--CCCCCceeccchhhccccccCCCCceEEEccCCcEEEEECCce
Q 044265 147 DQILPDGSVIILGGKGANTVEYY--PPRNGAVSFPFLADVEDKQMDNLYPYVHLLPNGHLFIFANDKA 212 (517)
Q Consensus 147 ~~~L~dG~v~vvGG~~~~~~E~y--P~~~~w~~~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~Gg~~~ 212 (517)
+....|+.++++|.... .+. ..-++|...+.-.. .+.++| .+....+++.|+.|.+-+
T Consensus 333 v~~~~d~~~~a~G~~G~---v~~s~D~G~tW~~~~~~~~----~~~~ly-~v~f~~~~~g~~~G~~G~ 392 (398)
T PLN00033 333 VGYRSKKEAWAAGGSGI---LLRSTDGGKSWKRDKGADN----IAANLY-SVKFFDDKKGFVLGNDGV 392 (398)
T ss_pred EEEcCCCcEEEEECCCc---EEEeCCCCcceeEccccCC----CCccee-EEEEcCCCceEEEeCCcE
Confidence 55666889988886531 122 23456765321111 123566 344456789999887543
No 116
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=81.32 E-value=19 Score=39.88 Aligned_cols=107 Identities=11% Similarity=0.229 Sum_probs=62.6
Q ss_pred eeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCcccc-CcCccceeEEcCCCcEEEEcCCCCCceEEeCCCC
Q 044265 95 GQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELV-NGRWYGTDQILPDGSVIILGGKGANTVEYYPPRN 173 (517)
Q Consensus 95 ~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~-~~R~~~s~~~L~dG~v~vvGG~~~~~~E~yP~~~ 173 (517)
..+-+|...+.+|+.+ +.|++||..+ ..=..+ +. +.+--.+++.-++|+-++.|+.+ ..+-+|...+
T Consensus 541 v~FHPNs~Y~aTGSsD---~tVRlWDv~~----G~~VRi----F~GH~~~V~al~~Sp~Gr~LaSg~ed-~~I~iWDl~~ 608 (707)
T KOG0263|consen 541 VSFHPNSNYVATGSSD---RTVRLWDVST----GNSVRI----FTGHKGPVTALAFSPCGRYLASGDED-GLIKIWDLAN 608 (707)
T ss_pred EEECCcccccccCCCC---ceEEEEEcCC----CcEEEE----ecCCCCceEEEEEcCCCceEeecccC-CcEEEEEcCC
Confidence 3455777777777543 8899999883 333332 11 23334567777899888887765 3466662221
Q ss_pred CceeccchhhccccccCCCCceEEEccCCcEEEEEC--CceEEEeCCC
Q 044265 174 GAVSFPFLADVEDKQMDNLYPYVHLLPNGHLFIFAN--DKAVMYDYET 219 (517)
Q Consensus 174 ~w~~~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~Gg--~~~~~ydp~t 219 (517)
+-....+...+ ..-| .+....||.|+++|| +++.+||...
T Consensus 609 ~~~v~~l~~Ht-----~ti~-SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 609 GSLVKQLKGHT-----GTIY-SLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred Ccchhhhhccc-----Ccee-EEEEecCCCEEEecCCCCeEEEEEchh
Confidence 11111111111 1112 345567999999987 5788888653
No 117
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=80.66 E-value=80 Score=37.75 Aligned_cols=119 Identities=15% Similarity=0.123 Sum_probs=62.7
Q ss_pred eeecCCCc-EEEecCCCCCCCeEEEecCCCCCCCCceEeccC-------------------ccccCcCccceeEEcCCCc
Q 044265 95 GQILADGT-VLQTGGDLDGYKKIRKFSPCEANGLCDWVELDD-------------------VELVNGRWYGTDQILPDGS 154 (517)
Q Consensus 95 ~~~l~dG~-l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~-------------------~~m~~~R~~~s~~~L~dG~ 154 (517)
.++.+||. |||+-.. .+.+++||+.++ ...+..... ..+..+ .++++-++|.
T Consensus 745 IavspdG~~LYVADs~---n~~Irv~D~~tg--~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P---~Gvavd~dG~ 816 (1057)
T PLN02919 745 ISLSPDLKELYIADSE---SSSIRALDLKTG--GSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP---LGVLCAKDGQ 816 (1057)
T ss_pred EEEeCCCCEEEEEECC---CCeEEEEECCCC--cEEEEEecccccCcccccccCCCCchhhhhccCC---ceeeEeCCCc
Confidence 44567776 8887654 368999998731 111211000 011122 3566677899
Q ss_pred EEEEcCCCCCceEEe-CCCCCceeccchh--hcccc--ccC-CCCce-EEEccCCcEEEEE--CCceEEEeCCCCeE
Q 044265 155 VIILGGKGANTVEYY-PPRNGAVSFPFLA--DVEDK--QMD-NLYPY-VHLLPNGHLFIFA--NDKAVMYDYETNKI 222 (517)
Q Consensus 155 v~vvGG~~~~~~E~y-P~~~~w~~~~~l~--~t~~~--~~~-~~yp~-~~~~~~G~iyv~G--g~~~~~ydp~t~~w 222 (517)
+||.-..+ ..+.+| +.+.......... ...+. ... -..|. +++.++|+|||.- ++.+.++|..+++-
T Consensus 817 LYVADs~N-~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 817 IYVADSYN-HKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred EEEEECCC-CEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 99986543 457777 5543322111000 00000 000 01343 4555799999975 45688999988754
No 118
>PRK02889 tolB translocation protein TolB; Provisional
Probab=79.47 E-value=88 Score=33.03 Aligned_cols=136 Identities=20% Similarity=0.247 Sum_probs=70.4
Q ss_pred eEEEEECCCCCeEEccccCCCcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccCcC-ccceeE
Q 044265 70 HSAILDLQTNQIRPLMILTDTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVNGR-WYGTDQ 148 (517)
Q Consensus 70 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R-~~~s~~ 148 (517)
...+||..+++-+.+...... -......+||+.+++....++...++.+|.. +.....+ .... .....+
T Consensus 221 ~I~~~dl~~g~~~~l~~~~g~-~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~----~~~~~~l-----t~~~~~~~~~~ 290 (427)
T PRK02889 221 VVYVHDLATGRRRVVANFKGS-NSAPAWSPDGRTLAVALSRDGNSQIYTVNAD----GSGLRRL-----TQSSGIDTEPF 290 (427)
T ss_pred EEEEEECCCCCEEEeecCCCC-ccceEECCCCCEEEEEEccCCCceEEEEECC----CCCcEEC-----CCCCCCCcCeE
Confidence 577889988887766533221 1245677899766654333444567777776 3444443 1111 112345
Q ss_pred EcCCCcEEEEcCCCCCceEEe--CC-CCCceeccchhhccccccCCCCceEEEccCCcEEEEECC-----ceEEEeCCCC
Q 044265 149 ILPDGSVIILGGKGANTVEYY--PP-RNGAVSFPFLADVEDKQMDNLYPYVHLLPNGHLFIFAND-----KAVMYDYETN 220 (517)
Q Consensus 149 ~L~dG~v~vvGG~~~~~~E~y--P~-~~~w~~~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~Gg~-----~~~~ydp~t~ 220 (517)
..+||+-+++........++| +. ......... .. ..+. .....+||+..++... .+.+||..++
T Consensus 291 wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~-~g-----~~~~--~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g 362 (427)
T PRK02889 291 FSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTF-TG-----SYNT--SPRISPDGKLLAYISRVGGAFKLYVQDLATG 362 (427)
T ss_pred EcCCCCEEEEEecCCCCcEEEEEECCCCceEEEec-CC-----CCcC--ceEECCCCCEEEEEEccCCcEEEEEEECCCC
Confidence 667998655533222234555 32 222222111 00 0111 2345688876555331 4677888877
Q ss_pred eEE
Q 044265 221 KIA 223 (517)
Q Consensus 221 ~w~ 223 (517)
+..
T Consensus 363 ~~~ 365 (427)
T PRK02889 363 QVT 365 (427)
T ss_pred CeE
Confidence 665
No 119
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=77.97 E-value=7.6 Score=40.13 Aligned_cols=87 Identities=18% Similarity=0.099 Sum_probs=59.8
Q ss_pred EEEEECCCCCeEEccccCCCcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCcccc-CcCccceeEE
Q 044265 71 SAILDLQTNQIRPLMILTDTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELV-NGRWYGTDQI 149 (517)
Q Consensus 71 ~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~-~~R~~~s~~~ 149 (517)
-.+||..|++-.-+...|..--...++-+||.++.+||.+ .-.++||.. +.+-.-. |. .-+--+++..
T Consensus 285 WRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD---~~~RvWDlR----tgr~im~----L~gH~k~I~~V~f 353 (459)
T KOG0272|consen 285 WRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLD---SLGRVWDLR----TGRCIMF----LAGHIKEILSVAF 353 (459)
T ss_pred hhhcccccchhhHhhcccccccceeEecCCCceeeccCcc---chhheeecc----cCcEEEE----ecccccceeeEeE
Confidence 4567777766655556677666667788999999999986 345778887 3332221 11 2234578889
Q ss_pred cCCCcEEEEcCCCCCceEEe
Q 044265 150 LPDGSVIILGGKGANTVEYY 169 (517)
Q Consensus 150 L~dG~v~vvGG~~~~~~E~y 169 (517)
.|+|..++.||.++ ++.+|
T Consensus 354 sPNGy~lATgs~Dn-t~kVW 372 (459)
T KOG0272|consen 354 SPNGYHLATGSSDN-TCKVW 372 (459)
T ss_pred CCCceEEeecCCCC-cEEEe
Confidence 99999999998774 45555
No 120
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=77.45 E-value=84 Score=31.69 Aligned_cols=171 Identities=13% Similarity=0.128 Sum_probs=78.8
Q ss_pred CCCCCceEEccc--CcccceeEEEEeeCCEEEEEeccCCCCCCcccCCCcccccccccccccCCcceEEEEECCCCCeEE
Q 044265 6 ADLPGTWELVLA--DAGISSMHTAVTRFNTVVLLDRTNIGPSRKMLGRGRCRLDRNDRALKRDCYAHSAILDLQTNQIRP 83 (517)
Q Consensus 6 ~~~~g~W~~~~~--~~~~~~~h~~ll~~gkv~~~gg~~~g~~~~~~~~G~~~~~~~~~~~~~d~~~~~~~yDp~t~~w~~ 83 (517)
...-.+|+.+.- ..+-.......+.++.+++.+-. |.. ..=.-.-.+|+.
T Consensus 87 ~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~-----------G~i-----------------y~T~DgG~tW~~ 138 (302)
T PF14870_consen 87 TDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDR-----------GAI-----------------YRTTDGGKTWQA 138 (302)
T ss_dssp SSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT-------------E-----------------EEESSTTSSEEE
T ss_pred cCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCC-----------CcE-----------------EEeCCCCCCeeE
Confidence 345578998742 12233344455577787777532 211 000112356877
Q ss_pred ccccCCCcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccCcCccceeEEcCCCcEEEEcCCCC
Q 044265 84 LMILTDTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVNGRWYGTDQILPDGSVIILGGKGA 163 (517)
Q Consensus 84 l~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~~s~~~L~dG~v~vvGG~~~ 163 (517)
+......--.....+.||++++++-.. +-...+||- ...|... .....|.-.++..-+|+.++++. +..
T Consensus 139 ~~~~~~gs~~~~~r~~dG~~vavs~~G---~~~~s~~~G----~~~w~~~---~r~~~~riq~~gf~~~~~lw~~~-~Gg 207 (302)
T PF14870_consen 139 VVSETSGSINDITRSSDGRYVAVSSRG---NFYSSWDPG----QTTWQPH---NRNSSRRIQSMGFSPDGNLWMLA-RGG 207 (302)
T ss_dssp EE-S----EEEEEE-TTS-EEEEETTS---SEEEEE-TT-----SS-EEE---E--SSS-EEEEEE-TTS-EEEEE-TTT
T ss_pred cccCCcceeEeEEECCCCcEEEEECcc---cEEEEecCC----CccceEE---ccCccceehhceecCCCCEEEEe-CCc
Confidence 654333222335567899999888543 344567886 6789886 45566667888888999998874 221
Q ss_pred CceEEe--C--C-CCCceeccchhhccccccCCCC--ceEEEccCCcEEEEECCceEEEeCC-CCeEEE
Q 044265 164 NTVEYY--P--P-RNGAVSFPFLADVEDKQMDNLY--PYVHLLPNGHLFIFANDKAVMYDYE-TNKIAR 224 (517)
Q Consensus 164 ~~~E~y--P--~-~~~w~~~~~l~~t~~~~~~~~y--p~~~~~~~G~iyv~Gg~~~~~ydp~-t~~w~~ 224 (517)
+++ . . .+.|.. +..... .+.| ..+...+++.+|+.||...-++... -.+|.+
T Consensus 208 ---~~~~s~~~~~~~~w~~-~~~~~~-----~~~~~~ld~a~~~~~~~wa~gg~G~l~~S~DgGktW~~ 267 (302)
T PF14870_consen 208 ---QIQFSDDPDDGETWSE-PIIPIK-----TNGYGILDLAYRPPNEIWAVGGSGTLLVSTDGGKTWQK 267 (302)
T ss_dssp ---EEEEEE-TTEEEEE----B-TTS-----S--S-EEEEEESSSS-EEEEESTT-EEEESSTTSS-EE
T ss_pred ---EEEEccCCCCcccccc-ccCCcc-----cCceeeEEEEecCCCCEEEEeCCccEEEeCCCCccceE
Confidence 222 1 1 123432 111110 1122 2234456899999999866555544 468985
No 121
>PRK05137 tolB translocation protein TolB; Provisional
Probab=77.41 E-value=1e+02 Score=32.59 Aligned_cols=136 Identities=16% Similarity=0.167 Sum_probs=70.7
Q ss_pred eEEEEECCCCCeEEccccCCCcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccCcCccceeEE
Q 044265 70 HSAILDLQTNQIRPLMILTDTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVNGRWYGTDQI 149 (517)
Q Consensus 70 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~~s~~~ 149 (517)
...++|+.+++.+.+...... .......+||+.+++....++...+.++|.. +.....+ ..-. -.......
T Consensus 227 ~i~~~dl~~g~~~~l~~~~g~-~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~----~~~~~~L--t~~~--~~~~~~~~ 297 (435)
T PRK05137 227 RVYLLDLETGQRELVGNFPGM-TFAPRFSPDGRKVVMSLSQGGNTDIYTMDLR----SGTTTRL--TDSP--AIDTSPSY 297 (435)
T ss_pred EEEEEECCCCcEEEeecCCCc-ccCcEECCCCCEEEEEEecCCCceEEEEECC----CCceEEc--cCCC--CccCceeE
Confidence 578899999988777643321 2244567899766544333344678888887 4554444 2111 11122455
Q ss_pred cCCCcEEEEcCCCCCceEEe--CCC-CCceeccchhhccccccCCCCceEEEccCCcEEEEEC-----CceEEEeCCCCe
Q 044265 150 LPDGSVIILGGKGANTVEYY--PPR-NGAVSFPFLADVEDKQMDNLYPYVHLLPNGHLFIFAN-----DKAVMYDYETNK 221 (517)
Q Consensus 150 L~dG~v~vvGG~~~~~~E~y--P~~-~~w~~~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~Gg-----~~~~~ydp~t~~ 221 (517)
.+||+-+++........++| ... .....+.. . ...+......+||+..++.. ....++|+.++.
T Consensus 298 spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~--~------~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~ 369 (435)
T PRK05137 298 SPDGSQIVFESDRSGSPQLYVMNADGSNPRRISF--G------GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG 369 (435)
T ss_pred cCCCCEEEEEECCCCCCeEEEEECCCCCeEEeec--C------CCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc
Confidence 67888655543222223444 322 22222111 0 01122244568887665532 246677876654
Q ss_pred E
Q 044265 222 I 222 (517)
Q Consensus 222 w 222 (517)
.
T Consensus 370 ~ 370 (435)
T PRK05137 370 E 370 (435)
T ss_pred e
Confidence 4
No 122
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=77.31 E-value=1.3e+02 Score=33.82 Aligned_cols=166 Identities=17% Similarity=0.305 Sum_probs=88.6
Q ss_pred eEEEEECCCCC-eEEccccCCCcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCcccc-CcCcccee
Q 044265 70 HSAILDLQTNQ-IRPLMILTDTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELV-NGRWYGTD 147 (517)
Q Consensus 70 ~~~~yDp~t~~-w~~l~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~-~~R~~~s~ 147 (517)
..-+|+..|.+ .+.++.. .--+..++++++.+++|+.+ ...++||.. +..-.+. .+-. .+-| +.
T Consensus 395 SikiWn~~t~kciRTi~~~---y~l~~~Fvpgd~~Iv~G~k~---Gel~vfdla----S~~l~Et--i~AHdgaIW--si 460 (888)
T KOG0306|consen 395 SIKIWNRDTLKCIRTITCG---YILASKFVPGDRYIVLGTKN---GELQVFDLA----SASLVET--IRAHDGAIW--SI 460 (888)
T ss_pred cEEEEEccCcceeEEeccc---cEEEEEecCCCceEEEeccC---CceEEEEee----hhhhhhh--hhcccccee--ee
Confidence 46678877654 3444332 22234567888888888864 468889987 3333322 1111 1234 46
Q ss_pred EEcCCCcEEEEcCCCCCceEEe--------CCCCCceeccchhhccccccCCCCceEEEccCCcEEEEE--CCceEEEeC
Q 044265 148 QILPDGSVIILGGKGANTVEYY--------PPRNGAVSFPFLADVEDKQMDNLYPYVHLLPNGHLFIFA--NDKAVMYDY 217 (517)
Q Consensus 148 ~~L~dG~v~vvGG~~~~~~E~y--------P~~~~w~~~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~G--g~~~~~ydp 217 (517)
...+||+=++.||.+ .++.+| |.+.+ ..+... +++-..-..---.+.+.|||++.++| ++.+-+|=.
T Consensus 461 ~~~pD~~g~vT~saD-ktVkfWdf~l~~~~~gt~~-k~lsl~-~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyfl 537 (888)
T KOG0306|consen 461 SLSPDNKGFVTGSAD-KTVKFWDFKLVVSVPGTQK-KVLSLK-HTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFL 537 (888)
T ss_pred eecCCCCceEEecCC-cEEEEEeEEEEeccCcccc-eeeeec-cceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEe
Confidence 678899999999976 355554 11110 011111 11111000111235667899999998 577777766
Q ss_pred CCCeEEEecCCCCCCCCCCCCCCceeeeecccCccccEEEEEcCCcC
Q 044265 218 ETNKIAREYPPLDGGPRNYPSAGSSAMLALEGDFATAVIVVCGGAQF 264 (517)
Q Consensus 218 ~t~~w~~~~p~~p~~~r~~~~~g~~v~l~~~~~~~~gkI~v~GG~~~ 264 (517)
.+-+..-. +-+. ..| .-.| .+ -++.++++.|+.++
T Consensus 538 DtlKFfls---LYGH--kLP---V~sm-DI---S~DSklivTgSADK 572 (888)
T KOG0306|consen 538 DTLKFFLS---LYGH--KLP---VLSM-DI---SPDSKLIVTGSADK 572 (888)
T ss_pred cceeeeee---eccc--ccc---eeEE-ec---cCCcCeEEeccCCC
Confidence 66554311 1111 111 1111 11 13899999999874
No 123
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=76.18 E-value=47 Score=33.45 Aligned_cols=159 Identities=16% Similarity=0.174 Sum_probs=76.5
Q ss_pred EEEcc-CCcEEEEE---CCceEEEeCCCCeEEEecCCCCCCCCCCCCCCceeeeecccCccccEEEEEcCCcCCcccccC
Q 044265 196 VHLLP-NGHLFIFA---NDKAVMYDYETNKIAREYPPLDGGPRNYPSAGSSAMLALEGDFATAVIVVCGGAQFGAFIQRS 271 (517)
Q Consensus 196 ~~~~~-~G~iyv~G---g~~~~~ydp~t~~w~~~~p~~p~~~r~~~~~g~~v~l~~~~~~~~gkI~v~GG~~~~~~~~~~ 271 (517)
++..+ ++.+.+|+ |.-..+||+.+++-...+.+ +. .|.+- |-++..+ +|+.+..-=.+ +.
T Consensus 10 ~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a-~~-gRHFy--GHg~fs~------dG~~LytTEnd---~~--- 73 (305)
T PF07433_consen 10 VAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWA-PP-GRHFY--GHGVFSP------DGRLLYTTEND---YE--- 73 (305)
T ss_pred eeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcC-CC-CCEEe--cCEEEcC------CCCEEEEeccc---cC---
Confidence 44455 56677777 45678999999876655544 22 34433 5565544 56655442211 10
Q ss_pred CCCCCCCceeEEEecCCCCCceec-CCC-cceeeeeeEEecCC-cEEEEcCccCCCCCcccC---CCC-ccccEEEeCCC
Q 044265 272 TDTPAHGSCGRIIATSADPTWEME-DMP-FGRIMGDMVMLPTG-DVLIINGAQAGTQGFEMA---SNP-CLFPVLYRPTQ 344 (517)
Q Consensus 272 ~~~~a~~s~~~id~~~~~~~W~~~-~m~-~~R~~~~~v~lpdG-~v~v~GG~~~g~~g~~~~---~~~-~~~~e~YdP~t 344 (517)
.....+.+||.. ..++.. ..+ .+-.-|....++|| ++.|.+|.-..-..++.. -+. -.+..+-|+.+
T Consensus 74 ---~g~G~IgVyd~~---~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~s 147 (305)
T PF07433_consen 74 ---TGRGVIGVYDAA---RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARS 147 (305)
T ss_pred ---CCcEEEEEEECc---CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCC
Confidence 111223334432 344443 333 34445677888999 566665532111000000 000 11234446776
Q ss_pred CC-CceeccCCCCCccccccceeeecCCCcEEEec
Q 044265 345 PA-GLRFMTLNPGTIPRMYHSTANLLPDGRVLIAG 378 (517)
Q Consensus 345 ~~-g~~W~~~~~~~~~R~yhs~a~ll~dG~V~v~G 378 (517)
.+ -++|+.-..+..--.-| -.+-.||+|+++.
T Consensus 148 G~ll~q~~Lp~~~~~lSiRH--La~~~~G~V~~a~ 180 (305)
T PF07433_consen 148 GALLEQVELPPDLHQLSIRH--LAVDGDGTVAFAM 180 (305)
T ss_pred CceeeeeecCccccccceee--EEecCCCcEEEEE
Confidence 62 12454323333222334 2235788888765
No 124
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=75.13 E-value=17 Score=40.39 Aligned_cols=88 Identities=15% Similarity=0.135 Sum_probs=60.9
Q ss_pred eEEEEECCCCCeEEccccCCCcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccCcCc-cceeE
Q 044265 70 HSAILDLQTNQIRPLMILTDTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVNGRW-YGTDQ 148 (517)
Q Consensus 70 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~-~~s~~ 148 (517)
.+.+||..++.-..+-..|...-.+.++.++|+.++.|+.+ ..+.+||.. +.+- + ..|..... -.++.
T Consensus 558 tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed---~~I~iWDl~----~~~~--v--~~l~~Ht~ti~Sls 626 (707)
T KOG0263|consen 558 TVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDED---GLIKIWDLA----NGSL--V--KQLKGHTGTIYSLS 626 (707)
T ss_pred eEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccC---CcEEEEEcC----CCcc--h--hhhhcccCceeEEE
Confidence 58999999988877766666666667778899999999875 578899987 3221 1 22322221 23444
Q ss_pred EcCCCcEEEEcCCCCCceEEe
Q 044265 149 ILPDGSVIILGGKGANTVEYY 169 (517)
Q Consensus 149 ~L~dG~v~vvGG~~~~~~E~y 169 (517)
.-.||.|+|+||.++ ++.+|
T Consensus 627 FS~dg~vLasgg~Dn-sV~lW 646 (707)
T KOG0263|consen 627 FSRDGNVLASGGADN-SVRLW 646 (707)
T ss_pred EecCCCEEEecCCCC-eEEEE
Confidence 455999999999874 55555
No 125
>PRK00178 tolB translocation protein TolB; Provisional
Probab=74.25 E-value=1.2e+02 Score=31.86 Aligned_cols=85 Identities=15% Similarity=0.149 Sum_probs=51.0
Q ss_pred ceEEEEECCCCCeEEccccCCCcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccCcCccceeE
Q 044265 69 AHSAILDLQTNQIRPLMILTDTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVNGRWYGTDQ 148 (517)
Q Consensus 69 ~~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~~s~~ 148 (517)
....++|..+++.+.+..... ........+||+-+++.....+...+.++|.. +.++..+ . ...+......
T Consensus 267 ~~Iy~~d~~~~~~~~lt~~~~-~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~----~g~~~~l--t--~~~~~~~~~~ 337 (430)
T PRK00178 267 PEIYVMDLASRQLSRVTNHPA-IDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVN----GGRAERV--T--FVGNYNARPR 337 (430)
T ss_pred ceEEEEECCCCCeEEcccCCC-CcCCeEECCCCCEEEEEECCCCCceEEEEECC----CCCEEEe--e--cCCCCccceE
Confidence 356778999999887754221 12234567898866655443445678888877 5566554 2 1123333345
Q ss_pred EcCCCcEEEEcCCC
Q 044265 149 ILPDGSVIILGGKG 162 (517)
Q Consensus 149 ~L~dG~v~vvGG~~ 162 (517)
..+||+.+++....
T Consensus 338 ~Spdg~~i~~~~~~ 351 (430)
T PRK00178 338 LSADGKTLVMVHRQ 351 (430)
T ss_pred ECCCCCEEEEEEcc
Confidence 56788877665443
No 126
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=74.15 E-value=1e+02 Score=30.93 Aligned_cols=148 Identities=16% Similarity=0.245 Sum_probs=72.9
Q ss_pred cccCCcceEEEEECCCCCeEEccc-cCCCcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCc-eEeccCccccC
Q 044265 63 LKRDCYAHSAILDLQTNQIRPLMI-LTDTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCD-WVELDDVELVN 140 (517)
Q Consensus 63 ~~~d~~~~~~~yDp~t~~w~~l~~-~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~-W~~~~~~~m~~ 140 (517)
+.+|. .+.+|||....-.-... ....+| ....|..+|+|+.+ +.+.+||..+ +. -.+.-+..+..
T Consensus 112 gsWD~--~ik~wD~R~~~~~~~~d~~kkVy~----~~v~g~~LvVg~~~---r~v~iyDLRn----~~~~~q~reS~lky 178 (323)
T KOG1036|consen 112 GSWDK--TIKFWDPRNKVVVGTFDQGKKVYC----MDVSGNRLVVGTSD---RKVLIYDLRN----LDEPFQRRESSLKY 178 (323)
T ss_pred cccCc--cEEEEeccccccccccccCceEEE----EeccCCEEEEeecC---ceEEEEEccc----ccchhhhcccccee
Confidence 44443 47888887522111111 112233 34567888888764 7899999873 22 11100123332
Q ss_pred c-CccceeEEcCCCcEEEEcCCCCC-ceEEe-CCC-CCceeccchhhc-cccccCCCCceEEE--ccCCcEEEEECCc--
Q 044265 141 G-RWYGTDQILPDGSVIILGGKGAN-TVEYY-PPR-NGAVSFPFLADV-EDKQMDNLYPYVHL--LPNGHLFIFANDK-- 211 (517)
Q Consensus 141 ~-R~~~s~~~L~dG~v~vvGG~~~~-~~E~y-P~~-~~w~~~~~l~~t-~~~~~~~~yp~~~~--~~~G~iyv~Gg~~-- 211 (517)
. | +++.+|++.=|++|-.++. .+|++ +.. .+-....+--.+ ....-.-.||-..+ -+--+-|+.||.+
T Consensus 179 qtR---~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~ 255 (323)
T KOG1036|consen 179 QTR---CVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGI 255 (323)
T ss_pred EEE---EEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCce
Confidence 2 3 4566788888898877664 57877 541 111111110000 00000112442222 2233457788865
Q ss_pred eEEEeCCCCeEEEec
Q 044265 212 AVMYDYETNKIAREY 226 (517)
Q Consensus 212 ~~~ydp~t~~w~~~~ 226 (517)
+.+||+.+.+-...+
T Consensus 256 V~~Wd~~~rKrl~q~ 270 (323)
T KOG1036|consen 256 VNIWDLFNRKRLKQL 270 (323)
T ss_pred EEEccCcchhhhhhc
Confidence 678998877644333
No 127
>PRK00178 tolB translocation protein TolB; Provisional
Probab=74.09 E-value=1.2e+02 Score=31.83 Aligned_cols=137 Identities=12% Similarity=0.106 Sum_probs=72.7
Q ss_pred eEEEEECCCCCeEEccccCCCcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccCcCccceeEE
Q 044265 70 HSAILDLQTNQIRPLMILTDTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVNGRWYGTDQI 149 (517)
Q Consensus 70 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~~s~~~ 149 (517)
...++|+.+++.+.+...... -......+||+.+++.-..++...++++|.. +.....+ ..- .........
T Consensus 224 ~l~~~~l~~g~~~~l~~~~g~-~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~----~~~~~~l--t~~--~~~~~~~~~ 294 (430)
T PRK00178 224 RIFVQNLDTGRREQITNFEGL-NGAPAWSPDGSKLAFVLSKDGNPEIYVMDLA----SRQLSRV--TNH--PAIDTEPFW 294 (430)
T ss_pred EEEEEECCCCCEEEccCCCCC-cCCeEECCCCCEEEEEEccCCCceEEEEECC----CCCeEEc--ccC--CCCcCCeEE
Confidence 577889999888877643221 1234567899866654333344678888988 5666655 211 111223345
Q ss_pred cCCCcEEEEcCCCCCceEEe---CCCCCceeccchhhccccccCCCCceEEEccCCcEEEEEC-----CceEEEeCCCCe
Q 044265 150 LPDGSVIILGGKGANTVEYY---PPRNGAVSFPFLADVEDKQMDNLYPYVHLLPNGHLFIFAN-----DKAVMYDYETNK 221 (517)
Q Consensus 150 L~dG~v~vvGG~~~~~~E~y---P~~~~w~~~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~Gg-----~~~~~ydp~t~~ 221 (517)
.+||+-+++.........+| ..+.++..+... . .........+||+..++.. ....++|..+++
T Consensus 295 spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~-~-------~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~ 366 (430)
T PRK00178 295 GKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFV-G-------NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGS 366 (430)
T ss_pred CCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC-C-------CCccceEECCCCCEEEEEEccCCceEEEEEECCCCC
Confidence 67887554443222233444 333333322110 0 0111234567887655543 246678888877
Q ss_pred EE
Q 044265 222 IA 223 (517)
Q Consensus 222 w~ 223 (517)
..
T Consensus 367 ~~ 368 (430)
T PRK00178 367 VR 368 (430)
T ss_pred EE
Confidence 65
No 128
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=73.94 E-value=1.3e+02 Score=32.32 Aligned_cols=130 Identities=11% Similarity=0.067 Sum_probs=69.5
Q ss_pred eEEEEECCCCCeEEccccCCCcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccC-cCccceeE
Q 044265 70 HSAILDLQTNQIRPLMILTDTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVN-GRWYGTDQ 148 (517)
Q Consensus 70 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~-~R~~~s~~ 148 (517)
.+.+|+-.++..+.+-....--..+.....+|..+++|=.. ..+++||.. +++=+ ..|.. ...+-++.
T Consensus 198 ~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~---g~v~iwD~~----~~k~~----~~~~~~h~~rvg~l 266 (484)
T KOG0305|consen 198 SVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSD---GTVQIWDVK----EQKKT----RTLRGSHASRVGSL 266 (484)
T ss_pred eEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecC---CeEEEEehh----hcccc----ccccCCcCceeEEE
Confidence 46777777777776655421111223445689999998543 579999987 33322 23433 22233344
Q ss_pred EcCCCcEEEEcCCCCCceEEe--CCCCCceeccchhhccccccCCCCceEEEccCCcEEEEECCc--eEEEeCCC
Q 044265 149 ILPDGSVIILGGKGANTVEYY--PPRNGAVSFPFLADVEDKQMDNLYPYVHLLPNGHLFIFANDK--AVMYDYET 219 (517)
Q Consensus 149 ~L~dG~v~vvGG~~~~~~E~y--P~~~~w~~~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~Gg~~--~~~ydp~t 219 (517)
.- ++.++..|..+.. +-.+ ...+.- ...+..-+ ..-......+|++.++.||++ +.+||...
T Consensus 267 aW-~~~~lssGsr~~~-I~~~dvR~~~~~--~~~~~~H~-----qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~ 332 (484)
T KOG0305|consen 267 AW-NSSVLSSGSRDGK-ILNHDVRISQHV--VSTLQGHR-----QEVCGLKWSPDGNQLASGGNDNVVFIWDGLS 332 (484)
T ss_pred ec-cCceEEEecCCCc-EEEEEEecchhh--hhhhhccc-----ceeeeeEECCCCCeeccCCCccceEeccCCC
Confidence 44 6788888877642 2222 111000 00011000 011123445799999999964 66777633
No 129
>PRK04922 tolB translocation protein TolB; Provisional
Probab=73.39 E-value=1.3e+02 Score=31.82 Aligned_cols=137 Identities=17% Similarity=0.173 Sum_probs=72.2
Q ss_pred eEEEEECCCCCeEEccccCCCcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccCcCccceeEE
Q 044265 70 HSAILDLQTNQIRPLMILTDTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVNGRWYGTDQI 149 (517)
Q Consensus 70 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~~s~~~ 149 (517)
...++|..+++.+.+...... .......+||+.+++....++...+.++|.. +....++ ..- .......+.
T Consensus 229 ~l~~~dl~~g~~~~l~~~~g~-~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~----~g~~~~l--t~~--~~~~~~~~~ 299 (433)
T PRK04922 229 AIYVQDLATGQRELVASFRGI-NGAPSFSPDGRRLALTLSRDGNPEIYVMDLG----SRQLTRL--TNH--FGIDTEPTW 299 (433)
T ss_pred EEEEEECCCCCEEEeccCCCC-ccCceECCCCCEEEEEEeCCCCceEEEEECC----CCCeEEC--ccC--CCCccceEE
Confidence 577889988887776543221 2234667899755544333344678889987 4554444 111 111123456
Q ss_pred cCCCcEEEEcCCCCCceEEe--CC-CCCceeccchhhccccccCCCCceEEEccCCcEEEEEC-----CceEEEeCCCCe
Q 044265 150 LPDGSVIILGGKGANTVEYY--PP-RNGAVSFPFLADVEDKQMDNLYPYVHLLPNGHLFIFAN-----DKAVMYDYETNK 221 (517)
Q Consensus 150 L~dG~v~vvGG~~~~~~E~y--P~-~~~w~~~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~Gg-----~~~~~ydp~t~~ 221 (517)
.+||+-+++.........+| .. ..+...+.. .. .........+||+..++.. ..+.+||..+++
T Consensus 300 spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~-~g-------~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~ 371 (433)
T PRK04922 300 APDGKSIYFTSDRGGRPQIYRVAASGGSAERLTF-QG-------NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGS 371 (433)
T ss_pred CCCCCEEEEEECCCCCceEEEEECCCCCeEEeec-CC-------CCccCEEECCCCCEEEEEECCCCceeEEEEECCCCC
Confidence 67888655543222223444 32 333332211 00 0111245568887655532 246788888777
Q ss_pred EE
Q 044265 222 IA 223 (517)
Q Consensus 222 w~ 223 (517)
..
T Consensus 372 ~~ 373 (433)
T PRK04922 372 VR 373 (433)
T ss_pred eE
Confidence 65
No 130
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=73.08 E-value=77 Score=31.72 Aligned_cols=84 Identities=17% Similarity=0.140 Sum_probs=50.1
Q ss_pred eEEEEECCCCCeEEccccC-CCcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccCcCccceeE
Q 044265 70 HSAILDLQTNQIRPLMILT-DTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVNGRWYGTDQ 148 (517)
Q Consensus 70 ~~~~yDp~t~~w~~l~~~~-~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~~s~~ 148 (517)
.+..||..+++-..+..-. ..+|-.. ...-..+|+||++ +++++|||+ . +-... ..++..+-| ++.
T Consensus 76 ~vr~~Dln~~~~~~igth~~~i~ci~~--~~~~~~vIsgsWD---~~ik~wD~R----~-~~~~~--~~d~~kkVy-~~~ 142 (323)
T KOG1036|consen 76 QVRRYDLNTGNEDQIGTHDEGIRCIEY--SYEVGCVISGSWD---KTIKFWDPR----N-KVVVG--TFDQGKKVY-CMD 142 (323)
T ss_pred eEEEEEecCCcceeeccCCCceEEEEe--eccCCeEEEcccC---ccEEEEecc----c-ccccc--ccccCceEE-EEe
Confidence 5889999988877665422 2234222 2334567899986 789999998 2 22222 234444434 333
Q ss_pred EcCCCcEEEEcCCCCCceEEe
Q 044265 149 ILPDGSVIILGGKGANTVEYY 169 (517)
Q Consensus 149 ~L~dG~v~vvGG~~~~~~E~y 169 (517)
+ .|..+|+|+.+ ..+-+|
T Consensus 143 v--~g~~LvVg~~~-r~v~iy 160 (323)
T KOG1036|consen 143 V--SGNRLVVGTSD-RKVLIY 160 (323)
T ss_pred c--cCCEEEEeecC-ceEEEE
Confidence 3 46677888765 345666
No 131
>PRK05137 tolB translocation protein TolB; Provisional
Probab=72.96 E-value=1.3e+02 Score=31.74 Aligned_cols=84 Identities=17% Similarity=0.153 Sum_probs=50.7
Q ss_pred ceEEEEECCCCCeEEccccCCCcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccCcCccceeE
Q 044265 69 AHSAILDLQTNQIRPLMILTDTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVNGRWYGTDQ 148 (517)
Q Consensus 69 ~~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~~s~~ 148 (517)
....++|..+++.+++..... ........+||+.+++.....+...++++|.. +.....+ .. ....+....
T Consensus 270 ~~Iy~~d~~~~~~~~Lt~~~~-~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~----g~~~~~l--t~--~~~~~~~~~ 340 (435)
T PRK05137 270 TDIYTMDLRSGTTTRLTDSPA-IDTSPSYSPDGSQIVFESDRSGSPQLYVMNAD----GSNPRRI--SF--GGGRYSTPV 340 (435)
T ss_pred ceEEEEECCCCceEEccCCCC-ccCceeEcCCCCEEEEEECCCCCCeEEEEECC----CCCeEEe--ec--CCCcccCeE
Confidence 356777999988887764221 12234667899877766544455678888876 4444444 11 122234445
Q ss_pred EcCCCcEEEEcCC
Q 044265 149 ILPDGSVIILGGK 161 (517)
Q Consensus 149 ~L~dG~v~vvGG~ 161 (517)
..+||+.+++...
T Consensus 341 ~SpdG~~ia~~~~ 353 (435)
T PRK05137 341 WSPRGDLIAFTKQ 353 (435)
T ss_pred ECCCCCEEEEEEc
Confidence 6688888776543
No 132
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=72.76 E-value=38 Score=33.76 Aligned_cols=96 Identities=16% Similarity=0.193 Sum_probs=56.1
Q ss_pred CCceEEcccCcccce-e-EEEEeeCCEEEEEeccCCCCCCcccCCCcccccccccccccCCcceEEEEECCCCCeEEccc
Q 044265 9 PGTWELVLADAGISS-M-HTAVTRFNTVVLLDRTNIGPSRKMLGRGRCRLDRNDRALKRDCYAHSAILDLQTNQIRPLMI 86 (517)
Q Consensus 9 ~g~W~~~~~~~~~~~-~-h~~ll~~gkv~~~gg~~~g~~~~~~~~G~~~~~~~~~~~~~d~~~~~~~yDp~t~~w~~l~~ 86 (517)
..+|..+... +.. + ++....+.+||+.|....+ |. .......||.++++|+.+..
T Consensus 25 ~~qW~~~g~~--i~G~V~~l~~~~~~~Llv~G~ft~~--------~~-------------~~~~la~yd~~~~~w~~~~~ 81 (281)
T PF12768_consen 25 NSQWSSPGNG--ISGTVTDLQWASNNQLLVGGNFTLN--------GT-------------NSSNLATYDFKNQTWSSLGG 81 (281)
T ss_pred CCEeecCCCC--ceEEEEEEEEecCCEEEEEEeeEEC--------CC-------------CceeEEEEecCCCeeeecCC
Confidence 5789988643 322 2 2333346777777654321 10 12357899999999998876
Q ss_pred cC-C-Cccccee---ecCCC-cEEEecCCCCCCCeEEEecCCCCCCCCceEec
Q 044265 87 LT-D-TWCSSGQ---ILADG-TVLQTGGDLDGYKKIRKFSPCEANGLCDWVEL 133 (517)
Q Consensus 87 ~~-~-~~c~~~~---~l~dG-~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~ 133 (517)
.. + .--...+ ...|+ ++++.|....+...+..|| ..+|...
T Consensus 82 ~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~d------Gs~W~~i 128 (281)
T PF12768_consen 82 GSSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYD------GSSWSSI 128 (281)
T ss_pred cccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEc------CCceEec
Confidence 32 1 1111111 12244 5777776555667788887 4579887
No 133
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=72.72 E-value=52 Score=34.44 Aligned_cols=97 Identities=12% Similarity=0.112 Sum_probs=57.4
Q ss_pred eEEEEECCCCCeEEccccCCCcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccCcCccceeEE
Q 044265 70 HSAILDLQTNQIRPLMILTDTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVNGRWYGTDQI 149 (517)
Q Consensus 70 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~~s~~~ 149 (517)
.+.+||.++.+-...-..|..--....+.-||..++++-.+ .+|.+||... ....... .+....--.+...
T Consensus 370 ~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add---~~V~lwDLRK---l~n~kt~---~l~~~~~v~s~~f 440 (506)
T KOG0289|consen 370 VVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADD---GSVKLWDLRK---LKNFKTI---QLDEKKEVNSLSF 440 (506)
T ss_pred eEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecC---CeEEEEEehh---hccccee---eccccccceeEEE
Confidence 47789998877322222344334455667799999998654 3599999872 1222222 2333322334444
Q ss_pred cCCCcEEEEcCCCCCceEEe---CCCCCceec
Q 044265 150 LPDGSVIILGGKGANTVEYY---PPRNGAVSF 178 (517)
Q Consensus 150 L~dG~v~vvGG~~~~~~E~y---P~~~~w~~~ 178 (517)
-..|+.++++|.+ +.+| -.+.+|..+
T Consensus 441 D~SGt~L~~~g~~---l~Vy~~~k~~k~W~~~ 469 (506)
T KOG0289|consen 441 DQSGTYLGIAGSD---LQVYICKKKTKSWTEI 469 (506)
T ss_pred cCCCCeEEeecce---eEEEEEecccccceee
Confidence 4468999999743 5555 456788743
No 134
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=72.24 E-value=1.4e+02 Score=31.78 Aligned_cols=39 Identities=18% Similarity=0.212 Sum_probs=24.2
Q ss_pred EEECCCCCeEEccc--cCCCcccc-e--eecCCCcEEEecCCCC
Q 044265 73 ILDLQTNQIRPLMI--LTDTWCSS-G--QILADGTVLQTGGDLD 111 (517)
Q Consensus 73 ~yDp~t~~w~~l~~--~~~~~c~~-~--~~l~dG~l~v~GG~~~ 111 (517)
+++|.-+.|..+.. .....|.+ + +.-.||+||.-|=..+
T Consensus 90 ~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~~ 133 (476)
T COG5184 90 VDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDNDD 133 (476)
T ss_pred ccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccCcc
Confidence 68888888775443 23445551 2 2345899999994433
No 135
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=70.25 E-value=1.3e+02 Score=31.71 Aligned_cols=54 Identities=22% Similarity=0.169 Sum_probs=33.7
Q ss_pred ecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccCcCccceeEEc---CCCcEEEEcCCCC
Q 044265 97 ILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVNGRWYGTDQIL---PDGSVIILGGKGA 163 (517)
Q Consensus 97 ~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~~s~~~L---~dG~v~vvGG~~~ 163 (517)
..++|..++.|+.. .++++|... +..-... ..+.|.+.+.| .||+.|+.||.++
T Consensus 89 s~n~G~~l~ag~i~---g~lYlWels----sG~LL~v------~~aHYQ~ITcL~fs~dgs~iiTgskDg 145 (476)
T KOG0646|consen 89 SSNLGYFLLAGTIS---GNLYLWELS----SGILLNV------LSAHYQSITCLKFSDDGSHIITGSKDG 145 (476)
T ss_pred cCCCceEEEeeccc---CcEEEEEec----cccHHHH------HHhhccceeEEEEeCCCcEEEecCCCc
Confidence 34578888777664 578888776 3322111 13446655543 3899999999775
No 136
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=70.00 E-value=36 Score=33.98 Aligned_cols=59 Identities=15% Similarity=0.169 Sum_probs=36.7
Q ss_pred eEEEEECCCCCeEEccccCCCcccceeecCCCcEEEecCCC--CC--CCeEEEecCCCCCCCCceEec
Q 044265 70 HSAILDLQTNQIRPLMILTDTWCSSGQILADGTVLQTGGDL--DG--YKKIRKFSPCEANGLCDWVEL 133 (517)
Q Consensus 70 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~v~GG~~--~g--~~~v~~ydp~~~~~t~~W~~~ 133 (517)
..-+||+.+.+|..+...-..--. .....++.-+++||.- .+ ...+-.||.. +.+|...
T Consensus 17 ~lC~yd~~~~qW~~~g~~i~G~V~-~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~----~~~w~~~ 79 (281)
T PF12768_consen 17 GLCLYDTDNSQWSSPGNGISGTVT-DLQWASNNQLLVGGNFTLNGTNSSNLATYDFK----NQTWSSL 79 (281)
T ss_pred EEEEEECCCCEeecCCCCceEEEE-EEEEecCCEEEEEEeeEECCCCceeEEEEecC----CCeeeec
Confidence 466899999999987654222111 1222344444445532 12 3567889998 7899887
No 137
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=67.51 E-value=46 Score=34.01 Aligned_cols=87 Identities=17% Similarity=0.223 Sum_probs=55.8
Q ss_pred CCEEEEEeccCCCCCCcccC--CC---cccccccc-c--ccccCCcceEEEEECCCCCeEEccccCCCcccceeecCCCc
Q 044265 31 FNTVVLLDRTNIGPSRKMLG--RG---RCRLDRND-R--ALKRDCYAHSAILDLQTNQIRPLMILTDTWCSSGQILADGT 102 (517)
Q Consensus 31 ~gkv~~~gg~~~g~~~~~~~--~G---~~~~~~~~-~--~~~~d~~~~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~ 102 (517)
+|||+++.... |..+..+- .+ ..+++|+- + ++..|+ .+.+|...++.-.++-..++..|..+-+++||+
T Consensus 127 sG~v~v~~~st-g~~~~~~~~e~~dieWl~WHp~a~illAG~~DG--svWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGK 203 (399)
T KOG0296|consen 127 SGKVLVFKVST-GGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDG--SVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGK 203 (399)
T ss_pred CccEEEEEccc-CceEEEeecccCceEEEEecccccEEEeecCCC--cEEEEECCCcceeeEecCCCCCcccccccCCCc
Confidence 78898888754 32232221 01 12233321 1 333344 466777666666666667889999999999999
Q ss_pred EEEecCCCCCCCeEEEecCCC
Q 044265 103 VLQTGGDLDGYKKIRKFSPCE 123 (517)
Q Consensus 103 l~v~GG~~~g~~~v~~ydp~~ 123 (517)
-++.|=.+ .++++|||++
T Consensus 204 r~~tgy~d---gti~~Wn~kt 221 (399)
T KOG0296|consen 204 RILTGYDD---GTIIVWNPKT 221 (399)
T ss_pred eEEEEecC---ceEEEEecCC
Confidence 99997542 5799999993
No 138
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=65.31 E-value=1.7e+02 Score=30.21 Aligned_cols=91 Identities=16% Similarity=0.176 Sum_probs=55.0
Q ss_pred eEEEEECCCCCeEEccccCCCcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccCcCccceeEE
Q 044265 70 HSAILDLQTNQIRPLMILTDTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVNGRWYGTDQI 149 (517)
Q Consensus 70 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~~s~~~ 149 (517)
...++|..+++.+.+...... -......+||+.+++.....+...+.++|.. +..+..+ . ....+......
T Consensus 259 ~i~~~d~~~~~~~~l~~~~~~-~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~----~~~~~~l--~--~~~~~~~~~~~ 329 (417)
T TIGR02800 259 DIYVMDLDGKQLTRLTNGPGI-DTEPSWSPDGKSIAFTSDRGGSPQIYMMDAD----GGEVRRL--T--FRGGYNASPSW 329 (417)
T ss_pred cEEEEECCCCCEEECCCCCCC-CCCEEECCCCCEEEEEECCCCCceEEEEECC----CCCEEEe--e--cCCCCccCeEE
Confidence 577889998888777543211 1123456788876665443344578888887 5566554 1 12233344556
Q ss_pred cCCCcEEEEcCCCCCceEEe
Q 044265 150 LPDGSVIILGGKGANTVEYY 169 (517)
Q Consensus 150 L~dG~v~vvGG~~~~~~E~y 169 (517)
-+||+.+++.........+|
T Consensus 330 spdg~~i~~~~~~~~~~~i~ 349 (417)
T TIGR02800 330 SPDGDLIAFVHREGGGFNIA 349 (417)
T ss_pred CCCCCEEEEEEccCCceEEE
Confidence 67898888876554444444
No 139
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=64.27 E-value=66 Score=32.92 Aligned_cols=134 Identities=20% Similarity=0.251 Sum_probs=68.8
Q ss_pred eEEEEECCCCCeEEccccCCCccc---------ceeecCCCcEEEecCCCCC---CCeEEEecCCCCCCCCceEeccCcc
Q 044265 70 HSAILDLQTNQIRPLMILTDTWCS---------SGQILADGTVLQTGGDLDG---YKKIRKFSPCEANGLCDWVELDDVE 137 (517)
Q Consensus 70 ~~~~yDp~t~~w~~l~~~~~~~c~---------~~~~l~dG~l~v~GG~~~g---~~~v~~ydp~~~~~t~~W~~~~~~~ 137 (517)
.+.+-|.+.+++...-. .+-|. ..+...||+++.+.=..+| .+..++||+. .+-.... ..
T Consensus 119 SVtVVDl~~~kvv~ei~--~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~----~dp~f~~--~~ 190 (342)
T PF06433_consen 119 SVTVVDLAAKKVVGEID--TPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPD----DDPLFEH--PA 190 (342)
T ss_dssp EEEEEETTTTEEEEEEE--GTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTT----TS-B-S----E
T ss_pred eEEEEECCCCceeeeec--CCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCC----Ccccccc--cc
Confidence 57788888888753211 11121 1234457777665422222 3456789987 4434332 12
Q ss_pred c--cCcCccceeEEcCCCcEEEE--cCCCCC---ceEEe-CC--CCCceeccchhhccccccCCCCceEEEccCCcEEEE
Q 044265 138 L--VNGRWYGTDQILPDGSVIIL--GGKGAN---TVEYY-PP--RNGAVSFPFLADVEDKQMDNLYPYVHLLPNGHLFIF 207 (517)
Q Consensus 138 m--~~~R~~~s~~~L~dG~v~vv--GG~~~~---~~E~y-P~--~~~w~~~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~ 207 (517)
+ ...|+++ .+. +|+||.+ +|.... ..+++ .. ...|... .+...+.--..++||+.
T Consensus 191 ~~~~~~~~~F--~Sy-~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPG------------G~Q~~A~~~~~~rlyvL 255 (342)
T PF06433_consen 191 YSRDGGRLYF--VSY-EGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPG------------GWQLIAYHAASGRLYVL 255 (342)
T ss_dssp EETTTTEEEE--EBT-TSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-------------SSS-EEEETTTTEEEEE
T ss_pred eECCCCeEEE--Eec-CCEEEEEeccCCcccccCcccccCccccccCcCCc------------ceeeeeeccccCeEEEE
Confidence 2 2345554 345 8999984 554311 12222 11 2355422 12222333457889986
Q ss_pred E-----------CCceEEEeCCCCeEEEec
Q 044265 208 A-----------NDKAVMYDYETNKIAREY 226 (517)
Q Consensus 208 G-----------g~~~~~ydp~t~~w~~~~ 226 (517)
- |..+|.||+++.+-...+
T Consensus 256 Mh~g~~gsHKdpgteVWv~D~~t~krv~Ri 285 (342)
T PF06433_consen 256 MHQGGEGSHKDPGTEVWVYDLKTHKRVARI 285 (342)
T ss_dssp EEE--TT-TTS-EEEEEEEETTTTEEEEEE
T ss_pred ecCCCCCCccCCceEEEEEECCCCeEEEEE
Confidence 4 235899999998766544
No 140
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=63.20 E-value=25 Score=34.83 Aligned_cols=88 Identities=20% Similarity=0.157 Sum_probs=55.1
Q ss_pred cccCcccceeEEE-Ee-eCCE--EEEEeccCCCCCCcccCCCcccccccccccccCCcceEEEEECCCCCeEE--ccccC
Q 044265 15 VLADAGISSMHTA-VT-RFNT--VVLLDRTNIGPSRKMLGRGRCRLDRNDRALKRDCYAHSAILDLQTNQIRP--LMILT 88 (517)
Q Consensus 15 ~~~~~~~~~~h~~-ll-~~gk--v~~~gg~~~g~~~~~~~~G~~~~~~~~~~~~~d~~~~~~~yDp~t~~w~~--l~~~~ 88 (517)
+......+..|+. ++ -.|| +++|||...=+ -++..--.+ ..-.||..++.+.|++-+-.+. ++...
T Consensus 81 vGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P------~~qRTTenW--NsVvDC~P~VfLiDleFGC~tah~lpEl~ 152 (337)
T PF03089_consen 81 VGDVPEARYGHTINVVHSRGKTACVLFGGRSYMP------PGQRTTENW--NSVVDCPPQVFLIDLEFGCCTAHTLPELQ 152 (337)
T ss_pred cCCCCcccccceEEEEEECCcEEEEEECCcccCC------ccccchhhc--ceeccCCCeEEEEeccccccccccchhhc
Confidence 3333456666753 32 3566 77888754321 122100001 1224899999999999887764 55677
Q ss_pred CCcccceeecCCCcEEEecCCC
Q 044265 89 DTWCSSGQILADGTVLQTGGDL 110 (517)
Q Consensus 89 ~~~c~~~~~l~dG~l~v~GG~~ 110 (517)
+.+.-+.++.-+..||++||..
T Consensus 153 dG~SFHvslar~D~VYilGGHs 174 (337)
T PF03089_consen 153 DGQSFHVSLARNDCVYILGGHS 174 (337)
T ss_pred CCeEEEEEEecCceEEEEccEE
Confidence 7766566667789999999975
No 141
>cd02849 CGTase_C_term Cgtase (cyclodextrin glycosyltransferase) C-terminus domain. Enzymes such as amylases, cyclomaltodextrinase (CDase), and CGTase degrade starch to smaller oligosaccharides by hydrolyzing the alpha-D-(1,4) linkages between glucose residues present in starch. In the case of CGTases, an additional cyclization reaction is catalyzed yielding mixtures of cyclic oligosaccharides which are referred to as alpha-, beta-, or gamma-cyclodextrins (CDs) (consisting of six, seven, or eight glucoses, respectively). CGTases are characterized as depending on the major product of the cyclization reaction. Besides having similar catalytic site residues, amylases and CGTases contain carbohydrate binding domains that are distant from the active site and which are implicated in attaching the enzyme to raw starch granules and in guiding the amylose chain into the active site. The C-terminus of CGTase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These d
Probab=62.92 E-value=65 Score=25.54 Aligned_cols=74 Identities=23% Similarity=0.232 Sum_probs=45.8
Q ss_pred CCceecC-CceeecCCeEEEEEEecCCceeeEEEEEecCCcccccCcCCcceEEeeecccccCCCCcEEEEEeCCCCCCc
Q 044265 413 RPVIEEI-PETVRYGEAFDVFVTVPLPVVGILEVNLGNAPFATHSFQQGQRLVKITVTPSVPDANGRYRVGCTAPPNGAV 491 (517)
Q Consensus 413 RP~i~~~-p~~~~~g~~~~v~~~~~~~~~~~~~v~l~~~~~~TH~~~~~qR~~~l~~~~~~~~~~~~~~~~v~~P~~~~~ 491 (517)
.|.|.++ |..-..|++++|+-+--+. ...+|.+- + ...++... . ...+++++|..
T Consensus 2 ~P~I~~i~P~~g~~G~~VtI~G~gFg~--~~~~V~~g-----------~---~~a~v~s~---s--dt~I~~~vP~~--- 57 (81)
T cd02849 2 TPLIGHVGPMMGKAGNTVTISGEGFGS--APGTVYFG-----------T---TAATVISW---S--DTRIVVTVPNV--- 57 (81)
T ss_pred CCEEeeEcCCCCCCCCEEEEEEECCCC--CCcEEEEC-----------C---EEeEEEEE---C--CCEEEEEeCCC---
Confidence 4888886 7767789999987553321 11233221 1 22233221 1 25888899953
Q ss_pred CCCcceEEEEEc-CCcCcccE
Q 044265 492 APPGYYMAFVVN-QGVPSVAR 511 (517)
Q Consensus 492 ~ppG~ymlf~~~-~gvPS~a~ 511 (517)
++|.|-++|.. +|.=|.+.
T Consensus 58 -~aG~~~V~V~~~~G~~Sn~~ 77 (81)
T cd02849 58 -PAGNYDVTVKTADGATSNGY 77 (81)
T ss_pred -CCceEEEEEEeCCCcccCcE
Confidence 78999999997 68877654
No 142
>PRK04922 tolB translocation protein TolB; Provisional
Probab=62.77 E-value=2.1e+02 Score=30.21 Aligned_cols=97 Identities=15% Similarity=0.186 Sum_probs=56.3
Q ss_pred eEEEEECCCCCeEEccccCCCcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccCcCccceeEE
Q 044265 70 HSAILDLQTNQIRPLMILTDTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVNGRWYGTDQI 149 (517)
Q Consensus 70 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~~s~~~ 149 (517)
...++|+.+++.+++...... .......+||+.+++.....+...+.++|.. +.++..+ . ...++....+.
T Consensus 273 ~Iy~~d~~~g~~~~lt~~~~~-~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~----~g~~~~l--t--~~g~~~~~~~~ 343 (433)
T PRK04922 273 EIYVMDLGSRQLTRLTNHFGI-DTEPTWAPDGKSIYFTSDRGGRPQIYRVAAS----GGSAERL--T--FQGNYNARASV 343 (433)
T ss_pred eEEEEECCCCCeEECccCCCC-ccceEECCCCCEEEEEECCCCCceEEEEECC----CCCeEEe--e--cCCCCccCEEE
Confidence 577889999988776532211 2234677899877766543444567777876 5556554 1 12233445566
Q ss_pred cCCCcEEEEcCCCCC--ceEEe-CCCCCc
Q 044265 150 LPDGSVIILGGKGAN--TVEYY-PPRNGA 175 (517)
Q Consensus 150 L~dG~v~vvGG~~~~--~~E~y-P~~~~w 175 (517)
-+||+.+++...... .+.+| ..+...
T Consensus 344 SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~ 372 (433)
T PRK04922 344 SPDGKKIAMVHGSGGQYRIAVMDLSTGSV 372 (433)
T ss_pred CCCCCEEEEEECCCCceeEEEEECCCCCe
Confidence 779887766433322 34455 444433
No 143
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=62.62 E-value=1.7e+02 Score=29.09 Aligned_cols=84 Identities=14% Similarity=0.194 Sum_probs=54.0
Q ss_pred eEEEEECCCCCeEEccc-cCCCcccceeecCC--CcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccCcCccce
Q 044265 70 HSAILDLQTNQIRPLMI-LTDTWCSSGQILAD--GTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVNGRWYGT 146 (517)
Q Consensus 70 ~~~~yDp~t~~w~~l~~-~~~~~c~~~~~l~d--G~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~~s 146 (517)
...+||...+.-..+.. .+..|-....+.|+ .-+++.+|.+ +.+.+||.. +++-... -.-+.-.-.+
T Consensus 128 Tiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~D---ktvKvWnl~----~~~l~~~---~~gh~~~v~t 197 (315)
T KOG0279|consen 128 TIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWD---KTVKVWNLR----NCQLRTT---FIGHSGYVNT 197 (315)
T ss_pred eeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCC---ceEEEEccC----Ccchhhc---cccccccEEE
Confidence 35667666555444433 33556556667777 5677777775 789999988 5554321 1223344456
Q ss_pred eEEcCCCcEEEEcCCCC
Q 044265 147 DQILPDGSVIILGGKGA 163 (517)
Q Consensus 147 ~~~L~dG~v~vvGG~~~ 163 (517)
+++-+||.+.+-||.++
T Consensus 198 ~~vSpDGslcasGgkdg 214 (315)
T KOG0279|consen 198 VTVSPDGSLCASGGKDG 214 (315)
T ss_pred EEECCCCCEEecCCCCc
Confidence 77888999999999764
No 144
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=62.08 E-value=44 Score=34.54 Aligned_cols=81 Identities=21% Similarity=0.165 Sum_probs=53.9
Q ss_pred ceEEEEECCCCCeE-EccccCCCcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCcccc-CcCccce
Q 044265 69 AHSAILDLQTNQIR-PLMILTDTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELV-NGRWYGT 146 (517)
Q Consensus 69 ~~~~~yDp~t~~w~-~l~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~-~~R~~~s 146 (517)
..+.+||..|++-. .+. |...|-+..+-.||.++++.-.+ ++++++||. +.+-... . |. ++-.-.-
T Consensus 154 n~v~iWnv~tgeali~l~--hpd~i~S~sfn~dGs~l~TtckD---KkvRv~dpr----~~~~v~e--~-~~heG~k~~R 221 (472)
T KOG0303|consen 154 NTVSIWNVGTGEALITLD--HPDMVYSMSFNRDGSLLCTTCKD---KKVRVIDPR----RGTVVSE--G-VAHEGAKPAR 221 (472)
T ss_pred ceEEEEeccCCceeeecC--CCCeEEEEEeccCCceeeeeccc---ceeEEEcCC----CCcEeee--c-ccccCCCcce
Confidence 36889999888743 333 44456677778899998886543 899999999 4544332 2 33 2222345
Q ss_pred eEEcCCCcEEEEcCC
Q 044265 147 DQILPDGSVIILGGK 161 (517)
Q Consensus 147 ~~~L~dG~v~vvGG~ 161 (517)
+..|.+|+++..|=+
T Consensus 222 aifl~~g~i~tTGfs 236 (472)
T KOG0303|consen 222 AIFLASGKIFTTGFS 236 (472)
T ss_pred eEEeccCceeeeccc
Confidence 678889998777643
No 145
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=61.67 E-value=26 Score=37.29 Aligned_cols=135 Identities=17% Similarity=0.248 Sum_probs=73.6
Q ss_pred eEEEEECCCCC----eEEcccc-CCCcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccC--cC
Q 044265 70 HSAILDLQTNQ----IRPLMIL-TDTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVN--GR 142 (517)
Q Consensus 70 ~~~~yDp~t~~----w~~l~~~-~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~--~R 142 (517)
.+-+||..-.. ...|... .+.+-.+.-+++||+-+++||.. .++.+||..+ -+=.-. +.|.. +-
T Consensus 441 cVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGea---stlsiWDLAa----pTprik--aeltssapa 511 (705)
T KOG0639|consen 441 CVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEA---STLSIWDLAA----PTPRIK--AELTSSAPA 511 (705)
T ss_pred eEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEecccc---ceeeeeeccC----CCcchh--hhcCCcchh
Confidence 46788864321 2234433 45565667789999999999983 6788999873 222111 33443 34
Q ss_pred ccceeEEcCCCcEEEEcCCCCCceEEeCCCCCceeccchhhccccccCCCCceEEEccCCcEEEEEC--CceEEEeCCCC
Q 044265 143 WYGTDQILPDGSVIILGGKGANTVEYYPPRNGAVSFPFLADVEDKQMDNLYPYVHLLPNGHLFIFAN--DKAVMYDYETN 220 (517)
Q Consensus 143 ~~~s~~~L~dG~v~vvGG~~~~~~E~yP~~~~w~~~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~Gg--~~~~~ydp~t~ 220 (517)
+|. .++-+|-+|...-= ....+.+|...|+..+..+ +...| . -....+..||.-...|| +.+.+||.++.
T Consensus 512 CyA-La~spDakvcFscc-sdGnI~vwDLhnq~~Vrqf-qGhtD----G-ascIdis~dGtklWTGGlDntvRcWDlreg 583 (705)
T KOG0639|consen 512 CYA-LAISPDAKVCFSCC-SDGNIAVWDLHNQTLVRQF-QGHTD----G-ASCIDISKDGTKLWTGGLDNTVRCWDLREG 583 (705)
T ss_pred hhh-hhcCCccceeeeec-cCCcEEEEEcccceeeecc-cCCCC----C-ceeEEecCCCceeecCCCccceeehhhhhh
Confidence 443 44445777744332 2234666633333322111 11111 0 01123345787677777 67899998876
Q ss_pred e
Q 044265 221 K 221 (517)
Q Consensus 221 ~ 221 (517)
+
T Consensus 584 r 584 (705)
T KOG0639|consen 584 R 584 (705)
T ss_pred h
Confidence 5
No 146
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=61.62 E-value=1.1e+02 Score=30.93 Aligned_cols=85 Identities=21% Similarity=0.345 Sum_probs=54.7
Q ss_pred eEEEEECCCCCeEEc-ccc-CCCcccceeecCCCcEEEec-CCCC-CCCeEEEecCCCCCCCCceEeccCcccc-CcCcc
Q 044265 70 HSAILDLQTNQIRPL-MIL-TDTWCSSGQILADGTVLQTG-GDLD-GYKKIRKFSPCEANGLCDWVELDDVELV-NGRWY 144 (517)
Q Consensus 70 ~~~~yDp~t~~w~~l-~~~-~~~~c~~~~~l~dG~l~v~G-G~~~-g~~~v~~ydp~~~~~t~~W~~~~~~~m~-~~R~~ 144 (517)
+..+||+.+++-... ... -..|..++++.+||+++.+= ...+ +.-.|-+||.. ...... .+.+ ..-.-
T Consensus 29 ~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~-----~~~~ri--~E~~s~GIGP 101 (305)
T PF07433_consen 29 FALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA-----RGYRRI--GEFPSHGIGP 101 (305)
T ss_pred EEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc-----CCcEEE--eEecCCCcCh
Confidence 578999999987643 333 34678888899999876653 2222 34578899986 344444 3333 23445
Q ss_pred ceeEEcCCCcEEEE--cCC
Q 044265 145 GTDQILPDGSVIIL--GGK 161 (517)
Q Consensus 145 ~s~~~L~dG~v~vv--GG~ 161 (517)
|-+..++||+-+|| ||.
T Consensus 102 Hel~l~pDG~tLvVANGGI 120 (305)
T PF07433_consen 102 HELLLMPDGETLVVANGGI 120 (305)
T ss_pred hhEEEcCCCCEEEEEcCCC
Confidence 66778899966555 564
No 147
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=61.19 E-value=2.2e+02 Score=29.96 Aligned_cols=70 Identities=19% Similarity=0.334 Sum_probs=37.6
Q ss_pred ceecCCCccee-eeeeEEecCCcEEEEcCccCCCCCcccCCCCccccEEEeCCCCCCceeccCCC-CCc-cccccceeee
Q 044265 292 WEMEDMPFGRI-MGDMVMLPTGDVLIINGAQAGTQGFEMASNPCLFPVLYRPTQPAGLRFMTLNP-GTI-PRMYHSTANL 368 (517)
Q Consensus 292 W~~~~m~~~R~-~~~~v~lpdG~v~v~GG~~~g~~g~~~~~~~~~~~e~YdP~t~~g~~W~~~~~-~~~-~R~yhs~a~l 368 (517)
|+..+++..+. ..+.+...|++++++|.. |. +|-. ++.|++|+.... -.+ .-+| + ...
T Consensus 318 f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~--G~--------------v~~s-~D~G~tW~~~~~~~~~~~~ly-~-v~f 378 (398)
T PLN00033 318 FEEADIKSRGFGILDVGYRSKKEAWAAGGS--GI--------------LLRS-TDGGKSWKRDKGADNIAANLY-S-VKF 378 (398)
T ss_pred eeecccCCCCcceEEEEEcCCCcEEEEECC--Cc--------------EEEe-CCCCcceeEccccCCCCccee-E-EEE
Confidence 34334443332 233345568899988764 31 1211 345679998652 222 2344 2 333
Q ss_pred cCCCcEEEecCC
Q 044265 369 LPDGRVLIAGSN 380 (517)
Q Consensus 369 l~dG~V~v~GG~ 380 (517)
..+++.|+.|-+
T Consensus 379 ~~~~~g~~~G~~ 390 (398)
T PLN00033 379 FDDKKGFVLGND 390 (398)
T ss_pred cCCCceEEEeCC
Confidence 577999999854
No 148
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=60.37 E-value=95 Score=30.21 Aligned_cols=49 Identities=14% Similarity=0.195 Sum_probs=31.8
Q ss_pred eEEEEECCCCCeEEccc-cCCCccc-----c--eeecCCCcEEEecCCCCCCCeEEEecCC
Q 044265 70 HSAILDLQTNQIRPLMI-LTDTWCS-----S--GQILADGTVLQTGGDLDGYKKIRKFSPC 122 (517)
Q Consensus 70 ~~~~yDp~t~~w~~l~~-~~~~~c~-----~--~~~l~dG~l~v~GG~~~g~~~v~~ydp~ 122 (517)
.+.+||.+|.+-..+-. ..+.-|. . +++..|..++|.||- .+..+|...
T Consensus 179 tvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgG----p~lslwhLr 235 (325)
T KOG0649|consen 179 TVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGG----PKLSLWHLR 235 (325)
T ss_pred cEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCC----CceeEEecc
Confidence 58899999998776542 2121121 1 456678899999984 455667765
No 149
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=60.30 E-value=42 Score=31.28 Aligned_cols=79 Identities=11% Similarity=0.064 Sum_probs=49.0
Q ss_pred eEEEEECCCCCeEEccccCCCcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccCcCccceeEE
Q 044265 70 HSAILDLQTNQIRPLMILTDTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVNGRWYGTDQI 149 (517)
Q Consensus 70 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~~s~~~ 149 (517)
.+.+||.+......+. ..........++|+.+++||..+....+++||.. ++..+ ....... -..++-
T Consensus 84 ~v~lyd~~~~~i~~~~---~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~------~~~~i--~~~~~~~-~t~~~W 151 (194)
T PF08662_consen 84 KVTLYDVKGKKIFSFG---TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVR------KKKKI--STFEHSD-ATDVEW 151 (194)
T ss_pred ccEEEcCcccEeEeec---CCCceEEEECCCCCEEEEEEccCCCcEEEEEECC------CCEEe--eccccCc-EEEEEE
Confidence 5778888644443332 2223345567999999999976433569999976 23333 2233222 234566
Q ss_pred cCCCcEEEEcC
Q 044265 150 LPDGSVIILGG 160 (517)
Q Consensus 150 L~dG~v~vvGG 160 (517)
-|||+.++...
T Consensus 152 sPdGr~~~ta~ 162 (194)
T PF08662_consen 152 SPDGRYLATAT 162 (194)
T ss_pred cCCCCEEEEEE
Confidence 78999988765
No 150
>PF00868 Transglut_N: Transglutaminase family; InterPro: IPR001102 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) (TGase) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ]. Transglutaminases are widely distributed in various organs, tissues and body fluids. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. There are commonly three domains: N-terminal, middle (IPR013808 from INTERPRO) and C-terminal (IPR013807 from INTERPRO). This entry represents the N-terminal domain found in transglutaminases.; GO: 0018149 peptide cross-linking; PDB: 1L9N_B 1NUF_A 1NUD_A 1NUG_B 1L9M_A 1KV3_C 3S3S_A 2Q3Z_A 3LY6_A 3S3P_A ....
Probab=58.59 E-value=77 Score=27.09 Aligned_cols=75 Identities=24% Similarity=0.329 Sum_probs=34.6
Q ss_pred eeecCCeEEEEEEecCC---ceeeEEEEEecCCcccccCcCCcceEEeeeccccc----------CCCCcEEEEEeCCCC
Q 044265 422 TVRYGEAFDVFVTVPLP---VVGILEVNLGNAPFATHSFQQGQRLVKITVTPSVP----------DANGRYRVGCTAPPN 488 (517)
Q Consensus 422 ~~~~g~~~~v~~~~~~~---~~~~~~v~l~~~~~~TH~~~~~qR~~~l~~~~~~~----------~~~~~~~~~v~~P~~ 488 (517)
.|+.|+.|+|++....+ ..+.+++.+.- | .--+..-+- .+.|++..... ..++.-++.|..|+|
T Consensus 28 VVRRGQ~F~i~l~f~r~~~~~~d~l~l~~~~-G-~~P~~~~gT-~~~~~~~~~~~~~~W~a~v~~~~~~~~tv~V~spa~ 104 (118)
T PF00868_consen 28 VVRRGQPFTITLRFNRPFDPSKDQLSLEFET-G-PNPSESKGT-KVVFPVSSSLDSSSWSARVESQDGNSVTVSVTSPAN 104 (118)
T ss_dssp EEETTSEEEEEEEESSS--TTTEEEEEEEEE-S-SS--TTTTS-EEEEEECSSS-TSSSEEEEEEEETTEEEEEEE--TT
T ss_pred EEECCCEEEEEEEEcCCcCCCCcEEEEEEEE-e-cccccCCCc-EEEEEEccCCCCCCEEEEEEecCCCEEEEEEECCCC
Confidence 37789999888765432 22333333321 1 111122222 33344321111 112346777788876
Q ss_pred CCcCCCcceEEEEE
Q 044265 489 GAVAPPGYYMAFVV 502 (517)
Q Consensus 489 ~~~~ppG~ymlf~~ 502 (517)
+- -|.|.|-|-
T Consensus 105 A~---VG~y~l~v~ 115 (118)
T PF00868_consen 105 AP---VGRYKLSVE 115 (118)
T ss_dssp S-----EEEEEEEE
T ss_pred Cc---eEEEEEEEE
Confidence 54 499999863
No 151
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=58.20 E-value=2e+02 Score=29.05 Aligned_cols=135 Identities=13% Similarity=0.160 Sum_probs=70.4
Q ss_pred eEEEEECCCCCeEEccccCCCcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccCcCc-cceeE
Q 044265 70 HSAILDLQTNQIRPLMILTDTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVNGRW-YGTDQ 148 (517)
Q Consensus 70 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~-~~s~~ 148 (517)
.+.+||.+|+........++.--.....-++.+++++...+ ...+.||-.. .-..+ +-.+-.-- --+++
T Consensus 295 TAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrD---tTFRLWDFRe-----aI~sV--~VFQGHtdtVTS~v 364 (481)
T KOG0300|consen 295 TANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRD---TTFRLWDFRE-----AIQSV--AVFQGHTDTVTSVV 364 (481)
T ss_pred cceeeeeccCceeccccCcchhccccccCCcceEEEEeccC---ceeEeccchh-----hccee--eeecccccceeEEE
Confidence 46789999998877666666432222334788999987654 4556666431 01111 00110001 11222
Q ss_pred EcCCCcEEEEcCCCCCceEEeCCCCCceeccchhhccccccCCCCceEEEccCCcEEEEE--CCceEEEeCCCCeE
Q 044265 149 ILPDGSVIILGGKGANTVEYYPPRNGAVSFPFLADVEDKQMDNLYPYVHLLPNGHLFIFA--NDKAVMYDYETNKI 222 (517)
Q Consensus 149 ~L~dG~v~vvGG~~~~~~E~yP~~~~w~~~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~G--g~~~~~ydp~t~~w 222 (517)
.--|.+ |+.|++..++.+|...|--..+.-+ +.| .+.| ...+...++|.++- ++.+.+||...++-
T Consensus 365 F~~dd~--vVSgSDDrTvKvWdLrNMRsplATI--Rtd-S~~N---Rvavs~g~~iIAiPhDNRqvRlfDlnG~Rl 432 (481)
T KOG0300|consen 365 FNTDDR--VVSGSDDRTVKVWDLRNMRSPLATI--RTD-SPAN---RVAVSKGHPIIAIPHDNRQVRLFDLNGNRL 432 (481)
T ss_pred EecCCc--eeecCCCceEEEeeeccccCcceee--ecC-Cccc---eeEeecCCceEEeccCCceEEEEecCCCcc
Confidence 222444 4577888888887222111111111 011 1112 35566667777764 57899999988854
No 152
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=58.02 E-value=1.2e+02 Score=36.31 Aligned_cols=65 Identities=15% Similarity=0.218 Sum_probs=39.1
Q ss_pred ceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccC-------------ccccCcCccceeEEcCCCcEEEEcC
Q 044265 94 SGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDD-------------VELVNGRWYGTDQILPDGSVIILGG 160 (517)
Q Consensus 94 ~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~-------------~~m~~~R~~~s~~~L~dG~v~vvGG 160 (517)
+.++..+|+|||+-..+ ..|++||+. +........ +.+.. -.++++-+||++||.-.
T Consensus 808 Gvavd~dG~LYVADs~N---~rIrviD~~----tg~v~tiaG~G~~G~~dG~~~~a~l~~---P~GIavd~dG~lyVaDt 877 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYN---HKIKKLDPA----TKRVTTLAGTGKAGFKDGKALKAQLSE---PAGLALGENGRLFVADT 877 (1057)
T ss_pred eeeEeCCCcEEEEECCC---CEEEEEECC----CCeEEEEeccCCcCCCCCcccccccCC---ceEEEEeCCCCEEEEEC
Confidence 34456789999986543 689999997 444433200 11211 23456667899998865
Q ss_pred CCCCceEEe
Q 044265 161 KGANTVEYY 169 (517)
Q Consensus 161 ~~~~~~E~y 169 (517)
.+ ..+.++
T Consensus 878 ~N-n~Irvi 885 (1057)
T PLN02919 878 NN-SLIRYL 885 (1057)
T ss_pred CC-CEEEEE
Confidence 43 345555
No 153
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=57.42 E-value=3.3e+02 Score=30.84 Aligned_cols=137 Identities=15% Similarity=0.110 Sum_probs=73.4
Q ss_pred eEEEEECCCCCeEEccccCCCcccceeecCCCcEEEecCCCCCCCeEEEecCCCC----CCCCceEecc-CccccCcCcc
Q 044265 70 HSAILDLQTNQIRPLMILTDTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEA----NGLCDWVELD-DVELVNGRWY 144 (517)
Q Consensus 70 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~----~~t~~W~~~~-~~~m~~~R~~ 144 (517)
...+||..+..-......|+.---..+..+|++=+++||.+ ++|..||-.-- +.+.+...+. ...|...---
T Consensus 435 el~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saD---ktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddv 511 (888)
T KOG0306|consen 435 ELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSAD---KTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDV 511 (888)
T ss_pred ceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCC---cEEEEEeEEEEeccCcccceeeeeccceEEeccccE
Confidence 35678877655544434455433345678899999999875 56666653310 0011111110 0112223334
Q ss_pred ceeEEcCCCcEEEEcCCCCCceEEe-CCCCCce-e--ccchhhccccccCCCCceEEEccCCcEEEEEC--CceEEEeCC
Q 044265 145 GTDQILPDGSVIILGGKGANTVEYY-PPRNGAV-S--FPFLADVEDKQMDNLYPYVHLLPNGHLFIFAN--DKAVMYDYE 218 (517)
Q Consensus 145 ~s~~~L~dG~v~vvGG~~~~~~E~y-P~~~~w~-~--~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~Gg--~~~~~ydp~ 218 (517)
.++.+-|||+.+++|=.+ .++.+| -.+-+.. . ..-|+-. .+-..+|+++.+.|+ +++-+|-..
T Consensus 512 L~v~~Spdgk~LaVsLLd-nTVkVyflDtlKFflsLYGHkLPV~----------smDIS~DSklivTgSADKnVKiWGLd 580 (888)
T KOG0306|consen 512 LCVSVSPDGKLLAVSLLD-NTVKVYFLDTLKFFLSLYGHKLPVL----------SMDISPDSKLIVTGSADKNVKIWGLD 580 (888)
T ss_pred EEEEEcCCCcEEEEEecc-CeEEEEEecceeeeeeeccccccee----------EEeccCCcCeEEeccCCCceEEeccc
Confidence 566778899999988665 456666 3222221 0 0001100 134567999999887 456666554
Q ss_pred CC
Q 044265 219 TN 220 (517)
Q Consensus 219 t~ 220 (517)
-+
T Consensus 581 FG 582 (888)
T KOG0306|consen 581 FG 582 (888)
T ss_pred cc
Confidence 43
No 154
>PRK02889 tolB translocation protein TolB; Provisional
Probab=57.36 E-value=2.6e+02 Score=29.51 Aligned_cols=87 Identities=14% Similarity=0.150 Sum_probs=48.2
Q ss_pred CcceEEEEECCCCCeEEccccCCCcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccCcCccce
Q 044265 67 CYAHSAILDLQTNQIRPLMILTDTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVNGRWYGT 146 (517)
Q Consensus 67 ~~~~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~~s 146 (517)
.......+|..+++.+.+... ..........+||+.+++.....+...++.+|.. +.+...+ . ....+...
T Consensus 262 g~~~Iy~~d~~~~~~~~lt~~-~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~----~g~~~~l--t--~~g~~~~~ 332 (427)
T PRK02889 262 GNSQIYTVNADGSGLRRLTQS-SGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPAS----GGAAQRV--T--FTGSYNTS 332 (427)
T ss_pred CCceEEEEECCCCCcEECCCC-CCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECC----CCceEEE--e--cCCCCcCc
Confidence 334566677877777766432 1223334578899876665433344566666655 4444443 1 11233334
Q ss_pred eEEcCCCcEEEEcCCC
Q 044265 147 DQILPDGSVIILGGKG 162 (517)
Q Consensus 147 ~~~L~dG~v~vvGG~~ 162 (517)
...-+||+.++.....
T Consensus 333 ~~~SpDG~~Ia~~s~~ 348 (427)
T PRK02889 333 PRISPDGKLLAYISRV 348 (427)
T ss_pred eEECCCCCEEEEEEcc
Confidence 5566789876655433
No 155
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=56.71 E-value=50 Score=34.94 Aligned_cols=134 Identities=12% Similarity=0.109 Sum_probs=65.6
Q ss_pred EEEEECCCCCeEEccccCCCcc-cceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccCcCccceeEE
Q 044265 71 SAILDLQTNQIRPLMILTDTWC-SSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVNGRWYGTDQI 149 (517)
Q Consensus 71 ~~~yDp~t~~w~~l~~~~~~~c-~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~~s~~~ 149 (517)
+..||..+++..+-- .++..| ....++.+|+-+|.--.+ +++++|+-. ...=... ..-+.....++++.
T Consensus 324 i~~wDiRs~kvvqeY-d~hLg~i~~i~F~~~g~rFissSDd---ks~riWe~~----~~v~ik~--i~~~~~hsmP~~~~ 393 (503)
T KOG0282|consen 324 IRQWDIRSGKVVQEY-DRHLGAILDITFVDEGRRFISSSDD---KSVRIWENR----IPVPIKN--IADPEMHTMPCLTL 393 (503)
T ss_pred EEEEeccchHHHHHH-HhhhhheeeeEEccCCceEeeeccC---ccEEEEEcC----CCccchh--hcchhhccCcceec
Confidence 567887777643211 112222 234567777777775432 588888754 2221111 00011123455666
Q ss_pred cCCCcEEEEcCCCCCc-----eEEeCCCCCceeccchhhccccccCCCCc-eEEEccCCcEEEEECC--ceEEEeCCCCe
Q 044265 150 LPDGSVIILGGKGANT-----VEYYPPRNGAVSFPFLADVEDKQMDNLYP-YVHLLPNGHLFIFAND--KAVMYDYETNK 221 (517)
Q Consensus 150 L~dG~v~vvGG~~~~~-----~E~yP~~~~w~~~~~l~~t~~~~~~~~yp-~~~~~~~G~iyv~Gg~--~~~~ydp~t~~ 221 (517)
-|++++++.--.++.. .+.|+.+..-.. .. +...-|+ .+-..|||+..+.|.. .+..||+++-+
T Consensus 394 ~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~f----eG----h~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~k 465 (503)
T KOG0282|consen 394 HPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRF----EG----HSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTK 465 (503)
T ss_pred CCCCCeehhhccCceEEEEecccccccCHhhhh----cc----eeccCceeeEEEcCCCCeEEeecCCccEEEeechhhh
Confidence 6677776654443321 122211110000 00 0011132 3456789999999874 57889998754
Q ss_pred E
Q 044265 222 I 222 (517)
Q Consensus 222 w 222 (517)
-
T Consensus 466 l 466 (503)
T KOG0282|consen 466 L 466 (503)
T ss_pred h
Confidence 3
No 156
>PF15418 DUF4625: Domain of unknown function (DUF4625)
Probab=55.83 E-value=1.4e+02 Score=26.12 Aligned_cols=86 Identities=17% Similarity=0.297 Sum_probs=43.8
Q ss_pred CCCceecC-----C---ceeecCCeEEEEEEecCCceee--EEEEEecCCcccccCcCC----cc--eEEeeecccccCC
Q 044265 412 LRPVIEEI-----P---ETVRYGEAFDVFVTVPLPVVGI--LEVNLGNAPFATHSFQQG----QR--LVKITVTPSVPDA 475 (517)
Q Consensus 412 ~RP~i~~~-----p---~~~~~g~~~~v~~~~~~~~~~~--~~v~l~~~~~~TH~~~~~----qR--~~~l~~~~~~~~~ 475 (517)
..|+|+.. | ..+..|+.|.+.+...+ +..+ ++|.+ -.-|-.|+-... .. .+...|.......
T Consensus 13 ~~P~I~~~~~~~~p~~~~~~~~G~~ihfe~~i~d-~~~i~si~VeI-H~nfd~H~h~~~~~~~~~~~~~~~~~~~~~g~~ 90 (132)
T PF15418_consen 13 EKPVITLNEIGAFPENCKVATRGDDIHFEADISD-NSAIKSIKVEI-HNNFDHHTHSTEAGECEKPWVFEQDYDIYGGKK 90 (132)
T ss_pred CCCEEEeeecccCCCCCeEEecCCcEEEEEEEEc-ccceeEEEEEE-ecCcCcccccccccccccCcEEEEEEcccCCcc
Confidence 58888875 3 35788999888876544 2333 34444 122333333221 11 1111221110001
Q ss_pred CCcEEEEEeCCCCCCcCCCcceEEEEE
Q 044265 476 NGRYRVGCTAPPNGAVAPPGYYMAFVV 502 (517)
Q Consensus 476 ~~~~~~~v~~P~~~~~~ppG~ymlf~~ 502 (517)
.-.....+.+|.+ |+||-|-+++.
T Consensus 91 ~~~~h~~i~IPa~---a~~G~YH~~i~ 114 (132)
T PF15418_consen 91 NYDFHEHIDIPAD---APAGDYHFMIT 114 (132)
T ss_pred cEeEEEeeeCCCC---CCCcceEEEEE
Confidence 1123445678877 89999977765
No 157
>PRK01742 tolB translocation protein TolB; Provisional
Probab=55.33 E-value=2.7e+02 Score=29.26 Aligned_cols=54 Identities=19% Similarity=0.207 Sum_probs=33.1
Q ss_pred EEecCCcEEEEcCccCCCCCcccCCCCccccEEEeCCCCCCceeccCCCCCccccccceeeecCCCcEEEecCCC
Q 044265 307 VMLPTGDVLIINGAQAGTQGFEMASNPCLFPVLYRPTQPAGLRFMTLNPGTIPRMYHSTANLLPDGRVLIAGSNP 381 (517)
Q Consensus 307 v~lpdG~v~v~GG~~~g~~g~~~~~~~~~~~e~YdP~t~~g~~W~~~~~~~~~R~yhs~a~ll~dG~V~v~GG~~ 381 (517)
...|||+.+++.+.+ .+.++|..+. +++.+.... ..++ ....|||+.++.++..
T Consensus 339 ~~SpDG~~ia~~~~~--------------~i~~~Dl~~g---~~~~lt~~~---~~~~-~~~sPdG~~i~~~s~~ 392 (429)
T PRK01742 339 QISADGKTLVMINGD--------------NVVKQDLTSG---STEVLSSTF---LDES-PSISPNGIMIIYSSTQ 392 (429)
T ss_pred cCCCCCCEEEEEcCC--------------CEEEEECCCC---CeEEecCCC---CCCC-ceECCCCCEEEEEEcC
Confidence 456899877665432 1356888887 665443211 1233 3457999999988754
No 158
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=52.90 E-value=1.9e+02 Score=32.11 Aligned_cols=213 Identities=11% Similarity=0.142 Sum_probs=0.0
Q ss_pred eCCEEEEEeccCCCCCCcccCCCcccccccccccccCCcceEEEEECCCCCeEEccccCCCcccceeecCCCcEEEecCC
Q 044265 30 RFNTVVLLDRTNIGPSRKMLGRGRCRLDRNDRALKRDCYAHSAILDLQTNQIRPLMILTDTWCSSGQILADGTVLQTGGD 109 (517)
Q Consensus 30 ~~gkv~~~gg~~~g~~~~~~~~G~~~~~~~~~~~~~d~~~~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~v~GG~ 109 (517)
++++.++-||.+ |..+. ++..+.++-.+.....-...|..|..-.+...+|+.+|.--.
T Consensus 35 ~~~ryLfTgGRD----------g~i~~-----------W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~Ss 93 (735)
T KOG0308|consen 35 PNGRYLFTGGRD----------GIIRL-----------WSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASS 93 (735)
T ss_pred CCCceEEecCCC----------ceEEE-----------eccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecC
Q ss_pred CCCCCeEEEecCCCCCCCCceEeccCccccCcCccceeEEc--CCCcEEEEcCCCCC-ceEEe---CC-----CCCceec
Q 044265 110 LDGYKKIRKFSPCEANGLCDWVELDDVELVNGRWYGTDQIL--PDGSVIILGGKGAN-TVEYY---PP-----RNGAVSF 178 (517)
Q Consensus 110 ~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~~s~~~L--~dG~v~vvGG~~~~-~~E~y---P~-----~~~w~~~ 178 (517)
+ .+|.+|++.. .++|.. .-+...+-|-.+.+. ++..+++.||.+.. -+..+ ++ .+.-...
T Consensus 94 D---tTVK~W~~~~---~~~~c~---stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~ 164 (735)
T KOG0308|consen 94 D---TTVKVWNAHK---DNTFCM---STIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVN 164 (735)
T ss_pred C---ceEEEeeccc---CcchhH---hhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccc
Q ss_pred cchhhccccccCCCCceEEEccCCcEEEEEC--CceEEEeCCCCeEEEecCCCCCCCCCCCCCCceeeeecccCccccEE
Q 044265 179 PFLADVEDKQMDNLYPYVHLLPNGHLFIFAN--DKAVMYDYETNKIAREYPPLDGGPRNYPSAGSSAMLALEGDFATAVI 256 (517)
Q Consensus 179 ~~l~~t~~~~~~~~yp~~~~~~~G~iyv~Gg--~~~~~ydp~t~~w~~~~p~~p~~~r~~~~~g~~v~l~~~~~~~~gkI 256 (517)
......++ .-|. .+.-..|.|++.|| +...+|||++.+-...+ .+...+-. ..++.+ +|.=
T Consensus 165 sl~sG~k~----siYS-LA~N~t~t~ivsGgtek~lr~wDprt~~kimkL---rGHTdNVr---~ll~~d------DGt~ 227 (735)
T KOG0308|consen 165 SLGSGPKD----SIYS-LAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKL---RGHTDNVR---VLLVND------DGTR 227 (735)
T ss_pred cCCCCCcc----ceee-eecCCcceEEEecCcccceEEeccccccceeee---eccccceE---EEEEcC------CCCe
Q ss_pred EEEcCCcCCcccccCCCCCCCCceeEEEecCCCCCceec-CCCcceeeeeeEEecCCcEEEE
Q 044265 257 VVCGGAQFGAFIQRSTDTPAHGSCGRIIATSADPTWEME-DMPFGRIMGDMVMLPTGDVLII 317 (517)
Q Consensus 257 ~v~GG~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W~~~-~m~~~R~~~~~v~lpdG~v~v~ 317 (517)
++.++.+ +... . ++...|+.++ ..++..-|+..
T Consensus 228 ~ls~sSD-gtIr--------------------------lWdLgqQrCl~T-~~vH~e~VWaL 261 (735)
T KOG0308|consen 228 LLSASSD-GTIR--------------------------LWDLGQQRCLAT-YIVHKEGVWAL 261 (735)
T ss_pred EeecCCC-ceEE--------------------------eeeccccceeee-EEeccCceEEE
No 159
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=51.72 E-value=2.9e+02 Score=28.51 Aligned_cols=119 Identities=13% Similarity=0.110 Sum_probs=62.3
Q ss_pred CcEEEecCCC-CCCCeEEEecCCCCCCCCceEeccCccccCcCccceeEEcCCCcE-EEEcCC--------CCCceEEe-
Q 044265 101 GTVLQTGGDL-DGYKKIRKFSPCEANGLCDWVELDDVELVNGRWYGTDQILPDGSV-IILGGK--------GANTVEYY- 169 (517)
Q Consensus 101 G~l~v~GG~~-~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~~s~~~L~dG~v-~vvGG~--------~~~~~E~y- 169 (517)
.++||.-... ....++.++|.. +.+-. ...+..+.-+.. .-+||+. |+.-.. +...+++|
T Consensus 13 ~~v~V~d~~~~~~~~~v~ViD~~----~~~v~----g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D 83 (352)
T TIGR02658 13 RRVYVLDPGHFAATTQVYTIDGE----AGRVL----GMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVID 83 (352)
T ss_pred CEEEEECCcccccCceEEEEECC----CCEEE----EEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEE
Confidence 3456654421 123678888877 43322 223344333333 5567654 555441 34568888
Q ss_pred CCCCCce-eccchhhccccccCCCCce-EEEccCCcEEEEEC----CceEEEeCCCCeEEEecCCCCC
Q 044265 170 PPRNGAV-SFPFLADVEDKQMDNLYPY-VHLLPNGHLFIFAN----DKAVMYDYETNKIAREYPPLDG 231 (517)
Q Consensus 170 P~~~~w~-~~~~l~~t~~~~~~~~yp~-~~~~~~G~iyv~Gg----~~~~~ydp~t~~w~~~~p~~p~ 231 (517)
+++.+-. ..+.-...+.. ...++. ..+.+|||...+.+ ..+.+.|..+++....++ .|+
T Consensus 84 ~~t~~~~~~i~~p~~p~~~--~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~-vp~ 148 (352)
T TIGR02658 84 PQTHLPIADIELPEGPRFL--VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMD-VPD 148 (352)
T ss_pred CccCcEEeEEccCCCchhh--ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEe-CCC
Confidence 7665443 22211111100 012332 45568998555444 468899999998886664 354
No 160
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=51.39 E-value=2.9e+02 Score=28.44 Aligned_cols=136 Identities=12% Similarity=0.114 Sum_probs=70.7
Q ss_pred eEEEEECCCCCeEEccccCCCcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccCcCccceeEE
Q 044265 70 HSAILDLQTNQIRPLMILTDTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVNGRWYGTDQI 149 (517)
Q Consensus 70 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~~s~~~ 149 (517)
..-+||.+|++.......+-.-|.+.++..-.-.+...|.+ +.|.+||.. .++.+..=-..|.. -.+..+
T Consensus 174 tikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~ged---k~VKCwDLe----~nkvIR~YhGHlS~---V~~L~l 243 (460)
T KOG0285|consen 174 TIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGED---KQVKCWDLE----YNKVIRHYHGHLSG---VYCLDL 243 (460)
T ss_pred eeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCC---CeeEEEech----hhhhHHHhccccce---eEEEec
Confidence 47799999998875555555666665544333334444442 789999998 55544320011221 112333
Q ss_pred cCCCcEEEEcCCCCCceEEe-CCCC-CceeccchhhccccccCCCCceEEEccCCcEEEEEC-CceEEEeCCCCeEE
Q 044265 150 LPDGSVIILGGKGANTVEYY-PPRN-GAVSFPFLADVEDKQMDNLYPYVHLLPNGHLFIFAN-DKAVMYDYETNKIA 223 (517)
Q Consensus 150 L~dG~v~vvGG~~~~~~E~y-P~~~-~w~~~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~Gg-~~~~~ydp~t~~w~ 223 (517)
-|--++++.||++. +..+| -.+. +-..+.- .+ .....-++-..|++|+-..- .++.+||...++-.
T Consensus 244 hPTldvl~t~grDs-t~RvWDiRtr~~V~~l~G--H~-----~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~ 312 (460)
T KOG0285|consen 244 HPTLDVLVTGGRDS-TIRVWDIRTRASVHVLSG--HT-----NPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTM 312 (460)
T ss_pred cccceeEEecCCcc-eEEEeeecccceEEEecC--CC-----CcceeEEeecCCCceEEecCCceEEEeeeccCcee
Confidence 34456888899874 45555 2221 1111110 00 00000011112777775443 46788999888754
No 161
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=50.95 E-value=2.9e+02 Score=28.26 Aligned_cols=93 Identities=19% Similarity=0.271 Sum_probs=58.9
Q ss_pred eEEEEECCCCCeEEccc---cC-----CCcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCc--eEeccCcccc
Q 044265 70 HSAILDLQTNQIRPLMI---LT-----DTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCD--WVELDDVELV 139 (517)
Q Consensus 70 ~~~~yDp~t~~w~~l~~---~~-----~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~--W~~~~~~~m~ 139 (517)
.+..||+..++++.+.. ++ +.+|+..-+.+||+.+-+-= .+.+++.+|-.... +.+ ..+..+..-.
T Consensus 216 ~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasN--Rg~dsI~~f~V~~~--~g~L~~~~~~~teg~ 291 (346)
T COG2706 216 DVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASN--RGHDSIAVFSVDPD--GGKLELVGITPTEGQ 291 (346)
T ss_pred EEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEec--CCCCeEEEEEEcCC--CCEEEEEEEeccCCc
Confidence 46678888888887653 33 34677777788999776642 24567777754422 232 1111012344
Q ss_pred CcCccceeEEcCCCcEEEEcCCCCCceEEe
Q 044265 140 NGRWYGTDQILPDGSVIILGGKGANTVEYY 169 (517)
Q Consensus 140 ~~R~~~s~~~L~dG~v~vvGG~~~~~~E~y 169 (517)
.||.. ..-++|+.+|+-+.+..++.+|
T Consensus 292 ~PR~F---~i~~~g~~Liaa~q~sd~i~vf 318 (346)
T COG2706 292 FPRDF---NINPSGRFLIAANQKSDNITVF 318 (346)
T ss_pred CCccc---eeCCCCCEEEEEccCCCcEEEE
Confidence 57753 3446899999999888888888
No 162
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=50.21 E-value=3.1e+02 Score=28.34 Aligned_cols=53 Identities=9% Similarity=-0.095 Sum_probs=34.5
Q ss_pred ceEEEEECCCCCeE-EccccCCCc------ccceeecCCCcEEEecCCCCCCCeEEEecCC
Q 044265 69 AHSAILDLQTNQIR-PLMILTDTW------CSSGQILADGTVLQTGGDLDGYKKIRKFSPC 122 (517)
Q Consensus 69 ~~~~~yDp~t~~w~-~l~~~~~~~------c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~ 122 (517)
..+.+||++|.+-. .++...+++ -...++.+||+.+.+--. +...++.+.|..
T Consensus 77 d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~-~p~~~V~VvD~~ 136 (352)
T TIGR02658 77 DYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQF-SPSPAVGVVDLE 136 (352)
T ss_pred CEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecC-CCCCEEEEEECC
Confidence 46899999998876 344433322 123456789986655433 235788999987
No 163
>PRK02888 nitrous-oxide reductase; Validated
Probab=48.70 E-value=4.3e+02 Score=29.55 Aligned_cols=53 Identities=19% Similarity=0.040 Sum_probs=37.5
Q ss_pred CeEEEecCCCCCCCCceEeccCccccCcCccceeEEcCCCcEEEEcCCCCCceEEe
Q 044265 114 KKIRKFSPCEANGLCDWVELDDVELVNGRWYGTDQILPDGSVIILGGKGANTVEYY 169 (517)
Q Consensus 114 ~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~~s~~~L~dG~v~vvGG~~~~~~E~y 169 (517)
+.|-+.|..+.+ ...+.-. ..++.++.-|++.+-|||+-+++.|...+++.++
T Consensus 296 n~V~VID~~t~~-~~~~~v~--~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVI 348 (635)
T PRK02888 296 SKVPVVDGRKAA-NAGSALT--RYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVI 348 (635)
T ss_pred CEEEEEECCccc-cCCcceE--EEEECCCCccceEECCCCCEEEEeCCCCCcEEEE
Confidence 568888887200 0123333 4578888889999999999888887767777777
No 164
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=47.61 E-value=1.1e+02 Score=33.51 Aligned_cols=81 Identities=21% Similarity=0.245 Sum_probs=41.2
Q ss_pred EEEEECCCCC--eEEcccc-CCC----cc---cceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccC
Q 044265 71 SAILDLQTNQ--IRPLMIL-TDT----WC---SSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVN 140 (517)
Q Consensus 71 ~~~yDp~t~~--w~~l~~~-~~~----~c---~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~ 140 (517)
+..+|.+|++ |+.-... ... .| ..+..+.+++||+.... ..+..+|..++ ...|... ..++..
T Consensus 81 v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~d----g~l~ALDa~TG--k~~W~~~-~~~~~~ 153 (527)
T TIGR03075 81 VYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLD----ARLVALDAKTG--KVVWSKK-NGDYKA 153 (527)
T ss_pred EEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCC----CEEEEEECCCC--CEEeecc-cccccc
Confidence 5667777765 6542211 111 12 23345667888774332 46888998854 5678754 112221
Q ss_pred cCccceeEEcCCCcEEEE
Q 044265 141 GRWYGTDQILPDGSVIIL 158 (517)
Q Consensus 141 ~R~~~s~~~L~dG~v~vv 158 (517)
.....++-++.+|+||+-
T Consensus 154 ~~~~tssP~v~~g~Vivg 171 (527)
T TIGR03075 154 GYTITAAPLVVKGKVITG 171 (527)
T ss_pred cccccCCcEEECCEEEEe
Confidence 111122233448888764
No 165
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=47.43 E-value=3e+02 Score=27.32 Aligned_cols=166 Identities=15% Similarity=0.227 Sum_probs=80.7
Q ss_pred eEEEEECCCCCeEEccccC--CCcccceeecCCCcEEEecCCCC-C-CCeEEEecCCCCCC---CCc-eEeccCccccCc
Q 044265 70 HSAILDLQTNQIRPLMILT--DTWCSSGQILADGTVLQTGGDLD-G-YKKIRKFSPCEANG---LCD-WVELDDVELVNG 141 (517)
Q Consensus 70 ~~~~yDp~t~~w~~l~~~~--~~~c~~~~~l~dG~l~v~GG~~~-g-~~~v~~ydp~~~~~---t~~-W~~~~~~~m~~~ 141 (517)
.+.+||.++++-...-... -..| -+..+|.+.++-=... | ...+.+||...... .++ ...+ +.+
T Consensus 75 t~kLWDv~tGk~la~~k~~~~Vk~~---~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI-----~t~ 146 (327)
T KOG0643|consen 75 TAKLWDVETGKQLATWKTNSPVKRV---DFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKI-----PTP 146 (327)
T ss_pred eeEEEEcCCCcEEEEeecCCeeEEE---eeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEe-----cCC
Confidence 4789999998866543221 2222 2345566555432211 1 35677888763210 111 2222 222
Q ss_pred CccceeEEc-CCCcEEEEcCCCCCceEEe-CCCCCceecc-chhhccccccCCCCceEEEccCCcEEEEECC--ceEEEe
Q 044265 142 RWYGTDQIL-PDGSVIILGGKGANTVEYY-PPRNGAVSFP-FLADVEDKQMDNLYPYVHLLPNGHLFIFAND--KAVMYD 216 (517)
Q Consensus 142 R~~~s~~~L-~dG~v~vvGG~~~~~~E~y-P~~~~w~~~~-~l~~t~~~~~~~~yp~~~~~~~G~iyv~Gg~--~~~~yd 216 (517)
-...+.+.+ +-|+-+|.|+.+ .++..| -.++.-.... -.. .+ .-. -+-..+|...|+.|.. .+.++|
T Consensus 147 ~skit~a~Wg~l~~~ii~Ghe~-G~is~~da~~g~~~v~s~~~h-~~--~In----d~q~s~d~T~FiT~s~Dttakl~D 218 (327)
T KOG0643|consen 147 DSKITSALWGPLGETIIAGHED-GSISIYDARTGKELVDSDEEH-SS--KIN----DLQFSRDRTYFITGSKDTTAKLVD 218 (327)
T ss_pred ccceeeeeecccCCEEEEecCC-CcEEEEEcccCceeeechhhh-cc--ccc----cccccCCcceEEecccCccceeee
Confidence 233444443 235666666654 456777 3332221110 000 00 000 1223468889998874 577888
Q ss_pred CCCCeEEEecCCCCCCCCCCCCCCceeeeecccCccccEEEEEcCCc
Q 044265 217 YETNKIAREYPPLDGGPRNYPSAGSSAMLALEGDFATAVIVVCGGAQ 263 (517)
Q Consensus 217 p~t~~w~~~~p~~p~~~r~~~~~g~~v~l~~~~~~~~gkI~v~GG~~ 263 (517)
..+-+..+..-. ..+.+ ++++.|+ ..+|..-||.+
T Consensus 219 ~~tl~v~Kty~t--e~PvN-----~aaisP~-----~d~VilgGGqe 253 (327)
T KOG0643|consen 219 VRTLEVLKTYTT--ERPVN-----TAAISPL-----LDHVILGGGQE 253 (327)
T ss_pred ccceeeEEEeee--ccccc-----ceecccc-----cceEEecCCce
Confidence 887665543310 00122 4567775 67776666665
No 166
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=46.53 E-value=3.5e+02 Score=27.98 Aligned_cols=278 Identities=14% Similarity=0.147 Sum_probs=122.2
Q ss_pred eEEEEECCCCCeE-EccccCCCcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceE-eccCcccc----CcCc
Q 044265 70 HSAILDLQTNQIR-PLMILTDTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWV-ELDDVELV----NGRW 143 (517)
Q Consensus 70 ~~~~yDp~t~~w~-~l~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~-~~~~~~m~----~~R~ 143 (517)
.+.++|+.+++-. .+..... +.+.++..||+.++++-+.. ..+.++|.. +.+=. .++...+. ..|-
T Consensus 59 ~vsviD~~~~~~v~~i~~G~~--~~~i~~s~DG~~~~v~n~~~--~~v~v~D~~----tle~v~~I~~~~~~~~~~~~Rv 130 (369)
T PF02239_consen 59 TVSVIDLATGKVVATIKVGGN--PRGIAVSPDGKYVYVANYEP--GTVSVIDAE----TLEPVKTIPTGGMPVDGPESRV 130 (369)
T ss_dssp EEEEEETTSSSEEEEEE-SSE--EEEEEE--TTTEEEEEEEET--TEEEEEETT----T--EEEEEE--EE-TTTS---E
T ss_pred eEEEEECCcccEEEEEecCCC--cceEEEcCCCCEEEEEecCC--CceeEeccc----cccceeecccccccccccCCCc
Confidence 5789999998854 3333333 34566778999988886643 688899977 43322 11112222 2342
Q ss_pred cceeEEcCCCcEEEEcCCCCCceEEe-CCCCCceeccchhhccccccCCCCc-eEEEccCCcEEEEEC---CceEEEeCC
Q 044265 144 YGTDQILPDGSVIILGGKGANTVEYY-PPRNGAVSFPFLADVEDKQMDNLYP-YVHLLPNGHLFIFAN---DKAVMYDYE 218 (517)
Q Consensus 144 ~~s~~~L~dG~v~vvGG~~~~~~E~y-P~~~~w~~~~~l~~t~~~~~~~~yp-~~~~~~~G~iyv~Gg---~~~~~ydp~ 218 (517)
.+....++..-||+-=.+...+.+. ....+-.....+. ...++ -...-++|+.|+.+. +.+.+.|.+
T Consensus 131 -~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~-------~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~ 202 (369)
T PF02239_consen 131 -AAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIK-------VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTK 202 (369)
T ss_dssp -EEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE---------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETT
T ss_pred -eeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeec-------ccccccccccCcccceeeecccccceeEEEeec
Confidence 2344455667677654443333222 1111111111110 11223 245567898887753 567889999
Q ss_pred CCeEEEecCCCCCCCCCCCCCCceeeeecccCccccEEEEEcCCcCCcccccCCCCCCCCceeEEEecCCCCCceec-CC
Q 044265 219 TNKIAREYPPLDGGPRNYPSAGSSAMLALEGDFATAVIVVCGGAQFGAFIQRSTDTPAHGSCGRIIATSADPTWEME-DM 297 (517)
Q Consensus 219 t~~w~~~~p~~p~~~r~~~~~g~~v~l~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W~~~-~m 297 (517)
+++-...++ .+....+..++....| .-|.++..+|........ .. ......+| ...|+.. .+
T Consensus 203 ~~k~v~~i~---~g~~p~~~~~~~~php-----~~g~vw~~~~~~~~~~~~-ig----~~~v~v~d----~~~wkvv~~I 265 (369)
T PF02239_consen 203 TGKLVALID---TGKKPHPGPGANFPHP-----GFGPVWATSGLGYFAIPL-IG----TDPVSVHD----DYAWKVVKTI 265 (369)
T ss_dssp TTEEEEEEE----SSSBEETTEEEEEET-----TTEEEEEEEBSSSSEEEE-EE------TTT-ST----TTBTSEEEEE
T ss_pred cceEEEEee---ccccccccccccccCC-----CcceEEeeccccceeccc-cc----CCccccch----hhcCeEEEEE
Confidence 987653221 1111111112221111 135566666653211000 00 00000111 3568765 44
Q ss_pred CcceeeeeeEEecCCcEEEEcCccCCCCCcccCCCCccccEEEeCCCCCCcee-ccCCCCCccccccceeeecCCCc-EE
Q 044265 298 PFGRIMGDMVMLPTGDVLIINGAQAGTQGFEMASNPCLFPVLYRPTQPAGLRF-MTLNPGTIPRMYHSTANLLPDGR-VL 375 (517)
Q Consensus 298 ~~~R~~~~~v~lpdG~v~v~GG~~~g~~g~~~~~~~~~~~e~YdP~t~~g~~W-~~~~~~~~~R~yhs~a~ll~dG~-V~ 375 (517)
+..-........||++-+.+.=.. +. ...++.++|.++- += ..+...+-.|..|- -.-+||+ ||
T Consensus 266 ~~~G~glFi~thP~s~~vwvd~~~-~~--------~~~~v~viD~~tl---~~~~~i~~~~~~~~~h~--ef~~dG~~v~ 331 (369)
T PF02239_consen 266 PTQGGGLFIKTHPDSRYVWVDTFL-NP--------DADTVQVIDKKTL---KVVKTITPGPGKRVVHM--EFNPDGKEVW 331 (369)
T ss_dssp E-SSSS--EE--TT-SEEEEE-TT--S--------SHT-EEEEECCGT---EEEE-HHHHHT--EEEE--EE-TTSSEEE
T ss_pred ECCCCcceeecCCCCccEEeeccC-CC--------CCceEEEEECcCc---ceeEEEeccCCCcEecc--EECCCCCEEE
Confidence 433222333456888866554110 00 0235789998876 21 12222222335552 2347876 56
Q ss_pred EecCCCccccccCCCCCCceeeEEEeCCccC
Q 044265 376 IAGSNPHYFYKFNAEFPTELRIEAFSPEYLS 406 (517)
Q Consensus 376 v~GG~~~~~~~~~~~~~~~~~vE~y~P~yl~ 406 (517)
|+--+.+ .++.+|+...|.
T Consensus 332 vS~~~~~------------~~i~v~D~~Tl~ 350 (369)
T PF02239_consen 332 VSVWDGN------------GAIVVYDAKTLK 350 (369)
T ss_dssp EEEE--T------------TEEEEEETTTTE
T ss_pred EEEecCC------------CEEEEEECCCcE
Confidence 6543321 167888888763
No 167
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=45.74 E-value=1.4e+02 Score=31.96 Aligned_cols=139 Identities=14% Similarity=0.126 Sum_probs=70.8
Q ss_pred cEEEEECCceEEEeCCCCeEEEecCCCCCC-CCCCCCCCceeeeecccCccccEEEEEcCCcCCcccccCCCCCCCCcee
Q 044265 203 HLFIFANDKAVMYDYETNKIAREYPPLDGG-PRNYPSAGSSAMLALEGDFATAVIVVCGGAQFGAFIQRSTDTPAHGSCG 281 (517)
Q Consensus 203 ~iyv~Gg~~~~~ydp~t~~w~~~~p~~p~~-~r~~~~~g~~v~l~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~a~~s~~ 281 (517)
++|.-|-.-+.+||...-.-...+..|+-. +.+|- -++-++| +|+-+++||.. .++.
T Consensus 433 hVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyi--RSckL~p------dgrtLivGGea--------------stls 490 (705)
T KOG0639|consen 433 HVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYI--RSCKLLP------DGRTLIVGGEA--------------STLS 490 (705)
T ss_pred eeEecCCCeEEEeeccCCCCCCccccccccCcccce--eeeEecC------CCceEEecccc--------------ceee
Confidence 444433345778887542110111122211 33454 2455666 89999999973 1233
Q ss_pred EEEecCCCCCceec-CCCcceeeeeeEEecCCcEEEEcCccCCCCCcccCCCCccccEEEeCCCCCCceeccCCCCCccc
Q 044265 282 RIIATSADPTWEME-DMPFGRIMGDMVMLPTGDVLIINGAQAGTQGFEMASNPCLFPVLYRPTQPAGLRFMTLNPGTIPR 360 (517)
Q Consensus 282 ~id~~~~~~~W~~~-~m~~~R~~~~~v~lpdG~v~v~GG~~~g~~g~~~~~~~~~~~e~YdP~t~~g~~W~~~~~~~~~R 360 (517)
++|+..++..-..+ +-..+-+++- .+-||-||...-=.+ | .+.+||-... +- +....---
T Consensus 491 iWDLAapTprikaeltssapaCyAL-a~spDakvcFsccsd-G------------nI~vwDLhnq---~~--VrqfqGht 551 (705)
T KOG0639|consen 491 IWDLAAPTPRIKAELTSSAPACYAL-AISPDAKVCFSCCSD-G------------NIAVWDLHNQ---TL--VRQFQGHT 551 (705)
T ss_pred eeeccCCCcchhhhcCCcchhhhhh-hcCCccceeeeeccC-C------------cEEEEEcccc---ee--eecccCCC
Confidence 56665444433333 3333445544 344788877653221 2 2577887655 22 11111111
Q ss_pred cccceeeecCCCcEEEecCCCc
Q 044265 361 MYHSTANLLPDGRVLIAGSNPH 382 (517)
Q Consensus 361 ~yhs~a~ll~dG~V~v~GG~~~ 382 (517)
-..++..+-.||.-+=+||-++
T Consensus 552 DGascIdis~dGtklWTGGlDn 573 (705)
T KOG0639|consen 552 DGASCIDISKDGTKLWTGGLDN 573 (705)
T ss_pred CCceeEEecCCCceeecCCCcc
Confidence 2234455667898888888654
No 168
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=45.23 E-value=3.4e+02 Score=27.33 Aligned_cols=164 Identities=13% Similarity=0.167 Sum_probs=84.0
Q ss_pred EEEEECCCCCeEEccccCCCcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccCcCccceeEEc
Q 044265 71 SAILDLQTNQIRPLMILTDTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVNGRWYGTDQIL 150 (517)
Q Consensus 71 ~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~~s~~~L 150 (517)
....+..+|+..+.-..|...-.+-.+-+-+..++.|+.+ ++++.||.. ..+-. .-|...+ .+.++.-
T Consensus 82 IryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D---~tvrLWDlR----~~~cq----g~l~~~~-~pi~AfD 149 (311)
T KOG1446|consen 82 IRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLD---KTVRLWDLR----VKKCQ----GLLNLSG-RPIAAFD 149 (311)
T ss_pred eEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccC---CeEEeeEec----CCCCc----eEEecCC-CcceeEC
Confidence 3344444555544444455544444555667888887765 789999987 33322 2244333 4667788
Q ss_pred CCCcEEEEcCCCCCceEEe-CC--CCCce-eccchhhccccccCCCCceEEEccCCcEEEEECC--ceEEEeCCCCeEEE
Q 044265 151 PDGSVIILGGKGANTVEYY-PP--RNGAV-SFPFLADVEDKQMDNLYPYVHLLPNGHLFIFAND--KAVMYDYETNKIAR 224 (517)
Q Consensus 151 ~dG~v~vvGG~~~~~~E~y-P~--~~~w~-~~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~Gg~--~~~~ydp~t~~w~~ 224 (517)
|.|-||++|=..+ .+.+| -+ ..+-. ........ .. .+-.+-..+|||..++.-+ ...+.|.-+++...
T Consensus 150 p~GLifA~~~~~~-~IkLyD~Rs~dkgPF~tf~i~~~~----~~-ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~ 223 (311)
T KOG1446|consen 150 PEGLIFALANGSE-LIKLYDLRSFDKGPFTTFSITDND----EA-EWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKS 223 (311)
T ss_pred CCCcEEEEecCCC-eEEEEEecccCCCCceeEccCCCC----cc-ceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEee
Confidence 8999999874332 45555 22 11111 11110000 00 1123445678987776643 34566766665443
Q ss_pred ecCCCCCCCCCCCCCCceeeeecccCccccEEEEEcC
Q 044265 225 EYPPLDGGPRNYPSAGSSAMLALEGDFATAVIVVCGG 261 (517)
Q Consensus 225 ~~p~~p~~~r~~~~~g~~v~l~~~~~~~~gkI~v~GG 261 (517)
.+..-|. .-..+ +.+.+.| +++.+++|-
T Consensus 224 tfs~~~~-~~~~~--~~a~ftP------ds~Fvl~gs 251 (311)
T KOG1446|consen 224 TFSGYPN-AGNLP--LSATFTP------DSKFVLSGS 251 (311)
T ss_pred eEeeccC-CCCcc--eeEEECC------CCcEEEEec
Confidence 3322121 11222 4565666 777555543
No 169
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=45.22 E-value=4.2e+02 Score=28.49 Aligned_cols=26 Identities=15% Similarity=0.259 Sum_probs=18.7
Q ss_pred ccCCcEEEEEC-CceEEEeCCCCe--EEE
Q 044265 199 LPNGHLFIFAN-DKAVMYDYETNK--IAR 224 (517)
Q Consensus 199 ~~~G~iyv~Gg-~~~~~ydp~t~~--w~~ 224 (517)
+.+|+||+... ..+..+|.++++ |..
T Consensus 59 v~~g~vy~~~~~g~l~AlD~~tG~~~W~~ 87 (488)
T cd00216 59 VVDGDMYFTTSHSALFALDAATGKVLWRY 87 (488)
T ss_pred EECCEEEEeCCCCcEEEEECCCChhhcee
Confidence 44889888754 567889998764 764
No 170
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.85 E-value=2.5e+02 Score=29.11 Aligned_cols=111 Identities=19% Similarity=0.298 Sum_probs=69.7
Q ss_pred CCcEEEecCCCCCCCeEEEecCCCCCCCCceEecc-Cc---cccCcCccceeEEcCC--CcEEEEcCCCCCceEEe-CCC
Q 044265 100 DGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELD-DV---ELVNGRWYGTDQILPD--GSVIILGGKGANTVEYY-PPR 172 (517)
Q Consensus 100 dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~-~~---~m~~~R~~~s~~~L~d--G~v~vvGG~~~~~~E~y-P~~ 172 (517)
+-.|+.+||... .+..++||.... ...|+.-. ++ .|..|-|-..+..|++ .+.|+.+-.. ..+.+| |..
T Consensus 160 ~p~Iva~GGke~-~n~lkiwdle~~--~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~-hqvR~YDt~~ 235 (412)
T KOG3881|consen 160 DPYIVATGGKEN-INELKIWDLEQS--KQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRY-HQVRLYDTRH 235 (412)
T ss_pred CCceEecCchhc-ccceeeeecccc--eeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecc-eeEEEecCcc
Confidence 456778888642 467888998743 56687541 11 3667889888889966 5777765432 347788 664
Q ss_pred CCc-e-eccchhhccccccCCCCceEEEccCCcEEEEECCc--eEEEeCCCCeE
Q 044265 173 NGA-V-SFPFLADVEDKQMDNLYPYVHLLPNGHLFIFANDK--AVMYDYETNKI 222 (517)
Q Consensus 173 ~~w-~-~~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~Gg~~--~~~ydp~t~~w 222 (517)
..- . ..+++.. . -.+..+.++|+..++|+.. ...||..+.+-
T Consensus 236 qRRPV~~fd~~E~-------~-is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl 281 (412)
T KOG3881|consen 236 QRRPVAQFDFLEN-------P-ISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKL 281 (412)
T ss_pred cCcceeEeccccC-------c-ceeeeecCCCcEEEEecccchhheecccCcee
Confidence 321 1 1222211 1 2246677899988888854 55789888754
No 171
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=44.00 E-value=2.6e+02 Score=28.99 Aligned_cols=89 Identities=19% Similarity=0.268 Sum_probs=47.9
Q ss_pred EEEEECCCCCeEE-ccccCCCcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccCcCccceeEE
Q 044265 71 SAILDLQTNQIRP-LMILTDTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVNGRWYGTDQI 149 (517)
Q Consensus 71 ~~~yDp~t~~w~~-l~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~~s~~~ 149 (517)
...||.+++.-.. +......+| ...++.-++++.|+.+ +.+++|||.++ ..+-... .-....-|-.++-.
T Consensus 283 Ik~WDletg~~~~~~~~~ksl~~--i~~~~~~~Ll~~gssd---r~irl~DPR~~--~gs~v~~--s~~gH~nwVssvkw 353 (423)
T KOG0313|consen 283 IKVWDLETGGLKSTLTTNKSLNC--ISYSPLSKLLASGSSD---RHIRLWDPRTG--DGSVVSQ--SLIGHKNWVSSVKW 353 (423)
T ss_pred EEEEEeecccceeeeecCcceeE--eecccccceeeecCCC---CceeecCCCCC--CCceeEE--eeecchhhhhheec
Confidence 6778887766543 222223334 3456678899999875 78999999954 2222221 11222334444333
Q ss_pred cC-CCcEEEEcCCCCCceEEe
Q 044265 150 LP-DGSVIILGGKGANTVEYY 169 (517)
Q Consensus 150 L~-dG~v~vvGG~~~~~~E~y 169 (517)
-+ +-..|+-| ...+++.+|
T Consensus 354 sp~~~~~~~S~-S~D~t~klW 373 (423)
T KOG0313|consen 354 SPTNEFQLVSG-SYDNTVKLW 373 (423)
T ss_pred CCCCceEEEEE-ecCCeEEEE
Confidence 33 33445544 444556666
No 172
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=43.46 E-value=47 Score=21.31 Aligned_cols=29 Identities=24% Similarity=0.268 Sum_probs=20.8
Q ss_pred CCcccceeecCCCcEEEecCCCCCCCeEEEec
Q 044265 89 DTWCSSGQILADGTVLQTGGDLDGYKKIRKFS 120 (517)
Q Consensus 89 ~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~yd 120 (517)
..........+++..+++||.+ +.+++||
T Consensus 11 ~~~i~~i~~~~~~~~~~s~~~D---~~i~vwd 39 (39)
T PF00400_consen 11 SSSINSIAWSPDGNFLASGSSD---GTIRVWD 39 (39)
T ss_dssp SSSEEEEEEETTSSEEEEEETT---SEEEEEE
T ss_pred CCcEEEEEEecccccceeeCCC---CEEEEEC
Confidence 3344455667788999999875 6788886
No 173
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=42.81 E-value=4.7e+02 Score=28.34 Aligned_cols=75 Identities=16% Similarity=0.138 Sum_probs=43.1
Q ss_pred EecCCcEEEEcCccCCCCCcccCCCCccccEEEeCCCCCC--ceeccCCCCCccccccce-eeecCCCcEEEecCCCccc
Q 044265 308 MLPTGDVLIINGAQAGTQGFEMASNPCLFPVLYRPTQPAG--LRFMTLNPGTIPRMYHST-ANLLPDGRVLIAGSNPHYF 384 (517)
Q Consensus 308 ~lpdG~v~v~GG~~~g~~g~~~~~~~~~~~e~YdP~t~~g--~~W~~~~~~~~~R~yhs~-a~ll~dG~V~v~GG~~~~~ 384 (517)
.-.||++|+.=|.+. +.-+||-..-.- ..|+-+. -.|.++ ++..||.+|+++|-....+
T Consensus 372 FS~dg~~LlSRg~D~-------------tLKvWDLrq~kkpL~~~tgL~-----t~~~~tdc~FSPd~kli~TGtS~~~~ 433 (641)
T KOG0772|consen 372 FSYDGNYLLSRGFDD-------------TLKVWDLRQFKKPLNVRTGLP-----TPFPGTDCCFSPDDKLILTGTSAPNG 433 (641)
T ss_pred eccccchhhhccCCC-------------ceeeeeccccccchhhhcCCC-----ccCCCCccccCCCceEEEecccccCC
Confidence 346999998877652 235666543210 0344332 223332 5678999999999754321
Q ss_pred cccCCCCCCceeeEEEeCCccCC
Q 044265 385 YKFNAEFPTELRIEAFSPEYLSS 407 (517)
Q Consensus 385 ~~~~~~~~~~~~vE~y~P~yl~~ 407 (517)
. +...+.+|++-.|..
T Consensus 434 -----~--~~g~L~f~d~~t~d~ 449 (641)
T KOG0772|consen 434 -----M--TAGTLFFFDRMTLDT 449 (641)
T ss_pred -----C--CCceEEEEeccceee
Confidence 1 133577788777643
No 174
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=42.21 E-value=3.2e+02 Score=26.25 Aligned_cols=111 Identities=19% Similarity=0.281 Sum_probs=55.6
Q ss_pred CCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccCcCccceeEEcC-CCcEEEEcCCCCCceEEe-CCCCCce-
Q 044265 100 DGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVNGRWYGTDQILP-DGSVIILGGKGANTVEYY-PPRNGAV- 176 (517)
Q Consensus 100 dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~~s~~~L~-dG~v~vvGG~~~~~~E~y-P~~~~w~- 176 (517)
.|.|++.||..+ .++++-|-.. ..-+.. +. ..-.|-.+... +|-+|+ .|+...++.+| -.-+...
T Consensus 151 ~~~il~s~gagd--c~iy~tdc~~---g~~~~a-----~s-ghtghilalyswn~~m~~-sgsqdktirfwdlrv~~~v~ 218 (350)
T KOG0641|consen 151 GGAILASAGAGD--CKIYITDCGR---GQGFHA-----LS-GHTGHILALYSWNGAMFA-SGSQDKTIRFWDLRVNSCVN 218 (350)
T ss_pred CceEEEecCCCc--ceEEEeecCC---CCccee-----ec-CCcccEEEEEEecCcEEE-ccCCCceEEEEeeeccceee
Confidence 578999998643 5555555441 111211 11 11122222211 565655 55555778887 3322221
Q ss_pred eccchhhcccc-ccCCCCceEEEccCCcEEEEEC--CceEEEeCCCCeEEE
Q 044265 177 SFPFLADVEDK-QMDNLYPYVHLLPNGHLFIFAN--DKAVMYDYETNKIAR 224 (517)
Q Consensus 177 ~~~~l~~t~~~-~~~~~yp~~~~~~~G~iyv~Gg--~~~~~ydp~t~~w~~ 224 (517)
.+.. ...+. .+...-..+++-|.|++++.|- .+..+||.+.++-.+
T Consensus 219 ~l~~--~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq 267 (350)
T KOG0641|consen 219 TLDN--DFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQ 267 (350)
T ss_pred eccC--cccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceee
Confidence 1100 00000 1111122345557899999986 567899999887543
No 175
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=42.10 E-value=2.2e+02 Score=31.74 Aligned_cols=84 Identities=17% Similarity=0.378 Sum_probs=42.5
Q ss_pred eEEEEECCCCCeEEccccCCCcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccC-cCccceeE
Q 044265 70 HSAILDLQTNQIRPLMILTDTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVN-GRWYGTDQ 148 (517)
Q Consensus 70 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~-~R~~~s~~ 148 (517)
....||.. +....-...|..|-.+....+++.++|.=|.+ +++++|+-. .+. +. -.++. .-| ++.
T Consensus 201 ~Ir~w~~~-ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gED---rtlriW~~~----e~~--q~--I~lPttsiW--sa~ 266 (745)
T KOG0301|consen 201 SIRLWDLD-GEVLLEMHGHTNFVYSISMALSDGLIVSTGED---RTLRIWKKD----ECV--QV--ITLPTTSIW--SAK 266 (745)
T ss_pred eEEEEecc-CceeeeeeccceEEEEEEecCCCCeEEEecCC---ceEEEeecC----ceE--EE--EecCccceE--EEE
Confidence 45555552 22222222344444344445555666665553 678888754 221 11 12332 334 456
Q ss_pred EcCCCcEEEEcCCCCCceEEe
Q 044265 149 ILPDGSVIILGGKGANTVEYY 169 (517)
Q Consensus 149 ~L~dG~v~vvGG~~~~~~E~y 169 (517)
+|.+|.| |+||+++. +.+|
T Consensus 267 ~L~NgDI-vvg~SDG~-VrVf 285 (745)
T KOG0301|consen 267 VLLNGDI-VVGGSDGR-VRVF 285 (745)
T ss_pred EeeCCCE-EEeccCce-EEEE
Confidence 7778888 55777652 4444
No 176
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=41.87 E-value=2e+02 Score=30.09 Aligned_cols=77 Identities=23% Similarity=0.238 Sum_probs=43.5
Q ss_pred CCceEEcccCcccceeEEEEeeCCEEEEEeccCCCCCCcccCCCcccccccccccccCCcceEEEEECCCCCeEEccccC
Q 044265 9 PGTWELVLADAGISSMHTAVTRFNTVVLLDRTNIGPSRKMLGRGRCRLDRNDRALKRDCYAHSAILDLQTNQIRPLMILT 88 (517)
Q Consensus 9 ~g~W~~~~~~~~~~~~h~~ll~~gkv~~~gg~~~g~~~~~~~~G~~~~~~~~~~~~~d~~~~~~~yDp~t~~w~~l~~~~ 88 (517)
.+.|..-..+.+.++-|-.-.+||+.+.+.....| |. ..++..|||.|.+-+.+..+
T Consensus 226 ~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~--------~~--------------~~~i~~~d~~t~~~~~~~~~- 282 (386)
T PF14583_consen 226 SNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPG--------GQ--------------DFWIAGYDPDTGERRRLMEM- 282 (386)
T ss_dssp ---EESS---TTEEEEEEEE-TTSS-EEEEEEETT--------T----------------EEEEEE-TTT--EEEEEEE-
T ss_pred CcceeeecCCCCcccccccccCCCCEEEEEeecCC--------CC--------------ceEEEeeCCCCCCceEEEeC-
Confidence 34444443445777889999999998888654211 21 13688899999876655433
Q ss_pred CCcccceeecCCCcEEEecCC
Q 044265 89 DTWCSSGQILADGTVLQTGGD 109 (517)
Q Consensus 89 ~~~c~~~~~l~dG~l~v~GG~ 109 (517)
.+|..-..-.||+++|-=|.
T Consensus 283 -p~~~H~~ss~Dg~L~vGDG~ 302 (386)
T PF14583_consen 283 -PWCSHFMSSPDGKLFVGDGG 302 (386)
T ss_dssp --SEEEEEE-TTSSEEEEEE-
T ss_pred -CceeeeEEcCCCCEEEecCC
Confidence 46888788899999875554
No 177
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=41.55 E-value=3.3e+02 Score=26.18 Aligned_cols=36 Identities=25% Similarity=0.460 Sum_probs=22.0
Q ss_pred eeecCCCcEEEecCCCcc--ccccCCCCCCceeeEEEeCCcc
Q 044265 366 ANLLPDGRVLIAGSNPHY--FYKFNAEFPTELRIEAFSPEYL 405 (517)
Q Consensus 366 a~ll~dG~V~v~GG~~~~--~~~~~~~~~~~~~vE~y~P~yl 405 (517)
+++-|.||+++.|-.+.. -|+.-|.. -|+.|.|..-
T Consensus 237 v~vdpsgrll~sg~~dssc~lydirg~r----~iq~f~phsa 274 (350)
T KOG0641|consen 237 VAVDPSGRLLASGHADSSCMLYDIRGGR----MIQRFHPHSA 274 (350)
T ss_pred EEECCCcceeeeccCCCceEEEEeeCCc----eeeeeCCCcc
Confidence 456799999999976533 33333322 2566666553
No 178
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=41.45 E-value=4.6e+02 Score=27.86 Aligned_cols=31 Identities=16% Similarity=0.415 Sum_probs=23.5
Q ss_pred EEEccCCcEEEEECC--ceEEEeCCCCeEEEec
Q 044265 196 VHLLPNGHLFIFAND--KAVMYDYETNKIAREY 226 (517)
Q Consensus 196 ~~~~~~G~iyv~Gg~--~~~~ydp~t~~w~~~~ 226 (517)
.++..||.+++.|+. .+-+||+.+.+-.+.+
T Consensus 283 Lais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl 315 (476)
T KOG0646|consen 283 LAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTL 315 (476)
T ss_pred EEEecCccEEEeeCCCCCEEEEecchHHHHHHH
Confidence 455569999999984 5789999887765543
No 179
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.07 E-value=6.4e+02 Score=29.40 Aligned_cols=88 Identities=16% Similarity=0.157 Sum_probs=51.0
Q ss_pred EEEEECCCCCeEEccccCCCcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccCcCccceeEEc
Q 044265 71 SAILDLQTNQIRPLMILTDTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVNGRWYGTDQIL 150 (517)
Q Consensus 71 ~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~~s~~~L 150 (517)
..+||..-++...--..|+.-..+..+-+.+-++|.||.+ ..|.+|+.+.. .|.++-. ..|- |--.+..
T Consensus 33 IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDD---ykIkVWnYk~r--rclftL~--GHlD----YVRt~~F 101 (1202)
T KOG0292|consen 33 IQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDD---YKIKVWNYKTR--RCLFTLL--GHLD----YVRTVFF 101 (1202)
T ss_pred eeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCc---cEEEEEecccc--eehhhhc--cccc----eeEEeec
Confidence 3444444333322222344444455666788999999975 56777766522 4555444 3443 3334444
Q ss_pred CCCcEEEEcCCCCCceEEe
Q 044265 151 PDGSVIILGGKGANTVEYY 169 (517)
Q Consensus 151 ~dG~v~vvGG~~~~~~E~y 169 (517)
..-.=+|+.-++..++.+|
T Consensus 102 HheyPWIlSASDDQTIrIW 120 (1202)
T KOG0292|consen 102 HHEYPWILSASDDQTIRIW 120 (1202)
T ss_pred cCCCceEEEccCCCeEEEE
Confidence 4556678888877788887
No 180
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=40.47 E-value=1.7e+02 Score=31.15 Aligned_cols=86 Identities=19% Similarity=0.178 Sum_probs=53.6
Q ss_pred CCcceEEEEECCCCCeEEccccCCCcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccCcCccc
Q 044265 66 DCYAHSAILDLQTNQIRPLMILTDTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVNGRWYG 145 (517)
Q Consensus 66 d~~~~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~~ 145 (517)
|......++|..+++-+.+......-+ .....+||+-+++.-...|...+.++|+.. .+=+.+ .....++ .
T Consensus 259 dg~~~iy~~dl~~~~~~~Lt~~~gi~~-~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g----~~~~ri---T~~~~~~-~ 329 (425)
T COG0823 259 DGSPDIYLMDLDGKNLPRLTNGFGINT-SPSWSPDGSKIVFTSDRGGRPQIYLYDLEG----SQVTRL---TFSGGGN-S 329 (425)
T ss_pred CCCccEEEEcCCCCcceecccCCcccc-CccCCCCCCEEEEEeCCCCCcceEEECCCC----CceeEe---eccCCCC-c
Confidence 445678899999988655544333323 566789999888875555667899999883 333443 1111221 1
Q ss_pred eeEEcCCCcEEEEcC
Q 044265 146 TDQILPDGSVIILGG 160 (517)
Q Consensus 146 s~~~L~dG~v~vvGG 160 (517)
....-+||+.+++=+
T Consensus 330 ~p~~SpdG~~i~~~~ 344 (425)
T COG0823 330 NPVWSPDGDKIVFES 344 (425)
T ss_pred CccCCCCCCEEEEEe
Confidence 333456888887754
No 181
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=40.28 E-value=82 Score=34.67 Aligned_cols=86 Identities=16% Similarity=0.060 Sum_probs=49.8
Q ss_pred eEEEEECCCCCeEEccccCCCcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccCcCccceeEE
Q 044265 70 HSAILDLQTNQIRPLMILTDTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVNGRWYGTDQI 149 (517)
Q Consensus 70 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~~s~~~ 149 (517)
.+++||..+.+-..--..|..---+.+-.+||+.+.+=+.+ ..+++|+|..+ ...-.+. .-.-..|.---.-+
T Consensus 701 Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKD---g~~rVy~Prs~--e~pv~Eg--~gpvgtRgARi~wa 773 (1012)
T KOG1445|consen 701 TIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKD---GTLRVYEPRSR--EQPVYEG--KGPVGTRGARILWA 773 (1012)
T ss_pred eeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecC---ceEEEeCCCCC--CCccccC--CCCccCcceeEEEE
Confidence 46777777665443333333222244566788877766543 57999999832 2222333 11222454334445
Q ss_pred cCCCcEEEEcCCCC
Q 044265 150 LPDGSVIILGGKGA 163 (517)
Q Consensus 150 L~dG~v~vvGG~~~ 163 (517)
+ ||+++|+-|++.
T Consensus 774 c-dgr~viv~Gfdk 786 (1012)
T KOG1445|consen 774 C-DGRIVIVVGFDK 786 (1012)
T ss_pred e-cCcEEEEecccc
Confidence 6 999999999875
No 182
>PRK01029 tolB translocation protein TolB; Provisional
Probab=40.18 E-value=4.7e+02 Score=27.60 Aligned_cols=59 Identities=10% Similarity=0.038 Sum_probs=36.7
Q ss_pred ceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccCcCccceeEEcCCCcEEEEcC
Q 044265 94 SGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVNGRWYGTDQILPDGSVIILGG 160 (517)
Q Consensus 94 ~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~~s~~~L~dG~v~vvGG 160 (517)
.....+||+.+++.....+...+.+||+. +.+...+ ..- .+........+||+.+++..
T Consensus 331 ~p~wSPDG~~Laf~~~~~g~~~I~v~dl~----~g~~~~L--t~~--~~~~~~p~wSpDG~~L~f~~ 389 (428)
T PRK01029 331 CPAWSPDGKKIAFCSVIKGVRQICVYDLA----TGRDYQL--TTS--PENKESPSWAIDSLHLVYSA 389 (428)
T ss_pred ceeECCCCCEEEEEEcCCCCcEEEEEECC----CCCeEEc--cCC--CCCccceEECCCCCEEEEEE
Confidence 44567899877765554455789999998 5666655 211 22223445567888666543
No 183
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=40.04 E-value=22 Score=26.06 Aligned_cols=16 Identities=31% Similarity=0.601 Sum_probs=12.7
Q ss_pred eeecCCCcEEEecCCC
Q 044265 366 ANLLPDGRVLIAGSNP 381 (517)
Q Consensus 366 a~ll~dG~V~v~GG~~ 381 (517)
..+.+||||+++|...
T Consensus 6 ~~~q~DGkIlv~G~~~ 21 (55)
T TIGR02608 6 VAVQSDGKILVAGYVD 21 (55)
T ss_pred EEECCCCcEEEEEEee
Confidence 4567999999999653
No 184
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=39.98 E-value=4.3e+02 Score=27.05 Aligned_cols=136 Identities=13% Similarity=0.143 Sum_probs=71.1
Q ss_pred EccCCcEEEEE-CCceEEEeCCCCe--EEEecCCCCCCCCCCCCCCceeeeecccCccccEEEEEcCCcCCcccccCCCC
Q 044265 198 LLPNGHLFIFA-NDKAVMYDYETNK--IAREYPPLDGGPRNYPSAGSSAMLALEGDFATAVIVVCGGAQFGAFIQRSTDT 274 (517)
Q Consensus 198 ~~~~G~iyv~G-g~~~~~ydp~t~~--w~~~~p~~p~~~r~~~~~g~~v~l~~~~~~~~gkI~v~GG~~~~~~~~~~~~~ 274 (517)
+..||+||+.. ...+..+|+.+++ |...+. . ..... ..-++. .+|+||+-.. + +
T Consensus 65 ~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~--~--~~~~~--~~~~~~------~~G~i~~g~~-~-g--------- 121 (370)
T COG1520 65 ADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLL--G--AVAQL--SGPILG------SDGKIYVGSW-D-G--------- 121 (370)
T ss_pred EeeCCeEEEecCCCcEEEEeCCCCcEEecccCc--C--cceec--cCceEE------eCCeEEEecc-c-c---------
Confidence 34588899863 2357789999876 764221 1 01111 111122 2688765332 2 1
Q ss_pred CCCCceeEEEecCCCCCceec-CCCcceeeeeeEEecCCcEEEEcCccCCCCCcccCCCCccccEEEeCCCCCCceeccC
Q 044265 275 PAHGSCGRIIATSADPTWEME-DMPFGRIMGDMVMLPTGDVLIINGAQAGTQGFEMASNPCLFPVLYRPTQPAGLRFMTL 353 (517)
Q Consensus 275 ~a~~s~~~id~~~~~~~W~~~-~m~~~R~~~~~v~lpdG~v~v~GG~~~g~~g~~~~~~~~~~~e~YdP~t~~g~~W~~~ 353 (517)
...++|..+....|+.. ... .+.... .+..|++||+.... + .+.+.|+++. ..+|+.-
T Consensus 122 ----~~y~ld~~~G~~~W~~~~~~~-~~~~~~-~v~~~~~v~~~s~~--g------------~~~al~~~tG-~~~W~~~ 180 (370)
T COG1520 122 ----KLYALDASTGTLVWSRNVGGS-PYYASP-PVVGDGTVYVGTDD--G------------HLYALNADTG-TLKWTYE 180 (370)
T ss_pred ----eEEEEECCCCcEEEEEecCCC-eEEecC-cEEcCcEEEEecCC--C------------eEEEEEccCC-cEEEEEe
Confidence 23456664446678875 443 555545 45569999987511 1 2355666654 2367733
Q ss_pred CCC-CccccccceeeecCCCcEEEecC
Q 044265 354 NPG-TIPRMYHSTANLLPDGRVLIAGS 379 (517)
Q Consensus 354 ~~~-~~~R~yhs~a~ll~dG~V~v~GG 379 (517)
.+. ...+.+-+.+ .-+|.||+..-
T Consensus 181 ~~~~~~~~~~~~~~--~~~~~vy~~~~ 205 (370)
T COG1520 181 TPAPLSLSIYGSPA--IASGTVYVGSD 205 (370)
T ss_pred cCCccccccccCce--eecceEEEecC
Confidence 222 2333332222 46778877754
No 185
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=39.97 E-value=5.1e+02 Score=28.10 Aligned_cols=109 Identities=13% Similarity=0.192 Sum_probs=59.7
Q ss_pred cccCcCccceeEEc-CCCcEEEEcCCCCCceEEeCCCCCceeccchhhccccc-cCCCCceEEEccCCcEEEEEC--Cce
Q 044265 137 ELVNGRWYGTDQIL-PDGSVIILGGKGANTVEYYPPRNGAVSFPFLADVEDKQ-MDNLYPYVHLLPNGHLFIFAN--DKA 212 (517)
Q Consensus 137 ~m~~~R~~~s~~~L-~dG~v~vvGG~~~~~~E~yP~~~~w~~~~~l~~t~~~~-~~~~yp~~~~~~~G~iyv~Gg--~~~ 212 (517)
.+.-.|--+++|+. +||+. |.+|....++.+|-. .+|...|.+. .++++ +..---......||++++.-| .+.
T Consensus 312 ~~~g~Rv~~tsC~~nrdg~~-iAagc~DGSIQ~W~~-~~~~v~p~~~-vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tL 388 (641)
T KOG0772|consen 312 PAGGKRVPVTSCAWNRDGKL-IAAGCLDGSIQIWDK-GSRTVRPVMK-VKDAHLPGQDITSISFSYDGNYLLSRGFDDTL 388 (641)
T ss_pred cCCCcccCceeeecCCCcch-hhhcccCCceeeeec-CCcccccceE-eeeccCCCCceeEEEeccccchhhhccCCCce
Confidence 45566777777665 47777 677777778888832 2343333221 12211 101112345567999888755 457
Q ss_pred EEEeCCCC-----eEEEecCCCCCCCCCCCCCCceeeeecccCccccEEEEEcCC
Q 044265 213 VMYDYETN-----KIAREYPPLDGGPRNYPSAGSSAMLALEGDFATAVIVVCGGA 262 (517)
Q Consensus 213 ~~ydp~t~-----~w~~~~p~~p~~~r~~~~~g~~v~l~~~~~~~~gkI~v~GG~ 262 (517)
.+||.+.- .|+ -+ + ..|+.+ -+..-| +.+|++.|-.
T Consensus 389 KvWDLrq~kkpL~~~t-gL---~---t~~~~t-dc~FSP------d~kli~TGtS 429 (641)
T KOG0772|consen 389 KVWDLRQFKKPLNVRT-GL---P---TPFPGT-DCCFSP------DDKLILTGTS 429 (641)
T ss_pred eeeeccccccchhhhc-CC---C---ccCCCC-ccccCC------CceEEEeccc
Confidence 78887652 333 12 2 224422 233333 8899888865
No 186
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=39.40 E-value=48 Score=20.72 Aligned_cols=17 Identities=24% Similarity=0.180 Sum_probs=11.1
Q ss_pred eEEE-EeeCCEEEEEecc
Q 044265 24 MHTA-VTRFNTVVLLDRT 40 (517)
Q Consensus 24 ~h~~-ll~~gkv~~~gg~ 40 (517)
.|+. |..+|+||.||..
T Consensus 9 ~ht~al~~~g~v~~wG~n 26 (30)
T PF13540_consen 9 YHTCALTSDGEVYCWGDN 26 (30)
T ss_dssp SEEEEEE-TTEEEEEE--
T ss_pred CEEEEEEcCCCEEEEcCC
Confidence 4665 4569999999964
No 187
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.12 E-value=1.9e+02 Score=28.99 Aligned_cols=83 Identities=18% Similarity=0.259 Sum_probs=52.5
Q ss_pred eEEEEECCCCCeEE-ccc-cCCCcccceeecCCCcEE-EecCCCC-CCCeEEEecCCCCCCCCceEeccCcccc-CcCcc
Q 044265 70 HSAILDLQTNQIRP-LMI-LTDTWCSSGQILADGTVL-QTGGDLD-GYKKIRKFSPCEANGLCDWVELDDVELV-NGRWY 144 (517)
Q Consensus 70 ~~~~yDp~t~~w~~-l~~-~~~~~c~~~~~l~dG~l~-v~GG~~~-g~~~v~~ydp~~~~~t~~W~~~~~~~m~-~~R~~ 144 (517)
.+.+||+.+.+--. +.. ....|+..+++.+||+++ .+=+..+ ..--+-+||-. ..+... .+.+ ..-.-
T Consensus 92 f~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r-----~~fqrv--gE~~t~GiGp 164 (366)
T COG3490 92 FAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR-----EGFQRV--GEFSTHGIGP 164 (366)
T ss_pred eEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecc-----ccccee--cccccCCcCc
Confidence 57789998766433 222 334688889999999865 4444333 23457788875 344444 2322 23345
Q ss_pred ceeEEcCCCcEEEEc
Q 044265 145 GTDQILPDGSVIILG 159 (517)
Q Consensus 145 ~s~~~L~dG~v~vvG 159 (517)
|-+..++||+.+++-
T Consensus 165 Hev~lm~DGrtlvva 179 (366)
T COG3490 165 HEVTLMADGRTLVVA 179 (366)
T ss_pred ceeEEecCCcEEEEe
Confidence 678889999998873
No 188
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=38.06 E-value=90 Score=25.32 Aligned_cols=80 Identities=15% Similarity=0.069 Sum_probs=38.5
Q ss_pred EEeeC-CEEEEEeccCCCCCCcccCCCcccccccccccccCCcceEEEEECCCCCeEEccccCCCcccceeecCCCcEEE
Q 044265 27 AVTRF-NTVVLLDRTNIGPSRKMLGRGRCRLDRNDRALKRDCYAHSAILDLQTNQIRPLMILTDTWCSSGQILADGTVLQ 105 (517)
Q Consensus 27 ~ll~~-gkv~~~gg~~~g~~~~~~~~G~~~~~~~~~~~~~d~~~~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~v 105 (517)
.+..+ |+||+-+.+.. .. -..... ...+.++......|||.|++.+-+... -.|-.+.++..|+.-++
T Consensus 4 dv~~~~g~vYfTdsS~~----~~--~~~~~~----~~le~~~~GRll~ydp~t~~~~vl~~~-L~fpNGVals~d~~~vl 72 (89)
T PF03088_consen 4 DVDQDTGTVYFTDSSSR----YD--RRDWVY----DLLEGRPTGRLLRYDPSTKETTVLLDG-LYFPNGVALSPDESFVL 72 (89)
T ss_dssp EE-TTT--EEEEES-SS--------TTGHHH----HHHHT---EEEEEEETTTTEEEEEEEE-ESSEEEEEE-TTSSEEE
T ss_pred eEecCCCEEEEEeCccc----cC--ccceee----eeecCCCCcCEEEEECCCCeEEEehhC-CCccCeEEEcCCCCEEE
Confidence 34566 99999987431 11 011100 122334566788999999999876532 12344555667887444
Q ss_pred ecCCCCCCCeEEEe
Q 044265 106 TGGDLDGYKKIRKF 119 (517)
Q Consensus 106 ~GG~~~g~~~v~~y 119 (517)
+-= .....|..|
T Consensus 73 v~E--t~~~Ri~ry 84 (89)
T PF03088_consen 73 VAE--TGRYRILRY 84 (89)
T ss_dssp EEE--GGGTEEEEE
T ss_pred EEe--ccCceEEEE
Confidence 421 123455555
No 189
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=37.34 E-value=3.8e+02 Score=28.60 Aligned_cols=107 Identities=9% Similarity=0.152 Sum_probs=58.4
Q ss_pred eeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccCcCccceeEEcCCC-cEEEEcCCCCCceEEe-CCC
Q 044265 95 GQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVNGRWYGTDQILPDG-SVIILGGKGANTVEYY-PPR 172 (517)
Q Consensus 95 ~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~~s~~~L~dG-~v~vvGG~~~~~~E~y-P~~ 172 (517)
.....+|+=+...|++ +.+.+||.+ +.+-. ..|...+--.++-.-+|+ .+|++||.+.. +-.| -.+
T Consensus 264 ~~~s~~g~~fLS~sfD---~~lKlwDtE----TG~~~----~~f~~~~~~~cvkf~pd~~n~fl~G~sd~k-i~~wDiRs 331 (503)
T KOG0282|consen 264 ASFNNCGTSFLSASFD---RFLKLWDTE----TGQVL----SRFHLDKVPTCVKFHPDNQNIFLVGGSDKK-IRQWDIRS 331 (503)
T ss_pred hhccccCCeeeeeecc---eeeeeeccc----cceEE----EEEecCCCceeeecCCCCCcEEEEecCCCc-EEEEeccc
Confidence 3345578888888885 788999998 44433 234444433333344566 99999998753 3333 222
Q ss_pred CCceeccchhhccccccCCCCceEEEccCCcEEEEEC--CceEEEeCCCC
Q 044265 173 NGAVSFPFLADVEDKQMDNLYPYVHLLPNGHLFIFAN--DKAVMYDYETN 220 (517)
Q Consensus 173 ~~w~~~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~Gg--~~~~~ydp~t~ 220 (517)
+.. ++ .-+.+ ...--....+++|+-||... .++.+|+....
T Consensus 332 ~kv-----vq-eYd~h-Lg~i~~i~F~~~g~rFissSDdks~riWe~~~~ 374 (503)
T KOG0282|consen 332 GKV-----VQ-EYDRH-LGAILDITFVDEGRRFISSSDDKSVRIWENRIP 374 (503)
T ss_pred hHH-----HH-HHHhh-hhheeeeEEccCCceEeeeccCccEEEEEcCCC
Confidence 111 11 11100 00001133456888888765 45777776654
No 190
>PF10342 GPI-anchored: Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family; InterPro: IPR018466 This entry represents glycoproteins involved in cell wall (1-->6)-beta-glucan assembly. In yeast a null mutation leads to severe growth defects, aberrant multi-budded morphology, and mating defects [, ]. The entry includes DRMIP and Hesp-379, which are involved in both fruiting body formation and in host attack respectively. Hesp-379 is a haustorially expressed secreted protein; the haustorium being the small sucker that penetrates host tissue [].
Probab=37.11 E-value=2.1e+02 Score=22.56 Aligned_cols=72 Identities=19% Similarity=0.178 Sum_probs=42.0
Q ss_pred ceeecCCeEEEEEEecCCceeeEEEEEecCCcccccCcCCcceEEeeecccccCCCCcEEEEEeCCCCCCcCCCcceEEE
Q 044265 421 ETVRYGEAFDVFVTVPLPVVGILEVNLGNAPFATHSFQQGQRLVKITVTPSVPDANGRYRVGCTAPPNGAVAPPGYYMAF 500 (517)
Q Consensus 421 ~~~~~g~~~~v~~~~~~~~~~~~~v~l~~~~~~TH~~~~~qR~~~l~~~~~~~~~~~~~~~~v~~P~~~~~~ppG~ymlf 500 (517)
+.+..|+.++|+-+......+.+.+.|+.... +. -+-...|.- ...... .++++++|+ ++.+-+.|.|-
T Consensus 7 ~~~~~g~~~~I~W~~~~~~~~~~~I~L~~g~~-~~----~~~~~~ia~--~v~~~~--gs~~~~~p~--~l~~~~~Y~i~ 75 (93)
T PF10342_consen 7 TVWTAGQPITITWTSDGTDPGNVTIYLCNGNN-TN----LNFVQTIAS--NVSNSD--GSYTWTIPS--DLPSGGDYFIQ 75 (93)
T ss_pred CEEECCCcEEEEEeCCCCCCcEEEEEEEcCCC-CC----cceeEEEEe--cccCCC--CEEEEEcCC--CCCCCCcEEEE
Confidence 57889999999987543345678899987665 21 111222321 111121 256676674 56665667766
Q ss_pred EEc
Q 044265 501 VVN 503 (517)
Q Consensus 501 ~~~ 503 (517)
+++
T Consensus 76 ~~~ 78 (93)
T PF10342_consen 76 IVN 78 (93)
T ss_pred EEE
Confidence 665
No 191
>cd00604 IPT_CGTD IPT domain (domain D) of cyclodextrin glycosyltransferase (CGTase) and similar enzymes. These enzymes are involved in the enzymatic hydrolysis of alpha-1,4 linkages of starch polymers and belong to the glycosyl hydrolase family 13. Most consist of three domains (A,B,C) but CGTase is more complex and has two additional domains (D,E). The function of the IPT/D domain is unknown.
Probab=36.93 E-value=2e+02 Score=22.74 Aligned_cols=76 Identities=20% Similarity=0.166 Sum_probs=44.9
Q ss_pred CceecC-CceeecCCeEEEEEEecCCceeeEEEEEecCCcccccCcCCcceEEeeecccccCCCCcEEEEEeCCCCCCcC
Q 044265 414 PVIEEI-PETVRYGEAFDVFVTVPLPVVGILEVNLGNAPFATHSFQQGQRLVKITVTPSVPDANGRYRVGCTAPPNGAVA 492 (517)
Q Consensus 414 P~i~~~-p~~~~~g~~~~v~~~~~~~~~~~~~v~l~~~~~~TH~~~~~qR~~~l~~~~~~~~~~~~~~~~v~~P~~~~~~ 492 (517)
|.|.++ |..-..|++++|.-+--+. ...+|.+ +- ...++... . ...+++++|..
T Consensus 1 P~I~~i~P~~g~pG~~VtI~G~gFg~--~~~~V~~------------g~--~~a~v~s~---s--dt~I~~~VP~~---- 55 (81)
T cd00604 1 PLIGSVGPVMGKPGNTVTISGEGFGS--TGGTVYF------------GG--TAAEVLSW---S--DTSIVVEVPRV---- 55 (81)
T ss_pred CeEeeEcCCCCCCCCEEEEEEECCCC--CccEEEE------------CC--EEEEEEEE---C--CCEEEEEeCCC----
Confidence 667776 6767789999887542221 1122222 11 22233221 1 25888888843
Q ss_pred CCcceEEEEEc-CCcCcccEEEE
Q 044265 493 PPGYYMAFVVN-QGVPSVARWVH 514 (517)
Q Consensus 493 ppG~ymlf~~~-~gvPS~a~~v~ 514 (517)
++|.|-+.|.. +|.=|.+--.+
T Consensus 56 ~~g~~~i~V~~~~G~~Sn~~~f~ 78 (81)
T cd00604 56 APGNYNISVTTVDGVTSNGYNFE 78 (81)
T ss_pred CCCceEEEEEECCCcccCcEeEE
Confidence 57999999986 88877765443
No 192
>PRK01029 tolB translocation protein TolB; Provisional
Probab=35.20 E-value=2.2e+02 Score=30.18 Aligned_cols=60 Identities=13% Similarity=-0.032 Sum_probs=39.0
Q ss_pred ceEEEEECCCCCeEEccccCCCcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEec
Q 044265 69 AHSAILDLQTNQIRPLMILTDTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVEL 133 (517)
Q Consensus 69 ~~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~ 133 (517)
....+||+.+++.+.+... ..........+||+.+++-....+...+.++|.. +.+...+
T Consensus 351 ~~I~v~dl~~g~~~~Lt~~-~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~----~g~~~~L 410 (428)
T PRK01029 351 RQICVYDLATGRDYQLTTS-PENKESPSWAIDSLHLVYSAGNSNESELYLISLI----TKKTRKI 410 (428)
T ss_pred cEEEEEECCCCCeEEccCC-CCCccceEECCCCCEEEEEECCCCCceEEEEECC----CCCEEEe
Confidence 3578899999999887643 2223445667899876654433344677788876 4555544
No 193
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.84 E-value=3.7e+02 Score=29.79 Aligned_cols=50 Identities=12% Similarity=0.054 Sum_probs=32.0
Q ss_pred eEEEEECCCCCeEEccccCCCcccceeecCCCcEEEecCCCCCCCeEEEecCC
Q 044265 70 HSAILDLQTNQIRPLMILTDTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPC 122 (517)
Q Consensus 70 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~ 122 (517)
.+-+||-+|++-.+....|..--+...+.+.=-|++.|+.+ .++++|+..
T Consensus 208 tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsED---GTvriWhs~ 257 (794)
T KOG0276|consen 208 TIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSED---GTVRIWNSK 257 (794)
T ss_pred eEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCC---ccEEEecCc
Confidence 47789999887655444443333344455566678887764 478889755
No 194
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=34.23 E-value=1.7e+02 Score=30.37 Aligned_cols=87 Identities=15% Similarity=0.143 Sum_probs=51.3
Q ss_pred eEEEEECCCCCeE-EccccCCCcccceeecCCCc-EEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccCcCcccee
Q 044265 70 HSAILDLQTNQIR-PLMILTDTWCSSGQILADGT-VLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVNGRWYGTD 147 (517)
Q Consensus 70 ~~~~yDp~t~~w~-~l~~~~~~~c~~~~~l~dG~-l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~~s~ 147 (517)
.+.+.|..|++.. .++..... .....+.+||+ +|+++ . + ..+.++|+. +.+- . ........-.+.
T Consensus 17 ~v~viD~~t~~~~~~i~~~~~~-h~~~~~s~Dgr~~yv~~-r-d--g~vsviD~~----~~~~--v--~~i~~G~~~~~i 83 (369)
T PF02239_consen 17 SVAVIDGATNKVVARIPTGGAP-HAGLKFSPDGRYLYVAN-R-D--GTVSVIDLA----TGKV--V--ATIKVGGNPRGI 83 (369)
T ss_dssp EEEEEETTT-SEEEEEE-STTE-EEEEE-TT-SSEEEEEE-T-T--SEEEEEETT----SSSE--E--EEEE-SSEEEEE
T ss_pred EEEEEECCCCeEEEEEcCCCCc-eeEEEecCCCCEEEEEc-C-C--CeEEEEECC----cccE--E--EEEecCCCcceE
Confidence 5677888877644 33333332 22334567887 66664 3 2 478999998 5552 2 345666666677
Q ss_pred EEcCCCcEEEEcCCCCCceEEe
Q 044265 148 QILPDGSVIILGGKGANTVEYY 169 (517)
Q Consensus 148 ~~L~dG~v~vvGG~~~~~~E~y 169 (517)
++-+||+.++++.....++.++
T Consensus 84 ~~s~DG~~~~v~n~~~~~v~v~ 105 (369)
T PF02239_consen 84 AVSPDGKYVYVANYEPGTVSVI 105 (369)
T ss_dssp EE--TTTEEEEEEEETTEEEEE
T ss_pred EEcCCCCEEEEEecCCCceeEe
Confidence 7788999988887666666666
No 195
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=34.21 E-value=2.2e+02 Score=30.67 Aligned_cols=83 Identities=19% Similarity=0.188 Sum_probs=57.2
Q ss_pred ceEEEEECCCCCeEEccc---cC-CCcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccCcCcc
Q 044265 69 AHSAILDLQTNQIRPLMI---LT-DTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVNGRWY 144 (517)
Q Consensus 69 ~~~~~yDp~t~~w~~l~~---~~-~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~ 144 (517)
.+..+|+++++......- .+ ..+--+.+++.||.++. | . ..-.+.+|++. ++.-++. .. ..+-.-
T Consensus 222 ~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviT-g-D--S~G~i~Iw~~~----~~~~~k~--~~-aH~ggv 290 (626)
T KOG2106|consen 222 GHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVIT-G-D--SGGNILIWSKG----TNRISKQ--VH-AHDGGV 290 (626)
T ss_pred ceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEe-e-c--CCceEEEEeCC----CceEEeE--ee-ecCCce
Confidence 477888998888765331 22 24444566788888754 3 2 22578899997 7777764 33 566677
Q ss_pred ceeEEcCCCcEEEEcCCCC
Q 044265 145 GTDQILPDGSVIILGGKGA 163 (517)
Q Consensus 145 ~s~~~L~dG~v~vvGG~~~ 163 (517)
.+.+.|.||.++- ||.+.
T Consensus 291 ~~L~~lr~GtllS-GgKDR 308 (626)
T KOG2106|consen 291 FSLCMLRDGTLLS-GGKDR 308 (626)
T ss_pred EEEEEecCccEee-cCccc
Confidence 8899999999988 98763
No 196
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=33.20 E-value=1.9e+02 Score=33.18 Aligned_cols=83 Identities=17% Similarity=0.216 Sum_probs=46.4
Q ss_pred cceEEEEECCCCC--eEE-ccccC---------------CCcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCc
Q 044265 68 YAHSAILDLQTNQ--IRP-LMILT---------------DTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCD 129 (517)
Q Consensus 68 ~~~~~~yDp~t~~--w~~-l~~~~---------------~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~ 129 (517)
+..+..+|++|++ |+. +.... .....++.+.-.|.++++||..+ ..++.||.+++ ..-
T Consensus 640 ~G~l~AiDl~tGk~~W~~~~g~~~~~~p~~~~~~~~~~~g~p~~gG~l~TagglvF~~gt~d--~~l~A~D~~tG--k~l 715 (764)
T TIGR03074 640 WGYMAAIDLKTGKVVWQHPNGTVRDTGPMGIRMPLPIPIGVPTLGGPLATAGGLVFIGATQD--NYLRAYDLSTG--KEL 715 (764)
T ss_pred cEEEEEEECCCCcEeeeeECCccccccccccccccccccCCcccCCcEEEcCCEEEEEeCCC--CEEEEEECCCC--cee
Confidence 4678899999988 653 31100 12233454444555555555433 57999999854 567
Q ss_pred eEeccCccccCc-CccceeEEcCCCcEEEE
Q 044265 130 WVELDDVELVNG-RWYGTDQILPDGSVIIL 158 (517)
Q Consensus 130 W~~~~~~~m~~~-R~~~s~~~L~dG~v~vv 158 (517)
|+.. |+.. ...+..=...|||-||+
T Consensus 716 W~~~----l~~~~~a~P~tY~~~~GkQYVv 741 (764)
T TIGR03074 716 WKAR----LPAGGQATPMTYMGKDGKQYVV 741 (764)
T ss_pred eEee----CCCCcccCCEEEEecCCEEEEE
Confidence 9753 3322 22222222028998887
No 197
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=33.04 E-value=1e+02 Score=28.72 Aligned_cols=51 Identities=12% Similarity=0.084 Sum_probs=31.6
Q ss_pred eEEEEECCCCCeEEccccCCCcccceeecCCCcEEEecCCCC---CCCeEEEecCC
Q 044265 70 HSAILDLQTNQIRPLMILTDTWCSSGQILADGTVLQTGGDLD---GYKKIRKFSPC 122 (517)
Q Consensus 70 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~v~GG~~~---g~~~v~~ydp~ 122 (517)
..++||.. +...+.......|....-.+||+.+++..... -.+.+++|+-.
T Consensus 126 ~l~~wd~~--~~~~i~~~~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 126 DLEFWDVR--KKKKISTFEHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred EEEEEECC--CCEEeeccccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 57889987 44445444444455566788999988876431 12456666654
No 198
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=32.29 E-value=7.7e+02 Score=27.72 Aligned_cols=86 Identities=13% Similarity=0.015 Sum_probs=47.2
Q ss_pred eEEEEECCCCCeEEccc--cCCCcccc-eeec-CCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCcccc-CcCcc
Q 044265 70 HSAILDLQTNQIRPLMI--LTDTWCSS-GQIL-ADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELV-NGRWY 144 (517)
Q Consensus 70 ~~~~yDp~t~~w~~l~~--~~~~~c~~-~~~l-~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~-~~R~~ 144 (517)
.+.+|++..++|+.... .+..|-+. .... .++-.+++||.+ ..+-+|.+. +. .++. ..+..
T Consensus 36 t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D---~~i~v~~~~----~~-------~P~~~LkgH~ 101 (745)
T KOG0301|consen 36 TVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMD---TTIIVFKLS----QA-------EPLYTLKGHK 101 (745)
T ss_pred ceeeeeccCcccccceecccCcceeeccceeccccCcceEeeccc---ceEEEEecC----CC-------Cchhhhhccc
Confidence 37899999999987442 23333222 2222 355557788875 455577665 11 1121 22333
Q ss_pred ceeEEcC-CCcEEEEcCCCCCceEEe
Q 044265 145 GTDQILP-DGSVIILGGKGANTVEYY 169 (517)
Q Consensus 145 ~s~~~L~-dG~v~vvGG~~~~~~E~y 169 (517)
..+|.|. +.+--++.|+...++-+|
T Consensus 102 snVC~ls~~~~~~~iSgSWD~TakvW 127 (745)
T KOG0301|consen 102 SNVCSLSIGEDGTLISGSWDSTAKVW 127 (745)
T ss_pred cceeeeecCCcCceEecccccceEEe
Confidence 4455554 222226788877787777
No 199
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=31.24 E-value=2.2e+02 Score=22.46 Aligned_cols=72 Identities=25% Similarity=0.194 Sum_probs=39.2
Q ss_pred eecCCceeecCCeEEEEEEec--CC-ceeeEEEEEecCCcccccCcCCcceE-EeeecccccCCCCcEEEEEeCCCCCCc
Q 044265 416 IEEIPETVRYGEAFDVFVTVP--LP-VVGILEVNLGNAPFATHSFQQGQRLV-KITVTPSVPDANGRYRVGCTAPPNGAV 491 (517)
Q Consensus 416 i~~~p~~~~~g~~~~v~~~~~--~~-~~~~~~v~l~~~~~~TH~~~~~qR~~-~l~~~~~~~~~~~~~~~~v~~P~~~~~ 491 (517)
+...|..+..|+.++|++... +. ......|.+...+... +++.| .|. .+ ...+++++..+.
T Consensus 8 ~~~~~~~~~~g~~~~i~~~V~N~G~~~~~~~~v~~~~~~~~~-----~~~~i~~L~------~g-~~~~v~~~~~~~--- 72 (101)
T PF07705_consen 8 ITVSPSNVVPGEPVTITVTVKNNGTADAENVTVRLYLDGNSV-----STVTIPSLA------PG-ESETVTFTWTPP--- 72 (101)
T ss_dssp EEEC-SEEETTSEEEEEEEEEE-SSS-BEEEEEEEEETTEEE-----EEEEESEB-------TT-EEEEEEEEEE-S---
T ss_pred EeeCCCcccCCCEEEEEEEEEECCCCCCCCEEEEEEECCcee-----ccEEECCcC------CC-cEEEEEEEEEeC---
Confidence 455688899999887776542 21 2344677776655544 33344 222 12 235555554433
Q ss_pred CCCcceEEEEEc
Q 044265 492 APPGYYMAFVVN 503 (517)
Q Consensus 492 ~ppG~ymlf~~~ 503 (517)
.||.|-|.++.
T Consensus 73 -~~G~~~i~~~i 83 (101)
T PF07705_consen 73 -SPGSYTIRVVI 83 (101)
T ss_dssp -S-CEEEEEEEE
T ss_pred -CCCeEEEEEEE
Confidence 67988877763
No 200
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=30.33 E-value=1.2e+02 Score=23.35 Aligned_cols=69 Identities=20% Similarity=0.172 Sum_probs=30.4
Q ss_pred ecCCeEEEEEEec--CC-ceeeEEEEEecCCcccccCcCCcceEEeeecccccCCC-CcEEEEEeCCCCCCcCCCcceEE
Q 044265 424 RYGEAFDVFVTVP--LP-VVGILEVNLGNAPFATHSFQQGQRLVKITVTPSVPDAN-GRYRVGCTAPPNGAVAPPGYYMA 499 (517)
Q Consensus 424 ~~g~~~~v~~~~~--~~-~~~~~~v~l~~~~~~TH~~~~~qR~~~l~~~~~~~~~~-~~~~~~v~~P~~~~~~ppG~yml 499 (517)
..|++++++++.. +. ....++++|-.|.-++ .....++.-.|+- |. -..+++|++|.+ ++||-|.|
T Consensus 2 ~~G~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~-~~~~~~~~~~l~p------G~s~~~~~~V~vp~~---a~~G~y~v 71 (78)
T PF10633_consen 2 TPGETVTVTLTVTNTGTAPLTNVSLSLSLPEGWT-VSASPASVPSLPP------GESVTVTFTVTVPAD---AAPGTYTV 71 (78)
T ss_dssp -TTEEEEEEEEEE--SSS-BSS-EEEEE--TTSE----EEEEE--B-T------TSEEEEEEEEEE-TT-----SEEEEE
T ss_pred CCCCEEEEEEEEEECCCCceeeEEEEEeCCCCcc-ccCCccccccCCC------CCEEEEEEEEECCCC---CCCceEEE
Confidence 4577666555432 21 1234677777776665 2222333333321 22 135666777755 45899988
Q ss_pred EEE
Q 044265 500 FVV 502 (517)
Q Consensus 500 f~~ 502 (517)
-+.
T Consensus 72 ~~~ 74 (78)
T PF10633_consen 72 TVT 74 (78)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
No 201
>PRK04043 tolB translocation protein TolB; Provisional
Probab=29.78 E-value=6.8e+02 Score=26.36 Aligned_cols=81 Identities=10% Similarity=0.081 Sum_probs=48.1
Q ss_pred eEEEEECCCCCeEEccccCCCcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccCcCccceeEE
Q 044265 70 HSAILDLQTNQIRPLMILTDTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVNGRWYGTDQI 149 (517)
Q Consensus 70 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~~s~~~ 149 (517)
...++|+.+++-+.+..... ........+||+-+++.-..++...++++|.. +..++++ ..-.. .......
T Consensus 214 ~Iyv~dl~tg~~~~lt~~~g-~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~----~g~~~~L--T~~~~--~d~~p~~ 284 (419)
T PRK04043 214 TLYKYNLYTGKKEKIASSQG-MLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTN----TKTLTQI--TNYPG--IDVNGNF 284 (419)
T ss_pred EEEEEECCCCcEEEEecCCC-cEEeeEECCCCCEEEEEEccCCCcEEEEEECC----CCcEEEc--ccCCC--ccCccEE
Confidence 57889999998888764322 22234567899654443222345678889987 5667766 22221 1223356
Q ss_pred cCCCc-EEEEc
Q 044265 150 LPDGS-VIILG 159 (517)
Q Consensus 150 L~dG~-v~vvG 159 (517)
.+||+ |+.+.
T Consensus 285 SPDG~~I~F~S 295 (419)
T PRK04043 285 VEDDKRIVFVS 295 (419)
T ss_pred CCCCCEEEEEE
Confidence 67885 44443
No 202
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=29.73 E-value=3.9e+02 Score=27.57 Aligned_cols=84 Identities=15% Similarity=0.181 Sum_probs=48.1
Q ss_pred EEEEECCCCCeEEccccCCCcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccCcCccceeEEc
Q 044265 71 SAILDLQTNQIRPLMILTDTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVNGRWYGTDQIL 150 (517)
Q Consensus 71 ~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~~s~~~L 150 (517)
..+||..|+.-.-.-..++.|-.+.++-+.|+.++.=-. .+++++||..+ .+-.. .++..-..-+..-+
T Consensus 316 Ik~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaD---Dktlrvwdl~~----~~cmk----~~~ah~hfvt~lDf 384 (406)
T KOG0295|consen 316 IKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCAD---DKTLRVWDLKN----LQCMK----TLEAHEHFVTSLDF 384 (406)
T ss_pred EEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEec---CCcEEEEEecc----ceeee----ccCCCcceeEEEec
Confidence 556666666544333456677666667777776655332 27899999883 22211 12222223344455
Q ss_pred CCCcEEEEcCCCCCc
Q 044265 151 PDGSVIILGGKGANT 165 (517)
Q Consensus 151 ~dG~v~vvGG~~~~~ 165 (517)
+...-||+-|+-..+
T Consensus 385 h~~~p~VvTGsVdqt 399 (406)
T KOG0295|consen 385 HKTAPYVVTGSVDQT 399 (406)
T ss_pred CCCCceEEeccccce
Confidence 567778888765443
No 203
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=29.31 E-value=7.6e+02 Score=26.73 Aligned_cols=202 Identities=15% Similarity=0.145 Sum_probs=102.1
Q ss_pred eEEEEECCCCCeEEcccc-CCCcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccCcC-cccee
Q 044265 70 HSAILDLQTNQIRPLMIL-TDTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVNGR-WYGTD 147 (517)
Q Consensus 70 ~~~~yDp~t~~w~~l~~~-~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R-~~~s~ 147 (517)
.+++||.++.+=.+-... +..++ ++...++.++..|... ..+-.+|.... ..-. ..|...| --.+.
T Consensus 240 ~v~iwD~~~~k~~~~~~~~h~~rv--g~laW~~~~lssGsr~---~~I~~~dvR~~---~~~~----~~~~~H~qeVCgL 307 (484)
T KOG0305|consen 240 TVQIWDVKEQKKTRTLRGSHASRV--GSLAWNSSVLSSGSRD---GKILNHDVRIS---QHVV----STLQGHRQEVCGL 307 (484)
T ss_pred eEEEEehhhccccccccCCcCcee--EEEeccCceEEEecCC---CcEEEEEEecc---hhhh----hhhhcccceeeee
Confidence 578899876554433323 44444 3445678888888764 46677776511 1100 1133222 23344
Q ss_pred EEcCCCcEEEEcCCCCCceEEeCC-CCCceeccchhhccccccCCCCceEEEcc-CCcEEEEECC----ceEEEeCCCCe
Q 044265 148 QILPDGSVIILGGKGANTVEYYPP-RNGAVSFPFLADVEDKQMDNLYPYVHLLP-NGHLFIFAND----KAVMYDYETNK 221 (517)
Q Consensus 148 ~~L~dG~v~vvGG~~~~~~E~yP~-~~~w~~~~~l~~t~~~~~~~~yp~~~~~~-~G~iyv~Gg~----~~~~ydp~t~~ 221 (517)
..-+|++.++.||.++ .+-+|.. ...+. ..+...+ .... .+..+| ...|++.||. ....||..+++
T Consensus 308 kws~d~~~lASGgnDN-~~~Iwd~~~~~p~-~~~~~H~-----aAVK-A~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~ 379 (484)
T KOG0305|consen 308 KWSPDGNQLASGGNDN-VVFIWDGLSPEPK-FTFTEHT-----AAVK-ALAWCPWQSGLLATGGGSADRCIKFWNTNTGA 379 (484)
T ss_pred EECCCCCeeccCCCcc-ceEeccCCCcccc-EEEeccc-----eeee-EeeeCCCccCceEEcCCCcccEEEEEEcCCCc
Confidence 4556899988888664 4556622 11111 0000000 0111 122333 5678888874 46788888776
Q ss_pred EEEecCCCCCCCCCCCCCCceeeeecccCccccEEEEEcCCcCCcccccCCCCCCCCceeEEEecCCCCCceec-CC--C
Q 044265 222 IAREYPPLDGGPRNYPSAGSSAMLALEGDFATAVIVVCGGAQFGAFIQRSTDTPAHGSCGRIIATSADPTWEME-DM--P 298 (517)
Q Consensus 222 w~~~~p~~p~~~r~~~~~g~~v~l~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W~~~-~m--~ 298 (517)
-...+ - ...+- .+-+-.+ ...+|+..-|.... .+..++. ++-... .| .
T Consensus 380 ~i~~v---d--tgsQV--csL~Wsk-----~~kEi~sthG~s~n-------------~i~lw~~----ps~~~~~~l~gH 430 (484)
T KOG0305|consen 380 RIDSV---D--TGSQV--CSLIWSK-----KYKELLSTHGYSEN-------------QITLWKY----PSMKLVAELLGH 430 (484)
T ss_pred Eeccc---c--cCCce--eeEEEcC-----CCCEEEEecCCCCC-------------cEEEEec----cccceeeeecCC
Confidence 44211 1 01110 1111111 13567777776522 2223321 111111 22 4
Q ss_pred cceeeeeeEEecCCcEEEEcCcc
Q 044265 299 FGRIMGDMVMLPTGDVLIINGAQ 321 (517)
Q Consensus 299 ~~R~~~~~v~lpdG~v~v~GG~~ 321 (517)
..|+.+- +.-|||+-+++|+.+
T Consensus 431 ~~RVl~l-a~SPdg~~i~t~a~D 452 (484)
T KOG0305|consen 431 TSRVLYL-ALSPDGETIVTGAAD 452 (484)
T ss_pred cceeEEE-EECCCCCEEEEeccc
Confidence 5688877 566999999998876
No 204
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=28.93 E-value=5e+02 Score=28.19 Aligned_cols=107 Identities=20% Similarity=0.229 Sum_probs=0.0
Q ss_pred cceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccCcCccceeEEcCCCcEEEEcCCCCCceEEe---
Q 044265 93 SSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVNGRWYGTDQILPDGSVIILGGKGANTVEYY--- 169 (517)
Q Consensus 93 ~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~~s~~~L~dG~v~vvGG~~~~~~E~y--- 169 (517)
.+.++-+++.-+++||.+ .++++|... ...-.+. ..+...|.-.+....+..--|++-|--...+-.|
T Consensus 447 s~vAv~~~~~~vaVGG~D---gkvhvysl~----g~~l~ee--~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~ 517 (603)
T KOG0318|consen 447 SAVAVSPDGSEVAVGGQD---GKVHVYSLS----GDELKEE--AKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVA 517 (603)
T ss_pred ceEEEcCCCCEEEEeccc---ceEEEEEec----CCcccce--eeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcc
Q ss_pred ---CCCCCceeccchhhccccccCCCCceEEEccCCcEEEEEC--CceEEEeCCC
Q 044265 170 ---PPRNGAVSFPFLADVEDKQMDNLYPYVHLLPNGHLFIFAN--DKAVMYDYET 219 (517)
Q Consensus 170 ---P~~~~w~~~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~Gg--~~~~~ydp~t 219 (517)
+.++.|..-...... ++-.||.++++.|. ..+.+|+.+.
T Consensus 518 s~~~~~~~w~FHtakI~~-----------~aWsP~n~~vATGSlDt~Viiysv~k 561 (603)
T KOG0318|consen 518 SREVKTNRWAFHTAKINC-----------VAWSPNNKLVATGSLDTNVIIYSVKK 561 (603)
T ss_pred cCceecceeeeeeeeEEE-----------EEeCCCceEEEeccccceEEEEEccC
No 205
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=28.67 E-value=6.2e+02 Score=25.54 Aligned_cols=48 Identities=17% Similarity=0.207 Sum_probs=32.6
Q ss_pred ceEEEEECCCCCeEEcccc--CCCcccceeecCC--CcEEEecCCCCCCCeEEEecCC
Q 044265 69 AHSAILDLQTNQIRPLMIL--TDTWCSSGQILAD--GTVLQTGGDLDGYKKIRKFSPC 122 (517)
Q Consensus 69 ~~~~~yDp~t~~w~~l~~~--~~~~c~~~~~l~d--G~l~v~GG~~~g~~~v~~ydp~ 122 (517)
..+.+||+.+++-..+..- +-.-|+ .+.. -.++++|-++ ++++.||+.
T Consensus 94 k~~k~wDL~S~Q~~~v~~Hd~pvkt~~---wv~~~~~~cl~TGSWD---KTlKfWD~R 145 (347)
T KOG0647|consen 94 KQAKLWDLASGQVSQVAAHDAPVKTCH---WVPGMNYQCLVTGSWD---KTLKFWDTR 145 (347)
T ss_pred CceEEEEccCCCeeeeeecccceeEEE---EecCCCcceeEecccc---cceeecccC
Confidence 4688999999988876532 112222 1222 3478888875 889999987
No 206
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=27.85 E-value=3.8e+02 Score=28.90 Aligned_cols=57 Identities=16% Similarity=-0.019 Sum_probs=31.4
Q ss_pred EEEEECCCCC--eEEccccC--CCc---ccceeecCC-CcEEEecCCCCCCCeEEEecCCCCCCCCceEec
Q 044265 71 SAILDLQTNQ--IRPLMILT--DTW---CSSGQILAD-GTVLQTGGDLDGYKKIRKFSPCEANGLCDWVEL 133 (517)
Q Consensus 71 ~~~yDp~t~~--w~~l~~~~--~~~---c~~~~~l~d-G~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~ 133 (517)
...+|.+|++ |+.-.... ... ...++.+.+ ++||+... ...+..+|..++ +..|+..
T Consensus 73 l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~----~g~v~AlD~~TG--~~~W~~~ 137 (488)
T cd00216 73 LFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF----DGRLVALDAETG--KQVWKFG 137 (488)
T ss_pred EEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC----CCeEEEEECCCC--CEeeeec
Confidence 5667887765 66432211 011 122234445 77776433 247888998854 5678754
No 207
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=27.41 E-value=2.5e+02 Score=29.13 Aligned_cols=83 Identities=17% Similarity=0.185 Sum_probs=45.1
Q ss_pred eEEEEECCCCCeEEcc---ccCCCcccceeecC-CCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccCc-Ccc
Q 044265 70 HSAILDLQTNQIRPLM---ILTDTWCSSGQILA-DGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVNG-RWY 144 (517)
Q Consensus 70 ~~~~yDp~t~~w~~l~---~~~~~~c~~~~~l~-dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~-R~~ 144 (517)
+..+|||.++.=.-.. ..|..|-.+...-+ +-.+++.|-++ +.+.+||.. ..|..+ -++... ---
T Consensus 323 ~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D---~t~klWDvR-----S~k~pl--ydI~~h~DKv 392 (423)
T KOG0313|consen 323 HIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYD---NTVKLWDVR-----STKAPL--YDIAGHNDKV 392 (423)
T ss_pred ceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecC---CeEEEEEec-----cCCCcc--eeeccCCceE
Confidence 6789999987532211 34555655444434 45677777664 678889986 344333 122211 112
Q ss_pred ceeEEcCCCcEEEEcCCCC
Q 044265 145 GTDQILPDGSVIILGGKGA 163 (517)
Q Consensus 145 ~s~~~L~dG~v~vvGG~~~ 163 (517)
.+ +--.++..+|.||.+.
T Consensus 393 l~-vdW~~~~~IvSGGaD~ 410 (423)
T KOG0313|consen 393 LS-VDWNEGGLIVSGGADN 410 (423)
T ss_pred EE-EeccCCceEEeccCcc
Confidence 22 3333666667777653
No 208
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=26.91 E-value=6.4e+02 Score=25.09 Aligned_cols=107 Identities=15% Similarity=0.179 Sum_probs=67.1
Q ss_pred CcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccc--cCcCccceeEEcCCCcEEEEcCCCCCceEEe-CCCCCcee
Q 044265 101 GTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVEL--VNGRWYGTDQILPDGSVIILGGKGANTVEYY-PPRNGAVS 177 (517)
Q Consensus 101 G~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m--~~~R~~~s~~~L~dG~v~vvGG~~~~~~E~y-P~~~~w~~ 177 (517)
|+|+..+|.+ +.+++|+... .++|+-. .-+ ...|.--+++.-|.|+.++.+-++ .++-+| -....|..
T Consensus 27 g~ilAscg~D---k~vriw~~~~---~~s~~ck--~vld~~hkrsVRsvAwsp~g~~La~aSFD-~t~~Iw~k~~~efec 97 (312)
T KOG0645|consen 27 GVILASCGTD---KAVRIWSTSS---GDSWTCK--TVLDDGHKRSVRSVAWSPHGRYLASASFD-ATVVIWKKEDGEFEC 97 (312)
T ss_pred ceEEEeecCC---ceEEEEecCC---CCcEEEE--EeccccchheeeeeeecCCCcEEEEeecc-ceEEEeecCCCceeE
Confidence 7899999864 8999999762 4678765 223 345666678888899977666554 456677 33444543
Q ss_pred ccchhhccccccCCCCceEEEccCCcEEEEEC--CceEEEeCCCCe
Q 044265 178 FPFLADVEDKQMDNLYPYVHLLPNGHLFIFAN--DKAVMYDYETNK 221 (517)
Q Consensus 178 ~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~Gg--~~~~~ydp~t~~ 221 (517)
..-|.. ++. ---.++...+|..++... ++++++....+.
T Consensus 98 v~~lEG----HEn-EVK~Vaws~sG~~LATCSRDKSVWiWe~dedd 138 (312)
T KOG0645|consen 98 VATLEG----HEN-EVKCVAWSASGNYLATCSRDKSVWIWEIDEDD 138 (312)
T ss_pred Eeeeec----ccc-ceeEEEEcCCCCEEEEeeCCCeEEEEEecCCC
Confidence 333321 111 111244556888888876 478887766443
No 209
>PF10670 DUF4198: Domain of unknown function (DUF4198)
Probab=26.72 E-value=2.8e+02 Score=25.71 Aligned_cols=68 Identities=21% Similarity=0.189 Sum_probs=40.7
Q ss_pred CceeecCCeEEEEEEecCCceeeEEEEEecCCcccccCcCCcceEEeeecccccCCCCcEEEEEeCCCCCCcCCCcceEE
Q 044265 420 PETVRYGEAFDVFVTVPLPVVGILEVNLGNAPFATHSFQQGQRLVKITVTPSVPDANGRYRVGCTAPPNGAVAPPGYYMA 499 (517)
Q Consensus 420 p~~~~~g~~~~v~~~~~~~~~~~~~v~l~~~~~~TH~~~~~qR~~~l~~~~~~~~~~~~~~~~v~~P~~~~~~ppG~yml 499 (517)
|..+..|+.|++++-..+.-....+|.+...+........ ...++ +. ..| .+++++| -||.|||
T Consensus 144 P~~l~~g~~~~~~vl~~GkPl~~a~V~~~~~~~~~~~~~~-----~~~~~--TD-~~G--~~~~~~~------~~G~wli 207 (215)
T PF10670_consen 144 PYKLKAGDPLPFQVLFDGKPLAGAEVEAFSPGGWYDVEHE-----AKTLK--TD-ANG--RATFTLP------RPGLWLI 207 (215)
T ss_pred cccccCCCEEEEEEEECCeEcccEEEEEEECCCccccccc-----eEEEE--EC-CCC--EEEEecC------CCEEEEE
Confidence 5567889988887765442233477888887766533322 22222 11 122 5666555 3799999
Q ss_pred EEEc
Q 044265 500 FVVN 503 (517)
Q Consensus 500 f~~~ 503 (517)
-+..
T Consensus 208 ~a~~ 211 (215)
T PF10670_consen 208 RASH 211 (215)
T ss_pred EEEE
Confidence 8864
No 210
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=26.40 E-value=6.2e+02 Score=24.73 Aligned_cols=136 Identities=10% Similarity=0.081 Sum_probs=69.6
Q ss_pred eEEEEECCCCCeEEccccCCCcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccCcCccceeEE
Q 044265 70 HSAILDLQTNQIRPLMILTDTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVNGRWYGTDQI 149 (517)
Q Consensus 70 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~~s~~~ 149 (517)
.+.+|+|..+.....-..|-.----.+...|..-+..||- .+.+.+||..++..-.+|... .+..+ ++..
T Consensus 40 tvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~Gg---Dk~v~vwDV~TGkv~Rr~rgH-~aqVN------tV~f 109 (307)
T KOG0316|consen 40 TVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGG---DKAVQVWDVNTGKVDRRFRGH-LAQVN------TVRF 109 (307)
T ss_pred eEEeecccccceeeeecCCCceeeeccccccccccccCCC---CceEEEEEcccCeeeeecccc-cceee------EEEe
Confidence 5788999887765433332221112233446666666663 388999999843222334322 11222 2223
Q ss_pred cCCCcEEEEcCCCCCceEEe-CCCCCceeccchhhccccccCCCCceEEEccCCcEEEEEC--CceEEEeCCCCeEE
Q 044265 150 LPDGSVIILGGKGANTVEYY-PPRNGAVSFPFLADVEDKQMDNLYPYVHLLPNGHLFIFAN--DKAVMYDYETNKIA 223 (517)
Q Consensus 150 L~dG~v~vvGG~~~~~~E~y-P~~~~w~~~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~Gg--~~~~~ydp~t~~w~ 223 (517)
-.+..|++.|+.+ .++.+| -......+...+.+.+|. -..+-..++..+.|. ..+..||.+.++-.
T Consensus 110 NeesSVv~SgsfD-~s~r~wDCRS~s~ePiQildea~D~-------V~Si~v~~heIvaGS~DGtvRtydiR~G~l~ 178 (307)
T KOG0316|consen 110 NEESSVVASGSFD-SSVRLWDCRSRSFEPIQILDEAKDG-------VSSIDVAEHEIVAGSVDGTVRTYDIRKGTLS 178 (307)
T ss_pred cCcceEEEecccc-ceeEEEEcccCCCCccchhhhhcCc-------eeEEEecccEEEeeccCCcEEEEEeecceee
Confidence 3244565556554 567777 333333333333333331 133334555555554 45789999887643
No 211
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.99 E-value=3.4e+02 Score=27.28 Aligned_cols=90 Identities=22% Similarity=0.363 Sum_probs=48.8
Q ss_pred Cccee-eeeeEEecCCcEEEEcCccCCCCCcccCCCCccccEEEeCCCCCCceeccCCCCCccccccceeeecCCCcEEE
Q 044265 298 PFGRI-MGDMVMLPTGDVLIINGAQAGTQGFEMASNPCLFPVLYRPTQPAGLRFMTLNPGTIPRMYHSTANLLPDGRVLI 376 (517)
Q Consensus 298 ~~~R~-~~~~v~lpdG~v~v~GG~~~g~~g~~~~~~~~~~~e~YdP~t~~g~~W~~~~~~~~~R~yhs~a~ll~dG~V~v 376 (517)
...|. +.-.+.-+||+++-.--.+ + +.+.. -+-+||-. . .++.+..-+.--+..--.+|++|||.+|
T Consensus 110 ~~~RHfyGHGvfs~dG~~LYATEnd-----f-d~~rG--ViGvYd~r-~---~fqrvgE~~t~GiGpHev~lm~DGrtlv 177 (366)
T COG3490 110 QEGRHFYGHGVFSPDGRLLYATEND-----F-DPNRG--VIGVYDAR-E---GFQRVGEFSTHGIGPHEVTLMADGRTLV 177 (366)
T ss_pred ccCceeecccccCCCCcEEEeecCC-----C-CCCCc--eEEEEecc-c---ccceecccccCCcCcceeEEecCCcEEE
Confidence 34453 2233777999876542111 1 01111 35789987 4 6776665544333222467899999877
Q ss_pred ecCC---CccccccCCCCCCceeeEEEeCCc
Q 044265 377 AGSN---PHYFYKFNAEFPTELRIEAFSPEY 404 (517)
Q Consensus 377 ~GG~---~~~~~~~~~~~~~~~~vE~y~P~y 404 (517)
+-+. .+..+ |. +++++|..-|.+
T Consensus 178 vanGGIethpdf---gR--~~lNldsMePSl 203 (366)
T COG3490 178 VANGGIETHPDF---GR--TELNLDSMEPSL 203 (366)
T ss_pred EeCCceeccccc---Cc--cccchhhcCccE
Confidence 6543 22111 11 356677777777
No 212
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=25.86 E-value=7e+02 Score=25.20 Aligned_cols=130 Identities=18% Similarity=0.221 Sum_probs=64.7
Q ss_pred eEEEEECCC-CCeEEccc-cCC--CcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEec--cCccccCcCc
Q 044265 70 HSAILDLQT-NQIRPLMI-LTD--TWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVEL--DDVELVNGRW 143 (517)
Q Consensus 70 ~~~~yDp~t-~~w~~l~~-~~~--~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~--~~~~m~~~R~ 143 (517)
.+.+|+.+. ++..+... .++ .+| ....-||..+.+||.+ +.+.+||.. +++-..+ ..++...-||
T Consensus 51 tVR~wevq~~g~~~~ka~~~~~~PvL~--v~WsddgskVf~g~~D---k~~k~wDL~----S~Q~~~v~~Hd~pvkt~~w 121 (347)
T KOG0647|consen 51 TVRIWEVQNSGQLVPKAQQSHDGPVLD--VCWSDDGSKVFSGGCD---KQAKLWDLA----SGQVSQVAAHDAPVKTCHW 121 (347)
T ss_pred ceEEEEEecCCcccchhhhccCCCeEE--EEEccCCceEEeeccC---CceEEEEcc----CCCeeeeeecccceeEEEE
Confidence 477888765 34444221 111 122 2334588888888875 788999998 5655544 0112222233
Q ss_pred cceeEEcCCCcEEEEcCCCCCceEEe-CCCCCceeccchhhccccccCCCCceEEEccCCcEEEEECCceEEEeCCCCe
Q 044265 144 YGTDQILPDGSVIILGGKGANTVEYY-PPRNGAVSFPFLADVEDKQMDNLYPYVHLLPNGHLFIFANDKAVMYDYETNK 221 (517)
Q Consensus 144 ~~s~~~L~dG~v~vvGG~~~~~~E~y-P~~~~w~~~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~Gg~~~~~ydp~t~~ 221 (517)
-... +.-.++=|+..+++.+| ++...-...-.|+++.+. ....||.++ ...+++++.+|+.+...
T Consensus 122 v~~~-----~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa-~Dv~~pm~v-------Vata~r~i~vynL~n~~ 187 (347)
T KOG0647|consen 122 VPGM-----NYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYA-ADVLYPMAV-------VATAERHIAVYNLENPP 187 (347)
T ss_pred ecCC-----CcceeEecccccceeecccCCCCeeeeeeccceeee-hhccCceeE-------EEecCCcEEEEEcCCCc
Confidence 2221 12234455666788888 654332211112222111 112333222 23456777889887654
No 213
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=25.74 E-value=7.4e+02 Score=25.43 Aligned_cols=147 Identities=17% Similarity=0.235 Sum_probs=79.8
Q ss_pred ccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCcccc---CcCccceeEEcCCCcE-EEEcCCCCCceE
Q 044265 92 CSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELV---NGRWYGTDQILPDGSV-IILGGKGANTVE 167 (517)
Q Consensus 92 c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~---~~R~~~s~~~L~dG~v-~vvGG~~~~~~E 167 (517)
|+.+.+.++|+.+++= +-|...+.+|+.. ...-+...+..++ -+|. .+.-++||+ |++.=.+ .+++
T Consensus 147 ~H~a~~tP~~~~l~v~--DLG~Dri~~y~~~----dg~L~~~~~~~v~~G~GPRH---i~FHpn~k~aY~v~EL~-stV~ 216 (346)
T COG2706 147 VHSANFTPDGRYLVVP--DLGTDRIFLYDLD----DGKLTPADPAEVKPGAGPRH---IVFHPNGKYAYLVNELN-STVD 216 (346)
T ss_pred cceeeeCCCCCEEEEe--ecCCceEEEEEcc----cCccccccccccCCCCCcce---EEEcCCCcEEEEEeccC-CEEE
Confidence 7778888999877762 2367889999987 2333332112232 2352 566778887 5554332 4566
Q ss_pred Ee---CCCCCce---eccchhhccccccCCCCceEEEccCCcEEEEECC---ceEEE--eCCCCeEEEecCCCC--CC-C
Q 044265 168 YY---PPRNGAV---SFPFLADVEDKQMDNLYPYVHLLPNGHLFIFAND---KAVMY--DYETNKIAREYPPLD--GG-P 233 (517)
Q Consensus 168 ~y---P~~~~w~---~~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~Gg~---~~~~y--dp~t~~w~~~~p~~p--~~-~ 233 (517)
+| +...+.. ....|++. ....++-...++.+||+.+.+.++ +..+| |+.+++-.. +...+ +. +
T Consensus 217 v~~y~~~~g~~~~lQ~i~tlP~d--F~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~-~~~~~teg~~P 293 (346)
T COG2706 217 VLEYNPAVGKFEELQTIDTLPED--FTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLEL-VGITPTEGQFP 293 (346)
T ss_pred EEEEcCCCceEEEeeeeccCccc--cCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEE-EEEeccCCcCC
Confidence 65 4333322 22333321 122344455678899997777764 44444 566664331 11111 11 3
Q ss_pred CCCCCCCceeeeecccCccccEEEEEcCCc
Q 044265 234 RNYPSAGSSAMLALEGDFATAVIVVCGGAQ 263 (517)
Q Consensus 234 r~~~~~g~~v~l~~~~~~~~gkI~v~GG~~ 263 (517)
|.+- +- ..++++++-+.+
T Consensus 294 R~F~------i~------~~g~~Liaa~q~ 311 (346)
T COG2706 294 RDFN------IN------PSGRFLIAANQK 311 (346)
T ss_pred ccce------eC------CCCCEEEEEccC
Confidence 4331 21 278888888876
No 214
>TIGR03437 Soli_cterm Solibacter uncharacterized C-terminal domain. This model describes a protein domain found in 90 proteins of Solibacter usitatus Ellin6076, nearly always as the C-terminal domain of a much larger protein. No homologs to this domain are detected outside of S. usitatus, a member of the Acidobacteria.
Probab=24.98 E-value=1.4e+02 Score=28.52 Aligned_cols=37 Identities=24% Similarity=0.345 Sum_probs=30.1
Q ss_pred CcEEEEEeCCCCCCcCCCcceEEEEEcCCcCcccEEEEee
Q 044265 477 GRYRVGCTAPPNGAVAPPGYYMAFVVNQGVPSVARWVHLI 516 (517)
Q Consensus 477 ~~~~~~v~~P~~~~~~ppG~ymlf~~~~gvPS~a~~v~i~ 516 (517)
|-+++++++|.+ + ++|.+=|.+..+|+.|.+..|.|+
T Consensus 179 Gl~QvNv~vP~~--~-~~G~~~v~itvgg~~S~~~~i~v~ 215 (215)
T TIGR03437 179 GLYQVNVRVPAG--L-ATGAVPVVITVGGVTSNAVTIAVQ 215 (215)
T ss_pred ceEEEEEEcCCC--C-CCCcEeEEEEECCccCCcEEEEeC
Confidence 358999999955 3 679888888889999999887764
No 215
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=24.81 E-value=8.6e+02 Score=25.84 Aligned_cols=251 Identities=12% Similarity=0.090 Sum_probs=115.4
Q ss_pred eEEEEECCCCCeEEccccCCCcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccCcCccceeEE
Q 044265 70 HSAILDLQTNQIRPLMILTDTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVNGRWYGTDQI 149 (517)
Q Consensus 70 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~~s~~~ 149 (517)
.+.+||-.+++...+-..+..-|.......+-...+.+-.+ ..+++|..-. .+ ...-...-..+--+-+ .
T Consensus 242 ~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad---~~i~vws~~~----~s-~~~~~~~h~~~V~~ls--~ 311 (506)
T KOG0289|consen 242 TAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASAD---EIIRVWSVPL----SS-EPTSSRPHEEPVTGLS--L 311 (506)
T ss_pred ceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCc---ceEEeecccc----cc-Cccccccccccceeee--e
Confidence 57789988888777666777666666666665555554322 4566665431 11 0000000001111111 1
Q ss_pred cCCCcEEEEcCCCCCceEEeCC-CCCce-eccchhhccccccCCCCceEEEccCCcEEEEECC--ceEEEeCCCCeEEEe
Q 044265 150 LPDGSVIILGGKGANTVEYYPP-RNGAV-SFPFLADVEDKQMDNLYPYVHLLPNGHLFIFAND--KAVMYDYETNKIARE 225 (517)
Q Consensus 150 L~dG~v~vvGG~~~~~~E~yP~-~~~w~-~~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~Gg~--~~~~ydp~t~~w~~~ 225 (517)
-+.|.-|+.. .+...+-++.. +..-. .... ++. .--|..+.+=|||.||..|-. .+.+||.+...-.
T Consensus 312 h~tgeYllsA-s~d~~w~Fsd~~~g~~lt~vs~--~~s----~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~-- 382 (506)
T KOG0289|consen 312 HPTGEYLLSA-SNDGTWAFSDISSGSQLTVVSD--ETS----DVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNV-- 382 (506)
T ss_pred ccCCcEEEEe-cCCceEEEEEccCCcEEEEEee--ccc----cceeEEeeEcCCceEEeccCCCceEEEEEcCCcccc--
Confidence 1233333321 22122222211 11111 0000 011 122545666689999999864 4678999876532
Q ss_pred cCCCCCCCCCCCCCCceeeeecccCccccEEEEEcCCcCCcccccCCCCCCCCceeEEEecCCCCCceecCCCcceeeee
Q 044265 226 YPPLDGGPRNYPSAGSSAMLALEGDFATAVIVVCGGAQFGAFIQRSTDTPAHGSCGRIIATSADPTWEMEDMPFGRIMGD 305 (517)
Q Consensus 226 ~p~~p~~~r~~~~~g~~v~l~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W~~~~m~~~R~~~~ 305 (517)
...|+. ..+ -.++-+. .+|-.++++-.+ + ++.++|+..-. ......++... ...
T Consensus 383 -a~Fpgh--t~~--vk~i~Fs-----ENGY~Lat~add-~-------------~V~lwDLRKl~-n~kt~~l~~~~-~v~ 436 (506)
T KOG0289|consen 383 -AKFPGH--TGP--VKAISFS-----ENGYWLATAADD-G-------------SVKLWDLRKLK-NFKTIQLDEKK-EVN 436 (506)
T ss_pred -ccCCCC--CCc--eeEEEec-----cCceEEEEEecC-C-------------eEEEEEehhhc-ccceeeccccc-cce
Confidence 223321 111 0122222 256666655332 1 24456665311 11111232221 112
Q ss_pred eEEe-cCCcEEEEcCccCCCCCcccCCCCccccEEEeCCCCCCceeccCCCCCccccccceeeecCCCcEEEecCCC
Q 044265 306 MVML-PTGDVLIINGAQAGTQGFEMASNPCLFPVLYRPTQPAGLRFMTLNPGTIPRMYHSTANLLPDGRVLIAGSNP 381 (517)
Q Consensus 306 ~v~l-pdG~v~v~GG~~~g~~g~~~~~~~~~~~e~YdP~t~~g~~W~~~~~~~~~R~yhs~a~ll~dG~V~v~GG~~ 381 (517)
++.+ .-|+.++++|.+ ..+.+|+-.+. +|+.+...+..-.-.-.+-+-.+.+++..||.+
T Consensus 437 s~~fD~SGt~L~~~g~~-------------l~Vy~~~k~~k---~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd 497 (506)
T KOG0289|consen 437 SLSFDQSGTYLGIAGSD-------------LQVYICKKKTK---SWTEIKELADHSGLSTGVRFGEHAQYLASTSMD 497 (506)
T ss_pred eEEEcCCCCeEEeecce-------------eEEEEEecccc---cceeeehhhhcccccceeeecccceEEeeccch
Confidence 2222 358889888654 35788999898 999876554332111112222344556666643
No 216
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=24.38 E-value=2.3e+02 Score=31.44 Aligned_cols=88 Identities=14% Similarity=0.135 Sum_probs=52.4
Q ss_pred CCcceEEEEECCCCCeEEccccCC--CcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccCcCc
Q 044265 66 DCYAHSAILDLQTNQIRPLMILTD--TWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVNGRW 143 (517)
Q Consensus 66 d~~~~~~~yDp~t~~w~~l~~~~~--~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~ 143 (517)
|....+.+||+..++..+--..++ .+| -++..++.-++.+|.+ ..+-.|...++ ...|... ......++.
T Consensus 222 DS~G~V~FWd~~~gTLiqS~~~h~adVl~--Lav~~~~d~vfsaGvd---~~ii~~~~~~~--~~~wv~~-~~r~~h~hd 293 (691)
T KOG2048|consen 222 DSAGTVTFWDSIFGTLIQSHSCHDADVLA--LAVADNEDRVFSAGVD---PKIIQYSLTTN--KSEWVIN-SRRDLHAHD 293 (691)
T ss_pred cCCceEEEEcccCcchhhhhhhhhcceeE--EEEcCCCCeEEEccCC---CceEEEEecCC--ccceeee-ccccCCccc
Confidence 445578889998877654333333 333 3445566777777765 33444444422 4569876 223445566
Q ss_pred cceeEEcCCCcEEEEcCCCC
Q 044265 144 YGTDQILPDGSVIILGGKGA 163 (517)
Q Consensus 144 ~~s~~~L~dG~v~vvGG~~~ 163 (517)
--++++..+ +++.||++.
T Consensus 294 vrs~av~~~--~l~sgG~d~ 311 (691)
T KOG2048|consen 294 VRSMAVIEN--ALISGGRDF 311 (691)
T ss_pred ceeeeeecc--eEEecceee
Confidence 667788843 888899763
No 217
>PF03443 Glyco_hydro_61: Glycosyl hydrolase family 61; InterPro: IPR005103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The only known activity within this family is that of endoglucanase (3.2.1.4 from EC) GH61 from CAZY ; PDB: 4EIS_B 2VTC_A 4EIR_B 3EJA_D 3EII_A.
Probab=24.04 E-value=4.8e+02 Score=24.86 Aligned_cols=77 Identities=19% Similarity=0.098 Sum_probs=38.1
Q ss_pred eeecCCeEEEEEEec---CCceeeEEEEEecC-CcccccCcCCcceEEeeecccccCC-----------CCcEEEEEeCC
Q 044265 422 TVRYGEAFDVFVTVP---LPVVGILEVNLGNA-PFATHSFQQGQRLVKITVTPSVPDA-----------NGRYRVGCTAP 486 (517)
Q Consensus 422 ~~~~g~~~~v~~~~~---~~~~~~~~v~l~~~-~~~TH~~~~~qR~~~l~~~~~~~~~-----------~~~~~~~v~~P 486 (517)
.++.|+++++..... ..-.+-+.+=|-+- +...-.-..+++-.++.=......+ .+....++++|
T Consensus 64 ~V~AG~~I~f~w~~~~~~~~H~GP~~~Yma~~~~~~~~~d~~~~~WFKI~e~g~~~~~~~~~W~~~~l~~~~~~~~~~IP 143 (218)
T PF03443_consen 64 TVAAGDTITFEWHHGGWPHSHPGPVLVYMAKCPGDCATWDGSGLDWFKIYEDGLDDGGGKPGWATDKLIANNGSWTFTIP 143 (218)
T ss_dssp EEETTSEEEEEEESST-ETTSSS-EEEEEEE-TSTTTT--CCCCEEEEEEEE-BCTTSSE-BBCCHHHHTTTCEEEEE--
T ss_pred EeCCCCEEEEEEEecccCcCCCcceEEEeecCCcccccccCCCCeEEEEeeecccCCCCccceecchhhccCCceEEEeC
Confidence 578899888877621 11234455555543 3333333345555555322211111 11257888889
Q ss_pred CCCCcCCCcceEEEE
Q 044265 487 PNGAVAPPGYYMAFV 501 (517)
Q Consensus 487 ~~~~~~ppG~ymlf~ 501 (517)
++ +|||.|+|-.
T Consensus 144 ~~---l~~G~YLlR~ 155 (218)
T PF03443_consen 144 KN---LPPGQYLLRH 155 (218)
T ss_dssp TT---BBSEEEEEEE
T ss_pred CC---CCCCCceEEe
Confidence 43 6789999854
No 218
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=22.77 E-value=9e+02 Score=25.38 Aligned_cols=53 Identities=15% Similarity=0.204 Sum_probs=35.7
Q ss_pred eEEEEECCCCCeEEccccCCCc-ccceeecCCCcEEEecCCCCCCCeEEEecCC
Q 044265 70 HSAILDLQTNQIRPLMILTDTW-CSSGQILADGTVLQTGGDLDGYKKIRKFSPC 122 (517)
Q Consensus 70 ~~~~yDp~t~~w~~l~~~~~~~-c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~ 122 (517)
.+.+|||.+++...-...|... -.-..+|.+|.|+.+|=..-..+.+-++||.
T Consensus 196 kvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~ 249 (472)
T KOG0303|consen 196 KVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPN 249 (472)
T ss_pred eeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcc
Confidence 5788999999876655444332 2335678999977776433234677788886
No 219
>KOG4328 consensus WD40 protein [Function unknown]
Probab=21.81 E-value=9.9e+02 Score=25.50 Aligned_cols=22 Identities=14% Similarity=0.312 Sum_probs=17.6
Q ss_pred cCCcEEEEEC--CceEEEeCCCCe
Q 044265 200 PNGHLFIFAN--DKAVMYDYETNK 221 (517)
Q Consensus 200 ~~G~iyv~Gg--~~~~~ydp~t~~ 221 (517)
||-.++++|. +.+++||...++
T Consensus 430 P~~~li~vg~~~r~IDv~~~~~~q 453 (498)
T KOG4328|consen 430 PDYNLIVVGRYPRPIDVFDGNGGQ 453 (498)
T ss_pred CCccEEEEeccCcceeEEcCCCCE
Confidence 4778888887 568899998877
No 220
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=21.57 E-value=6.6e+02 Score=25.02 Aligned_cols=89 Identities=11% Similarity=0.193 Sum_probs=48.6
Q ss_pred eEEEEECCCCC-eEEccccCCCcccceeecCCCcEEEecCCCCCCCeEE--EecCCCCCCCCceEeccCccccCcCccce
Q 044265 70 HSAILDLQTNQ-IRPLMILTDTWCSSGQILADGTVLQTGGDLDGYKKIR--KFSPCEANGLCDWVELDDVELVNGRWYGT 146 (517)
Q Consensus 70 ~~~~yDp~t~~-w~~l~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~--~ydp~~~~~t~~W~~~~~~~m~~~R~~~s 146 (517)
...+|+...++ +.+........+....... +..+++|-. .+++. .|+.. ..+-..+ +.-..+||-.+
T Consensus 108 ~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~-~~~I~vgD~---~~sv~~~~~~~~----~~~l~~v--a~d~~~~~v~~ 177 (321)
T PF03178_consen 108 KLYVYDLDNSKTLLKKAFYDSPFYITSLSVF-KNYILVGDA---MKSVSLLRYDEE----NNKLILV--ARDYQPRWVTA 177 (321)
T ss_dssp EEEEEEEETTSSEEEEEEE-BSSSEEEEEEE-TTEEEEEES---SSSEEEEEEETT----TE-EEEE--EEESS-BEEEE
T ss_pred EEEEEEccCcccchhhheecceEEEEEEecc-ccEEEEEEc---ccCEEEEEEEcc----CCEEEEE--EecCCCccEEE
Confidence 46678877777 8877765444333333333 345556533 34555 45664 4456666 45556888888
Q ss_pred eEEcCCCcEEEEcCCCCCceEEe
Q 044265 147 DQILPDGSVIILGGKGANTVEYY 169 (517)
Q Consensus 147 ~~~L~dG~v~vvGG~~~~~~E~y 169 (517)
+..|.|++ .++++-...++-++
T Consensus 178 ~~~l~d~~-~~i~~D~~gnl~~l 199 (321)
T PF03178_consen 178 AEFLVDED-TIIVGDKDGNLFVL 199 (321)
T ss_dssp EEEE-SSS-EEEEEETTSEEEEE
T ss_pred EEEecCCc-EEEEEcCCCeEEEE
Confidence 88886777 55555444444333
No 221
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=21.25 E-value=1.1e+03 Score=25.69 Aligned_cols=51 Identities=29% Similarity=0.258 Sum_probs=36.4
Q ss_pred CcceEEEEECCCCCeEEccccCCCcccceeecCCCcEEEecCCCCCCCeEEEecC
Q 044265 67 CYAHSAILDLQTNQIRPLMILTDTWCSSGQILADGTVLQTGGDLDGYKKIRKFSP 121 (517)
Q Consensus 67 ~~~~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp 121 (517)
.-....+|++.+++.+.-...|+.--.+-..+-||+|+- ||.+ +.+-.||-
T Consensus 265 S~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKD---Rki~~Wd~ 315 (626)
T KOG2106|consen 265 SGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKD---RKIILWDD 315 (626)
T ss_pred CCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCcc---ceEEeccc
Confidence 334678999999888766556664333455678999998 8875 67777873
No 222
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=21.14 E-value=6.8e+02 Score=25.48 Aligned_cols=100 Identities=14% Similarity=0.081 Sum_probs=60.0
Q ss_pred eEEEEECCCCC-eEEccc--cCCCcccceeecCCCcEEEecCCCCCCCeEEEecC-CCCCCCCceEeccCccccCcCccc
Q 044265 70 HSAILDLQTNQ-IRPLMI--LTDTWCSSGQILADGTVLQTGGDLDGYKKIRKFSP-CEANGLCDWVELDDVELVNGRWYG 145 (517)
Q Consensus 70 ~~~~yDp~t~~-w~~l~~--~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp-~~~~~t~~W~~~~~~~m~~~R~~~ 145 (517)
.+.+|....++ |.+... +|+..-.+.---+...=+|.++.+ +..++|.. . ..+|.+. .--+...|.--
T Consensus 33 evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~d---rnayVw~~~~----~~~Wkpt-lvLlRiNrAAt 104 (361)
T KOG1523|consen 33 EVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHD---RNAYVWTQPS----GGTWKPT-LVLLRINRAAT 104 (361)
T ss_pred eEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCC---CCccccccCC----CCeeccc-eeEEEecccee
Confidence 57888887777 988764 344433222223344445666654 55667766 4 6789875 12344566554
Q ss_pred eeEEcCCCcEEEEcCCCC-CceEEeCCCCCcee
Q 044265 146 TDQILPDGSVIILGGKGA-NTVEYYPPRNGAVS 177 (517)
Q Consensus 146 s~~~L~dG~v~vvGG~~~-~~~E~yP~~~~w~~ 177 (517)
++---|+...|++|+... -++-+|-..|.|+.
T Consensus 105 ~V~WsP~enkFAVgSgar~isVcy~E~ENdWWV 137 (361)
T KOG1523|consen 105 CVKWSPKENKFAVGSGARLISVCYYEQENDWWV 137 (361)
T ss_pred eEeecCcCceEEeccCccEEEEEEEecccceeh
Confidence 555566778889887543 24444577778853
No 223
>smart00155 PLDc Phospholipase D. Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be
Probab=20.93 E-value=1.2e+02 Score=18.40 Aligned_cols=20 Identities=15% Similarity=0.370 Sum_probs=14.6
Q ss_pred eeeeeEEecCCcEEEEcCcc
Q 044265 302 IMGDMVMLPTGDVLIINGAQ 321 (517)
Q Consensus 302 ~~~~~v~lpdG~v~v~GG~~ 321 (517)
.+|.=.++.|++..++|+.+
T Consensus 4 ~~H~K~~v~D~~~~~iGs~N 23 (28)
T smart00155 4 VLHTKLMIVDDEIAYIGSAN 23 (28)
T ss_pred cEEeEEEEEcCCEEEEeCcc
Confidence 44444566799999999876
No 224
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=20.51 E-value=9.7e+02 Score=24.86 Aligned_cols=90 Identities=13% Similarity=0.121 Sum_probs=45.9
Q ss_pred cCCcceEEEEECCCCCeEEccccCC-CcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccCcCc
Q 044265 65 RDCYAHSAILDLQTNQIRPLMILTD-TWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVNGRW 143 (517)
Q Consensus 65 ~d~~~~~~~yDp~t~~w~~l~~~~~-~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~ 143 (517)
+|+ .+.+||..|+.=......|. .-+.-...-.|+.|+ .|-.+ .+|+.||..++ .+-..+ -...+.
T Consensus 255 rDs--t~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvi-t~S~D---~tvrlWDl~ag---kt~~tl----t~hkks 321 (460)
T KOG0285|consen 255 RDS--TIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVI-TGSHD---STVRLWDLRAG---KTMITL----THHKKS 321 (460)
T ss_pred Ccc--eEEEeeecccceEEEecCCCCcceeEEeecCCCceE-EecCC---ceEEEeeeccC---ceeEee----ecccce
Confidence 454 47889988765443333333 222222222366654 44443 68999998842 232222 223343
Q ss_pred cceeEEcCCCcEEEEcCCCCCceEEe
Q 044265 144 YGTDQILPDGSVIILGGKGANTVEYY 169 (517)
Q Consensus 144 ~~s~~~L~dG~v~vvGG~~~~~~E~y 169 (517)
--+.+.-|.-..|+.++.++ ++.|
T Consensus 322 vral~lhP~e~~fASas~dn--ik~w 345 (460)
T KOG0285|consen 322 VRALCLHPKENLFASASPDN--IKQW 345 (460)
T ss_pred eeEEecCCchhhhhccCCcc--ceec
Confidence 33445445556666666543 4555
No 225
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=20.29 E-value=1.2e+03 Score=25.70 Aligned_cols=140 Identities=14% Similarity=0.139 Sum_probs=0.0
Q ss_pred cccCCcceEEEEECCCCCeEEccccCCCcccceeecCCCcEEEecCCCCCCCeEEEecCCCCCCCCceEeccCccccCcC
Q 044265 63 LKRDCYAHSAILDLQTNQIRPLMILTDTWCSSGQILADGTVLQTGGDLDGYKKIRKFSPCEANGLCDWVELDDVELVNGR 142 (517)
Q Consensus 63 ~~~d~~~~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R 142 (517)
+.+|++ +.+||..+++...+... .--.--++..++.+++.|.++ ..|.+||+. +.+-... +...-
T Consensus 307 gs~D~t--VkVW~v~n~~~l~l~~~--h~~~V~~v~~~~~~lvsgs~d---~~v~VW~~~----~~~cl~s----l~gH~ 371 (537)
T KOG0274|consen 307 GSRDNT--VKVWDVTNGACLNLLRG--HTGPVNCVQLDEPLLVSGSYD---GTVKVWDPR----TGKCLKS----LSGHT 371 (537)
T ss_pred ccCCce--EEEEeccCcceEEEecc--ccccEEEEEecCCEEEEEecC---ceEEEEEhh----hceeeee----ecCCc
Q ss_pred ccceeEEcCCC-cEEEEcCCCCCceEEeCCCCCceeccchhhccccccCCCCceEEEccCCcEEEEEC--CceEEEeCCC
Q 044265 143 WYGTDQILPDG-SVIILGGKGANTVEYYPPRNGAVSFPFLADVEDKQMDNLYPYVHLLPNGHLFIFAN--DKAVMYDYET 219 (517)
Q Consensus 143 ~~~s~~~L~dG-~v~vvGG~~~~~~E~yP~~~~w~~~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~Gg--~~~~~ydp~t 219 (517)
..-...++ ++ ..++-|..+ .++.+|...+.+...-.+.. ..---..+...+++++.+. +.+.+||..+
T Consensus 372 ~~V~sl~~-~~~~~~~Sgs~D-~~IkvWdl~~~~~c~~tl~~-------h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~ 442 (537)
T KOG0274|consen 372 GRVYSLIV-DSENRLLSGSLD-TTIKVWDLRTKRKCIHTLQG-------HTSLVSSLLLRDNFLVSSSADGTIKLWDAEE 442 (537)
T ss_pred ceEEEEEe-cCcceEEeeeec-cceEeecCCchhhhhhhhcC-------CcccccccccccceeEeccccccEEEeeccc
Q ss_pred CeEEEec
Q 044265 220 NKIAREY 226 (517)
Q Consensus 220 ~~w~~~~ 226 (517)
+.-.+.+
T Consensus 443 ~~~~~~~ 449 (537)
T KOG0274|consen 443 GECLRTL 449 (537)
T ss_pred Cceeeee
No 226
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=20.06 E-value=9.1e+02 Score=25.43 Aligned_cols=180 Identities=15% Similarity=0.182 Sum_probs=0.0
Q ss_pred eCCEEEEEeccCCCCCCcccCCCcccccccccccccCCcceEEEEECCCCCeEEccccCCCcccceeecCCCcEEEecCC
Q 044265 30 RFNTVVLLDRTNIGPSRKMLGRGRCRLDRNDRALKRDCYAHSAILDLQTNQIRPLMILTDTWCSSGQILADGTVLQTGGD 109 (517)
Q Consensus 30 ~~gkv~~~gg~~~g~~~~~~~~G~~~~~~~~~~~~~d~~~~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~v~GG~ 109 (517)
++||=++.|-.. | .+.+|+-.+=.++.+...|+.--.+...+.||..+|.|-.
T Consensus 106 PeGRRLltgs~S----------G-----------------EFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~ 158 (464)
T KOG0284|consen 106 PEGRRLLTGSQS----------G-----------------EFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDK 158 (464)
T ss_pred CCCceeEeeccc----------c-----------------cEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCC
Q ss_pred C---------------------------------------CCCCeEEEecCCCCCCCCceEeccCccccCcCccceeEEc
Q 044265 110 L---------------------------------------DGYKKIRKFSPCEANGLCDWVELDDVELVNGRWYGTDQIL 150 (517)
Q Consensus 110 ~---------------------------------------~g~~~v~~ydp~~~~~t~~W~~~~~~~m~~~R~~~s~~~L 150 (517)
. .....++++|-. ..+=... |...-|-..++--
T Consensus 159 gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~----~~kee~v----L~GHgwdVksvdW 230 (464)
T KOG0284|consen 159 GGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFR----MPKEERV----LRGHGWDVKSVDW 230 (464)
T ss_pred CceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEecc----CCchhhe----eccCCCCcceecc
Q ss_pred CCCcEEEEcCCCCCceEEe-CCCCCce-eccchhhccccccCCCCceEEEccCCcEEEEECC--ceEEEeCCCCeEEEec
Q 044265 151 PDGSVIILGGKGANTVEYY-PPRNGAV-SFPFLADVEDKQMDNLYPYVHLLPNGHLFIFAND--KAVMYDYETNKIAREY 226 (517)
Q Consensus 151 ~dG~v~vvGG~~~~~~E~y-P~~~~w~-~~~~l~~t~~~~~~~~yp~~~~~~~G~iyv~Gg~--~~~~ydp~t~~w~~~~ 226 (517)
.--+=+|+.|.....+.+| |++.+.. .+.--..+.- .+...++|..++.+++ ...+||.++-+-.+.+
T Consensus 231 HP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl--------~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~ 302 (464)
T KOG0284|consen 231 HPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVL--------AVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTY 302 (464)
T ss_pred CCccceeEEccCCceeEeecCCCcchhhhhhhccceEE--------EEEEcCCCCeeEEccCCceEEEEehhHhHHHHHh
Q ss_pred CCCCCCCCCCCCCCceeeeecccCccccEEEEEcCCc
Q 044265 227 PPLDGGPRNYPSAGSSAMLALEGDFATAVIVVCGGAQ 263 (517)
Q Consensus 227 p~~p~~~r~~~~~g~~v~l~~~~~~~~gkI~v~GG~~ 263 (517)
.+.....- +..--|+ ...||+.||.+
T Consensus 303 ---r~Hkkdv~---~~~WhP~-----~~~lftsgg~D 328 (464)
T KOG0284|consen 303 ---RGHKKDVT---SLTWHPL-----NESLFTSGGSD 328 (464)
T ss_pred ---hcchhhhe---eeccccc-----cccceeeccCC
Done!