BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044266
(462 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 250 bits (639), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 148/467 (31%), Positives = 235/467 (50%), Gaps = 34/467 (7%)
Query: 3 RRPHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNALGQNNYIG-DQI 61
R+PHV+ PYP QGH+ PL ++++ L G +TF+NT+YNHKR++ + G + G
Sbjct: 7 RKPHVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFTDF 66
Query: 62 KLVSIPDGMEP-EGD---RNDLGMLTKTMVR-VMPXXXXXXXXXXXXXXXXXXTCVVADG 116
SIPDG+ P EGD D+ L +++ + + TC+V+D
Sbjct: 67 NFESIPDGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLNHSTNVPPVTCLVSDC 126
Query: 117 SMGWVMEVAEKMKXXXXXXXXXXXXXXXXSFSVQRFLDDGIVD-------DNGTPVKQQM 169
M + ++ AE+ + + F++ GI+ NG +
Sbjct: 127 CMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFKDESYLTNG--CLETK 184
Query: 170 IQLAPTMAAIHSSKLVWACIGDFNTQKIVFDFTIDNNETIKKAERLICNSTYDLEPGALD 229
+ P + +V I N I+ +F I+ + + K ++ N+ +LE ++
Sbjct: 185 VDWIPGLKNFRLKDIV-DFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNELESDVIN 243
Query: 230 ----LIPEFLPIGPLLS-------SNRLGNSAGYFWPEDSTCLKWLDQQQQNSVIYVAFG 278
IP PIGPL S ++L + W ED+ CL WL+ ++ SV+YV FG
Sbjct: 244 ALSSTIPSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESKEPGSVVYVNFG 303
Query: 279 SFTVFDKEQFQELASGLELTNRPFLWVVRPDITNDAIDAYPEGFQDRVATRRQMVGWAPQ 338
S TV EQ E A GL + FLW++RPD+ + F + +A R + W PQ
Sbjct: 304 STTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVIFSSEFTNEIADRGLIASWCPQ 363
Query: 339 QKVLTHPSIACFLSHCGWNSTMEGVSNGVPFLCWPYFADQFLNESYICDIWKVGLRFNKN 398
KVL HPSI FL+HCGWNST E + GVP LCWP+FADQ + +IC+ W++G+ + N
Sbjct: 364 DKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEIDTN 423
Query: 399 KNGIITREEIMKKVDQVL---EDENFKARALDLKETSLNSVREGGQS 442
+ REE+ K +++V+ + + K +A++LK+ + + R GG S
Sbjct: 424 ----VKREELAKLINEVIAGDKGKKMKQKAMELKKKAEENTRPGGCS 466
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 166 bits (420), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 93/272 (34%), Positives = 144/272 (52%), Gaps = 27/272 (9%)
Query: 198 VFDFTIDNNETIKKAERLICNSTYDLEPGALDLI-------PEFLPIGPLLSSNRLGNSA 250
+ + + N + K+AE ++ N+ ++LEP A+ + P P+GPL++ +
Sbjct: 193 AYKWLLHNTKRYKEAEGILVNTFFELEPNAIKALQEPGLDKPPVYPVGPLVNIGKQEAKQ 252
Query: 251 GYFWPEDSTCLKWLDQQQQNSVIYVAFGSFTVFDKEQFQELASGLELTNRPFLWVVRP-- 308
E+S CLKWLD Q SV+YV+FGS EQ ELA GL + + FLWV+R
Sbjct: 253 T----EESECLKWLDNQPLGSVLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIRSPS 308
Query: 309 DITN----------DAIDAYPEGFQDRVATRRQMVG-WAPQQKVLTHPSIACFLSHCGWN 357
I N D + P GF +R R ++ WAPQ +VL HPS FL+HCGWN
Sbjct: 309 GIANSSYFDSHSQTDPLTFLPPGFLERTKKRGFVIPFWAPQAQVLAHPSTGGFLTHCGWN 368
Query: 358 STMEGVSNGVPFLCWPYFADQFLNESYICDIWKVGLRFNKNKNGIITREEIMKKVDQVLE 417
ST+E V +G+P + WP +A+Q +N + + + LR +G++ REE+ + V ++E
Sbjct: 369 STLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRPRAGDDGLVRREEVARVVKGLME 428
Query: 418 DENFKA---RALDLKETSLNSVREGGQSDKTF 446
E K + +LKE + +++ G S K
Sbjct: 429 GEEGKGVRNKMKELKEAACRVLKDDGTSTKAL 460
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 3 RRPHVLAFPYPAQGHVIPLLEISQCLVK-HGVKVTFL 38
+ PHV P P GH+IPL+E ++ LV HG+ VTF+
Sbjct: 5 KTPHVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFV 41
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 142 bits (359), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 67/203 (33%), Positives = 112/203 (55%), Gaps = 10/203 (4%)
Query: 256 EDSTCLKWLDQQQQNSVIYVAFGSFTVFDKEQFQELASGLELTNRPFLWVVRPDITNDAI 315
++ CL+WLDQ + +SV+Y++FGS + LA LE PF+W R D
Sbjct: 259 DEHGCLEWLDQHENSSVVYISFGSVVTPPPHELTALAESLEECGFPFIWSFR----GDPK 314
Query: 316 DAYPEGFQDRVATRRQMVGWAPQQKVLTHPSIACFLSHCGWNSTMEGVSNGVPFLCWPYF 375
+ P+GF +R T+ ++V WAPQ ++L H S+ FL+H GWNS +E + GVP + P+F
Sbjct: 315 EKLPKGFLERTKTKGKIVAWAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFF 374
Query: 376 ADQFLNESYICDIWKVGLRFNKNKNGIITREEIMKKVDQVLEDEN---FKARALDLKETS 432
DQ LN + ++G+ + NG++T+E I K ++ + E + + + LKE++
Sbjct: 375 GDQGLNTILTESVLEIGVGVD---NGVLTKESIKKALELTMSSEKGGIMRQKIVKLKESA 431
Query: 433 LNSVREGGQSDKTFKNFVQWIKA 455
+V + G S F +Q + +
Sbjct: 432 FKAVEQNGTSAMDFTTLIQIVTS 454
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 140 bits (352), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 120/469 (25%), Positives = 209/469 (44%), Gaps = 49/469 (10%)
Query: 5 PHVLAFPYPAQGHVIPLLEISQCLVK---HGVKVTFLNTDYNHKRVVNALGQNNYIGDQI 61
PHV +P H PLL + + L H V +F +T ++ + + + + I
Sbjct: 8 PHVAVLAFPFSTHAAPLLAVVRRLAAAAPHAV-FSFFSTSQSNASIFH--DSMHTMQCNI 64
Query: 62 KLVSIPDGMEPEG------DRNDLGMLTKTMVRVMPXXXXXXXXXXXXXXXXXXTCVVAD 115
K I DG+ PEG + D+ + T R P +C+VAD
Sbjct: 65 KSYDISDGV-PEGYVFAGRPQEDIELFT----RAAPESFRQGMVMAVAETGRPVSCLVAD 119
Query: 116 GSMGWVMEVAEKMKXXXXXXXXXXXXXXXXSFSVQRFLDD-----GIVDDNGTPVKQQMI 170
+ + ++A +M S S ++D+ G+ G + +++
Sbjct: 120 AFIWFAADMAAEMGVAWLPFWTAGPN----SLSTHVYIDEIREKIGVSGIQGR--EDELL 173
Query: 171 QLAPTMAAIHSSKLVWACI-GDFNTQKIVFDFTIDN-NETIKKAERLICNSTYDLEPGAL 228
P M+ + L + G+ N+ +F + + + KA + NS +L+
Sbjct: 174 NFIPGMSKVRFRDLQEGIVFGNLNS---LFSRMLHRMGQVLPKATAVFINSFEELDDSLT 230
Query: 229 -DL---IPEFLPIGPLLSSNRLGNSAGYFWPEDSTCLKWLDQQQQNSVIYVAFGSFTVFD 284
DL + +L IGP N + + P + CL+WL +++ SV+Y++FG+ T
Sbjct: 231 NDLKSKLKTYLNIGPF---NLI--TPPPVVPNTTGCLQWLKERKPTSVVYISFGTVTTPP 285
Query: 285 KEQFQELASGLELTNRPFLWVVRPDITNDAIDAYPEGFQDRVATRRQMVGWAPQQKVLTH 344
+ L+ LE + PF+W +R + A PEGF ++ +V WAPQ +VL H
Sbjct: 286 PAEVVALSEALEASRVPFIWSLR----DKARVHLPEGFLEKTRGYGMVVPWAPQAEVLAH 341
Query: 345 PSIACFLSHCGWNSTMEGVSNGVPFLCWPYFADQFLNESYICDIWKVGLRFNKNKNGIIT 404
++ F++HCGWNS E V+ GVP +C P+F DQ LN + D+ ++G+R + G+ T
Sbjct: 342 EAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRI---EGGVFT 398
Query: 405 REEIMKKVDQVLEDENFKARALDLKETSLNSVREGGQSDKTFKNFVQWI 453
+ +M DQ+L E K +L+ + R G + +NF+ +
Sbjct: 399 KSGLMSCFDQILSQEKGKKLRENLRALRETADRAVGPKGSSTENFITLV 447
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 86/251 (34%), Positives = 129/251 (51%), Gaps = 22/251 (8%)
Query: 207 ETIKKAERLICNSTYDLEPGALDL-------IPEFLPIGPLLSSNRLGNSAGYFWPEDST 259
E + + +I N+ DLE ++D IP +GPLL N +
Sbjct: 207 ERFRDTKGIIVNTFSDLEQSSIDALYDHDEKIPPIYAVGPLLDLKGQPNPK-LDQAQHDL 265
Query: 260 CLKWLDQQQQNSVIYVAFGSFTV-FDKEQFQELASGLELTNRPFLWVVRPDITNDA-IDA 317
LKWLD+Q SV+++ FGS V F Q +E+A GL+ + FLW +N A
Sbjct: 266 ILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLW------SNSAEKKV 319
Query: 318 YPEGFQD--RVATRRQMVGWAPQQKVLTHPSIACFLSHCGWNSTMEGVSNGVPFLCWPYF 375
+PEGF + + + + GWAPQ +VL H +I F+SHCGWNS +E + GVP L WP +
Sbjct: 320 FPEGFLEWMELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIY 379
Query: 376 ADQFLNESYICDIWKVGLRFN---KNKNGIITREEIMKKVDQVLE-DENFKARALDLKET 431
A+Q LN + W VGL + + ++ EEI K + +++ D + ++KE
Sbjct: 380 AEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMDKDSIVHKKVQEMKEM 439
Query: 432 SLNSVREGGQS 442
S N+V +GG S
Sbjct: 440 SRNAVVDGGSS 450
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 86/251 (34%), Positives = 129/251 (51%), Gaps = 22/251 (8%)
Query: 207 ETIKKAERLICNSTYDLEPGALDL-------IPEFLPIGPLLSSNRLGNSAGYFWPEDST 259
E + + +I N+ DLE ++D IP +GPLL N +
Sbjct: 207 ERFRDTKGIIVNTFSDLEQSSIDALYDHDEKIPPIYAVGPLLDLKGQPNPK-LDQAQHDL 265
Query: 260 CLKWLDQQQQNSVIYVAFGSFTV-FDKEQFQELASGLELTNRPFLWVVRPDITNDA-IDA 317
LKWLD+Q SV+++ FGS V F Q +E+A GL+ + FLW +N A
Sbjct: 266 ILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLW------SNSAEKKV 319
Query: 318 YPEGFQD--RVATRRQMVGWAPQQKVLTHPSIACFLSHCGWNSTMEGVSNGVPFLCWPYF 375
+PEGF + + + + GWAPQ +VL H +I F+SHCGWNS +E + GVP L WP +
Sbjct: 320 FPEGFLEWMELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIY 379
Query: 376 ADQFLNESYICDIWKVGLRFN---KNKNGIITREEIMKKVDQVLE-DENFKARALDLKET 431
A+Q LN + W VGL + + ++ EEI K + +++ D + ++KE
Sbjct: 380 AEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMDKDSIVHKKVQEMKEM 439
Query: 432 SLNSVREGGQS 442
S N+V +GG S
Sbjct: 440 SRNAVVDGGSS 450
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 6/96 (6%)
Query: 335 WAPQQKVLTHPSIACFLSHCGWNSTMEGVSNGVPFLCWPYFADQFLNESYICDIWKVGLR 394
W PQ +LT S F++H G STME +SN VP + P A+Q +N I ++ +G
Sbjct: 312 WVPQLDILTKAS--AFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVEL-GLGRH 368
Query: 395 FNKNKNGIITREEIMKKVDQVLEDENFKARALDLKE 430
+++ +T E++ + V V D R +++
Sbjct: 369 IPRDQ---VTAEKLREAVLAVASDPGVAERLAAVRQ 401
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 6 HVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNALGQNNYIGDQI-KLV 64
H+ F P GHV P L I Q LV G +V++ TD V A G + D I
Sbjct: 14 HISFFNIPGHGHVNPSLGIVQELVARGHRVSYAITD-EFAAQVKAAGATPVVYDSILPKE 72
Query: 65 SIPDGMEPEGDRNDLGMLTKTMVRVMP 91
S P+ PE + +G+ VRV+P
Sbjct: 73 SNPEESWPEDQESAMGLFLDEAVRVLP 99
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 70/168 (41%), Gaps = 19/168 (11%)
Query: 263 WLDQQQQNSVIYVAFGS-FTVFDKEQFQELASGLELTNRPFLWVVRPDITNDAIDAYPEG 321
++ +N V+ + GS + +E+ +AS L + LW +
Sbjct: 14 FVQSSGENGVVVFSLGSXVSNXTEERANVIASALAQIPQKVLW------------RFDGN 61
Query: 322 FQDRVATRRQMVGWAPQQKVLTHPSIACFLSHCGWNSTMEGVSNGVPFLCWPYFADQFLN 381
D + ++ W PQ +L HP F++H G N E + +G+P + P FADQ N
Sbjct: 62 KPDTLGLNTRLYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDN 121
Query: 382 ESYI-CDIWKVGLRFNKNKNGIITREEIMKKVDQVLEDENFKARALDL 428
++ V + FN + +++ + +V+ D ++K L
Sbjct: 122 IAHXKARGAAVRVDFN-----TXSSTDLLNALKRVINDPSYKENVXKL 164
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 46/116 (39%), Gaps = 14/116 (12%)
Query: 335 WAPQQKVLTHPSIACFLSHCGWNSTMEGVSNGVPFLCWPYFADQFLNESYICDIWKVGLR 394
W PQ +L + F++H G + EG++ P + P DQF N + +
Sbjct: 290 WVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADMLQGLGVARKL 347
Query: 395 FNKNKNGIITRE---------EIMKKVDQV---LEDENFKARALDLKETSLNSVRE 438
+ + RE E+ +++ ++ + E RA DL E L + E
Sbjct: 348 ATEEATADLLRETALALVDDPEVARRLRRIQAEMAQEGGTRRAADLIEAELPARHE 403
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 6 HVLAFPYPAQGHVIPLLEISQCLVKHGVKVTF 37
H+ F A GHV P LE+ + LV G +VT+
Sbjct: 9 HIAMFSIAAHGHVNPSLEVIRELVARGHRVTY 40
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 32/169 (18%), Positives = 62/169 (36%), Gaps = 15/169 (8%)
Query: 256 EDSTCLKWLDQQQ-QNSVIYVAFGSFTVFDKEQFQELASGLELTNRPFLWVVRPDITNDA 314
E WL + ++Y+ G+ + E + GL + L P +
Sbjct: 227 EQGDLPAWLSSRDTARPLVYLTLGTSSGGTVEVLRAAIDGLAGLDADVLVASGPSLDVSG 286
Query: 315 IDAYPEGFQDRVATRRQMVGWAPQQKVLTHPSIACFLSHCGWNSTMEGVSNGVPFLCWPY 374
+ P + + W PQ +L H + + H G +T+ + GVP L +P+
Sbjct: 287 LGEVPANVR--------LESWVPQAALLPH--VDLVVHHGGSGTTLGALGAGVPQLSFPW 336
Query: 375 FADQFLNESYICDIWKVGLRFNKNKNGIITREEIMKKVDQVLEDENFKA 423
D F N + N I+ + + ++L +E+++A
Sbjct: 337 AGDSFANAQAVAQAGAGDHLLPDN----ISPDSVSGAAKRLLAEESYRA 381
>pdb|2P6P|A Chain A, X-Ray Crystal Structure Of C-C Bond-Forming
Dtdp-D-Olivose-Transferase Urdgt2
pdb|2P6P|B Chain B, X-Ray Crystal Structure Of C-C Bond-Forming
Dtdp-D-Olivose-Transferase Urdgt2
Length = 384
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 32/71 (45%), Gaps = 11/71 (15%)
Query: 303 LWVVRPDITNDAIDAYPEGFQDRVATRRQMVGWAPQQKVLTHPSIACFLSHCGWNSTMEG 362
L V PD +A+ A E Q RV GW P V P+ + H G ST+ G
Sbjct: 247 LIVAAPDTVAEALRA--EVPQARV-------GWTPLDVV--APTCDLLVHHAGGVSTLTG 295
Query: 363 VSNGVPFLCWP 373
+S GVP L P
Sbjct: 296 LSAGVPQLLIP 306
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 335 WAPQQKVLTHPSIACFLSHCGWNSTMEGVSNGVPFLCWPYFADQ 378
W P VL H + AC L+H + +E + GVP + P+FA +
Sbjct: 288 WIPFHSVLAH-ARAC-LTHGTTGAVLEAFAAGVPLVLVPHFATE 329
>pdb|3OPY|A Chain A, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|C Chain C, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|E Chain E, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|G Chain G, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
Length = 989
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 38/95 (40%), Gaps = 9/95 (9%)
Query: 353 HCGWNSTMEGVSNGVPFLCWPYFADQFLNESYICDIWKVGLRF---NKNKNGIITREEIM 409
HCGW M G++ G ++ P N + D+ KV LR + K +I E +
Sbjct: 406 HCGWLGLMSGIATGADYIFIPERPPSESN--WKDDLKKVCLRHREKGRRKTTVIVAEGAI 463
Query: 410 KKVDQVLEDENFK----ARALDLKETSLNSVREGG 440
+ E K LD + T L V+ GG
Sbjct: 464 DDQLNPITSEEVKDVLVEIGLDTRITRLGHVQRGG 498
>pdb|3OPY|B Chain B, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|D Chain D, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|F Chain F, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|H Chain H, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
Length = 941
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 8/97 (8%)
Query: 353 HCGWNSTMEGVSNGVPFLCWPYF-ADQFLNESYICDIWKVGLRFNKNKNGIITREEIMK- 410
HCGW + G++ ++ P A + +CDI K K +I E +
Sbjct: 378 HCGWLGLLAGLATSADYILIPEKPASSREWQDQMCDIVGKHRARGKRKTIVIVAEGAISN 437
Query: 411 -----KVDQVLEDENFKARALDLKETSLNSVREGGQS 442
DQV +D LD + T+L V+ GG +
Sbjct: 438 DLSPISCDQV-KDVLVNRLGLDTRVTTLGHVQRGGTA 473
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,213,467
Number of Sequences: 62578
Number of extensions: 535289
Number of successful extensions: 1588
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1556
Number of HSP's gapped (non-prelim): 24
length of query: 462
length of database: 14,973,337
effective HSP length: 102
effective length of query: 360
effective length of database: 8,590,381
effective search space: 3092537160
effective search space used: 3092537160
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)