Query 044266
Match_columns 462
No_of_seqs 140 out of 1238
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 13:00:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044266.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044266hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02562 UDP-glycosyltransfera 100.0 2.8E-69 6E-74 522.7 43.8 436 1-454 3-448 (448)
2 PLN02410 UDP-glucoronosyl/UDP- 100.0 2.7E-67 5.9E-72 507.0 42.1 432 4-455 7-450 (451)
3 PLN02555 limonoid glucosyltran 100.0 1.8E-66 3.9E-71 502.9 42.6 447 4-457 7-471 (480)
4 PLN02173 UDP-glucosyl transfer 100.0 1.8E-66 3.8E-71 498.8 41.5 426 1-454 1-447 (449)
5 PLN02207 UDP-glycosyltransfera 100.0 3.9E-66 8.4E-71 498.2 43.0 442 2-455 1-465 (468)
6 PLN02152 indole-3-acetate beta 100.0 4.6E-66 9.9E-71 496.8 42.5 431 3-453 2-454 (455)
7 PLN02210 UDP-glucosyl transfer 100.0 8.9E-66 1.9E-70 498.6 41.3 430 3-454 7-454 (456)
8 PLN02863 UDP-glucoronosyl/UDP- 100.0 5.5E-65 1.2E-69 494.4 42.3 442 3-455 8-471 (477)
9 PLN02554 UDP-glycosyltransfera 100.0 2.9E-65 6.3E-70 500.3 40.5 439 4-456 2-479 (481)
10 PLN02992 coniferyl-alcohol glu 100.0 7.6E-65 1.6E-69 490.1 42.1 428 3-455 4-469 (481)
11 PLN00164 glucosyltransferase; 100.0 2.9E-64 6.2E-69 491.2 41.7 439 3-457 2-475 (480)
12 PLN02448 UDP-glycosyltransfera 100.0 3.6E-64 7.8E-69 491.0 41.6 432 3-456 9-458 (459)
13 PLN02167 UDP-glycosyltransfera 100.0 3.8E-64 8.3E-69 491.7 40.9 446 3-458 2-475 (475)
14 PLN03004 UDP-glycosyltransfera 100.0 3.3E-64 7.2E-69 483.4 38.7 429 4-444 3-450 (451)
15 PLN02534 UDP-glycosyltransfera 100.0 1.6E-63 3.4E-68 482.9 41.8 445 1-460 5-491 (491)
16 PLN02670 transferase, transfer 100.0 2.7E-63 5.9E-68 479.0 40.6 436 2-457 4-467 (472)
17 PLN03007 UDP-glucosyltransfera 100.0 6.1E-63 1.3E-67 484.7 43.1 437 4-455 5-480 (482)
18 PLN03015 UDP-glucosyl transfer 100.0 6.4E-63 1.4E-67 473.8 41.6 432 4-453 3-466 (470)
19 PLN02764 glycosyltransferase f 100.0 4E-63 8.8E-68 473.8 39.9 422 3-460 4-450 (453)
20 PLN02208 glycosyltransferase f 100.0 2.6E-63 5.6E-68 478.2 37.8 414 1-455 1-439 (442)
21 PLN00414 glycosyltransferase f 100.0 6.5E-62 1.4E-66 469.0 38.5 416 1-457 1-442 (446)
22 PHA03392 egt ecdysteroid UDP-g 100.0 8.6E-54 1.9E-58 420.4 28.7 399 4-434 20-448 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 1.1E-53 2.5E-58 427.8 4.6 394 5-435 1-426 (500)
24 TIGR01426 MGT glycosyltransfer 100.0 1.7E-45 3.7E-50 357.4 33.0 366 11-435 2-376 (392)
25 cd03784 GT1_Gtf_like This fami 100.0 6.2E-45 1.3E-49 355.2 26.0 364 5-434 1-387 (401)
26 KOG1192 UDP-glucuronosyl and U 100.0 2.5E-44 5.3E-49 360.7 20.8 406 4-434 5-438 (496)
27 COG1819 Glycosyl transferases, 100.0 8.7E-43 1.9E-47 333.7 21.3 393 4-455 1-400 (406)
28 PRK12446 undecaprenyldiphospho 100.0 3.1E-26 6.7E-31 216.9 26.9 319 5-427 2-335 (352)
29 PF13528 Glyco_trans_1_3: Glyc 99.9 9E-26 1.9E-30 213.3 24.2 307 5-415 1-317 (318)
30 TIGR00661 MJ1255 conserved hyp 99.9 6.4E-24 1.4E-28 200.0 23.4 308 6-422 1-318 (321)
31 COG0707 MurG UDP-N-acetylgluco 99.9 2.1E-21 4.5E-26 181.6 27.6 323 5-434 1-337 (357)
32 PRK00726 murG undecaprenyldiph 99.9 1.1E-20 2.3E-25 181.6 25.9 342 5-452 2-354 (357)
33 cd03785 GT1_MurG MurG is an N- 99.8 8.6E-19 1.9E-23 168.1 24.6 324 6-427 1-333 (350)
34 TIGR00215 lpxB lipid-A-disacch 99.8 6.9E-18 1.5E-22 162.3 21.5 350 5-449 6-382 (385)
35 TIGR01133 murG undecaprenyldip 99.8 5.2E-17 1.1E-21 155.7 24.3 316 6-427 2-330 (348)
36 PRK13609 diacylglycerol glucos 99.8 3.5E-17 7.5E-22 158.6 21.0 141 269-427 201-347 (380)
37 COG4671 Predicted glycosyl tra 99.7 7.2E-16 1.6E-20 137.2 23.2 333 3-419 8-366 (400)
38 TIGR03590 PseG pseudaminic aci 99.7 2.8E-16 6.2E-21 144.2 20.2 250 14-384 13-278 (279)
39 PRK00025 lpxB lipid-A-disaccha 99.7 3.9E-15 8.4E-20 144.4 22.1 348 5-453 2-375 (380)
40 PRK13608 diacylglycerol glucos 99.6 5.6E-14 1.2E-18 136.1 23.3 138 268-423 200-343 (391)
41 PLN02605 monogalactosyldiacylg 99.6 2.3E-13 4.9E-18 131.7 24.3 144 268-427 204-357 (382)
42 PF04101 Glyco_tran_28_C: Glyc 99.5 2.5E-16 5.4E-21 133.7 -2.6 139 272-421 1-147 (167)
43 TIGR03492 conserved hypothetic 99.5 3.2E-12 6.8E-17 123.3 24.2 332 13-426 5-372 (396)
44 cd03814 GT1_like_2 This family 99.5 1.6E-11 3.4E-16 118.1 28.1 320 15-432 14-346 (364)
45 PF03033 Glyco_transf_28: Glyc 99.5 2.5E-13 5.4E-18 111.7 8.8 125 7-141 1-133 (139)
46 PLN02871 UDP-sulfoquinovose:DA 99.4 4.3E-10 9.2E-15 111.9 30.7 134 272-427 264-409 (465)
47 cd03818 GT1_ExpC_like This fam 99.4 6E-10 1.3E-14 108.7 28.2 86 327-424 280-372 (396)
48 cd03823 GT1_ExpE7_like This fa 99.4 5.5E-10 1.2E-14 107.0 27.0 88 327-426 242-337 (359)
49 cd03816 GT1_ALG1_like This fam 99.4 8.7E-10 1.9E-14 107.9 28.0 77 328-418 294-381 (415)
50 cd03794 GT1_wbuB_like This fam 99.4 5.2E-10 1.1E-14 108.3 25.9 347 6-429 1-376 (394)
51 cd03801 GT1_YqgM_like This fam 99.3 2.8E-09 6.1E-14 102.1 28.1 312 15-425 14-348 (374)
52 cd04962 GT1_like_5 This family 99.3 2.8E-09 6E-14 103.0 28.2 86 327-424 252-342 (371)
53 cd03808 GT1_cap1E_like This fa 99.3 2.7E-09 5.9E-14 101.9 27.8 321 6-427 1-338 (359)
54 cd03800 GT1_Sucrose_synthase T 99.3 2.1E-09 4.6E-14 104.9 27.2 329 15-423 21-373 (398)
55 COG3980 spsG Spore coat polysa 99.3 2.3E-10 5E-15 99.4 17.2 296 5-431 1-306 (318)
56 cd03817 GT1_UGDG_like This fam 99.3 3.2E-09 7E-14 102.2 27.0 83 327-422 258-347 (374)
57 PRK05749 3-deoxy-D-manno-octul 99.2 4.5E-09 9.8E-14 103.5 26.1 83 340-432 315-402 (425)
58 TIGR00236 wecB UDP-N-acetylglu 99.2 1.1E-09 2.4E-14 105.6 20.4 137 270-427 197-343 (365)
59 PRK10307 putative glycosyl tra 99.2 2.1E-08 4.6E-13 98.4 29.4 135 270-424 228-379 (412)
60 TIGR03449 mycothiol_MshA UDP-N 99.2 2E-08 4.4E-13 98.3 28.3 90 327-428 282-378 (405)
61 cd03825 GT1_wcfI_like This fam 99.2 7.6E-09 1.6E-13 99.6 25.0 85 326-422 242-334 (365)
62 cd03805 GT1_ALG2_like This fam 99.2 1.1E-08 2.3E-13 99.8 26.2 85 327-424 279-370 (392)
63 cd03798 GT1_wlbH_like This fam 99.2 3.4E-08 7.4E-13 94.8 27.6 83 327-421 258-347 (377)
64 cd03795 GT1_like_4 This family 99.2 1.7E-08 3.6E-13 97.0 24.8 134 271-423 191-337 (357)
65 cd03820 GT1_amsD_like This fam 99.1 4.1E-08 8.9E-13 93.3 26.0 94 327-432 234-333 (348)
66 cd03786 GT1_UDP-GlcNAc_2-Epime 99.1 9.9E-10 2.1E-14 105.9 14.5 136 269-424 197-343 (363)
67 cd03821 GT1_Bme6_like This fam 99.1 6.3E-08 1.4E-12 93.1 25.9 89 327-429 261-356 (375)
68 cd05844 GT1_like_7 Glycosyltra 99.1 4.4E-08 9.6E-13 94.5 24.4 86 327-424 244-342 (367)
69 TIGR02468 sucrsPsyn_pln sucros 99.1 1.1E-07 2.4E-12 99.5 27.6 366 15-428 195-647 (1050)
70 TIGR02472 sucr_P_syn_N sucrose 99.1 2.3E-07 5E-12 91.6 28.6 86 327-422 316-410 (439)
71 PF04007 DUF354: Protein of un 99.1 1.1E-07 2.4E-12 88.4 24.3 300 5-416 1-308 (335)
72 cd03796 GT1_PIG-A_like This fa 99.1 1.5E-07 3.2E-12 92.0 26.1 79 327-419 249-334 (398)
73 cd03811 GT1_WabH_like This fam 99.0 1.2E-07 2.6E-12 90.2 23.4 319 6-427 1-341 (353)
74 PRK09922 UDP-D-galactose:(gluc 99.0 1.2E-07 2.6E-12 91.1 23.1 134 271-421 180-327 (359)
75 PLN02275 transferase, transfer 99.0 2.7E-07 5.8E-12 89.1 25.4 126 1-137 1-134 (371)
76 cd03819 GT1_WavL_like This fam 99.0 5.5E-07 1.2E-11 86.4 27.4 138 270-423 184-336 (355)
77 cd03812 GT1_CapH_like This fam 99.0 5.2E-07 1.1E-11 86.6 26.4 86 327-425 248-338 (358)
78 cd03799 GT1_amsK_like This is 98.9 4.1E-07 8.9E-12 87.2 24.5 84 327-422 235-331 (355)
79 cd03822 GT1_ecORF704_like This 98.9 4.1E-07 8.8E-12 87.4 24.4 84 327-423 246-339 (366)
80 cd03802 GT1_AviGT4_like This f 98.9 1.9E-07 4.1E-12 88.8 21.5 128 272-419 172-309 (335)
81 cd04955 GT1_like_6 This family 98.9 6.4E-07 1.4E-11 86.2 24.4 129 274-424 196-336 (363)
82 cd03807 GT1_WbnK_like This fam 98.9 3.8E-06 8.3E-11 80.3 29.2 81 327-421 250-335 (365)
83 TIGR03088 stp2 sugar transfera 98.9 2.5E-06 5.3E-11 82.6 27.5 84 328-423 255-343 (374)
84 PRK01021 lpxB lipid-A-disaccha 98.9 1.1E-06 2.3E-11 86.8 23.9 214 211-445 361-598 (608)
85 TIGR02470 sucr_synth sucrose s 98.9 9.9E-06 2.2E-10 83.3 31.7 88 327-424 618-719 (784)
86 TIGR02149 glgA_Coryne glycogen 98.9 2.6E-06 5.6E-11 82.9 26.8 140 272-424 202-358 (388)
87 COG1519 KdtA 3-deoxy-D-manno-o 98.9 1.1E-05 2.5E-10 75.4 28.9 316 7-434 51-402 (419)
88 PRK14089 ipid-A-disaccharide s 98.8 3E-07 6.6E-12 86.3 18.5 148 270-432 167-332 (347)
89 cd03809 GT1_mtfB_like This fam 98.8 9.1E-07 2E-11 85.0 22.5 92 326-431 251-349 (365)
90 PLN02846 digalactosyldiacylgly 98.8 1.2E-06 2.6E-11 85.2 22.3 73 332-419 288-364 (462)
91 cd04951 GT1_WbdM_like This fam 98.8 3.5E-06 7.6E-11 80.9 23.9 92 327-432 244-341 (360)
92 cd03792 GT1_Trehalose_phosphor 98.8 5.1E-06 1.1E-10 80.3 24.7 110 327-453 251-369 (372)
93 PF02684 LpxB: Lipid-A-disacch 98.7 2.8E-06 6E-11 80.4 21.1 213 211-445 133-367 (373)
94 PRK15427 colanic acid biosynth 98.7 1.3E-05 2.8E-10 78.3 26.1 112 327-453 278-403 (406)
95 TIGR03087 stp1 sugar transfera 98.7 2.8E-06 6.1E-11 82.9 20.7 85 327-425 279-369 (397)
96 TIGR03568 NeuC_NnaA UDP-N-acet 98.7 5.2E-06 1.1E-10 79.5 21.2 132 270-421 201-341 (365)
97 cd03804 GT1_wbaZ_like This fam 98.7 1.6E-06 3.6E-11 83.1 17.8 134 273-428 197-337 (351)
98 PLN02949 transferase, transfer 98.6 4.6E-05 9.9E-10 75.2 27.6 114 327-457 334-461 (463)
99 cd03806 GT1_ALG11_like This fa 98.6 1.9E-05 4.2E-10 77.4 24.3 80 327-419 304-393 (419)
100 PF02350 Epimerase_2: UDP-N-ac 98.6 5.3E-07 1.1E-11 85.4 11.0 138 268-426 178-326 (346)
101 PRK00654 glgA glycogen synthas 98.5 6.4E-05 1.4E-09 74.9 25.4 131 271-417 282-427 (466)
102 PRK15179 Vi polysaccharide bio 98.5 0.00015 3.2E-09 74.6 28.1 93 327-429 573-674 (694)
103 PLN00142 sucrose synthase 98.5 6.8E-05 1.5E-09 77.3 25.1 66 350-425 670-743 (815)
104 TIGR02095 glgA glycogen/starch 98.5 8E-05 1.7E-09 74.5 24.6 136 271-422 291-445 (473)
105 cd04950 GT1_like_1 Glycosyltra 98.4 0.00016 3.4E-09 70.0 23.3 79 327-419 253-341 (373)
106 cd03791 GT1_Glycogen_synthase_ 98.3 0.00023 4.9E-09 71.4 24.3 132 270-417 295-441 (476)
107 PLN02501 digalactosyldiacylgly 98.3 0.00019 4.1E-09 72.1 22.5 79 329-422 602-685 (794)
108 KOG3349 Predicted glycosyltran 98.3 2E-06 4.4E-11 67.6 7.0 117 272-396 5-133 (170)
109 COG0763 LpxB Lipid A disacchar 98.3 7.7E-05 1.7E-09 69.2 18.4 343 5-453 2-379 (381)
110 TIGR02918 accessory Sec system 98.3 9.4E-05 2E-09 73.8 20.4 147 271-432 319-484 (500)
111 COG0381 WecB UDP-N-acetylgluco 98.3 0.00018 3.8E-09 67.0 20.3 143 270-433 204-356 (383)
112 cd03813 GT1_like_3 This family 98.2 0.00049 1.1E-08 68.8 22.0 90 327-427 353-451 (475)
113 PLN02316 synthase/transferase 98.1 0.002 4.2E-08 68.6 25.4 84 327-418 899-998 (1036)
114 cd04949 GT1_gtfA_like This fam 98.0 0.00027 5.9E-09 68.3 16.8 86 327-421 260-348 (372)
115 cd04946 GT1_AmsK_like This fam 98.0 0.00015 3.3E-09 70.9 14.4 112 327-450 288-406 (407)
116 PF00534 Glycos_transf_1: Glyc 97.9 0.00011 2.4E-09 62.3 10.0 92 326-429 71-169 (172)
117 PRK15484 lipopolysaccharide 1, 97.9 0.00064 1.4E-08 65.9 16.1 86 326-422 255-348 (380)
118 PF13844 Glyco_transf_41: Glyc 97.9 0.00028 6E-09 68.4 13.2 142 270-425 284-437 (468)
119 PRK15490 Vi polysaccharide bio 97.8 0.014 3E-07 58.0 24.2 64 327-397 454-522 (578)
120 cd01635 Glycosyltransferase_GT 97.7 0.0035 7.6E-08 55.4 17.6 48 327-376 160-215 (229)
121 PRK14099 glycogen synthase; Pr 97.7 0.015 3.2E-07 58.2 23.3 40 3-42 2-47 (485)
122 TIGR02193 heptsyl_trn_I lipopo 97.6 0.016 3.4E-07 54.7 20.8 108 6-134 1-111 (319)
123 PRK10125 putative glycosyl tra 97.5 0.023 5E-07 55.4 20.7 114 273-412 243-365 (405)
124 PRK10017 colanic acid biosynth 97.5 0.12 2.7E-06 50.4 25.5 178 262-455 226-424 (426)
125 COG5017 Uncharacterized conser 97.4 0.00077 1.7E-08 52.3 7.6 108 273-396 2-122 (161)
126 COG1817 Uncharacterized protei 97.4 0.098 2.1E-06 47.3 22.6 111 6-139 2-114 (346)
127 PF13692 Glyco_trans_1_4: Glyc 97.2 0.00068 1.5E-08 54.9 5.7 80 327-418 52-135 (135)
128 PRK09814 beta-1,6-galactofuran 97.1 0.0017 3.6E-08 61.7 8.1 108 327-451 206-331 (333)
129 PF13477 Glyco_trans_4_2: Glyc 97.0 0.013 2.9E-07 47.5 11.6 103 6-137 1-107 (139)
130 PF06722 DUF1205: Protein of u 96.9 0.0016 3.5E-08 48.8 4.2 54 256-309 26-84 (97)
131 PHA01633 putative glycosyl tra 96.7 0.016 3.5E-07 54.5 10.6 85 326-418 199-307 (335)
132 cd03789 GT1_LPS_heptosyltransf 96.7 0.16 3.6E-06 46.7 17.2 101 6-133 1-104 (279)
133 PRK10422 lipopolysaccharide co 96.6 0.2 4.2E-06 48.0 17.8 109 1-134 1-113 (352)
134 TIGR02201 heptsyl_trn_III lipo 96.5 0.18 4E-06 48.0 16.9 105 6-134 1-108 (344)
135 PRK10916 ADP-heptose:LPS hepto 96.5 0.54 1.2E-05 44.9 19.8 103 5-134 1-106 (348)
136 COG0859 RfaF ADP-heptose:LPS h 96.4 0.39 8.5E-06 45.6 17.9 106 4-135 1-108 (334)
137 COG3914 Spy Predicted O-linked 96.3 0.054 1.2E-06 53.1 11.4 104 269-380 428-543 (620)
138 PF13524 Glyco_trans_1_2: Glyc 96.2 0.053 1.1E-06 40.4 9.1 82 353-450 9-91 (92)
139 PRK14098 glycogen synthase; Pr 96.2 0.06 1.3E-06 53.9 11.9 131 271-416 307-449 (489)
140 PF06258 Mito_fiss_Elm1: Mitoc 96.1 0.54 1.2E-05 43.9 16.8 57 337-397 221-282 (311)
141 TIGR02195 heptsyl_trn_II lipop 96.1 0.58 1.3E-05 44.4 17.5 102 6-134 1-105 (334)
142 KOG4626 O-linked N-acetylgluco 96.0 0.095 2.1E-06 51.8 11.7 172 269-457 757-945 (966)
143 PF13579 Glyco_trans_4_4: Glyc 96.0 0.0093 2E-07 49.4 4.5 97 20-137 6-104 (160)
144 PF12000 Glyco_trans_4_3: Gkyc 96.0 0.057 1.2E-06 45.2 8.7 95 30-137 1-96 (171)
145 PHA01630 putative group 1 glyc 95.5 0.5 1.1E-05 44.7 14.4 108 334-453 196-328 (331)
146 KOG2941 Beta-1,4-mannosyltrans 95.3 2.4 5.3E-05 39.2 28.7 125 2-141 10-141 (444)
147 COG3660 Predicted nucleoside-d 94.8 2.6 5.6E-05 37.5 15.0 95 291-396 189-298 (329)
148 TIGR02400 trehalose_OtsA alpha 93.7 0.25 5.3E-06 49.0 7.8 101 334-454 342-455 (456)
149 PF13439 Glyco_transf_4: Glyco 93.4 0.29 6.2E-06 41.0 6.9 101 14-140 11-112 (177)
150 cd03788 GT1_TPS Trehalose-6-Ph 93.3 0.75 1.6E-05 45.8 10.5 102 332-453 345-459 (460)
151 PF08660 Alg14: Oligosaccharid 93.2 0.83 1.8E-05 38.4 9.1 114 10-137 3-129 (170)
152 TIGR03713 acc_sec_asp1 accesso 92.0 0.29 6.3E-06 49.2 5.7 88 328-432 409-506 (519)
153 PRK13932 stationary phase surv 91.3 1.9 4.1E-05 38.8 9.4 115 2-137 3-133 (257)
154 PLN02939 transferase, transfer 91.0 6.6 0.00014 42.2 14.3 91 327-425 836-942 (977)
155 COG0438 RfaG Glycosyltransfera 90.6 14 0.0003 34.2 15.7 88 328-427 257-351 (381)
156 smart00851 MGS MGS-like domain 90.1 3.4 7.3E-05 30.5 8.6 79 21-133 2-89 (90)
157 PF02142 MGS: MGS-like domain 89.9 0.68 1.5E-05 34.7 4.7 83 21-133 2-94 (95)
158 cd02067 B12-binding B12 bindin 89.7 5.4 0.00012 31.2 10.0 106 6-134 1-107 (119)
159 TIGR02919 accessory Sec system 89.7 0.95 2.1E-05 44.5 6.7 92 328-431 328-425 (438)
160 PRK02261 methylaspartate mutas 89.6 1.2 2.6E-05 35.9 6.2 49 2-50 1-49 (137)
161 TIGR02398 gluc_glyc_Psyn gluco 88.8 8.1 0.00018 38.5 12.5 111 330-460 364-487 (487)
162 PRK10964 ADP-heptose:LPS hepto 88.5 3.2 6.9E-05 39.1 9.3 103 5-128 1-106 (322)
163 cd02070 corrinoid_protein_B12- 88.2 4.4 9.6E-05 35.2 9.3 104 4-134 82-189 (201)
164 cd01423 MGS_CPS_I_III Methylgl 87.5 6.3 0.00014 30.6 8.9 87 17-134 11-106 (116)
165 PF02374 ArsA_ATPase: Anion-tr 87.3 1.8 4E-05 40.3 6.7 40 6-45 2-42 (305)
166 PRK08305 spoVFB dipicolinate s 87.1 1.2 2.6E-05 38.2 4.9 46 2-47 3-48 (196)
167 PRK05986 cob(I)alamin adenolsy 87.0 18 0.0004 30.9 12.6 100 3-119 21-126 (191)
168 KOG1387 Glycosyltransferase [C 86.6 28 0.00061 32.6 19.8 355 14-435 56-446 (465)
169 PLN03063 alpha,alpha-trehalose 86.6 2.4 5.1E-05 45.3 7.8 98 340-456 371-478 (797)
170 TIGR02370 pyl_corrinoid methyl 86.0 5.5 0.00012 34.4 8.6 107 4-134 84-191 (197)
171 TIGR00715 precor6x_red precorr 85.9 4.6 9.9E-05 36.5 8.2 91 6-136 2-99 (256)
172 TIGR00708 cobA cob(I)alamin ad 85.8 20 0.00042 30.2 11.3 98 4-119 5-108 (173)
173 cd01424 MGS_CPS_II Methylglyox 85.7 9.7 0.00021 29.2 9.0 84 16-134 10-100 (110)
174 PF02951 GSH-S_N: Prokaryotic 85.6 1.6 3.5E-05 34.0 4.5 39 5-43 1-42 (119)
175 PF02441 Flavoprotein: Flavopr 85.5 1.5 3.3E-05 34.9 4.5 45 5-50 1-45 (129)
176 cd01425 RPS2 Ribosomal protein 85.1 2.6 5.6E-05 36.3 6.1 114 18-140 42-161 (193)
177 COG0003 ArsA Predicted ATPase 85.0 12 0.00027 35.0 10.8 41 5-45 2-43 (322)
178 cd00561 CobA_CobO_BtuR ATP:cor 84.7 21 0.00047 29.5 12.2 98 5-119 3-106 (159)
179 PRK06849 hypothetical protein; 84.3 7.7 0.00017 37.7 9.7 39 1-43 1-39 (389)
180 PRK08057 cobalt-precorrin-6x r 84.0 4.4 9.6E-05 36.4 7.2 93 4-137 2-100 (248)
181 PRK13933 stationary phase surv 83.5 18 0.00038 32.6 10.7 112 6-137 2-129 (253)
182 PF06925 MGDG_synth: Monogalac 83.5 1.5 3.3E-05 36.9 3.9 43 90-138 77-125 (169)
183 PF05159 Capsule_synth: Capsul 83.3 4.1 8.9E-05 37.2 7.0 77 290-373 145-225 (269)
184 PRK13934 stationary phase surv 83.2 19 0.00041 32.7 10.7 111 6-137 2-127 (266)
185 PRK12342 hypothetical protein; 82.9 10 0.00023 34.1 9.1 95 21-138 40-145 (254)
186 TIGR00087 surE 5'/3'-nucleotid 82.8 9 0.0002 34.3 8.6 111 6-137 2-128 (244)
187 PRK13935 stationary phase surv 82.4 14 0.0003 33.3 9.5 41 6-48 2-42 (253)
188 PRK03359 putative electron tra 82.2 18 0.00039 32.7 10.3 99 17-138 33-148 (256)
189 PRK13789 phosphoribosylamine-- 81.9 4.4 9.6E-05 39.8 7.0 39 1-44 1-39 (426)
190 PRK05647 purN phosphoribosylgl 81.3 20 0.00043 31.1 10.0 102 5-137 2-110 (200)
191 COG0052 RpsB Ribosomal protein 81.2 7.5 0.00016 34.4 7.2 34 107-140 155-190 (252)
192 PRK14501 putative bifunctional 81.1 3.9 8.4E-05 43.4 6.7 109 332-456 346-463 (726)
193 COG2894 MinD Septum formation 81.0 11 0.00023 33.0 7.8 102 5-116 2-121 (272)
194 PF00551 Formyl_trans_N: Formy 80.8 11 0.00025 32.0 8.3 107 5-138 1-110 (181)
195 cd03793 GT1_Glycogen_synthase_ 80.6 4.8 0.0001 40.7 6.6 78 339-419 469-553 (590)
196 TIGR01470 cysG_Nterm siroheme 80.6 29 0.00063 30.2 10.9 146 270-435 10-165 (205)
197 COG4370 Uncharacterized protei 80.6 7.4 0.00016 35.5 7.1 92 334-434 301-396 (412)
198 PF00448 SRP54: SRP54-type pro 80.5 15 0.00033 31.7 9.1 90 6-117 3-92 (196)
199 COG0496 SurE Predicted acid ph 80.4 5.8 0.00013 35.4 6.4 111 6-139 2-127 (252)
200 COG1618 Predicted nucleotide k 79.6 6.1 0.00013 32.6 5.7 56 4-68 5-60 (179)
201 PF02571 CbiJ: Precorrin-6x re 79.5 5.2 0.00011 36.0 6.0 95 5-137 1-101 (249)
202 cd01974 Nitrogenase_MoFe_beta 79.4 17 0.00038 35.8 10.2 27 107-136 376-402 (435)
203 PF04413 Glycos_transf_N: 3-De 79.4 9.7 0.00021 32.6 7.4 99 7-137 23-126 (186)
204 PRK06988 putative formyltransf 79.2 18 0.0004 33.8 9.8 34 4-42 2-35 (312)
205 PF01012 ETF: Electron transfe 78.9 8.6 0.00019 32.0 6.9 109 7-137 2-122 (164)
206 KOG0853 Glycosyltransferase [C 78.9 4.7 0.0001 39.8 5.9 64 358-429 381-444 (495)
207 PRK12311 rpsB 30S ribosomal pr 77.8 6.3 0.00014 36.8 6.1 34 107-140 151-186 (326)
208 PRK10964 ADP-heptose:LPS hepto 77.4 7.9 0.00017 36.4 7.0 132 270-417 178-321 (322)
209 TIGR00460 fmt methionyl-tRNA f 77.2 25 0.00054 33.0 10.1 32 5-41 1-32 (313)
210 PF06506 PrpR_N: Propionate ca 77.1 26 0.00056 29.6 9.4 110 16-141 17-155 (176)
211 cd00550 ArsA_ATPase Oxyanion-t 76.2 16 0.00034 33.1 8.2 36 8-43 4-39 (254)
212 TIGR02015 BchY chlorophyllide 76.1 27 0.00059 34.3 10.4 90 6-136 287-380 (422)
213 PF02310 B12-binding: B12 bind 75.8 11 0.00025 29.2 6.5 42 6-47 2-43 (121)
214 cd00532 MGS-like MGS-like doma 75.7 28 0.00061 26.8 8.5 85 17-134 10-104 (112)
215 PRK00346 surE 5'(3')-nucleotid 75.6 44 0.00096 30.1 10.7 110 6-137 2-124 (250)
216 PRK05973 replicative DNA helic 74.7 37 0.0008 30.3 9.9 45 6-50 66-110 (237)
217 cd01980 Chlide_reductase_Y Chl 74.7 31 0.00068 33.8 10.5 28 107-137 349-376 (416)
218 PF12146 Hydrolase_4: Putative 74.2 6.5 0.00014 28.2 4.2 35 5-39 16-50 (79)
219 cd02071 MM_CoA_mut_B12_BD meth 74.2 40 0.00087 26.4 10.9 42 6-47 1-42 (122)
220 cd01421 IMPCH Inosine monophos 74.2 21 0.00046 30.3 7.8 39 18-67 10-48 (187)
221 TIGR01425 SRP54_euk signal rec 74.1 20 0.00042 35.2 8.6 40 6-45 102-141 (429)
222 TIGR00347 bioD dethiobiotin sy 73.9 16 0.00034 30.4 7.3 27 12-38 6-32 (166)
223 PRK05632 phosphate acetyltrans 73.6 52 0.0011 34.7 12.3 103 6-140 4-117 (684)
224 PRK06718 precorrin-2 dehydroge 73.4 61 0.0013 28.1 11.4 147 269-435 10-165 (202)
225 PRK10867 signal recognition pa 73.3 24 0.00052 34.7 9.1 42 6-47 102-144 (433)
226 PRK04885 ppnK inorganic polyph 73.3 5 0.00011 36.5 4.2 52 348-419 37-94 (265)
227 COG2109 BtuR ATP:corrinoid ade 73.3 58 0.0013 27.8 10.4 99 6-119 30-133 (198)
228 cd02069 methionine_synthase_B1 73.2 33 0.00072 30.1 9.2 47 4-50 88-134 (213)
229 COG2910 Putative NADH-flavin r 72.7 5 0.00011 33.8 3.6 36 5-44 1-36 (211)
230 PF07429 Glyco_transf_56: 4-al 72.3 54 0.0012 30.9 10.5 82 328-417 245-332 (360)
231 PRK13931 stationary phase surv 72.3 20 0.00044 32.4 7.8 98 21-137 16-129 (261)
232 cd01985 ETF The electron trans 72.0 48 0.001 28.0 9.9 30 107-136 90-122 (181)
233 PRK00090 bioD dithiobiotin syn 71.9 38 0.00083 29.7 9.6 28 12-39 8-35 (222)
234 COG1484 DnaC DNA replication p 71.9 8.1 0.00017 35.0 5.2 47 4-50 105-151 (254)
235 PF04464 Glyphos_transf: CDP-G 71.3 6.4 0.00014 37.9 4.8 107 327-446 251-363 (369)
236 PF03808 Glyco_tran_WecB: Glyc 71.3 61 0.0013 27.2 11.2 96 21-141 37-137 (172)
237 PF06506 PrpR_N: Propionate ca 71.3 5.2 0.00011 33.9 3.6 70 344-418 32-124 (176)
238 PF00731 AIRC: AIR carboxylase 71.0 29 0.00063 28.4 7.6 139 272-434 2-148 (150)
239 cd01965 Nitrogenase_MoFe_beta_ 71.0 13 0.00027 36.7 6.8 36 95-136 361-396 (428)
240 PRK07313 phosphopantothenoylcy 71.0 6.4 0.00014 33.5 4.1 43 5-48 2-44 (182)
241 CHL00067 rps2 ribosomal protei 70.4 11 0.00023 33.6 5.5 35 107-141 160-196 (230)
242 PF04127 DFP: DNA / pantothena 70.1 4.9 0.00011 34.3 3.2 39 4-42 3-53 (185)
243 PRK02797 4-alpha-L-fucosyltran 69.8 55 0.0012 30.4 9.9 79 328-414 206-290 (322)
244 cd01018 ZntC Metal binding pro 69.7 82 0.0018 28.7 11.4 47 91-140 203-251 (266)
245 TIGR00064 ftsY signal recognit 69.1 51 0.0011 30.2 9.9 38 6-43 74-111 (272)
246 PRK01077 cobyrinic acid a,c-di 68.9 48 0.001 32.9 10.4 105 5-139 4-124 (451)
247 cd01715 ETF_alpha The electron 68.9 67 0.0015 26.8 10.4 31 107-137 82-115 (168)
248 PF01975 SurE: Survival protei 68.9 9.7 0.00021 32.9 4.8 117 5-139 1-135 (196)
249 PF09314 DUF1972: Domain of un 68.6 47 0.001 28.4 8.7 55 6-67 3-62 (185)
250 COG0552 FtsY Signal recognitio 68.4 57 0.0012 30.6 9.8 45 5-49 140-184 (340)
251 PRK06029 3-octaprenyl-4-hydrox 68.4 10 0.00022 32.3 4.8 45 5-50 2-47 (185)
252 KOG0780 Signal recognition par 68.1 47 0.001 31.8 9.2 43 4-46 101-143 (483)
253 TIGR00959 ffh signal recogniti 68.0 42 0.00091 33.0 9.5 41 6-46 101-142 (428)
254 COG0541 Ffh Signal recognition 67.8 23 0.00049 34.4 7.3 46 4-49 100-145 (451)
255 PF06792 UPF0261: Uncharacteri 67.8 74 0.0016 30.8 10.7 96 268-377 183-281 (403)
256 PF07015 VirC1: VirC1 protein; 67.4 90 0.002 27.7 11.2 44 6-49 3-47 (231)
257 PRK01175 phosphoribosylformylg 67.1 72 0.0016 29.0 10.2 57 4-71 3-59 (261)
258 PRK11519 tyrosine kinase; Prov 67.1 1.4E+02 0.0031 31.8 14.0 117 4-136 525-667 (719)
259 PF02572 CobA_CobO_BtuR: ATP:c 67.0 23 0.0005 29.8 6.5 99 4-119 3-107 (172)
260 PRK05234 mgsA methylglyoxal sy 67.0 67 0.0015 26.0 10.4 99 2-135 2-112 (142)
261 PLN03064 alpha,alpha-trehalose 66.6 82 0.0018 34.4 11.9 98 340-456 455-562 (934)
262 COG2185 Sbm Methylmalonyl-CoA 65.9 18 0.0004 29.2 5.4 45 3-47 11-55 (143)
263 PHA02542 41 41 helicase; Provi 65.8 36 0.00077 34.0 8.7 39 7-45 193-231 (473)
264 TIGR02852 spore_dpaB dipicolin 65.5 9 0.00019 32.7 3.9 39 6-44 2-40 (187)
265 cd03466 Nitrogenase_NifN_2 Nit 65.4 51 0.0011 32.5 9.7 27 107-136 371-397 (429)
266 cd01121 Sms Sms (bacterial rad 64.9 97 0.0021 29.9 11.2 41 7-47 85-125 (372)
267 PRK14077 pnk inorganic polypho 64.4 9.1 0.0002 35.3 4.0 55 343-419 63-121 (287)
268 PRK00784 cobyric acid synthase 64.4 67 0.0015 32.3 10.5 35 6-40 4-39 (488)
269 PRK05920 aromatic acid decarbo 64.1 12 0.00027 32.4 4.5 45 4-49 3-47 (204)
270 TIGR01283 nifE nitrogenase mol 64.0 87 0.0019 31.2 11.1 26 107-135 394-419 (456)
271 TIGR00355 purH phosphoribosyla 63.7 32 0.00069 34.2 7.6 87 18-120 10-102 (511)
272 KOG0832 Mitochondrial/chloropl 63.7 7.5 0.00016 33.8 3.0 113 14-140 90-207 (251)
273 PRK07206 hypothetical protein; 63.1 32 0.0007 33.7 7.9 34 5-43 3-36 (416)
274 PRK02155 ppnK NAD(+)/NADH kina 62.8 8.9 0.00019 35.4 3.7 54 344-419 63-120 (291)
275 PRK06249 2-dehydropantoate 2-r 62.7 20 0.00043 33.6 6.1 42 3-50 4-45 (313)
276 PRK08229 2-dehydropantoate 2-r 62.4 12 0.00027 35.5 4.7 41 4-49 2-42 (341)
277 PF01075 Glyco_transf_9: Glyco 62.3 15 0.00031 33.0 5.0 97 269-372 104-208 (247)
278 PRK08506 replicative DNA helic 62.2 42 0.00091 33.6 8.5 42 7-48 195-236 (472)
279 COG2085 Predicted dinucleotide 61.8 76 0.0016 27.6 8.7 35 5-44 2-36 (211)
280 PRK11823 DNA repair protein Ra 61.7 89 0.0019 31.0 10.6 43 6-48 82-124 (446)
281 COG0859 RfaF ADP-heptose:LPS h 61.7 43 0.00094 31.7 8.2 100 5-139 176-280 (334)
282 PTZ00445 p36-lilke protein; Pr 61.6 64 0.0014 28.1 8.2 112 16-137 74-206 (219)
283 TIGR00639 PurN phosphoribosylg 61.5 1E+02 0.0023 26.4 10.6 101 5-137 1-109 (190)
284 TIGR00421 ubiX_pad polyprenyl 61.5 11 0.00023 32.2 3.6 43 6-49 1-43 (181)
285 PRK01231 ppnK inorganic polyph 61.4 31 0.00066 32.0 6.9 52 348-419 64-119 (295)
286 PRK11889 flhF flagellar biosyn 61.2 44 0.00095 32.4 7.9 40 5-44 242-281 (436)
287 PF01210 NAD_Gly3P_dh_N: NAD-d 61.2 6 0.00013 32.7 2.1 40 6-50 1-41 (157)
288 COG3640 CooC CO dehydrogenase 61.1 77 0.0017 28.2 8.7 46 5-50 1-47 (255)
289 PRK02649 ppnK inorganic polyph 61.0 9.5 0.00021 35.5 3.5 53 347-419 69-125 (305)
290 TIGR03029 EpsG chain length de 60.8 1.3E+02 0.0029 27.3 12.2 38 4-41 102-141 (274)
291 TIGR03600 phage_DnaB phage rep 60.8 52 0.0011 32.4 8.9 41 7-47 197-238 (421)
292 cd00984 DnaB_C DnaB helicase C 60.8 58 0.0013 29.0 8.6 43 7-49 16-59 (242)
293 TIGR01011 rpsB_bact ribosomal 60.7 26 0.00056 31.0 6.0 34 107-140 154-189 (225)
294 PRK05579 bifunctional phosphop 60.7 17 0.00037 35.4 5.3 48 1-49 3-50 (399)
295 TIGR02329 propionate_PrpR prop 60.7 72 0.0016 32.4 9.9 108 16-138 37-172 (526)
296 PRK13011 formyltetrahydrofolat 60.6 1.1E+02 0.0023 28.4 10.2 105 3-137 88-195 (286)
297 cd07039 TPP_PYR_POX Pyrimidine 60.1 54 0.0012 27.3 7.6 26 348-373 65-96 (164)
298 PRK14098 glycogen synthase; Pr 60.0 14 0.00031 37.1 4.9 40 3-42 4-49 (489)
299 PF08323 Glyco_transf_5: Starc 60.0 13 0.00029 33.3 4.3 37 6-42 1-43 (245)
300 COG1703 ArgK Putative periplas 60.0 1.5E+02 0.0032 27.6 11.2 112 6-135 53-172 (323)
301 PRK07414 cob(I)yrinic acid a,c 59.9 1.1E+02 0.0023 26.0 11.0 102 2-119 19-126 (178)
302 PRK05299 rpsB 30S ribosomal pr 59.9 27 0.00057 31.7 6.0 34 107-140 156-191 (258)
303 PF02056 Glyco_hydro_4: Family 59.9 1.1E+02 0.0024 26.1 11.1 112 18-143 41-174 (183)
304 PRK14106 murD UDP-N-acetylmura 59.8 77 0.0017 31.4 10.1 34 4-42 5-38 (450)
305 PRK14478 nitrogenase molybdenu 59.8 95 0.0021 31.1 10.6 25 107-134 392-416 (475)
306 TIGR02655 circ_KaiC circadian 59.8 1.5E+02 0.0033 29.8 12.1 47 4-50 263-309 (484)
307 PRK00771 signal recognition pa 59.7 61 0.0013 32.0 8.9 41 5-45 96-136 (437)
308 PRK10416 signal recognition pa 59.6 1E+02 0.0023 28.9 10.2 39 6-44 116-154 (318)
309 PRK05595 replicative DNA helic 59.5 40 0.00087 33.4 7.9 41 7-47 204-245 (444)
310 cd01017 AdcA Metal binding pro 59.5 90 0.0019 28.7 9.7 44 92-138 207-252 (282)
311 TIGR03880 KaiC_arch_3 KaiC dom 59.5 47 0.001 29.2 7.7 45 6-50 18-62 (224)
312 PRK08006 replicative DNA helic 59.1 66 0.0014 32.2 9.2 41 7-47 227-268 (471)
313 PRK11199 tyrA bifunctional cho 58.7 1E+02 0.0022 29.8 10.2 34 4-42 98-132 (374)
314 PRK06027 purU formyltetrahydro 58.5 1.1E+02 0.0025 28.2 10.1 103 3-135 88-193 (286)
315 PRK01911 ppnK inorganic polyph 58.2 13 0.00029 34.3 3.9 54 344-419 64-121 (292)
316 COG0287 TyrA Prephenate dehydr 57.5 1.1E+02 0.0024 28.1 9.8 42 4-50 3-44 (279)
317 TIGR01285 nifN nitrogenase mol 57.2 77 0.0017 31.3 9.3 88 4-136 311-398 (432)
318 PRK14974 cell division protein 57.1 1.2E+02 0.0026 28.8 10.1 40 5-44 141-180 (336)
319 TIGR01007 eps_fam capsular exo 57.0 1.3E+02 0.0028 25.9 12.5 40 4-43 16-57 (204)
320 TIGR01286 nifK nitrogenase mol 56.8 85 0.0018 31.8 9.6 27 107-136 436-462 (515)
321 PRK04539 ppnK inorganic polyph 56.8 14 0.00031 34.2 3.9 54 344-419 68-125 (296)
322 PRK08760 replicative DNA helic 56.5 49 0.0011 33.1 7.9 41 7-47 232-273 (476)
323 PF01297 TroA: Periplasmic sol 56.4 55 0.0012 29.5 7.7 81 32-138 149-231 (256)
324 cd03115 SRP The signal recogni 56.4 1.2E+02 0.0025 25.3 9.4 39 7-45 3-41 (173)
325 PRK00005 fmt methionyl-tRNA fo 56.0 1.3E+02 0.0027 28.2 10.1 32 5-41 1-32 (309)
326 PRK02231 ppnK inorganic polyph 55.8 10 0.00022 34.6 2.8 58 339-418 37-98 (272)
327 TIGR03499 FlhF flagellar biosy 55.7 1.2E+02 0.0026 27.9 9.9 39 6-44 196-236 (282)
328 PRK12921 2-dehydropantoate 2-r 55.5 23 0.0005 32.9 5.3 41 5-50 1-41 (305)
329 PRK07313 phosphopantothenoylcy 55.4 1.3E+02 0.0028 25.6 9.5 52 365-417 112-179 (182)
330 TIGR02113 coaC_strep phosphopa 54.7 18 0.00038 30.7 3.8 42 6-48 2-43 (177)
331 TIGR03878 thermo_KaiC_2 KaiC d 54.6 75 0.0016 28.8 8.2 39 6-44 38-76 (259)
332 PRK03378 ppnK inorganic polyph 54.6 15 0.00032 34.0 3.6 53 347-419 64-120 (292)
333 TIGR01501 MthylAspMutase methy 54.6 43 0.00092 26.9 5.7 46 5-50 2-47 (134)
334 PF02606 LpxK: Tetraacyldisacc 54.3 42 0.00091 31.7 6.6 34 10-43 43-76 (326)
335 COG2861 Uncharacterized protei 54.1 1.1E+02 0.0024 27.1 8.5 39 91-134 137-178 (250)
336 PRK00881 purH bifunctional pho 54.0 64 0.0014 32.3 7.9 39 18-67 14-52 (513)
337 PF13419 HAD_2: Haloacid dehal 53.7 50 0.0011 27.1 6.7 91 21-135 82-176 (176)
338 PF07355 GRDB: Glycine/sarcosi 53.7 27 0.00059 32.8 5.1 42 91-135 66-117 (349)
339 COG0771 MurD UDP-N-acetylmuram 53.6 1.1E+02 0.0024 30.3 9.5 36 4-44 7-42 (448)
340 cd03114 ArgK-like The function 53.6 1.2E+02 0.0026 24.6 10.3 36 7-42 2-37 (148)
341 PRK06731 flhF flagellar biosyn 53.2 1.5E+02 0.0032 27.1 9.8 40 5-44 76-115 (270)
342 PLN02891 IMP cyclohydrolase 53.1 65 0.0014 32.2 7.8 41 16-67 30-70 (547)
343 PRK03372 ppnK inorganic polyph 52.9 17 0.00038 33.8 3.8 53 347-419 73-129 (306)
344 PRK06321 replicative DNA helic 52.9 87 0.0019 31.3 8.9 42 7-48 229-271 (472)
345 PRK00843 egsA NAD(P)-dependent 52.7 1.3E+02 0.0029 28.6 9.9 112 1-140 1-122 (350)
346 TIGR02700 flavo_MJ0208 archaeo 52.3 25 0.00053 31.4 4.6 44 6-49 1-46 (234)
347 PF09001 DUF1890: Domain of un 52.2 20 0.00043 28.5 3.4 35 16-50 11-45 (139)
348 PRK09165 replicative DNA helic 52.1 66 0.0014 32.5 8.0 43 7-49 220-277 (497)
349 TIGR02699 archaeo_AfpA archaeo 51.8 26 0.00055 29.6 4.3 42 6-48 1-44 (174)
350 PRK01185 ppnK inorganic polyph 51.8 19 0.00041 32.9 3.8 53 347-419 53-106 (271)
351 PF02558 ApbA: Ketopantoate re 51.6 27 0.00058 28.4 4.5 35 23-66 12-46 (151)
352 cd07038 TPP_PYR_PDC_IPDC_like 51.5 62 0.0013 26.8 6.6 24 350-373 63-92 (162)
353 PRK13982 bifunctional SbtC-lik 51.0 23 0.0005 35.2 4.5 40 4-43 256-307 (475)
354 PF01075 Glyco_transf_9: Glyco 50.5 67 0.0015 28.6 7.3 100 4-139 105-212 (247)
355 cd01124 KaiC KaiC is a circadi 50.3 48 0.001 28.0 6.0 43 7-49 2-44 (187)
356 PRK03501 ppnK inorganic polyph 50.2 23 0.00049 32.2 4.0 53 348-419 41-98 (264)
357 PRK06732 phosphopantothenate-- 50.2 26 0.00057 31.1 4.4 36 6-41 2-49 (229)
358 CHL00175 minD septum-site dete 49.8 2.1E+02 0.0044 26.2 12.6 39 4-42 14-54 (281)
359 PRK10916 ADP-heptose:LPS hepto 49.5 1.1E+02 0.0023 29.1 8.8 88 20-137 201-288 (348)
360 PRK09620 hypothetical protein; 49.4 36 0.00077 30.2 5.1 39 3-41 2-52 (229)
361 PRK12726 flagellar biosynthesi 49.4 1.9E+02 0.0041 28.0 10.0 41 5-45 206-247 (407)
362 PLN02470 acetolactate synthase 49.2 55 0.0012 33.8 7.2 80 288-373 16-109 (585)
363 PRK06522 2-dehydropantoate 2-r 49.0 27 0.00058 32.4 4.6 32 5-41 1-32 (304)
364 PF01695 IstB_IS21: IstB-like 49.0 27 0.00059 29.5 4.2 45 4-48 47-91 (178)
365 TIGR00521 coaBC_dfp phosphopan 49.0 29 0.00064 33.6 4.8 46 4-50 3-48 (390)
366 TIGR00416 sms DNA repair prote 48.9 1.5E+02 0.0032 29.5 9.8 43 6-48 96-138 (454)
367 PHA02754 hypothetical protein; 48.9 28 0.0006 22.8 3.0 26 410-435 5-30 (67)
368 cd02037 MRP-like MRP (Multiple 48.7 67 0.0015 26.7 6.6 33 11-43 7-39 (169)
369 PLN02929 NADH kinase 48.6 21 0.00046 33.0 3.6 65 347-419 65-138 (301)
370 PRK14075 pnk inorganic polypho 48.6 23 0.0005 32.1 3.9 53 347-419 42-95 (256)
371 COG1066 Sms Predicted ATP-depe 48.4 1.1E+02 0.0024 29.7 8.3 104 5-137 94-218 (456)
372 PRK06395 phosphoribosylamine-- 48.2 88 0.0019 30.9 8.1 33 4-41 2-34 (435)
373 COG0240 GpsA Glycerol-3-phosph 47.9 41 0.00089 31.5 5.3 34 5-43 2-35 (329)
374 PRK08840 replicative DNA helic 47.6 1.3E+02 0.0028 30.0 9.2 41 7-47 220-261 (464)
375 TIGR00379 cobB cobyrinic acid 47.5 2E+02 0.0043 28.6 10.5 104 7-140 2-121 (449)
376 cd01141 TroA_d Periplasmic bin 47.4 30 0.00064 29.3 4.2 30 107-136 68-99 (186)
377 PLN02935 Bifunctional NADH kin 47.3 27 0.00058 34.7 4.2 53 347-419 263-319 (508)
378 PRK03708 ppnK inorganic polyph 47.0 22 0.00048 32.6 3.5 53 347-419 58-113 (277)
379 PRK10490 sensor protein KdpD; 46.9 89 0.0019 34.3 8.6 39 4-42 24-62 (895)
380 PRK12724 flagellar biosynthesi 46.8 88 0.0019 30.7 7.5 41 7-47 226-267 (432)
381 cd01968 Nitrogenase_NifE_I Nit 46.5 1.8E+02 0.004 28.4 10.1 26 107-135 355-380 (410)
382 COG2210 Peroxiredoxin family p 46.5 42 0.0009 26.8 4.4 41 9-49 8-48 (137)
383 PLN02939 transferase, transfer 46.4 38 0.00082 36.7 5.4 40 3-42 480-525 (977)
384 COG2874 FlaH Predicted ATPases 46.4 2.1E+02 0.0045 25.2 9.6 95 12-121 36-136 (235)
385 PRK13234 nifH nitrogenase redu 46.4 40 0.00087 31.3 5.2 43 1-43 1-43 (295)
386 PF13433 Peripla_BP_5: Peripla 46.4 2.1E+02 0.0046 27.4 9.9 126 6-138 41-227 (363)
387 PRK06719 precorrin-2 dehydroge 46.4 37 0.00081 28.0 4.5 34 4-42 13-46 (157)
388 KOG1509 Predicted nucleic acid 45.5 67 0.0015 27.4 5.7 77 30-114 7-83 (209)
389 PLN02331 phosphoribosylglycina 45.4 2.1E+02 0.0045 25.0 9.2 101 6-137 1-108 (207)
390 TIGR00665 DnaB replicative DNA 45.2 1.2E+02 0.0026 29.9 8.7 42 7-48 198-240 (434)
391 PRK05636 replicative DNA helic 45.2 51 0.0011 33.2 6.0 40 7-46 268-308 (505)
392 PRK07773 replicative DNA helic 45.0 1E+02 0.0022 33.8 8.6 43 7-49 220-263 (886)
393 PRK09841 cryptic autophosphory 44.9 4.2E+02 0.0091 28.3 14.3 40 4-43 530-571 (726)
394 COG0801 FolK 7,8-dihydro-6-hyd 44.9 45 0.00098 27.6 4.6 29 272-300 3-31 (160)
395 cd02065 B12-binding_like B12 b 44.8 55 0.0012 25.4 5.2 43 7-49 2-44 (125)
396 PRK05703 flhF flagellar biosyn 44.7 1.5E+02 0.0033 29.1 9.1 40 6-45 223-264 (424)
397 PRK08125 bifunctional UDP-gluc 44.6 2.1E+02 0.0046 30.1 10.8 33 107-139 74-107 (660)
398 KOG1053 Glutamate-gated NMDA-t 44.4 13 0.00028 39.1 1.7 77 58-138 686-762 (1258)
399 KOG0081 GTPase Rab27, small G 44.1 58 0.0013 26.7 4.9 48 94-141 109-167 (219)
400 COG1663 LpxK Tetraacyldisaccha 44.0 68 0.0015 30.1 6.1 34 10-43 55-88 (336)
401 TIGR01012 Sa_S2_E_A ribosomal 43.9 13 0.00028 32.0 1.3 34 107-140 107-142 (196)
402 TIGR02195 heptsyl_trn_II lipop 43.9 2.8E+02 0.0061 26.0 12.1 98 6-137 176-278 (334)
403 PRK14477 bifunctional nitrogen 43.8 1.5E+02 0.0033 32.6 9.7 28 107-137 388-415 (917)
404 PRK00207 sulfur transfer compl 43.7 59 0.0013 25.8 5.0 36 6-41 2-41 (128)
405 PF00318 Ribosomal_S2: Ribosom 43.7 86 0.0019 27.4 6.5 34 107-140 142-177 (211)
406 PRK14619 NAD(P)H-dependent gly 43.5 59 0.0013 30.3 5.9 35 3-42 3-37 (308)
407 TIGR00745 apbA_panE 2-dehydrop 43.4 28 0.00061 32.0 3.8 28 23-50 5-32 (293)
408 PF02702 KdpD: Osmosensitive K 43.4 39 0.00084 29.2 4.1 39 4-42 5-43 (211)
409 TIGR02201 heptsyl_trn_III lipo 43.3 2.9E+02 0.0063 26.1 10.9 85 20-137 201-287 (344)
410 PRK06067 flagellar accessory p 43.2 1.1E+02 0.0024 27.1 7.4 46 4-49 25-70 (234)
411 PRK07004 replicative DNA helic 43.2 1.4E+02 0.0031 29.7 8.7 41 7-47 216-257 (460)
412 PF02585 PIG-L: GlcNAc-PI de-N 43.1 1.1E+02 0.0023 24.0 6.6 21 21-41 14-34 (128)
413 PRK10422 lipopolysaccharide co 43.0 1.2E+02 0.0026 28.9 8.1 85 20-137 203-289 (352)
414 PRK04020 rps2P 30S ribosomal p 43.0 14 0.00029 32.1 1.4 34 107-140 113-148 (204)
415 TIGR00640 acid_CoA_mut_C methy 42.8 87 0.0019 25.0 5.9 43 3-45 1-43 (132)
416 PRK04328 hypothetical protein; 42.6 2.5E+02 0.0055 25.2 10.6 45 4-48 23-67 (249)
417 PRK09545 znuA high-affinity zi 42.2 2E+02 0.0043 26.9 9.1 45 91-138 238-284 (311)
418 TIGR00682 lpxK tetraacyldisacc 42.1 85 0.0018 29.4 6.6 35 10-44 36-70 (311)
419 cd07025 Peptidase_S66 LD-Carbo 42.1 33 0.0007 31.6 3.8 75 281-374 44-120 (282)
420 PRK14076 pnk inorganic polypho 42.0 26 0.00056 36.0 3.5 53 347-419 349-405 (569)
421 cd01019 ZnuA Zinc binding prot 41.8 2.2E+02 0.0048 26.2 9.3 45 91-138 214-260 (286)
422 PRK13982 bifunctional SbtC-lik 41.8 46 0.001 33.1 5.0 46 4-50 70-115 (475)
423 PF04695 Pex14_N: Peroxisomal 41.4 28 0.00061 28.0 2.9 50 405-457 2-51 (136)
424 cd01977 Nitrogenase_VFe_alpha 41.3 1.7E+02 0.0037 28.7 8.9 26 107-135 357-382 (415)
425 PRK04761 ppnK inorganic polyph 41.1 39 0.00084 30.4 4.0 25 348-372 27-55 (246)
426 TIGR01918 various_sel_PB selen 40.9 54 0.0012 31.7 5.1 42 92-136 63-114 (431)
427 PF00282 Pyridoxal_deC: Pyrido 40.8 36 0.00079 32.8 4.1 70 347-418 104-191 (373)
428 COG1698 Uncharacterized protei 40.8 1.1E+02 0.0024 22.3 5.3 47 406-455 16-69 (93)
429 TIGR01917 gly_red_sel_B glycin 40.7 55 0.0012 31.7 5.1 42 92-136 63-114 (431)
430 PF04244 DPRP: Deoxyribodipyri 40.4 39 0.00084 29.9 3.9 26 17-42 47-72 (224)
431 PRK06904 replicative DNA helic 40.4 1.6E+02 0.0036 29.4 8.7 42 7-48 224-266 (472)
432 PF06564 YhjQ: YhjQ protein; 40.3 2.8E+02 0.006 24.9 10.4 36 6-41 3-39 (243)
433 TIGR00750 lao LAO/AO transport 40.1 2.9E+02 0.0062 25.7 9.9 38 6-43 36-73 (300)
434 COG1893 ApbA Ketopantoate redu 39.9 61 0.0013 30.3 5.3 49 5-67 1-49 (307)
435 KOG2825 Putative arsenite-tran 39.4 2.1E+02 0.0046 25.8 8.0 110 4-116 18-150 (323)
436 KOG3339 Predicted glycosyltran 39.0 2.5E+02 0.0053 24.0 8.5 25 6-31 40-64 (211)
437 cd01422 MGS Methylglyoxal synt 38.9 1.8E+02 0.004 22.5 9.2 86 15-134 8-106 (115)
438 CHL00072 chlL photochlorophyll 38.9 59 0.0013 30.1 5.0 39 5-43 1-39 (290)
439 PF08433 KTI12: Chromatin asso 38.8 2E+02 0.0044 26.2 8.4 105 6-145 3-113 (270)
440 COG2120 Uncharacterized protei 38.7 54 0.0012 29.3 4.6 39 3-41 9-47 (237)
441 PLN02712 arogenate dehydrogena 38.6 2E+02 0.0044 30.2 9.4 36 3-43 368-403 (667)
442 PF13450 NAD_binding_8: NAD(P) 38.3 42 0.00092 23.0 3.1 23 21-43 8-30 (68)
443 cd03789 GT1_LPS_heptosyltransf 38.2 2.1E+02 0.0045 26.1 8.6 86 20-138 141-226 (279)
444 PRK09423 gldA glycerol dehydro 38.2 2.5E+02 0.0055 26.9 9.4 94 20-140 17-119 (366)
445 KOG1111 N-acetylglucosaminyltr 38.1 3.7E+02 0.008 25.8 18.9 45 326-372 250-301 (426)
446 cd01452 VWA_26S_proteasome_sub 37.8 2.2E+02 0.0048 24.3 7.9 64 5-69 108-175 (187)
447 PRK05748 replicative DNA helic 37.7 1.8E+02 0.0039 28.9 8.6 42 7-48 206-248 (448)
448 COG0300 DltE Short-chain dehyd 37.6 2.2E+02 0.0048 25.9 8.3 35 5-42 6-40 (265)
449 PF05693 Glycogen_syn: Glycoge 37.6 41 0.00088 34.3 3.9 38 109-146 142-182 (633)
450 PRK05784 phosphoribosylamine-- 37.4 1.3E+02 0.0029 30.2 7.6 34 5-43 1-36 (486)
451 COG0665 DadA Glycine/D-amino a 37.3 42 0.00091 32.3 4.1 38 1-43 1-38 (387)
452 PRK06835 DNA replication prote 37.3 59 0.0013 30.7 4.8 45 5-49 184-228 (329)
453 PRK14618 NAD(P)H-dependent gly 37.2 50 0.0011 31.2 4.4 37 1-42 1-37 (328)
454 PF10093 DUF2331: Uncharacteri 36.9 38 0.00082 32.4 3.4 83 279-370 188-286 (374)
455 KOG1250 Threonine/serine dehyd 36.8 76 0.0016 30.5 5.2 58 355-420 252-318 (457)
456 PF10083 DUF2321: Uncharacteri 36.7 63 0.0014 26.4 4.1 71 371-452 77-148 (158)
457 COG1748 LYS9 Saccharopine dehy 36.5 2.8E+02 0.0061 26.9 9.2 42 4-50 1-44 (389)
458 TIGR03877 thermo_KaiC_1 KaiC d 36.5 3.1E+02 0.0066 24.3 10.3 46 4-49 21-66 (237)
459 PF05225 HTH_psq: helix-turn-h 36.3 50 0.0011 20.6 2.8 24 404-427 1-25 (45)
460 KOG2380 Prephenate dehydrogena 36.0 41 0.00088 31.5 3.3 43 3-50 51-93 (480)
461 PF10649 DUF2478: Protein of u 35.8 2.6E+02 0.0055 23.2 8.2 111 9-139 3-133 (159)
462 COG4081 Uncharacterized protei 35.7 72 0.0016 25.1 4.1 35 8-42 7-42 (148)
463 cd08783 Death_MALT1 Death doma 35.6 1.7E+02 0.0038 21.7 5.8 71 377-460 21-91 (97)
464 COG0143 MetG Methionyl-tRNA sy 35.4 75 0.0016 32.4 5.4 40 4-43 4-53 (558)
465 PF00070 Pyr_redox: Pyridine n 35.3 60 0.0013 22.9 3.6 23 20-42 10-32 (80)
466 TIGR01281 DPOR_bchL light-inde 35.3 66 0.0014 29.2 4.8 36 6-41 2-37 (268)
467 PLN02240 UDP-glucose 4-epimera 35.3 64 0.0014 30.6 4.9 34 3-40 4-37 (352)
468 COG1763 MobB Molybdopterin-gua 35.2 84 0.0018 26.1 4.8 39 5-43 2-41 (161)
469 cd06533 Glyco_transf_WecG_TagA 35.2 2.7E+02 0.0058 23.3 10.6 90 21-134 35-129 (171)
470 PRK06180 short chain dehydroge 35.1 73 0.0016 29.0 5.1 34 6-42 5-38 (277)
471 COG0452 Dfp Phosphopantothenoy 35.1 56 0.0012 31.7 4.4 47 3-50 3-49 (392)
472 cd02034 CooC The accessory pro 35.0 89 0.0019 24.2 4.8 37 6-42 1-37 (116)
473 PLN02285 methionyl-tRNA formyl 35.0 3.4E+02 0.0073 25.8 9.5 33 107-139 92-125 (334)
474 PRK13604 luxD acyl transferase 35.0 85 0.0018 29.3 5.3 35 5-39 37-71 (307)
475 cd02032 Bchl_like This family 34.9 66 0.0014 29.2 4.7 37 5-41 1-37 (267)
476 PRK07710 acetolactate synthase 34.7 1.7E+02 0.0037 30.2 8.1 27 347-373 79-111 (571)
477 PRK08939 primosomal protein Dn 34.6 77 0.0017 29.6 5.1 45 5-49 157-201 (306)
478 TIGR01005 eps_transp_fam exopo 34.6 6.1E+02 0.013 27.2 12.8 40 4-43 545-586 (754)
479 PF01372 Melittin: Melittin; 34.6 6 0.00013 20.7 -1.2 17 355-371 1-17 (26)
480 COG0467 RAD55 RecA-superfamily 34.1 1.2E+02 0.0027 27.3 6.3 47 4-50 23-69 (260)
481 TIGR02990 ectoine_eutA ectoine 34.1 3.4E+02 0.0075 24.2 9.3 99 18-135 105-212 (239)
482 PRK10586 putative oxidoreducta 34.1 3.9E+02 0.0083 25.7 9.9 95 19-141 20-122 (362)
483 PF01497 Peripla_BP_2: Peripla 34.0 64 0.0014 28.4 4.4 33 107-139 59-93 (238)
484 TIGR01509 HAD-SF-IA-v3 haloaci 34.0 2.7E+02 0.0059 23.0 8.5 25 21-45 90-114 (183)
485 cd08171 GlyDH-like2 Glycerol d 33.9 3.9E+02 0.0084 25.4 9.9 96 21-140 11-113 (345)
486 PRK09739 hypothetical protein; 33.8 1.1E+02 0.0024 26.3 5.7 38 3-40 2-42 (199)
487 PRK14569 D-alanyl-alanine synt 33.8 94 0.002 28.8 5.6 39 2-40 1-43 (296)
488 COG4088 Predicted nucleotide k 33.7 59 0.0013 28.3 3.7 105 6-142 3-113 (261)
489 COG0503 Apt Adenine/guanine ph 33.7 85 0.0019 26.6 4.8 37 96-135 44-82 (179)
490 PF04558 tRNA_synt_1c_R1: Glut 33.7 30 0.00064 28.9 1.9 24 386-417 108-131 (164)
491 PRK12723 flagellar biosynthesi 33.6 3.2E+02 0.007 26.5 9.2 44 5-48 175-222 (388)
492 PRK08818 prephenate dehydrogen 33.6 4.5E+02 0.0097 25.4 10.9 108 1-140 1-113 (370)
493 PF07991 IlvN: Acetohydroxy ac 33.4 67 0.0015 26.7 3.9 51 4-68 4-56 (165)
494 TIGR00173 menD 2-succinyl-5-en 33.2 1.8E+02 0.0039 28.7 7.8 26 347-372 64-95 (432)
495 PRK10427 putative PTS system f 33.1 1.1E+02 0.0023 23.8 4.8 39 4-42 2-43 (114)
496 PRK06718 precorrin-2 dehydroge 33.1 86 0.0019 27.2 4.9 35 4-43 10-44 (202)
497 PF03446 NAD_binding_2: NAD bi 33.0 50 0.0011 27.4 3.3 33 4-41 1-33 (163)
498 cd08551 Fe-ADH iron-containing 33.0 4.5E+02 0.0097 25.2 10.8 97 21-141 11-134 (370)
499 TIGR00877 purD phosphoribosyla 33.0 2.4E+02 0.0052 27.6 8.6 36 5-45 1-36 (423)
500 PRK05579 bifunctional phosphop 32.9 4.4E+02 0.0094 25.8 10.1 138 270-417 7-182 (399)
No 1
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=2.8e-69 Score=522.65 Aligned_cols=436 Identities=31% Similarity=0.635 Sum_probs=344.0
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcCCCCCCCCCCCCHH
Q 044266 1 MLRRPHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIPDGMEPEGDRNDLG 80 (462)
Q Consensus 1 ~~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~ 80 (462)
|..+.||+++|+|++||++|++.||+.|+.+|++|||++++.+...+.+.... .++++|+.+|++++.+. ..++.
T Consensus 3 ~~~~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~~----~~~i~~v~lp~g~~~~~-~~~~~ 77 (448)
T PLN02562 3 VTQRPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLDP----KLGITFMSISDGQDDDP-PRDFF 77 (448)
T ss_pred CCCCcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccCC----CCCEEEEECCCCCCCCc-cccHH
Confidence 44567999999999999999999999999999999999999887666543211 13699999998875432 22344
Q ss_pred HHHHHHHHhccHHHHHHHHHHhhccCCCceEEEeCCCcchHHHHHHHcCCceEEEccchhHHHHHHHhHhhhhcCCCcCC
Q 044266 81 MLTKTMVRVMPEKLEELIENINRLENEKITCVVADGSMGWVMEVAEKMKLRRAAFWPAAAGLLALSFSVQRFLDDGIVDD 160 (462)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~ 160 (462)
.+...+...+.+.++++++.+... .+++|||+|.+..|+..+|+++|||.+.|+++++..+..+++++.....+..+.
T Consensus 78 ~l~~a~~~~~~~~l~~ll~~l~~~--~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~~~~~ 155 (448)
T PLN02562 78 SIENSMENTMPPQLERLLHKLDED--GEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTGLISE 155 (448)
T ss_pred HHHHHHHHhchHHHHHHHHHhcCC--CCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhcccccc
Confidence 455555556788888888876531 245899999999999999999999999999999988888777765444332221
Q ss_pred CCCCccccccccCCCCcccCcccchhhhhcCCCcchhhHHHHHHhhhhhccccEEEEcCccccchhhhc---------cC
Q 044266 161 NGTPVKQQMIQLAPTMAAIHSSKLVWACIGDFNTQKIVFDFTIDNNETIKKAERLICNSTYDLEPGALD---------LI 231 (462)
Q Consensus 161 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~---------~~ 231 (462)
.+.+.....+..+|+++.++..+++ .++..........+.+.+..+...+++.+++||+.+||+.... ..
T Consensus 156 ~~~~~~~~~~~~~Pg~~~l~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~~ 234 (448)
T PLN02562 156 TGCPRQLEKICVLPEQPLLSTEDLP-WLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNHQASYNNGQN 234 (448)
T ss_pred ccccccccccccCCCCCCCChhhCc-chhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHHHhhhccccC
Confidence 1111111122367888877777877 3332222222334555555666778899999999999975332 35
Q ss_pred CCccccCcccCCCCCCCCCCCCCCCCchhhHhhccCCCCcEEEEeccCcc-ccCHHHHHHHHHHHHhCCCCEEEEEcCCC
Q 044266 232 PEFLPIGPLLSSNRLGNSAGYFWPEDSTCLKWLDQQQQNSVIYVAFGSFT-VFDKEQFQELASGLELTNRPFLWVVRPDI 310 (462)
Q Consensus 232 p~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~-~~~~~~~~~~~~a~~~~~~~~i~~~~~~~ 310 (462)
|+++.|||++............++.+.++.+||++++++++|||||||+. ..+.+++++++.++++.+.+|||+++..
T Consensus 235 ~~v~~iGpl~~~~~~~~~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW~~~~~- 313 (448)
T PLN02562 235 PQILQIGPLHNQEATTITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEASGRPFIWVLNPV- 313 (448)
T ss_pred CCEEEecCcccccccccCCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHCCCCEEEEEcCC-
Confidence 78999999976432110001123456678899999988899999999985 6788999999999999999999999754
Q ss_pred CCcccccCchhHHHHhcCCceeecccCcccccCCCCcccceeccCchhhhhhhhcCCceeccccccchhhhHHhHhhhhe
Q 044266 311 TNDAIDAYPEGFQDRVATRRQMVGWAPQQKVLTHPSIACFLSHCGWNSTMEGVSNGVPFLCWPYFADQFLNESYICDIWK 390 (462)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~ll~~~~~~~~I~HgG~~sv~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g 390 (462)
....+|++|.++.++|+++++|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++.+|
T Consensus 314 ---~~~~l~~~~~~~~~~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g 390 (448)
T PLN02562 314 ---WREGLPPGYVERVSKQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVWK 390 (448)
T ss_pred ---chhhCCHHHHHHhccCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCcccchHHHHHHHHHHhC
Confidence 22358889999999999999999999999999999999999999999999999999999999999999999987569
Q ss_pred eeEEeecCCCCccCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhHhhcCCCcHHHHHHHHHHHH
Q 044266 391 VGLRFNKNKNGIITREEIMKKVDQVLEDENFKARALDLKETSLNSVREGGQSDKTFKNFVQWIK 454 (462)
Q Consensus 391 ~g~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 454 (462)
+|+.+ +.+++++|.++|+++|+|++||+||++++++++++ .+||||.+++++|++++.
T Consensus 391 ~g~~~-----~~~~~~~l~~~v~~~l~~~~~r~~a~~l~~~~~~~-~~gGSS~~nl~~~v~~~~ 448 (448)
T PLN02562 391 IGVRI-----SGFGQKEVEEGLRKVMEDSGMGERLMKLRERAMGE-EARLRSMMNFTTLKDELK 448 (448)
T ss_pred ceeEe-----CCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHhC
Confidence 99888 34799999999999999999999999999999887 567999999999999863
No 2
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=2.7e-67 Score=507.03 Aligned_cols=432 Identities=27% Similarity=0.531 Sum_probs=338.9
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcCCCCCCCC-CCCCHHHH
Q 044266 4 RPHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIPDGMEPEG-DRNDLGML 82 (462)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~-~~~~~~~~ 82 (462)
+.||+++|++++||++|+++||+.|+.+|+.|||++++.+.. ... ....+++|..+|++++.+. .......+
T Consensus 7 ~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~--~~~-----~~~~~i~~~~ip~glp~~~~~~~~~~~~ 79 (451)
T PLN02410 7 RRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYF--SPS-----DDFTDFQFVTIPESLPESDFKNLGPIEF 79 (451)
T ss_pred CCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCccccc--ccc-----cCCCCeEEEeCCCCCCcccccccCHHHH
Confidence 469999999999999999999999999999999999997642 111 1113699999999887642 22234456
Q ss_pred HHHHHHhccHHHHHHHHHHhhccCCCceEEEeCCCcchHHHHHHHcCCceEEEccchhHHHHHHHhHhhhhcCCC-cCCC
Q 044266 83 TKTMVRVMPEKLEELIENINRLENEKITCVVADGSMGWVMEVAEKMKLRRAAFWPAAAGLLALSFSVQRFLDDGI-VDDN 161 (462)
Q Consensus 83 ~~~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~-~~~~ 161 (462)
+..+.+.+.+.++++++.+......+++|||+|.+.+|+..+|+++|||.+.|++++++.+..+++++..+..+. .+..
T Consensus 80 ~~~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~~~~~~~~ 159 (451)
T PLN02410 80 LHKLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLYANNVLAPLK 159 (451)
T ss_pred HHHHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHHhccCCCCcc
Confidence 666666777778888877542111467999999999999999999999999999999998887776655443322 1101
Q ss_pred CCCccccccccCCCCcccCcccchhhhhcCCCcchhhHHHHHHhhhhhccccEEEEcCccccchhhhccC-----CCccc
Q 044266 162 GTPVKQQMIQLAPTMAAIHSSKLVWACIGDFNTQKIVFDFTIDNNETIKKAERLICNSTYDLEPGALDLI-----PEFLP 236 (462)
Q Consensus 162 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~-----p~v~~ 236 (462)
... ......+|++++++..+++ ...... .......+... ..+.+++.+++||+.+||+...+.+ +++++
T Consensus 160 ~~~--~~~~~~iPg~~~~~~~dlp-~~~~~~--~~~~~~~~~~~-~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~~v~~ 233 (451)
T PLN02410 160 EPK--GQQNELVPEFHPLRCKDFP-VSHWAS--LESIMELYRNT-VDKRTASSVIINTASCLESSSLSRLQQQLQIPVYP 233 (451)
T ss_pred ccc--cCccccCCCCCCCChHHCc-chhcCC--cHHHHHHHHHH-hhcccCCEEEEeChHHhhHHHHHHHHhccCCCEEE
Confidence 100 0112357888877777766 222111 11222223222 2356789999999999998766543 58999
Q ss_pred cCcccCCCCCCCCCCCCCCCCchhhHhhccCCCCcEEEEeccCccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCC--cc
Q 044266 237 IGPLLSSNRLGNSAGYFWPEDSTCLKWLDQQQQNSVIYVAFGSFTVFDKEQFQELASGLELTNRPFLWVVRPDITN--DA 314 (462)
Q Consensus 237 vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~--~~ 314 (462)
|||++....... ..+..+.++.+||+.+++++||||||||....+.+++++++.+|+..+.+|||+++..... +.
T Consensus 234 vGpl~~~~~~~~---~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~~~~~~~~~ 310 (451)
T PLN02410 234 IGPLHLVASAPT---SLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRPGSVRGSEW 310 (451)
T ss_pred ecccccccCCCc---cccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEccCcccccch
Confidence 999975432111 1123345789999999889999999999999999999999999999999999999853211 11
Q ss_pred cccCchhHHHHhcCCceeecccCcccccCCCCcccceeccCchhhhhhhhcCCceeccccccchhhhHHhHhhhheeeEE
Q 044266 315 IDAYPEGFQDRVATRRQMVGWAPQQKVLTHPSIACFLSHCGWNSTMEGVSNGVPFLCWPYFADQFLNESYICDIWKVGLR 394 (462)
Q Consensus 315 ~~~~~~~~~~~~~~~v~~~~~~pq~~ll~~~~~~~~I~HgG~~sv~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~g~~ 394 (462)
...+|++|.+++++|+++++|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++.+|+|++
T Consensus 311 ~~~lp~~f~er~~~~g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~ 390 (451)
T PLN02410 311 IESLPKEFSKIISGRGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQKVNARYLECVWKIGIQ 390 (451)
T ss_pred hhcCChhHHHhccCCeEEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccccccCHHHHHHHHHHhCeeEE
Confidence 23489999999999999999999999999999999999999999999999999999999999999999999876799999
Q ss_pred eecCCCCccCHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHhHhhcCCCcHHHHHHHHHHHHh
Q 044266 395 FNKNKNGIITREEIMKKVDQVLEDE---NFKARALDLKETSLNSVREGGQSDKTFKNFVQWIKA 455 (462)
Q Consensus 395 ~~~~~~~~~~~~~l~~~i~~ll~~~---~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 455 (462)
+. ..+++++|+++|+++|.|+ +||++|+++++++++++++||+|.+++++|++++..
T Consensus 391 ~~----~~~~~~~v~~av~~lm~~~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~fv~~~~~ 450 (451)
T PLN02410 391 VE----GDLDRGAVERAVKRLMVEEEGEEMRKRAISLKEQLRASVISGGSSHNSLEEFVHFMRT 450 (451)
T ss_pred eC----CcccHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Confidence 95 5689999999999999875 799999999999999999999999999999999863
No 3
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=1.8e-66 Score=502.87 Aligned_cols=447 Identities=28% Similarity=0.555 Sum_probs=347.0
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhh--cCC--CC-CCCCeEEEEcCCCCCCCCC-CC
Q 044266 4 RPHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNAL--GQN--NY-IGDQIKLVSIPDGMEPEGD-RN 77 (462)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~--~~~--~~-~~~~i~~~~i~~~~~~~~~-~~ 77 (462)
+.||+++|+|++||++|++.||+.|+.+|..|||++++.+...+.+.. ... .. ....++|..+|++++.+.. ..
T Consensus 7 ~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~pdglp~~~~~~~ 86 (480)
T PLN02555 7 LVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFEDGWAEDDPRRQ 86 (480)
T ss_pred CCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCCCCCCCCccccc
Confidence 579999999999999999999999999999999999998776654311 000 00 1123777778888865422 23
Q ss_pred CHHHHHHHHHHhccHHHHHHHHHHhhccCCCceEEEeCCCcchHHHHHHHcCCceEEEccchhHHHHHHHhHhhhhcCCC
Q 044266 78 DLGMLTKTMVRVMPEKLEELIENINRLENEKITCVVADGSMGWVMEVAEKMKLRRAAFWPAAAGLLALSFSVQRFLDDGI 157 (462)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~ 157 (462)
+...++..+.+.+.+.++++++.+.... .+++|||+|.+..|+..+|+++|||.+.|++++++.+..+++++. +.
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~~~~----~~ 161 (480)
T PLN02555 87 DLDLYLPQLELVGKREIPNLVKRYAEQG-RPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYHYYH----GL 161 (480)
T ss_pred CHHHHHHHHHHhhhHHHHHHHHHHhccC-CCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHHHhh----cC
Confidence 4545566665567788888888764211 334999999999999999999999999999999998888877642 11
Q ss_pred cCCCCCCccccccccCCCCcccCcccchhhhhcCCCcchhhHHHHHHhhhhhccccEEEEcCccccchhhhccC---CCc
Q 044266 158 VDDNGTPVKQQMIQLAPTMAAIHSSKLVWACIGDFNTQKIVFDFTIDNNETIKKAERLICNSTYDLEPGALDLI---PEF 234 (462)
Q Consensus 158 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~---p~v 234 (462)
.+........ ....+|+++.++..+++ .++..........+.+.+..+...+++.+++||+.+||......+ .++
T Consensus 162 ~~~~~~~~~~-~~~~iPglp~l~~~dlp-~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~~~~v 239 (480)
T PLN02555 162 VPFPTETEPE-IDVQLPCMPLLKYDEIP-SFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELEKEIIDYMSKLCPI 239 (480)
T ss_pred CCcccccCCC-ceeecCCCCCcCHhhCc-ccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHhhCCCE
Confidence 1100011111 12358999888888888 443321122334445555556677889999999999998766543 248
Q ss_pred cccCcccCCCCCC-CC-CCCCCCCCchhhHhhccCCCCcEEEEeccCccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCC
Q 044266 235 LPIGPLLSSNRLG-NS-AGYFWPEDSTCLKWLDQQQQNSVIYVAFGSFTVFDKEQFQELASGLELTNRPFLWVVRPDITN 312 (462)
Q Consensus 235 ~~vGp~~~~~~~~-~~-~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~ 312 (462)
+.|||+....... .. ....+..+++|.+||+.++++++|||||||+.....+++.+++.+++..+++|||++++....
T Consensus 240 ~~iGPl~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~flW~~~~~~~~ 319 (480)
T PLN02555 240 KPVGPLFKMAKTPNSDVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVLNSGVSFLWVMRPPHKD 319 (480)
T ss_pred EEeCcccCccccccccccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHHhcCCeEEEEEecCccc
Confidence 9999996532110 00 011134567899999999888999999999999999999999999999999999998743111
Q ss_pred --cccccCchhHHHHhcCCceeecccCcccccCCCCcccceeccCchhhhhhhhcCCceeccccccchhhhHHhHhhhhe
Q 044266 313 --DAIDAYPEGFQDRVATRRQMVGWAPQQKVLTHPSIACFLSHCGWNSTMEGVSNGVPFLCWPYFADQFLNESYICDIWK 390 (462)
Q Consensus 313 --~~~~~~~~~~~~~~~~~v~~~~~~pq~~ll~~~~~~~~I~HgG~~sv~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g 390 (462)
.....+|+++.++.++|+++++|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++.||
T Consensus 320 ~~~~~~~lp~~~~~~~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~g 399 (480)
T PLN02555 320 SGVEPHVLPEEFLEKAGDKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQWGDQVTDAVYLVDVFK 399 (480)
T ss_pred ccchhhcCChhhhhhcCCceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEeCCCccccHHHHHHHHHHhC
Confidence 112357889998899999999999999999999999999999999999999999999999999999999999998789
Q ss_pred eeEEeecC--CCCccCHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHhHhhcCCCcHHHHHHHHHHHHhhh
Q 044266 391 VGLRFNKN--KNGIITREEIMKKVDQVLEDE---NFKARALDLKETSLNSVREGGQSDKTFKNFVQWIKAEA 457 (462)
Q Consensus 391 ~g~~~~~~--~~~~~~~~~l~~~i~~ll~~~---~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 457 (462)
+|+++... +...+++++|.++|+++|+++ ++|+||++|++++++++++||+|.+++++||+++..+.
T Consensus 400 vGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~~g~~~r~ra~~l~~~a~~A~~egGSS~~~l~~~v~~i~~~~ 471 (480)
T PLN02555 400 TGVRLCRGEAENKLITREEVAECLLEATVGEKAAELKQNALKWKEEAEAAVAEGGSSDRNFQEFVDKLVRKS 471 (480)
T ss_pred ceEEccCCccccCcCcHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhcc
Confidence 99999421 124689999999999999764 79999999999999999999999999999999998774
No 4
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.8e-66 Score=498.81 Aligned_cols=426 Identities=30% Similarity=0.587 Sum_probs=336.1
Q ss_pred CCC-CCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcCCCCCCC--CCCC
Q 044266 1 MLR-RPHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIPDGMEPE--GDRN 77 (462)
Q Consensus 1 ~~~-~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~--~~~~ 77 (462)
|.+ +.||+++|++++||++|+++||+.|+.+|+.|||++++.+...+... ..++++|..+|++++.+ +...
T Consensus 1 ~~~~~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~------~~~~i~~~~ipdglp~~~~~~~~ 74 (449)
T PLN02173 1 MEKMRGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLD------PSSPISIATISDGYDQGGFSSAG 74 (449)
T ss_pred CCCCCcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccC------CCCCEEEEEcCCCCCCccccccc
Confidence 444 45999999999999999999999999999999999999876544321 11369999999988863 2233
Q ss_pred CHHHHHHHHHHhccHHHHHHHHHHhhccCCCc-eEEEeCCCcchHHHHHHHcCCceEEEccchhHHHHHHHhHhhhhcCC
Q 044266 78 DLGMLTKTMVRVMPEKLEELIENINRLENEKI-TCVVADGSMGWVMEVAEKMKLRRAAFWPAAAGLLALSFSVQRFLDDG 156 (462)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-Dlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~ 156 (462)
+...++..+.+.+.+.++++++.+... .+| ||||+|.+.+|+..+|+++|||.+.|++++++....+++ +.. ..+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~-~~~-~~~ 150 (449)
T PLN02173 75 SVPEYLQNFKTFGSKTVADIIRKHQST--DNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYL-SYI-NNG 150 (449)
T ss_pred CHHHHHHHHHHhhhHHHHHHHHHhhcc--CCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHh-HHh-ccC
Confidence 455667777667888899998876431 345 999999999999999999999999999988877655443 111 110
Q ss_pred CcCCCCCCccccccccCCCCcccCcccchhhhhcCCCcchhhHHHHHHhhhhhccccEEEEcCccccchhhhccC---CC
Q 044266 157 IVDDNGTPVKQQMIQLAPTMAAIHSSKLVWACIGDFNTQKIVFDFTIDNNETIKKAERLICNSTYDLEPGALDLI---PE 233 (462)
Q Consensus 157 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~---p~ 233 (462)
.....+|+++.+...+++ .++............+.+..+...+++.+++||+.++|+...+.+ ++
T Consensus 151 -----------~~~~~~pg~p~l~~~dlp-~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~ 218 (449)
T PLN02173 151 -----------SLTLPIKDLPLLELQDLP-TFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSKVCP 218 (449)
T ss_pred -----------CccCCCCCCCCCChhhCC-hhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHhcCC
Confidence 011236888877778887 433322222223444445556678899999999999998766544 47
Q ss_pred ccccCcccCCCC----C-CCCC--CCCC--CCCchhhHhhccCCCCcEEEEeccCccccCHHHHHHHHHHHHhCCCCEEE
Q 044266 234 FLPIGPLLSSNR----L-GNSA--GYFW--PEDSTCLKWLDQQQQNSVIYVAFGSFTVFDKEQFQELASGLELTNRPFLW 304 (462)
Q Consensus 234 v~~vGp~~~~~~----~-~~~~--~~~~--~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~ 304 (462)
++.|||+..... . .... ...| ..+++|.+||+.++++++|||||||......+++.+++.+| .+.+|+|
T Consensus 219 v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s~~~flW 296 (449)
T PLN02173 219 VLTIGPTVPSMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--SNFSYLW 296 (449)
T ss_pred eeEEcccCchhhccccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--cCCCEEE
Confidence 999999974210 0 0000 0111 23456999999999899999999999999999999999999 6788999
Q ss_pred EEcCCCCCcccccCchhHHHHh-cCCceeecccCcccccCCCCcccceeccCchhhhhhhhcCCceeccccccchhhhHH
Q 044266 305 VVRPDITNDAIDAYPEGFQDRV-ATRRQMVGWAPQQKVLTHPSIACFLSHCGWNSTMEGVSNGVPFLCWPYFADQFLNES 383 (462)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~pq~~ll~~~~~~~~I~HgG~~sv~eal~~GvP~l~~P~~~DQ~~na~ 383 (462)
++... ....+|++|.++. ++|+++++|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+
T Consensus 297 vvr~~----~~~~lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~ 372 (449)
T PLN02173 297 VVRAS----EESKLPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQPMNAK 372 (449)
T ss_pred EEecc----chhcccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecCchhcchHHHH
Confidence 99853 2235788888887 688999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhheeeEEeecCC-CCccCHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHhHhhcCCCcHHHHHHHHHHHH
Q 044266 384 YICDIWKVGLRFNKNK-NGIITREEIMKKVDQVLEDE---NFKARALDLKETSLNSVREGGQSDKTFKNFVQWIK 454 (462)
Q Consensus 384 ~v~~~~g~g~~~~~~~-~~~~~~~~l~~~i~~ll~~~---~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 454 (462)
++++.||+|+.+..++ +..+++++|+++|+++|.|+ ++|+||+++++++++++++||+|.+++++|++++.
T Consensus 373 ~v~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~~~~~~~~r~~a~~~~~~a~~Av~~gGSS~~~l~~~v~~~~ 447 (449)
T PLN02173 373 YIQDVWKVGVRVKAEKESGIAKREEIEFSIKEVMEGEKSKEMKENAGKWRDLAVKSLSEGGSTDININTFVSKIQ 447 (449)
T ss_pred HHHHHhCceEEEeecccCCcccHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhc
Confidence 9998679999997532 12469999999999999764 68999999999999999999999999999999874
No 5
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=3.9e-66 Score=498.19 Aligned_cols=442 Identities=23% Similarity=0.431 Sum_probs=333.6
Q ss_pred CCCCEEEEEcCCCccChHHHHHHHHHHHhCC--CEEEEEeCCcch-HHHHHhhcCCCCCCCCeEEEEcCCCCCCC--CCC
Q 044266 2 LRRPHVLAFPYPAQGHVIPLLEISQCLVKHG--VKVTFLNTDYNH-KRVVNALGQNNYIGDQIKLVSIPDGMEPE--GDR 76 (462)
Q Consensus 2 ~~~~~Il~~~~~~~GH~~p~l~La~~L~~rG--h~Vt~~~~~~~~-~~v~~~~~~~~~~~~~i~~~~i~~~~~~~--~~~ 76 (462)
|++.||+++|++++||++|++.||+.|+.+| ..|||++++.+. ..+...........++++|..+|+..... +..
T Consensus 1 ~~~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~ 80 (468)
T PLN02207 1 MRNAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELEEKPTLGGT 80 (468)
T ss_pred CCCcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCCCCCccccc
Confidence 3567999999999999999999999999998 999999999765 22322111101111369999999643211 112
Q ss_pred CCHHHHHHHHHHhccHH----HHHHHHHHhhccCCCc-eEEEeCCCcchHHHHHHHcCCceEEEccchhHHHHHHHhHhh
Q 044266 77 NDLGMLTKTMVRVMPEK----LEELIENINRLENEKI-TCVVADGSMGWVMEVAEKMKLRRAAFWPAAAGLLALSFSVQR 151 (462)
Q Consensus 77 ~~~~~~~~~~~~~~~~~----~~~l~~~l~~~~~~~~-Dlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~ 151 (462)
.+....+..+.+.+.+. +.++++.... +.+| +|||+|.+.+|+..+|+++|||.+.|+++++..+..+++++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~~ 158 (468)
T PLN02207 81 QSVEAYVYDVIEKNIPLVRNIVMDILSSLAL--DGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLAD 158 (468)
T ss_pred cCHHHHHHHHHHhcchhHHHHHHHHHHHhcc--CCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHhhh
Confidence 34444443444455443 4444443211 1234 999999999999999999999999999999988888877664
Q ss_pred hhcCCCcCCCCCCccccccccCCCC-cccCcccchhhhhcCCCcchhhHHHHHHhhhhhccccEEEEcCccccchhhh--
Q 044266 152 FLDDGIVDDNGTPVKQQMIQLAPTM-AAIHSSKLVWACIGDFNTQKIVFDFTIDNNETIKKAERLICNSTYDLEPGAL-- 228 (462)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~-- 228 (462)
...... ....+..+ ....+||+ +.+...+++ .++..... ...+.+......+++.+++||++++|++..
T Consensus 159 ~~~~~~--~~~~~~~~-~~~~vPgl~~~l~~~dlp-~~~~~~~~----~~~~~~~~~~~~~~~~vlvNtf~~LE~~~~~~ 230 (468)
T PLN02207 159 RHSKDT--SVFVRNSE-EMLSIPGFVNPVPANVLP-SALFVEDG----YDAYVKLAILFTKANGILVNSSFDIEPYSVNH 230 (468)
T ss_pred cccccc--ccCcCCCC-CeEECCCCCCCCChHHCc-chhcCCcc----HHHHHHHHHhcccCCEEEEEchHHHhHHHHHH
Confidence 321100 00001111 22368998 578888887 33322111 233444445678899999999999998732
Q ss_pred ----ccCCCccccCcccCCCCCCCCCCCCCCCCchhhHhhccCCCCcEEEEeccCccccCHHHHHHHHHHHHhCCCCEEE
Q 044266 229 ----DLIPEFLPIGPLLSSNRLGNSAGYFWPEDSTCLKWLDQQQQNSVIYVAFGSFTVFDKEQFQELASGLELTNRPFLW 304 (462)
Q Consensus 229 ----~~~p~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~ 304 (462)
+..|+++.|||++.......+ ......++++.+||++++++++|||||||....+.+++++++.+|+..+++|||
T Consensus 231 ~~~~~~~p~v~~VGPl~~~~~~~~~-~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~flW 309 (468)
T PLN02207 231 FLDEQNYPSVYAVGPIFDLKAQPHP-EQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRFLW 309 (468)
T ss_pred HHhccCCCcEEEecCCcccccCCCC-ccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcEEE
Confidence 345789999999864321100 001123467999999998899999999999999999999999999999999999
Q ss_pred EEcCCCCCcccccCchhHHHHhcCCceeecccCcccccCCCCcccceeccCchhhhhhhhcCCceeccccccchhhhHHh
Q 044266 305 VVRPDITNDAIDAYPEGFQDRVATRRQMVGWAPQQKVLTHPSIACFLSHCGWNSTMEGVSNGVPFLCWPYFADQFLNESY 384 (462)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~ll~~~~~~~~I~HgG~~sv~eal~~GvP~l~~P~~~DQ~~na~~ 384 (462)
+++.... .....+|++|.++.++|+.+++|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||++
T Consensus 310 ~~r~~~~-~~~~~lp~~f~er~~~~g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~ 388 (468)
T PLN02207 310 SLRTEEV-TNDDLLPEGFLDRVSGRGMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMYAEQQLNAFL 388 (468)
T ss_pred EEeCCCc-cccccCCHHHHhhcCCCeEEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecCccccchhhHHH
Confidence 9985311 012348899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HhhhheeeEEeecC----CCCccCHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHhHhhcCCCcHHHHHHHHHHHHh
Q 044266 385 ICDIWKVGLRFNKN----KNGIITREEIMKKVDQVLE--DENFKARALDLKETSLNSVREGGQSDKTFKNFVQWIKA 455 (462)
Q Consensus 385 v~~~~g~g~~~~~~----~~~~~~~~~l~~~i~~ll~--~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 455 (462)
+++.+|+|+++..+ +....++++|.++|+++|+ +++||+||+++++.+++++.+||||.+++++|++++..
T Consensus 389 ~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~~~~~~r~~a~~l~~~a~~A~~~GGSS~~~l~~~v~~~~~ 465 (468)
T PLN02207 389 MVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMNKDNNVVRKRVMDISQMIQRATKNGGSSFAAIEKFIHDVIG 465 (468)
T ss_pred HHHHhCceEEEecccccccCCcccHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh
Confidence 77757999987421 1134699999999999997 67999999999999999999999999999999999875
No 6
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=4.6e-66 Score=496.76 Aligned_cols=431 Identities=28% Similarity=0.513 Sum_probs=337.0
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHh-CCCEEEEEeCCcc-hHHHHHhhcCCCCCCCCeEEEEcCCCCCCCC--CCCC
Q 044266 3 RRPHVLAFPYPAQGHVIPLLEISQCLVK-HGVKVTFLNTDYN-HKRVVNALGQNNYIGDQIKLVSIPDGMEPEG--DRND 78 (462)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~~-~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~--~~~~ 78 (462)
++.||+++|++++||++|++.||+.|+. +|+.|||++++.+ ...+.+. . ...++++|+.++++++.+. ...+
T Consensus 2 ~~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~---~-~~~~~i~~~~i~dglp~g~~~~~~~ 77 (455)
T PLN02152 2 APPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPN---H-NNVENLSFLTFSDGFDDGVISNTDD 77 (455)
T ss_pred CCcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhcc---C-CCCCCEEEEEcCCCCCCcccccccc
Confidence 3569999999999999999999999996 7999999999864 2211111 1 1113699999998887652 2334
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHhhccCCCceEEEeCCCcchHHHHHHHcCCceEEEccchhHHHHHHHhHhhhhcCCCc
Q 044266 79 LGMLTKTMVRVMPEKLEELIENINRLENEKITCVVADGSMGWVMEVAEKMKLRRAAFWPAAAGLLALSFSVQRFLDDGIV 158 (462)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~ 158 (462)
....+..+.+.+.+.++++++.+.... .+++|||+|.+.+|+..+|+++|||.+.|++++++....+++++...
T Consensus 78 ~~~~~~~~~~~~~~~l~~~l~~l~~~~-~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~~----- 151 (455)
T PLN02152 78 VQNRLVNFERNGDKALSDFIEANLNGD-SPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTGN----- 151 (455)
T ss_pred HHHHHHHHHHhccHHHHHHHHHhhccC-CCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhccC-----
Confidence 555666677778888999998764311 34599999999999999999999999999999999888877654210
Q ss_pred CCCCCCccccccccCCCCcccCcccchhhhhcCCCcchhhHHHHHHhhhhhc--cccEEEEcCccccchhhhccC--CCc
Q 044266 159 DDNGTPVKQQMIQLAPTMAAIHSSKLVWACIGDFNTQKIVFDFTIDNNETIK--KAERLICNSTYDLEPGALDLI--PEF 234 (462)
Q Consensus 159 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~ns~~~le~~~~~~~--p~v 234 (462)
.....+|+++.+...+++ .++............+.+..+... .++.+++||+.+||....+.+ .++
T Consensus 152 ---------~~~~~iPglp~l~~~dlp-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~v 221 (455)
T PLN02152 152 ---------NSVFEFPNLPSLEIRDLP-SFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPNIEM 221 (455)
T ss_pred ---------CCeeecCCCCCCchHHCc-hhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhcCCE
Confidence 012258888888888887 444322222233344444444443 246999999999998877766 369
Q ss_pred cccCcccCCCC--CCCCCC--CCCCCCchhhHhhccCCCCcEEEEeccCccccCHHHHHHHHHHHHhCCCCEEEEEcCCC
Q 044266 235 LPIGPLLSSNR--LGNSAG--YFWPEDSTCLKWLDQQQQNSVIYVAFGSFTVFDKEQFQELASGLELTNRPFLWVVRPDI 310 (462)
Q Consensus 235 ~~vGp~~~~~~--~~~~~~--~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~ 310 (462)
+.|||+..... ...... ..+..+.++.+||+.+++++||||||||....+.+++++++.+|+..+.+|||+++...
T Consensus 222 ~~VGPL~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~r~~~ 301 (455)
T PLN02152 222 VAVGPLLPAEIFTGSESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVITDKL 301 (455)
T ss_pred EEEcccCccccccccccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEEecCc
Confidence 99999974321 000000 01223458999999998889999999999999999999999999999999999997531
Q ss_pred CC------cc--cccCchhHHHHhcCCceeecccCcccccCCCCcccceeccCchhhhhhhhcCCceeccccccchhhhH
Q 044266 311 TN------DA--IDAYPEGFQDRVATRRQMVGWAPQQKVLTHPSIACFLSHCGWNSTMEGVSNGVPFLCWPYFADQFLNE 382 (462)
Q Consensus 311 ~~------~~--~~~~~~~~~~~~~~~v~~~~~~pq~~ll~~~~~~~~I~HgG~~sv~eal~~GvP~l~~P~~~DQ~~na 382 (462)
.. .. ...++++|.++.++|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||
T Consensus 302 ~~~~~~~~~~~~~~~~~~~f~e~~~~~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na 381 (455)
T PLN02152 302 NREAKIEGEEETEIEKIAGFRHELEEVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWSDQPANA 381 (455)
T ss_pred ccccccccccccccccchhHHHhccCCeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEeccccccchHHH
Confidence 10 00 11347889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhhhheeeEEeecCCCCccCHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHhHhhcCCCcHHHHHHHHHHH
Q 044266 383 SYICDIWKVGLRFNKNKNGIITREEIMKKVDQVLEDE--NFKARALDLKETSLNSVREGGQSDKTFKNFVQWI 453 (462)
Q Consensus 383 ~~v~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ll~~~--~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 453 (462)
+++++.||+|+.+..++.+..++++|+++|+++|+|+ ++|+||++++++++++..+||+|.+++++|++++
T Consensus 382 ~~~~~~~~~G~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~r~~a~~~~~~~~~a~~~ggsS~~nl~~li~~i 454 (455)
T PLN02152 382 KLLEEIWKTGVRVRENSEGLVERGEIRRCLEAVMEEKSVELRESAEKWKRLAIEAGGEGGSSDKNVEAFVKTL 454 (455)
T ss_pred HHHHHHhCceEEeecCcCCcCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 9999866888887643334569999999999999876 5899999999999999999999999999999986
No 7
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=8.9e-66 Score=498.60 Aligned_cols=430 Identities=26% Similarity=0.498 Sum_probs=332.8
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHH--HHhCCCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcCCCCCCCCCCCCHH
Q 044266 3 RRPHVLAFPYPAQGHVIPLLEISQC--LVKHGVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIPDGMEPEGDRNDLG 80 (462)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~l~La~~--L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~ 80 (462)
.+.||+++|+|++||++|++.||+. |++||++|||++++.+.+.+.... .....+++..+|++++.+.. .+..
T Consensus 7 ~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~~----~~~~~~~~~~~~~glp~~~~-~~~~ 81 (456)
T PLN02210 7 QETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTVE----KPRRPVDLVFFSDGLPKDDP-RAPE 81 (456)
T ss_pred CCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhcccc----CCCCceEEEECCCCCCCCcc-cCHH
Confidence 4679999999999999999999999 559999999999998876653321 11246888888888776532 3445
Q ss_pred HHHHHHHHhccHHHHHHHHHHhhccCCCceEEEeCCCcchHHHHHHHcCCceEEEccchhHHHHHHHhHhhhhcCCCcCC
Q 044266 81 MLTKTMVRVMPEKLEELIENINRLENEKITCVVADGSMGWVMEVAEKMKLRRAAFWPAAAGLLALSFSVQRFLDDGIVDD 160 (462)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~ 160 (462)
.++..+.+.+.+.++++++. .+|||||+|.+.+|+..+|+++|||.+.|+++++..+..+.+++... +..+.
T Consensus 82 ~~~~~~~~~~~~~l~~~l~~------~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~~--~~~~~ 153 (456)
T PLN02210 82 TLLKSLNKVGAKNLSKIIEE------KRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMKT--NSFPD 153 (456)
T ss_pred HHHHHHHHhhhHHHHHHHhc------CCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhcc--CCCCc
Confidence 56666666666667777665 68999999999999999999999999999999988877776654211 11111
Q ss_pred CCCCccccccccCCCCcccCcccchhhhhcCCCcchhhHHHHHHhhhhhccccEEEEcCccccchhhhccC---CCcccc
Q 044266 161 NGTPVKQQMIQLAPTMAAIHSSKLVWACIGDFNTQKIVFDFTIDNNETIKKAERLICNSTYDLEPGALDLI---PEFLPI 237 (462)
Q Consensus 161 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~---p~v~~v 237 (462)
. ........+|+++.+...+++ .++.... ...+...+.+..+....++.+++||+.++|....+.+ +++++|
T Consensus 154 ~---~~~~~~~~~Pgl~~~~~~dl~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~v~~V 228 (456)
T PLN02210 154 L---EDLNQTVELPALPLLEVRDLP-SFMLPSG-GAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMADLKPVIPI 228 (456)
T ss_pred c---cccCCeeeCCCCCCCChhhCC-hhhhcCC-chHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHhhcCCEEEE
Confidence 0 000112357888777777776 3332221 1112222223334556789999999999998766653 589999
Q ss_pred CcccCCC---CCCCC--CC---CCCCCCchhhHhhccCCCCcEEEEeccCccccCHHHHHHHHHHHHhCCCCEEEEEcCC
Q 044266 238 GPLLSSN---RLGNS--AG---YFWPEDSTCLKWLDQQQQNSVIYVAFGSFTVFDKEQFQELASGLELTNRPFLWVVRPD 309 (462)
Q Consensus 238 Gp~~~~~---~~~~~--~~---~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~ 309 (462)
||+.... ..... .+ ..|..+++|.+|++.++++++|||||||......+++++++.+|+..+.+|||+++..
T Consensus 229 GPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~flw~~~~~ 308 (456)
T PLN02210 229 GPLVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGVPFLWVIRPK 308 (456)
T ss_pred cccCchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 9997421 10000 00 1245567899999999889999999999988899999999999999999999999754
Q ss_pred CCCcccccCchhHHHHh-cCCceeecccCcccccCCCCcccceeccCchhhhhhhhcCCceeccccccchhhhHHhHhhh
Q 044266 310 ITNDAIDAYPEGFQDRV-ATRRQMVGWAPQQKVLTHPSIACFLSHCGWNSTMEGVSNGVPFLCWPYFADQFLNESYICDI 388 (462)
Q Consensus 310 ~~~~~~~~~~~~~~~~~-~~~v~~~~~~pq~~ll~~~~~~~~I~HgG~~sv~eal~~GvP~l~~P~~~DQ~~na~~v~~~ 388 (462)
. ....+..+.++. ++++.+++|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++.
T Consensus 309 ~----~~~~~~~~~~~~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~~~ 384 (456)
T PLN02210 309 E----KAQNVQVLQEMVKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQPIDARLLVDV 384 (456)
T ss_pred c----cccchhhHHhhccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecccccccHHHHHHHHHH
Confidence 1 112345566665 47888889999999999999999999999999999999999999999999999999999975
Q ss_pred heeeEEeecCC-CCccCHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHhHhhcCCCcHHHHHHHHHHHH
Q 044266 389 WKVGLRFNKNK-NGIITREEIMKKVDQVLEDE---NFKARALDLKETSLNSVREGGQSDKTFKNFVQWIK 454 (462)
Q Consensus 389 ~g~g~~~~~~~-~~~~~~~~l~~~i~~ll~~~---~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 454 (462)
+|+|+++..++ ++.+++++|+++|+++|.|+ ++|+||++|++.+++++++||||.+++++|++++.
T Consensus 385 ~g~G~~l~~~~~~~~~~~~~l~~av~~~m~~~~g~~~r~~a~~l~~~a~~Av~~gGSS~~~l~~~v~~~~ 454 (456)
T PLN02210 385 FGIGVRMRNDAVDGELKVEEVERCIEAVTEGPAAADIRRRAAELKHVARLALAPGGSSARNLDLFISDIT 454 (456)
T ss_pred hCeEEEEeccccCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Confidence 69999996421 24689999999999999876 49999999999999999999999999999999875
No 8
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=5.5e-65 Score=494.41 Aligned_cols=442 Identities=29% Similarity=0.481 Sum_probs=329.8
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcCC----CCCCCCCC-C
Q 044266 3 RRPHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIPD----GMEPEGDR-N 77 (462)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~----~~~~~~~~-~ 77 (462)
.+.||+++|+|++||++|++.||+.|+.+|+.|||++++.+...+.+... ..+++++..+|. +++.+... .
T Consensus 8 ~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~----~~~~i~~~~lp~P~~~~lPdG~~~~~ 83 (477)
T PLN02863 8 AGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLS----KHPSIETLVLPFPSHPSIPSGVENVK 83 (477)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcc----cCCCeeEEeCCCCCcCCCCCCCcChh
Confidence 36799999999999999999999999999999999999998877655421 113577776541 33333211 1
Q ss_pred C----HHHHHHHHHHhccHHHHHHHHHHhhccCCCceEEEeCCCcchHHHHHHHcCCceEEEccchhHHHHHHHhHhhhh
Q 044266 78 D----LGMLTKTMVRVMPEKLEELIENINRLENEKITCVVADGSMGWVMEVAEKMKLRRAAFWPAAAGLLALSFSVQRFL 153 (462)
Q Consensus 78 ~----~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~ 153 (462)
+ ....+......+.+.+.++++.+ . .+++|||+|.+.+|+..+|+++|||++.|++++++.+..+++++...
T Consensus 84 ~~~~~~~~~~~~a~~~~~~~~~~~l~~~---~-~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~~ 159 (477)
T PLN02863 84 DLPPSGFPLMIHALGELYAPLLSWFRSH---P-SPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWREM 159 (477)
T ss_pred hcchhhHHHHHHHHHHhHHHHHHHHHhC---C-CCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhcc
Confidence 1 11122222233444555555542 1 46899999999999999999999999999999999999988865321
Q ss_pred cCCCcCCCCCCccccccccCCCCcccCcccchhhhhcCCCcchhhHHHHHHhhhhhccccEEEEcCccccchhhhccC--
Q 044266 154 DDGIVDDNGTPVKQQMIQLAPTMAAIHSSKLVWACIGDFNTQKIVFDFTIDNNETIKKAERLICNSTYDLEPGALDLI-- 231 (462)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~-- 231 (462)
...... ........+..+||++.++..+++ .++............+.+.......++.+++||+.++|....+.+
T Consensus 160 ~~~~~~--~~~~~~~~~~~iPg~~~~~~~dlp-~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~ 236 (477)
T PLN02863 160 PTKINP--DDQNEILSFSKIPNCPKYPWWQIS-SLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEHLKK 236 (477)
T ss_pred cccccc--cccccccccCCCCCCCCcChHhCc-hhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHHHHh
Confidence 110000 000000012257888888888877 333221111223334444444456778899999999998766543
Q ss_pred ----CCccccCcccCCCCCCC---CCCC-CCCCCchhhHhhccCCCCcEEEEeccCccccCHHHHHHHHHHHHhCCCCEE
Q 044266 232 ----PEFLPIGPLLSSNRLGN---SAGY-FWPEDSTCLKWLDQQQQNSVIYVAFGSFTVFDKEQFQELASGLELTNRPFL 303 (462)
Q Consensus 232 ----p~v~~vGp~~~~~~~~~---~~~~-~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i 303 (462)
++++.|||+........ ..+. .+..++++..||+.++++++|||||||......+++.+++.+|+..+++||
T Consensus 237 ~~~~~~v~~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~fl 316 (477)
T PLN02863 237 ELGHDRVWAVGPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKSGVHFI 316 (477)
T ss_pred hcCCCCeEEeCCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhCCCcEE
Confidence 67999999975321100 0000 111356899999999889999999999998999999999999999999999
Q ss_pred EEEcCCCCC-cccccCchhHHHHhc-CCceeecccCcccccCCCCcccceeccCchhhhhhhhcCCceeccccccchhhh
Q 044266 304 WVVRPDITN-DAIDAYPEGFQDRVA-TRRQMVGWAPQQKVLTHPSIACFLSHCGWNSTMEGVSNGVPFLCWPYFADQFLN 381 (462)
Q Consensus 304 ~~~~~~~~~-~~~~~~~~~~~~~~~-~~v~~~~~~pq~~ll~~~~~~~~I~HgG~~sv~eal~~GvP~l~~P~~~DQ~~n 381 (462)
|+++...+. .....+|++|.++.. .++++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.|
T Consensus 317 w~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~n 396 (477)
T PLN02863 317 WCVKEPVNEESDYSNIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMAADQFVN 396 (477)
T ss_pred EEECCCcccccchhhCCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCccccchhh
Confidence 999854221 122458889988764 455667999999999999999999999999999999999999999999999999
Q ss_pred HHhHhhhheeeEEeecCCCCccCHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHhHhhcCCCcHHHHHHHHHHHHh
Q 044266 382 ESYICDIWKVGLRFNKNKNGIITREEIMKKVDQVL-EDENFKARALDLKETSLNSVREGGQSDKTFKNFVQWIKA 455 (462)
Q Consensus 382 a~~v~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ll-~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 455 (462)
|+++++.+|+|+++..+.....+.+++.++|+++| ++++||+||+++++++++++++||+|.+++++|++++..
T Consensus 397 a~~v~~~~gvG~~~~~~~~~~~~~~~v~~~v~~~m~~~~~~r~~a~~l~e~a~~Av~~gGSS~~~l~~~v~~i~~ 471 (477)
T PLN02863 397 ASLLVDELKVAVRVCEGADTVPDSDELARVFMESVSENQVERERAKELRRAALDAIKERGSSVKDLDGFVKHVVE 471 (477)
T ss_pred HHHHHHhhceeEEeccCCCCCcCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHH
Confidence 99987658999999532223468999999999999 678999999999999999999999999999999999874
No 9
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=2.9e-65 Score=500.32 Aligned_cols=439 Identities=25% Similarity=0.447 Sum_probs=328.8
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCC--CEEEEEeCCcchHHHH--HhhcCC-C-CCCCCeEEEEcCCCCCCCCCCC
Q 044266 4 RPHVLAFPYPAQGHVIPLLEISQCLVKHG--VKVTFLNTDYNHKRVV--NALGQN-N-YIGDQIKLVSIPDGMEPEGDRN 77 (462)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~l~La~~L~~rG--h~Vt~~~~~~~~~~v~--~~~~~~-~-~~~~~i~~~~i~~~~~~~~~~~ 77 (462)
|.||+++|++++||++|+++||+.|+.+| ..|||++++.+...+. +..... . ...++++|+.+|++.+......
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~ 81 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQPTTEDP 81 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCCCcccch
Confidence 67999999999999999999999999998 8899999987754221 100000 0 0123699999997764221111
Q ss_pred CHHHHHHHHHHhccHHHHHHHHHHhhc-c--CCCc-eEEEeCCCcchHHHHHHHcCCceEEEccchhHHHHHHHhHhhhh
Q 044266 78 DLGMLTKTMVRVMPEKLEELIENINRL-E--NEKI-TCVVADGSMGWVMEVAEKMKLRRAAFWPAAAGLLALSFSVQRFL 153 (462)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~l~~~l~~~-~--~~~~-Dlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~ 153 (462)
.... +...+.+.+++.++.+... . +.+| +|||+|.++.|+..+|+++|||++.|++++++.+..+++++...
T Consensus 82 ~~~~----~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~~~~~ 157 (481)
T PLN02554 82 TFQS----YIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHVQMLY 157 (481)
T ss_pred HHHH----HHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhhhhhc
Confidence 2222 2334444555555544221 0 0234 89999999999999999999999999999999999988876643
Q ss_pred cCCCcCCCCCCccccccccCCCCc-ccCcccchhhhhcCCCcchhhHHHHHHhhhhhccccEEEEcCccccchhhhc---
Q 044266 154 DDGIVDDNGTPVKQQMIQLAPTMA-AIHSSKLVWACIGDFNTQKIVFDFTIDNNETIKKAERLICNSTYDLEPGALD--- 229 (462)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~--- 229 (462)
..+..+..+.++.. ....+|+++ +++..+++ ..... +.....+.+....+.+++.+++||+.++|.....
T Consensus 158 ~~~~~~~~~~~~~~-~~v~iPgl~~pl~~~dlp-~~~~~----~~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~~~~l~ 231 (481)
T PLN02554 158 DEKKYDVSELEDSE-VELDVPSLTRPYPVKCLP-SVLLS----KEWLPLFLAQARRFREMKGILVNTVAELEPQALKFFS 231 (481)
T ss_pred cccccCccccCCCC-ceeECCCCCCCCCHHHCC-CcccC----HHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHH
Confidence 22111100111111 123578874 66666766 32222 1223444455566788999999999999975443
Q ss_pred ----cCCCccccCcccC-CCCCCCCCCCCCCCCchhhHhhccCCCCcEEEEeccCccccCHHHHHHHHHHHHhCCCCEEE
Q 044266 230 ----LIPEFLPIGPLLS-SNRLGNSAGYFWPEDSTCLKWLDQQQQNSVIYVAFGSFTVFDKEQFQELASGLELTNRPFLW 304 (462)
Q Consensus 230 ----~~p~v~~vGp~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~ 304 (462)
..|+++.|||+.. ..... ......++++.+|+++++++++|||||||+...+.+++++++.+|+..+++|||
T Consensus 232 ~~~~~~~~v~~vGpl~~~~~~~~---~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~flW 308 (481)
T PLN02554 232 GSSGDLPPVYPVGPVLHLENSGD---DSKDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALERSGHRFLW 308 (481)
T ss_pred hcccCCCCEEEeCCCcccccccc---ccccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHHcCCCeEE
Confidence 3478999999943 22111 000134568999999998889999999999888999999999999999999999
Q ss_pred EEcCCCC----------CcccccCchhHHHHhcCCceeecccCcccccCCCCcccceeccCchhhhhhhhcCCceecccc
Q 044266 305 VVRPDIT----------NDAIDAYPEGFQDRVATRRQMVGWAPQQKVLTHPSIACFLSHCGWNSTMEGVSNGVPFLCWPY 374 (462)
Q Consensus 305 ~~~~~~~----------~~~~~~~~~~~~~~~~~~v~~~~~~pq~~ll~~~~~~~~I~HgG~~sv~eal~~GvP~l~~P~ 374 (462)
+++.... .+....+|++|.++.++|+++++|+||.+||+|+++++|||||||||++||+++|||||++|+
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~l~~P~ 388 (481)
T PLN02554 309 SLRRASPNIMKEPPGEFTNLEEILPEGFLDRTKDIGKVIGWAPQVAVLAKPAIGGFVTHCGWNSILESLWFGVPMAAWPL 388 (481)
T ss_pred EEcCCcccccccccccccchhhhCChHHHHHhccCceEEeeCCHHHHhCCcccCcccccCccchHHHHHHcCCCEEecCc
Confidence 9975311 001123688999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhHHh-HhhhheeeEEeecC--------CCCccCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHhHhhcCCCcHH
Q 044266 375 FADQFLNESY-ICDIWKVGLRFNKN--------KNGIITREEIMKKVDQVLE-DENFKARALDLKETSLNSVREGGQSDK 444 (462)
Q Consensus 375 ~~DQ~~na~~-v~~~~g~g~~~~~~--------~~~~~~~~~l~~~i~~ll~-~~~~~~~a~~l~~~~~~~~~~~g~~~~ 444 (462)
++||+.||++ +++ +|+|+.+... ....+++++|+++|+++|+ |++||+||+++++++++++++||+|.+
T Consensus 389 ~~DQ~~Na~~~v~~-~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~r~~a~~l~~~~~~av~~gGss~~ 467 (481)
T PLN02554 389 YAEQKFNAFEMVEE-LGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQDSDVRKRVKEMSEKCHVALMDGGSSHT 467 (481)
T ss_pred cccchhhHHHHHHH-hCceEEeeccccccccccccCeEcHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCChHHH
Confidence 9999999954 666 7999998631 1246899999999999996 789999999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 044266 445 TFKNFVQWIKAE 456 (462)
Q Consensus 445 ~~~~~~~~~~~~ 456 (462)
++++|++++...
T Consensus 468 ~l~~lv~~~~~~ 479 (481)
T PLN02554 468 ALKKFIQDVTKN 479 (481)
T ss_pred HHHHHHHHHHhh
Confidence 999999998764
No 10
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=7.6e-65 Score=490.08 Aligned_cols=428 Identities=26% Similarity=0.474 Sum_probs=331.2
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHH-hCCCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcCC----CCCCCCCCC
Q 044266 3 RRPHVLAFPYPAQGHVIPLLEISQCLV-KHGVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIPD----GMEPEGDRN 77 (462)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~l~La~~L~-~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~----~~~~~~~~~ 77 (462)
.+.||+++|++++||++|++.||+.|+ ++|+.|||++++.+...+.+... ..+++++..+|. ++++.. .
T Consensus 4 ~~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~----~~~~i~~~~lp~p~~~glp~~~--~ 77 (481)
T PLN02992 4 TKPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFL----NSTGVDIVGLPSPDISGLVDPS--A 77 (481)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhccc----cCCCceEEECCCccccCCCCCC--c
Confidence 467999999999999999999999998 79999999999987655533211 112688988884 443111 1
Q ss_pred CHHHHHHHHHHhccHHHHHHHHHHhhccCCCceEEEeCCCcchHHHHHHHcCCceEEEccchhHHHHHHHhHhhhhcCCC
Q 044266 78 DLGMLTKTMVRVMPEKLEELIENINRLENEKITCVVADGSMGWVMEVAEKMKLRRAAFWPAAAGLLALSFSVQRFLDDGI 157 (462)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~ 157 (462)
+....+..+...+.+.++++++.+. .+|+|||+|.+.+|+..+|+++|||++.|++++++.+..+.++|.......
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~~----~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~~ 153 (481)
T PLN02992 78 HVVTKIGVIMREAVPTLRSKIAEMH----QKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKDIK 153 (481)
T ss_pred cHHHHHHHHHHHhHHHHHHHHHhcC----CCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhccccc
Confidence 2222333334455667777776642 478999999999999999999999999999999988877766654321100
Q ss_pred cCCCCCCccccccccCCCCcccCcccchhhhhcCCCcchhhHHHHHHhhhhhccccEEEEcCccccchhhhccC------
Q 044266 158 VDDNGTPVKQQMIQLAPTMAAIHSSKLVWACIGDFNTQKIVFDFTIDNNETIKKAERLICNSTYDLEPGALDLI------ 231 (462)
Q Consensus 158 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~------ 231 (462)
.+ ..... ....+|+++.++..+++ ..+..+. ......+.+....+.+++.+++||+.+||....+.+
T Consensus 154 ~~---~~~~~-~~~~iPg~~~l~~~dlp-~~~~~~~--~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~~~~ 226 (481)
T PLN02992 154 EE---HTVQR-KPLAMPGCEPVRFEDTL-DAYLVPD--EPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQDPKLL 226 (481)
T ss_pred cc---cccCC-CCcccCCCCccCHHHhh-HhhcCCC--cHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhhcccc
Confidence 00 00001 12358888888777777 3222221 123444555556677899999999999998766542
Q ss_pred -----CCccccCcccCCCCCCCCCCCCCCCCchhhHhhccCCCCcEEEEeccCccccCHHHHHHHHHHHHhCCCCEEEEE
Q 044266 232 -----PEFLPIGPLLSSNRLGNSAGYFWPEDSTCLKWLDQQQQNSVIYVAFGSFTVFDKEQFQELASGLELTNRPFLWVV 306 (462)
Q Consensus 232 -----p~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~ 306 (462)
++++.|||+....... ..++++.+||+.+++++||||||||....+.+++++++.+|+..+++|||++
T Consensus 227 ~~~~~~~v~~VGPl~~~~~~~-------~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~ 299 (481)
T PLN02992 227 GRVARVPVYPIGPLCRPIQSS-------KTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVV 299 (481)
T ss_pred ccccCCceEEecCccCCcCCC-------cchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 5799999997532111 2456799999999889999999999999999999999999999999999999
Q ss_pred cCCCCC---------------c-ccccCchhHHHHhcCCce-eecccCcccccCCCCcccceeccCchhhhhhhhcCCce
Q 044266 307 RPDITN---------------D-AIDAYPEGFQDRVATRRQ-MVGWAPQQKVLTHPSIACFLSHCGWNSTMEGVSNGVPF 369 (462)
Q Consensus 307 ~~~~~~---------------~-~~~~~~~~~~~~~~~~v~-~~~~~pq~~ll~~~~~~~~I~HgG~~sv~eal~~GvP~ 369 (462)
++..+. . ....+|++|.+++.++.. +.+|+||.+||+|+++++|||||||||++||+++||||
T Consensus 300 r~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~GVP~ 379 (481)
T PLN02992 300 RPPVDGSACSAYFSANGGETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVGGVPM 379 (481)
T ss_pred eCCcccccccccccCcccccccchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHHHcCCCE
Confidence 743110 0 022488999999876654 55999999999999999999999999999999999999
Q ss_pred eccccccchhhhHHhHhhhheeeEEeecCCCCccCHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHhHhh--cCCCcHH
Q 044266 370 LCWPYFADQFLNESYICDIWKVGLRFNKNKNGIITREEIMKKVDQVLEDE---NFKARALDLKETSLNSVR--EGGQSDK 444 (462)
Q Consensus 370 l~~P~~~DQ~~na~~v~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ll~~~---~~~~~a~~l~~~~~~~~~--~~g~~~~ 444 (462)
|++|+++||+.||+++++.+|+|++++.. +..+++++|+++|+++|.|+ ++|++|+++++++++++. +||||.+
T Consensus 380 l~~P~~~DQ~~na~~~~~~~g~gv~~~~~-~~~~~~~~l~~av~~vm~~~~g~~~r~~a~~~~~~a~~Av~~~~GGSS~~ 458 (481)
T PLN02992 380 IAWPLFAEQNMNAALLSDELGIAVRSDDP-KEVISRSKIEALVRKVMVEEEGEEMRRKVKKLRDTAEMSLSIDGGGVAHE 458 (481)
T ss_pred EecCccchhHHHHHHHHHHhCeeEEecCC-CCcccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCCCchHH
Confidence 99999999999999996337999999641 13589999999999999764 799999999999999994 5999999
Q ss_pred HHHHHHHHHHh
Q 044266 445 TFKNFVQWIKA 455 (462)
Q Consensus 445 ~~~~~~~~~~~ 455 (462)
++++|++++..
T Consensus 459 ~l~~~v~~~~~ 469 (481)
T PLN02992 459 SLCRVTKECQR 469 (481)
T ss_pred HHHHHHHHHHH
Confidence 99999998865
No 11
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=2.9e-64 Score=491.20 Aligned_cols=439 Identities=25% Similarity=0.460 Sum_probs=335.7
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCC----CEEEEEeCCcch----HHHHHhhcCCCCCCCCeEEEEcCCCCCCCC
Q 044266 3 RRPHVLAFPYPAQGHVIPLLEISQCLVKHG----VKVTFLNTDYNH----KRVVNALGQNNYIGDQIKLVSIPDGMEPEG 74 (462)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rG----h~Vt~~~~~~~~----~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~ 74 (462)
++.||+++|++++||++|++.||+.|+.+| +.|||++++.+. ..+.+.........++++|..+|++..+..
T Consensus 2 ~~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~~ 81 (480)
T PLN00164 2 AAPTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVEPPTD 81 (480)
T ss_pred CCCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCCCCCc
Confidence 456999999999999999999999999986 799999987653 233332211111112699999997643221
Q ss_pred CCCCHHHHHHHHHHhccHHHHHHHHHHhhccCCCceEEEeCCCcchHHHHHHHcCCceEEEccchhHHHHHHHhHhhhhc
Q 044266 75 DRNDLGMLTKTMVRVMPEKLEELIENINRLENEKITCVVADGSMGWVMEVAEKMKLRRAAFWPAAAGLLALSFSVQRFLD 154 (462)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~ 154 (462)
..+...++..+...+.+.++++++.+. .+++|||+|.+.+|+..+|+++|||.+.|+++++..+..++++|....
T Consensus 82 -~e~~~~~~~~~~~~~~~~l~~~L~~l~----~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~ 156 (480)
T PLN00164 82 -AAGVEEFISRYIQLHAPHVRAAIAGLS----CPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRLPALDE 156 (480)
T ss_pred -cccHHHHHHHHHHhhhHHHHHHHHhcC----CCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhhhhhcc
Confidence 223445555566677777888877641 357999999999999999999999999999999999888887664321
Q ss_pred CCCcCCCCCCccccccccCCCCcccCcccchhhhhcCCCcchhhHHHHHHhhhhhccccEEEEcCccccchhhhccC---
Q 044266 155 DGIVDDNGTPVKQQMIQLAPTMAAIHSSKLVWACIGDFNTQKIVFDFTIDNNETIKKAERLICNSTYDLEPGALDLI--- 231 (462)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~--- 231 (462)
. .+. ...... ....+||++.++..+++ .+..... ......+....+...+++.+++||+.+||......+
T Consensus 157 ~--~~~-~~~~~~-~~~~iPGlp~l~~~dlp-~~~~~~~--~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~ 229 (480)
T PLN00164 157 E--VAV-EFEEME-GAVDVPGLPPVPASSLP-APVMDKK--SPNYAWFVYHGRRFMEAAGIIVNTAAELEPGVLAAIADG 229 (480)
T ss_pred c--ccC-cccccC-cceecCCCCCCChHHCC-chhcCCC--cHHHHHHHHHHHhhhhcCEEEEechHHhhHHHHHHHHhc
Confidence 1 000 001101 12248888888888887 3332221 112233333445567899999999999997655432
Q ss_pred --------CCccccCcccCCCCCCCCCCCCCCCCchhhHhhccCCCCcEEEEeccCccccCHHHHHHHHHHHHhCCCCEE
Q 044266 232 --------PEFLPIGPLLSSNRLGNSAGYFWPEDSTCLKWLDQQQQNSVIYVAFGSFTVFDKEQFQELASGLELTNRPFL 303 (462)
Q Consensus 232 --------p~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i 303 (462)
++++.|||+....... .....++++.+||+.++++++|||||||......+++.+++.+|+..+.+||
T Consensus 230 ~~~~~~~~~~v~~vGPl~~~~~~~----~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~~s~~~fl 305 (480)
T PLN00164 230 RCTPGRPAPTVYPIGPVISLAFTP----PAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLERSGHRFL 305 (480)
T ss_pred cccccCCCCceEEeCCCccccccC----CCccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCEE
Confidence 5799999997432111 1124567899999999889999999999988899999999999999999999
Q ss_pred EEEcCCCCC--------cccccCchhHHHHhcCCceee-cccCcccccCCCCcccceeccCchhhhhhhhcCCceecccc
Q 044266 304 WVVRPDITN--------DAIDAYPEGFQDRVATRRQMV-GWAPQQKVLTHPSIACFLSHCGWNSTMEGVSNGVPFLCWPY 374 (462)
Q Consensus 304 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~v~~~-~~~pq~~ll~~~~~~~~I~HgG~~sv~eal~~GvP~l~~P~ 374 (462)
|+++..... +....+|++|.+++.++..++ +|+||.+||+|+++++|||||||||++||+++|||||++|+
T Consensus 306 Wv~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP~l~~P~ 385 (480)
T PLN00164 306 WVLRGPPAAGSRHPTDADLDELLPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMAPWPL 385 (480)
T ss_pred EEEcCCcccccccccccchhhhCChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHcCCCEEeCCc
Confidence 999853210 112247889998887776665 99999999999999999999999999999999999999999
Q ss_pred ccchhhhHHhHhhhheeeEEeecCC--CCccCHHHHHHHHHHHhcCH-----HHHHHHHHHHHHHHhHhhcCCCcHHHHH
Q 044266 375 FADQFLNESYICDIWKVGLRFNKNK--NGIITREEIMKKVDQVLEDE-----NFKARALDLKETSLNSVREGGQSDKTFK 447 (462)
Q Consensus 375 ~~DQ~~na~~v~~~~g~g~~~~~~~--~~~~~~~~l~~~i~~ll~~~-----~~~~~a~~l~~~~~~~~~~~g~~~~~~~ 447 (462)
++||+.||+++++.+|+|+.+..++ .+.+++++|.++|+++|.|+ ++|++|+++++++++++.+||||.++++
T Consensus 386 ~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~~~~a~~~gGSS~~~l~ 465 (480)
T PLN00164 386 YAEQHLNAFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKAACRKAVEEGGSSYAALQ 465 (480)
T ss_pred cccchhHHHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 9999999988765479999996421 13479999999999999753 5899999999999999999999999999
Q ss_pred HHHHHHHhhh
Q 044266 448 NFVQWIKAEA 457 (462)
Q Consensus 448 ~~~~~~~~~~ 457 (462)
+|++++..++
T Consensus 466 ~~v~~~~~~~ 475 (480)
T PLN00164 466 RLAREIRHGA 475 (480)
T ss_pred HHHHHHHhcc
Confidence 9999998764
No 12
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=3.6e-64 Score=491.01 Aligned_cols=432 Identities=28% Similarity=0.518 Sum_probs=334.6
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhC--CCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcCCCCCCCC-CCCCH
Q 044266 3 RRPHVLAFPYPAQGHVIPLLEISQCLVKH--GVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIPDGMEPEG-DRNDL 79 (462)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~-~~~~~ 79 (462)
.+.||+++|+|++||++|+++||++|+++ ||+|||++++.+...+.+... .++++|+.+|++++... ...+.
T Consensus 9 ~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~-----~~gi~fv~lp~~~p~~~~~~~~~ 83 (459)
T PLN02448 9 TSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPK-----PDNIRFATIPNVIPSELVRAADF 83 (459)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCC-----CCCEEEEECCCCCCCccccccCH
Confidence 46799999999999999999999999999 999999999998877766421 23799999998665442 22345
Q ss_pred HHHHHHHHHhccHHHHHHHHHHhhccCCCceEEEeCCCcchHHHHHHHcCCceEEEccchhHHHHHHHhHhhhhcCCCcC
Q 044266 80 GMLTKTMVRVMPEKLEELIENINRLENEKITCVVADGSMGWVMEVAEKMKLRRAAFWPAAAGLLALSFSVQRFLDDGIVD 159 (462)
Q Consensus 80 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~ 159 (462)
..++..+.+.+.+.++++++.+. .++||||+|.+++|+..+|+++|||++.|+++++..+..+.+++.....+..+
T Consensus 84 ~~~~~~~~~~~~~~~~~~l~~~~----~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~~~~ 159 (459)
T PLN02448 84 PGFLEAVMTKMEAPFEQLLDRLE----PPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQNGHFP 159 (459)
T ss_pred HHHHHHHHHHhHHHHHHHHHhcC----CCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhccCCC
Confidence 55566655566777788877642 47899999999999999999999999999999998777777665433222111
Q ss_pred CCCCCc-cccccccCCCCcccCcccchhhhhcCCCcchhhHHHHHHhhhhhccccEEEEcCccccchhhhcc-----CCC
Q 044266 160 DNGTPV-KQQMIQLAPTMAAIHSSKLVWACIGDFNTQKIVFDFTIDNNETIKKAERLICNSTYDLEPGALDL-----IPE 233 (462)
Q Consensus 160 ~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~-----~p~ 233 (462)
.. ... .......+|+++.+...+++ .+.... .....+.+........+++.+++||+.+||+...+. .++
T Consensus 160 ~~-~~~~~~~~~~~iPg~~~l~~~dlp-~~~~~~--~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~~ 235 (459)
T PLN02448 160 VE-LSESGEERVDYIPGLSSTRLSDLP-PIFHGN--SRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDALKSKFPFP 235 (459)
T ss_pred Cc-cccccCCccccCCCCCCCChHHCc-hhhcCC--chHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHHHHhhcCCc
Confidence 00 000 01112257888777777776 333221 222334444555556778899999999999874433 247
Q ss_pred ccccCcccCCCCCC-CCCCC-CCCCCchhhHhhccCCCCcEEEEeccCccccCHHHHHHHHHHHHhCCCCEEEEEcCCCC
Q 044266 234 FLPIGPLLSSNRLG-NSAGY-FWPEDSTCLKWLDQQQQNSVIYVAFGSFTVFDKEQFQELASGLELTNRPFLWVVRPDIT 311 (462)
Q Consensus 234 v~~vGp~~~~~~~~-~~~~~-~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~ 311 (462)
++.|||+....... ..... ....+.++.+|++.++++++|||||||......+.+++++.+|+..+.+|||++...
T Consensus 236 ~~~iGP~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~-- 313 (459)
T PLN02448 236 VYPIGPSIPYMELKDNSSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVARGE-- 313 (459)
T ss_pred eEEecCcccccccCCCccccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEEEcCc--
Confidence 89999997532111 00000 011234799999998889999999999988888999999999999999999987643
Q ss_pred CcccccCchhHHHHhcCCceeecccCcccccCCCCcccceeccCchhhhhhhhcCCceeccccccchhhhHHhHhhhhee
Q 044266 312 NDAIDAYPEGFQDRVATRRQMVGWAPQQKVLTHPSIACFLSHCGWNSTMEGVSNGVPFLCWPYFADQFLNESYICDIWKV 391 (462)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~v~~~~~~pq~~ll~~~~~~~~I~HgG~~sv~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~ 391 (462)
..++.++.++|+++++|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++.||+
T Consensus 314 -------~~~~~~~~~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~ 386 (459)
T PLN02448 314 -------ASRLKEICGDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWKI 386 (459)
T ss_pred -------hhhHhHhccCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccccchhhHHHHHHHhCc
Confidence 1245555567899999999999999999999999999999999999999999999999999999999986799
Q ss_pred eEEeecC--CCCccCHHHHHHHHHHHhcCH-----HHHHHHHHHHHHHHhHhhcCCCcHHHHHHHHHHHHhh
Q 044266 392 GLRFNKN--KNGIITREEIMKKVDQVLEDE-----NFKARALDLKETSLNSVREGGQSDKTFKNFVQWIKAE 456 (462)
Q Consensus 392 g~~~~~~--~~~~~~~~~l~~~i~~ll~~~-----~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 456 (462)
|+.+... +...+++++|+++|+++|+|+ ++|+||+++++++++++.+||||.+++++|++++...
T Consensus 387 G~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGss~~~l~~~v~~~~~~ 458 (459)
T PLN02448 387 GWRVKREVGEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSSDTNLDAFIRDISQG 458 (459)
T ss_pred eEEEecccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcc
Confidence 9998631 123579999999999999763 7999999999999999999999999999999998753
No 13
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=3.8e-64 Score=491.66 Aligned_cols=446 Identities=24% Similarity=0.437 Sum_probs=329.8
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCC---CEEEEEeCCcchH-HHHHhhcCCCCCCCCeEEEEcCCCCCCC-CC--
Q 044266 3 RRPHVLAFPYPAQGHVIPLLEISQCLVKHG---VKVTFLNTDYNHK-RVVNALGQNNYIGDQIKLVSIPDGMEPE-GD-- 75 (462)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rG---h~Vt~~~~~~~~~-~v~~~~~~~~~~~~~i~~~~i~~~~~~~-~~-- 75 (462)
++.||+++|+|++||++|+++||+.|+.+| +.||++++..+.. .............++++|+.+|++..+. ..
T Consensus 2 ~~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~~~~~~ 81 (475)
T PLN02167 2 KEAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQDPPPMELF 81 (475)
T ss_pred CccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCCCCcccccc
Confidence 567999999999999999999999999998 4577777543321 1111110001112369999999654221 11
Q ss_pred CCCHHHHHHHHHHhccHHHHHHHHHHhhcc---CC-CceEEEeCCCcchHHHHHHHcCCceEEEccchhHHHHHHHhHhh
Q 044266 76 RNDLGMLTKTMVRVMPEKLEELIENINRLE---NE-KITCVVADGSMGWVMEVAEKMKLRRAAFWPAAAGLLALSFSVQR 151 (462)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~-~~Dlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~ 151 (462)
.......+..+...+.+.+++.++.+.... +. +++|||+|.+.+|+..+|+++|||.+.|++++++.+..++++|.
T Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~~~~~ 161 (475)
T PLN02167 82 VKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMKYLPE 161 (475)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHHHHHH
Confidence 112222334444556666777776653210 01 45999999999999999999999999999999988888887664
Q ss_pred hhcCCCcCCCCCCc-cccccccCCCC-cccCcccchhhhhcCCCcchhhHHHHHHhhhhhccccEEEEcCccccchhhhc
Q 044266 152 FLDDGIVDDNGTPV-KQQMIQLAPTM-AAIHSSKLVWACIGDFNTQKIVFDFTIDNNETIKKAERLICNSTYDLEPGALD 229 (462)
Q Consensus 152 ~~~~~~~~~~~~~~-~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~ 229 (462)
.... ... .... .......+||+ +.++..+++ .+..... ....+....+...+++.+++||+.+||+....
T Consensus 162 ~~~~--~~~-~~~~~~~~~~~~iPgl~~~l~~~dlp-~~~~~~~----~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~ 233 (475)
T PLN02167 162 RHRK--TAS-EFDLSSGEEELPIPGFVNSVPTKVLP-PGLFMKE----SYEAWVEIAERFPEAKGILVNSFTELEPNAFD 233 (475)
T ss_pred hccc--ccc-ccccCCCCCeeECCCCCCCCChhhCc-hhhhCcc----hHHHHHHHHHhhcccCEeeeccHHHHHHHHHH
Confidence 3211 000 0000 00112357887 356666666 3222211 12334444556678999999999999987554
Q ss_pred c-------CCCccccCcccCCCCCCCCCCCCCCCCchhhHhhccCCCCcEEEEeccCccccCHHHHHHHHHHHHhCCCCE
Q 044266 230 L-------IPEFLPIGPLLSSNRLGNSAGYFWPEDSTCLKWLDQQQQNSVIYVAFGSFTVFDKEQFQELASGLELTNRPF 302 (462)
Q Consensus 230 ~-------~p~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~ 302 (462)
. .|+++.|||++........ ......+.++.+|++.++++++|||||||+.....+++.+++.+|+..+++|
T Consensus 234 ~l~~~~~~~p~v~~vGpl~~~~~~~~~-~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l~~~~~~f 312 (475)
T PLN02167 234 YFSRLPENYPPVYPVGPILSLKDRTSP-NLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQALELVGCRF 312 (475)
T ss_pred HHHhhcccCCeeEEeccccccccccCC-CCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCcE
Confidence 3 2689999999764321100 0001233679999999988999999999998889999999999999999999
Q ss_pred EEEEcCCCCC--cccccCchhHHHHhcCCceeecccCcccccCCCCcccceeccCchhhhhhhhcCCceeccccccchhh
Q 044266 303 LWVVRPDITN--DAIDAYPEGFQDRVATRRQMVGWAPQQKVLTHPSIACFLSHCGWNSTMEGVSNGVPFLCWPYFADQFL 380 (462)
Q Consensus 303 i~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~pq~~ll~~~~~~~~I~HgG~~sv~eal~~GvP~l~~P~~~DQ~~ 380 (462)
||+++..... +....+|++|.+++.+++++++|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.
T Consensus 313 lw~~~~~~~~~~~~~~~lp~~~~er~~~rg~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~ 392 (475)
T PLN02167 313 LWSIRTNPAEYASPYEPLPEGFMDRVMGRGLVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIATWPMYAEQQL 392 (475)
T ss_pred EEEEecCcccccchhhhCChHHHHHhccCeeeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEEeccccccchh
Confidence 9999753211 11235889999999899999999999999999999999999999999999999999999999999999
Q ss_pred hHHh-HhhhheeeEEeecC---C-CCccCHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHhHhhcCCCcHHHHHHHHHHHH
Q 044266 381 NESY-ICDIWKVGLRFNKN---K-NGIITREEIMKKVDQVLEDE-NFKARALDLKETSLNSVREGGQSDKTFKNFVQWIK 454 (462)
Q Consensus 381 na~~-v~~~~g~g~~~~~~---~-~~~~~~~~l~~~i~~ll~~~-~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 454 (462)
||++ +++ +|+|+.+..+ + ...+++++|+++|+++|.++ +||+||+++++++++++++||+|.+++++|++++.
T Consensus 393 na~~~~~~-~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~r~~a~~~~~~~~~av~~gGsS~~~l~~~v~~i~ 471 (475)
T PLN02167 393 NAFTMVKE-LGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGEDVPRKKVKEIAEAARKAVMDGGSSFVAVKRFIDDLL 471 (475)
T ss_pred hHHHHHHH-hCeeEEeecccccccCCcccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 9987 555 7999998642 1 13579999999999999765 89999999999999999999999999999999999
Q ss_pred hhhc
Q 044266 455 AEAS 458 (462)
Q Consensus 455 ~~~~ 458 (462)
+.+|
T Consensus 472 ~~~~ 475 (475)
T PLN02167 472 GDHS 475 (475)
T ss_pred hcCC
Confidence 8875
No 14
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=3.3e-64 Score=483.38 Aligned_cols=429 Identities=25% Similarity=0.479 Sum_probs=321.9
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCC--CEEEE--EeCCcchHHHHHhhcCCCCCCCCeEEEEcCCCCCCCCC--C-
Q 044266 4 RPHVLAFPYPAQGHVIPLLEISQCLVKHG--VKVTF--LNTDYNHKRVVNALGQNNYIGDQIKLVSIPDGMEPEGD--R- 76 (462)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~l~La~~L~~rG--h~Vt~--~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~--~- 76 (462)
+-||+++|++++||++|+++||+.|+.+| +.||+ ++++.+...+.+.........++++|..+|++.+.... .
T Consensus 3 ~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~~ 82 (451)
T PLN03004 3 EEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAVTPYSSSSTSR 82 (451)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCCCCCCCccccc
Confidence 45999999999999999999999999998 45555 55544332222211110111236999999977642221 1
Q ss_pred CCHHHHHHHHHHhccHHHHHHHHHHhhccCCCceEEEeCCCcchHHHHHHHcCCceEEEccchhHHHHHHHhHhhhhcCC
Q 044266 77 NDLGMLTKTMVRVMPEKLEELIENINRLENEKITCVVADGSMGWVMEVAEKMKLRRAAFWPAAAGLLALSFSVQRFLDDG 156 (462)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~ 156 (462)
.+....+..+...+.+.+.++++.+.. +.+++|||+|.+.+|+..+|+++|||.+.|++++++.+..++++|......
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~~~~~~ 160 (451)
T PLN03004 83 HHHESLLLEILCFSNPSVHRTLFSLSR--NFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTIDETT 160 (451)
T ss_pred cCHHHHHHHHHHhhhHHHHHHHHhcCC--CCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHhccccc
Confidence 123333434445667778888877532 134599999999999999999999999999999999999888866432110
Q ss_pred CcCCCCCCccccccccCCCCcccCcccchhhhhcCCCcchhhHHHHHHhhhhhccccEEEEcCccccchhhhccC-----
Q 044266 157 IVDDNGTPVKQQMIQLAPTMAAIHSSKLVWACIGDFNTQKIVFDFTIDNNETIKKAERLICNSTYDLEPGALDLI----- 231 (462)
Q Consensus 157 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~----- 231 (462)
+.... .......+||++.+...+++ .+..... ......+........+++.+++||+.+||....+.+
T Consensus 161 --~~~~~--~~~~~v~iPg~p~l~~~dlp-~~~~~~~--~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l~~~~~ 233 (451)
T PLN03004 161 --PGKNL--KDIPTVHIPGVPPMKGSDMP-KAVLERD--DEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAITEELC 233 (451)
T ss_pred --ccccc--ccCCeecCCCCCCCChHHCc-hhhcCCc--hHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHHHhcCC
Confidence 00000 11122367899888888888 4433221 223344555555667889999999999998655432
Q ss_pred -CCccccCcccCCCCCCCCCCCCCCCCchhhHhhccCCCCcEEEEeccCccccCHHHHHHHHHHHHhCCCCEEEEEcCCC
Q 044266 232 -PEFLPIGPLLSSNRLGNSAGYFWPEDSTCLKWLDQQQQNSVIYVAFGSFTVFDKEQFQELASGLELTNRPFLWVVRPDI 310 (462)
Q Consensus 232 -p~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~ 310 (462)
++++.|||+........ .. ...+.+|.+||+.++++++|||||||+...+.+++++++.+|+..+++|||+++...
T Consensus 234 ~~~v~~vGPl~~~~~~~~--~~-~~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r~~~ 310 (451)
T PLN03004 234 FRNIYPIGPLIVNGRIED--RN-DNKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVRNPP 310 (451)
T ss_pred CCCEEEEeeeccCccccc--cc-cchhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCc
Confidence 57999999974321110 01 123457999999998899999999999999999999999999999999999998531
Q ss_pred CCc----ccc-cCchhHHHHhcC-CceeecccCcccccCCCCcccceeccCchhhhhhhhcCCceeccccccchhhhHHh
Q 044266 311 TND----AID-AYPEGFQDRVAT-RRQMVGWAPQQKVLTHPSIACFLSHCGWNSTMEGVSNGVPFLCWPYFADQFLNESY 384 (462)
Q Consensus 311 ~~~----~~~-~~~~~~~~~~~~-~v~~~~~~pq~~ll~~~~~~~~I~HgG~~sv~eal~~GvP~l~~P~~~DQ~~na~~ 384 (462)
... ... .+|++|.+++.+ |+.+.+|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.||++
T Consensus 311 ~~~~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~DQ~~na~~ 390 (451)
T PLN03004 311 ELEKTELDLKSLLPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQRFNRVM 390 (451)
T ss_pred cccccccchhhhCChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEeccccccchhhHHH
Confidence 100 112 378999998865 55667999999999999999999999999999999999999999999999999999
Q ss_pred HhhhheeeEEeecCCCCccCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhHhhcCCCcHH
Q 044266 385 ICDIWKVGLRFNKNKNGIITREEIMKKVDQVLEDENFKARALDLKETSLNSVREGGQSDK 444 (462)
Q Consensus 385 v~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~~~~~~~~~g~~~~ 444 (462)
+++.+|+|++++.++.+.+++++|+++|+++|+|++||+||++++++.+.++++||||.+
T Consensus 391 ~~~~~g~g~~l~~~~~~~~~~e~l~~av~~vm~~~~~r~~a~~~~~~a~~Av~~GGSS~~ 450 (451)
T PLN03004 391 IVDEIKIAISMNESETGFVSSTEVEKRVQEIIGECPVRERTMAMKNAAELALTETGSSHT 450 (451)
T ss_pred HHHHhCceEEecCCcCCccCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 986579999997522235799999999999999999999999999999999999999864
No 15
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=1.6e-63 Score=482.93 Aligned_cols=445 Identities=28% Similarity=0.529 Sum_probs=327.6
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcC-----CCCCCCCC
Q 044266 1 MLRRPHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIP-----DGMEPEGD 75 (462)
Q Consensus 1 ~~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~-----~~~~~~~~ 75 (462)
|.++.||+++|++++||++|++.||+.|+.+|+.|||++++.+...+.+...........++|+.+| ++++++..
T Consensus 5 ~~~~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~~ 84 (491)
T PLN02534 5 KAKQLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPIGCE 84 (491)
T ss_pred cCCCCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCCCcc
Confidence 4456799999999999999999999999999999999999988766654322111111248999988 57765522
Q ss_pred C-CC--HHHHHHH---HHHhccHHHHHHHHHHhhccCCCceEEEeCCCcchHHHHHHHcCCceEEEccchhHHHHHHHhH
Q 044266 76 R-ND--LGMLTKT---MVRVMPEKLEELIENINRLENEKITCVVADGSMGWVMEVAEKMKLRRAAFWPAAAGLLALSFSV 149 (462)
Q Consensus 76 ~-~~--~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~ 149 (462)
. .+ ...++.. ....+.+.++++++.. . .++||||+|.+.+|+..+|+++|||.+.|++++++....++++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~-~---~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~ 160 (491)
T PLN02534 85 NLDTLPSRDLLRKFYDAVDKLQQPLERFLEQA-K---PPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNI 160 (491)
T ss_pred ccccCCcHHHHHHHHHHHHHhHHHHHHHHHhc-C---CCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHH
Confidence 1 11 1122222 2334556677776642 1 5789999999999999999999999999999998877665443
Q ss_pred hhhhcCCCcCCCCCCccccccccCCCCcc---cCcccchhhhhcCCCcchhhHHHHHHhhh-hhccccEEEEcCccccch
Q 044266 150 QRFLDDGIVDDNGTPVKQQMIQLAPTMAA---IHSSKLVWACIGDFNTQKIVFDFTIDNNE-TIKKAERLICNSTYDLEP 225 (462)
Q Consensus 150 p~~~~~~~~~~~~~~~~~~~~~~~p~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~ns~~~le~ 225 (462)
..... ... ... ......+|+++. ++..+++ ..+..... ...+...+. ....++.+++||+.+||+
T Consensus 161 ~~~~~--~~~---~~~-~~~~~~iPg~p~~~~l~~~dlp-~~~~~~~~----~~~~~~~~~~~~~~a~~vlvNTf~eLE~ 229 (491)
T PLN02534 161 RLHNA--HLS---VSS-DSEPFVVPGMPQSIEITRAQLP-GAFVSLPD----LDDVRNKMREAESTAFGVVVNSFNELEH 229 (491)
T ss_pred HHhcc--ccc---CCC-CCceeecCCCCccccccHHHCC-hhhcCccc----HHHHHHHHHhhcccCCEEEEecHHHhhH
Confidence 21111 100 111 112235778763 5555555 22211111 122222222 234577999999999998
Q ss_pred hhhccC-----CCccccCcccCCCCCCCC---CCCCC-CCCchhhHhhccCCCCcEEEEeccCccccCHHHHHHHHHHHH
Q 044266 226 GALDLI-----PEFLPIGPLLSSNRLGNS---AGYFW-PEDSTCLKWLDQQQQNSVIYVAFGSFTVFDKEQFQELASGLE 296 (462)
Q Consensus 226 ~~~~~~-----p~v~~vGp~~~~~~~~~~---~~~~~-~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~ 296 (462)
...+.+ ++++.|||+......... .+... ..+++|..||+.+++++||||||||......+++.+++.+|+
T Consensus 230 ~~l~~l~~~~~~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~ 309 (491)
T PLN02534 230 GCAEAYEKAIKKKVWCVGPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLE 309 (491)
T ss_pred HHHHHHHhhcCCcEEEECcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHH
Confidence 755432 579999999743211000 00001 123579999999998999999999999999999999999999
Q ss_pred hCCCCEEEEEcCCCCCcc--cccCchhHHHHh-cCCceeecccCcccccCCCCcccceeccCchhhhhhhhcCCceeccc
Q 044266 297 LTNRPFLWVVRPDITNDA--IDAYPEGFQDRV-ATRRQMVGWAPQQKVLTHPSIACFLSHCGWNSTMEGVSNGVPFLCWP 373 (462)
Q Consensus 297 ~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~-~~~v~~~~~~pq~~ll~~~~~~~~I~HgG~~sv~eal~~GvP~l~~P 373 (462)
..+.+|||+++....... ...+|++|.+++ +.++++.+|+||.+||+|+++++|||||||||++||+++|||||++|
T Consensus 310 ~~~~~flW~~r~~~~~~~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~P 389 (491)
T PLN02534 310 ASKKPFIWVIKTGEKHSELEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWP 389 (491)
T ss_pred hCCCCEEEEEecCccccchhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEecc
Confidence 999999999985311111 113678998775 45666779999999999999999999999999999999999999999
Q ss_pred cccchhhhHHhHhhhheeeEEeecC-------CC--C-ccCHHHHHHHHHHHhc---C--HHHHHHHHHHHHHHHhHhhc
Q 044266 374 YFADQFLNESYICDIWKVGLRFNKN-------KN--G-IITREEIMKKVDQVLE---D--ENFKARALDLKETSLNSVRE 438 (462)
Q Consensus 374 ~~~DQ~~na~~v~~~~g~g~~~~~~-------~~--~-~~~~~~l~~~i~~ll~---~--~~~~~~a~~l~~~~~~~~~~ 438 (462)
++.||+.||+++++.||+|+++..+ +. + ..++++|+++|+++|. + +++|+||++|++++++++.+
T Consensus 390 ~~~dq~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~~Av~~ 469 (491)
T PLN02534 390 LFAEQFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMARKAMEL 469 (491)
T ss_pred ccccHHHHHHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999998779999988421 10 1 4799999999999996 2 37999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHhhhccc
Q 044266 439 GGQSDKTFKNFVQWIKAEASVQ 460 (462)
Q Consensus 439 ~g~~~~~~~~~~~~~~~~~~~~ 460 (462)
||||.+++++|+++|...-|+|
T Consensus 470 GGSS~~nl~~fv~~i~~~~~~~ 491 (491)
T PLN02534 470 GGSSHINLSILIQDVLKQQSLQ 491 (491)
T ss_pred CCcHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999877765
No 16
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=2.7e-63 Score=478.96 Aligned_cols=436 Identities=26% Similarity=0.479 Sum_probs=324.7
Q ss_pred CCCCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcC----CCCCCCCC-C
Q 044266 2 LRRPHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIP----DGMEPEGD-R 76 (462)
Q Consensus 2 ~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~----~~~~~~~~-~ 76 (462)
+++.||+++|++++||++|++.||+.|+.||+.|||++++.+...+.+... ...++++++.+| ++++.+.. .
T Consensus 4 ~~~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~---~~~~~i~~~~lp~p~~dglp~~~~~~ 80 (472)
T PLN02670 4 EEVLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPS---QLSSSITLVSFPLPSVPGLPSSAESS 80 (472)
T ss_pred CCCcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhccc---cCCCCeeEEECCCCccCCCCCCcccc
Confidence 356799999999999999999999999999999999999988766653211 111368999998 66765422 1
Q ss_pred CCH----HHHHHHHHHhccHHHHHHHHHHhhccCCCceEEEeCCCcchHHHHHHHcCCceEEEccchhHHHHHHHhHhhh
Q 044266 77 NDL----GMLTKTMVRVMPEKLEELIENINRLENEKITCVVADGSMGWVMEVAEKMKLRRAAFWPAAAGLLALSFSVQRF 152 (462)
Q Consensus 77 ~~~----~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~ 152 (462)
.+. ...+....+.+.+.++++++. .+++|||+|.+..|+..+|+++|||.+.|+++++.....+++++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~ 154 (472)
T PLN02670 81 TDVPYTKQQLLKKAFDLLEPPLTTFLET------SKPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSL 154 (472)
T ss_pred cccchhhHHHHHHHHHHhHHHHHHHHHh------CCCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhh
Confidence 222 123444445566777777766 6789999999999999999999999999999999888776654332
Q ss_pred hcCCCcCCCCCCccccccccCCCCcc------cCcccchhhhhcCCCcchhhHHHHHHhhhhhccccEEEEcCccccchh
Q 044266 153 LDDGIVDDNGTPVKQQMIQLAPTMAA------IHSSKLVWACIGDFNTQKIVFDFTIDNNETIKKAERLICNSTYDLEPG 226 (462)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~p~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~ 226 (462)
...+..+ ........+|++.+ +...+++ .+.............+.+......+++.+++||+.+||..
T Consensus 155 ~~~~~~~-----~~~~~~~~~p~~~P~~~~~~~~~~dlp-~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~ 228 (472)
T PLN02670 155 MEGGDLR-----STAEDFTVVPPWVPFESNIVFRYHEVT-KYVEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPE 228 (472)
T ss_pred hhcccCC-----CccccccCCCCcCCCCccccccHHHhh-HHHhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHhHH
Confidence 2222111 11111112333311 3334555 3332211111122233344445677899999999999988
Q ss_pred hhccC-----CCccccCcccCCC-CCCCCCCCCCCCCchhhHhhccCCCCcEEEEeccCccccCHHHHHHHHHHHHhCCC
Q 044266 227 ALDLI-----PEFLPIGPLLSSN-RLGNSAGYFWPEDSTCLKWLDQQQQNSVIYVAFGSFTVFDKEQFQELASGLELTNR 300 (462)
Q Consensus 227 ~~~~~-----p~v~~vGp~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~ 300 (462)
..+.+ ++++.|||+.... ....+.....+.++++.+|||++++++||||||||......+++++++.+|+.+++
T Consensus 229 ~l~~l~~~~~~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~ 308 (472)
T PLN02670 229 WFDLLSDLYRKPIIPIGFLPPVIEDDEEDDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKSET 308 (472)
T ss_pred HHHHHHHhhCCCeEEEecCCccccccccccccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHCCC
Confidence 66553 5799999997531 11100000001225799999999889999999999999999999999999999999
Q ss_pred CEEEEEcCCCCC--cccccCchhHHHHhcCCcee-ecccCcccccCCCCcccceeccCchhhhhhhhcCCceeccccccc
Q 044266 301 PFLWVVRPDITN--DAIDAYPEGFQDRVATRRQM-VGWAPQQKVLTHPSIACFLSHCGWNSTMEGVSNGVPFLCWPYFAD 377 (462)
Q Consensus 301 ~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~-~~~~pq~~ll~~~~~~~~I~HgG~~sv~eal~~GvP~l~~P~~~D 377 (462)
+|||++...... .....+|++|.+++.++..+ .+|+||.+||+|+++++|||||||||++||+++|||||++|+++|
T Consensus 309 ~FlWv~r~~~~~~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~D 388 (472)
T PLN02670 309 PFFWVLRNEPGTTQNALEMLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVLNE 388 (472)
T ss_pred CEEEEEcCCcccccchhhcCChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCcchhc
Confidence 999999853111 11235899999998877766 599999999999999999999999999999999999999999999
Q ss_pred hhhhHHhHhhhheeeEEeecCC-CCccCHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHhHhhcCCCcHHHHHHHHHHH
Q 044266 378 QFLNESYICDIWKVGLRFNKNK-NGIITREEIMKKVDQVLEDE---NFKARALDLKETSLNSVREGGQSDKTFKNFVQWI 453 (462)
Q Consensus 378 Q~~na~~v~~~~g~g~~~~~~~-~~~~~~~~l~~~i~~ll~~~---~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 453 (462)
|+.||+++++ +|+|+++...+ .+.+++++|+++|+++|.|+ +||+||+++++.+++ .+...+.++.|++.+
T Consensus 389 Q~~Na~~v~~-~g~Gv~l~~~~~~~~~~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~~----~~~~~~~~~~~~~~l 463 (472)
T PLN02670 389 QGLNTRLLHG-KKLGLEVPRDERDGSFTSDSVAESVRLAMVDDAGEEIRDKAKEMRNLFGD----MDRNNRYVDELVHYL 463 (472)
T ss_pred cHHHHHHHHH-cCeeEEeeccccCCcCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhC----cchhHHHHHHHHHHH
Confidence 9999999998 69999996422 23589999999999999876 799999999999997 567778888888887
Q ss_pred Hhhh
Q 044266 454 KAEA 457 (462)
Q Consensus 454 ~~~~ 457 (462)
..-+
T Consensus 464 ~~~~ 467 (472)
T PLN02670 464 RENR 467 (472)
T ss_pred HHhc
Confidence 7654
No 17
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=6.1e-63 Score=484.68 Aligned_cols=437 Identities=30% Similarity=0.521 Sum_probs=318.0
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhcCC----CCCCCCeEEEEcC---CCCCCCCCC
Q 044266 4 RPHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNALGQN----NYIGDQIKLVSIP---DGMEPEGDR 76 (462)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~----~~~~~~i~~~~i~---~~~~~~~~~ 76 (462)
+.||+++|+|+.||++|++.||+.|+.|||+|||++++.+...+++.+... ......+.+..+| ++++.+...
T Consensus 5 ~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~g~e~ 84 (482)
T PLN03007 5 KLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPEGCEN 84 (482)
T ss_pred CcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCCCccc
Confidence 569999999999999999999999999999999999999887776553211 0111134555555 355543211
Q ss_pred C---------CHHHHHHHHHHhccHHHHHHHHH-HhhccCCCceEEEeCCCcchHHHHHHHcCCceEEEccchhHHHHHH
Q 044266 77 N---------DLGMLTKTMVRVMPEKLEELIEN-INRLENEKITCVVADGSMGWVMEVAEKMKLRRAAFWPAAAGLLALS 146 (462)
Q Consensus 77 ~---------~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~~~~Dlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~ 146 (462)
. ....++..+.... ..+.+.++. ++. .+|||||+|.+++|+..+|+++|||.+.|++++++....+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~l~~---~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~~~ 160 (482)
T PLN03007 85 VDFITSNNNDDSGDLFLKFLFST-KYFKDQLEKLLET---TRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLCAS 160 (482)
T ss_pred ccccccccccchHHHHHHHHHHH-HHHHHHHHHHHhc---CCCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHHHH
Confidence 1 1223333333222 223222222 222 6899999999999999999999999999999998877666
Q ss_pred HhHhhhhcCCCcCCCCCCccccccccCCCCcc---cCcccchhhhhcCCCcchhhHHHHHHhhhhhccccEEEEcCcccc
Q 044266 147 FSVQRFLDDGIVDDNGTPVKQQMIQLAPTMAA---IHSSKLVWACIGDFNTQKIVFDFTIDNNETIKKAERLICNSTYDL 223 (462)
Q Consensus 147 ~~~p~~~~~~~~~~~~~~~~~~~~~~~p~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~l 223 (462)
+++....+... .+... ....+|+++. ++..+++ . ......+...+....+...+++.+++||+.++
T Consensus 161 ~~~~~~~~~~~-----~~~~~-~~~~~pg~p~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~l 229 (482)
T PLN03007 161 YCIRVHKPQKK-----VASSS-EPFVIPDLPGDIVITEEQIN-D----ADEESPMGKFMKEVRESEVKSFGVLVNSFYEL 229 (482)
T ss_pred HHHHhcccccc-----cCCCC-ceeeCCCCCCccccCHHhcC-C----CCCchhHHHHHHHHHhhcccCCEEEEECHHHH
Confidence 54432111000 01000 1113666652 2222222 1 11112234444455556788899999999999
Q ss_pred chhhhccC-----CCccccCcccCCCCCC--CC-CC-CCCCCCchhhHhhccCCCCcEEEEeccCccccCHHHHHHHHHH
Q 044266 224 EPGALDLI-----PEFLPIGPLLSSNRLG--NS-AG-YFWPEDSTCLKWLDQQQQNSVIYVAFGSFTVFDKEQFQELASG 294 (462)
Q Consensus 224 e~~~~~~~-----p~v~~vGp~~~~~~~~--~~-~~-~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a 294 (462)
|.+..+.+ .++++|||+....... .. .+ ..+..++++.+|++.++++++|||||||+.....+.+.+++.+
T Consensus 230 e~~~~~~~~~~~~~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~~~ 309 (482)
T PLN03007 230 ESAYADFYKSFVAKRAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIAAG 309 (482)
T ss_pred HHHHHHHHHhccCCCEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHHHH
Confidence 98756554 4699999975432110 00 00 1122357799999999889999999999988888999999999
Q ss_pred HHhCCCCEEEEEcCCCCC-cccccCchhHHHHh-cCCceeecccCcccccCCCCcccceeccCchhhhhhhhcCCceecc
Q 044266 295 LELTNRPFLWVVRPDITN-DAIDAYPEGFQDRV-ATRRQMVGWAPQQKVLTHPSIACFLSHCGWNSTMEGVSNGVPFLCW 372 (462)
Q Consensus 295 ~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~-~~~v~~~~~~pq~~ll~~~~~~~~I~HgG~~sv~eal~~GvP~l~~ 372 (462)
|+..+++|||+++..... +....+|++|.++. +.|+++.+|+||.+||+|+++++|||||||||++||+++|||||++
T Consensus 310 l~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~v~~ 389 (482)
T PLN03007 310 LEGSGQNFIWVVRKNENQGEKEEWLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLPMVTW 389 (482)
T ss_pred HHHCCCCEEEEEecCCcccchhhcCCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHcCCCeeec
Confidence 999999999999864221 11235788998876 5677778999999999999999999999999999999999999999
Q ss_pred ccccchhhhHHhHhhhheeeEEeecC-----CCCccCHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHhHhhcCCCcHH
Q 044266 373 PYFADQFLNESYICDIWKVGLRFNKN-----KNGIITREEIMKKVDQVLEDE---NFKARALDLKETSLNSVREGGQSDK 444 (462)
Q Consensus 373 P~~~DQ~~na~~v~~~~g~g~~~~~~-----~~~~~~~~~l~~~i~~ll~~~---~~~~~a~~l~~~~~~~~~~~g~~~~ 444 (462)
|+++||+.||+++++.+++|+.+... +...+++++|+++|+++|.|+ +||+||+++++.+++++.+||+|.+
T Consensus 390 P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~~~r~~a~~~~~~a~~a~~~gGsS~~ 469 (482)
T PLN03007 390 PVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGEEAEERRLRAKKLAEMAKAAVEEGGSSFN 469 (482)
T ss_pred cchhhhhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhCCCcHHH
Confidence 99999999999987545666665311 124689999999999999887 8999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 044266 445 TFKNFVQWIKA 455 (462)
Q Consensus 445 ~~~~~~~~~~~ 455 (462)
++++|++.+.+
T Consensus 470 ~l~~~v~~~~~ 480 (482)
T PLN03007 470 DLNKFMEELNS 480 (482)
T ss_pred HHHHHHHHHHh
Confidence 99999999875
No 18
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=6.4e-63 Score=473.78 Aligned_cols=432 Identities=25% Similarity=0.446 Sum_probs=329.3
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhC-CCEEEEEeCCcchHHHH-HhhcCCCCCCCCeEEEEcCCCCCCC--CCCCCH
Q 044266 4 RPHVLAFPYPAQGHVIPLLEISQCLVKH-GVKVTFLNTDYNHKRVV-NALGQNNYIGDQIKLVSIPDGMEPE--GDRNDL 79 (462)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~l~La~~L~~r-Gh~Vt~~~~~~~~~~v~-~~~~~~~~~~~~i~~~~i~~~~~~~--~~~~~~ 79 (462)
+.||+++|+|++||++|++.||+.|+.+ |..|||++++.+...+. +.........+++++..+|.....+ ....+.
T Consensus 3 ~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~l~~~~~~~ 82 (470)
T PLN03015 3 QPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAAARTTCQITEIPSVDVDNLVEPDATI 82 (470)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccccCCCceEEEECCCCccccCCCCCccH
Confidence 4699999999999999999999999976 99999999887654331 1111110011259999998543221 111133
Q ss_pred HHHHHHHHHhccHHHHHHHHHHhhccCCCceEEEeCCCcchHHHHHHHcCCc-eEEEccchhHHHHHHHhHhhhhcCCCc
Q 044266 80 GMLTKTMVRVMPEKLEELIENINRLENEKITCVVADGSMGWVMEVAEKMKLR-RAAFWPAAAGLLALSFSVQRFLDDGIV 158 (462)
Q Consensus 80 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~~~~~~A~~lgiP-~v~~~~~~~~~~~~~~~~p~~~~~~~~ 158 (462)
...+..+.+.+.+.++++++.+. .+++|||+|.+.+|+..+|+++||| .+.|++++++....++++|.... ..
T Consensus 83 ~~~~~~~~~~~~~~~~~~l~~l~----~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~~--~~ 156 (470)
T PLN03015 83 FTKMVVKMRAMKPAVRDAVKSMK----RKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLDT--VV 156 (470)
T ss_pred HHHHHHHHHhchHHHHHHHHhcC----CCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhhc--cc
Confidence 33344445567888888887753 3689999999999999999999999 58888888888777777665321 11
Q ss_pred CCCCCCccccccccCCCCcccCcccchhhhhcCCCcchhhHHHHHHhhhhhccccEEEEcCccccchhhhccC-------
Q 044266 159 DDNGTPVKQQMIQLAPTMAAIHSSKLVWACIGDFNTQKIVFDFTIDNNETIKKAERLICNSTYDLEPGALDLI------- 231 (462)
Q Consensus 159 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~------- 231 (462)
... ...... ...+||++.+...+++ ..+.++. .. ....+.+..+...+++.+++||+.+||......+
T Consensus 157 ~~~-~~~~~~-~~~vPg~p~l~~~dlp-~~~~~~~-~~-~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~~~~l~~~~~~~ 231 (470)
T PLN03015 157 EGE-YVDIKE-PLKIPGCKPVGPKELM-ETMLDRS-DQ-QYKECVRSGLEVPMSDGVLVNTWEELQGNTLAALREDMELN 231 (470)
T ss_pred ccc-cCCCCC-eeeCCCCCCCChHHCC-HhhcCCC-cH-HHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhhcccc
Confidence 110 001011 2358999888888888 3332222 11 1223334445578899999999999997655433
Q ss_pred ----CCccccCcccCCCCCCCCCCCCCCCCchhhHhhccCCCCcEEEEeccCccccCHHHHHHHHHHHHhCCCCEEEEEc
Q 044266 232 ----PEFLPIGPLLSSNRLGNSAGYFWPEDSTCLKWLDQQQQNSVIYVAFGSFTVFDKEQFQELASGLELTNRPFLWVVR 307 (462)
Q Consensus 232 ----p~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~ 307 (462)
++++.|||+...... ...++++.+|||++++++||||||||......+++++++.+|+..+++|||+++
T Consensus 232 ~~~~~~v~~VGPl~~~~~~-------~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~FlWv~r 304 (470)
T PLN03015 232 RVMKVPVYPIGPIVRTNVH-------VEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFVWVLR 304 (470)
T ss_pred cccCCceEEecCCCCCccc-------ccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEEEEEe
Confidence 569999999742110 123457999999998899999999999999999999999999999999999997
Q ss_pred CCCC--------Cc-ccccCchhHHHHhcCCcee-ecccCcccccCCCCcccceeccCchhhhhhhhcCCceeccccccc
Q 044266 308 PDIT--------ND-AIDAYPEGFQDRVATRRQM-VGWAPQQKVLTHPSIACFLSHCGWNSTMEGVSNGVPFLCWPYFAD 377 (462)
Q Consensus 308 ~~~~--------~~-~~~~~~~~~~~~~~~~v~~-~~~~pq~~ll~~~~~~~~I~HgG~~sv~eal~~GvP~l~~P~~~D 377 (462)
.... .+ ....+|++|.+++.++..+ .+|+||.+||+|+++++|||||||||++||+++|||||++|+++|
T Consensus 305 ~~~~~~~~~~~~~~~~~~~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~P~~~D 384 (470)
T PLN03015 305 RPASYLGASSSDDDQVSASLPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWPLYAE 384 (470)
T ss_pred cCccccccccccccchhhcCChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEEecccccc
Confidence 4211 01 1225889999998877755 599999999999999999999999999999999999999999999
Q ss_pred hhhhHHhHhhhheeeEEeec-CCCCccCHHHHHHHHHHHhc---C--HHHHHHHHHHHHHHHhHhhcCCCcHHHHHHHHH
Q 044266 378 QFLNESYICDIWKVGLRFNK-NKNGIITREEIMKKVDQVLE---D--ENFKARALDLKETSLNSVREGGQSDKTFKNFVQ 451 (462)
Q Consensus 378 Q~~na~~v~~~~g~g~~~~~-~~~~~~~~~~l~~~i~~ll~---~--~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 451 (462)
|+.||+++++.+|+|+++.. .+...+++++|+++|+++|. + +++|+||+++++++++++++||||.+++++|++
T Consensus 385 Q~~na~~~~~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~Av~eGGSS~~nl~~~~~ 464 (470)
T PLN03015 385 QWMNATLLTEEIGVAVRTSELPSEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSERAWSHGGSSYNSLFEWAK 464 (470)
T ss_pred hHHHHHHHHHHhCeeEEecccccCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 99999999655899999952 11246899999999999994 2 379999999999999999999999999999998
Q ss_pred HH
Q 044266 452 WI 453 (462)
Q Consensus 452 ~~ 453 (462)
.+
T Consensus 465 ~~ 466 (470)
T PLN03015 465 RC 466 (470)
T ss_pred hc
Confidence 86
No 19
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=4e-63 Score=473.80 Aligned_cols=422 Identities=25% Similarity=0.422 Sum_probs=319.6
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcC--CCCCCCCCC-CC-
Q 044266 3 RRPHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIP--DGMEPEGDR-ND- 78 (462)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~--~~~~~~~~~-~~- 78 (462)
.+.||+++|++++||++|++.||+.|+.+|+.|||++++.+...+.+. ........+.+..+| ++++.+... .+
T Consensus 4 ~~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~--~~~~~~~~v~~~~~p~~~glp~g~e~~~~~ 81 (453)
T PLN02764 4 LKFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHL--NLFPHNIVFRSVTVPHVDGLPVGTETVSEI 81 (453)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhccc--ccCCCCceEEEEECCCcCCCCCcccccccC
Confidence 367999999999999999999999999999999999999876655442 111111237777777 666655221 11
Q ss_pred ---HHHHHHHHHHhccHHHHHHHHHHhhccCCCceEEEeCCCcchHHHHHHHcCCceEEEccchhHHHHHHHhHhhhhcC
Q 044266 79 ---LGMLTKTMVRVMPEKLEELIENINRLENEKITCVVADGSMGWVMEVAEKMKLRRAAFWPAAAGLLALSFSVQRFLDD 155 (462)
Q Consensus 79 ---~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~ 155 (462)
....+....+.+.+.++++++. .++||||+| +..|+..+|+++|||.+.|+++++..+..++. + .
T Consensus 82 ~~~~~~~~~~a~~~~~~~~~~~l~~------~~~~~iV~D-~~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-~----~ 149 (453)
T PLN02764 82 PVTSADLLMSAMDLTRDQVEVVVRA------VEPDLIFFD-FAHWIPEVARDFGLKTVKYVVVSASTIASMLV-P----G 149 (453)
T ss_pred ChhHHHHHHHHHHHhHHHHHHHHHh------CCCCEEEEC-CchhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-c----c
Confidence 1122222333455667777766 678999999 57899999999999999999999987777652 1 1
Q ss_pred CCcCCCCCCccccccccCCCCcc----cCcccchhhhhc-CC-CcchhhHHHHHHhhhhhccccEEEEcCccccchhhhc
Q 044266 156 GIVDDNGTPVKQQMIQLAPTMAA----IHSSKLVWACIG-DF-NTQKIVFDFTIDNNETIKKAERLICNSTYDLEPGALD 229 (462)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~p~~~~----~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~ 229 (462)
+..+ ...|+++. ++..+++. +.. .. .........+.+..+...+++.+++||+.+||....+
T Consensus 150 ~~~~-----------~~~pglp~~~v~l~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~ 217 (453)
T PLN02764 150 GELG-----------VPPPGYPSSKVLLRKQDAYT-MKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCD 217 (453)
T ss_pred ccCC-----------CCCCCCCCCcccCcHhhCcc-hhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHH
Confidence 1100 12356652 34444442 211 11 1111223333444355678889999999999987665
Q ss_pred cC-----CCccccCcccCCCCCCCCCCCCCCCCchhhHhhccCCCCcEEEEeccCccccCHHHHHHHHHHHHhCCCCEEE
Q 044266 230 LI-----PEFLPIGPLLSSNRLGNSAGYFWPEDSTCLKWLDQQQQNSVIYVAFGSFTVFDKEQFQELASGLELTNRPFLW 304 (462)
Q Consensus 230 ~~-----p~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~ 304 (462)
.+ ++++.|||+....... ...++++.+|||++++++||||||||......+++.+++.+|+..+.+|+|
T Consensus 218 ~~~~~~~~~v~~VGPL~~~~~~~------~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflw 291 (453)
T PLN02764 218 YIEKHCRKKVLLTGPVFPEPDKT------RELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLV 291 (453)
T ss_pred HHHhhcCCcEEEeccCccCcccc------ccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEE
Confidence 54 5799999997532110 123568999999999999999999999889999999999999999999999
Q ss_pred EEcCCCCC-cccccCchhHHHHhcCCceee-cccCcccccCCCCcccceeccCchhhhhhhhcCCceeccccccchhhhH
Q 044266 305 VVRPDITN-DAIDAYPEGFQDRVATRRQMV-GWAPQQKVLTHPSIACFLSHCGWNSTMEGVSNGVPFLCWPYFADQFLNE 382 (462)
Q Consensus 305 ~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~-~~~pq~~ll~~~~~~~~I~HgG~~sv~eal~~GvP~l~~P~~~DQ~~na 382 (462)
+++..... .....+|++|++++.++..++ +|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.||
T Consensus 292 v~r~~~~~~~~~~~lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na 371 (453)
T PLN02764 292 AVKPPRGSSTIQEALPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVLNT 371 (453)
T ss_pred EEeCCCCCcchhhhCCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccchHHHH
Confidence 99853211 123468999999987776655 9999999999999999999999999999999999999999999999999
Q ss_pred HhHhhhheeeEEeecCCCCccCHHHHHHHHHHHhcCH-----HHHHHHHHHHHHHHhHhhcCCCcHHHHHHHHHHHHhhh
Q 044266 383 SYICDIWKVGLRFNKNKNGIITREEIMKKVDQVLEDE-----NFKARALDLKETSLNSVREGGQSDKTFKNFVQWIKAEA 457 (462)
Q Consensus 383 ~~v~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ll~~~-----~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 457 (462)
+++++.+|+|+.+..++.+.+++++|+++|+++|+++ ++|++++++++++++ +|+|.+++++|++++...+
T Consensus 372 ~~l~~~~g~gv~~~~~~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~~----~GSS~~~l~~lv~~~~~~~ 447 (453)
T PLN02764 372 RLLSDELKVSVEVAREETGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLAS----PGLLTGYVDNFIESLQDLV 447 (453)
T ss_pred HHHHHHhceEEEeccccCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHhc
Confidence 9997557999998542113689999999999999764 499999999999965 8999999999999999877
Q ss_pred ccc
Q 044266 458 SVQ 460 (462)
Q Consensus 458 ~~~ 460 (462)
+.+
T Consensus 448 ~~~ 450 (453)
T PLN02764 448 SGT 450 (453)
T ss_pred ccc
Confidence 543
No 20
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=2.6e-63 Score=478.17 Aligned_cols=414 Identities=23% Similarity=0.423 Sum_probs=308.6
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEc--C--CCCCCCCC-
Q 044266 1 MLRRPHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSI--P--DGMEPEGD- 75 (462)
Q Consensus 1 ~~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i--~--~~~~~~~~- 75 (462)
|..+.||+++|+++.||++|+++||+.|+++||+|||++++.+...+.+... ...++++..+ + ++++.+..
T Consensus 1 ~~~~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~a----~~~~i~~~~l~~p~~dgLp~g~~~ 76 (442)
T PLN02208 1 MEPKFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHNL----FPDSIVFHPLTIPPVNGLPAGAET 76 (442)
T ss_pred CCCCCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhcccC----CCCceEEEEeCCCCccCCCCCccc
Confidence 6678899999999999999999999999999999999999988776654321 1124566654 3 45555422
Q ss_pred CCCHHHHHH-HH---HHhccHHHHHHHHHHhhccCCCceEEEeCCCcchHHHHHHHcCCceEEEccchhHHHHHHHhHhh
Q 044266 76 RNDLGMLTK-TM---VRVMPEKLEELIENINRLENEKITCVVADGSMGWVMEVAEKMKLRRAAFWPAAAGLLALSFSVQR 151 (462)
Q Consensus 76 ~~~~~~~~~-~~---~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~ 151 (462)
..+....+. .+ ...+.+.++++++. .++||||+| ++.|+..+|+++|||++.|++++++... +++++.
T Consensus 77 ~~~l~~~l~~~~~~~~~~~~~~l~~~L~~------~~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~ 148 (442)
T PLN02208 77 TSDIPISMDNLLSEALDLTRDQVEAAVRA------LRPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPG 148 (442)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhh------CCCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCc
Confidence 212221111 22 23334445555544 789999999 6789999999999999999999987654 444331
Q ss_pred hhcCCCcCCCCCCccccccccCCCCcc----cCcccchhhhhcCCCcchhhHHHHHHhhhhhccccEEEEcCccccchhh
Q 044266 152 FLDDGIVDDNGTPVKQQMIQLAPTMAA----IHSSKLVWACIGDFNTQKIVFDFTIDNNETIKKAERLICNSTYDLEPGA 227 (462)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~p~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~ 227 (462)
+..+ ..+|+++. ++..+++ .+ . .....+.....+..+...+++.+++||+.+||...
T Consensus 149 ----~~~~-----------~~~pglp~~~~~~~~~~~~-~~--~-~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~ 209 (442)
T PLN02208 149 ----GKLG-----------VPPPGYPSSKVLFRENDAH-AL--A-TLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKF 209 (442)
T ss_pred ----cccC-----------CCCCCCCCcccccCHHHcC-cc--c-ccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHH
Confidence 1000 01356553 2333444 11 1 11111222222223456788999999999999765
Q ss_pred hcc-----CCCccccCcccCCCCCCCCCCCCCCCCchhhHhhccCCCCcEEEEeccCccccCHHHHHHHHHHHHhCCCCE
Q 044266 228 LDL-----IPEFLPIGPLLSSNRLGNSAGYFWPEDSTCLKWLDQQQQNSVIYVAFGSFTVFDKEQFQELASGLELTNRPF 302 (462)
Q Consensus 228 ~~~-----~p~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~ 302 (462)
.+. .|+++.|||++...... .+.++++.+|||.++++++|||||||....+.+.+.+++.+++..+.++
T Consensus 210 ~~~~~~~~~~~v~~vGpl~~~~~~~------~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf 283 (442)
T PLN02208 210 CDYISRQYHKKVLLTGPMFPEPDTS------KPLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPF 283 (442)
T ss_pred HHHHHhhcCCCEEEEeecccCcCCC------CCCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcE
Confidence 543 37899999998643211 1346789999999988999999999999889999999999988889999
Q ss_pred EEEEcCCCCC-cccccCchhHHHHhcC-CceeecccCcccccCCCCcccceeccCchhhhhhhhcCCceeccccccchhh
Q 044266 303 LWVVRPDITN-DAIDAYPEGFQDRVAT-RRQMVGWAPQQKVLTHPSIACFLSHCGWNSTMEGVSNGVPFLCWPYFADQFL 380 (462)
Q Consensus 303 i~~~~~~~~~-~~~~~~~~~~~~~~~~-~v~~~~~~pq~~ll~~~~~~~~I~HgG~~sv~eal~~GvP~l~~P~~~DQ~~ 380 (462)
+|+.+...+. .....+|++|.+++.+ |+.+.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.
T Consensus 284 ~wv~r~~~~~~~~~~~lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~ 363 (442)
T PLN02208 284 LIAVKPPRGSSTVQEGLPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVL 363 (442)
T ss_pred EEEEeCCCcccchhhhCCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHH
Confidence 9998854211 1224589999988754 5556699999999999999999999999999999999999999999999999
Q ss_pred hHHhHhhhheeeEEeecCCCCccCHHHHHHHHHHHhcCH-----HHHHHHHHHHHHHHhHhhcCCCcHHHHHHHHHHHHh
Q 044266 381 NESYICDIWKVGLRFNKNKNGIITREEIMKKVDQVLEDE-----NFKARALDLKETSLNSVREGGQSDKTFKNFVQWIKA 455 (462)
Q Consensus 381 na~~v~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ll~~~-----~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 455 (462)
||+++++.+|+|+++..++.+.+++++|+++|+++|+|+ ++|++|+++++++.+ +|+|.+++++|++++.+
T Consensus 364 na~~~~~~~g~gv~~~~~~~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~~----~gsS~~~l~~~v~~l~~ 439 (442)
T PLN02208 364 FTRLMTEEFEVSVEVSREKTGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILVS----PGLLTGYVDKFVEELQE 439 (442)
T ss_pred HHHHHHHHhceeEEeccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHhc----CCcHHHHHHHHHHHHHH
Confidence 999877657999999642223489999999999999764 499999999999854 78999999999999854
No 21
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=6.5e-62 Score=468.98 Aligned_cols=416 Identities=26% Similarity=0.455 Sum_probs=309.4
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcC----CCCCCCCC-
Q 044266 1 MLRRPHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIP----DGMEPEGD- 75 (462)
Q Consensus 1 ~~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~----~~~~~~~~- 75 (462)
|..+.||+++|+|++||++|+++||+.|+++|++|||++++.+...+.+... ..+++.|..++ ++++.+..
T Consensus 1 ~~~~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~~----~~~~i~~~~i~lP~~dGLP~g~e~ 76 (446)
T PLN00414 1 MGSKFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLNL----FPDSIVFEPLTLPPVDGLPFGAET 76 (446)
T ss_pred CCCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhccccc----CCCceEEEEecCCCcCCCCCcccc
Confidence 6778899999999999999999999999999999999999988766654321 11257885554 56665422
Q ss_pred CCCHHH-HHHHHH---HhccHHHHHHHHHHhhccCCCceEEEeCCCcchHHHHHHHcCCceEEEccchhHHHHHHHhHhh
Q 044266 76 RNDLGM-LTKTMV---RVMPEKLEELIENINRLENEKITCVVADGSMGWVMEVAEKMKLRRAAFWPAAAGLLALSFSVQR 151 (462)
Q Consensus 76 ~~~~~~-~~~~~~---~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~ 151 (462)
..++.. ....+. ..+.+.++++++. .+|||||+| +.+|+..+|+++|||++.|+++++.....+++ +.
T Consensus 77 ~~~l~~~~~~~~~~a~~~l~~~l~~~L~~------~~p~cVV~D-~~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~-~~ 148 (446)
T PLN00414 77 ASDLPNSTKKPIFDAMDLLRDQIEAKVRA------LKPDLIFFD-FVHWVPEMAKEFGIKSVNYQIISAACVAMVLA-PR 148 (446)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHhc------CCCeEEEEC-CchhHHHHHHHhCCCEEEEecHHHHHHHHHhC-cH
Confidence 222211 111222 2333344444433 688999999 58899999999999999999999988777665 21
Q ss_pred hhcCCCcCCCCCCccccccccCCCCcc----cCcccchh-hhhcCCCcchhhHHHHHHhhhhhccccEEEEcCccccchh
Q 044266 152 FLDDGIVDDNGTPVKQQMIQLAPTMAA----IHSSKLVW-ACIGDFNTQKIVFDFTIDNNETIKKAERLICNSTYDLEPG 226 (462)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~p~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~ 226 (462)
. ..+ ..+|+++. +...+... .++. . ....+.+..+...+++.+++||+.+||..
T Consensus 149 ~-~~~--------------~~~pg~p~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~vlvNTf~eLE~~ 207 (446)
T PLN00414 149 A-ELG--------------FPPPDYPLSKVALRGHDANVCSLFA-N-----SHELFGLITKGLKNCDVVSIRTCVELEGN 207 (446)
T ss_pred h-hcC--------------CCCCCCCCCcCcCchhhcccchhhc-c-----cHHHHHHHHHhhccCCEEEEechHHHHHH
Confidence 0 000 01244432 11111110 1111 1 11333344456678899999999999987
Q ss_pred hhccC-----CCccccCcccCCCCCCCCCCCCCCCCchhhHhhccCCCCcEEEEeccCccccCHHHHHHHHHHHHhCCCC
Q 044266 227 ALDLI-----PEFLPIGPLLSSNRLGNSAGYFWPEDSTCLKWLDQQQQNSVIYVAFGSFTVFDKEQFQELASGLELTNRP 301 (462)
Q Consensus 227 ~~~~~-----p~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~ 301 (462)
..+.+ ++++.|||+....... . . ...++++.+|||++++++||||||||......+++.+++.+|+..+.+
T Consensus 208 ~~~~~~~~~~~~v~~VGPl~~~~~~~-~-~--~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~ 283 (446)
T PLN00414 208 LCDFIERQCQRKVLLTGPMLPEPQNK-S-G--KPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLP 283 (446)
T ss_pred HHHHHHHhcCCCeEEEcccCCCcccc-c-C--cccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCC
Confidence 66543 4699999997532111 0 0 123457999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCC-cccccCchhHHHHhcCCceee-cccCcccccCCCCcccceeccCchhhhhhhhcCCceeccccccchh
Q 044266 302 FLWVVRPDITN-DAIDAYPEGFQDRVATRRQMV-GWAPQQKVLTHPSIACFLSHCGWNSTMEGVSNGVPFLCWPYFADQF 379 (462)
Q Consensus 302 ~i~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~-~~~pq~~ll~~~~~~~~I~HgG~~sv~eal~~GvP~l~~P~~~DQ~ 379 (462)
|+|++...... +....+|++|.+++.++..++ +|+||.+||+|+++++|||||||||++||+++|||||++|++.||+
T Consensus 284 Flwvvr~~~~~~~~~~~lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~ 363 (446)
T PLN00414 284 FLIAVMPPKGSSTVQEALPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQV 363 (446)
T ss_pred eEEEEecCCCcccchhhCChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchH
Confidence 99999764211 123468999999998888776 9999999999999999999999999999999999999999999999
Q ss_pred hhHHhHhhhheeeEEeecCCCCccCHHHHHHHHHHHhcCH-----HHHHHHHHHHHHHHhHhhcCCCcHHHHHHHHHHHH
Q 044266 380 LNESYICDIWKVGLRFNKNKNGIITREEIMKKVDQVLEDE-----NFKARALDLKETSLNSVREGGQSDKTFKNFVQWIK 454 (462)
Q Consensus 380 ~na~~v~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ll~~~-----~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 454 (462)
.||+++++.+|+|+++..++.+.+++++|+++|+++|.|+ ++|++|+++++.+.+ +||+| ..+++|++++.
T Consensus 364 ~na~~~~~~~g~g~~~~~~~~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~~---~gg~s-s~l~~~v~~~~ 439 (446)
T PLN00414 364 LITRLLTEELEVSVKVQREDSGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLVS---PGLLS-GYADKFVEALE 439 (446)
T ss_pred HHHHHHHHHhCeEEEeccccCCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHc---CCCcH-HHHHHHHHHHH
Confidence 9999997547999999642113589999999999999764 499999999999865 46634 44899999997
Q ss_pred hhh
Q 044266 455 AEA 457 (462)
Q Consensus 455 ~~~ 457 (462)
..+
T Consensus 440 ~~~ 442 (446)
T PLN00414 440 NEV 442 (446)
T ss_pred Hhc
Confidence 654
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=8.6e-54 Score=420.41 Aligned_cols=399 Identities=16% Similarity=0.198 Sum_probs=272.2
Q ss_pred CCEEEEE-cCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcCCCCCC-------CC-
Q 044266 4 RPHVLAF-PYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIPDGMEP-------EG- 74 (462)
Q Consensus 4 ~~~Il~~-~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~-------~~- 74 (462)
.+||+.+ |.++.||+.-+-.++++|++|||+||++++..... .... ...+++.+.++...+. ..
T Consensus 20 ~~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~~-~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~ 92 (507)
T PHA03392 20 AARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRVY-YASH------LCGNITEIDASLSVEYFKKLVKSSAV 92 (507)
T ss_pred cccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEecccccc-cccC------CCCCEEEEEcCCChHHHHHHHhhhhH
Confidence 5689855 88999999999999999999999999998754211 1000 0126666665411000 00
Q ss_pred --C---CCCH----HHHHHHHHHhccHHHH--HHHHHHhhccCCCceEEEeCCCcchHHHHHHHc-CCceEEEccchhHH
Q 044266 75 --D---RNDL----GMLTKTMVRVMPEKLE--ELIENINRLENEKITCVVADGSMGWVMEVAEKM-KLRRAAFWPAAAGL 142 (462)
Q Consensus 75 --~---~~~~----~~~~~~~~~~~~~~~~--~l~~~l~~~~~~~~Dlvi~D~~~~~~~~~A~~l-giP~v~~~~~~~~~ 142 (462)
. ..+. ......+...|+..+. ++.+.++.. +.++|+||+|.+..|+..+|+.+ ++|.|.++++....
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~-~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~~~ 171 (507)
T PHA03392 93 FRKRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIANK-NNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGLA 171 (507)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcC-CCceeEEEecccchhHHHHHHHhCCCCEEEEcCCCCch
Confidence 0 0000 1111222333322222 122333300 17899999999888999999999 99998888866543
Q ss_pred HHHHHhHhhhhcCCCcCCCCCC--ccccccccCCCCcccCcccchhhhhcCCCcchhhHHHHHH----hhhhhccccEEE
Q 044266 143 LALSFSVQRFLDDGIVDDNGTP--VKQQMIQLAPTMAAIHSSKLVWACIGDFNTQKIVFDFTID----NNETIKKAERLI 216 (462)
Q Consensus 143 ~~~~~~~p~~~~~~~~~~~~~~--~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l 216 (462)
......-....+..+.|.+... ++++..+.+.++-........+..+ .+..++...+++.. ..+..+++++++
T Consensus 172 ~~~~~~gg~p~~~syvP~~~~~~~~~Msf~~R~~N~~~~~~~~~~~~~~-~~~~~~l~~~~f~~~~~~~~~l~~~~~l~l 250 (507)
T PHA03392 172 ENFETMGAVSRHPVYYPNLWRSKFGNLNVWETINEIYTELRLYNEFSLL-ADEQNKLLKQQFGPDTPTIRELRNRVQLLF 250 (507)
T ss_pred hHHHhhccCCCCCeeeCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHcCCCCCCHHHHHhCCcEEE
Confidence 2211110011111122211110 1111111111110000000000000 11122222333221 234457889999
Q ss_pred EcCccccchhhhccCCCccccCcccCCCCCCCCCCCCCCCCchhhHhhccCCCCcEEEEeccCccc---cCHHHHHHHHH
Q 044266 217 CNSTYDLEPGALDLIPEFLPIGPLLSSNRLGNSAGYFWPEDSTCLKWLDQQQQNSVIYVAFGSFTV---FDKEQFQELAS 293 (462)
Q Consensus 217 ~ns~~~le~~~~~~~p~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~---~~~~~~~~~~~ 293 (462)
+|+.+.++++ ++++|++++|||++.+.... .+.++++.+|++.++ +++|||||||+.. .+.+.++.+++
T Consensus 251 vns~~~~d~~-rp~~p~v~~vGgi~~~~~~~------~~l~~~l~~fl~~~~-~g~V~vS~GS~~~~~~~~~~~~~~~l~ 322 (507)
T PHA03392 251 VNVHPVFDNN-RPVPPSVQYLGGLHLHKKPP------QPLDDYLEEFLNNST-NGVVYVSFGSSIDTNDMDNEFLQMLLR 322 (507)
T ss_pred EecCccccCC-CCCCCCeeeecccccCCCCC------CCCCHHHHHHHhcCC-CcEEEEECCCCCcCCCCCHHHHHHHHH
Confidence 9999999998 89999999999998754221 257889999999864 5799999999853 57788999999
Q ss_pred HHHhCCCCEEEEEcCCCCCcccccCchhHHHHhcCCceeecccCcccccCCCCcccceeccCchhhhhhhhcCCceeccc
Q 044266 294 GLELTNRPFLWVVRPDITNDAIDAYPEGFQDRVATRRQMVGWAPQQKVLTHPSIACFLSHCGWNSTMEGVSNGVPFLCWP 373 (462)
Q Consensus 294 a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~ll~~~~~~~~I~HgG~~sv~eal~~GvP~l~~P 373 (462)
++++.+.++||++++.. .+ ...++|+++.+|+||.+||+|+.+++||||||+||++||+++|||||++|
T Consensus 323 a~~~l~~~viw~~~~~~-------~~----~~~p~Nv~i~~w~Pq~~lL~hp~v~~fItHGG~~s~~Eal~~GvP~v~iP 391 (507)
T PHA03392 323 TFKKLPYNVLWKYDGEV-------EA----INLPANVLTQKWFPQRAVLKHKNVKAFVTQGGVQSTDEAIDALVPMVGLP 391 (507)
T ss_pred HHHhCCCeEEEEECCCc-------Cc----ccCCCceEEecCCCHHHHhcCCCCCEEEecCCcccHHHHHHcCCCEEECC
Confidence 99999999999998541 11 12478999999999999999999999999999999999999999999999
Q ss_pred cccchhhhHHhHhhhheeeEEeecCCCCccCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Q 044266 374 YFADQFLNESYICDIWKVGLRFNKNKNGIITREEIMKKVDQVLEDENFKARALDLKETSLN 434 (462)
Q Consensus 374 ~~~DQ~~na~~v~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~~~~ 434 (462)
+++||+.||+|+++ +|+|+.++. ..+++++|.++|+++++|++||+||+++++.+++
T Consensus 392 ~~~DQ~~Na~rv~~-~G~G~~l~~---~~~t~~~l~~ai~~vl~~~~y~~~a~~ls~~~~~ 448 (507)
T PHA03392 392 MMGDQFYNTNKYVE-LGIGRALDT---VTVSAAQLVLAIVDVIENPKYRKNLKELRHLIRH 448 (507)
T ss_pred CCccHHHHHHHHHH-cCcEEEecc---CCcCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 99999999999999 599999985 6789999999999999999999999999999997
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=1.1e-53 Score=427.85 Aligned_cols=394 Identities=23% Similarity=0.331 Sum_probs=233.2
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcCCCCCCCCCC---CCH--
Q 044266 5 PHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIPDGMEPEGDR---NDL-- 79 (462)
Q Consensus 5 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~---~~~-- 79 (462)
.|||++| .++||+.++..|+++|++|||+||++++.... .+... ...++++..++.+.+..... .+.
T Consensus 1 ~kvLv~p-~~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (500)
T PF00201_consen 1 GKVLVFP-MAYSHFIFMRPLAEELAERGHNVTVLTPSPSS-SLNPS------KPSNIRFETYPDPYPEEEFEEIFPEFIS 72 (500)
T ss_dssp ------------SHHHHHHHHHHHHHH-TTSEEEHHHHHH-T------------S-CCEEEE-----TT------TTHHH
T ss_pred CEEEEeC-CCcCHHHHHHHHHHHHHhcCCceEEEEeeccc-ccccc------cccceeeEEEcCCcchHHHhhhhHHHHH
Confidence 3788888 48899999999999999999999999885422 22211 11367777777555443211 111
Q ss_pred ------------HHHHHHH---HHhccHHH------HHHHHHHhhccCCCceEEEeCCCcchHHHHHHHcCCceEEEccc
Q 044266 80 ------------GMLTKTM---VRVMPEKL------EELIENINRLENEKITCVVADGSMGWVMEVAEKMKLRRAAFWPA 138 (462)
Q Consensus 80 ------------~~~~~~~---~~~~~~~~------~~l~~~l~~~~~~~~Dlvi~D~~~~~~~~~A~~lgiP~v~~~~~ 138 (462)
...+..+ .+.....+ .++++.++. .++|++|+|.+..|+..+|+.+|+|.+.+.+.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~---~~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~ 149 (500)
T PF00201_consen 73 KFFSESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKS---EKFDLVISDAFDPCGLALAHYLGIPVIIISSS 149 (500)
T ss_dssp HHHHHHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHH---HHHCT-EEEEEESSHHHHHHHHHHTHHHHHHC
T ss_pred HHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh---hccccceEeeccchhHHHHHHhcCCeEEEecc
Confidence 0011100 11111111 122233444 68999999999899999999999999876544
Q ss_pred hhHHHHHHHhHhhhhcCCCcCCCC--CCccccccccCCCCcccCcccchhhhhcCCCcchhhHHH---HHHhhhhhcccc
Q 044266 139 AAGLLALSFSVQRFLDDGIVDDNG--TPVKQQMIQLAPTMAAIHSSKLVWACIGDFNTQKIVFDF---TIDNNETIKKAE 213 (462)
Q Consensus 139 ~~~~~~~~~~~p~~~~~~~~~~~~--~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 213 (462)
.+...............++.+... .++.++..+.+.++.......+........ .++...+. -....+.+.+++
T Consensus 150 ~~~~~~~~~~~g~p~~psyvP~~~s~~~~~msf~~Ri~N~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 228 (500)
T PF00201_consen 150 TPMYDLSSFSGGVPSPPSYVPSMFSDFSDRMSFWQRIKNFLFYLYFRFIFRYFFSP-QDKLYKKYFGFPFSFRELLSNAS 228 (500)
T ss_dssp CSCSCCTCCTSCCCTSTTSTTCBCCCSGTTSSSST--TTSHHHHHHHHHHHHGGGS--TTS-EEESS-GGGCHHHHHHHH
T ss_pred cccchhhhhccCCCCChHHhccccccCCCccchhhhhhhhhhhhhhccccccchhh-HHHHHhhhcccccccHHHHHHHH
Confidence 332110000000000111111100 011111111111111000000000001001 01000000 012234456778
Q ss_pred EEEEcCccccchhhhccCCCccccCcccCCCCCCCCCCCCCCCCchhhHhhccCCCCcEEEEeccCccc-cCHHHHHHHH
Q 044266 214 RLICNSTYDLEPGALDLIPEFLPIGPLLSSNRLGNSAGYFWPEDSTCLKWLDQQQQNSVIYVAFGSFTV-FDKEQFQELA 292 (462)
Q Consensus 214 ~~l~ns~~~le~~~~~~~p~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~-~~~~~~~~~~ 292 (462)
++++|+.+.+++| ++.+|++++||+++..... +.++++..|++...++++|||||||... ++.+..+.++
T Consensus 229 l~l~ns~~~ld~p-rp~~p~v~~vGgl~~~~~~--------~l~~~~~~~~~~~~~~~vv~vsfGs~~~~~~~~~~~~~~ 299 (500)
T PF00201_consen 229 LVLINSHPSLDFP-RPLLPNVVEVGGLHIKPAK--------PLPEELWNFLDSSGKKGVVYVSFGSIVSSMPEEKLKEIA 299 (500)
T ss_dssp HCCSSTEEE-----HHHHCTSTTGCGC-S------------TCHHHHHHHTSTTTTTEEEEEE-TSSSTT-HHHHHHHHH
T ss_pred HHhhhccccCcCC-cchhhcccccCcccccccc--------ccccccchhhhccCCCCEEEEecCcccchhHHHHHHHHH
Confidence 8999999999998 8999999999999876543 4678899999985568899999999865 3444588899
Q ss_pred HHHHhCCCCEEEEEcCCCCCcccccCchhHHHHhcCCceeecccCcccccCCCCcccceeccCchhhhhhhhcCCceecc
Q 044266 293 SGLELTNRPFLWVVRPDITNDAIDAYPEGFQDRVATRRQMVGWAPQQKVLTHPSIACFLSHCGWNSTMEGVSNGVPFLCW 372 (462)
Q Consensus 293 ~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~ll~~~~~~~~I~HgG~~sv~eal~~GvP~l~~ 372 (462)
++|++.+.+|||++++. .+. .+++|+++.+|+||.+||+|+++++||||||+||++||+++|||||++
T Consensus 300 ~~~~~~~~~~iW~~~~~--------~~~----~l~~n~~~~~W~PQ~~lL~hp~v~~fitHgG~~s~~Ea~~~gvP~l~~ 367 (500)
T PF00201_consen 300 EAFENLPQRFIWKYEGE--------PPE----NLPKNVLIVKWLPQNDLLAHPRVKLFITHGGLNSTQEALYHGVPMLGI 367 (500)
T ss_dssp HHHHCSTTEEEEEETCS--------HGC----HHHTTEEEESS--HHHHHTSTTEEEEEES--HHHHHHHHHCT--EEE-
T ss_pred HHHhhCCCccccccccc--------ccc----cccceEEEeccccchhhhhcccceeeeeccccchhhhhhhccCCccCC
Confidence 99999999999999864 111 246889999999999999999999999999999999999999999999
Q ss_pred ccccchhhhHHhHhhhheeeEEeecCCCCccCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhH
Q 044266 373 PYFADQFLNESYICDIWKVGLRFNKNKNGIITREEIMKKVDQVLEDENFKARALDLKETSLNS 435 (462)
Q Consensus 373 P~~~DQ~~na~~v~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~~~~~ 435 (462)
|+++||+.||+++++. |+|+.++. ..+|.++|.++|+++|+|++|++||+++++.+++.
T Consensus 368 P~~~DQ~~na~~~~~~-G~g~~l~~---~~~~~~~l~~ai~~vl~~~~y~~~a~~ls~~~~~~ 426 (500)
T PF00201_consen 368 PLFGDQPRNAARVEEK-GVGVVLDK---NDLTEEELRAAIREVLENPSYKENAKRLSSLFRDR 426 (500)
T ss_dssp GCSTTHHHHHHHHHHT-TSEEEEGG---GC-SHHHHHHHHHHHHHSHHHHHHHHHHHHTTT--
T ss_pred CCcccCCccceEEEEE-eeEEEEEe---cCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC
Confidence 9999999999999994 99999986 67999999999999999999999999999999974
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=1.7e-45 Score=357.38 Aligned_cols=366 Identities=18% Similarity=0.263 Sum_probs=258.1
Q ss_pred cCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcCCCCCCCCCC-----CCHHHHHHH
Q 044266 11 PYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIPDGMEPEGDR-----NDLGMLTKT 85 (462)
Q Consensus 11 ~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~-----~~~~~~~~~ 85 (462)
.+|++||++|+++||++|+++||+|+|++++.+.+.+++. |+.|..++......... .++...+..
T Consensus 2 ~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~---------G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (392)
T TIGR01426 2 NIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEAA---------GAEFVLYGSALPPPDNPPENTEEEPIDIIEK 72 (392)
T ss_pred CCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHHc---------CCEEEecCCcCccccccccccCcchHHHHHH
Confidence 5799999999999999999999999999999999999987 89999988654432111 234445555
Q ss_pred HHHhccHHHHHHHHHHhhccCCCceEEEeCCCcchHHHHHHHcCCceEEEccchhHHHHHHHhHhhhhcCCCcCCCCCCc
Q 044266 86 MVRVMPEKLEELIENINRLENEKITCVVADGSMGWVMEVAEKMKLRRAAFWPAAAGLLALSFSVQRFLDDGIVDDNGTPV 165 (462)
Q Consensus 86 ~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 165 (462)
+...+...+.++.+.++. .+||+||+|.+++++..+|+++|||+|.+++.+..... .|... . +.
T Consensus 73 ~~~~~~~~~~~l~~~~~~---~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~----~~~~~----~-----~~ 136 (392)
T TIGR01426 73 LLDEAEDVLPQLEEAYKG---DRPDLIVYDIASWTGRLLARKWDVPVISSFPTFAANEE----FEEMV----S-----PA 136 (392)
T ss_pred HHHHHHHHHHHHHHHhcC---CCCCEEEECCccHHHHHHHHHhCCCEEEEehhhccccc----ccccc----c-----cc
Confidence 555555555555555555 89999999998889999999999999998654321100 00000 0 00
Q ss_pred cccccccCCCCcccCcccc---hhhhhcCCCcchhhHHHHHHhhh-hhccccEEEEcCccccchhhhccCCCccccCccc
Q 044266 166 KQQMIQLAPTMAAIHSSKL---VWACIGDFNTQKIVFDFTIDNNE-TIKKAERLICNSTYDLEPGALDLIPEFLPIGPLL 241 (462)
Q Consensus 166 ~~~~~~~~p~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~ns~~~le~~~~~~~p~v~~vGp~~ 241 (462)
........+.... ....+ ...+......... .... .....+..+..+.+.|+++..+++++++++||+.
T Consensus 137 ~~~~~~~~~~~~~-~~~~~~~~~~~~r~~~gl~~~------~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~Gp~~ 209 (392)
T TIGR01426 137 GEGSAEEGAIAER-GLAEYVARLSALLEEHGITTP------PVEFLAAPRRDLNLVYTPKAFQPAGETFDDSFTFVGPCI 209 (392)
T ss_pred chhhhhhhccccc-hhHHHHHHHHHHHHHhCCCCC------CHHHHhcCCcCcEEEeCChHhCCCccccCCCeEEECCCC
Confidence 0000000000000 00000 0000000000000 0000 0123344677777888876456788999999987
Q ss_pred CCCCCCCCCCCCCCCCchhhHhhccCCCCcEEEEeccCccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCcccccCchh
Q 044266 242 SSNRLGNSAGYFWPEDSTCLKWLDQQQQNSVIYVAFGSFTVFDKEQFQELASGLELTNRPFLWVVRPDITNDAIDAYPEG 321 (462)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~ 321 (462)
...... ..|.....++++||||+||+.....+.++.+++++.+.+.++++..+...+. ..
T Consensus 210 ~~~~~~-------------~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~~~-------~~ 269 (392)
T TIGR01426 210 GDRKED-------------GSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGVDP-------AD 269 (392)
T ss_pred CCcccc-------------CCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCCCh-------hH
Confidence 543211 1255555668899999999866666788899999999999999888654211 11
Q ss_pred HHHHhcCCceeecccCcccccCCCCcccceeccCchhhhhhhhcCCceeccccccchhhhHHhHhhhheeeEEeecCCCC
Q 044266 322 FQDRVATRRQMVGWAPQQKVLTHPSIACFLSHCGWNSTMEGVSNGVPFLCWPYFADQFLNESYICDIWKVGLRFNKNKNG 401 (462)
Q Consensus 322 ~~~~~~~~v~~~~~~pq~~ll~~~~~~~~I~HgG~~sv~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~g~~~~~~~~~ 401 (462)
+ +..++|+.+.+|+||.++|+++++ ||||||+||++||+++|+|+|++|...||..||+++++ +|+|+.+.. .
T Consensus 270 ~-~~~~~~v~~~~~~p~~~ll~~~~~--~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~-~g~g~~l~~---~ 342 (392)
T TIGR01426 270 L-GELPPNVEVRQWVPQLEILKKADA--FITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRIAE-LGLGRHLPP---E 342 (392)
T ss_pred h-ccCCCCeEEeCCCCHHHHHhhCCE--EEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHHHH-CCCEEEecc---c
Confidence 1 124688999999999999999887 99999999999999999999999999999999999999 699999874 5
Q ss_pred ccCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhH
Q 044266 402 IITREEIMKKVDQVLEDENFKARALDLKETSLNS 435 (462)
Q Consensus 402 ~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~~~~~ 435 (462)
.+++++|.++|+++|+|++|+++++++++++++.
T Consensus 343 ~~~~~~l~~ai~~~l~~~~~~~~~~~l~~~~~~~ 376 (392)
T TIGR01426 343 EVTAEKLREAVLAVLSDPRYAERLRKMRAEIREA 376 (392)
T ss_pred cCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHc
Confidence 6899999999999999999999999999999974
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=6.2e-45 Score=355.24 Aligned_cols=364 Identities=16% Similarity=0.130 Sum_probs=252.4
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcCCCCCCCCC---------
Q 044266 5 PHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIPDGMEPEGD--------- 75 (462)
Q Consensus 5 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~--------- 75 (462)
+||+|++.|+.||++|+++||++|++|||+|+|++++.+...++.. |++|..+++.......
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~~---------G~~~~~~~~~~~~~~~~~~~~~~~~ 71 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEAA---------GLEFVPVGGDPDELLASPERNAGLL 71 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHHc---------CCceeeCCCCHHHHHhhhhhccccc
Confidence 4999999999999999999999999999999999999999888877 8999998864322110
Q ss_pred ---CCCHHHHHHHHHHhccHHHHHHHHHHhhccCCCceEEEeCCCcchHHHHHHHcCCceEEEccchhHHHHHHHhHhhh
Q 044266 76 ---RNDLGMLTKTMVRVMPEKLEELIENINRLENEKITCVVADGSMGWVMEVAEKMKLRRAAFWPAAAGLLALSFSVQRF 152 (462)
Q Consensus 76 ---~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~ 152 (462)
..........+...+...++++++.++. ++||+||+|.+.+++..+|+++|||++.+++++.......
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~------ 142 (401)
T cd03784 72 LLGPGLLLGALRLLRREAEAMLDDLVAAARD---WGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSAF------ 142 (401)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhcc---cCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccccC------
Confidence 0112233344455555566666666555 8999999999888999999999999999987664311100
Q ss_pred hcCCCcCCCCCCccccccccCCCCcccCcccchhhhhcCCCcchhhHHHHHHhhhhh---------ccccEEEEcCcccc
Q 044266 153 LDDGIVDDNGTPVKQQMIQLAPTMAAIHSSKLVWACIGDFNTQKIVFDFTIDNNETI---------KKAERLICNSTYDL 223 (462)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~ns~~~l 223 (462)
.+ .. +.. ....+......................+ ...+..+....+.+
T Consensus 143 -----~~------------~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~ 200 (401)
T cd03784 143 -----PP------------PL-GRA----NLRLYALLEAELWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGFSPAV 200 (401)
T ss_pred -----CC------------cc-chH----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCcEEEecCccc
Confidence 00 00 000 0000000000000000001111111101 01223333333444
Q ss_pred chhhhccCCCccccCc-ccCCCCCCCCCCCCCCCCchhhHhhccCCCCcEEEEeccCccccC-HHHHHHHHHHHHhCCCC
Q 044266 224 EPGALDLIPEFLPIGP-LLSSNRLGNSAGYFWPEDSTCLKWLDQQQQNSVIYVAFGSFTVFD-KEQFQELASGLELTNRP 301 (462)
Q Consensus 224 e~~~~~~~p~v~~vGp-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~-~~~~~~~~~a~~~~~~~ 301 (462)
.++..++.++..++|. +..... . ...+.++..|++. ++++|||++||+.... ......+++++...+.+
T Consensus 201 ~~~~~~~~~~~~~~g~~~~~~~~-~------~~~~~~~~~~~~~--~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~ 271 (401)
T cd03784 201 LPPPPDWPRFDLVTGYGFRDVPY-N------GPPPPELWLFLAA--GRPPVYVGFGSMVVRDPEALARLDVEAVATLGQR 271 (401)
T ss_pred CCCCCCccccCcEeCCCCCCCCC-C------CCCCHHHHHHHhC--CCCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCe
Confidence 4343566777777763 332222 1 2456677788876 3679999999987644 45678899999888999
Q ss_pred EEEEEcCCCCCcccccCchhHHHHhcCCceeecccCcccccCCCCcccceeccCchhhhhhhhcCCceeccccccchhhh
Q 044266 302 FLWVVRPDITNDAIDAYPEGFQDRVATRRQMVGWAPQQKVLTHPSIACFLSHCGWNSTMEGVSNGVPFLCWPYFADQFLN 381 (462)
Q Consensus 302 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~ll~~~~~~~~I~HgG~~sv~eal~~GvP~l~~P~~~DQ~~n 381 (462)
+||+++..... . ...++|+++.+|+||.++|+++++ ||||||+||++|++++|||+|++|+..||+.|
T Consensus 272 ~i~~~g~~~~~----~------~~~~~~v~~~~~~p~~~ll~~~d~--~I~hgG~~t~~eal~~GvP~v~~P~~~dQ~~~ 339 (401)
T cd03784 272 AILSLGWGGLG----A------EDLPDNVRVVDFVPHDWLLPRCAA--VVHHGGAGTTAAALRAGVPQLVVPFFGDQPFW 339 (401)
T ss_pred EEEEccCcccc----c------cCCCCceEEeCCCCHHHHhhhhhe--eeecCCchhHHHHHHcCCCEEeeCCCCCcHHH
Confidence 99998765211 0 124689999999999999999777 99999999999999999999999999999999
Q ss_pred HHhHhhhheeeEEeecCCCCccCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Q 044266 382 ESYICDIWKVGLRFNKNKNGIITREEIMKKVDQVLEDENFKARALDLKETSLN 434 (462)
Q Consensus 382 a~~v~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~~~~ 434 (462)
|+++++ +|+|+.+.. ..+++++|.++|++++++ .++++++++++++++
T Consensus 340 a~~~~~-~G~g~~l~~---~~~~~~~l~~al~~~l~~-~~~~~~~~~~~~~~~ 387 (401)
T cd03784 340 AARVAE-LGAGPALDP---RELTAERLAAALRRLLDP-PSRRRAAALLRRIRE 387 (401)
T ss_pred HHHHHH-CCCCCCCCc---ccCCHHHHHHHHHHHhCH-HHHHHHHHHHHHHHh
Confidence 999999 699999975 458999999999999975 566677777777764
No 26
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=2.5e-44 Score=360.67 Aligned_cols=406 Identities=27% Similarity=0.461 Sum_probs=267.8
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhcCCC----CCCCCeEEEEcCCCCCCCCCCC--
Q 044266 4 RPHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNALGQNN----YIGDQIKLVSIPDGMEPEGDRN-- 77 (462)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~----~~~~~i~~~~i~~~~~~~~~~~-- 77 (462)
+.+++++++|++||++|+..+|+.|+++||+||++++.......... .... -....+.+...+++++......
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKS-SKSKSIKKINPPPFEFLTIPDGLPEGWEDDDL 83 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCc-ccceeeeeeecChHHhhhhhhhhccchHHHHH
Confidence 46788889999999999999999999999999999998765543321 1000 0001122222222333332111
Q ss_pred CHHHHHHHHHHhccHHHHHHHHHHhhccCCCceEEEeCCCcchHHHHHHHcC-CceEEEccchhHHHHHHHhHhhhhcCC
Q 044266 78 DLGMLTKTMVRVMPEKLEELIENINRLENEKITCVVADGSMGWVMEVAEKMK-LRRAAFWPAAAGLLALSFSVQRFLDDG 156 (462)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~~~~~~A~~lg-iP~v~~~~~~~~~~~~~~~~p~~~~~~ 156 (462)
........+...|...+++....+....+.++|++|+|.+..+...++...+ ++...+.+..........+.+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~~---- 159 (496)
T KOG1192|consen 84 DISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPSPLS---- 159 (496)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcCccc----
Confidence 1112244555556666666554444322144999999988777777777775 99998888887765554432221
Q ss_pred CcCCCCCC---ccccccccCCCCcccCcccchhhhhcCC----CcchhhHHHHH-------HhhhhhccccEEEEcCccc
Q 044266 157 IVDDNGTP---VKQQMIQLAPTMAAIHSSKLVWACIGDF----NTQKIVFDFTI-------DNNETIKKAERLICNSTYD 222 (462)
Q Consensus 157 ~~~~~~~~---~~~~~~~~~p~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-------~~~~~~~~~~~~l~ns~~~ 222 (462)
+.+..... +........+. +....++ ...... ........... ...+...+++..++|+.+.
T Consensus 160 ~~p~~~~~~~~~~~~~~~~~~n---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ln~~~~ 235 (496)
T KOG1192|consen 160 YVPSPFSLSSGDDMSFPERVPN---LIKKDLP-SFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNASFIFLNSNPL 235 (496)
T ss_pred ccCcccCccccccCcHHHHHHH---HHHHHHH-HHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcCeEEEEccCcc
Confidence 11110000 00000000110 1111111 000000 00011111111 1123456778999999999
Q ss_pred cchhhhccCCCccccCcccCCCCCCCCCCCCCCCCchhhHhhccCCCC--cEEEEeccCcc---ccCHHHHHHHHHHHHh
Q 044266 223 LEPGALDLIPEFLPIGPLLSSNRLGNSAGYFWPEDSTCLKWLDQQQQN--SVIYVAFGSFT---VFDKEQFQELASGLEL 297 (462)
Q Consensus 223 le~~~~~~~p~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~v~vs~Gs~~---~~~~~~~~~~~~a~~~ 297 (462)
++++.++..+++++|||+....... +. .....|++..+.. ++|||||||+. .++.+..+.++.+++.
T Consensus 236 ~~~~~~~~~~~v~~IG~l~~~~~~~------~~--~~~~~wl~~~~~~~~~vvyvSfGS~~~~~~lp~~~~~~l~~~l~~ 307 (496)
T KOG1192|consen 236 LDFEPRPLLPKVIPIGPLHVKDSKQ------KS--PLPLEWLDILDESRHSVVYISFGSMVNSADLPEEQKKELAKALES 307 (496)
T ss_pred cCCCCCCCCCCceEECcEEecCccc------cc--cccHHHHHHHhhccCCeEEEECCcccccccCCHHHHHHHHHHHHh
Confidence 8885477789999999999874322 11 1344666655443 79999999997 7899999999999999
Q ss_pred C-CCCEEEEEcCCCCCcccccCchhHHHHhcCCceeecccCcccc-cCCCCcccceeccCchhhhhhhhcCCceeccccc
Q 044266 298 T-NRPFLWVVRPDITNDAIDAYPEGFQDRVATRRQMVGWAPQQKV-LTHPSIACFLSHCGWNSTMEGVSNGVPFLCWPYF 375 (462)
Q Consensus 298 ~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~l-l~~~~~~~~I~HgG~~sv~eal~~GvP~l~~P~~ 375 (462)
. +..|+|+++... ...+++++.++.++||...+|+||.++ |.|+++++||||||+||++|++++|||||++|++
T Consensus 308 ~~~~~FiW~~~~~~----~~~~~~~~~~~~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nSt~E~~~~GvP~v~~Plf 383 (496)
T KOG1192|consen 308 LQGVTFLWKYRPDD----SIYFPEGLPNRGRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNSTLESIYSGVPMVCVPLF 383 (496)
T ss_pred CCCceEEEEecCCc----chhhhhcCCCCCcCceEEecCCCcHHHhcCCCcCcEEEECCcccHHHHHHhcCCceecCCcc
Confidence 9 888999998751 111333332222467888899999998 6999999999999999999999999999999999
Q ss_pred cchhhhHHhHhhhheeeEEeecCCCCccCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Q 044266 376 ADQFLNESYICDIWKVGLRFNKNKNGIITREEIMKKVDQVLEDENFKARALDLKETSLN 434 (462)
Q Consensus 376 ~DQ~~na~~v~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~~~~ 434 (462)
+||+.||++++++ |.|..+.. .+++.+++.+++.+++++++|+++|+++++.+++
T Consensus 384 ~DQ~~Na~~i~~~-g~~~v~~~---~~~~~~~~~~~~~~il~~~~y~~~~~~l~~~~~~ 438 (496)
T KOG1192|consen 384 GDQPLNARLLVRH-GGGGVLDK---RDLVSEELLEAIKEILENEEYKEAAKRLSEILRD 438 (496)
T ss_pred ccchhHHHHHHhC-CCEEEEeh---hhcCcHHHHHHHHHHHcChHHHHHHHHHHHHHHc
Confidence 9999999999996 66666654 5566666999999999999999999999999885
No 27
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=8.7e-43 Score=333.66 Aligned_cols=393 Identities=19% Similarity=0.187 Sum_probs=251.7
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcCCCCCCCCC---CCCHH
Q 044266 4 RPHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIPDGMEPEGD---RNDLG 80 (462)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~---~~~~~ 80 (462)
++||+|+..|++||++|+++||++|.++||+|+|++++.+++.+++. |+.|..++........ ..+..
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~a---------g~~f~~~~~~~~~~~~~~~~~~~~ 71 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEAA---------GLAFVAYPIRDSELATEDGKFAGV 71 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHHh---------CcceeeccccCChhhhhhhhhhcc
Confidence 46999999999999999999999999999999999999999999998 7777777654111111 11111
Q ss_pred HHHHHHHHhccHHHHHHHHHHhhccCCCceEEEeCCCcchHHHHHHHcCCceEEEccchhHHHHHHH-hHhhhhcCCCcC
Q 044266 81 MLTKTMVRVMPEKLEELIENINRLENEKITCVVADGSMGWVMEVAEKMKLRRAAFWPAAAGLLALSF-SVQRFLDDGIVD 159 (462)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~-~~p~~~~~~~~~ 159 (462)
+.+............++++.+.+ ..+|+++.|.....+ .+++..++|++.............. +.+.....+...
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~e---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (406)
T COG1819 72 KSFRRLLQQFKKLIRELLELLRE---LEPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPAAGLPLPPVGIAGKLP 147 (406)
T ss_pred chhHHHhhhhhhhhHHHHHHHHh---cchhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCcccccCccccccccccc
Confidence 11110222233334455555555 899999999666655 8899999999886554432111110 000000000000
Q ss_pred CCCCCccccccccCCCCcccCc-ccchhhhhcC-CCcchhhHHHH-HHhhhhhccccEEEEcCccccchhhhccCCCccc
Q 044266 160 DNGTPVKQQMIQLAPTMAAIHS-SKLVWACIGD-FNTQKIVFDFT-IDNNETIKKAERLICNSTYDLEPGALDLIPEFLP 236 (462)
Q Consensus 160 ~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~l~ns~~~le~~~~~~~p~v~~ 236 (462)
....+-.+.... ......+... ........... .+....+...........+....+..+.+....+
T Consensus 148 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 217 (406)
T COG1819 148 ----------IPLYPLPPRLVRPLIFARSWLPKLVVRRNLGLELGLPNIRRLFASGPLLEIAYTDVLFPPGDRLPFIGPY 217 (406)
T ss_pred ----------ccccccChhhccccccchhhhhhhhhhhhccccccccchHHHhcCCCCccccccccccCCCCCCCCCcCc
Confidence 000000000000 0000000000 00000000000 0001111111111111111111110223345566
Q ss_pred cCcccCCCCCCCCCCCCCCCCchhhHhhccCCCCcEEEEeccCccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCcccc
Q 044266 237 IGPLLSSNRLGNSAGYFWPEDSTCLKWLDQQQQNSVIYVAFGSFTVFDKEQFQELASGLELTNRPFLWVVRPDITNDAID 316 (462)
Q Consensus 237 vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~ 316 (462)
+||+....... ...| ...++++||+|+||.... .++++.+++++...+.++|+..+.. +.
T Consensus 218 ~~~~~~~~~~~------------~~~~--~~~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~~~~~-~~---- 277 (406)
T COG1819 218 IGPLLGEAANE------------LPYW--IPADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVSLGGA-RD---- 277 (406)
T ss_pred ccccccccccc------------Ccch--hcCCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEecccc-cc----
Confidence 67766554332 2233 234578999999999766 8899999999999999999988652 11
Q ss_pred cCchhHHHHhcCCceeecccCcccccCCCCcccceeccCchhhhhhhhcCCceeccccccchhhhHHhHhhhheeeEEee
Q 044266 317 AYPEGFQDRVATRRQMVGWAPQQKVLTHPSIACFLSHCGWNSTMEGVSNGVPFLCWPYFADQFLNESYICDIWKVGLRFN 396 (462)
Q Consensus 317 ~~~~~~~~~~~~~v~~~~~~pq~~ll~~~~~~~~I~HgG~~sv~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~g~~~~ 396 (462)
-....++|+++.+|+||..+++++++ ||||||+||++|||++|||+|++|...||+.||.++++ +|+|..+.
T Consensus 278 -----~~~~~p~n~~v~~~~p~~~~l~~ad~--vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~-~G~G~~l~ 349 (406)
T COG1819 278 -----TLVNVPDNVIVADYVPQLELLPRADA--VIHHGGAGTTSEALYAGVPLVVIPDGADQPLNAERVEE-LGAGIALP 349 (406)
T ss_pred -----ccccCCCceEEecCCCHHHHhhhcCE--EEecCCcchHHHHHHcCCCEEEecCCcchhHHHHHHHH-cCCceecC
Confidence 11134688999999999999999888 99999999999999999999999999999999999999 69999998
Q ss_pred cCCCCccCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhHhhcCCCcHHHHHHHHHHHHh
Q 044266 397 KNKNGIITREEIMKKVDQVLEDENFKARALDLKETSLNSVREGGQSDKTFKNFVQWIKA 455 (462)
Q Consensus 397 ~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 455 (462)
. ..++++.|+++|+++|+|+.|+++++++++.+++. +| .+...+.+++..+
T Consensus 350 ~---~~l~~~~l~~av~~vL~~~~~~~~~~~~~~~~~~~---~g--~~~~a~~le~~~~ 400 (406)
T COG1819 350 F---EELTEERLRAAVNEVLADDSYRRAAERLAEEFKEE---DG--PAKAADLLEEFAR 400 (406)
T ss_pred c---ccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhc---cc--HHHHHHHHHHHHh
Confidence 5 57999999999999999999999999999999985 44 5566677766443
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.95 E-value=3.1e-26 Score=216.92 Aligned_cols=319 Identities=16% Similarity=0.175 Sum_probs=204.7
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchH--HHHHhhcCCCCCCCCeEEEEcCCC-CCCCCCCCCHHH
Q 044266 5 PHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHK--RVVNALGQNNYIGDQIKLVSIPDG-MEPEGDRNDLGM 81 (462)
Q Consensus 5 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~--~v~~~~~~~~~~~~~i~~~~i~~~-~~~~~~~~~~~~ 81 (462)
.||++.+.++.||++|.+++|++|.++||+|+|+++..-.+ .+.+. ++.++.++.. +. ......
T Consensus 2 ~~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l~~~~---------g~~~~~~~~~~l~----~~~~~~ 68 (352)
T PRK12446 2 KKIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTIIEKE---------NIPYYSISSGKLR----RYFDLK 68 (352)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccccCccc---------CCcEEEEeccCcC----CCchHH
Confidence 37999999999999999999999999999999999776432 22222 7888777632 11 111222
Q ss_pred HHHHHHHhccHHHHHHHHHHhhccCCCceEEEeCCCcc--hHHHHHHHcCCceEEEccchhHHHHHHHhHhhhhcCCCcC
Q 044266 82 LTKTMVRVMPEKLEELIENINRLENEKITCVVADGSMG--WVMEVAEKMKLRRAAFWPAAAGLLALSFSVQRFLDDGIVD 159 (462)
Q Consensus 82 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~ 159 (462)
.+......... +.+.++.+++ .+||+|+....+. .+..+|..+|+|++..-...
T Consensus 69 ~~~~~~~~~~~-~~~~~~i~~~---~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~-------------------- 124 (352)
T PRK12446 69 NIKDPFLVMKG-VMDAYVRIRK---LKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDM-------------------- 124 (352)
T ss_pred HHHHHHHHHHH-HHHHHHHHHh---cCCCEEEecCchhhHHHHHHHHHcCCCEEEECCCC--------------------
Confidence 33333332222 2233334444 9999999987666 36788999999998743211
Q ss_pred CCCCCccccccccCCCCcccCcccchhhhhcCCCcchhhHHHHHHhhhhhccccEEEEcCccccchhhhccC-CCccccC
Q 044266 160 DNGTPVKQQMIQLAPTMAAIHSSKLVWACIGDFNTQKIVFDFTIDNNETIKKAERLICNSTYDLEPGALDLI-PEFLPIG 238 (462)
Q Consensus 160 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~-p~v~~vG 238 (462)
.+++.. + + ..+.++.+++ ++++.. ..+. .+++++|
T Consensus 125 -------------~~g~~n--------r-~------------------~~~~a~~v~~-~f~~~~---~~~~~~k~~~tG 160 (352)
T PRK12446 125 -------------TPGLAN--------K-I------------------ALRFASKIFV-TFEEAA---KHLPKEKVIYTG 160 (352)
T ss_pred -------------CccHHH--------H-H------------------HHHhhCEEEE-Eccchh---hhCCCCCeEEEC
Confidence 112110 0 0 1122343333 222211 1112 4678888
Q ss_pred cccCCCCCCCCCCCCCCCCchhhHhhccCCCCcEEEEeccCccccCHH-HHHHHHHHHHhCCCCEEEEEcCCCCCccccc
Q 044266 239 PLLSSNRLGNSAGYFWPEDSTCLKWLDQQQQNSVIYVAFGSFTVFDKE-QFQELASGLELTNRPFLWVVRPDITNDAIDA 317 (462)
Q Consensus 239 p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~-~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~ 317 (462)
+-..+.... ...+...+.+.-.+++++|+|..||.+....+ .+..++..+.. +.+++|.++.+ .
T Consensus 161 ~Pvr~~~~~-------~~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~~-~~~vv~~~G~~----~--- 225 (352)
T PRK12446 161 SPVREEVLK-------GNREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELLL-KYQIVHLCGKG----N--- 225 (352)
T ss_pred CcCCccccc-------ccchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhcc-CcEEEEEeCCc----h---
Confidence 766553321 11111112233334578999999999764442 34445555432 47888888765 1
Q ss_pred CchhHHHHhcCCceeeccc-Cc-ccccCCCCcccceeccCchhhhhhhhcCCceeccccc-----cchhhhHHhHhhhhe
Q 044266 318 YPEGFQDRVATRRQMVGWA-PQ-QKVLTHPSIACFLSHCGWNSTMEGVSNGVPFLCWPYF-----ADQFLNESYICDIWK 390 (462)
Q Consensus 318 ~~~~~~~~~~~~v~~~~~~-pq-~~ll~~~~~~~~I~HgG~~sv~eal~~GvP~l~~P~~-----~DQ~~na~~v~~~~g 390 (462)
+ +...+. ..++.+.+|+ ++ .++|+++|+ +|||||.+|++|++++|+|+|++|+. .||..||+.+++ .|
T Consensus 226 ~-~~~~~~-~~~~~~~~f~~~~m~~~~~~adl--vIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~-~g 300 (352)
T PRK12446 226 L-DDSLQN-KEGYRQFEYVHGELPDILAITDF--VISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFER-QG 300 (352)
T ss_pred H-HHHHhh-cCCcEEecchhhhHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHH-CC
Confidence 1 110111 1345566777 43 479999888 99999999999999999999999974 489999999999 59
Q ss_pred eeEEeecCCCCccCHHHHHHHHHHHhcCH-HHHHHHHH
Q 044266 391 VGLRFNKNKNGIITREEIMKKVDQVLEDE-NFKARALD 427 (462)
Q Consensus 391 ~g~~~~~~~~~~~~~~~l~~~i~~ll~~~-~~~~~a~~ 427 (462)
+|..+.. .+++++.|.+++.++++|+ .++++++.
T Consensus 301 ~~~~l~~---~~~~~~~l~~~l~~ll~~~~~~~~~~~~ 335 (352)
T PRK12446 301 YASVLYE---EDVTVNSLIKHVEELSHNNEKYKTALKK 335 (352)
T ss_pred CEEEcch---hcCCHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 9999973 6789999999999999887 45544433
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.95 E-value=9e-26 Score=213.31 Aligned_cols=307 Identities=17% Similarity=0.203 Sum_probs=195.3
Q ss_pred CEEEEEcCC-CccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcCCCCC-CCCCCCCHHHH
Q 044266 5 PHVLAFPYP-AQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIPDGME-PEGDRNDLGML 82 (462)
Q Consensus 5 ~~Il~~~~~-~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~-~~~~~~~~~~~ 82 (462)
|||+|...+ +.||+.+++.||++| |||+|+|++.....+.+.+. +.+..++.-.. ......+....
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 68 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKPR----------FPVREIPGLGPIQENGRLDRWKT 68 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhccc----------cCEEEccCceEeccCCccchHHH
Confidence 489877766 779999999999999 69999999998766555432 34444432111 11112222222
Q ss_pred HHHHH---HhccHHHHHHHHHHhhccCCCceEEEeCCCcchHHHHHHHcCCceEEEccchhHHHHHHHhHhhhhcCCCcC
Q 044266 83 TKTMV---RVMPEKLEELIENINRLENEKITCVVADGSMGWVMEVAEKMKLRRAAFWPAAAGLLALSFSVQRFLDDGIVD 159 (462)
Q Consensus 83 ~~~~~---~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~ 159 (462)
..... ......++++++.++. .+||+||+| +.+.+..+|+..|||++.+........
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~l~~---~~pDlVIsD-~~~~~~~aa~~~giP~i~i~~~~~~~~---------------- 128 (318)
T PF13528_consen 69 VRNNIRWLARLARRIRREIRWLRE---FRPDLVISD-FYPLAALAARRAGIPVIVISNQYWFLH---------------- 128 (318)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHh---cCCCEEEEc-ChHHHHHHHHhcCCCEEEEEehHHccc----------------
Confidence 22221 1223445555566666 899999999 666678889999999999877554310
Q ss_pred CCCCCccccccccCCCCcccCcccchhhhhcCCCcchhhHHHHHHhhhhhccccEEEEcCccccchhhhccCCCccccCc
Q 044266 160 DNGTPVKQQMIQLAPTMAAIHSSKLVWACIGDFNTQKIVFDFTIDNNETIKKAERLICNSTYDLEPGALDLIPEFLPIGP 239 (462)
Q Consensus 160 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~p~v~~vGp 239 (462)
+.... . ..........+.+... ....++..+.-++. . + .....++.++||
T Consensus 129 --------------~~~~~------~----~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~-~--~-~~~~~~~~~~~p 178 (318)
T PF13528_consen 129 --------------PNFWL------P----WDQDFGRLIERYIDRY--HFPPADRRLALSFY-P--P-LPPFFRVPFVGP 178 (318)
T ss_pred --------------ccCCc------c----hhhhHHHHHHHhhhhc--cCCcccceecCCcc-c--c-ccccccccccCc
Confidence 00000 0 0000000011111110 12334444443433 1 1 222345667888
Q ss_pred ccCCCCCCCCCCCCCCCCchhhHhhccCCCCcEEEEeccCccccCHHHHHHHHHHHHhCC-CCEEEEEcCCCCCcccccC
Q 044266 240 LLSSNRLGNSAGYFWPEDSTCLKWLDQQQQNSVIYVAFGSFTVFDKEQFQELASGLELTN-RPFLWVVRPDITNDAIDAY 318 (462)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~-~~~i~~~~~~~~~~~~~~~ 318 (462)
+..+.... .. ..+++.|+|++|..... .++++++..+ +++++. +...
T Consensus 179 ~~~~~~~~----------------~~-~~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~-g~~~-------- 226 (318)
T PF13528_consen 179 IIRPEIRE----------------LP-PEDEPKILVYFGGGGPG------DLIEALKALPDYQFIVF-GPNA-------- 226 (318)
T ss_pred hhcccccc----------------cC-CCCCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE-cCCc--------
Confidence 87654332 00 12355899999875432 5566666655 566655 4330
Q ss_pred chhHHHHhcCCceeeccc-C-cccccCCCCcccceeccCchhhhhhhhcCCceecccc--ccchhhhHHhHhhhheeeEE
Q 044266 319 PEGFQDRVATRRQMVGWA-P-QQKVLTHPSIACFLSHCGWNSTMEGVSNGVPFLCWPY--FADQFLNESYICDIWKVGLR 394 (462)
Q Consensus 319 ~~~~~~~~~~~v~~~~~~-p-q~~ll~~~~~~~~I~HgG~~sv~eal~~GvP~l~~P~--~~DQ~~na~~v~~~~g~g~~ 394 (462)
.+...+|+.+.++. + ..++|+.+++ +|||||+||++|++++|+|+|++|. +.||..||+++++ +|+|+.
T Consensus 227 ----~~~~~~ni~~~~~~~~~~~~~m~~ad~--vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~-~G~~~~ 299 (318)
T PF13528_consen 227 ----ADPRPGNIHVRPFSTPDFAELMAAADL--VISKGGYTTISEALALGKPALVIPRPGQDEQEYNARKLEE-LGLGIV 299 (318)
T ss_pred ----ccccCCCEEEeecChHHHHHHHHhCCE--EEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHH-CCCeEE
Confidence 11126889998877 3 4579988777 9999999999999999999999999 7899999999999 699999
Q ss_pred eecCCCCccCHHHHHHHHHHH
Q 044266 395 FNKNKNGIITREEIMKKVDQV 415 (462)
Q Consensus 395 ~~~~~~~~~~~~~l~~~i~~l 415 (462)
++. .+++++.|+++|+++
T Consensus 300 ~~~---~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 300 LSQ---EDLTPERLAEFLERL 317 (318)
T ss_pred ccc---ccCCHHHHHHHHhcC
Confidence 974 789999999999875
No 30
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.93 E-value=6.4e-24 Score=200.00 Aligned_cols=308 Identities=13% Similarity=0.130 Sum_probs=175.8
Q ss_pred EEEEEcCCCc-cChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhcCCCCCCCCeE-EEEcCCCCCCCCC-CCCHHHH
Q 044266 6 HVLAFPYPAQ-GHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNALGQNNYIGDQIK-LVSIPDGMEPEGD-RNDLGML 82 (462)
Q Consensus 6 ~Il~~~~~~~-GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~-~~~i~~~~~~~~~-~~~~~~~ 82 (462)
||++...+.. ||+.|.++|+++|.+ ||+|+|+++......+... ++. +..+|........ ..+....
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~~~~~~~~~---------~~~~~~~~p~~~~~~~~~~~~~~~~ 70 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGRSKNYISKY---------GFKVFETFPGIKLKGEDGKVNIVKT 70 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCCHHHhhhhh---------cCcceeccCCceEeecCCcCcHHHH
Confidence 5777666655 999999999999999 9999999988755555544 343 2222211000000 1122222
Q ss_pred HHHHHHhccHHHHHHHHHHhhccCCCceEEEeCCCcchHHHHHHHcCCceEEEccchhHHHHHHHhHhhhhcCCCcCCCC
Q 044266 83 TKTMVRVMPEKLEELIENINRLENEKITCVVADGSMGWVMEVAEKMKLRRAAFWPAAAGLLALSFSVQRFLDDGIVDDNG 162 (462)
Q Consensus 83 ~~~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 162 (462)
+..........+.+..+.+++ .+||+||+| +.+.+..+|+.+|||++.+..+...
T Consensus 71 l~~~~~~~~~~~~~~~~~l~~---~~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~q~~~--------------------- 125 (321)
T TIGR00661 71 LRNKEYSPKKAIRREINIIRE---YNPDLIISD-FEYSTVVAAKLLKIPVICISNQNYT--------------------- 125 (321)
T ss_pred HHhhccccHHHHHHHHHHHHh---cCCCEEEEC-CchHHHHHHHhcCCCEEEEecchhh---------------------
Confidence 211101112334445555555 999999999 6666788999999999987653211
Q ss_pred CCccccccccCCCCcccCcccchhhhhcCCCcchhhHHHHHHhhhh-hccccEEEEcCccccchhhhccCCCcc--ccCc
Q 044266 163 TPVKQQMIQLAPTMAAIHSSKLVWACIGDFNTQKIVFDFTIDNNET-IKKAERLICNSTYDLEPGALDLIPEFL--PIGP 239 (462)
Q Consensus 163 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ns~~~le~~~~~~~p~v~--~vGp 239 (462)
..|+.. +... + ..+ ..... ...++.+++..++... ...|.+. .-+|
T Consensus 126 ---------~~~~~~----~~~~--~---------~~~---~~~~~~~~~~~~~~~~~~~~~~----~~~p~~~~~~~~~ 174 (321)
T TIGR00661 126 ---------RYPLKT----DLIV--Y---------PTM---AALRIFNERCERFIVPDYPFPY----TICPKIIKNMEGP 174 (321)
T ss_pred ---------cCCccc----chhH--H---------HHH---HHHHHhccccceEeeecCCCCC----CCCccccccCCCc
Confidence 001100 0000 0 000 00011 1223333333222111 1112111 0011
Q ss_pred ccCCCCCCCCCCCCCCCCchhhHhhccCCCCcEEEEeccCccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCcccccCc
Q 044266 240 LLSSNRLGNSAGYFWPEDSTCLKWLDQQQQNSVIYVAFGSFTVFDKEQFQELASGLELTNRPFLWVVRPDITNDAIDAYP 319 (462)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~ 319 (462)
... .+...+.. .+++.|++.+|+.. .+.+++++.+.+. +.+++... . ...
T Consensus 175 ~~~---------------~~~~~~~~--~~~~~iLv~~g~~~------~~~l~~~l~~~~~-~~~i~~~~----~--~~~ 224 (321)
T TIGR00661 175 LIR---------------YDVDDVDN--YGEDYILVYIGFEY------RYKILELLGKIAN-VKFVCYSY----E--VAK 224 (321)
T ss_pred ccc---------------hhhhcccc--CCCCcEEEECCcCC------HHHHHHHHHhCCC-eEEEEeCC----C--CCc
Confidence 111 11111221 12457788888743 2345667765543 33332221 0 011
Q ss_pred hhHHHHhcCCceeecccC--cccccCCCCcccceeccCchhhhhhhhcCCceecccccc--chhhhHHhHhhhheeeEEe
Q 044266 320 EGFQDRVATRRQMVGWAP--QQKVLTHPSIACFLSHCGWNSTMEGVSNGVPFLCWPYFA--DQFLNESYICDIWKVGLRF 395 (462)
Q Consensus 320 ~~~~~~~~~~v~~~~~~p--q~~ll~~~~~~~~I~HgG~~sv~eal~~GvP~l~~P~~~--DQ~~na~~v~~~~g~g~~~ 395 (462)
. ..++|+.+.+|.| ..++|..+++ +|||||++|++|++++|+|++++|... ||..||+.+++ .|+|+.+
T Consensus 225 ~----~~~~~v~~~~~~~~~~~~~l~~ad~--vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~-~g~~~~l 297 (321)
T TIGR00661 225 N----SYNENVEIRRITTDNFKELIKNAEL--VITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLED-LGCGIAL 297 (321)
T ss_pred c----ccCCCEEEEECChHHHHHHHHhCCE--EEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHH-CCCEEEc
Confidence 1 2357888899998 3467877666 999999999999999999999999854 89999999999 5999999
Q ss_pred ecCCCCccCHHHHHHHHHHHhcCHHHH
Q 044266 396 NKNKNGIITREEIMKKVDQVLEDENFK 422 (462)
Q Consensus 396 ~~~~~~~~~~~~l~~~i~~ll~~~~~~ 422 (462)
.. .++ ++.+++.++++|+.|+
T Consensus 298 ~~---~~~---~~~~~~~~~~~~~~~~ 318 (321)
T TIGR00661 298 EY---KEL---RLLEAILDIRNMKRYK 318 (321)
T ss_pred Ch---hhH---HHHHHHHhcccccccc
Confidence 64 333 6777888888887664
No 31
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.90 E-value=2.1e-21 Score=181.56 Aligned_cols=323 Identities=17% Similarity=0.154 Sum_probs=199.5
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCC-EEEEEeCCcchH-HHHHhhcCCCCCCCCeEEEEcCCCCCCCCCC-CCHHH
Q 044266 5 PHVLAFPYPAQGHVIPLLEISQCLVKHGV-KVTFLNTDYNHK-RVVNALGQNNYIGDQIKLVSIPDGMEPEGDR-NDLGM 81 (462)
Q Consensus 5 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh-~Vt~~~~~~~~~-~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~-~~~~~ 81 (462)
++|++...++.||+.|.++|+++|.++|+ +|.++.+....+ .+.+. .++.++.++.+-...... .....
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~~~--------~~~~~~~I~~~~~~~~~~~~~~~~ 72 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLVKQ--------YGIEFELIPSGGLRRKGSLKLLKA 72 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeeccc--------cCceEEEEecccccccCcHHHHHH
Confidence 37889999999999999999999999999 588886655433 33332 278888887544433211 11222
Q ss_pred HHHHHHHhccHHHHHHHHHHhhccCCCceEEEeCCCcc--hHHHHHHHcCCceEEEccchhHHHHHHHhHhhhhcCCCcC
Q 044266 82 LTKTMVRVMPEKLEELIENINRLENEKITCVVADGSMG--WVMEVAEKMKLRRAAFWPAAAGLLALSFSVQRFLDDGIVD 159 (462)
Q Consensus 82 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~ 159 (462)
.+..+.. ....+++++. .+||+||.-..++ .+..+|..+|||++..-. +
T Consensus 73 ~~~~~~~--~~~a~~il~~------~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEq------------------n--- 123 (357)
T COG0707 73 PFKLLKG--VLQARKILKK------LKPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQ------------------N--- 123 (357)
T ss_pred HHHHHHH--HHHHHHHHHH------cCCCEEEecCCccccHHHHHHHhCCCCEEEEec------------------C---
Confidence 2222211 1223444555 9999999977666 566778889999998321 1
Q ss_pred CCCCCccccccccCCCCcccCcccchhhhhcCCCcchhhHHHHHHhhhhhccccEEEEcCccccchhhhccCCCccccCc
Q 044266 160 DNGTPVKQQMIQLAPTMAAIHSSKLVWACIGDFNTQKIVFDFTIDNNETIKKAERLICNSTYDLEPGALDLIPEFLPIGP 239 (462)
Q Consensus 160 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~p~v~~vGp 239 (462)
..+|..+ .+. .+.++.+.. +++..+. ..-..+++.+|-
T Consensus 124 ------------~~~G~an--------k~~-------------------~~~a~~V~~-~f~~~~~--~~~~~~~~~tG~ 161 (357)
T COG0707 124 ------------AVPGLAN--------KIL-------------------SKFAKKVAS-AFPKLEA--GVKPENVVVTGI 161 (357)
T ss_pred ------------CCcchhH--------HHh-------------------HHhhceeee-ccccccc--cCCCCceEEecC
Confidence 2233221 100 011222222 2222110 111125667763
Q ss_pred -ccCCCCCCCCCCCCCCCCchhhHhhccCCCCcEEEEeccCccccCHH-HHHHHHHHHHhCCCCEEEEEcCCCCCccccc
Q 044266 240 -LLSSNRLGNSAGYFWPEDSTCLKWLDQQQQNSVIYVAFGSFTVFDKE-QFQELASGLELTNRPFLWVVRPDITNDAIDA 317 (462)
Q Consensus 240 -~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~-~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~ 317 (462)
...+.... ...-.. .+...++++|+|.-||.+....+ .+..+...+.+ +.++++.++.+ .
T Consensus 162 Pvr~~~~~~---------~~~~~~-~~~~~~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~-~~~v~~~~G~~----~--- 223 (357)
T COG0707 162 PVRPEFEEL---------PAAEVR-KDGRLDKKTILVTGGSQGAKALNDLVPEALAKLAN-RIQVIHQTGKN----D--- 223 (357)
T ss_pred cccHHhhcc---------chhhhh-hhccCCCcEEEEECCcchhHHHHHHHHHHHHHhhh-CeEEEEEcCcc----h---
Confidence 33222110 000001 11112577999999998654332 23334444433 46777777765 1
Q ss_pred CchhHHHHh-cCC-ceeecccCcc-cccCCCCcccceeccCchhhhhhhhcCCceeccccc----cchhhhHHhHhhhhe
Q 044266 318 YPEGFQDRV-ATR-RQMVGWAPQQ-KVLTHPSIACFLSHCGWNSTMEGVSNGVPFLCWPYF----ADQFLNESYICDIWK 390 (462)
Q Consensus 318 ~~~~~~~~~-~~~-v~~~~~~pq~-~ll~~~~~~~~I~HgG~~sv~eal~~GvP~l~~P~~----~DQ~~na~~v~~~~g 390 (462)
.+...... ..+ +.+..|..+. .+|+-+|+ +||++|.+|+.|+++.|+|+|.+|+- .+|..||..++++ |
T Consensus 224 -~~~~~~~~~~~~~~~v~~f~~dm~~~~~~ADL--vIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~~-g 299 (357)
T COG0707 224 -LEELKSAYNELGVVRVLPFIDDMAALLAAADL--VISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEKA-G 299 (357)
T ss_pred -HHHHHHHHhhcCcEEEeeHHhhHHHHHHhccE--EEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHHhC-C
Confidence 11222122 233 6677888875 69988888 99999999999999999999999963 4899999999995 9
Q ss_pred eeEEeecCCCCccCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Q 044266 391 VGLRFNKNKNGIITREEIMKKVDQVLEDENFKARALDLKETSLN 434 (462)
Q Consensus 391 ~g~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~~~~ 434 (462)
.|..++ +.++|++.+.+.|.++++++ ++...|++..++
T Consensus 300 aa~~i~---~~~lt~~~l~~~i~~l~~~~---~~l~~m~~~a~~ 337 (357)
T COG0707 300 AALVIR---QSELTPEKLAELILRLLSNP---EKLKAMAENAKK 337 (357)
T ss_pred CEEEec---cccCCHHHHHHHHHHHhcCH---HHHHHHHHHHHh
Confidence 999998 46799999999999999884 344445555544
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.88 E-value=1.1e-20 Score=181.60 Aligned_cols=342 Identities=15% Similarity=0.137 Sum_probs=199.7
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcch--HHHHHhhcCCCCCCCCeEEEEcCCCCCCCCCCCCHHHH
Q 044266 5 PHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNH--KRVVNALGQNNYIGDQIKLVSIPDGMEPEGDRNDLGML 82 (462)
Q Consensus 5 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~--~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~ 82 (462)
+||+++..+..||...++.|++.|.++||+|++++.+... ..+++ .+++++.++..-.. ..+....
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~~~~---------~g~~~~~~~~~~~~---~~~~~~~ 69 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEARLVPK---------AGIEFHFIPSGGLR---RKGSLAN 69 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhhhcccc---------CCCcEEEEeccCcC---CCChHHH
Confidence 6899999889999999999999999999999999986531 11222 26777776532111 1122222
Q ss_pred HHHHHHhccHHHHHHHHHHhhccCCCceEEEeCCCcc--hHHHHHHHcCCceEEEccchhHHHHHHHhHhhhhcCCCcCC
Q 044266 83 TKTMVRVMPEKLEELIENINRLENEKITCVVADGSMG--WVMEVAEKMKLRRAAFWPAAAGLLALSFSVQRFLDDGIVDD 160 (462)
Q Consensus 83 ~~~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~ 160 (462)
+...... ...+..+.+.+++ .+||+|++..... .+..+++..++|++......
T Consensus 70 l~~~~~~-~~~~~~~~~~ik~---~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~--------------------- 124 (357)
T PRK00726 70 LKAPFKL-LKGVLQARKILKR---FKPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQNA--------------------- 124 (357)
T ss_pred HHHHHHH-HHHHHHHHHHHHh---cCCCEEEECCCcchhHHHHHHHHcCCCEEEEcCCC---------------------
Confidence 2222111 1223334444444 8999999996332 45566778899998632100
Q ss_pred CCCCccccccccCCCCcccCcccchhhhhcCCCcchhhHHHHHHhhhhhccccEEEEcCccccchhhhccCCCccccCcc
Q 044266 161 NGTPVKQQMIQLAPTMAAIHSSKLVWACIGDFNTQKIVFDFTIDNNETIKKAERLICNSTYDLEPGALDLIPEFLPIGPL 240 (462)
Q Consensus 161 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~p~v~~vGp~ 240 (462)
.++ .. .+. ..+.+|.+++.+...+. .....++.++|+.
T Consensus 125 ------------~~~--------~~-------------~r~------~~~~~d~ii~~~~~~~~---~~~~~~i~vi~n~ 162 (357)
T PRK00726 125 ------------VPG--------LA-------------NKL------LARFAKKVATAFPGAFP---EFFKPKAVVTGNP 162 (357)
T ss_pred ------------Ccc--------HH-------------HHH------HHHHhchheECchhhhh---ccCCCCEEEECCC
Confidence 000 00 000 01233444443332211 1223567777754
Q ss_pred cCCCCCCCCCCCCCCCCchhhHhhccCCCCcEEEEeccCccccCHHHHHHHHHHHHhCCC--CEEEEEcCCCCCcccccC
Q 044266 241 LSSNRLGNSAGYFWPEDSTCLKWLDQQQQNSVIYVAFGSFTVFDKEQFQELASGLELTNR--PFLWVVRPDITNDAIDAY 318 (462)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~--~~i~~~~~~~~~~~~~~~ 318 (462)
........ ... ..-+...++.++|++..|+... ......+.+++.+... .+++.++.+ ....+
T Consensus 163 v~~~~~~~------~~~---~~~~~~~~~~~~i~~~gg~~~~--~~~~~~l~~a~~~~~~~~~~~~~~G~g----~~~~~ 227 (357)
T PRK00726 163 VREEILAL------AAP---PARLAGREGKPTLLVVGGSQGA--RVLNEAVPEALALLPEALQVIHQTGKG----DLEEV 227 (357)
T ss_pred CChHhhcc------cch---hhhccCCCCCeEEEEECCcHhH--HHHHHHHHHHHHHhhhCcEEEEEcCCC----cHHHH
Confidence 43221110 000 0011212234566665555321 1122233355544332 345555554 11111
Q ss_pred chhHHHHhcCCceeecccC-cccccCCCCcccceeccCchhhhhhhhcCCceecccc----ccchhhhHHhHhhhheeeE
Q 044266 319 PEGFQDRVATRRQMVGWAP-QQKVLTHPSIACFLSHCGWNSTMEGVSNGVPFLCWPY----FADQFLNESYICDIWKVGL 393 (462)
Q Consensus 319 ~~~~~~~~~~~v~~~~~~p-q~~ll~~~~~~~~I~HgG~~sv~eal~~GvP~l~~P~----~~DQ~~na~~v~~~~g~g~ 393 (462)
.... + ..-++.+.+|+. ..++|+.+|+ +|+|+|.++++||+++|+|+|++|. ..||..|+..+.+ .|.|.
T Consensus 228 ~~~~-~-~~~~v~~~g~~~~~~~~~~~~d~--~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~-~~~g~ 302 (357)
T PRK00726 228 RAAY-A-AGINAEVVPFIDDMAAAYAAADL--VICRAGASTVAELAAAGLPAILVPLPHAADDHQTANARALVD-AGAAL 302 (357)
T ss_pred HHHh-h-cCCcEEEeehHhhHHHHHHhCCE--EEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHH-CCCEE
Confidence 1111 1 222377889984 4589988888 9999999999999999999999997 3689999999999 49999
Q ss_pred EeecCCCCccCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhHhhcCCCcHHHHHHHHHH
Q 044266 394 RFNKNKNGIITREEIMKKVDQVLEDENFKARALDLKETSLNSVREGGQSDKTFKNFVQW 452 (462)
Q Consensus 394 ~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 452 (462)
.++. .+++++.|+++|.++++|++.+++..+-+.+..+ ..+..+..+.+++.
T Consensus 303 ~~~~---~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 354 (357)
T PRK00726 303 LIPQ---SDLTPEKLAEKLLELLSDPERLEAMAEAARALGK----PDAAERLADLIEEL 354 (357)
T ss_pred EEEc---ccCCHHHHHHHHHHHHcCHHHHHHHHHHHHhcCC----cCHHHHHHHHHHHH
Confidence 9974 5678999999999999999887666665554432 34444444444443
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.84 E-value=8.6e-19 Score=168.10 Aligned_cols=324 Identities=15% Similarity=0.127 Sum_probs=191.0
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHH-HHHhhcCCCCCCCCeEEEEcCCCCCCCCCCCCHHHHHH
Q 044266 6 HVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKR-VVNALGQNNYIGDQIKLVSIPDGMEPEGDRNDLGMLTK 84 (462)
Q Consensus 6 ~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~-v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~ 84 (462)
||++...+..||....+.|++.|.++||+|++++....... ..+. .+++++.++-.-.. .......+.
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~---~~~~~~~~~ 69 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLEARLVPK--------AGIPLHTIPVGGLR---RKGSLKKLK 69 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcchhhcccc--------cCCceEEEEecCcC---CCChHHHHH
Confidence 58999999999999999999999999999999987643211 0111 25677666532111 112222222
Q ss_pred HHHHhccHHHHHHHHHHhhccCCCceEEEeCCCcc--hHHHHHHHcCCceEEEccchhHHHHHHHhHhhhhcCCCcCCCC
Q 044266 85 TMVRVMPEKLEELIENINRLENEKITCVVADGSMG--WVMEVAEKMKLRRAAFWPAAAGLLALSFSVQRFLDDGIVDDNG 162 (462)
Q Consensus 85 ~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 162 (462)
.+... ...+..+.+.+++ .+||+|+++.... .+..+|...|+|++.....
T Consensus 70 ~~~~~-~~~~~~~~~~i~~---~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~------------------------ 121 (350)
T cd03785 70 APFKL-LKGVLQARKILKK---FKPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQN------------------------ 121 (350)
T ss_pred HHHHH-HHHHHHHHHHHHh---cCCCEEEECCCCcchHHHHHHHHhCCCEEEEcCC------------------------
Confidence 22111 1112233333444 8999999875333 4567788889999863110
Q ss_pred CCccccccccCCCCcccCcccchhhhhcCCCcchhhHHHHHHhhhhhccccEEEEcCccccchhhhccCCCccccCcccC
Q 044266 163 TPVKQQMIQLAPTMAAIHSSKLVWACIGDFNTQKIVFDFTIDNNETIKKAERLICNSTYDLEPGALDLIPEFLPIGPLLS 242 (462)
Q Consensus 163 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~p~v~~vGp~~~ 242 (462)
..++ .. .+. ..+.++.+++.+....+. -...++..+|....
T Consensus 122 ---------~~~~--------~~-------------~~~------~~~~~~~vi~~s~~~~~~---~~~~~~~~i~n~v~ 162 (350)
T cd03785 122 ---------AVPG--------LA-------------NRL------LARFADRVALSFPETAKY---FPKDKAVVTGNPVR 162 (350)
T ss_pred ---------CCcc--------HH-------------HHH------HHHhhCEEEEcchhhhhc---CCCCcEEEECCCCc
Confidence 0000 00 000 112356666666544332 11246666765433
Q ss_pred CCCCCCCCCCCCCCCchhhHhhccCCCCcEEEEeccCccccCH-HHHHHHHHHHHhCCCCEEEEEcCCCCCcccccCchh
Q 044266 243 SNRLGNSAGYFWPEDSTCLKWLDQQQQNSVIYVAFGSFTVFDK-EQFQELASGLELTNRPFLWVVRPDITNDAIDAYPEG 321 (462)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~-~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~ 321 (462)
..... ..+ . .......+++++|++..|+...... +.+..++..+...+..+++.++.+ ....+.+.
T Consensus 163 ~~~~~-------~~~-~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~g----~~~~l~~~ 229 (350)
T cd03785 163 EEILA-------LDR-E-RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLRKRLQVIHQTGKG----DLEEVKKA 229 (350)
T ss_pred hHHhh-------hhh-h-HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcCCc----cHHHHHHH
Confidence 22111 000 0 1222222345566666666532211 222233344443344455566544 11111111
Q ss_pred HHHHhcCCceeeccc-CcccccCCCCcccceeccCchhhhhhhhcCCceecccc----ccchhhhHHhHhhhheeeEEee
Q 044266 322 FQDRVATRRQMVGWA-PQQKVLTHPSIACFLSHCGWNSTMEGVSNGVPFLCWPY----FADQFLNESYICDIWKVGLRFN 396 (462)
Q Consensus 322 ~~~~~~~~v~~~~~~-pq~~ll~~~~~~~~I~HgG~~sv~eal~~GvP~l~~P~----~~DQ~~na~~v~~~~g~g~~~~ 396 (462)
.. ...+|+++.+|+ ....+|+.+++ +|+++|.+|++||+.+|+|+|+.|. ..+|..|+..+.+ .|.|..++
T Consensus 230 ~~-~~~~~v~~~g~~~~~~~~l~~ad~--~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~-~g~g~~v~ 305 (350)
T cd03785 230 YE-ELGVNYEVFPFIDDMAAAYAAADL--VISRAGASTVAELAALGLPAILIPLPYAADDHQTANARALVK-AGAAVLIP 305 (350)
T ss_pred Hh-ccCCCeEEeehhhhHHHHHHhcCE--EEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHh-CCCEEEEe
Confidence 11 113689999998 34579988887 9999999999999999999999985 4678899999998 49999996
Q ss_pred cCCCCccCHHHHHHHHHHHhcCHHHHHHHHH
Q 044266 397 KNKNGIITREEIMKKVDQVLEDENFKARALD 427 (462)
Q Consensus 397 ~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~ 427 (462)
. ...+++++.++|+++++|++.+++...
T Consensus 306 ~---~~~~~~~l~~~i~~ll~~~~~~~~~~~ 333 (350)
T cd03785 306 Q---EELTPERLAAALLELLSDPERLKAMAE 333 (350)
T ss_pred c---CCCCHHHHHHHHHHHhcCHHHHHHHHH
Confidence 4 346899999999999998866554433
No 34
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.80 E-value=6.9e-18 Score=162.33 Aligned_cols=350 Identities=11% Similarity=0.023 Sum_probs=198.6
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcCCCCCCCCCCCCHHHHHH
Q 044266 5 PHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIPDGMEPEGDRNDLGMLTK 84 (462)
Q Consensus 5 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~ 84 (462)
.||++...++.||++|. +|+++|.++|++|.|++.... .+++.+.. .++.+..++ ...+.+.+.
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg~--~m~~~g~~-----~~~~~~~l~--------v~G~~~~l~ 69 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAGP--RMAAEGCE-----VLYSMEELS--------VMGLREVLG 69 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEccH--HHHhCcCc-----cccChHHhh--------hccHHHHHH
Confidence 58999999999999999 999999999999999997532 34443110 023333222 112222222
Q ss_pred HHHHhccHHHHHHHHHHhhccCCCceEEEeCCCcc-h--HHHHHHHcCCceEEEccchhHHHHHHHhHhhhhcCCCcCCC
Q 044266 85 TMVRVMPEKLEELIENINRLENEKITCVVADGSMG-W--VMEVAEKMKLRRAAFWPAAAGLLALSFSVQRFLDDGIVDDN 161 (462)
Q Consensus 85 ~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~-~--~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 161 (462)
.+.. ....+.++.+.+++ .+||+||.-.+.. . ....|+.+|||++.+.+.-.+
T Consensus 70 ~~~~-~~~~~~~~~~~l~~---~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~P~~w-------------------- 125 (385)
T TIGR00215 70 RLGR-LLKIRKEVVQLAKQ---AKPDLLVGIDAPDFNLTKELKKKDPGIKIIYYISPQVW-------------------- 125 (385)
T ss_pred HHHH-HHHHHHHHHHHHHh---cCCCEEEEeCCCCccHHHHHHHhhCCCCEEEEeCCcHh--------------------
Confidence 2211 12223344445555 9999999754422 2 223788999999975421100
Q ss_pred CCCccccccccCCCCcccCcccchhhhhcCCCcchhhHHHHHHhhhhhccccEEEEcCccccchhhhccCCCccccCccc
Q 044266 162 GTPVKQQMIQLAPTMAAIHSSKLVWACIGDFNTQKIVFDFTIDNNETIKKAERLICNSTYDLEPGALDLIPEFLPIGPLL 241 (462)
Q Consensus 162 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~p~v~~vGp~~ 241 (462)
.+. ....+. ..+.+|.+++.+..+.+.- ....-++.+||.-.
T Consensus 126 -------------------------aw~--~~~~r~----------l~~~~d~v~~~~~~e~~~~-~~~g~~~~~vGnPv 167 (385)
T TIGR00215 126 -------------------------AWR--KWRAKK----------IEKATDFLLAILPFEKAFY-QKKNVPCRFVGHPL 167 (385)
T ss_pred -------------------------hcC--cchHHH----------HHHHHhHhhccCCCcHHHH-HhcCCCEEEECCch
Confidence 000 000111 1123455555443332221 12223556677443
Q ss_pred CCCCCCCCCCCCCCCCchhhHhhccCCCCcEEEEeccCccccCHHHHHHHHHHHHhC-----CCCEEEEEcCCCCCcccc
Q 044266 242 SSNRLGNSAGYFWPEDSTCLKWLDQQQQNSVIYVAFGSFTVFDKEQFQELASGLELT-----NRPFLWVVRPDITNDAID 316 (462)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~-----~~~~i~~~~~~~~~~~~~ 316 (462)
.+.... ..+...+..+-+.-.+++++|.+..||....-......++++++.. +.++++....... .
T Consensus 168 ~~~~~~-----~~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~~~----~ 238 (385)
T TIGR00215 168 LDAIPL-----YKPDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVNFKR----R 238 (385)
T ss_pred hhhccc-----cCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCCchh----H
Confidence 222110 0011112222233334567888888887543233445555444322 2345444333200 0
Q ss_pred cCchhHHHHhc--CCceeecccCcccccCCCCcccceeccCchhhhhhhhcCCceecc----cccc---------chhhh
Q 044266 317 AYPEGFQDRVA--TRRQMVGWAPQQKVLTHPSIACFLSHCGWNSTMEGVSNGVPFLCW----PYFA---------DQFLN 381 (462)
Q Consensus 317 ~~~~~~~~~~~--~~v~~~~~~pq~~ll~~~~~~~~I~HgG~~sv~eal~~GvP~l~~----P~~~---------DQ~~n 381 (462)
..-+.+.+... ..+.+..+ ....+|+.+|+ +|+-+|..|+ |++++|+|+|++ |+.. .|..|
T Consensus 239 ~~~~~~~~~~~~~~~v~~~~~-~~~~~l~aADl--~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~ 314 (385)
T TIGR00215 239 LQFEQIKAEYGPDLQLHLIDG-DARKAMFAADA--ALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLVKTDYISL 314 (385)
T ss_pred HHHHHHHHHhCCCCcEEEECc-hHHHHHHhCCE--EeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeec
Confidence 00011111121 22333322 23468888887 9999999988 999999999999 7632 38889
Q ss_pred HHhHhhhheeeEEeecCCCCccCHHHHHHHHHHHhcCH----HHHHHHHHHHHHHHhHhhcCCCcHHHHHHH
Q 044266 382 ESYICDIWKVGLRFNKNKNGIITREEIMKKVDQVLEDE----NFKARALDLKETSLNSVREGGQSDKTFKNF 449 (462)
Q Consensus 382 a~~v~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ll~~~----~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~ 449 (462)
+..++.+ ++..++. +.++|++.|.+.+.++|+|+ +++++.+.--+++++...++|.+.+.-+.+
T Consensus 315 ~nil~~~-~~~pel~---q~~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~i 382 (385)
T TIGR00215 315 PNILANR-LLVPELL---QEECTPHPLAIALLLLLENGLKAYKEMHRERQFFEELRQRIYCNADSERAAQAV 382 (385)
T ss_pred cHHhcCC-ccchhhc---CCCCCHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 9999995 9998886 47799999999999999999 777666666666666665566665544443
No 35
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.78 E-value=5.2e-17 Score=155.66 Aligned_cols=316 Identities=18% Similarity=0.187 Sum_probs=176.5
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchH-HHHHhhcCCCCCCCCeEEEEcCCCCCCCCCCCCHHHHHH
Q 044266 6 HVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHK-RVVNALGQNNYIGDQIKLVSIPDGMEPEGDRNDLGMLTK 84 (462)
Q Consensus 6 ~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~-~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~ 84 (462)
||+|++.+..||+.....||++|.++||+|++++.+.... ...+. .+++++.++-.-.. ..++.+.+.
T Consensus 2 ~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~~~~~~~--------~g~~~~~i~~~~~~---~~~~~~~l~ 70 (348)
T TIGR01133 2 KVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLEKRLVPK--------AGIEFYFIPVGGLR---RKGSFRLIK 70 (348)
T ss_pred eEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcchhccccc--------CCCceEEEeccCcC---CCChHHHHH
Confidence 8999999999999988899999999999999998744211 11110 26777766532111 122323332
Q ss_pred HHHHhccHHHHHHHHHHhhccCCCceEEEeCCCcc--hHHHHHHHcCCceEEEccchhHHHHHHHhHhhhhcCCCcCCCC
Q 044266 85 TMVRVMPEKLEELIENINRLENEKITCVVADGSMG--WVMEVAEKMKLRRAAFWPAAAGLLALSFSVQRFLDDGIVDDNG 162 (462)
Q Consensus 85 ~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 162 (462)
..... ...+..+.+.+++ .+||+|++..... .+..+++.+++|++.+.. ..
T Consensus 71 ~~~~~-~~~~~~l~~~i~~---~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~~~-~~---------------------- 123 (348)
T TIGR01133 71 TPLKL-LKAVFQARRILKK---FKPDAVIGFGGYVSGPAGLAAKLLGIPLFHHEQ-NA---------------------- 123 (348)
T ss_pred HHHHH-HHHHHHHHHHHHh---cCCCEEEEcCCcccHHHHHHHHHcCCCEEEECC-CC----------------------
Confidence 22111 1123333334444 9999999986443 344568888999974211 00
Q ss_pred CCccccccccCCCCcccCcccchhhhhcCCCcchhhHHHHHHhhhhhccccEEEEcCccccchhhhccCCCccccCcccC
Q 044266 163 TPVKQQMIQLAPTMAAIHSSKLVWACIGDFNTQKIVFDFTIDNNETIKKAERLICNSTYDLEPGALDLIPEFLPIGPLLS 242 (462)
Q Consensus 163 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~p~v~~vGp~~~ 242 (462)
.++ . ..+. ..+.++.+++.+...-++- ...++|.-..
T Consensus 124 ----------~~~--------~-------------~~~~------~~~~~d~ii~~~~~~~~~~------~~~~i~n~v~ 160 (348)
T TIGR01133 124 ----------VPG--------L-------------TNKL------LSRFAKKVLISFPGAKDHF------EAVLVGNPVR 160 (348)
T ss_pred ----------Ccc--------H-------------HHHH------HHHHhCeeEECchhHhhcC------CceEEcCCcC
Confidence 000 0 0000 1134566666554322211 1234443221
Q ss_pred CCCCCCCCCCCCCCCchhhHhhccCCCCcEEEEeccCccccCHHHHHHHHHHH---HhCCCCEEEEEcCCCCCcccccCc
Q 044266 243 SNRLGNSAGYFWPEDSTCLKWLDQQQQNSVIYVAFGSFTVFDKEQFQELASGL---ELTNRPFLWVVRPDITNDAIDAYP 319 (462)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~---~~~~~~~i~~~~~~~~~~~~~~~~ 319 (462)
...... .... ..+...+++++|.+..|+... ......+.+++ ...+.++++..+.+ ..
T Consensus 161 ~~~~~~-----~~~~----~~~~~~~~~~~i~~~gg~~~~--~~~~~~l~~a~~~l~~~~~~~~~~~g~~----~~---- 221 (348)
T TIGR01133 161 QEIRSL-----PVPR----ERFGLREGKPTILVLGGSQGA--KILNELVPKALAKLAEKGIQIVHQTGKN----DL---- 221 (348)
T ss_pred HHHhcc-----cchh----hhcCCCCCCeEEEEECCchhH--HHHHHHHHHHHHHHhhcCcEEEEECCcc----hH----
Confidence 110000 0000 112222234455444455432 22122233343 33345565544433 11
Q ss_pred hhHHHHhcC-Cc-eeeccc--CcccccCCCCcccceeccCchhhhhhhhcCCceeccccc---cchhhhHHhHhhhheee
Q 044266 320 EGFQDRVAT-RR-QMVGWA--PQQKVLTHPSIACFLSHCGWNSTMEGVSNGVPFLCWPYF---ADQFLNESYICDIWKVG 392 (462)
Q Consensus 320 ~~~~~~~~~-~v-~~~~~~--pq~~ll~~~~~~~~I~HgG~~sv~eal~~GvP~l~~P~~---~DQ~~na~~v~~~~g~g 392 (462)
+.+.+.... +. .++.+. +-..+|+.+|+ +|+++|.+|++||+++|+|+|+.|.. .+|..|+..+++ .|.|
T Consensus 222 ~~l~~~~~~~~l~~~v~~~~~~~~~~l~~ad~--~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~-~~~G 298 (348)
T TIGR01133 222 EKVKNVYQELGIEAIVTFIDENMAAAYAAADL--VISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLED-LGAG 298 (348)
T ss_pred HHHHHHHhhCCceEEecCcccCHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHH-CCCE
Confidence 222222211 11 233344 34578988888 99999988999999999999999863 468889999998 4999
Q ss_pred EEeecCCCCccCHHHHHHHHHHHhcCHHHHHHHHH
Q 044266 393 LRFNKNKNGIITREEIMKKVDQVLEDENFKARALD 427 (462)
Q Consensus 393 ~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~ 427 (462)
..++. ++.++++|.++|+++++|++.+++..+
T Consensus 299 ~~~~~---~~~~~~~l~~~i~~ll~~~~~~~~~~~ 330 (348)
T TIGR01133 299 LVIRQ---KELLPEKLLEALLKLLLDPANLEAMAE 330 (348)
T ss_pred EEEec---ccCCHHHHHHHHHHHHcCHHHHHHHHH
Confidence 98863 556899999999999999876654433
No 36
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.77 E-value=3.5e-17 Score=158.58 Aligned_cols=141 Identities=16% Similarity=0.272 Sum_probs=101.2
Q ss_pred CCcEEEEeccCccccCHHHHHHHHHHHHhC-CCCEEEEEcCCCCCcccccCchhHHH---HhcCCceeecccCcc-cccC
Q 044266 269 QNSVIYVAFGSFTVFDKEQFQELASGLELT-NRPFLWVVRPDITNDAIDAYPEGFQD---RVATRRQMVGWAPQQ-KVLT 343 (462)
Q Consensus 269 ~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~pq~-~ll~ 343 (462)
+++++++..|+.... ..+..+++++.+. +.++++..+.+ ..+.+.+.+ ..++|+++.+|+++. .+|+
T Consensus 201 ~~~~il~~~G~~~~~--k~~~~li~~l~~~~~~~~viv~G~~------~~~~~~l~~~~~~~~~~v~~~g~~~~~~~l~~ 272 (380)
T PRK13609 201 NKKILLIMAGAHGVL--GNVKELCQSLMSVPDLQVVVVCGKN------EALKQSLEDLQETNPDALKVFGYVENIDELFR 272 (380)
T ss_pred CCcEEEEEcCCCCCC--cCHHHHHHHHhhCCCcEEEEEeCCC------HHHHHHHHHHHhcCCCcEEEEechhhHHHHHH
Confidence 456788877876532 2345667776543 45666666533 111122221 223589999999874 7999
Q ss_pred CCCcccceeccCchhhhhhhhcCCceecc-ccccchhhhHHhHhhhheeeEEeecCCCCccCHHHHHHHHHHHhcCHHHH
Q 044266 344 HPSIACFLSHCGWNSTMEGVSNGVPFLCW-PYFADQFLNESYICDIWKVGLRFNKNKNGIITREEIMKKVDQVLEDENFK 422 (462)
Q Consensus 344 ~~~~~~~I~HgG~~sv~eal~~GvP~l~~-P~~~DQ~~na~~v~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~ 422 (462)
.+|+ +|+.+|..|++||+++|+|+|+. |..+.|..|+..+++. |.|+.. .+++++.++|.++++|++.+
T Consensus 273 ~aD~--~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~~-G~~~~~-------~~~~~l~~~i~~ll~~~~~~ 342 (380)
T PRK13609 273 VTSC--MITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFERK-GAAVVI-------RDDEEVFAKTEALLQDDMKL 342 (380)
T ss_pred hccE--EEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHhC-CcEEEE-------CCHHHHHHHHHHHHCCHHHH
Confidence 9888 99999988999999999999985 6667778899888884 998865 36899999999999998765
Q ss_pred HHHHH
Q 044266 423 ARALD 427 (462)
Q Consensus 423 ~~a~~ 427 (462)
++.++
T Consensus 343 ~~m~~ 347 (380)
T PRK13609 343 LQMKE 347 (380)
T ss_pred HHHHH
Confidence 54443
No 37
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.75 E-value=7.2e-16 Score=137.22 Aligned_cols=333 Identities=14% Similarity=0.141 Sum_probs=199.6
Q ss_pred CCCEEEEEcCC--CccChHHHHHHHHHHHhC--CCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcCCCCCCCC---C
Q 044266 3 RRPHVLAFPYP--AQGHVIPLLEISQCLVKH--GVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIPDGMEPEG---D 75 (462)
Q Consensus 3 ~~~~Il~~~~~--~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~---~ 75 (462)
+++||+|.+.- +-||+..+..+|.+|++. |.+|++++.........-. .|+.|+.+|.-...+. .
T Consensus 8 ~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~~--------~gVd~V~LPsl~k~~~G~~~ 79 (400)
T COG4671 8 KRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPGP--------AGVDFVKLPSLIKGDNGEYG 79 (400)
T ss_pred ccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCCc--------ccCceEecCceEecCCCcee
Confidence 45699999965 559999999999999986 9999999988766544332 4899999994332221 0
Q ss_pred CCCHHHHHHHHHHhccHHHHHHHHHHhhccCCCceEEEeCCCcchHHHHHHHcCCceEEEccchhHHHHHHHhHhhhhcC
Q 044266 76 RNDLGMLTKTMVRVMPEKLEELIENINRLENEKITCVVADGSMGWVMEVAEKMKLRRAAFWPAAAGLLALSFSVQRFLDD 155 (462)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~ 155 (462)
..+...-.+.+.+.-...+...++. .+||++|+|.+-+ ++. -+ + .|.. .|.. ..
T Consensus 80 ~~d~~~~l~e~~~~Rs~lil~t~~~------fkPDi~IVd~~P~-Glr-~E-L-~ptL-----------~yl~-----~~ 133 (400)
T COG4671 80 LVDLDGDLEETKKLRSQLILSTAET------FKPDIFIVDKFPF-GLR-FE-L-LPTL-----------EYLK-----TT 133 (400)
T ss_pred eeecCCCHHHHHHHHHHHHHHHHHh------cCCCEEEEecccc-chh-hh-h-hHHH-----------HHHh-----hc
Confidence 0011001333332222333333344 9999999995433 311 01 0 0000 0000 00
Q ss_pred CCcCCCCCCccccccccCCCCcccCcccchhhhhcCCCcchhhHHHHHHhhhhhccccEEEEcCccccchhhhcc-----
Q 044266 156 GIVDDNGTPVKQQMIQLAPTMAAIHSSKLVWACIGDFNTQKIVFDFTIDNNETIKKAERLICNSTYDLEPGALDL----- 230 (462)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~----- 230 (462)
+ .. .+-++. ...+.+ .........+....... +.-|.+++-.+|.|--+...+
T Consensus 134 ~-t~------------~vL~lr--~i~D~p-~~~~~~w~~~~~~~~I~------r~yD~V~v~GdP~f~d~~~~~~~~~~ 191 (400)
T COG4671 134 G-TR------------LVLGLR--SIRDIP-QELEADWRRAETVRLIN------RFYDLVLVYGDPDFYDPLTEFPFAPA 191 (400)
T ss_pred C-Cc------------ceeehH--hhhhch-hhhccchhhhHHHHHHH------HhheEEEEecCccccChhhcCCccHh
Confidence 0 00 000000 001111 11111111111111111 344778888888764432222
Q ss_pred -CCCccccCcccCCCCCCCCCCCCCCCCchhhHhhccCCCCcEEEEeccCccccCHHHHHHHHHHHHh-CCCC--EEEEE
Q 044266 231 -IPEFLPIGPLLSSNRLGNSAGYFWPEDSTCLKWLDQQQQNSVIYVAFGSFTVFDKEQFQELASGLEL-TNRP--FLWVV 306 (462)
Q Consensus 231 -~p~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~-~~~~--~i~~~ 306 (462)
-.+++|+|.+....+.. +. +++. . +.+-.|+||-|. +....++....+.|-.. .+.+ .++++
T Consensus 192 i~~k~~ytG~vq~~~~~~-~~--p~~~---------~-pE~~~Ilvs~GG-G~dG~eLi~~~l~A~~~l~~l~~~~~ivt 257 (400)
T COG4671 192 IRAKMRYTGFVQRSLPHL-PL--PPHE---------A-PEGFDILVSVGG-GADGAELIETALAAAQLLAGLNHKWLIVT 257 (400)
T ss_pred hhhheeEeEEeeccCcCC-CC--CCcC---------C-CccceEEEecCC-ChhhHHHHHHHHHHhhhCCCCCcceEEEe
Confidence 24899999993321111 10 0111 0 224488888886 44456667776666533 3443 55566
Q ss_pred cCCCCCcccccCchhHHHH----hc--CCceeecccCcc-cccCCCCcccceeccCchhhhhhhhcCCceeccccc---c
Q 044266 307 RPDITNDAIDAYPEGFQDR----VA--TRRQMVGWAPQQ-KVLTHPSIACFLSHCGWNSTMEGVSNGVPFLCWPYF---A 376 (462)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~----~~--~~v~~~~~~pq~-~ll~~~~~~~~I~HgG~~sv~eal~~GvP~l~~P~~---~ 376 (462)
++. .|.....+ .+ +++.+..|-.+. .+++.++. +|+-||+||++|-|.+|+|.+++|.. -
T Consensus 258 GP~--------MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~~--vVSm~GYNTvCeILs~~k~aLivPr~~p~e 327 (400)
T COG4671 258 GPF--------MPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGARL--VVSMGGYNTVCEILSFGKPALIVPRAAPRE 327 (400)
T ss_pred CCC--------CCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhhe--eeecccchhhhHHHhCCCceEEeccCCCcH
Confidence 655 44433222 23 678888998875 68988777 99999999999999999999999975 4
Q ss_pred chhhhHHhHhhhheeeEEeecCCCCccCHHHHHHHHHHHhcCH
Q 044266 377 DQFLNESYICDIWKVGLRFNKNKNGIITREEIMKKVDQVLEDE 419 (462)
Q Consensus 377 DQ~~na~~v~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ll~~~ 419 (462)
||..-|+|+++ +|+.-.+.. +++++..++++|...++-|
T Consensus 328 EQliRA~Rl~~-LGL~dvL~p---e~lt~~~La~al~~~l~~P 366 (400)
T COG4671 328 EQLIRAQRLEE-LGLVDVLLP---ENLTPQNLADALKAALARP 366 (400)
T ss_pred HHHHHHHHHHh-cCcceeeCc---ccCChHHHHHHHHhcccCC
Confidence 99999999999 899999975 6799999999999999733
No 38
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.74 E-value=2.8e-16 Score=144.16 Aligned_cols=250 Identities=16% Similarity=0.149 Sum_probs=150.3
Q ss_pred CccChHHHHHHHHHHHhCCCEEEEEeCCcch---HHHHHhhcCCCCCCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHhc
Q 044266 14 AQGHVIPLLEISQCLVKHGVKVTFLNTDYNH---KRVVNALGQNNYIGDQIKLVSIPDGMEPEGDRNDLGMLTKTMVRVM 90 (462)
Q Consensus 14 ~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~---~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 90 (462)
+.||+..++.||++|.++||+|+|++..... +.+++. ++.+..+++... .
T Consensus 13 G~GHv~Rcl~LA~~l~~~g~~v~f~~~~~~~~~~~~i~~~---------g~~v~~~~~~~~------------------~ 65 (279)
T TIGR03590 13 GLGHVMRCLTLARALHAQGAEVAFACKPLPGDLIDLLLSA---------GFPVYELPDESS------------------R 65 (279)
T ss_pred cccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHc---------CCeEEEecCCCc------------------h
Confidence 6799999999999999999999999987644 344444 888888765311 0
Q ss_pred cHHHHHHHHHHhhccCCCceEEEeCCCcchHH--HHHHHcCCceEEEccchhHHHHHHHhHhhhhcCCCcCCCCCCcccc
Q 044266 91 PEKLEELIENINRLENEKITCVVADGSMGWVM--EVAEKMKLRRAAFWPAAAGLLALSFSVQRFLDDGIVDDNGTPVKQQ 168 (462)
Q Consensus 91 ~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~~~~--~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 168 (462)
.....++++.++. .+||+||+|.+..... ...+..+.+.+.+.-....
T Consensus 66 ~~d~~~~~~~l~~---~~~d~vV~D~y~~~~~~~~~~k~~~~~l~~iDD~~~~--------------------------- 115 (279)
T TIGR03590 66 YDDALELINLLEE---EKFDILIVDHYGLDADWEKLIKEFGRKILVIDDLADR--------------------------- 115 (279)
T ss_pred hhhHHHHHHHHHh---cCCCEEEEcCCCCCHHHHHHHHHhCCeEEEEecCCCC---------------------------
Confidence 1223344445544 8999999998655222 2233445555553211100
Q ss_pred ccccCCCCcccCcccchhhhhcCCCcchhhHHHHHHhhhhhccccEEEEcCccccchh-hhc-cC-CCccccCc---ccC
Q 044266 169 MIQLAPTMAAIHSSKLVWACIGDFNTQKIVFDFTIDNNETIKKAERLICNSTYDLEPG-ALD-LI-PEFLPIGP---LLS 242 (462)
Q Consensus 169 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~-~~~-~~-p~v~~vGp---~~~ 242 (462)
...+|.++..+. ..+.- ... .+ ...+..|+ +..
T Consensus 116 ----------------------------------------~~~~D~vin~~~-~~~~~~y~~~~~~~~~~l~G~~Y~~lr 154 (279)
T TIGR03590 116 ----------------------------------------PHDCDLLLDQNL-GADASDYQGLVPANCRLLLGPSYALLR 154 (279)
T ss_pred ----------------------------------------CcCCCEEEeCCC-CcCHhHhcccCcCCCeEEecchHHhhh
Confidence 001233322222 11110 011 11 13445565 222
Q ss_pred CCCCCCCCCCCCCCCchhhHhhccCCCCcEEEEeccCccccCHHHHHHHHHHHHhC--CCCEEEEEcCCCCCcccccCch
Q 044266 243 SNRLGNSAGYFWPEDSTCLKWLDQQQQNSVIYVAFGSFTVFDKEQFQELASGLELT--NRPFLWVVRPDITNDAIDAYPE 320 (462)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~--~~~~i~~~~~~~~~~~~~~~~~ 320 (462)
+.... .. ......++.+.|++++|.... ......+++++... +.++.++++++. +..+
T Consensus 155 ~eF~~--------~~----~~~~~~~~~~~iLi~~GG~d~--~~~~~~~l~~l~~~~~~~~i~vv~G~~~------~~~~ 214 (279)
T TIGR03590 155 EEFYQ--------LA----TANKRRKPLRRVLVSFGGADP--DNLTLKLLSALAESQINISITLVTGSSN------PNLD 214 (279)
T ss_pred HHHHH--------hh----HhhhcccccCeEEEEeCCcCC--cCHHHHHHHHHhccccCceEEEEECCCC------cCHH
Confidence 11100 00 000011123589999986543 22445566666543 456777777651 2223
Q ss_pred hHHHH--hcCCceeecccCcc-cccCCCCcccceeccCchhhhhhhhcCCceeccccccchhhhHHh
Q 044266 321 GFQDR--VATRRQMVGWAPQQ-KVLTHPSIACFLSHCGWNSTMEGVSNGVPFLCWPYFADQFLNESY 384 (462)
Q Consensus 321 ~~~~~--~~~~v~~~~~~pq~-~ll~~~~~~~~I~HgG~~sv~eal~~GvP~l~~P~~~DQ~~na~~ 384 (462)
.+.+. ...|+.+..++++. .+|+.+|+ +||+|| +|++|+++.|+|+|++|...+|..||+.
T Consensus 215 ~l~~~~~~~~~i~~~~~~~~m~~lm~~aDl--~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 215 ELKKFAKEYPNIILFIDVENMAELMNEADL--AIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred HHHHHHHhCCCEEEEeCHHHHHHHHHHCCE--EEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 33322 24588889999985 79999888 999999 9999999999999999999999999975
No 39
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.69 E-value=3.9e-15 Score=144.41 Aligned_cols=348 Identities=10% Similarity=0.050 Sum_probs=174.8
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcCCCCCCCCCCCCHHHHHH
Q 044266 5 PHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIPDGMEPEGDRNDLGMLTK 84 (462)
Q Consensus 5 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~ 84 (462)
+||++...+..||++|.. ++++|.++++++.++..... .+++.... .++.++.++ ...+.+.+.
T Consensus 2 ~ki~i~~Ggt~G~i~~a~-l~~~L~~~~~~~~~~~~~~~--~~~~~~~~-----~~~~~~~l~--------~~g~~~~~~ 65 (380)
T PRK00025 2 LRIAIVAGEVSGDLLGAG-LIRALKARAPNLEFVGVGGP--RMQAAGCE-----SLFDMEELA--------VMGLVEVLP 65 (380)
T ss_pred ceEEEEecCcCHHHHHHH-HHHHHHhcCCCcEEEEEccH--HHHhCCCc-----cccCHHHhh--------hccHHHHHH
Confidence 489999999999999999 99999998888888775432 23333110 122222222 112222222
Q ss_pred HHHHhccHHHHHHHHHHhhccCCCceEEEeCCCc-chH--HHHHHHcCCceEEEccchhHHHHHHHhHhhhhcCCCcCCC
Q 044266 85 TMVRVMPEKLEELIENINRLENEKITCVVADGSM-GWV--MEVAEKMKLRRAAFWPAAAGLLALSFSVQRFLDDGIVDDN 161 (462)
Q Consensus 85 ~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~-~~~--~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 161 (462)
.+.. ....+..+.+.++. .+||+|+.-.+. .+. ...|...|||++.+.....+
T Consensus 66 ~~~~-~~~~~~~~~~~l~~---~kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~~~~~~~-------------------- 121 (380)
T PRK00025 66 RLPR-LLKIRRRLKRRLLA---EPPDVFIGIDAPDFNLRLEKKLRKAGIPTIHYVSPSVW-------------------- 121 (380)
T ss_pred HHHH-HHHHHHHHHHHHHH---cCCCEEEEeCCCCCCHHHHHHHHHCCCCEEEEeCCchh--------------------
Confidence 2211 11123333344444 999999874321 233 33467789998864221100
Q ss_pred CCCccccccccCCCCcccCcccchhhhhcCCCcchhhHHHHHHhhhhhccccEEEEcCccccchhhhccCCCccccCccc
Q 044266 162 GTPVKQQMIQLAPTMAAIHSSKLVWACIGDFNTQKIVFDFTIDNNETIKKAERLICNSTYDLEPGALDLIPEFLPIGPLL 241 (462)
Q Consensus 162 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~p~v~~vGp~~ 241 (462)
.+.++. .. ...+.++.+++.+....+.- ....-++.++|.-.
T Consensus 122 ---------~~~~~~----------------------~~------~~~~~~d~i~~~~~~~~~~~-~~~g~~~~~~G~p~ 163 (380)
T PRK00025 122 ---------AWRQGR----------------------AF------KIAKATDHVLALFPFEAAFY-DKLGVPVTFVGHPL 163 (380)
T ss_pred ---------hcCchH----------------------HH------HHHHHHhhheeCCccCHHHH-HhcCCCeEEECcCH
Confidence 000000 00 01223455555543322221 11112366666332
Q ss_pred CCCCCCCCCCCCCCCCchhhHhhccCCCCcEEEEeccCccccCHHHHHHHHHHHHh---C--CCCEEEEEcCCCCCcccc
Q 044266 242 SSNRLGNSAGYFWPEDSTCLKWLDQQQQNSVIYVAFGSFTVFDKEQFQELASGLEL---T--NRPFLWVVRPDITNDAID 316 (462)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~---~--~~~~i~~~~~~~~~~~~~ 316 (462)
.+.... .+....+...+.-.+++++|++..||...........++++++. . +.++++..+.+
T Consensus 164 ~~~~~~------~~~~~~~~~~l~~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~~------- 230 (380)
T PRK00025 164 ADAIPL------LPDRAAARARLGLDPDARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLVNP------- 230 (380)
T ss_pred HHhccc------ccChHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCh-------
Confidence 221100 01112222223322345577777777543322234444444422 1 33566654422
Q ss_pred cCchhHHHHhc----CCceeecccCc-ccccCCCCcccceeccCchhhhhhhhcCCceecccccc--------chhhh--
Q 044266 317 AYPEGFQDRVA----TRRQMVGWAPQ-QKVLTHPSIACFLSHCGWNSTMEGVSNGVPFLCWPYFA--------DQFLN-- 381 (462)
Q Consensus 317 ~~~~~~~~~~~----~~v~~~~~~pq-~~ll~~~~~~~~I~HgG~~sv~eal~~GvP~l~~P~~~--------DQ~~n-- 381 (462)
...+.+.+... -++.+.. ++ ..+++.+|+ +|+.+|.+++ |++++|+|+|+.|... .|..|
T Consensus 231 ~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~aDl--~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~~ 305 (380)
T PRK00025 231 KRREQIEEALAEYAGLEVTLLD--GQKREAMAAADA--ALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVPY 305 (380)
T ss_pred hhHHHHHHHHhhcCCCCeEEEc--ccHHHHHHhCCE--EEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCCe
Confidence 01122222221 1233322 22 468888888 9999999888 9999999999885321 12222
Q ss_pred ---HHhHhhhheeeEEeecCCCCccCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhHhhcCCCcHHHHHHHHHHH
Q 044266 382 ---ESYICDIWKVGLRFNKNKNGIITREEIMKKVDQVLEDENFKARALDLKETSLNSVREGGQSDKTFKNFVQWI 453 (462)
Q Consensus 382 ---a~~v~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 453 (462)
+..+++. +++..+. ....+++.+.++|.++++|++.+++..+-.+.+.+.. ..+.+.+..+.+.+.+
T Consensus 306 ~~l~~~~~~~-~~~~~~~---~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~i~~~~ 375 (380)
T PRK00025 306 VSLPNLLAGR-ELVPELL---QEEATPEKLARALLPLLADGARRQALLEGFTELHQQL-RCGADERAAQAVLELL 375 (380)
T ss_pred eehHHHhcCC-Ccchhhc---CCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHh
Confidence 2233332 3344343 2567999999999999999977665554444444332 2344444444444433
No 40
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.64 E-value=5.6e-14 Score=136.13 Aligned_cols=138 Identities=14% Similarity=0.281 Sum_probs=98.8
Q ss_pred CCCcEEEEeccCccccCHHHHHHHHHHHHh--CCCCEEEEEcCCCCCcccccCchhHHHH--hcCCceeecccCcc-ccc
Q 044266 268 QQNSVIYVAFGSFTVFDKEQFQELASGLEL--TNRPFLWVVRPDITNDAIDAYPEGFQDR--VATRRQMVGWAPQQ-KVL 342 (462)
Q Consensus 268 ~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~pq~-~ll 342 (462)
+++++|++..|+.+. ...+..+++++.+ .+.+++++.+.+ ..+-+.+.+. ..+++.+.+|+++. .+|
T Consensus 200 ~~~~~ilv~~G~lg~--~k~~~~li~~~~~~~~~~~~vvv~G~~------~~l~~~l~~~~~~~~~v~~~G~~~~~~~~~ 271 (391)
T PRK13608 200 PDKQTILMSAGAFGV--SKGFDTMITDILAKSANAQVVMICGKS------KELKRSLTAKFKSNENVLILGYTKHMNEWM 271 (391)
T ss_pred CCCCEEEEECCCccc--chhHHHHHHHHHhcCCCceEEEEcCCC------HHHHHHHHHHhccCCCeEEEeccchHHHHH
Confidence 346688888898762 2344555555422 235666665543 1111222222 23578888999764 699
Q ss_pred CCCCcccceeccCchhhhhhhhcCCceecc-ccccchhhhHHhHhhhheeeEEeecCCCCccCHHHHHHHHHHHhcCHHH
Q 044266 343 THPSIACFLSHCGWNSTMEGVSNGVPFLCW-PYFADQFLNESYICDIWKVGLRFNKNKNGIITREEIMKKVDQVLEDENF 421 (462)
Q Consensus 343 ~~~~~~~~I~HgG~~sv~eal~~GvP~l~~-P~~~DQ~~na~~v~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ll~~~~~ 421 (462)
+.+|+ +|+.+|..|+.||+++|+|+|+. |.-+.|..|+..+++. |+|+... +.+++.++|.++++|++.
T Consensus 272 ~~aDl--~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~-G~g~~~~-------~~~~l~~~i~~ll~~~~~ 341 (391)
T PRK13608 272 ASSQL--MITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEEK-GFGKIAD-------TPEEAIKIVASLTNGNEQ 341 (391)
T ss_pred HhhhE--EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhC-CcEEEeC-------CHHHHHHHHHHHhcCHHH
Confidence 88888 99998888999999999999998 6666677899999994 9998762 789999999999998854
Q ss_pred HH
Q 044266 422 KA 423 (462)
Q Consensus 422 ~~ 423 (462)
++
T Consensus 342 ~~ 343 (391)
T PRK13608 342 LT 343 (391)
T ss_pred HH
Confidence 43
No 41
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.61 E-value=2.3e-13 Score=131.71 Aligned_cols=144 Identities=14% Similarity=0.152 Sum_probs=96.7
Q ss_pred CCCcEEEEeccCccccCHHH-HHHHHHHHH-----hCCCCEEEEEcCCCCCcccccCchhHHHH-hcCCceeecccCcc-
Q 044266 268 QQNSVIYVAFGSFTVFDKEQ-FQELASGLE-----LTNRPFLWVVRPDITNDAIDAYPEGFQDR-VATRRQMVGWAPQQ- 339 (462)
Q Consensus 268 ~~~~~v~vs~Gs~~~~~~~~-~~~~~~a~~-----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~pq~- 339 (462)
+++++|++..|+........ ++.+...+. ..+.++++.++.+ ..+-+.+.+. ...++++.+|+++.
T Consensus 204 ~~~~~il~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~------~~~~~~L~~~~~~~~v~~~G~~~~~~ 277 (382)
T PLN02605 204 EDLPAVLLMGGGEGMGPLEETARALGDSLYDKNLGKPIGQVVVICGRN------KKLQSKLESRDWKIPVKVRGFVTNME 277 (382)
T ss_pred CCCcEEEEECCCcccccHHHHHHHHHHhhccccccCCCceEEEEECCC------HHHHHHHHhhcccCCeEEEeccccHH
Confidence 44667777776654323222 222222220 1234566666644 1111122211 13468888999874
Q ss_pred cccCCCCcccceeccCchhhhhhhhcCCceeccccccchh-hhHHhHhhhheeeEEeecCCCCccCHHHHHHHHHHHhcC
Q 044266 340 KVLTHPSIACFLSHCGWNSTMEGVSNGVPFLCWPYFADQF-LNESYICDIWKVGLRFNKNKNGIITREEIMKKVDQVLED 418 (462)
Q Consensus 340 ~ll~~~~~~~~I~HgG~~sv~eal~~GvP~l~~P~~~DQ~-~na~~v~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ll~~ 418 (462)
++|+.+|+ +|+.+|.+|++||+++|+|+|+.+....|. .|+..+.+. |.|..+ -+++++.++|.+++.|
T Consensus 278 ~l~~aaDv--~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~~-g~g~~~-------~~~~~la~~i~~ll~~ 347 (382)
T PLN02605 278 EWMGACDC--IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVDN-GFGAFS-------ESPKEIARIVAEWFGD 347 (382)
T ss_pred HHHHhCCE--EEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHhC-Cceeec-------CCHHHHHHHHHHHHcC
Confidence 79988888 999999999999999999999998776775 699999884 999765 3889999999999988
Q ss_pred -HHHHHHHHH
Q 044266 419 -ENFKARALD 427 (462)
Q Consensus 419 -~~~~~~a~~ 427 (462)
++.+++.+.
T Consensus 348 ~~~~~~~m~~ 357 (382)
T PLN02605 348 KSDELEAMSE 357 (382)
T ss_pred CHHHHHHHHH
Confidence 654444333
No 42
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.54 E-value=2.5e-16 Score=133.73 Aligned_cols=139 Identities=15% Similarity=0.215 Sum_probs=97.0
Q ss_pred EEEEeccCccccCHH-HHHHHHHHHHh--CCCCEEEEEcCCCCCcccccCchhHHHHhcCCceeecccC-cccccCCCCc
Q 044266 272 VIYVAFGSFTVFDKE-QFQELASGLEL--TNRPFLWVVRPDITNDAIDAYPEGFQDRVATRRQMVGWAP-QQKVLTHPSI 347 (462)
Q Consensus 272 ~v~vs~Gs~~~~~~~-~~~~~~~a~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-q~~ll~~~~~ 347 (462)
+|+|+.||.....-. .+..+...+.. ...++++.++.. ........ .+....++.+.+|.+ ...+++.+|+
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~----~~~~~~~~-~~~~~~~v~~~~~~~~m~~~m~~aDl 75 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKN----NYEELKIK-VENFNPNVKVFGFVDNMAELMAAADL 75 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTC----ECHHHCCC-HCCTTCCCEEECSSSSHHHHHHHHSE
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCC----cHHHHHHH-HhccCCcEEEEechhhHHHHHHHcCE
Confidence 489999987543111 22233333322 246888888765 11111111 111126788999999 5689999888
Q ss_pred ccceeccCchhhhhhhhcCCceecccccc----chhhhHHhHhhhheeeEEeecCCCCccCHHHHHHHHHHHhcCHHH
Q 044266 348 ACFLSHCGWNSTMEGVSNGVPFLCWPYFA----DQFLNESYICDIWKVGLRFNKNKNGIITREEIMKKVDQVLEDENF 421 (462)
Q Consensus 348 ~~~I~HgG~~sv~eal~~GvP~l~~P~~~----DQ~~na~~v~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ll~~~~~ 421 (462)
+|||||.||++|++.+|+|+|++|... +|..||..+++. |.|..+.. ...+.+.|.++|.+++.++..
T Consensus 76 --vIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~-g~~~~~~~---~~~~~~~L~~~i~~l~~~~~~ 147 (167)
T PF04101_consen 76 --VISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKK-GAAIMLDE---SELNPEELAEAIEELLSDPEK 147 (167)
T ss_dssp --EEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHC-CCCCCSEC---CC-SCCCHHHHHHCHCCCHH-
T ss_pred --EEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHc-CCccccCc---ccCCHHHHHHHHHHHHcCcHH
Confidence 999999999999999999999999988 999999999994 99999974 567799999999999998865
No 43
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.53 E-value=3.2e-12 Score=123.27 Aligned_cols=332 Identities=13% Similarity=0.023 Sum_probs=182.9
Q ss_pred CCccChHHHHHHHHHHHh--CCCEEE---EEeCCcchHHHHHhhcCCCCCCCCeEEEEcCCCCCCCCC-CCCHHHHHHHH
Q 044266 13 PAQGHVIPLLEISQCLVK--HGVKVT---FLNTDYNHKRVVNALGQNNYIGDQIKLVSIPDGMEPEGD-RNDLGMLTKTM 86 (462)
Q Consensus 13 ~~~GH~~p~l~La~~L~~--rGh~Vt---~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~-~~~~~~~~~~~ 86 (462)
.++|-=.-.+++|++|.+ .|++|. ++++..-. ++.... . .| .+..+| .+.. ..++...+...
T Consensus 5 nghged~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~---e~~~ip---~-~g-~~~~~~----sgg~~~~~~~~~~~~~ 72 (396)
T TIGR03492 5 NGHGEDLIAARIAKALLQLSPDLNLEALPLVGEGRAY---QNLGIP---I-IG-PTKELP----SGGFSYQSLRGLLRDL 72 (396)
T ss_pred CCchHHHHHHHHHHHHHhhCCCCCeEEeCcccCCHHH---hhCCCc---e-eC-CCCCCC----CCCccCCCHHHHHHHH
Confidence 455555667899999998 699999 99887543 222000 0 12 333333 2222 23444444444
Q ss_pred HHhccHHHHHHHHHHhhccCC--CceEEEeCCCcchHHHHHHHcCCceEEEccchhHHHHHHHhHhhhhcCCCcCCCCCC
Q 044266 87 VRVMPEKLEELIENINRLENE--KITCVVADGSMGWVMEVAEKMKLRRAAFWPAAAGLLALSFSVQRFLDDGIVDDNGTP 164 (462)
Q Consensus 87 ~~~~~~~~~~l~~~l~~~~~~--~~Dlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 164 (462)
.+-.-..+.+-+..+++ . +||+||.-.-+. ++.+|...|+|++++.+.-... ... +..+.+
T Consensus 73 ~~gl~~~~~~~~~~~~~---~~~~p~~v~~~Gg~v-~~~aA~~~~~p~~~~~~~esn~----------~~~---~~~~~~ 135 (396)
T TIGR03492 73 RAGLVGLTLGQWRALRK---WAKKGDLIVAVGDIV-PLLFAWLSGKPYAFVGTAKSDY----------YWE---SGPRRS 135 (396)
T ss_pred HhhHHHHHHHHHHHHHH---HhhcCCEEEEECcHH-HHHHHHHcCCCceEEEeeccce----------eec---CCCCCc
Confidence 43111222222333333 5 999999887666 8888999999999965533210 000 000000
Q ss_pred ccccccccCCCCcccCcccchhhhhcCCCcchhhHHHHHHhhhhhccccEEEEcCccccchhhhccCCCccccCcccCCC
Q 044266 165 VKQQMIQLAPTMAAIHSSKLVWACIGDFNTQKIVFDFTIDNNETIKKAERLICNSTYDLEPGALDLIPEFLPIGPLLSSN 244 (462)
Q Consensus 165 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~p~v~~vGp~~~~~ 244 (462)
. .+....++|....++ + . +. -..+.++.+++.+...-+.- ....-++.++|.-..+.
T Consensus 136 ~-~~~~~~~~G~~~~p~-e-~-n~------------------l~~~~a~~v~~~~~~t~~~l-~~~g~k~~~vGnPv~d~ 192 (396)
T TIGR03492 136 P-SDEYHRLEGSLYLPW-E-R-WL------------------MRSRRCLAVFVRDRLTARDL-RRQGVRASYLGNPMMDG 192 (396)
T ss_pred c-chhhhccCCCccCHH-H-H-HH------------------hhchhhCEEeCCCHHHHHHH-HHCCCeEEEeCcCHHhc
Confidence 0 001112233221111 0 0 00 01245666666553332221 22224888999554433
Q ss_pred CCCCCCCCCCCCCchhhHhhccCCCCcEEEEeccCccccCHHHHHHHHHHHHhC----CCCEEEEEcCCCCCcccccCch
Q 044266 245 RLGNSAGYFWPEDSTCLKWLDQQQQNSVIYVAFGSFTVFDKEQFQELASGLELT----NRPFLWVVRPDITNDAIDAYPE 320 (462)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~----~~~~i~~~~~~~~~~~~~~~~~ 320 (462)
.... .. . -+ .++++++.+--||........+..++++++.. +..+++.+.++.+. +
T Consensus 193 l~~~------~~-~----~l--~~~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~~~-------~ 252 (396)
T TIGR03492 193 LEPP------ER-K----PL--LTGRFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPSLSL-------E 252 (396)
T ss_pred Cccc------cc-c----cc--CCCCCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCCCCH-------H
Confidence 2110 00 0 02 12356888989998544444455555555443 45677776443111 1
Q ss_pred hHHHHh-------------------cCCceeecccCc-ccccCCCCcccceeccCchhhhhhhhcCCceeccccccchhh
Q 044266 321 GFQDRV-------------------ATRRQMVGWAPQ-QKVLTHPSIACFLSHCGWNSTMEGVSNGVPFLCWPYFADQFL 380 (462)
Q Consensus 321 ~~~~~~-------------------~~~v~~~~~~pq-~~ll~~~~~~~~I~HgG~~sv~eal~~GvP~l~~P~~~DQ~~ 380 (462)
.+.+.. .+++.+..+..+ .++|+.+++ +|+-+|..| .|++..|+|+|++|.-..|.
T Consensus 253 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ADl--vI~rSGt~T-~E~a~lg~P~Ilip~~~~q~- 328 (396)
T TIGR03492 253 KLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWADL--GIAMAGTAT-EQAVGLGKPVIQLPGKGPQF- 328 (396)
T ss_pred HHHHHHHhcCceecCCccccchhhccCceEEEechHhHHHHHHhCCE--EEECcCHHH-HHHHHhCCCEEEEeCCCCHH-
Confidence 111111 122445455443 579988888 999999777 99999999999999766676
Q ss_pred hHHhHhhhh----eeeEEeecCCCCccCHHHHHHHHHHHhcCHHHHHHHH
Q 044266 381 NESYICDIW----KVGLRFNKNKNGIITREEIMKKVDQVLEDENFKARAL 426 (462)
Q Consensus 381 na~~v~~~~----g~g~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~ 426 (462)
|+...++ . |.++.+. ..+.+.|.+++.++++|++.+++..
T Consensus 329 na~~~~~-~~~l~g~~~~l~-----~~~~~~l~~~l~~ll~d~~~~~~~~ 372 (396)
T TIGR03492 329 TYGFAEA-QSRLLGGSVFLA-----SKNPEQAAQVVRQLLADPELLERCR 372 (396)
T ss_pred HHHHHHh-hHhhcCCEEecC-----CCCHHHHHHHHHHHHcCHHHHHHHH
Confidence 8876664 2 6666663 2456999999999999987665444
No 44
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.52 E-value=1.6e-11 Score=118.09 Aligned_cols=320 Identities=11% Similarity=0.046 Sum_probs=168.7
Q ss_pred ccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHhccHHH
Q 044266 15 QGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIPDGMEPEGDRNDLGMLTKTMVRVMPEKL 94 (462)
Q Consensus 15 ~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (462)
.|+...+..|+++|.++||+|++++.......-... ....+...+.. ..... . ... .....+
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--------~~~~~~~~~~~--~~~~~-~------~~~-~~~~~~ 75 (364)
T cd03814 14 NGVVRTLQRLVEHLRARGHEVLVIAPGPFRESEGPA--------RVVPVPSVPLP--GYPEI-R------LAL-PPRRRV 75 (364)
T ss_pred cceehHHHHHHHHHHHCCCEEEEEeCCchhhccCCC--------CceeecccccC--cccce-E------ecc-cchhhH
Confidence 689999999999999999999999987543211000 01111111100 00000 0 000 011123
Q ss_pred HHHHHHHhhccCCCceEEEeCCCcc---hHHHHHHHcCCceEEEccchhHHHHHHHhHhhhhcCCCcCCCCCCccccccc
Q 044266 95 EELIENINRLENEKITCVVADGSMG---WVMEVAEKMKLRRAAFWPAAAGLLALSFSVQRFLDDGIVDDNGTPVKQQMIQ 171 (462)
Q Consensus 95 ~~l~~~l~~~~~~~~Dlvi~D~~~~---~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 171 (462)
...++. .+||+|++..... .+..+++..++|++.............
T Consensus 76 ~~~~~~------~~pdii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~------------------------- 124 (364)
T cd03814 76 RRLLDA------FAPDVVHIATPGPLGLAALRAARRLGIPVVTSYHTDFPEYLRY------------------------- 124 (364)
T ss_pred HHHHHh------cCCCEEEEeccchhhHHHHHHHHHcCCCEEEEEecChHHHhhh-------------------------
Confidence 333333 8999998764333 456778889999987544321100000
Q ss_pred cCCCCcccCcccchhhhhcCCCcchhhHHHHHHhh-hhhccccEEEEcCccccchhhhccCCCccccCcccCCCCCCCCC
Q 044266 172 LAPTMAAIHSSKLVWACIGDFNTQKIVFDFTIDNN-ETIKKAERLICNSTYDLEPGALDLIPEFLPIGPLLSSNRLGNSA 250 (462)
Q Consensus 172 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~ns~~~le~~~~~~~p~v~~vGp~~~~~~~~~~~ 250 (462)
... .. ......... ...+.++.+++.+....+.-.....+++..+.+........ +
T Consensus 125 ~~~------------~~---------~~~~~~~~~~~~~~~~d~i~~~s~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~- 181 (364)
T cd03814 125 YGL------------GP---------LSWLAWAYLRWFHNRADRVLVPSPSLADELRARGFRRVRLWPRGVDTELFH-P- 181 (364)
T ss_pred ccc------------ch---------HhHhhHHHHHHHHHhCCEEEeCCHHHHHHHhccCCCceeecCCCccccccC-c-
Confidence 000 00 000000011 12356788888887665522111223444443322111110 0
Q ss_pred CCCCCCCchhhHhhccCCCCcEEEEeccCccc-cCHHHHHHHHHHHHhC-CCCEEEEEcCCCCCcccccCchhHHHHhcC
Q 044266 251 GYFWPEDSTCLKWLDQQQQNSVIYVAFGSFTV-FDKEQFQELASGLELT-NRPFLWVVRPDITNDAIDAYPEGFQDRVAT 328 (462)
Q Consensus 251 ~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~-~~~~~~~~~~~a~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (462)
.........-.. ..++.+++..|+... ...+.+..++..+... +.++++...+. . .+.+. ...+
T Consensus 182 ---~~~~~~~~~~~~--~~~~~~i~~~G~~~~~k~~~~~i~~~~~l~~~~~~~l~i~G~~~----~----~~~~~-~~~~ 247 (364)
T cd03814 182 ---RRRDEALRARLG--PPDRPVLLYVGRLAPEKNLEALLDADLPLRRRPPVRLVIVGDGP----A----RARLE-ARYP 247 (364)
T ss_pred ---ccccHHHHHHhC--CCCCeEEEEEeccccccCHHHHHHHHHHhhhcCCceEEEEeCCc----h----HHHHh-ccCC
Confidence 001111111111 223466677777642 2233333444444321 34444443222 1 11111 2357
Q ss_pred CceeecccCccc---ccCCCCcccceeccC----chhhhhhhhcCCceeccccccchhhhHHhHhhhheeeEEeecCCCC
Q 044266 329 RRQMVGWAPQQK---VLTHPSIACFLSHCG----WNSTMEGVSNGVPFLCWPYFADQFLNESYICDIWKVGLRFNKNKNG 401 (462)
Q Consensus 329 ~v~~~~~~pq~~---ll~~~~~~~~I~HgG----~~sv~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~g~~~~~~~~~ 401 (462)
|+.+.+|+++.+ +++.+++ +|+.++ .++++||+++|+|+|+.+..+ +...+++. +.|....
T Consensus 248 ~v~~~g~~~~~~~~~~~~~~d~--~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~----~~~~i~~~-~~g~~~~----- 315 (364)
T cd03814 248 NVHFLGFLDGEELAAAYASADV--FVFPSRTETFGLVVLEAMASGLPVVAPDAGG----PADIVTDG-ENGLLVE----- 315 (364)
T ss_pred cEEEEeccCHHHHHHHHHhCCE--EEECcccccCCcHHHHHHHcCCCEEEcCCCC----chhhhcCC-cceEEcC-----
Confidence 899999999764 8888887 887654 478999999999999887543 55566663 8888874
Q ss_pred ccCHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 044266 402 IITREEIMKKVDQVLEDENFKARALDLKETS 432 (462)
Q Consensus 402 ~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~~ 432 (462)
..+.+++.++|.+++.|++.+++..+-+.+.
T Consensus 316 ~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ 346 (364)
T cd03814 316 PGDAEAFAAALAALLADPELRRRMAARARAE 346 (364)
T ss_pred CCCHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 3578889999999999987665554444443
No 45
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.46 E-value=2.5e-13 Score=111.66 Aligned_cols=125 Identities=18% Similarity=0.129 Sum_probs=82.9
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcCCCCCCCCCCCCHHHHHHHH
Q 044266 7 VLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIPDGMEPEGDRNDLGMLTKTM 86 (462)
Q Consensus 7 Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~ 86 (462)
|+|++.|+.||++|+++||++|++|||+|++++++.+.+.+++. |++|..++.+. ...........+...
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~~---------Gl~~~~~~~~~-~~~~~~~~~~~~~~~ 70 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEAA---------GLEFVPIPGDS-RLPRSLEPLANLRRL 70 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHHT---------T-EEEESSSCG-GGGHHHHHHHHHHCH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceeccccc---------CceEEEecCCc-CcCcccchhhhhhhH
Confidence 78999999999999999999999999999999999999999877 99999988660 000000011111111
Q ss_pred HHh--ccHHHHHHHHHHhh------ccCCCceEEEeCCCcchHHHHHHHcCCceEEEccchhH
Q 044266 87 VRV--MPEKLEELIENINR------LENEKITCVVADGSMGWVMEVAEKMKLRRAAFWPAAAG 141 (462)
Q Consensus 87 ~~~--~~~~~~~l~~~l~~------~~~~~~Dlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~~ 141 (462)
.+. ....+.+.++.... ......|+++.+.....+..+|+++|||++.....+.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~~ 133 (139)
T PF03033_consen 71 ARLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPWF 133 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGGG
T ss_pred HHHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCcC
Confidence 111 01112222222111 11246888888888889999999999999998776653
No 46
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.42 E-value=4.3e-10 Score=111.90 Aligned_cols=134 Identities=16% Similarity=0.221 Sum_probs=85.3
Q ss_pred EEEEeccCccccCHHHHHHHHHHHHhC-CCCEEEEEcCCCCCcccccCchhHHHHh-cCCceeecccCcc---cccCCCC
Q 044266 272 VIYVAFGSFTVFDKEQFQELASGLELT-NRPFLWVVRPDITNDAIDAYPEGFQDRV-ATRRQMVGWAPQQ---KVLTHPS 346 (462)
Q Consensus 272 ~v~vs~Gs~~~~~~~~~~~~~~a~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~pq~---~ll~~~~ 346 (462)
.+++..|+.. ..+.+..++++++.. +.+++++ +.+ ...+.+.+.. ..++.+.+++++. .+|+.+|
T Consensus 264 ~~i~~vGrl~--~~K~~~~li~a~~~~~~~~l~iv-G~G-------~~~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~aD 333 (465)
T PLN02871 264 PLIVYVGRLG--AEKNLDFLKRVMERLPGARLAFV-GDG-------PYREELEKMFAGTPTVFTGMLQGDELSQAYASGD 333 (465)
T ss_pred eEEEEeCCCc--hhhhHHHHHHHHHhCCCcEEEEE-eCC-------hHHHHHHHHhccCCeEEeccCCHHHHHHHHHHCC
Confidence 4556668764 334466677777654 4455544 332 1112222221 3578889999864 4888888
Q ss_pred cccceeccC----chhhhhhhhcCCceeccccccchhhhHHhHhh---hheeeEEeecCCCCccCHHHHHHHHHHHhcCH
Q 044266 347 IACFLSHCG----WNSTMEGVSNGVPFLCWPYFADQFLNESYICD---IWKVGLRFNKNKNGIITREEIMKKVDQVLEDE 419 (462)
Q Consensus 347 ~~~~I~HgG----~~sv~eal~~GvP~l~~P~~~DQ~~na~~v~~---~~g~g~~~~~~~~~~~~~~~l~~~i~~ll~~~ 419 (462)
+ +|.-.. ..+++||+++|+|+|+....+ ....+++ . +.|..++. -+.+++.++|.++++|+
T Consensus 334 v--~V~pS~~E~~g~~vlEAmA~G~PVI~s~~gg----~~eiv~~~~~~-~~G~lv~~-----~d~~~la~~i~~ll~~~ 401 (465)
T PLN02871 334 V--FVMPSESETLGFVVLEAMASGVPVVAARAGG----IPDIIPPDQEG-KTGFLYTP-----GDVDDCVEKLETLLADP 401 (465)
T ss_pred E--EEECCcccccCcHHHHHHHcCCCEEEcCCCC----cHhhhhcCCCC-CceEEeCC-----CCHHHHHHHHHHHHhCH
Confidence 8 775433 347899999999999875432 2223333 3 67888743 47899999999999998
Q ss_pred HHHHHHHH
Q 044266 420 NFKARALD 427 (462)
Q Consensus 420 ~~~~~a~~ 427 (462)
+.+++..+
T Consensus 402 ~~~~~~~~ 409 (465)
T PLN02871 402 ELRERMGA 409 (465)
T ss_pred HHHHHHHH
Confidence 65544333
No 47
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.38 E-value=6e-10 Score=108.67 Aligned_cols=86 Identities=19% Similarity=0.232 Sum_probs=62.8
Q ss_pred cCCceeecccCccc---ccCCCCccccee---ccCc-hhhhhhhhcCCceeccccccchhhhHHhHhhhheeeEEeecCC
Q 044266 327 ATRRQMVGWAPQQK---VLTHPSIACFLS---HCGW-NSTMEGVSNGVPFLCWPYFADQFLNESYICDIWKVGLRFNKNK 399 (462)
Q Consensus 327 ~~~v~~~~~~pq~~---ll~~~~~~~~I~---HgG~-~sv~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~g~~~~~~~ 399 (462)
.++|.+.+++|+.+ +|..+++ +|. +.|. .+++||+++|+|+|+.. .......+... ..|..++
T Consensus 280 ~~~V~f~G~v~~~~~~~~l~~adv--~v~~s~~e~~~~~llEAmA~G~PVIas~----~~g~~e~i~~~-~~G~lv~--- 349 (396)
T cd03818 280 LSRVHFLGRVPYDQYLALLQVSDV--HVYLTYPFVLSWSLLEAMACGCLVVGSD----TAPVREVITDG-ENGLLVD--- 349 (396)
T ss_pred cceEEEeCCCCHHHHHHHHHhCcE--EEEcCcccccchHHHHHHHCCCCEEEcC----CCCchhhcccC-CceEEcC---
Confidence 36788999999764 6778887 553 2232 48999999999999863 34455555552 5677774
Q ss_pred CCccCHHHHHHHHHHHhcCHHHHHH
Q 044266 400 NGIITREEIMKKVDQVLEDENFKAR 424 (462)
Q Consensus 400 ~~~~~~~~l~~~i~~ll~~~~~~~~ 424 (462)
..++++++++|.++++|++.+++
T Consensus 350 --~~d~~~la~~i~~ll~~~~~~~~ 372 (396)
T cd03818 350 --FFDPDALAAAVIELLDDPARRAR 372 (396)
T ss_pred --CCCHHHHHHHHHHHHhCHHHHHH
Confidence 35799999999999999865443
No 48
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.37 E-value=5.5e-10 Score=107.04 Aligned_cols=88 Identities=17% Similarity=0.217 Sum_probs=65.1
Q ss_pred cCCceeecccCcc---cccCCCCcccceec----cC-chhhhhhhhcCCceeccccccchhhhHHhHhhhheeeEEeecC
Q 044266 327 ATRRQMVGWAPQQ---KVLTHPSIACFLSH----CG-WNSTMEGVSNGVPFLCWPYFADQFLNESYICDIWKVGLRFNKN 398 (462)
Q Consensus 327 ~~~v~~~~~~pq~---~ll~~~~~~~~I~H----gG-~~sv~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~g~~~~~~ 398 (462)
.+++.+.+++++. .++..+++ +|+. .| ..+++||+++|+|+|+.+. ..+...+.+. +.|..+..
T Consensus 242 ~~~v~~~g~~~~~~~~~~~~~ad~--~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~----~~~~e~i~~~-~~g~~~~~- 313 (359)
T cd03823 242 DPRVEFLGAYPQEEIDDFYAEIDV--LVVPSIWPENFPLVIREALAAGVPVIASDI----GGMAELVRDG-VNGLLFPP- 313 (359)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEEcCcccCCCChHHHHHHHCCCCEEECCC----CCHHHHhcCC-CcEEEECC-
Confidence 4788899999865 46888887 6632 33 3479999999999998754 3455566663 57887743
Q ss_pred CCCccCHHHHHHHHHHHhcCHHHHHHHH
Q 044266 399 KNGIITREEIMKKVDQVLEDENFKARAL 426 (462)
Q Consensus 399 ~~~~~~~~~l~~~i~~ll~~~~~~~~a~ 426 (462)
-+.+++.++|.++++|++.++...
T Consensus 314 ----~d~~~l~~~i~~l~~~~~~~~~~~ 337 (359)
T cd03823 314 ----GDAEDLAAALERLIDDPDLLERLR 337 (359)
T ss_pred ----CCHHHHHHHHHHHHhChHHHHHHH
Confidence 468999999999999886554443
No 49
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.36 E-value=8.7e-10 Score=107.91 Aligned_cols=77 Identities=18% Similarity=0.294 Sum_probs=55.9
Q ss_pred CCceee-cccCcc---cccCCCCccccee-c------cCchhhhhhhhcCCceeccccccchhhhHHhHhhhheeeEEee
Q 044266 328 TRRQMV-GWAPQQ---KVLTHPSIACFLS-H------CGWNSTMEGVSNGVPFLCWPYFADQFLNESYICDIWKVGLRFN 396 (462)
Q Consensus 328 ~~v~~~-~~~pq~---~ll~~~~~~~~I~-H------gG~~sv~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~g~~~~ 396 (462)
+++.+. +|+|.. .+|+.+|+ +|. + |--++++||+++|+|+|+... ......+++. +.|..+
T Consensus 294 ~~~~~~~g~~~~~~~~~~l~~aDv--~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~----~~~~eiv~~~-~~G~lv- 365 (415)
T cd03816 294 KKVTIRTPWLSAEDYPKLLASADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCALDF----KCIDELVKHG-ENGLVF- 365 (415)
T ss_pred CcEEEEcCcCCHHHHHHHHHhCCE--EEEccccccccCCcHHHHHHHHcCCCEEEeCC----CCHHHHhcCC-CCEEEE-
Confidence 355544 788865 46888888 663 1 124479999999999998643 3455566663 678877
Q ss_pred cCCCCccCHHHHHHHHHHHhcC
Q 044266 397 KNKNGIITREEIMKKVDQVLED 418 (462)
Q Consensus 397 ~~~~~~~~~~~l~~~i~~ll~~ 418 (462)
. +.++++++|.++++|
T Consensus 366 ----~--d~~~la~~i~~ll~~ 381 (415)
T cd03816 366 ----G--DSEELAEQLIDLLSN 381 (415)
T ss_pred ----C--CHHHHHHHHHHHHhc
Confidence 2 789999999999998
No 50
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.35 E-value=5.2e-10 Score=108.29 Aligned_cols=347 Identities=14% Similarity=0.060 Sum_probs=172.4
Q ss_pred EEEEEcCCC----ccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcCCCCCCCCCCCCHHH
Q 044266 6 HVLAFPYPA----QGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIPDGMEPEGDRNDLGM 81 (462)
Q Consensus 6 ~Il~~~~~~----~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~ 81 (462)
||++++... .|+-.....+++.|+++||+|++++....................++.+..++...... .....
T Consensus 1 kIl~i~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 77 (394)
T cd03794 1 KILILSQYFPPELGGGAFRTTELAEELVKRGHEVTVITGSPNYPSGKIYKGYKREEVDGVRVHRVPLPPYKK---NGLLK 77 (394)
T ss_pred CEEEEecccCCccCCcceeHHHHHHHHHhCCceEEEEecCCCcccccccccceEEecCCeEEEEEecCCCCc---cchHH
Confidence 466666432 48999999999999999999999997654332211000000011366666655332211 11111
Q ss_pred HHHHHHHhccHHHHHHHHHHhhccCCCceEEEeCCCcc----hHHHHHHHcCCceEEEccchhHHHHHHHhHhhhhcCCC
Q 044266 82 LTKTMVRVMPEKLEELIENINRLENEKITCVVADGSMG----WVMEVAEKMKLRRAAFWPAAAGLLALSFSVQRFLDDGI 157 (462)
Q Consensus 82 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~----~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~ 157 (462)
.+.............+.. +. .+||+|++..... .+..++...++|++............
T Consensus 78 ~~~~~~~~~~~~~~~~~~--~~---~~~D~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~------------ 140 (394)
T cd03794 78 RLLNYLSFALSALLALLK--RR---RRPDVIIATSPPLLIALAALLLARLKGAPFVLEVRDLWPESAV------------ 140 (394)
T ss_pred HHHhhhHHHHHHHHHHHh--cc---cCCCEEEEcCChHHHHHHHHHHHHhcCCCEEEEehhhcchhHH------------
Confidence 111111111111111211 23 8999999996222 33445666799998754422100000
Q ss_pred cCCCCCCccccccccCCCCcccCcccchhhhhcCCCcchhhHHHHHHh-hhhhccccEEEEcCccccchhh-hcc-CCCc
Q 044266 158 VDDNGTPVKQQMIQLAPTMAAIHSSKLVWACIGDFNTQKIVFDFTIDN-NETIKKAERLICNSTYDLEPGA-LDL-IPEF 234 (462)
Q Consensus 158 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~ns~~~le~~~-~~~-~p~v 234 (462)
...... . ........... ......++.+++.+....+.-. ... ..++
T Consensus 141 --------------~~~~~~-------------~---~~~~~~~~~~~~~~~~~~~d~vi~~s~~~~~~~~~~~~~~~~~ 190 (394)
T cd03794 141 --------------ALGLLK-------------N---GSLLYRLLRKLERLIYRRADAIVVISPGMREYLVRRGVPPEKI 190 (394)
T ss_pred --------------HccCcc-------------c---cchHHHHHHHHHHHHHhcCCEEEEECHHHHHHHHhcCCCcCce
Confidence 000000 0 00000111111 1124677888887766544321 011 1244
Q ss_pred cccCcccCCCCCCCCCCCCCCCCchhhHhhccCCCCcEEEEeccCccc-cCHHHHHHHHHHHHhC-CCCEEEEEcCCCCC
Q 044266 235 LPIGPLLSSNRLGNSAGYFWPEDSTCLKWLDQQQQNSVIYVAFGSFTV-FDKEQFQELASGLELT-NRPFLWVVRPDITN 312 (462)
Q Consensus 235 ~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~-~~~~~~~~~~~a~~~~-~~~~i~~~~~~~~~ 312 (462)
..+........... .......... ....++.+++..|+... ...+.+...+..+... +.++++ ++.+.
T Consensus 191 ~~i~~~~~~~~~~~-----~~~~~~~~~~--~~~~~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~~~~~l~i-~G~~~-- 260 (394)
T cd03794 191 SVIPNGVDLELFKP-----PPADESLRKE--LGLDDKFVVLYAGNIGRAQGLDTLLEAAALLKDRPDIRFLI-VGDGP-- 260 (394)
T ss_pred EEcCCCCCHHHcCC-----ccchhhhhhc--cCCCCcEEEEEecCcccccCHHHHHHHHHHHhhcCCeEEEE-eCCcc--
Confidence 44433222111100 0000000011 11234477777887643 2233333333333332 344443 33321
Q ss_pred cccccCchhHHH----HhcCCceeecccCcc---cccCCCCcccceeccC---------chhhhhhhhcCCceecccccc
Q 044266 313 DAIDAYPEGFQD----RVATRRQMVGWAPQQ---KVLTHPSIACFLSHCG---------WNSTMEGVSNGVPFLCWPYFA 376 (462)
Q Consensus 313 ~~~~~~~~~~~~----~~~~~v~~~~~~pq~---~ll~~~~~~~~I~HgG---------~~sv~eal~~GvP~l~~P~~~ 376 (462)
..+.+.+ ...+|+.+.+++++. +++..+++ +|.... -++++||+++|+|+|+.+..+
T Consensus 261 -----~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~ 333 (394)
T cd03794 261 -----EKEELKELAKALGLDNVTFLGRVPKEELPELLAAADV--GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGE 333 (394)
T ss_pred -----cHHHHHHHHHHcCCCcEEEeCCCChHHHHHHHHhhCe--eEEeccCcccccccCchHHHHHHHCCCcEEEecCCC
Confidence 1122221 224788889999865 47878877 664332 234799999999999987765
Q ss_pred chhhhHHhHhhhheeeEEeecCCCCccCHHHHHHHHHHHhcCHHHHHHHHHHH
Q 044266 377 DQFLNESYICDIWKVGLRFNKNKNGIITREEIMKKVDQVLEDENFKARALDLK 429 (462)
Q Consensus 377 DQ~~na~~v~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~ 429 (462)
.+. .+.+ .+.|..++. -+.++++++|.++++|++.+++..+-+
T Consensus 334 ~~~----~~~~-~~~g~~~~~-----~~~~~l~~~i~~~~~~~~~~~~~~~~~ 376 (394)
T cd03794 334 SAE----LVEE-AGAGLVVPP-----GDPEALAAAILELLDDPEERAEMGENG 376 (394)
T ss_pred chh----hhcc-CCcceEeCC-----CCHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 444 3344 267777742 488999999999998886655444333
No 51
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.31 E-value=2.8e-09 Score=102.10 Aligned_cols=312 Identities=15% Similarity=0.153 Sum_probs=166.3
Q ss_pred ccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHhccHHH
Q 044266 15 QGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIPDGMEPEGDRNDLGMLTKTMVRVMPEKL 94 (462)
Q Consensus 15 ~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (462)
.|+...+..+++.|.+.||+|++++............. ....... .. .......... ......+
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~~~-------~~~~~~~-----~~--~~~~~~~~~~--~~~~~~~ 77 (374)
T cd03801 14 GGAERHVLELARALAARGHEVTVLTPGDGGLPDEEEVG-------GIVVVRP-----PP--LLRVRRLLLL--LLLALRL 77 (374)
T ss_pred CcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceeeec-------CcceecC-----Cc--ccccchhHHH--HHHHHHH
Confidence 68899999999999999999999998765432221100 0000000 00 0000000000 1111223
Q ss_pred HHHHHHHhhccCCCceEEEeCCCcchHH--HHHHHcCCceEEEccchhHHHHHHHhHhhhhcCCCcCCCCCCcccccccc
Q 044266 95 EELIENINRLENEKITCVVADGSMGWVM--EVAEKMKLRRAAFWPAAAGLLALSFSVQRFLDDGIVDDNGTPVKQQMIQL 172 (462)
Q Consensus 95 ~~l~~~l~~~~~~~~Dlvi~D~~~~~~~--~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 172 (462)
..+++. .++|+|++........ ..+...++|++...........
T Consensus 78 ~~~~~~------~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~---------------------------- 123 (374)
T cd03801 78 RRLLRR------ERFDVVHAHDWLALLAAALAARLLGIPLVLTVHGLEFGRP---------------------------- 123 (374)
T ss_pred HHHhhh------cCCcEEEEechhHHHHHHHHHHhcCCcEEEEeccchhhcc----------------------------
Confidence 344444 8999999987666444 4788889999876543321000
Q ss_pred CCCCcccCcccchhhhhcCCCcchhhHHHHH-HhhhhhccccEEEEcCccccchhhhccC---CCccccCcccCCCCCCC
Q 044266 173 APTMAAIHSSKLVWACIGDFNTQKIVFDFTI-DNNETIKKAERLICNSTYDLEPGALDLI---PEFLPIGPLLSSNRLGN 248 (462)
Q Consensus 173 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~ns~~~le~~~~~~~---p~v~~vGp~~~~~~~~~ 248 (462)
.. . ......... ......+.++.+++.+....+.-..... .++..+..........
T Consensus 124 -~~-----------~-------~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~- 183 (374)
T cd03801 124 -GN-----------E-------LGLLLKLARALERRALRRADRIIAVSEATREELRELGGVPPEKITVIPNGVDTERFR- 183 (374)
T ss_pred -cc-----------c-------hhHHHHHHHHHHHHHHHhCCEEEEecHHHHHHHHhcCCCCCCcEEEecCcccccccC-
Confidence 00 0 000000111 1122346778888888765554311221 2455544322211110
Q ss_pred CCCCCCCCCchhhHhhccCCCCcEEEEeccCccccCHHHHHHHHHHHHhC-----CCCEEEEEcCCCCCcccccCchhHH
Q 044266 249 SAGYFWPEDSTCLKWLDQQQQNSVIYVAFGSFTVFDKEQFQELASGLELT-----NRPFLWVVRPDITNDAIDAYPEGFQ 323 (462)
Q Consensus 249 ~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~ 323 (462)
+....... ......+..+++.+|+.. ..+....+++++... +.++++ ++.+ . ....+.
T Consensus 184 ------~~~~~~~~-~~~~~~~~~~i~~~g~~~--~~k~~~~~i~~~~~~~~~~~~~~l~i-~G~~----~---~~~~~~ 246 (374)
T cd03801 184 ------PAPRAARR-RLGIPEDEPVILFVGRLV--PRKGVDLLLEALAKLRKEYPDVRLVI-VGDG----P---LREELE 246 (374)
T ss_pred ------ccchHHHh-hcCCcCCCeEEEEecchh--hhcCHHHHHHHHHHHhhhcCCeEEEE-EeCc----H---HHHHHH
Confidence 00000001 111122446677788764 222344444444322 233333 3322 1 111111
Q ss_pred H-----HhcCCceeecccCcc---cccCCCCccccee----ccCchhhhhhhhcCCceeccccccchhhhHHhHhhhhee
Q 044266 324 D-----RVATRRQMVGWAPQQ---KVLTHPSIACFLS----HCGWNSTMEGVSNGVPFLCWPYFADQFLNESYICDIWKV 391 (462)
Q Consensus 324 ~-----~~~~~v~~~~~~pq~---~ll~~~~~~~~I~----HgG~~sv~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~ 391 (462)
+ ...+++.+.+++++. .+|..+++ +|. -|..++++||+++|+|+|+.+. ......+++. +.
T Consensus 247 ~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~~~~-~~ 319 (374)
T cd03801 247 ALAAELGLGDRVTFLGFVPDEDLPALYAAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVVEDG-ET 319 (374)
T ss_pred HHHHHhCCCcceEEEeccChhhHHHHHHhcCE--EEecchhccccchHHHHHHcCCcEEEeCC----CChhHHhcCC-cc
Confidence 1 135788999999854 47888777 763 3557799999999999998765 4455566653 77
Q ss_pred eEEeecCCCCccCHHHHHHHHHHHhcCHHHHHHH
Q 044266 392 GLRFNKNKNGIITREEIMKKVDQVLEDENFKARA 425 (462)
Q Consensus 392 g~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a 425 (462)
|...+ ..+++++.++|.++++|++.++..
T Consensus 320 g~~~~-----~~~~~~l~~~i~~~~~~~~~~~~~ 348 (374)
T cd03801 320 GLLVP-----PGDPEALAEAILRLLDDPELRRRL 348 (374)
T ss_pred eEEeC-----CCCHHHHHHHHHHHHcChHHHHHH
Confidence 88774 356999999999999998654433
No 52
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.31 E-value=2.8e-09 Score=103.04 Aligned_cols=86 Identities=15% Similarity=0.162 Sum_probs=62.4
Q ss_pred cCCceeecccCc-ccccCCCCcccceec----cCchhhhhhhhcCCceeccccccchhhhHHhHhhhheeeEEeecCCCC
Q 044266 327 ATRRQMVGWAPQ-QKVLTHPSIACFLSH----CGWNSTMEGVSNGVPFLCWPYFADQFLNESYICDIWKVGLRFNKNKNG 401 (462)
Q Consensus 327 ~~~v~~~~~~pq-~~ll~~~~~~~~I~H----gG~~sv~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~g~~~~~~~~~ 401 (462)
.+++.+.++.++ ..+|..+++ +|.- |.-.+++||+++|+|+|+.. ....+..+++. ..|..++
T Consensus 252 ~~~v~~~g~~~~~~~~~~~~d~--~v~ps~~E~~~~~~~EAma~g~PvI~s~----~~~~~e~i~~~-~~G~~~~----- 319 (371)
T cd04962 252 QDDVLFLGKQDHVEELLSIADL--FLLPSEKESFGLAALEAMACGVPVVASN----AGGIPEVVKHG-ETGFLVD----- 319 (371)
T ss_pred CceEEEecCcccHHHHHHhcCE--EEeCCCcCCCccHHHHHHHcCCCEEEeC----CCCchhhhcCC-CceEEcC-----
Confidence 467888888775 368888777 6632 33569999999999999864 34455566653 5777664
Q ss_pred ccCHHHHHHHHHHHhcCHHHHHH
Q 044266 402 IITREEIMKKVDQVLEDENFKAR 424 (462)
Q Consensus 402 ~~~~~~l~~~i~~ll~~~~~~~~ 424 (462)
.-+.+++.++|.++++|++.+++
T Consensus 320 ~~~~~~l~~~i~~l~~~~~~~~~ 342 (371)
T cd04962 320 VGDVEAMAEYALSLLEDDELWQE 342 (371)
T ss_pred CCCHHHHHHHHHHHHhCHHHHHH
Confidence 25789999999999998865443
No 53
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.31 E-value=2.7e-09 Score=101.89 Aligned_cols=321 Identities=13% Similarity=0.073 Sum_probs=167.8
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHH-HHHhhcCCCCCCCCeEEEEcCCCCCCCCCCCCHHHHHH
Q 044266 6 HVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKR-VVNALGQNNYIGDQIKLVSIPDGMEPEGDRNDLGMLTK 84 (462)
Q Consensus 6 ~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~-v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~ 84 (462)
||++++....|+......++++|.+.||+|++++....... ... .++.++.++..... ......+.
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~----~~~~~~~~ 67 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDELEELEA---------LGVKVIPIPLDRRG----INPFKDLK 67 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCccccccc---------CCceEEeccccccc----cChHhHHH
Confidence 58888877889999999999999999999999998765542 222 26777776643211 11111111
Q ss_pred HHHHhccHHHHHHHHHHhhccCCCceEEEeCCCcc--hHHHHHHHcCCceEEEccchhHHHHHHHhHhhhhcCCCcCCCC
Q 044266 85 TMVRVMPEKLEELIENINRLENEKITCVVADGSMG--WVMEVAEKMKLRRAAFWPAAAGLLALSFSVQRFLDDGIVDDNG 162 (462)
Q Consensus 85 ~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 162 (462)
. +..+.+.++. .+||+|++..... .+..+++..+.|.+.+.........
T Consensus 68 ~--------~~~~~~~~~~---~~~dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------------------ 118 (359)
T cd03808 68 A--------LLRLYRLLRK---ERPDIVHTHTPKPGILGRLAARLAGVPKVIYTVHGLGFVF------------------ 118 (359)
T ss_pred H--------HHHHHHHHHh---cCCCEEEEccccchhHHHHHHHHcCCCCEEEEecCcchhh------------------
Confidence 1 1223333344 8999999886544 2334444356665554322211000
Q ss_pred CCccccccccCCCCcccCcccchhhhhcCCCcchhhHHHHHHhh-hhhccccEEEEcCccccchhhhccC---CCccccC
Q 044266 163 TPVKQQMIQLAPTMAAIHSSKLVWACIGDFNTQKIVFDFTIDNN-ETIKKAERLICNSTYDLEPGALDLI---PEFLPIG 238 (462)
Q Consensus 163 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~ns~~~le~~~~~~~---p~v~~vG 238 (462)
... .. ....+.... ...+.++.+++.+....+.-..... ...+.+.
T Consensus 119 ------------~~~---------~~---------~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~~~~~~ 168 (359)
T cd03808 119 ------------TSG---------GL---------KRRLYLLLERLALRFTDKVIFQNEDDRDLALKLGIIKKKKTVLIP 168 (359)
T ss_pred ------------ccc---------hh---------HHHHHHHHHHHHHhhccEEEEcCHHHHHHHHHhcCCCcCceEEec
Confidence 000 00 000011111 1234567888777655443211111 1222222
Q ss_pred cccCCCCCCCCCCCCCCCCchhhHhhccCCCCcEEEEeccCcccc-CHHHHHHHHHHHHhCC--CCEEEEEcCCCCCccc
Q 044266 239 PLLSSNRLGNSAGYFWPEDSTCLKWLDQQQQNSVIYVAFGSFTVF-DKEQFQELASGLELTN--RPFLWVVRPDITNDAI 315 (462)
Q Consensus 239 p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~-~~~~~~~~~~a~~~~~--~~~i~~~~~~~~~~~~ 315 (462)
|........ ...... ..+++.+++..|+.... ..+.+...+..+.+.+ .++++. +.....
T Consensus 169 ~~~~~~~~~------~~~~~~-------~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~-G~~~~~--- 231 (359)
T cd03808 169 GSGVDLDRF------SPSPEP-------IPEDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLV-GDGDEE--- 231 (359)
T ss_pred CCCCChhhc------Cccccc-------cCCCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEE-cCCCcc---
Confidence 222111100 000000 12345778888876432 2333333333443222 334333 332110
Q ss_pred ccCchhHHHH--hcCCceeecccCc-ccccCCCCcccceeccC----chhhhhhhhcCCceeccccccchhhhHHhHhhh
Q 044266 316 DAYPEGFQDR--VATRRQMVGWAPQ-QKVLTHPSIACFLSHCG----WNSTMEGVSNGVPFLCWPYFADQFLNESYICDI 388 (462)
Q Consensus 316 ~~~~~~~~~~--~~~~v~~~~~~pq-~~ll~~~~~~~~I~HgG----~~sv~eal~~GvP~l~~P~~~DQ~~na~~v~~~ 388 (462)
.......... ...++.+.++..+ ..++..+++ +|.-+. .++++||+.+|+|+|+-+.. .+...+++.
T Consensus 232 ~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi--~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~----~~~~~i~~~ 305 (359)
T cd03808 232 NPAAILEIEKLGLEGRVEFLGFRDDVPELLAAADV--FVLPSYREGLPRVLLEAMAMGRPVIATDVP----GCREAVIDG 305 (359)
T ss_pred hhhHHHHHHhcCCcceEEEeeccccHHHHHHhccE--EEecCcccCcchHHHHHHHcCCCEEEecCC----CchhhhhcC
Confidence 0000000111 2467778787554 368888887 775443 57899999999999986543 344555653
Q ss_pred heeeEEeecCCCCccCHHHHHHHHHHHhcCHHHHHHHHH
Q 044266 389 WKVGLRFNKNKNGIITREEIMKKVDQVLEDENFKARALD 427 (462)
Q Consensus 389 ~g~g~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~ 427 (462)
+.|..++ .-+.+++.++|.+++.|++.+++..+
T Consensus 306 -~~g~~~~-----~~~~~~~~~~i~~l~~~~~~~~~~~~ 338 (359)
T cd03808 306 -VNGFLVP-----PGDAEALADAIERLIEDPELRARMGQ 338 (359)
T ss_pred -cceEEEC-----CCCHHHHHHHHHHHHhCHHHHHHHHH
Confidence 6787774 35799999999999999865544333
No 54
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.31 E-value=2.1e-09 Score=104.90 Aligned_cols=329 Identities=13% Similarity=0.157 Sum_probs=166.2
Q ss_pred ccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHhccHHH
Q 044266 15 QGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIPDGMEPEGDRNDLGMLTKTMVRVMPEKL 94 (462)
Q Consensus 15 ~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (462)
.|.-..+..|++.|+++||+|++++........... ....++.++.++........... .+..+ ....
T Consensus 21 GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~---~~~~~----~~~~ 88 (398)
T cd03800 21 GGQNVYVLELARALARLGHEVDIFTRRIDDALPPIV-----ELAPGVRVVRVPAGPAEYLPKEE---LWPYL----DEFA 88 (398)
T ss_pred CceeehHHHHHHHHhccCceEEEEEecCCcccCCcc-----ccccceEEEecccccccCCChhh---cchhH----HHHH
Confidence 578889999999999999999999875432211100 11136777666532111100000 11111 1112
Q ss_pred HHHHHHHhhccCC--CceEEEeCCCcc--hHHHHHHHcCCceEEEccchhHHHHHHHhHhhhhcCCCcCCCCCCcccccc
Q 044266 95 EELIENINRLENE--KITCVVADGSMG--WVMEVAEKMKLRRAAFWPAAAGLLALSFSVQRFLDDGIVDDNGTPVKQQMI 170 (462)
Q Consensus 95 ~~l~~~l~~~~~~--~~Dlvi~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 170 (462)
..+++.++. . +||+|++..... .+..+++.+|+|++.........
T Consensus 89 ~~~~~~~~~---~~~~~Div~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~---------------------------- 137 (398)
T cd03800 89 DDLLRFLRR---EGGRPDLIHAHYWDSGLVALLLARRLGIPLVHTFHSLGAV---------------------------- 137 (398)
T ss_pred HHHHHHHHh---cCCCccEEEEecCccchHHHHHHhhcCCceEEEeeccccc----------------------------
Confidence 233333333 4 999999875333 45677888999988643321100
Q ss_pred ccCCCCcccCcccchhhhhcCCCcchhhHHHHHHhhhhhccccEEEEcCccccchhhhcc---CCCccccCcccCCCCCC
Q 044266 171 QLAPTMAAIHSSKLVWACIGDFNTQKIVFDFTIDNNETIKKAERLICNSTYDLEPGALDL---IPEFLPIGPLLSSNRLG 247 (462)
Q Consensus 171 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~---~p~v~~vGp~~~~~~~~ 247 (462)
....... .+. . . ............+.++.+++.+....+.-.... ..++..+.+-.......
T Consensus 138 -~~~~~~~------~~~-~-~------~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~~~vi~ng~~~~~~~ 202 (398)
T cd03800 138 -KRRHLGA------ADT-Y-E------PARRIEAEERLLRAADRVIASTPQEAEELYSLYGAYPRRIRVVPPGVDLERFT 202 (398)
T ss_pred -CCccccc------ccc-c-c------hhhhhhHHHHHHhhCCEEEEcCHHHHHHHHHHccccccccEEECCCCCcccee
Confidence 0000000 000 0 0 000000011234677888887765433221111 12244443322111100
Q ss_pred CCCCCCCCCCchhhHhhccCCCCcEEEEeccCccccCHHHHHHHHHHHHhC-----CCCEEEEEcCCCCCcccccCch--
Q 044266 248 NSAGYFWPEDSTCLKWLDQQQQNSVIYVAFGSFTVFDKEQFQELASGLELT-----NRPFLWVVRPDITNDAIDAYPE-- 320 (462)
Q Consensus 248 ~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~-----~~~~i~~~~~~~~~~~~~~~~~-- 320 (462)
. ............... +..+++..|+... ......+++++... +.++++..+..... ......
T Consensus 203 ~-----~~~~~~~~~~~~~~~-~~~~i~~~gr~~~--~k~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~--~~~~~~~~ 272 (398)
T cd03800 203 P-----YGRAEARRARLLRDP-DKPRILAVGRLDP--RKGIDTLIRAYAELPELRERANLVIVGGPRDDI--LAMDEEEL 272 (398)
T ss_pred c-----ccchhhHHHhhccCC-CCcEEEEEccccc--ccCHHHHHHHHHHHHHhCCCeEEEEEECCCCcc--hhhhhHHH
Confidence 0 000000011111122 3366777787642 22233444444322 34555554432110 000000
Q ss_pred -hHHHH--hcCCceeecccCccc---ccCCCCcccceec----cCchhhhhhhhcCCceeccccccchhhhHHhHhhhhe
Q 044266 321 -GFQDR--VATRRQMVGWAPQQK---VLTHPSIACFLSH----CGWNSTMEGVSNGVPFLCWPYFADQFLNESYICDIWK 390 (462)
Q Consensus 321 -~~~~~--~~~~v~~~~~~pq~~---ll~~~~~~~~I~H----gG~~sv~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g 390 (462)
.+.+. ..+|+.+.+|+|+.+ ++..+++ +++. |-..+++||+++|+|+|+.+.. .....+++. +
T Consensus 273 ~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~----~~~e~i~~~-~ 345 (398)
T cd03800 273 RELARELGVIDRVDFPGRVSREDLPALYRAADV--FVNPALYEPFGLTALEAMACGLPVVATAVG----GPRDIVVDG-V 345 (398)
T ss_pred HHHHHhcCCCceEEEeccCCHHHHHHHHHhCCE--EEecccccccCcHHHHHHhcCCCEEECCCC----CHHHHccCC-C
Confidence 11111 246788999999764 6888777 7754 2246899999999999987543 355566663 7
Q ss_pred eeEEeecCCCCccCHHHHHHHHHHHhcCHHHHH
Q 044266 391 VGLRFNKNKNGIITREEIMKKVDQVLEDENFKA 423 (462)
Q Consensus 391 ~g~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~ 423 (462)
.|..++. -+.+++.++|.++++|++.++
T Consensus 346 ~g~~~~~-----~~~~~l~~~i~~l~~~~~~~~ 373 (398)
T cd03800 346 TGLLVDP-----RDPEALAAALRRLLTDPALRR 373 (398)
T ss_pred CeEEeCC-----CCHHHHHHHHHHHHhCHHHHH
Confidence 8888743 479999999999999876543
No 55
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.30 E-value=2.3e-10 Score=99.43 Aligned_cols=296 Identities=17% Similarity=0.140 Sum_probs=180.9
Q ss_pred CEEEEEcCC----CccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcCCCCCCCCCCCCHH
Q 044266 5 PHVLAFPYP----AQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIPDGMEPEGDRNDLG 80 (462)
Q Consensus 5 ~~Il~~~~~----~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~ 80 (462)
|||+|++-+ +.||+...+.||++|.++|..++|++.+...+.+-+.. .++.+.....
T Consensus 1 M~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~~~~~~fl~k~~~e~~~~~~~-------~~f~~~~~~~------------ 61 (318)
T COG3980 1 MKVLIRCDGGLEIGMGHVMRTLTLARELEKRGFACLFLTKQDIEAIIHKVY-------EGFKVLEGRG------------ 61 (318)
T ss_pred CcEEEEecCCcccCcchhhhHHHHHHHHHhcCceEEEecccchhhhhhhhh-------hhccceeeec------------
Confidence 488888866 56999999999999999999999999987665333221 1222221110
Q ss_pred HHHHHHHHhccHHHHHHHHHHhhccCCCceEEEeCCCcc---hHHHHHHHcCCceEEEccchhHHHHHHHhHhhhhcCCC
Q 044266 81 MLTKTMVRVMPEKLEELIENINRLENEKITCVVADGSMG---WVMEVAEKMKLRRAAFWPAAAGLLALSFSVQRFLDDGI 157 (462)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~---~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~ 157 (462)
...+.+ .++|++|+|.+.. ....+..+.+.+.+.|-......+...
T Consensus 62 --------------~n~ik~------~k~d~lI~Dsygl~~dd~k~ik~e~~~k~l~fDd~~~~~~~d~----------- 110 (318)
T COG3980 62 --------------NNLIKE------EKFDLLIFDSYGLNADDFKLIKEEAGSKILIFDDENAKSFKDN----------- 110 (318)
T ss_pred --------------cccccc------ccCCEEEEeccCCCHHHHHHHHHHhCCcEEEecCCCccchhhh-----------
Confidence 013333 9999999998777 345667788999998765443211100
Q ss_pred cCCCCCCccccccccCCCCcccCcccchhhhhcCCCcchhhHHHHHHhhhhhccccEEEEcCccccchhhhccCCCcccc
Q 044266 158 VDDNGTPVKQQMIQLAPTMAAIHSSKLVWACIGDFNTQKIVFDFTIDNNETIKKAERLICNSTYDLEPGALDLIPEFLPI 237 (462)
Q Consensus 158 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~p~v~~v 237 (462)
++.-..... + +....+.+ ...-++.
T Consensus 111 -------------------------d~ivN~~~~--------------------a-----~~~y~~v~-----~k~~~~l 135 (318)
T COG3980 111 -------------------------DLIVNAILN--------------------A-----NDYYGLVP-----NKTRYYL 135 (318)
T ss_pred -------------------------Hhhhhhhhc--------------------c-----hhhccccC-----cceEEEe
Confidence 000000000 0 00000000 0011233
Q ss_pred CcccCCCCCCCCCCCCCCCCchhhHhhccCCCCcEEEEeccCccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCccccc
Q 044266 238 GPLLSSNRLGNSAGYFWPEDSTCLKWLDQQQQNSVIYVAFGSFTVFDKEQFQELASGLELTNRPFLWVVRPDITNDAIDA 317 (462)
Q Consensus 238 Gp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~ 317 (462)
||-....... +....+ .-+.+ +..-|+|++|. ..+....-+++..+.+....+-++++.. .+
T Consensus 136 Gp~y~~lr~e-----F~~~r~---~~~~r--~~r~ilI~lGG--sDpk~lt~kvl~~L~~~~~nl~iV~gs~------~p 197 (318)
T COG3980 136 GPGYAPLRPE-----FYALRE---ENTER--PKRDILITLGG--SDPKNLTLKVLAELEQKNVNLHIVVGSS------NP 197 (318)
T ss_pred cCCceeccHH-----HHHhHH---HHhhc--chheEEEEccC--CChhhhHHHHHHHhhccCeeEEEEecCC------Cc
Confidence 3322111000 000000 00111 24479999984 3344466678888877775555566533 23
Q ss_pred CchhHHHHh--cCCceeecccC-cccccCCCCcccceeccCchhhhhhhhcCCceeccccccchhhhHHhHhhhheeeEE
Q 044266 318 YPEGFQDRV--ATRRQMVGWAP-QQKVLTHPSIACFLSHCGWNSTMEGVSNGVPFLCWPYFADQFLNESYICDIWKVGLR 394 (462)
Q Consensus 318 ~~~~~~~~~--~~~v~~~~~~p-q~~ll~~~~~~~~I~HgG~~sv~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~g~~ 394 (462)
...++.++. .+|+.+.-... -..+|..+++ .|+.||. |+.|++.-|+|.+++|+..-|-.-|...+. +|+-..
T Consensus 198 ~l~~l~k~~~~~~~i~~~~~~~dma~LMke~d~--aI~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~-lg~~~~ 273 (318)
T COG3980 198 TLKNLRKRAEKYPNINLYIDTNDMAELMKEADL--AISAAGS-TLYEALLLGVPSLVLPLAENQIATAKEFEA-LGIIKQ 273 (318)
T ss_pred chhHHHHHHhhCCCeeeEecchhHHHHHHhcch--heeccch-HHHHHHHhcCCceEEeeeccHHHHHHHHHh-cCchhh
Confidence 344555443 35666654444 3469988887 9998875 899999999999999999999999999998 688888
Q ss_pred eecCCCCccCHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 044266 395 FNKNKNGIITREEIMKKVDQVLEDENFKARALDLKET 431 (462)
Q Consensus 395 ~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~ 431 (462)
+. -.++......-+.++..|...|.+.-.-++.
T Consensus 274 l~----~~l~~~~~~~~~~~i~~d~~~rk~l~~~~~~ 306 (318)
T COG3980 274 LG----YHLKDLAKDYEILQIQKDYARRKNLSFGSKL 306 (318)
T ss_pred cc----CCCchHHHHHHHHHhhhCHHHhhhhhhccce
Confidence 85 3478888888889999888877766544443
No 56
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.29 E-value=3.2e-09 Score=102.15 Aligned_cols=83 Identities=16% Similarity=0.260 Sum_probs=61.9
Q ss_pred cCCceeecccCccc---ccCCCCcccceec----cCchhhhhhhhcCCceeccccccchhhhHHhHhhhheeeEEeecCC
Q 044266 327 ATRRQMVGWAPQQK---VLTHPSIACFLSH----CGWNSTMEGVSNGVPFLCWPYFADQFLNESYICDIWKVGLRFNKNK 399 (462)
Q Consensus 327 ~~~v~~~~~~pq~~---ll~~~~~~~~I~H----gG~~sv~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~g~~~~~~~ 399 (462)
.+++.+.+++|+.+ ++..+++ +|.. |+..+++||+++|+|+|+... ...+..+++. +.|..++.
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~----~~~~~~i~~~-~~g~~~~~-- 328 (374)
T cd03817 258 ADRVIFTGFVPREELPDYYKAADL--FVFASTTETQGLVLLEAMAAGLPVVAVDA----PGLPDLVADG-ENGFLFPP-- 328 (374)
T ss_pred CCcEEEeccCChHHHHHHHHHcCE--EEecccccCcChHHHHHHHcCCcEEEeCC----CChhhheecC-ceeEEeCC--
Confidence 47888999999764 7888887 6643 334789999999999998653 4455566663 77888753
Q ss_pred CCccCHHHHHHHHHHHhcCHHHH
Q 044266 400 NGIITREEIMKKVDQVLEDENFK 422 (462)
Q Consensus 400 ~~~~~~~~l~~~i~~ll~~~~~~ 422 (462)
.+. ++.++|.++++|++.+
T Consensus 329 ---~~~-~~~~~i~~l~~~~~~~ 347 (374)
T cd03817 329 ---GDE-ALAEALLRLLQDPELR 347 (374)
T ss_pred ---CCH-HHHHHHHHHHhChHHH
Confidence 222 9999999999988643
No 57
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.25 E-value=4.5e-09 Score=103.48 Aligned_cols=83 Identities=14% Similarity=0.101 Sum_probs=61.6
Q ss_pred cccCCCCcccceec-----cCchhhhhhhhcCCceeccccccchhhhHHhHhhhheeeEEeecCCCCccCHHHHHHHHHH
Q 044266 340 KVLTHPSIACFLSH-----CGWNSTMEGVSNGVPFLCWPYFADQFLNESYICDIWKVGLRFNKNKNGIITREEIMKKVDQ 414 (462)
Q Consensus 340 ~ll~~~~~~~~I~H-----gG~~sv~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ 414 (462)
.+++.+|+ ++.. ||..+++||+++|+|+|+-|...++......+.+. |.++.. -+++++.++|.+
T Consensus 315 ~~y~~aDi--~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~-g~~~~~-------~d~~~La~~l~~ 384 (425)
T PRK05749 315 LLYAIADI--AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQA-GAAIQV-------EDAEDLAKAVTY 384 (425)
T ss_pred HHHHhCCE--EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHHC-CCeEEE-------CCHHHHHHHHHH
Confidence 57777776 4431 34446999999999999999988888877777663 776665 378999999999
Q ss_pred HhcCHHHHHHHHHHHHHH
Q 044266 415 VLEDENFKARALDLKETS 432 (462)
Q Consensus 415 ll~~~~~~~~a~~l~~~~ 432 (462)
+++|++.+++..+-+.+.
T Consensus 385 ll~~~~~~~~m~~~a~~~ 402 (425)
T PRK05749 385 LLTDPDARQAYGEAGVAF 402 (425)
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 999987665544443333
No 58
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.23 E-value=1.1e-09 Score=105.55 Aligned_cols=137 Identities=12% Similarity=0.156 Sum_probs=85.9
Q ss_pred CcEEEEeccCccccCHHHHHHHHHHHHhC-----CCCEEEEEcCCCCCcccccCchhHHHHh--cCCceeecccCcc---
Q 044266 270 NSVIYVAFGSFTVFDKEQFQELASGLELT-----NRPFLWVVRPDITNDAIDAYPEGFQDRV--ATRRQMVGWAPQQ--- 339 (462)
Q Consensus 270 ~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~pq~--- 339 (462)
++.++++.+-..... +.+..+++++.+. +.++++...++.+ ....+.+.. .+++++.+.+++.
T Consensus 197 ~~~vl~~~hr~~~~~-k~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~ 269 (365)
T TIGR00236 197 KRYILLTLHRRENVG-EPLENIFKAIREIVEEFEDVQIVYPVHLNPV------VREPLHKHLGDSKRVHLIEPLEYLDFL 269 (365)
T ss_pred CCEEEEecCchhhhh-hHHHHHHHHHHHHHHHCCCCEEEEECCCChH------HHHHHHHHhCCCCCEEEECCCChHHHH
Confidence 346766655322111 3466677766443 3455655443310 111122222 3578888777654
Q ss_pred cccCCCCcccceeccCchhhhhhhhcCCceeccccccchhhhHHhHhhhheeeEEeecCCCCccCHHHHHHHHHHHhcCH
Q 044266 340 KVLTHPSIACFLSHCGWNSTMEGVSNGVPFLCWPYFADQFLNESYICDIWKVGLRFNKNKNGIITREEIMKKVDQVLEDE 419 (462)
Q Consensus 340 ~ll~~~~~~~~I~HgG~~sv~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ll~~~ 419 (462)
.+++++++ +|+-.|.. +.||+++|+|+|..+..++++. +.+. |.+..+. .++++|.+++.++++|+
T Consensus 270 ~~l~~ad~--vv~~Sg~~-~~EA~a~g~PvI~~~~~~~~~e----~~~~-g~~~lv~------~d~~~i~~ai~~ll~~~ 335 (365)
T TIGR00236 270 NLAANSHL--ILTDSGGV-QEEAPSLGKPVLVLRDTTERPE----TVEA-GTNKLVG------TDKENITKAAKRLLTDP 335 (365)
T ss_pred HHHHhCCE--EEECChhH-HHHHHHcCCCEEECCCCCCChH----HHhc-CceEEeC------CCHHHHHHHHHHHHhCh
Confidence 56777776 99987654 7999999999999976665552 2332 7776553 37899999999999998
Q ss_pred HHHHHHHH
Q 044266 420 NFKARALD 427 (462)
Q Consensus 420 ~~~~~a~~ 427 (462)
+.+++...
T Consensus 336 ~~~~~~~~ 343 (365)
T TIGR00236 336 DEYKKMSN 343 (365)
T ss_pred HHHHHhhh
Confidence 77765543
No 59
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.23 E-value=2.1e-08 Score=98.39 Aligned_cols=135 Identities=7% Similarity=0.093 Sum_probs=80.2
Q ss_pred CcEEEEeccCccccCHHHHHHHHHHHHhC----CCCEEEEEcCCCCCcccccCchhHHHH---h-cCCceeecccCcc--
Q 044266 270 NSVIYVAFGSFTVFDKEQFQELASGLELT----NRPFLWVVRPDITNDAIDAYPEGFQDR---V-ATRRQMVGWAPQQ-- 339 (462)
Q Consensus 270 ~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~----~~~~i~~~~~~~~~~~~~~~~~~~~~~---~-~~~v~~~~~~pq~-- 339 (462)
+..+++..|+.. ..+.+..++++++.. +.+++ .++.+. ..+.+.+. . -+|+.+.+|+|+.
T Consensus 228 ~~~~i~~~G~l~--~~kg~~~li~a~~~l~~~~~~~l~-ivG~g~-------~~~~l~~~~~~~~l~~v~f~G~~~~~~~ 297 (412)
T PRK10307 228 GKKIVLYSGNIG--EKQGLELVIDAARRLRDRPDLIFV-ICGQGG-------GKARLEKMAQCRGLPNVHFLPLQPYDRL 297 (412)
T ss_pred CCEEEEEcCccc--cccCHHHHHHHHHHhccCCCeEEE-EECCCh-------hHHHHHHHHHHcCCCceEEeCCCCHHHH
Confidence 346667778764 333455566665433 23333 344331 11222211 1 2478899999875
Q ss_pred -cccCCCCcccceeccCc------hhhhhhhhcCCceeccccccchhhhHHhHhhhheeeEEeecCCCCccCHHHHHHHH
Q 044266 340 -KVLTHPSIACFLSHCGW------NSTMEGVSNGVPFLCWPYFADQFLNESYICDIWKVGLRFNKNKNGIITREEIMKKV 412 (462)
Q Consensus 340 -~ll~~~~~~~~I~HgG~------~sv~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~g~~~~~~~~~~~~~~~l~~~i 412 (462)
.+++.+|+-++.+..+. +.+.|++.+|+|+|+....+.. ....++ +.|..++ .-+.++++++|
T Consensus 298 ~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~--~~~~i~---~~G~~~~-----~~d~~~la~~i 367 (412)
T PRK10307 298 PALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTE--LGQLVE---GIGVCVE-----PESVEALVAAI 367 (412)
T ss_pred HHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCch--HHHHHh---CCcEEeC-----CCCHHHHHHHH
Confidence 47888888444444332 2368999999999998643311 111222 5677764 25789999999
Q ss_pred HHHhcCHHHHHH
Q 044266 413 DQVLEDENFKAR 424 (462)
Q Consensus 413 ~~ll~~~~~~~~ 424 (462)
.++++|++.+++
T Consensus 368 ~~l~~~~~~~~~ 379 (412)
T PRK10307 368 AALARQALLRPK 379 (412)
T ss_pred HHHHhCHHHHHH
Confidence 999998854433
No 60
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=99.21 E-value=2e-08 Score=98.30 Aligned_cols=90 Identities=16% Similarity=0.117 Sum_probs=65.0
Q ss_pred cCCceeecccCcc---cccCCCCccccee---ccC-chhhhhhhhcCCceeccccccchhhhHHhHhhhheeeEEeecCC
Q 044266 327 ATRRQMVGWAPQQ---KVLTHPSIACFLS---HCG-WNSTMEGVSNGVPFLCWPYFADQFLNESYICDIWKVGLRFNKNK 399 (462)
Q Consensus 327 ~~~v~~~~~~pq~---~ll~~~~~~~~I~---HgG-~~sv~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~g~~~~~~~ 399 (462)
.+++.+.+++|+. .+|+.+++ +|. +.| ..+++||+++|+|+|+.... .....+.+. +.|..++
T Consensus 282 ~~~v~~~g~~~~~~~~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~----~~~e~i~~~-~~g~~~~--- 351 (405)
T TIGR03449 282 ADRVRFLPPRPPEELVHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAARVG----GLPVAVADG-ETGLLVD--- 351 (405)
T ss_pred CceEEECCCCCHHHHHHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEecCC----CcHhhhccC-CceEECC---
Confidence 3679999999864 57888887 663 233 45899999999999987543 344455553 6777774
Q ss_pred CCccCHHHHHHHHHHHhcCHHHHHHHHHH
Q 044266 400 NGIITREEIMKKVDQVLEDENFKARALDL 428 (462)
Q Consensus 400 ~~~~~~~~l~~~i~~ll~~~~~~~~a~~l 428 (462)
.-+.++++++|.++++|++.+++...-
T Consensus 352 --~~d~~~la~~i~~~l~~~~~~~~~~~~ 378 (405)
T TIGR03449 352 --GHDPADWADALARLLDDPRTRIRMGAA 378 (405)
T ss_pred --CCCHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 258899999999999988655444333
No 61
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.21 E-value=7.6e-09 Score=99.64 Aligned_cols=85 Identities=12% Similarity=0.144 Sum_probs=61.4
Q ss_pred hcCCceeecccC-cc---cccCCCCcccceecc----CchhhhhhhhcCCceeccccccchhhhHHhHhhhheeeEEeec
Q 044266 326 VATRRQMVGWAP-QQ---KVLTHPSIACFLSHC----GWNSTMEGVSNGVPFLCWPYFADQFLNESYICDIWKVGLRFNK 397 (462)
Q Consensus 326 ~~~~v~~~~~~p-q~---~ll~~~~~~~~I~Hg----G~~sv~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~g~~~~~ 397 (462)
...++.+.+|++ +. .+++.+++ +|.-. ..++++||+.+|+|+|+.... .....+.+. +.|..++
T Consensus 242 ~~~~v~~~g~~~~~~~~~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~----~~~e~~~~~-~~g~~~~- 313 (365)
T cd03825 242 LPFPVHYLGSLNDDESLALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDVG----GIPDIVDHG-VTGYLAK- 313 (365)
T ss_pred CCCceEecCCcCCHHHHHHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecCC----CChhheeCC-CceEEeC-
Confidence 356788889998 43 47888777 77753 357999999999999986432 233344442 5677663
Q ss_pred CCCCccCHHHHHHHHHHHhcCHHHH
Q 044266 398 NKNGIITREEIMKKVDQVLEDENFK 422 (462)
Q Consensus 398 ~~~~~~~~~~l~~~i~~ll~~~~~~ 422 (462)
..+.+++.+++.++++|++.+
T Consensus 314 ----~~~~~~~~~~l~~l~~~~~~~ 334 (365)
T cd03825 314 ----PGDPEDLAEGIEWLLADPDER 334 (365)
T ss_pred ----CCCHHHHHHHHHHHHhCHHHH
Confidence 357899999999999988643
No 62
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=99.21 E-value=1.1e-08 Score=99.77 Aligned_cols=85 Identities=14% Similarity=0.110 Sum_probs=61.2
Q ss_pred cCCceeecccCcc---cccCCCCcccceecc---C-chhhhhhhhcCCceeccccccchhhhHHhHhhhheeeEEeecCC
Q 044266 327 ATRRQMVGWAPQQ---KVLTHPSIACFLSHC---G-WNSTMEGVSNGVPFLCWPYFADQFLNESYICDIWKVGLRFNKNK 399 (462)
Q Consensus 327 ~~~v~~~~~~pq~---~ll~~~~~~~~I~Hg---G-~~sv~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~g~~~~~~~ 399 (462)
.++|.+.+++|+. .+|..+++ ++... | ..+++||+.+|+|+|+.-.. .....+... +.|...+
T Consensus 279 ~~~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~~----~~~e~i~~~-~~g~~~~--- 348 (392)
T cd03805 279 EDQVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNSG----GPLETVVDG-ETGFLCE--- 348 (392)
T ss_pred CceEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECCC----CcHHHhccC-CceEEeC---
Confidence 4689999999976 47888887 66422 2 35789999999999987433 233445552 5676663
Q ss_pred CCccCHHHHHHHHHHHhcCHHHHHH
Q 044266 400 NGIITREEIMKKVDQVLEDENFKAR 424 (462)
Q Consensus 400 ~~~~~~~~l~~~i~~ll~~~~~~~~ 424 (462)
.+.++++++|.++++|++.+++
T Consensus 349 ---~~~~~~a~~i~~l~~~~~~~~~ 370 (392)
T cd03805 349 ---PTPEEFAEAMLKLANDPDLADR 370 (392)
T ss_pred ---CCHHHHHHHHHHHHhChHHHHH
Confidence 2789999999999998864433
No 63
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.17 E-value=3.4e-08 Score=94.84 Aligned_cols=83 Identities=17% Similarity=0.163 Sum_probs=63.1
Q ss_pred cCCceeecccCcc---cccCCCCcccce----eccCchhhhhhhhcCCceeccccccchhhhHHhHhhhheeeEEeecCC
Q 044266 327 ATRRQMVGWAPQQ---KVLTHPSIACFL----SHCGWNSTMEGVSNGVPFLCWPYFADQFLNESYICDIWKVGLRFNKNK 399 (462)
Q Consensus 327 ~~~v~~~~~~pq~---~ll~~~~~~~~I----~HgG~~sv~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~g~~~~~~~ 399 (462)
.+|+.+.+++++. .++..+++ +| +-|..++++||+++|+|+|+-+.. .....+++ .+.|...+
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad~--~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~----~~~~~~~~-~~~g~~~~--- 327 (377)
T cd03798 258 EDRVTFLGAVPHEEVPAYYAAADV--FVLPSLREGFGLVLLEAMACGLPVVATDVG----GIPEIITD-GENGLLVP--- 327 (377)
T ss_pred cceEEEeCCCCHHHHHHHHHhcCe--eecchhhccCChHHHHHHhcCCCEEEecCC----ChHHHhcC-CcceeEEC---
Confidence 4788899999975 57877777 65 235567899999999999986543 34455666 36677773
Q ss_pred CCccCHHHHHHHHHHHhcCHHH
Q 044266 400 NGIITREEIMKKVDQVLEDENF 421 (462)
Q Consensus 400 ~~~~~~~~l~~~i~~ll~~~~~ 421 (462)
.-+.+++.++|.++++++..
T Consensus 328 --~~~~~~l~~~i~~~~~~~~~ 347 (377)
T cd03798 328 --PGDPEALAEAILRLLADPWL 347 (377)
T ss_pred --CCCHHHHHHHHHHHhcCcHH
Confidence 36899999999999998874
No 64
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.16 E-value=1.7e-08 Score=96.95 Aligned_cols=134 Identities=13% Similarity=0.155 Sum_probs=85.4
Q ss_pred cEEEEeccCccccCHHHHHHHHHHHHhCC-CCEEEEEcCCCCCcccccCchhHHH-----HhcCCceeecccCcc---cc
Q 044266 271 SVIYVAFGSFTVFDKEQFQELASGLELTN-RPFLWVVRPDITNDAIDAYPEGFQD-----RVATRRQMVGWAPQQ---KV 341 (462)
Q Consensus 271 ~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~pq~---~l 341 (462)
..+++..|+.. ..+....+++++.+.. .++++...+. ....+.+ ...+||.+.+|+|+. .+
T Consensus 191 ~~~i~~~G~~~--~~K~~~~li~a~~~l~~~~l~i~G~g~--------~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~ 260 (357)
T cd03795 191 RPFFLFVGRLV--YYKGLDVLLEAAAALPDAPLVIVGEGP--------LEAELEALAAALGLLDRVRFLGRLDDEEKAAL 260 (357)
T ss_pred CcEEEEecccc--cccCHHHHHHHHHhccCcEEEEEeCCh--------hHHHHHHHHHhcCCcceEEEcCCCCHHHHHHH
Confidence 36677788764 3345666777776665 4444443221 1122221 134789999999975 48
Q ss_pred cCCCCccccee---ccCc-hhhhhhhhcCCceeccccccchhhhHHhHhhhheeeEEeecCCCCccCHHHHHHHHHHHhc
Q 044266 342 LTHPSIACFLS---HCGW-NSTMEGVSNGVPFLCWPYFADQFLNESYICDIWKVGLRFNKNKNGIITREEIMKKVDQVLE 417 (462)
Q Consensus 342 l~~~~~~~~I~---HgG~-~sv~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ll~ 417 (462)
++.+++-++-+ +.|. .+++||+++|+|+|+....+....... +. +.|...+ .-+.+++.++|.++++
T Consensus 261 ~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~i~~---~~-~~g~~~~-----~~d~~~~~~~i~~l~~ 331 (357)
T cd03795 261 LAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGSYVNL---HG-VTGLVVP-----PGDPAALAEAIRRLLE 331 (357)
T ss_pred HHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchhHHhh---CC-CceEEeC-----CCCHHHHHHHHHHHHH
Confidence 87788732223 2343 479999999999999765544433222 23 6777773 3589999999999999
Q ss_pred CHHHHH
Q 044266 418 DENFKA 423 (462)
Q Consensus 418 ~~~~~~ 423 (462)
|++.++
T Consensus 332 ~~~~~~ 337 (357)
T cd03795 332 DPELRE 337 (357)
T ss_pred CHHHHH
Confidence 986443
No 65
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.14 E-value=4.1e-08 Score=93.27 Aligned_cols=94 Identities=18% Similarity=0.227 Sum_probs=65.1
Q ss_pred cCCceeecccCc-ccccCCCCcccceeccC----chhhhhhhhcCCceeccccccchhhhHHhHhhhhe-eeEEeecCCC
Q 044266 327 ATRRQMVGWAPQ-QKVLTHPSIACFLSHCG----WNSTMEGVSNGVPFLCWPYFADQFLNESYICDIWK-VGLRFNKNKN 400 (462)
Q Consensus 327 ~~~v~~~~~~pq-~~ll~~~~~~~~I~HgG----~~sv~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g-~g~~~~~~~~ 400 (462)
..++.+.++... ..++..+++ +|.-.. -++++||+++|+|+|+.+..+.+. .+.+. | .|..++
T Consensus 234 ~~~v~~~g~~~~~~~~~~~ad~--~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~----~~~~~-~~~g~~~~---- 302 (348)
T cd03820 234 EDRVILLGFTKNIEEYYAKASI--FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGPS----EIIED-GVNGLLVP---- 302 (348)
T ss_pred CCeEEEcCCcchHHHHHHhCCE--EEeCccccccCHHHHHHHHcCCCEEEecCCCchH----hhhcc-CcceEEeC----
Confidence 356777777433 368888777 776542 568999999999999876544333 23332 4 777774
Q ss_pred CccCHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 044266 401 GIITREEIMKKVDQVLEDENFKARALDLKETS 432 (462)
Q Consensus 401 ~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~~ 432 (462)
..+.+++.++|.++++|++.+++..+-+..+
T Consensus 303 -~~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~ 333 (348)
T cd03820 303 -NGDVEALAEALLRLMEDEELRKRMGANARES 333 (348)
T ss_pred -CCCHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 3578999999999999997666555544333
No 66
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.13 E-value=9.9e-10 Score=105.91 Aligned_cols=136 Identities=15% Similarity=0.148 Sum_probs=87.2
Q ss_pred CCcEEEEeccCcccc-CHHHHHHHHHHHHhCCC-CEEEEEcCCCCCcccccCchhHHH---Hh---cCCceeecccCcc-
Q 044266 269 QNSVIYVAFGSFTVF-DKEQFQELASGLELTNR-PFLWVVRPDITNDAIDAYPEGFQD---RV---ATRRQMVGWAPQQ- 339 (462)
Q Consensus 269 ~~~~v~vs~Gs~~~~-~~~~~~~~~~a~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~---~~---~~~v~~~~~~pq~- 339 (462)
+++.|++++|..... ..+.+..++++++.... ++++...... .....+.+ +. .+++.+.+..++.
T Consensus 197 ~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~------~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~ 270 (363)
T cd03786 197 PKKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHP------RTRPRIREAGLEFLGHHPNVLLISPLGYLY 270 (363)
T ss_pred CCCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCC------ChHHHHHHHHHhhccCCCCEEEECCcCHHH
Confidence 355788888876543 35567778888765433 2444433220 01112221 12 3677777766544
Q ss_pred --cccCCCCcccceeccCchhhhhhhhcCCceeccccccchhhhHHhHhhhheeeEEeecCCCCccCHHHHHHHHHHHhc
Q 044266 340 --KVLTHPSIACFLSHCGWNSTMEGVSNGVPFLCWPYFADQFLNESYICDIWKVGLRFNKNKNGIITREEIMKKVDQVLE 417 (462)
Q Consensus 340 --~ll~~~~~~~~I~HgG~~sv~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ll~ 417 (462)
.++..+++ ||+.+| |.+.||++.|+|+|+++...+ ++.+.+ -|++..+. -+.+++.++|.++++
T Consensus 271 ~~~l~~~ad~--~v~~Sg-gi~~Ea~~~g~PvI~~~~~~~----~~~~~~-~g~~~~~~------~~~~~i~~~i~~ll~ 336 (363)
T cd03786 271 FLLLLKNADL--VLTDSG-GIQEEASFLGVPVLNLRDRTE----RPETVE-SGTNVLVG------TDPEAILAAIEKLLS 336 (363)
T ss_pred HHHHHHcCcE--EEEcCc-cHHhhhhhcCCCEEeeCCCCc----cchhhh-eeeEEecC------CCHHHHHHHHHHHhc
Confidence 56777777 999999 788899999999999874322 333444 37776662 258999999999999
Q ss_pred CHHHHHH
Q 044266 418 DENFKAR 424 (462)
Q Consensus 418 ~~~~~~~ 424 (462)
|+..+++
T Consensus 337 ~~~~~~~ 343 (363)
T cd03786 337 DEFAYSL 343 (363)
T ss_pred Cchhhhc
Confidence 8765544
No 67
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=99.10 E-value=6.3e-08 Score=93.13 Aligned_cols=89 Identities=12% Similarity=0.050 Sum_probs=62.1
Q ss_pred cCCceeecccCcc---cccCCCCcccceecc----CchhhhhhhhcCCceeccccccchhhhHHhHhhhheeeEEeecCC
Q 044266 327 ATRRQMVGWAPQQ---KVLTHPSIACFLSHC----GWNSTMEGVSNGVPFLCWPYFADQFLNESYICDIWKVGLRFNKNK 399 (462)
Q Consensus 327 ~~~v~~~~~~pq~---~ll~~~~~~~~I~Hg----G~~sv~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~g~~~~~~~ 399 (462)
.+++.+.+|+++. .++..+++ +|.-. -.++++||+++|+|+|+.+.. .....+.+ +.|...+
T Consensus 261 ~~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~e~~~~~~~Eama~G~PvI~~~~~----~~~~~~~~--~~~~~~~--- 329 (375)
T cd03821 261 EDRVTFTGMLYGEDKAAALADADL--FVLPSHSENFGIVVAEALACGTPVVTTDKV----PWQELIEY--GCGWVVD--- 329 (375)
T ss_pred cceEEEcCCCChHHHHHHHhhCCE--EEeccccCCCCcHHHHHHhcCCCEEEcCCC----CHHHHhhc--CceEEeC---
Confidence 4788899999965 46888777 65432 256899999999999997533 33334443 6676664
Q ss_pred CCccCHHHHHHHHHHHhcCHHHHHHHHHHH
Q 044266 400 NGIITREEIMKKVDQVLEDENFKARALDLK 429 (462)
Q Consensus 400 ~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~ 429 (462)
.+.+++.++|.++++|++.+++..+-+
T Consensus 330 ---~~~~~~~~~i~~l~~~~~~~~~~~~~~ 356 (375)
T cd03821 330 ---DDVDALAAALRRALELPQRLKAMGENG 356 (375)
T ss_pred ---CChHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 245999999999999985444443333
No 68
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.09 E-value=4.4e-08 Score=94.50 Aligned_cols=86 Identities=20% Similarity=0.218 Sum_probs=65.0
Q ss_pred cCCceeecccCcc---cccCCCCcccceec----------cCchhhhhhhhcCCceeccccccchhhhHHhHhhhheeeE
Q 044266 327 ATRRQMVGWAPQQ---KVLTHPSIACFLSH----------CGWNSTMEGVSNGVPFLCWPYFADQFLNESYICDIWKVGL 393 (462)
Q Consensus 327 ~~~v~~~~~~pq~---~ll~~~~~~~~I~H----------gG~~sv~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~g~ 393 (462)
.+++.+.+++|+. .+++.+++ +|.- |-.++++||+++|+|+|+-+.. .+...+.+. +.|.
T Consensus 244 ~~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~----~~~e~i~~~-~~g~ 316 (367)
T cd05844 244 GGRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHG----GIPEAVEDG-ETGL 316 (367)
T ss_pred CCeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCC----CchhheecC-CeeE
Confidence 5778888999875 46888887 6642 2357999999999999987654 355566663 7888
Q ss_pred EeecCCCCccCHHHHHHHHHHHhcCHHHHHH
Q 044266 394 RFNKNKNGIITREEIMKKVDQVLEDENFKAR 424 (462)
Q Consensus 394 ~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~ 424 (462)
.++ .-+.+++.++|.++++|++.+++
T Consensus 317 ~~~-----~~d~~~l~~~i~~l~~~~~~~~~ 342 (367)
T cd05844 317 LVP-----EGDVAALAAALGRLLADPDLRAR 342 (367)
T ss_pred EEC-----CCCHHHHHHHHHHHHcCHHHHHH
Confidence 774 35789999999999999864443
No 69
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=99.08 E-value=1.1e-07 Score=99.51 Aligned_cols=366 Identities=12% Similarity=0.081 Sum_probs=184.9
Q ss_pred ccChHHHHHHHHHHHhCC--CEEEEEeCCcchHHHHHhhc---------------CCCCCCCCeEEEEcCCCCCCCCCC-
Q 044266 15 QGHVIPLLEISQCLVKHG--VKVTFLNTDYNHKRVVNALG---------------QNNYIGDQIKLVSIPDGMEPEGDR- 76 (462)
Q Consensus 15 ~GH~~p~l~La~~L~~rG--h~Vt~~~~~~~~~~v~~~~~---------------~~~~~~~~i~~~~i~~~~~~~~~~- 76 (462)
.|+..=.++||++|+++| |+|.++|-......+...+. ......+|+.++.+|-+.......
T Consensus 195 GGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~~~~~~~~~~~~~~~g~rIvRip~GP~~~~l~K 274 (1050)
T TIGR02468 195 GGQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEMLTPRSSENDGDEMGESSGAYIIRIPFGPRDKYIPK 274 (1050)
T ss_pred CChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCccccccccccccccccccCCCCeEEEEeccCCCCCCcCH
Confidence 456667899999999998 99999996543222110000 011234588888888664432222
Q ss_pred CCHHHHHHHHHHhccHHHHHH----HHHHhhccCCCceEEEeCCCcc--hHHHHHHHcCCceEEEccchhHHHHHHHhHh
Q 044266 77 NDLGMLTKTMVRVMPEKLEEL----IENINRLENEKITCVVADGSMG--WVMEVAEKMKLRRAAFWPAAAGLLALSFSVQ 150 (462)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~l----~~~l~~~~~~~~Dlvi~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p 150 (462)
..++..+..|.+.+...+.++ .+.+.......||+|-+..... .+..+++.+|||+|....+......-
T Consensus 275 e~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~~~~~~pDvIHaHyw~sG~aa~~L~~~lgVP~V~T~HSLgr~K~~----- 349 (1050)
T TIGR02468 275 EELWPYIPEFVDGALSHIVNMSKVLGEQIGSGHPVWPYVIHGHYADAGDSAALLSGALNVPMVLTGHSLGRDKLE----- 349 (1050)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCEEEECcchHHHHHHHHHHhhCCCEEEECccchhhhhh-----
Confidence 234555555555444433332 2222110013599999985444 67788999999998866543211000
Q ss_pred hhhcCCCcCCCCCCccccccccCCCCcccCcccchhhhhcCCCcchhhHHHHHHhhhhhccccEEEEcCccccchhhhc-
Q 044266 151 RFLDDGIVDDNGTPVKQQMIQLAPTMAAIHSSKLVWACIGDFNTQKIVFDFTIDNNETIKKAERLICNSTYDLEPGALD- 229 (462)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~- 229 (462)
.+...|..+ ..... ..+ + +...+.--...+..++.++++|..+.+....-
T Consensus 350 ~ll~~g~~~---------------------~~~~~-~~y------~-~~~Ri~~Ee~~l~~Ad~VIasT~qE~~eq~~lY 400 (1050)
T TIGR02468 350 QLLKQGRMS---------------------KEEIN-STY------K-IMRRIEAEELSLDASEIVITSTRQEIEEQWGLY 400 (1050)
T ss_pred hhccccccc---------------------ccccc-ccc------c-hHHHHHHHHHHHHhcCEEEEeCHHHHHHHHHHh
Confidence 000000000 00000 000 0 00000001123577888888887776521000
Q ss_pred ------------------------cCCCccccCcccCC----CCCCCC-----------CCCCCCCCchhhHhhccCCCC
Q 044266 230 ------------------------LIPEFLPIGPLLSS----NRLGNS-----------AGYFWPEDSTCLKWLDQQQQN 270 (462)
Q Consensus 230 ------------------------~~p~v~~vGp~~~~----~~~~~~-----------~~~~~~~~~~~~~~l~~~~~~ 270 (462)
.++++..|.|=... +..... .....+...++..|+.. +++
T Consensus 401 ~~~~~~~~~~~~~~~~~gv~~~g~~~~ri~VIPpGVD~~~F~P~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~~-pdk 479 (1050)
T TIGR02468 401 DGFDVILERKLRARARRGVSCYGRFMPRMAVIPPGMEFSHIVPHDGDMDGETEGNEEHPAKPDPPIWSEIMRFFTN-PRK 479 (1050)
T ss_pred ccCCchhhhhhhhhhcccccccccCCCCeEEeCCCCcHHHccCCCccccchhcccccccccccchhhHHHHhhccc-CCC
Confidence 12344444332111 000000 00001112345566654 333
Q ss_pred cEEEEeccCccccCHHHHHHHHHHHHhCC-----CCEEEEEcCCCCCcccc----cCchhH---HHH--hcCCceeeccc
Q 044266 271 SVIYVAFGSFTVFDKEQFQELASGLELTN-----RPFLWVVRPDITNDAID----AYPEGF---QDR--VATRRQMVGWA 336 (462)
Q Consensus 271 ~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~-----~~~i~~~~~~~~~~~~~----~~~~~~---~~~--~~~~v~~~~~~ 336 (462)
.+++..|... +.+-+..+++|+.... ..+.++++.+.+..... .....+ .++ +.++|.+.+++
T Consensus 480 -pvIL~VGRL~--p~KGi~~LIeAf~~L~~l~~~~nL~LIiG~gdd~d~l~~~~~~~l~~L~~li~~lgL~g~V~FlG~v 556 (1050)
T TIGR02468 480 -PMILALARPD--PKKNITTLVKAFGECRPLRELANLTLIMGNRDDIDEMSSGSSSVLTSVLKLIDKYDLYGQVAYPKHH 556 (1050)
T ss_pred -cEEEEEcCCc--cccCHHHHHHHHHHhHhhccCCCEEEEEecCchhhhhhccchHHHHHHHHHHHHhCCCCeEEecCCC
Confidence 4556667654 3344566667764432 24444454331100000 000111 112 24778888998
Q ss_pred Cccc---ccCCCC--cccceec---cC-chhhhhhhhcCCceeccccccchhhhHHhHhhhheeeEEeecCCCCccCHHH
Q 044266 337 PQQK---VLTHPS--IACFLSH---CG-WNSTMEGVSNGVPFLCWPYFADQFLNESYICDIWKVGLRFNKNKNGIITREE 407 (462)
Q Consensus 337 pq~~---ll~~~~--~~~~I~H---gG-~~sv~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~g~~~~~~~~~~~~~~~ 407 (462)
++.+ ++..++ .++||.- =| -.+++||+++|+|+|+-...+ ....++. -.-|..++. -+++.
T Consensus 557 ~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG----~~EII~~-g~nGlLVdP-----~D~ea 626 (1050)
T TIGR02468 557 KQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGG----PVDIHRV-LDNGLLVDP-----HDQQA 626 (1050)
T ss_pred CHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCC----cHHHhcc-CCcEEEECC-----CCHHH
Confidence 8764 565542 1237764 24 358999999999999986433 2233444 256777743 68999
Q ss_pred HHHHHHHHhcCHHHHHHHHHH
Q 044266 408 IMKKVDQVLEDENFKARALDL 428 (462)
Q Consensus 408 l~~~i~~ll~~~~~~~~a~~l 428 (462)
++++|.++++|++.+++...-
T Consensus 627 LA~AL~~LL~Dpelr~~m~~~ 647 (1050)
T TIGR02468 627 IADALLKLVADKQLWAECRQN 647 (1050)
T ss_pred HHHHHHHHhhCHHHHHHHHHH
Confidence 999999999998655544433
No 70
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=99.07 E-value=2.3e-07 Score=91.65 Aligned_cols=86 Identities=14% Similarity=0.129 Sum_probs=60.9
Q ss_pred cCCceeecccCccc---ccCCC--Ccccceecc---C-chhhhhhhhcCCceeccccccchhhhHHhHhhhheeeEEeec
Q 044266 327 ATRRQMVGWAPQQK---VLTHP--SIACFLSHC---G-WNSTMEGVSNGVPFLCWPYFADQFLNESYICDIWKVGLRFNK 397 (462)
Q Consensus 327 ~~~v~~~~~~pq~~---ll~~~--~~~~~I~Hg---G-~~sv~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~g~~~~~ 397 (462)
.++|.+.+++++.+ +++.+ ++++||... | -.+++||+++|+|+|+... ..+...+.+. ..|..++.
T Consensus 316 ~~~V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~----gg~~eiv~~~-~~G~lv~~ 390 (439)
T TIGR02472 316 YGKVAYPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVATDD----GGPRDIIANC-RNGLLVDV 390 (439)
T ss_pred CceEEecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEEeCC----CCcHHHhcCC-CcEEEeCC
Confidence 57788888888754 46544 123387653 3 4599999999999998854 3344455552 56777743
Q ss_pred CCCCccCHHHHHHHHHHHhcCHHHH
Q 044266 398 NKNGIITREEIMKKVDQVLEDENFK 422 (462)
Q Consensus 398 ~~~~~~~~~~l~~~i~~ll~~~~~~ 422 (462)
-++++++++|.++++|+..+
T Consensus 391 -----~d~~~la~~i~~ll~~~~~~ 410 (439)
T TIGR02472 391 -----LDLEAIASALEDALSDSSQW 410 (439)
T ss_pred -----CCHHHHHHHHHHHHhCHHHH
Confidence 58999999999999998644
No 71
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=99.06 E-value=1.1e-07 Score=88.40 Aligned_cols=300 Identities=16% Similarity=0.126 Sum_probs=160.0
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcc--hHHHHHhhcCCCCCCCCeEEEEcCCCCCCCCCCCCHHHH
Q 044266 5 PHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYN--HKRVVNALGQNNYIGDQIKLVSIPDGMEPEGDRNDLGML 82 (462)
Q Consensus 5 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~--~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~ 82 (462)
|||++--. ..-|+.-+-.+.++|.++||+|.+.+-... .+.+... |+.+..+...- .+....
T Consensus 1 MkIwiDi~-~p~hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~~y---------g~~y~~iG~~g------~~~~~K 64 (335)
T PF04007_consen 1 MKIWIDIT-HPAHVHFFKNIIRELEKRGHEVLITARDKDETEELLDLY---------GIDYIVIGKHG------DSLYGK 64 (335)
T ss_pred CeEEEECC-CchHHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHHHc---------CCCeEEEcCCC------CCHHHH
Confidence 36765443 334999999999999999999999887653 2344444 88888876421 233333
Q ss_pred HHHHHHhccHHHHHHHHHHhhccCCCceEEEeCCCcchHHHHHHHcCCceEEEccchhHHHHHHHhHhhhhcCCCcCCCC
Q 044266 83 TKTMVRVMPEKLEELIENINRLENEKITCVVADGSMGWVMEVAEKMKLRRAAFWPAAAGLLALSFSVQRFLDDGIVDDNG 162 (462)
Q Consensus 83 ~~~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 162 (462)
+.....+ ..++++.+++ .+||++|+- ..+.+..+|..+|+|++.|.-.........+.
T Consensus 65 l~~~~~R----~~~l~~~~~~---~~pDv~is~-~s~~a~~va~~lgiP~I~f~D~e~a~~~~~Lt-------------- 122 (335)
T PF04007_consen 65 LLESIER----QYKLLKLIKK---FKPDVAISF-GSPEAARVAFGLGIPSIVFNDTEHAIAQNRLT-------------- 122 (335)
T ss_pred HHHHHHH----HHHHHHHHHh---hCCCEEEec-CcHHHHHHHHHhCCCeEEEecCchhhccceee--------------
Confidence 3333222 3344555554 899999975 56778889999999999986543221000000
Q ss_pred CCccccccccCCCCcccCcccchhhhhcCCCcchhhHHHHHHhhhhhccccEEE-EcCccccchhhhccCCCccccCccc
Q 044266 163 TPVKQQMIQLAPTMAAIHSSKLVWACIGDFNTQKIVFDFTIDNNETIKKAERLI-CNSTYDLEPGALDLIPEFLPIGPLL 241 (462)
Q Consensus 163 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~ns~~~le~~~~~~~p~v~~vGp~~ 241 (462)
.|..+ ....|.. ........ .-.+ +-+. .++..++-+- =|
T Consensus 123 ~Pla~--~i~~P~~-----------------~~~~~~~~------~G~~-~~i~~y~G~~E~ayl-----------~~-- 163 (335)
T PF04007_consen 123 LPLAD--VIITPEA-----------------IPKEFLKR------FGAK-NQIRTYNGYKELAYL-----------HP-- 163 (335)
T ss_pred hhcCC--eeECCcc-----------------cCHHHHHh------cCCc-CCEEEECCeeeEEee-----------cC--
Confidence 00000 0000000 00000000 0000 0111 2222222211 01
Q ss_pred CCCCCCCCCCCCCCCCchhhHhhccCCCCcEEEEeccCccc----cCHHHHHHHHHHHHhCCCCEEEEEcCCCCCccccc
Q 044266 242 SSNRLGNSAGYFWPEDSTCLKWLDQQQQNSVIYVAFGSFTV----FDKEQFQELASGLELTNRPFLWVVRPDITNDAIDA 317 (462)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~----~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~ 317 (462)
..+|++..+-+.. ++++.|++=+.+... .....+..+++.+++.+..+|...... .
T Consensus 164 ------------F~Pd~~vl~~lg~-~~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~vV~ipr~~-------~ 223 (335)
T PF04007_consen 164 ------------FKPDPEVLKELGL-DDEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRNVVIIPRYE-------D 223 (335)
T ss_pred ------------CCCChhHHHHcCC-CCCCEEEEEeccccCeeecCccchHHHHHHHHHhhCceEEEecCCc-------c
Confidence 1223333343442 245688887766422 233456778899988876644443322 1
Q ss_pred CchhHHHHhcCCceee-cccCcccccCCCCcccceeccCchhhhhhhhcCCceeccccccchhhhHHhHhhhheeeEEee
Q 044266 318 YPEGFQDRVATRRQMV-GWAPQQKVLTHPSIACFLSHCGWNSTMEGVSNGVPFLCWPYFADQFLNESYICDIWKVGLRFN 396 (462)
Q Consensus 318 ~~~~~~~~~~~~v~~~-~~~pq~~ll~~~~~~~~I~HgG~~sv~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~g~~~~ 396 (462)
.++-+. .. ++.+. .-+.-.++|.++++ +|+-|| ....||...|+|.|.+ +-++-...-+.+.+. |.-.+
T Consensus 224 ~~~~~~-~~--~~~i~~~~vd~~~Ll~~a~l--~Ig~gg-TMa~EAA~LGtPaIs~-~~g~~~~vd~~L~~~-Gll~~-- 293 (335)
T PF04007_consen 224 QRELFE-KY--GVIIPPEPVDGLDLLYYADL--VIGGGG-TMAREAALLGTPAISC-FPGKLLAVDKYLIEK-GLLYH-- 293 (335)
T ss_pred hhhHHh-cc--CccccCCCCCHHHHHHhcCE--EEeCCc-HHHHHHHHhCCCEEEe-cCCcchhHHHHHHHC-CCeEe--
Confidence 111111 11 13332 44444579999888 998777 7788999999999974 112222222445553 65333
Q ss_pred cCCCCccCHHHHHHHHHHHh
Q 044266 397 KNKNGIITREEIMKKVDQVL 416 (462)
Q Consensus 397 ~~~~~~~~~~~l~~~i~~ll 416 (462)
..+++++.+.+++.+
T Consensus 294 -----~~~~~ei~~~v~~~~ 308 (335)
T PF04007_consen 294 -----STDPDEIVEYVRKNL 308 (335)
T ss_pred -----cCCHHHHHHHHHHhh
Confidence 357888887666654
No 72
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=99.05 E-value=1.5e-07 Score=91.96 Aligned_cols=79 Identities=19% Similarity=0.228 Sum_probs=55.7
Q ss_pred cCCceeecccCcc---cccCCCCccccee---ccCch-hhhhhhhcCCceeccccccchhhhHHhHhhhheeeEEeecCC
Q 044266 327 ATRRQMVGWAPQQ---KVLTHPSIACFLS---HCGWN-STMEGVSNGVPFLCWPYFADQFLNESYICDIWKVGLRFNKNK 399 (462)
Q Consensus 327 ~~~v~~~~~~pq~---~ll~~~~~~~~I~---HgG~~-sv~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~g~~~~~~~ 399 (462)
.+++.+.+|+|+. .+|+.+|+ +|. +-|.| +++||+++|+|+|+-+..+ ....+.+ |.+...
T Consensus 249 ~~~v~~~G~~~~~~~~~~l~~ad~--~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i~~--~~~~~~---- 316 (398)
T cd03796 249 QDRVELLGAVPHERVRDVLVQGHI--FLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVLPP--DMILLA---- 316 (398)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhheeC--Cceeec----
Confidence 4678889999864 48878887 664 33444 9999999999999876542 2234443 433222
Q ss_pred CCccCHHHHHHHHHHHhcCH
Q 044266 400 NGIITREEIMKKVDQVLEDE 419 (462)
Q Consensus 400 ~~~~~~~~l~~~i~~ll~~~ 419 (462)
. -+.+++.++|.+++++.
T Consensus 317 -~-~~~~~l~~~l~~~l~~~ 334 (398)
T cd03796 317 -E-PDVESIVRKLEEAISIL 334 (398)
T ss_pred -C-CCHHHHHHHHHHHHhCh
Confidence 1 27899999999999864
No 73
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=99.01 E-value=1.2e-07 Score=90.21 Aligned_cols=319 Identities=14% Similarity=0.094 Sum_probs=162.1
Q ss_pred EEEEEcCC--CccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcCCCCCCCCCCCCHHHHH
Q 044266 6 HVLAFPYP--AQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIPDGMEPEGDRNDLGMLT 83 (462)
Q Consensus 6 ~Il~~~~~--~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~ 83 (462)
||++++.. ..|+-..+..+++.|.+.||+|++++............ .......... . ........
T Consensus 1 kIl~~~~~~~~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~~~~~~~~-------~~~~~~~~~~--~----~~~~~~~~ 67 (353)
T cd03811 1 KILFVIPSLGGGGAERVLLNLANGLDKRGYDVTLVVLRDEGDYLELLP-------SNVKLIPVRV--L----KLKSLRDL 67 (353)
T ss_pred CeEEEeecccCCCcchhHHHHHHHHHhcCceEEEEEcCCCCccccccc-------cchhhhceee--e----ecccccch
Confidence 46655544 56888899999999999999999999876543221110 0000000000 0 00000000
Q ss_pred HHHHHhccHHHHHHHHHHhhccCCCceEEEeCCC-cc-hHHHHHHHcCCceEEEccchhHHHHHHHhHhhhhcCCCcCCC
Q 044266 84 KTMVRVMPEKLEELIENINRLENEKITCVVADGS-MG-WVMEVAEKMKLRRAAFWPAAAGLLALSFSVQRFLDDGIVDDN 161 (462)
Q Consensus 84 ~~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~-~~-~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 161 (462)
.....+.++++. .+||+|++... .. ....++...++|.+............
T Consensus 68 -----~~~~~~~~~~~~------~~~dii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---------------- 120 (353)
T cd03811 68 -----LAILRLRRLLRK------EKPDVVISHLTTTPNVLALLAARLGTKLIVWEHNSLSLELK---------------- 120 (353)
T ss_pred -----hHHHHHHHHHHh------cCCCEEEEcCccchhHHHHHHhhcCCceEEEEcCcchhhhc----------------
Confidence 011223444444 89999999976 22 33333444478988754433211000
Q ss_pred CCCccccccccCCCCcccCcccchhhhhcCCCcchhhHHHHHHhhhhhccccEEEEcCccccchhhhccC---CCccccC
Q 044266 162 GTPVKQQMIQLAPTMAAIHSSKLVWACIGDFNTQKIVFDFTIDNNETIKKAERLICNSTYDLEPGALDLI---PEFLPIG 238 (462)
Q Consensus 162 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~---p~v~~vG 238 (462)
... . .. .........++.+++.+....+.-..... .++..+.
T Consensus 121 -------------~~~-------~-~~--------------~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~~~vi~ 165 (353)
T cd03811 121 -------------RKL-------R-LL--------------LLIRKLYRRADKIVAVSEGVKEDLLKLLGIPPDKIEVIY 165 (353)
T ss_pred -------------cch-------h-HH--------------HHHHhhccccceEEEeccchhhhHHHhhcCCccccEEec
Confidence 000 0 00 01112345677777777665443211111 3444444
Q ss_pred cccCCCCCCCCCCCCCCCCchhhHhhccCCCCcEEEEeccCccccCHHHHHHHHHHHHhC-----CCCEEEEEcCCCCCc
Q 044266 239 PLLSSNRLGNSAGYFWPEDSTCLKWLDQQQQNSVIYVAFGSFTVFDKEQFQELASGLELT-----NRPFLWVVRPDITND 313 (462)
Q Consensus 239 p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~-----~~~~i~~~~~~~~~~ 313 (462)
+........ .....- . .....+++.+++..|+... .+....+++++... +.++++. +.+.
T Consensus 166 ~~~~~~~~~-------~~~~~~-~-~~~~~~~~~~i~~~g~~~~--~k~~~~~i~~~~~l~~~~~~~~l~i~-G~~~--- 230 (353)
T cd03811 166 NPIDIEEIR-------ALAEEP-L-ELGIPPDGPVILAVGRLSP--QKGFDTLIRAFALLRKEGPDARLVIL-GDGP--- 230 (353)
T ss_pred CCcChhhcC-------cccchh-h-hcCCCCCceEEEEEecchh--hcChHHHHHHHHHhhhcCCCceEEEE-cCCc---
Confidence 332221111 000000 0 0011234477788887652 22334444444332 3344443 3221
Q ss_pred ccccCchhHHHH--hcCCceeecccCcc-cccCCCCcccceec----cCchhhhhhhhcCCceeccccccchhhhHHhHh
Q 044266 314 AIDAYPEGFQDR--VATRRQMVGWAPQQ-KVLTHPSIACFLSH----CGWNSTMEGVSNGVPFLCWPYFADQFLNESYIC 386 (462)
Q Consensus 314 ~~~~~~~~~~~~--~~~~v~~~~~~pq~-~ll~~~~~~~~I~H----gG~~sv~eal~~GvP~l~~P~~~DQ~~na~~v~ 386 (462)
....+ ....+. ..+++.+.++.+.. .++..+++ +|.- |..++++||+++|+|+|+.... .....++
T Consensus 231 ~~~~~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~--~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i~ 303 (353)
T cd03811 231 LREEL-EALAKELGLADRVHFLGFQSNPYPYLKAADL--FVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREILE 303 (353)
T ss_pred cHHHH-HHHHHhcCCCccEEEecccCCHHHHHHhCCE--EEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHhc
Confidence 00000 011112 24678888887763 68888887 6632 3356899999999999986443 5556677
Q ss_pred hhheeeEEeecCCCCccCHHHH---HHHHHHHhcCHHHHHHHHH
Q 044266 387 DIWKVGLRFNKNKNGIITREEI---MKKVDQVLEDENFKARALD 427 (462)
Q Consensus 387 ~~~g~g~~~~~~~~~~~~~~~l---~~~i~~ll~~~~~~~~a~~ 427 (462)
+. +.|...+. -+.+.+ .+++.+++.+++.++++..
T Consensus 304 ~~-~~g~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 341 (353)
T cd03811 304 DG-ENGLLVPV-----GDEAALAAAALALLDLLLDPELRERLAA 341 (353)
T ss_pred CC-CceEEECC-----CCHHHHHHHHHHHHhccCChHHHHHHHH
Confidence 64 78888743 466676 6777777777765554444
No 74
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=99.00 E-value=1.2e-07 Score=91.14 Aligned_cols=134 Identities=16% Similarity=0.234 Sum_probs=81.1
Q ss_pred cEEEEeccCccccCHHHHHHHHHHHHhCC--CCEEEEEcCCCCCcccccCchhHHHH--hcCCceeecccCc--c---cc
Q 044266 271 SVIYVAFGSFTVFDKEQFQELASGLELTN--RPFLWVVRPDITNDAIDAYPEGFQDR--VATRRQMVGWAPQ--Q---KV 341 (462)
Q Consensus 271 ~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~pq--~---~l 341 (462)
+.+++..|.......+.+..+++++.... .++++ ++.+. ....+ ....+. .+++|.+.+|+++ . +.
T Consensus 180 ~~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~i-vG~g~---~~~~l-~~~~~~~~l~~~v~f~G~~~~~~~~~~~~ 254 (359)
T PRK09922 180 PAVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLHI-IGDGS---DFEKC-KAYSRELGIEQRIIWHGWQSQPWEVVQQK 254 (359)
T ss_pred CcEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEEE-EeCCc---cHHHH-HHHHHHcCCCCeEEEecccCCcHHHHHHH
Confidence 35667778764333444666777775543 33443 33331 11111 111111 3478999999864 2 24
Q ss_pred cCCCCcccceec----cCchhhhhhhhcCCceeccc-cccchhhhHHhHhhhheeeEEeecCCCCccCHHHHHHHHHHHh
Q 044266 342 LTHPSIACFLSH----CGWNSTMEGVSNGVPFLCWP-YFADQFLNESYICDIWKVGLRFNKNKNGIITREEIMKKVDQVL 416 (462)
Q Consensus 342 l~~~~~~~~I~H----gG~~sv~eal~~GvP~l~~P-~~~DQ~~na~~v~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ll 416 (462)
++.+++ +|.. |--.++.||+++|+|+|+.- ..+ ....+++. ..|..++ .-+.++++++|.+++
T Consensus 255 ~~~~d~--~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g----~~eiv~~~-~~G~lv~-----~~d~~~la~~i~~l~ 322 (359)
T PRK09922 255 IKNVSA--LLLTSKFEGFPMTLLEAMSYGIPCISSDCMSG----PRDIIKPG-LNGELYT-----PGNIDEFVGKLNKVI 322 (359)
T ss_pred HhcCcE--EEECCcccCcChHHHHHHHcCCCEEEeCCCCC----hHHHccCC-CceEEEC-----CCCHHHHHHHHHHHH
Confidence 545565 6643 33579999999999999875 322 22344542 5677774 359999999999999
Q ss_pred cCHHH
Q 044266 417 EDENF 421 (462)
Q Consensus 417 ~~~~~ 421 (462)
+|++.
T Consensus 323 ~~~~~ 327 (359)
T PRK09922 323 SGEVK 327 (359)
T ss_pred hCccc
Confidence 99863
No 75
>PLN02275 transferase, transferring glycosyl groups
Probab=99.00 E-value=2.7e-07 Score=89.09 Aligned_cols=126 Identities=8% Similarity=-0.039 Sum_probs=73.4
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcCCCCCCCCCCCCH
Q 044266 1 MLRRPHVLAFPYPAQGHVIPLLEISQCLVKHGV-KVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIPDGMEPEGDRNDL 79 (462)
Q Consensus 1 ~~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh-~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~ 79 (462)
|+.+.|+.++..+-.|.-..+..++..|+++|| +|++++.+......+.. ...+++++.++. ..........
T Consensus 1 ~~~~~~~~~~~~~~~g~~~r~~~~~~~l~~~~~~~v~vi~~~~~~~~~~~~------~~~~v~v~r~~~-~~~~~~~~~~ 73 (371)
T PLN02275 1 MGRRGRAAVVVLGDFGRSPRMQYHALSLARQASFQVDVVAYGGSEPIPALL------NHPSIHIHLMVQ-PRLLQRLPRV 73 (371)
T ss_pred CCCccEEEEEEecCCCCCHHHHHHHHHHHhcCCceEEEEEecCCCCCHHHh------cCCcEEEEECCC-cccccccccc
Confidence 677778888888999999999999999999886 79999875532211111 113788888875 2111111122
Q ss_pred HHHHHHHHHhccHHHHHHHHH--HhhccCCCceEEEeCC-Ccc----hHHHHHHHcCCceEEEcc
Q 044266 80 GMLTKTMVRVMPEKLEELIEN--INRLENEKITCVVADG-SMG----WVMEVAEKMKLRRAAFWP 137 (462)
Q Consensus 80 ~~~~~~~~~~~~~~~~~l~~~--l~~~~~~~~Dlvi~D~-~~~----~~~~~A~~lgiP~v~~~~ 137 (462)
...+..+.. ....+..++.. .+. .+||+|++.. ... .+..++...++|++..++
T Consensus 74 ~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~DvV~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h 134 (371)
T PLN02275 74 LYALALLLK-VAIQFLMLLWFLCVKI---PRPDVFLVQNPPSVPTLAVVKLACWLRRAKFVIDWH 134 (371)
T ss_pred hHHHHHHHH-HHHHHHHHHHHHHhhC---CCCCEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEcC
Confidence 221111111 11112222221 122 8999999853 222 233556678999987544
No 76
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=99.00 E-value=5.5e-07 Score=86.35 Aligned_cols=138 Identities=17% Similarity=0.136 Sum_probs=79.4
Q ss_pred CcEEEEeccCccc-cCHHHHHHHHHHHHhC--CCCEEEEEcCCCCCcccccCchhHH---H--HhcCCceeecccCc-cc
Q 044266 270 NSVIYVAFGSFTV-FDKEQFQELASGLELT--NRPFLWVVRPDITNDAIDAYPEGFQ---D--RVATRRQMVGWAPQ-QK 340 (462)
Q Consensus 270 ~~~v~vs~Gs~~~-~~~~~~~~~~~a~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~---~--~~~~~v~~~~~~pq-~~ 340 (462)
+..+++..|+... ...+.+..++..+... +.+++++-... . ...+...+. + ...++|++.++.+. ..
T Consensus 184 ~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~ivG~~~-~---~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~ 259 (355)
T cd03819 184 GKPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIVGDAQ-G---RRFYYAELLELIKRLGLQDRVTFVGHCSDMPA 259 (355)
T ss_pred CceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEEECCc-c---cchHHHHHHHHHHHcCCcceEEEcCCcccHHH
Confidence 3466777787643 2334444455555443 33444333222 1 111111111 1 12467888888544 36
Q ss_pred ccCCCCcccceec----cC-chhhhhhhhcCCceeccccccchhhhHHhHhhhheeeEEeecCCCCccCHHHHHHHHHHH
Q 044266 341 VLTHPSIACFLSH----CG-WNSTMEGVSNGVPFLCWPYFADQFLNESYICDIWKVGLRFNKNKNGIITREEIMKKVDQV 415 (462)
Q Consensus 341 ll~~~~~~~~I~H----gG-~~sv~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~g~~~~~~~~~~~~~~~l~~~i~~l 415 (462)
+|..+++ +|+= -| .++++||+++|+|+|+... ......+.+. +.|..++ .-+.+++.++|..+
T Consensus 260 ~l~~ad~--~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~----~~~~e~i~~~-~~g~~~~-----~~~~~~l~~~i~~~ 327 (355)
T cd03819 260 AYALADI--VVSASTEPEAFGRTAVEAQAMGRPVIASDH----GGARETVRPG-ETGLLVP-----PGDAEALAQALDQI 327 (355)
T ss_pred HHHhCCE--EEecCCCCCCCchHHHHHHhcCCCEEEcCC----CCcHHHHhCC-CceEEeC-----CCCHHHHHHHHHHH
Confidence 8888888 5532 23 3599999999999998743 3344455552 5787774 35899999999655
Q ss_pred hc-CHHHHH
Q 044266 416 LE-DENFKA 423 (462)
Q Consensus 416 l~-~~~~~~ 423 (462)
+. |++.++
T Consensus 328 ~~~~~~~~~ 336 (355)
T cd03819 328 LSLLPEGRA 336 (355)
T ss_pred HhhCHHHHH
Confidence 54 565443
No 77
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.98 E-value=5.2e-07 Score=86.65 Aligned_cols=86 Identities=13% Similarity=0.094 Sum_probs=60.9
Q ss_pred cCCceeecccCc-ccccCCCCcccceec----cCchhhhhhhhcCCceeccccccchhhhHHhHhhhheeeEEeecCCCC
Q 044266 327 ATRRQMVGWAPQ-QKVLTHPSIACFLSH----CGWNSTMEGVSNGVPFLCWPYFADQFLNESYICDIWKVGLRFNKNKNG 401 (462)
Q Consensus 327 ~~~v~~~~~~pq-~~ll~~~~~~~~I~H----gG~~sv~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~g~~~~~~~~~ 401 (462)
.+++.+.++..+ ..++..+++ +|+- |-..+++||+++|+|+|+-...+ ....+.. +.|....
T Consensus 248 ~~~v~~~g~~~~~~~~~~~adi--~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i~~--~~~~~~~----- 314 (358)
T cd03812 248 EDKVIFLGVRNDVPELLQAMDV--FLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDLTD--LVKFLSL----- 314 (358)
T ss_pred CCcEEEecccCCHHHHHHhcCE--EEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhhcc--CccEEeC-----
Confidence 467888888544 368888777 6653 44679999999999999865433 3334443 4555552
Q ss_pred ccCHHHHHHHHHHHhcCHHHHHHH
Q 044266 402 IITREEIMKKVDQVLEDENFKARA 425 (462)
Q Consensus 402 ~~~~~~l~~~i~~ll~~~~~~~~a 425 (462)
.-++++++++|.++++|++.+++.
T Consensus 315 ~~~~~~~a~~i~~l~~~~~~~~~~ 338 (358)
T cd03812 315 DESPEIWAEEILKLKSEDRRERSS 338 (358)
T ss_pred CCCHHHHHHHHHHHHhCcchhhhh
Confidence 236899999999999999765544
No 78
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.95 E-value=4.1e-07 Score=87.18 Aligned_cols=84 Identities=18% Similarity=0.262 Sum_probs=62.0
Q ss_pred cCCceeecccCcc---cccCCCCccccee----------ccCchhhhhhhhcCCceeccccccchhhhHHhHhhhheeeE
Q 044266 327 ATRRQMVGWAPQQ---KVLTHPSIACFLS----------HCGWNSTMEGVSNGVPFLCWPYFADQFLNESYICDIWKVGL 393 (462)
Q Consensus 327 ~~~v~~~~~~pq~---~ll~~~~~~~~I~----------HgG~~sv~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~g~ 393 (462)
++|+.+.+++|+. .++..+++ +|. -|.-++++||+++|+|+|+.+... ....+++ ...|.
T Consensus 235 ~~~v~~~g~~~~~~l~~~~~~adi--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~----~~~~i~~-~~~g~ 307 (355)
T cd03799 235 EDRVTLLGAKSQEEVRELLRAADL--FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSG----IPELVED-GETGL 307 (355)
T ss_pred CCeEEECCcCChHHHHHHHHhCCE--EEecceecCCCCccCccHHHHHHHHcCCCEEecCCCC----cchhhhC-CCceE
Confidence 5789999999865 47777887 665 234578999999999999875432 2234444 24787
Q ss_pred EeecCCCCccCHHHHHHHHHHHhcCHHHH
Q 044266 394 RFNKNKNGIITREEIMKKVDQVLEDENFK 422 (462)
Q Consensus 394 ~~~~~~~~~~~~~~l~~~i~~ll~~~~~~ 422 (462)
.+. .-+.+++.++|.++++|+..+
T Consensus 308 ~~~-----~~~~~~l~~~i~~~~~~~~~~ 331 (355)
T cd03799 308 LVP-----PGDPEALADAIERLLDDPELR 331 (355)
T ss_pred EeC-----CCCHHHHHHHHHHHHhCHHHH
Confidence 774 248999999999999998643
No 79
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.94 E-value=4.1e-07 Score=87.42 Aligned_cols=84 Identities=13% Similarity=0.204 Sum_probs=60.7
Q ss_pred cCCceee-cccCcc---cccCCCCcccceec------cCchhhhhhhhcCCceeccccccchhhhHHhHhhhheeeEEee
Q 044266 327 ATRRQMV-GWAPQQ---KVLTHPSIACFLSH------CGWNSTMEGVSNGVPFLCWPYFADQFLNESYICDIWKVGLRFN 396 (462)
Q Consensus 327 ~~~v~~~-~~~pq~---~ll~~~~~~~~I~H------gG~~sv~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~g~~~~ 396 (462)
.+++.+. +|+|+. .+++.+++ +|.- |..++++||+++|+|+|+.+..+ ...+... +.|..++
T Consensus 246 ~~~v~~~~~~~~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~~-~~g~~~~ 317 (366)
T cd03822 246 ADRVIFINRYLPDEELPELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLDG-GTGLLVP 317 (366)
T ss_pred CCcEEEecCcCCHHHHHHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeeeC-CCcEEEc
Confidence 4678777 458864 58888777 6632 34568999999999999987554 2334443 6777774
Q ss_pred cCCCCccCHHHHHHHHHHHhcCHHHHH
Q 044266 397 KNKNGIITREEIMKKVDQVLEDENFKA 423 (462)
Q Consensus 397 ~~~~~~~~~~~l~~~i~~ll~~~~~~~ 423 (462)
. -+.+++.++|.++++|++.++
T Consensus 318 ~-----~d~~~~~~~l~~l~~~~~~~~ 339 (366)
T cd03822 318 P-----GDPAALAEAIRRLLADPELAQ 339 (366)
T ss_pred C-----CCHHHHHHHHHHHHcChHHHH
Confidence 2 468999999999999875444
No 80
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.94 E-value=1.9e-07 Score=88.78 Aligned_cols=128 Identities=11% Similarity=0.064 Sum_probs=79.7
Q ss_pred EEEEeccCccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCcccccCchhHHHH--hcCCceeecccCcc---cccCCCC
Q 044266 272 VIYVAFGSFTVFDKEQFQELASGLELTNRPFLWVVRPDITNDAIDAYPEGFQDR--VATRRQMVGWAPQQ---KVLTHPS 346 (462)
Q Consensus 272 ~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~pq~---~ll~~~~ 346 (462)
.+++..|... ..+....+++++++.+.++++..... ....+.....+. ..+++.+.+++++. .+++.++
T Consensus 172 ~~i~~~Gr~~--~~Kg~~~li~~~~~~~~~l~i~G~~~----~~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~d 245 (335)
T cd03802 172 DYLLFLGRIS--PEKGPHLAIRAARRAGIPLKLAGPVS----DPDYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNAR 245 (335)
T ss_pred CEEEEEEeec--cccCHHHHHHHHHhcCCeEEEEeCCC----CHHHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhCc
Confidence 3445567653 33445667788887777776654432 111111111111 25789999999975 4687777
Q ss_pred ccccee----ccC-chhhhhhhhcCCceeccccccchhhhHHhHhhhheeeEEeecCCCCccCHHHHHHHHHHHhcCH
Q 044266 347 IACFLS----HCG-WNSTMEGVSNGVPFLCWPYFADQFLNESYICDIWKVGLRFNKNKNGIITREEIMKKVDQVLEDE 419 (462)
Q Consensus 347 ~~~~I~----HgG-~~sv~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ll~~~ 419 (462)
+ +|. +-| ..+++||+++|+|+|+... ..+...+.+. ..|...+ . .+++.++|.+++..+
T Consensus 246 ~--~v~ps~~~E~~~~~~lEAma~G~PvI~~~~----~~~~e~i~~~-~~g~l~~----~---~~~l~~~l~~l~~~~ 309 (335)
T cd03802 246 A--LLFPILWEEPFGLVMIEAMACGTPVIAFRR----GAVPEVVEDG-VTGFLVD----S---VEELAAAVARADRLD 309 (335)
T ss_pred E--EEeCCcccCCcchHHHHHHhcCCCEEEeCC----CCchhheeCC-CcEEEeC----C---HHHHHHHHHHHhccH
Confidence 7 543 234 3489999999999998754 3334444542 3677663 2 999999999997644
No 81
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.91 E-value=6.4e-07 Score=86.18 Aligned_cols=129 Identities=17% Similarity=0.249 Sum_probs=72.8
Q ss_pred EEeccCccccCHHHHHHHHHHHHhCC--CCEEEEEcCCCCCcccccCchhHH--HHhcCCceeecccCcc---cccCCCC
Q 044266 274 YVAFGSFTVFDKEQFQELASGLELTN--RPFLWVVRPDITNDAIDAYPEGFQ--DRVATRRQMVGWAPQQ---KVLTHPS 346 (462)
Q Consensus 274 ~vs~Gs~~~~~~~~~~~~~~a~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~pq~---~ll~~~~ 346 (462)
++..|+.. ..+.+..+++++.+.. .+++++ +.+.. ...+...+. ....++|.+.+++|+. +++..++
T Consensus 196 i~~~G~~~--~~Kg~~~li~a~~~l~~~~~l~iv-G~~~~---~~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ad 269 (363)
T cd04955 196 YLLVGRIV--PENNIDDLIEAFSKSNSGKKLVIV-GNADH---NTPYGKLLKEKAAADPRIIFVGPIYDQELLELLRYAA 269 (363)
T ss_pred EEEEeccc--ccCCHHHHHHHHHhhccCceEEEE-cCCCC---cchHHHHHHHHhCCCCcEEEccccChHHHHHHHHhCC
Confidence 45578764 3334555666665554 444443 33211 111111111 1235789999999986 4666666
Q ss_pred cccceeccCc-----hhhhhhhhcCCceeccccccchhhhHHhHhhhheeeEEeecCCCCccCHHHHHHHHHHHhcCHHH
Q 044266 347 IACFLSHCGW-----NSTMEGVSNGVPFLCWPYFADQFLNESYICDIWKVGLRFNKNKNGIITREEIMKKVDQVLEDENF 421 (462)
Q Consensus 347 ~~~~I~HgG~-----~sv~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ll~~~~~ 421 (462)
+ ++-++-. ++++||+++|+|+|+..... +...++. .|..+.. .+.++++|.++++|++.
T Consensus 270 ~--~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~----~~e~~~~---~g~~~~~-------~~~l~~~i~~l~~~~~~ 333 (363)
T cd04955 270 L--FYLHGHSVGGTNPSLLEAMAYGCPVLASDNPF----NREVLGD---KAIYFKV-------GDDLASLLEELEADPEE 333 (363)
T ss_pred E--EEeCCccCCCCChHHHHHHHcCCCEEEecCCc----cceeecC---CeeEecC-------chHHHHHHHHHHhCHHH
Confidence 6 6554433 47999999999999875432 2222222 2333321 11299999999998854
Q ss_pred HHH
Q 044266 422 KAR 424 (462)
Q Consensus 422 ~~~ 424 (462)
+++
T Consensus 334 ~~~ 336 (363)
T cd04955 334 VSA 336 (363)
T ss_pred HHH
Confidence 443
No 82
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.90 E-value=3.8e-06 Score=80.32 Aligned_cols=81 Identities=16% Similarity=0.223 Sum_probs=56.7
Q ss_pred cCCceeecccCc-ccccCCCCcccceeccC----chhhhhhhhcCCceeccccccchhhhHHhHhhhheeeEEeecCCCC
Q 044266 327 ATRRQMVGWAPQ-QKVLTHPSIACFLSHCG----WNSTMEGVSNGVPFLCWPYFADQFLNESYICDIWKVGLRFNKNKNG 401 (462)
Q Consensus 327 ~~~v~~~~~~pq-~~ll~~~~~~~~I~HgG----~~sv~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~g~~~~~~~~~ 401 (462)
.+++.+.+...+ ..+++.+++ +|..+. .+++.||+++|+|+|+.. ...+...+.+ .|..++
T Consensus 250 ~~~v~~~g~~~~~~~~~~~adi--~v~ps~~e~~~~~~~Ea~a~g~PvI~~~----~~~~~e~~~~---~g~~~~----- 315 (365)
T cd03807 250 EDKVILLGERSDVPALLNALDV--FVLSSLSEGFPNVLLEAMACGLPVVATD----VGDNAELVGD---TGFLVP----- 315 (365)
T ss_pred CceEEEccccccHHHHHHhCCE--EEeCCccccCCcHHHHHHhcCCCEEEcC----CCChHHHhhc---CCEEeC-----
Confidence 356666665544 368888887 776544 479999999999999854 3344444443 344453
Q ss_pred ccCHHHHHHHHHHHhcCHHH
Q 044266 402 IITREEIMKKVDQVLEDENF 421 (462)
Q Consensus 402 ~~~~~~l~~~i~~ll~~~~~ 421 (462)
.-+.+++.++|.++++|++.
T Consensus 316 ~~~~~~l~~~i~~l~~~~~~ 335 (365)
T cd03807 316 PGDPEALAEAIEALLADPAL 335 (365)
T ss_pred CCCHHHHHHHHHHHHhChHH
Confidence 24799999999999998743
No 83
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.88 E-value=2.5e-06 Score=82.64 Aligned_cols=84 Identities=11% Similarity=0.075 Sum_probs=60.1
Q ss_pred CCceeecccCc-ccccCCCCccccee--c--cCchhhhhhhhcCCceeccccccchhhhHHhHhhhheeeEEeecCCCCc
Q 044266 328 TRRQMVGWAPQ-QKVLTHPSIACFLS--H--CGWNSTMEGVSNGVPFLCWPYFADQFLNESYICDIWKVGLRFNKNKNGI 402 (462)
Q Consensus 328 ~~v~~~~~~pq-~~ll~~~~~~~~I~--H--gG~~sv~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~g~~~~~~~~~~ 402 (462)
.++.+.++..+ ..+|+.+|+ +|. + |--.+++||+++|+|+|+-.. ..+...+++. ..|..++ .
T Consensus 255 ~~v~~~g~~~~~~~~~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~----~g~~e~i~~~-~~g~~~~-----~ 322 (374)
T TIGR03088 255 HLVWLPGERDDVPALMQALDL--FVLPSLAEGISNTILEAMASGLPVIATAV----GGNPELVQHG-VTGALVP-----P 322 (374)
T ss_pred ceEEEcCCcCCHHHHHHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCC----CCcHHHhcCC-CceEEeC-----C
Confidence 45666665544 368888888 663 2 446699999999999999654 3345555553 5677774 3
Q ss_pred cCHHHHHHHHHHHhcCHHHHH
Q 044266 403 ITREEIMKKVDQVLEDENFKA 423 (462)
Q Consensus 403 ~~~~~l~~~i~~ll~~~~~~~ 423 (462)
-+.++++++|.++++|++.++
T Consensus 323 ~d~~~la~~i~~l~~~~~~~~ 343 (374)
T TIGR03088 323 GDAVALARALQPYVSDPAARR 343 (374)
T ss_pred CCHHHHHHHHHHHHhCHHHHH
Confidence 588999999999999886443
No 84
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.87 E-value=1.1e-06 Score=86.81 Aligned_cols=214 Identities=12% Similarity=0.058 Sum_probs=111.4
Q ss_pred cccEEEEcCccccchhhhccCCCccccCc-ccCCCCCCCCCCCCCCCCchhhHhhccCCCCcEEEEeccCccccCHHHHH
Q 044266 211 KAERLICNSTYDLEPGALDLIPEFLPIGP-LLSSNRLGNSAGYFWPEDSTCLKWLDQQQQNSVIYVAFGSFTVFDKEQFQ 289 (462)
Q Consensus 211 ~~~~~l~ns~~~le~~~~~~~p~v~~vGp-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~ 289 (462)
..|.+++--++|-++- ....-++.|||. +....... ...++..+-+.-.+++++|-+--||....-...+.
T Consensus 361 ~vD~ll~IfPFE~~~y-~~~gv~v~yVGHPL~d~i~~~-------~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllP 432 (608)
T PRK01021 361 YLDLLLLILPFEQNLF-KDSPLRTVYLGHPLVETISSF-------SPNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLT 432 (608)
T ss_pred HhhhheecCccCHHHH-HhcCCCeEEECCcHHhhcccC-------CCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHH
Confidence 4455555555544433 345568999994 44332211 12223333333334567999999997554344455
Q ss_pred HHHHHHH--hC--CCCEEEEEcCCCCCcccccCchhHHHHhc-CC---ceeecccCcccccCCCCcccceeccCchhhhh
Q 044266 290 ELASGLE--LT--NRPFLWVVRPDITNDAIDAYPEGFQDRVA-TR---RQMVGWAPQQKVLTHPSIACFLSHCGWNSTME 361 (462)
Q Consensus 290 ~~~~a~~--~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~---v~~~~~~pq~~ll~~~~~~~~I~HgG~~sv~e 361 (462)
.++++.+ .. +.++++...+. ...+.+.+... .+ +.+..--...++++.+|+ .+.-+|. .++|
T Consensus 433 v~l~aa~~~~l~~~l~fvvp~a~~-------~~~~~i~~~~~~~~~~~~~ii~~~~~~~~m~aaD~--aLaaSGT-aTLE 502 (608)
T PRK01021 433 IQVQAFLASSLASTHQLLVSSANP-------KYDHLILEVLQQEGCLHSHIVPSQFRYELMRECDC--ALAKCGT-IVLE 502 (608)
T ss_pred HHHHHHHHHHhccCeEEEEecCch-------hhHHHHHHHHhhcCCCCeEEecCcchHHHHHhcCe--eeecCCH-HHHH
Confidence 5666655 32 34555543322 01112222121 11 122210012478888777 7777775 4679
Q ss_pred hhhcCCceeccc-cccchhhhHHhHhh--------------hheeeEEeecCCCCccCHHHHHHHHHHHhcCHHHHHHHH
Q 044266 362 GVSNGVPFLCWP-YFADQFLNESYICD--------------IWKVGLRFNKNKNGIITREEIMKKVDQVLEDENFKARAL 426 (462)
Q Consensus 362 al~~GvP~l~~P-~~~DQ~~na~~v~~--------------~~g~g~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~ 426 (462)
+...|+|||++= ...=-...++++.+ + .+-.++- .++++.|++.|.+++ ++|.|++.+++.+
T Consensus 503 aAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr-~VvPEll-qgQ~~~tpe~La~~l-~lL~d~~~r~~~~ 579 (608)
T PRK01021 503 TALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGS-TIFPEFI-GGKKDFQPEEVAAAL-DILKTSQSKEKQK 579 (608)
T ss_pred HHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCC-Ccchhhc-CCcccCCHHHHHHHH-HHhcCHHHHHHHH
Confidence 999999998862 21111223344332 1 1111111 002578999999997 8888886665555
Q ss_pred HHHHHHHhHhhcCCCcHHH
Q 044266 427 DLKETSLNSVREGGQSDKT 445 (462)
Q Consensus 427 ~l~~~~~~~~~~~g~~~~~ 445 (462)
+--+++++...+|..+-++
T Consensus 580 ~~l~~lr~~Lg~~~~~~~~ 598 (608)
T PRK01021 580 DACRDLYQAMNESASTMKE 598 (608)
T ss_pred HHHHHHHHHhcCCCCCHHH
Confidence 5555555554445554333
No 85
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.86 E-value=9.9e-06 Score=83.26 Aligned_cols=88 Identities=15% Similarity=0.183 Sum_probs=56.9
Q ss_pred cCCceeeccc-Ccc---cccCC-CC-cccceec---cC-chhhhhhhhcCCceeccccccchhhhHHhHhhhheeeEEee
Q 044266 327 ATRRQMVGWA-PQQ---KVLTH-PS-IACFLSH---CG-WNSTMEGVSNGVPFLCWPYFADQFLNESYICDIWKVGLRFN 396 (462)
Q Consensus 327 ~~~v~~~~~~-pq~---~ll~~-~~-~~~~I~H---gG-~~sv~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~g~~~~ 396 (462)
.++|.+.++. +.. .++.+ ++ .++||.= =| --+++||+++|+|+|+--. ...+..|+.. .-|..++
T Consensus 618 ~g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT~~----GG~~EiV~dg-~tGfLVd 692 (784)
T TIGR02470 618 HGQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFATRF----GGPLEIIQDG-VSGFHID 692 (784)
T ss_pred CCeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEcCC----CCHHHHhcCC-CcEEEeC
Confidence 4678877764 432 34432 22 1226642 23 3499999999999998643 3455566653 6688885
Q ss_pred cCCCCccCHHHHHHHHHHHh----cCHHHHHH
Q 044266 397 KNKNGIITREEIMKKVDQVL----EDENFKAR 424 (462)
Q Consensus 397 ~~~~~~~~~~~l~~~i~~ll----~~~~~~~~ 424 (462)
. -++++++++|.+++ .|++.+++
T Consensus 693 p-----~D~eaLA~aL~~ll~kll~dp~~~~~ 719 (784)
T TIGR02470 693 P-----YHGEEAAEKIVDFFEKCDEDPSYWQK 719 (784)
T ss_pred C-----CCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 3 57899999998876 57765444
No 86
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.86 E-value=2.6e-06 Score=82.92 Aligned_cols=140 Identities=12% Similarity=0.144 Sum_probs=81.0
Q ss_pred EEEEeccCccccCHHHHHHHHHHHHhC--CCCEEEEEcCCCCCcccccCchhHHHH---h---cCCcee-ecccCcc---
Q 044266 272 VIYVAFGSFTVFDKEQFQELASGLELT--NRPFLWVVRPDITNDAIDAYPEGFQDR---V---ATRRQM-VGWAPQQ--- 339 (462)
Q Consensus 272 ~v~vs~Gs~~~~~~~~~~~~~~a~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~---~---~~~v~~-~~~~pq~--- 339 (462)
.+++..|+.. ..+....++++++.. +.++++..++.. ...+-+.+.+. . .+++.. .+++++.
T Consensus 202 ~~i~~~Grl~--~~Kg~~~li~a~~~l~~~~~l~i~g~g~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 275 (388)
T TIGR02149 202 PYILFVGRIT--RQKGVPHLLDAVHYIPKDVQVVLCAGAPD----TPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELV 275 (388)
T ss_pred eEEEEEcccc--cccCHHHHHHHHHHHhhcCcEEEEeCCCC----cHHHHHHHHHHHHHhccccCceEEecCCCCHHHHH
Confidence 5566678754 334455666666544 445555444321 11111111111 1 123543 4678754
Q ss_pred cccCCCCcccceec----cCchhhhhhhhcCCceeccccccchhhhHHhHhhhheeeEEeecCC-CCccCHHHHHHHHHH
Q 044266 340 KVLTHPSIACFLSH----CGWNSTMEGVSNGVPFLCWPYFADQFLNESYICDIWKVGLRFNKNK-NGIITREEIMKKVDQ 414 (462)
Q Consensus 340 ~ll~~~~~~~~I~H----gG~~sv~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~g~~~~~~~-~~~~~~~~l~~~i~~ 414 (462)
.++..+|+ +|.= |...+++||+++|+|+|+... ......+++. +.|..++.+. +..-..+++.++|.+
T Consensus 276 ~~~~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~~----~~~~e~i~~~-~~G~~~~~~~~~~~~~~~~l~~~i~~ 348 (388)
T TIGR02149 276 ELLSNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASAT----GGIPEVVVDG-ETGFLVPPDNSDADGFQAELAKAINI 348 (388)
T ss_pred HHHHhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeCC----CCHHHHhhCC-CceEEcCCCCCcccchHHHHHHHHHH
Confidence 57888887 7652 234577999999999998653 3455556653 6788875311 011123899999999
Q ss_pred HhcCHHHHHH
Q 044266 415 VLEDENFKAR 424 (462)
Q Consensus 415 ll~~~~~~~~ 424 (462)
+++|++.+++
T Consensus 349 l~~~~~~~~~ 358 (388)
T TIGR02149 349 LLADPELAKK 358 (388)
T ss_pred HHhCHHHHHH
Confidence 9998865443
No 87
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.85 E-value=1.1e-05 Score=75.38 Aligned_cols=316 Identities=14% Similarity=0.117 Sum_probs=182.7
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhC--CCEEEEEe-CCcchHHHHHhhcCCCCCCCCeEEEEcCCCCCCCCCCCCHHHHH
Q 044266 7 VLAFPYPAQGHVIPLLEISQCLVKH--GVKVTFLN-TDYNHKRVVNALGQNNYIGDQIKLVSIPDGMEPEGDRNDLGMLT 83 (462)
Q Consensus 7 Il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~-~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~ 83 (462)
.+.+=.-+.|-++...+|.++|.++ ++.|++-+ ++--.+.+.+.. ++.+...-+|-+
T Consensus 51 ~vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~------~~~v~h~YlP~D-------------- 110 (419)
T COG1519 51 LVWIHAASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALF------GDSVIHQYLPLD-------------- 110 (419)
T ss_pred eEEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHc------CCCeEEEecCcC--------------
Confidence 4444456889999999999999998 88888777 444455555542 123444444421
Q ss_pred HHHHHhccHHHHHHHHHHhhccCCCceEEEeCCCcc--hHHHHHHHcCCceEEEccchhHHHHHHHhHhhhhcCCCcCCC
Q 044266 84 KTMVRVMPEKLEELIENINRLENEKITCVVADGSMG--WVMEVAEKMKLRRAAFWPAAAGLLALSFSVQRFLDDGIVDDN 161 (462)
Q Consensus 84 ~~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 161 (462)
....++.+++. ++||++|.--... ....-+++.|+|.+.+.---+-
T Consensus 111 ------~~~~v~rFl~~------~~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaRLS~-------------------- 158 (419)
T COG1519 111 ------LPIAVRRFLRK------WRPKLLIIMETELWPNLINELKRRGIPLVLVNARLSD-------------------- 158 (419)
T ss_pred ------chHHHHHHHHh------cCCCEEEEEeccccHHHHHHHHHcCCCEEEEeeeech--------------------
Confidence 12235566666 9999977544333 5566688899999986421100
Q ss_pred CCCccccccccCCCCcccCcccchhhhhcCCCcchhhHHHHHHhhh-hhccccEEEEcCccccchhhhcc-CCCccccCc
Q 044266 162 GTPVKQQMIQLAPTMAAIHSSKLVWACIGDFNTQKIVFDFTIDNNE-TIKKAERLICNSTYDLEPGALDL-IPEFLPIGP 239 (462)
Q Consensus 162 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~ns~~~le~~~~~~-~p~v~~vGp 239 (462)
+.+. .+..+....+ ..++-+++++.+..+-+-- ... .++|..+|.
T Consensus 159 --------------------rS~~------------~y~k~~~~~~~~~~~i~li~aQse~D~~Rf-~~LGa~~v~v~GN 205 (419)
T COG1519 159 --------------------RSFA------------RYAKLKFLARLLFKNIDLILAQSEEDAQRF-RSLGAKPVVVTGN 205 (419)
T ss_pred --------------------hhhH------------HHHHHHHHHHHHHHhcceeeecCHHHHHHH-HhcCCcceEEecc
Confidence 0000 0111111112 2356678888776554422 222 345788887
Q ss_pred ccCCCCCCCCCCCCCCCCchhhHhhccCCC-CcEEEEeccCccccCHHHHHHHHHHHHhCCC--CEEEEEcCCCCCcccc
Q 044266 240 LLSSNRLGNSAGYFWPEDSTCLKWLDQQQQ-NSVIYVAFGSFTVFDKEQFQELASGLELTNR--PFLWVVRPDITNDAID 316 (462)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~--~~i~~~~~~~~~~~~~ 316 (462)
+-...... ...+.+...|-..-+. | .+.|..+| ...+.+.+-....++.+... ..||+-.-
T Consensus 206 lKfd~~~~------~~~~~~~~~~r~~l~~~r-~v~iaaST-H~GEeei~l~~~~~l~~~~~~~llIlVPRH-------- 269 (419)
T COG1519 206 LKFDIEPP------PQLAAELAALRRQLGGHR-PVWVAAST-HEGEEEIILDAHQALKKQFPNLLLILVPRH-------- 269 (419)
T ss_pred eeecCCCC------hhhHHHHHHHHHhcCCCC-ceEEEecC-CCchHHHHHHHHHHHHhhCCCceEEEecCC--------
Confidence 75543322 1122222222222122 3 45555555 33345555566666655443 34444222
Q ss_pred cCchhHH---HHhc------------------CCceeecccC-cccccCCCCc----ccceeccCchhhhhhhhcCCcee
Q 044266 317 AYPEGFQ---DRVA------------------TRRQMVGWAP-QQKVLTHPSI----ACFLSHCGWNSTMEGVSNGVPFL 370 (462)
Q Consensus 317 ~~~~~~~---~~~~------------------~~v~~~~~~p-q~~ll~~~~~----~~~I~HgG~~sv~eal~~GvP~l 370 (462)
|+.|. +-.. .+|.+.+-+- ...+++-+++ +-++-+||+| .+|.+++|+|+|
T Consensus 270 --pERf~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN-~LEpa~~~~pvi 346 (419)
T COG1519 270 --PERFKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHN-PLEPAAFGTPVI 346 (419)
T ss_pred --hhhHHHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcccCCCCCC-hhhHHHcCCCEE
Confidence 22211 1111 1233333222 1223333443 2256699998 689999999999
Q ss_pred ccccccchhhhHHhHhhhheeeEEeecCCCCccCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Q 044266 371 CWPYFADQFLNESYICDIWKVGLRFNKNKNGIITREEIMKKVDQVLEDENFKARALDLKETSLN 434 (462)
Q Consensus 371 ~~P~~~DQ~~na~~v~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~~~~ 434 (462)
.=|+..-|.+-++++.+. |.|+.++ +++.|.+++..++.|++.+++..+-+..+-+
T Consensus 347 ~Gp~~~Nf~ei~~~l~~~-ga~~~v~-------~~~~l~~~v~~l~~~~~~r~~~~~~~~~~v~ 402 (419)
T COG1519 347 FGPYTFNFSDIAERLLQA-GAGLQVE-------DADLLAKAVELLLADEDKREAYGRAGLEFLA 402 (419)
T ss_pred eCCccccHHHHHHHHHhc-CCeEEEC-------CHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 999999999999999996 9999994 4899999999999988766666555555544
No 88
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.84 E-value=3e-07 Score=86.29 Aligned_cols=148 Identities=16% Similarity=0.150 Sum_probs=86.3
Q ss_pred CcEEEEeccCccccCHHHHHHHHHHHHhCCCC-EEEEEcCCCCCcccccCchhHHHHhcC--CceeecccCcccccCCCC
Q 044266 270 NSVIYVAFGSFTVFDKEQFQELASGLELTNRP-FLWVVRPDITNDAIDAYPEGFQDRVAT--RRQMVGWAPQQKVLTHPS 346 (462)
Q Consensus 270 ~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~pq~~ll~~~~ 346 (462)
+++|.+--||....-...+..++++.+....+ .++.+.... . . +.+.+.... .+.+.+ .-.++|..+|
T Consensus 167 ~~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a~---~---~-~~i~~~~~~~~~~~~~~--~~~~~m~~aD 237 (347)
T PRK14089 167 EGTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSFF---K---G-KDLKEIYGDISEFEISY--DTHKALLEAE 237 (347)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCCC---c---H-HHHHHHHhcCCCcEEec--cHHHHHHhhh
Confidence 35899999998553334455444444332221 222222210 0 0 222222211 222332 2246888888
Q ss_pred cccceeccCchhhhhhhhcCCceecccc--ccchhhhHHhHh---hhheeeEEeec---------C-CCCccCHHHHHHH
Q 044266 347 IACFLSHCGWNSTMEGVSNGVPFLCWPY--FADQFLNESYIC---DIWKVGLRFNK---------N-KNGIITREEIMKK 411 (462)
Q Consensus 347 ~~~~I~HgG~~sv~eal~~GvP~l~~P~--~~DQ~~na~~v~---~~~g~g~~~~~---------~-~~~~~~~~~l~~~ 411 (462)
+ +|+-+|..|+ |+..+|+|||+ ++ ..=|..||+++. . .|++-.+-. + .+++.|++.|.++
T Consensus 238 l--al~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~lv~~~~-igL~Nii~~~~~~~~vvPEllQ~~~t~~~la~~ 312 (347)
T PRK14089 238 F--AFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMFVKLKH-IGLANIFFDFLGKEPLHPELLQEFVTVENLLKA 312 (347)
T ss_pred H--HHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHHHcCCe-eehHHHhcCCCcccccCchhhcccCCHHHHHHH
Confidence 7 9999999999 99999999988 54 346888999988 4 355543310 0 1467899999999
Q ss_pred HHHHhcCHHHHHHHHHHHHHH
Q 044266 412 VDQVLEDENFKARALDLKETS 432 (462)
Q Consensus 412 i~~ll~~~~~~~~a~~l~~~~ 432 (462)
+.+ ....++++...++.+.+
T Consensus 313 i~~-~~~~~~~~~~~~l~~~l 332 (347)
T PRK14089 313 YKE-MDREKFFKKSKELREYL 332 (347)
T ss_pred HHH-HHHHHHHHHHHHHHHHh
Confidence 988 22234444444444444
No 89
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.84 E-value=9.1e-07 Score=84.96 Aligned_cols=92 Identities=14% Similarity=0.229 Sum_probs=63.5
Q ss_pred hcCCceeecccCcc---cccCCCCcccceec----cCchhhhhhhhcCCceeccccccchhhhHHhHhhhheeeEEeecC
Q 044266 326 VATRRQMVGWAPQQ---KVLTHPSIACFLSH----CGWNSTMEGVSNGVPFLCWPYFADQFLNESYICDIWKVGLRFNKN 398 (462)
Q Consensus 326 ~~~~v~~~~~~pq~---~ll~~~~~~~~I~H----gG~~sv~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~g~~~~~~ 398 (462)
..+++.+.+++|+. .++..+++ +|.- |..++++||+++|+|+|+.... .....+.+ .|..+.
T Consensus 251 ~~~~v~~~g~~~~~~~~~~~~~~d~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~----~~~e~~~~---~~~~~~-- 319 (365)
T cd03809 251 LGDRVRFLGYVSDEELAALYRGARA--FVFPSLYEGFGLPVLEAMACGTPVIASNIS----SLPEVAGD---AALYFD-- 319 (365)
T ss_pred CCCeEEECCCCChhHHHHHHhhhhh--hcccchhccCCCCHHHHhcCCCcEEecCCC----CccceecC---ceeeeC--
Confidence 45788899999875 47878777 5533 3356899999999999986442 12222222 344442
Q ss_pred CCCccCHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 044266 399 KNGIITREEIMKKVDQVLEDENFKARALDLKET 431 (462)
Q Consensus 399 ~~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~ 431 (462)
.-+.+++.++|.++++|++.+.+..+-+..
T Consensus 320 ---~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~ 349 (365)
T cd03809 320 ---PLDPEALAAAIERLLEDPALREELRERGLA 349 (365)
T ss_pred ---CCCHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 248999999999999999876665554443
No 90
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.81 E-value=1.2e-06 Score=85.20 Aligned_cols=73 Identities=14% Similarity=0.197 Sum_probs=51.7
Q ss_pred eecccCcccccCCCCcccceecc----CchhhhhhhhcCCceeccccccchhhhHHhHhhhheeeEEeecCCCCccCHHH
Q 044266 332 MVGWAPQQKVLTHPSIACFLSHC----GWNSTMEGVSNGVPFLCWPYFADQFLNESYICDIWKVGLRFNKNKNGIITREE 407 (462)
Q Consensus 332 ~~~~~pq~~ll~~~~~~~~I~Hg----G~~sv~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~g~~~~~~~~~~~~~~~ 407 (462)
+.++.+..+++...|+ ||.-+ =..+++||+++|+|+|+.-..+ + ..+... +-|... -+.++
T Consensus 288 f~G~~~~~~~~~~~Dv--Fv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~----~-~~v~~~-~ng~~~-------~~~~~ 352 (462)
T PLN02846 288 YPGRDHADPLFHDYKV--FLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-EFFKQF-PNCRTY-------DDGKG 352 (462)
T ss_pred ECCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCcEEEecCCC----c-ceeecC-CceEec-------CCHHH
Confidence 4466666678888877 88764 3568999999999999985432 2 333332 445444 26889
Q ss_pred HHHHHHHHhcCH
Q 044266 408 IMKKVDQVLEDE 419 (462)
Q Consensus 408 l~~~i~~ll~~~ 419 (462)
+.++|.++|.++
T Consensus 353 ~a~ai~~~l~~~ 364 (462)
T PLN02846 353 FVRATLKALAEE 364 (462)
T ss_pred HHHHHHHHHccC
Confidence 999999999854
No 91
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.76 E-value=3.5e-06 Score=80.87 Aligned_cols=92 Identities=13% Similarity=0.133 Sum_probs=62.7
Q ss_pred cCCceeecccCc-ccccCCCCcccceeccC----chhhhhhhhcCCceeccccccchhhhHHhHhhhheeeEEeecCCCC
Q 044266 327 ATRRQMVGWAPQ-QKVLTHPSIACFLSHCG----WNSTMEGVSNGVPFLCWPYFADQFLNESYICDIWKVGLRFNKNKNG 401 (462)
Q Consensus 327 ~~~v~~~~~~pq-~~ll~~~~~~~~I~HgG----~~sv~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~g~~~~~~~~~ 401 (462)
.+|+.+.++..+ ..+|..+++ +|.-.. .++++||+.+|+|+|+. |...+...+++ .|.....
T Consensus 244 ~~~v~~~g~~~~~~~~~~~ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i~~-~g~~~~~------ 310 (360)
T cd04951 244 SNRVKLLGLRDDIAAYYNAADL--FVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVVGD-SGLIVPI------ 310 (360)
T ss_pred CCcEEEecccccHHHHHHhhce--EEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEecC-CceEeCC------
Confidence 467888887765 468888887 665432 57899999999999975 44555555555 2544332
Q ss_pred ccCHHHHHHHHHHHh-cCHHHHHHHHHHHHHH
Q 044266 402 IITREEIMKKVDQVL-EDENFKARALDLKETS 432 (462)
Q Consensus 402 ~~~~~~l~~~i~~ll-~~~~~~~~a~~l~~~~ 432 (462)
-+.+++.++|.+++ .++.+++.....++.+
T Consensus 311 -~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~ 341 (360)
T cd04951 311 -SDPEALANKIDEILKMSGEERDIIGARRERI 341 (360)
T ss_pred -CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 58899999999998 4556655444433333
No 92
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=98.75 E-value=5.1e-06 Score=80.33 Aligned_cols=110 Identities=16% Similarity=0.182 Sum_probs=67.4
Q ss_pred cCCceeeccc--Ccc---cccCCCCcccceecc---C-chhhhhhhhcCCceeccccccchhhhHHhHhhhheeeEEeec
Q 044266 327 ATRRQMVGWA--PQQ---KVLTHPSIACFLSHC---G-WNSTMEGVSNGVPFLCWPYFADQFLNESYICDIWKVGLRFNK 397 (462)
Q Consensus 327 ~~~v~~~~~~--pq~---~ll~~~~~~~~I~Hg---G-~~sv~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~g~~~~~ 397 (462)
.+++.+.++. ++. .+++.+++ |+.-. | ..+++||+++|+|+|+.... .....+... ..|...+
T Consensus 251 ~~~v~~~~~~~~~~~~~~~~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~----~~~~~i~~~-~~g~~~~- 322 (372)
T cd03792 251 DPDIHVLTLPPVSDLEVNALQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPVG----GIPLQIEDG-ETGFLVD- 322 (372)
T ss_pred CCCeEEEecCCCCHHHHHHHHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCCC----CchhhcccC-CceEEeC-
Confidence 4567777776 432 57888777 77543 2 34999999999999987543 233345542 5566552
Q ss_pred CCCCccCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhHhhcCCCcHHHHHHHHHHH
Q 044266 398 NKNGIITREEIMKKVDQVLEDENFKARALDLKETSLNSVREGGQSDKTFKNFVQWI 453 (462)
Q Consensus 398 ~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 453 (462)
+.++++.+|.++++|++.++...+-+.+.. .+.-+.....+++++.+
T Consensus 323 ------~~~~~a~~i~~ll~~~~~~~~~~~~a~~~~---~~~~s~~~~~~~~~~~~ 369 (372)
T cd03792 323 ------TVEEAAVRILYLLRDPELRRKMGANAREHV---RENFLITRHLKDYLYLI 369 (372)
T ss_pred ------CcHHHHHHHHHHHcCHHHHHHHHHHHHHHH---HHHcCHHHHHHHHHHHH
Confidence 456788899999998866554333332221 11234444555555443
No 93
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.73 E-value=2.8e-06 Score=80.36 Aligned_cols=213 Identities=15% Similarity=0.155 Sum_probs=116.5
Q ss_pred cccEEEEcCccccchhhhccCCCccccC-cccCCCCCCCCCCCCCCCCchhhHhhccCCCCcEEEEeccCccccCHHHHH
Q 044266 211 KAERLICNSTYDLEPGALDLIPEFLPIG-PLLSSNRLGNSAGYFWPEDSTCLKWLDQQQQNSVIYVAFGSFTVFDKEQFQ 289 (462)
Q Consensus 211 ~~~~~l~ns~~~le~~~~~~~p~v~~vG-p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~ 289 (462)
.+|.+++--+++-++- ....-++.||| |+....... ..+....+.+ -.+++++|.+--||....-...+.
T Consensus 133 ~~D~ll~ifPFE~~~y-~~~g~~~~~VGHPl~d~~~~~-------~~~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP 203 (373)
T PF02684_consen 133 YVDHLLVIFPFEPEFY-KKHGVPVTYVGHPLLDEVKPE-------PDRAEAREKL-LDPDKPIIALLPGSRKSEIKRLLP 203 (373)
T ss_pred HHhheeECCcccHHHH-hccCCCeEEECCcchhhhccC-------CCHHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHH
Confidence 4466666555544432 33445799999 444433221 1222222333 224567999999997543333334
Q ss_pred HHHHHH---HhC--CCCEEEEEcCCCCCcccccCchh-HHH---HhcCCceeeccc-CcccccCCCCcccceeccCchhh
Q 044266 290 ELASGL---ELT--NRPFLWVVRPDITNDAIDAYPEG-FQD---RVATRRQMVGWA-PQQKVLTHPSIACFLSHCGWNST 359 (462)
Q Consensus 290 ~~~~a~---~~~--~~~~i~~~~~~~~~~~~~~~~~~-~~~---~~~~~v~~~~~~-pq~~ll~~~~~~~~I~HgG~~sv 359 (462)
.++++. .+. +.++++...+. ..+. +.+ ....++.+.-.. .-.++|..+++ .+.-.|. .+
T Consensus 204 ~~l~aa~~l~~~~p~l~fvvp~a~~--------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~m~~ad~--al~~SGT-aT 272 (373)
T PF02684_consen 204 IFLEAAKLLKKQRPDLQFVVPVAPE--------VHEELIEEILAEYPPDVSIVIIEGESYDAMAAADA--ALAASGT-AT 272 (373)
T ss_pred HHHHHHHHHHHhCCCeEEEEecCCH--------HHHHHHHHHHHhhCCCCeEEEcCCchHHHHHhCcc--hhhcCCH-HH
Confidence 444443 333 33455444332 1111 111 112333332222 23468878777 6666654 57
Q ss_pred hhhhhcCCceeccc-cccchhhhHHhHhhhheeeEEeec--------CC--CCccCHHHHHHHHHHHhcCHHHHHHHHHH
Q 044266 360 MEGVSNGVPFLCWP-YFADQFLNESYICDIWKVGLRFNK--------NK--NGIITREEIMKKVDQVLEDENFKARALDL 428 (462)
Q Consensus 360 ~eal~~GvP~l~~P-~~~DQ~~na~~v~~~~g~g~~~~~--------~~--~~~~~~~~l~~~i~~ll~~~~~~~~a~~l 428 (462)
+|+..+|+|||++= ...=....|+++.+ ... +.+.. -| ++..|++.+.+++.++|+|++.++..+..
T Consensus 273 LE~Al~g~P~Vv~Yk~~~lt~~iak~lvk-~~~-isL~Niia~~~v~PEliQ~~~~~~~i~~~~~~ll~~~~~~~~~~~~ 350 (373)
T PF02684_consen 273 LEAALLGVPMVVAYKVSPLTYFIAKRLVK-VKY-ISLPNIIAGREVVPELIQEDATPENIAAELLELLENPEKRKKQKEL 350 (373)
T ss_pred HHHHHhCCCEEEEEcCcHHHHHHHHHhhc-CCE-eechhhhcCCCcchhhhcccCCHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 89999999998872 22222334444433 122 11110 01 46789999999999999999777777777
Q ss_pred HHHHHhHhhcCCCcHHH
Q 044266 429 KETSLNSVREGGQSDKT 445 (462)
Q Consensus 429 ~~~~~~~~~~~g~~~~~ 445 (462)
.+.+.+..+.+.++.++
T Consensus 351 ~~~~~~~~~~~~~~~~~ 367 (373)
T PF02684_consen 351 FREIRQLLGPGASSRAA 367 (373)
T ss_pred HHHHHHhhhhccCCHHH
Confidence 77777766666666443
No 94
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=98.71 E-value=1.3e-05 Score=78.25 Aligned_cols=112 Identities=14% Similarity=0.168 Sum_probs=72.8
Q ss_pred cCCceeecccCcc---cccCCCCcccceec---------cCc-hhhhhhhhcCCceeccccccchhhhHHhHhhhheeeE
Q 044266 327 ATRRQMVGWAPQQ---KVLTHPSIACFLSH---------CGW-NSTMEGVSNGVPFLCWPYFADQFLNESYICDIWKVGL 393 (462)
Q Consensus 327 ~~~v~~~~~~pq~---~ll~~~~~~~~I~H---------gG~-~sv~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~g~ 393 (462)
.+++.+.+|+|+. +++..+|+ +|.- -|. ++++||+++|+|+|+.... .....++.. ..|.
T Consensus 278 ~~~V~~~G~~~~~el~~~l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~----g~~E~v~~~-~~G~ 350 (406)
T PRK15427 278 EDVVEMPGFKPSHEVKAMLDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHS----GIPELVEAD-KSGW 350 (406)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCC----CchhhhcCC-CceE
Confidence 4778999999975 47888887 6642 244 5789999999999987443 334455552 5777
Q ss_pred EeecCCCCccCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHhHhhcCCCcHHHHHHHHHHH
Q 044266 394 RFNKNKNGIITREEIMKKVDQVLE-DENFKARALDLKETSLNSVREGGQSDKTFKNFVQWI 453 (462)
Q Consensus 394 ~~~~~~~~~~~~~~l~~~i~~ll~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 453 (462)
.++ .-+.++++++|.++++ |++.+++ +++..++.+.+.-+.....+++.+.+
T Consensus 351 lv~-----~~d~~~la~ai~~l~~~d~~~~~~---~~~~ar~~v~~~f~~~~~~~~l~~~~ 403 (406)
T PRK15427 351 LVP-----ENDAQALAQRLAAFSQLDTDELAP---VVKRAREKVETDFNQQVINRELASLL 403 (406)
T ss_pred EeC-----CCCHHHHHHHHHHHHhCCHHHHHH---HHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 774 2589999999999999 8864332 22222222222334444555555443
No 95
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.68 E-value=2.8e-06 Score=82.93 Aligned_cols=85 Identities=12% Similarity=0.112 Sum_probs=61.6
Q ss_pred cCCceeecccCcc-cccCCCCcccce--ec--cCch-hhhhhhhcCCceeccccccchhhhHHhHhhhheeeEEeecCCC
Q 044266 327 ATRRQMVGWAPQQ-KVLTHPSIACFL--SH--CGWN-STMEGVSNGVPFLCWPYFADQFLNESYICDIWKVGLRFNKNKN 400 (462)
Q Consensus 327 ~~~v~~~~~~pq~-~ll~~~~~~~~I--~H--gG~~-sv~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~g~~~~~~~~ 400 (462)
.++|.+.+++++. .+++.+++ +| ++ .|.+ .++||+++|+|+|+.+...+.. .+. -|.|..+.
T Consensus 279 ~~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i-----~~~-~~~g~lv~---- 346 (397)
T TIGR03087 279 LPGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGI-----DAL-PGAELLVA---- 346 (397)
T ss_pred CCCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCcccccc-----ccc-CCcceEeC----
Confidence 4678899999864 68888888 66 32 4543 6999999999999987643321 122 26676663
Q ss_pred CccCHHHHHHHHHHHhcCHHHHHHH
Q 044266 401 GIITREEIMKKVDQVLEDENFKARA 425 (462)
Q Consensus 401 ~~~~~~~l~~~i~~ll~~~~~~~~a 425 (462)
-++++++++|.++++|++.+++.
T Consensus 347 --~~~~~la~ai~~ll~~~~~~~~~ 369 (397)
T TIGR03087 347 --ADPADFAAAILALLANPAEREEL 369 (397)
T ss_pred --CCHHHHHHHHHHHHcCHHHHHHH
Confidence 48999999999999998654443
No 96
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.66 E-value=5.2e-06 Score=79.53 Aligned_cols=132 Identities=19% Similarity=0.240 Sum_probs=80.9
Q ss_pred CcEEEEeccCcc---ccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCcccccCchhHHHHh--cCCceeecccCcc---cc
Q 044266 270 NSVIYVAFGSFT---VFDKEQFQELASGLELTNRPFLWVVRPDITNDAIDAYPEGFQDRV--ATRRQMVGWAPQQ---KV 341 (462)
Q Consensus 270 ~~~v~vs~Gs~~---~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~pq~---~l 341 (462)
++.+++++=... ....+.+..+++++...+.++++..... +... ..+...+.+.. .+|+.+.+.++.. .+
T Consensus 201 ~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~-~p~~-~~i~~~i~~~~~~~~~v~l~~~l~~~~~l~L 278 (365)
T TIGR03568 201 KPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNA-DAGS-RIINEAIEEYVNEHPNFRLFKSLGQERYLSL 278 (365)
T ss_pred CCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCC-CCCc-hHHHHHHHHHhcCCCCEEEECCCChHHHHHH
Confidence 458888885432 2345678999999977776666654322 0000 00111111111 3678888776654 68
Q ss_pred cCCCCcccceeccCchhhhhhhhcCCceeccccccchhhhHHhHhhhheeeEE-eecCCCCccCHHHHHHHHHHHhcCHH
Q 044266 342 LTHPSIACFLSHCGWNSTMEGVSNGVPFLCWPYFADQFLNESYICDIWKVGLR-FNKNKNGIITREEIMKKVDQVLEDEN 420 (462)
Q Consensus 342 l~~~~~~~~I~HgG~~sv~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~g~~-~~~~~~~~~~~~~l~~~i~~ll~~~~ 420 (462)
++++++ +||-++.|- .||...|+|+|.+- +-+ ...+. |-.+. +. .++++|.+++++++ ++.
T Consensus 279 l~~a~~--vitdSSggi-~EA~~lg~Pvv~l~---~R~----e~~~~-g~nvl~vg------~~~~~I~~a~~~~~-~~~ 340 (365)
T TIGR03568 279 LKNADA--VIGNSSSGI-IEAPSFGVPTINIG---TRQ----KGRLR-ADSVIDVD------PDKEEIVKAIEKLL-DPA 340 (365)
T ss_pred HHhCCE--EEEcChhHH-HhhhhcCCCEEeec---CCc----hhhhh-cCeEEEeC------CCHHHHHHHHHHHh-ChH
Confidence 889888 998886555 89999999999773 211 11121 43333 32 58899999999965 444
Q ss_pred H
Q 044266 421 F 421 (462)
Q Consensus 421 ~ 421 (462)
+
T Consensus 341 ~ 341 (365)
T TIGR03568 341 F 341 (365)
T ss_pred H
Confidence 3
No 97
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=98.65 E-value=1.6e-06 Score=83.05 Aligned_cols=134 Identities=11% Similarity=0.195 Sum_probs=89.7
Q ss_pred EEEeccCccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCcccccCchhHHHHhcCCceeecccCcc---cccCCCCccc
Q 044266 273 IYVAFGSFTVFDKEQFQELASGLELTNRPFLWVVRPDITNDAIDAYPEGFQDRVATRRQMVGWAPQQ---KVLTHPSIAC 349 (462)
Q Consensus 273 v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~---~ll~~~~~~~ 349 (462)
.++..|+.. ..+....++++++..+.+++++..+. ..+.+.+...+||.+.+++|+. .+++.+++
T Consensus 197 ~il~~G~~~--~~K~~~~li~a~~~~~~~l~ivG~g~--------~~~~l~~~~~~~V~~~g~~~~~~~~~~~~~ad~-- 264 (351)
T cd03804 197 YYLSVGRLV--PYKRIDLAIEAFNKLGKRLVVIGDGP--------ELDRLRAKAGPNVTFLGRVSDEELRDLYARARA-- 264 (351)
T ss_pred EEEEEEcCc--cccChHHHHHHHHHCCCcEEEEECCh--------hHHHHHhhcCCCEEEecCCCHHHHHHHHHhCCE--
Confidence 345567654 33446678888877777766654432 1123333457899999999984 57888887
Q ss_pred ce--eccCc-hhhhhhhhcCCceeccccccchhhhHHhHhhhheeeEEeecCCCCccCHHHHHHHHHHHhcCH-HHHHHH
Q 044266 350 FL--SHCGW-NSTMEGVSNGVPFLCWPYFADQFLNESYICDIWKVGLRFNKNKNGIITREEIMKKVDQVLEDE-NFKARA 425 (462)
Q Consensus 350 ~I--~HgG~-~sv~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ll~~~-~~~~~a 425 (462)
+| +.-|. .+++||+++|+|+|+....+ ....+++. +.|..++. -++++++++|.++++|+ ..++++
T Consensus 265 ~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i~~~-~~G~~~~~-----~~~~~la~~i~~l~~~~~~~~~~~ 334 (351)
T cd03804 265 FLFPAEEDFGIVPVEAMASGTPVIAYGKGG----ALETVIDG-VTGILFEE-----QTVESLAAAVERFEKNEDFDPQAI 334 (351)
T ss_pred EEECCcCCCCchHHHHHHcCCCEEEeCCCC----CcceeeCC-CCEEEeCC-----CCHHHHHHHHHHHHhCcccCHHHH
Confidence 55 33444 36789999999999985433 33445553 67887743 57899999999999988 444444
Q ss_pred HHH
Q 044266 426 LDL 428 (462)
Q Consensus 426 ~~l 428 (462)
++-
T Consensus 335 ~~~ 337 (351)
T cd03804 335 RAH 337 (351)
T ss_pred HHH
Confidence 443
No 98
>PLN02949 transferase, transferring glycosyl groups
Probab=98.64 E-value=4.6e-05 Score=75.24 Aligned_cols=114 Identities=17% Similarity=0.108 Sum_probs=67.8
Q ss_pred cCCceeecccCcc---cccCCCCccccee---ccCch-hhhhhhhcCCceeccccccchhhhHHhHhh-hhe-eeEEeec
Q 044266 327 ATRRQMVGWAPQQ---KVLTHPSIACFLS---HCGWN-STMEGVSNGVPFLCWPYFADQFLNESYICD-IWK-VGLRFNK 397 (462)
Q Consensus 327 ~~~v~~~~~~pq~---~ll~~~~~~~~I~---HgG~~-sv~eal~~GvP~l~~P~~~DQ~~na~~v~~-~~g-~g~~~~~ 397 (462)
.++|.+.+++|+. .+|+.+++ +|+ +-|.| ++.||+++|+|+|+....+--. ..+.+ .-| .|...
T Consensus 334 ~~~V~f~g~v~~~el~~ll~~a~~--~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~---eIV~~~~~g~tG~l~-- 406 (463)
T PLN02949 334 DGDVEFHKNVSYRDLVRLLGGAVA--GLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKM---DIVLDEDGQQTGFLA-- 406 (463)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCcE--EEeCCccCCCChHHHHHHHcCCcEEEeCCCCCcc---eeeecCCCCcccccC--
Confidence 5789999999865 47878777 663 23444 7999999999999986543100 01111 001 23222
Q ss_pred CCCCccCHHHHHHHHHHHhcC-HH----HHHHHHHHHHHHHhHhhcCCCcHHHHHHHHHHHHhhh
Q 044266 398 NKNGIITREEIMKKVDQVLED-EN----FKARALDLKETSLNSVREGGQSDKTFKNFVQWIKAEA 457 (462)
Q Consensus 398 ~~~~~~~~~~l~~~i~~ll~~-~~----~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 457 (462)
-++++++++|.+++++ ++ +.+++++..++|... ...+.+.+.++.+..++
T Consensus 407 -----~~~~~la~ai~~ll~~~~~~r~~m~~~ar~~~~~FS~e-----~~~~~~~~~i~~l~~~~ 461 (463)
T PLN02949 407 -----TTVEEYADAILEVLRMRETERLEIAAAARKRANRFSEQ-----RFNEDFKDAIRPILNSA 461 (463)
T ss_pred -----CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCHH-----HHHHHHHHHHHHHHhhh
Confidence 2789999999999984 43 344444433333221 22445555555555443
No 99
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=98.62 E-value=1.9e-05 Score=77.40 Aligned_cols=80 Identities=19% Similarity=0.117 Sum_probs=55.6
Q ss_pred cCCceeecccCcc---cccCCCCcccceecc---C-chhhhhhhhcCCceeccccccchhhhHHhHh---hhheeeEEee
Q 044266 327 ATRRQMVGWAPQQ---KVLTHPSIACFLSHC---G-WNSTMEGVSNGVPFLCWPYFADQFLNESYIC---DIWKVGLRFN 396 (462)
Q Consensus 327 ~~~v~~~~~~pq~---~ll~~~~~~~~I~Hg---G-~~sv~eal~~GvP~l~~P~~~DQ~~na~~v~---~~~g~g~~~~ 396 (462)
.++|.+.+++|+. .+|..+++ +|+-. | .-++.|||++|+|+|+.-..+.- ...++ .. ..|...
T Consensus 304 ~~~V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~---~~iv~~~~~g-~~G~l~- 376 (419)
T cd03806 304 EDKVEFVVNAPFEELLEELSTASI--GLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPL---LDIVVPWDGG-PTGFLA- 376 (419)
T ss_pred CCeEEEecCCCHHHHHHHHHhCeE--EEECCccCCcccHHHHHHHcCCcEEEEcCCCCc---hheeeccCCC-CceEEe-
Confidence 4789999999875 58888777 66421 2 24889999999999986543211 11222 22 566654
Q ss_pred cCCCCccCHHHHHHHHHHHhcCH
Q 044266 397 KNKNGIITREEIMKKVDQVLEDE 419 (462)
Q Consensus 397 ~~~~~~~~~~~l~~~i~~ll~~~ 419 (462)
-++++++++|.++++++
T Consensus 377 ------~d~~~la~ai~~ll~~~ 393 (419)
T cd03806 377 ------STAEEYAEAIEKILSLS 393 (419)
T ss_pred ------CCHHHHHHHHHHHHhCC
Confidence 28999999999999865
No 100
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.55 E-value=5.3e-07 Score=85.42 Aligned_cols=138 Identities=14% Similarity=0.181 Sum_probs=80.1
Q ss_pred CCCcEEEEeccCccccC-H---HHHHHHHHHHHhC-CCCEEEEEcCCCCCcccccCchhHHHHhc--CCceeecccCcc-
Q 044266 268 QQNSVIYVAFGSFTVFD-K---EQFQELASGLELT-NRPFLWVVRPDITNDAIDAYPEGFQDRVA--TRRQMVGWAPQQ- 339 (462)
Q Consensus 268 ~~~~~v~vs~Gs~~~~~-~---~~~~~~~~a~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~pq~- 339 (462)
.+++.+++++=...... + ..+..+++++.+. +.++||.+.+. + .-...+.+... +|+++..-+++.
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~----p--~~~~~i~~~l~~~~~v~~~~~l~~~~ 251 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNN----P--RGSDIIIEKLKKYDNVRLIEPLGYEE 251 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-----H--HHHHHHHHHHTT-TTEEEE----HHH
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCC----c--hHHHHHHHHhcccCCEEEECCCCHHH
Confidence 45779999995544444 3 3455667777555 67888888754 0 01111222221 488888777654
Q ss_pred --cccCCCCcccceeccCchhhh-hhhhcCCceeccccccchhhhHHhHhhhheeeEEeecCCCCccCHHHHHHHHHHHh
Q 044266 340 --KVLTHPSIACFLSHCGWNSTM-EGVSNGVPFLCWPYFADQFLNESYICDIWKVGLRFNKNKNGIITREEIMKKVDQVL 416 (462)
Q Consensus 340 --~ll~~~~~~~~I~HgG~~sv~-eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ll 416 (462)
.+|+++++ +|+..| ++. ||.+.|+|.|.+=..++.+ .-+. .|..+.+. .++++|.++|++++
T Consensus 252 ~l~ll~~a~~--vvgdSs--GI~eEa~~lg~P~v~iR~~geRq---e~r~--~~~nvlv~------~~~~~I~~ai~~~l 316 (346)
T PF02350_consen 252 YLSLLKNADL--VVGDSS--GIQEEAPSLGKPVVNIRDSGERQ---EGRE--RGSNVLVG------TDPEAIIQAIEKAL 316 (346)
T ss_dssp HHHHHHHESE--EEESSH--HHHHHGGGGT--EEECSSS-S-H---HHHH--TTSEEEET------SSHHHHHHHHHHHH
T ss_pred HHHHHhcceE--EEEcCc--cHHHHHHHhCCeEEEecCCCCCH---HHHh--hcceEEeC------CCHHHHHHHHHHHH
Confidence 68889888 999999 555 9999999999992222222 2222 25555553 68999999999999
Q ss_pred cCHHHHHHHH
Q 044266 417 EDENFKARAL 426 (462)
Q Consensus 417 ~~~~~~~~a~ 426 (462)
.++...++..
T Consensus 317 ~~~~~~~~~~ 326 (346)
T PF02350_consen 317 SDKDFYRKLK 326 (346)
T ss_dssp H-HHHHHHHH
T ss_pred hChHHHHhhc
Confidence 8754444433
No 101
>PRK00654 glgA glycogen synthase; Provisional
Probab=98.52 E-value=6.4e-05 Score=74.89 Aligned_cols=131 Identities=11% Similarity=0.216 Sum_probs=73.4
Q ss_pred cEEEEeccCccccCHHHHHHHHHHHH---hCCCCEEEEEcCCCCCcccccCchh---HHHHhcCCcee-ecccCcc--cc
Q 044266 271 SVIYVAFGSFTVFDKEQFQELASGLE---LTNRPFLWVVRPDITNDAIDAYPEG---FQDRVATRRQM-VGWAPQQ--KV 341 (462)
Q Consensus 271 ~~v~vs~Gs~~~~~~~~~~~~~~a~~---~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~-~~~~pq~--~l 341 (462)
..+++..|... +.+.+..+++++. +.+.++++.-.+. ....+. +.++.+.++.+ .++-.+. .+
T Consensus 282 ~~~i~~vGRl~--~~KG~~~li~a~~~l~~~~~~lvivG~g~------~~~~~~l~~l~~~~~~~v~~~~g~~~~~~~~~ 353 (466)
T PRK00654 282 APLFAMVSRLT--EQKGLDLVLEALPELLEQGGQLVLLGTGD------PELEEAFRALAARYPGKVGVQIGYDEALAHRI 353 (466)
T ss_pred CcEEEEeeccc--cccChHHHHHHHHHHHhcCCEEEEEecCc------HHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHH
Confidence 35666778764 2333444455543 2356666653321 001111 22234556553 4663222 47
Q ss_pred cCCCCccccee---ccCch-hhhhhhhcCCceecccccc--chhhhHHhHhhhheeeEEeecCCCCccCHHHHHHHHHHH
Q 044266 342 LTHPSIACFLS---HCGWN-STMEGVSNGVPFLCWPYFA--DQFLNESYICDIWKVGLRFNKNKNGIITREEIMKKVDQV 415 (462)
Q Consensus 342 l~~~~~~~~I~---HgG~~-sv~eal~~GvP~l~~P~~~--DQ~~na~~v~~~~g~g~~~~~~~~~~~~~~~l~~~i~~l 415 (462)
++.+|+ +|. +-|.| +.+||+.+|+|.|+....+ |...+...-.+. +.|..++ .-+++++.++|.++
T Consensus 354 ~~~aDv--~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~-~~G~lv~-----~~d~~~la~~i~~~ 425 (466)
T PRK00654 354 YAGADM--FLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGE-ATGFVFD-----DFNAEDLLRALRRA 425 (466)
T ss_pred HhhCCE--EEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCC-CceEEeC-----CCCHHHHHHHHHHH
Confidence 888887 774 33554 8899999999999875432 221111011222 6788774 35889999999998
Q ss_pred hc
Q 044266 416 LE 417 (462)
Q Consensus 416 l~ 417 (462)
++
T Consensus 426 l~ 427 (466)
T PRK00654 426 LE 427 (466)
T ss_pred HH
Confidence 86
No 102
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.51 E-value=0.00015 Score=74.62 Aligned_cols=93 Identities=19% Similarity=0.192 Sum_probs=62.8
Q ss_pred cCCceeecccCcc-cccCCCCccccee---ccC-chhhhhhhhcCCceeccccccchhhhHHhHhhhheeeEEeecCCCC
Q 044266 327 ATRRQMVGWAPQQ-KVLTHPSIACFLS---HCG-WNSTMEGVSNGVPFLCWPYFADQFLNESYICDIWKVGLRFNKNKNG 401 (462)
Q Consensus 327 ~~~v~~~~~~pq~-~ll~~~~~~~~I~---HgG-~~sv~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~g~~~~~~~~~ 401 (462)
.++|++.+|.++. .+|..+++ +|. +.| -++++||+.+|+|+|+.... .....|.+. ..|..++. .
T Consensus 573 ~~~V~flG~~~dv~~ll~aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~g----G~~EiV~dg-~~GlLv~~---~ 642 (694)
T PRK15179 573 GERILFTGLSRRVGYWLTQFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLAG----GAGEAVQEG-VTGLTLPA---D 642 (694)
T ss_pred CCcEEEcCCcchHHHHHHhcCE--EEeccccccchHHHHHHHHcCCeEEEECCC----ChHHHccCC-CCEEEeCC---C
Confidence 4778888998753 68888777 664 455 56899999999999997542 344455552 46888763 4
Q ss_pred ccCHHHHHHHHHHHh----cCHHHHHHHHHHH
Q 044266 402 IITREEIMKKVDQVL----EDENFKARALDLK 429 (462)
Q Consensus 402 ~~~~~~l~~~i~~ll----~~~~~~~~a~~l~ 429 (462)
+.+++++.+++.+++ .++.+++++++..
T Consensus 643 d~~~~~La~aL~~ll~~l~~~~~l~~~ar~~a 674 (694)
T PRK15179 643 TVTAPDVAEALARIHDMCAADPGIARKAADWA 674 (694)
T ss_pred CCChHHHHHHHHHHHhChhccHHHHHHHHHHH
Confidence 456666666665555 4566766655443
No 103
>PLN00142 sucrose synthase
Probab=98.50 E-value=6.8e-05 Score=77.35 Aligned_cols=66 Identities=17% Similarity=0.247 Sum_probs=45.2
Q ss_pred ceec---cCch-hhhhhhhcCCceeccccccchhhhHHhHhhhheeeEEeecCCCCccCHHHHHHHHHHH----hcCHHH
Q 044266 350 FLSH---CGWN-STMEGVSNGVPFLCWPYFADQFLNESYICDIWKVGLRFNKNKNGIITREEIMKKVDQV----LEDENF 421 (462)
Q Consensus 350 ~I~H---gG~~-sv~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~g~~~~~~~~~~~~~~~l~~~i~~l----l~~~~~ 421 (462)
||.- -|.| +++||+++|+|+|+... ......|+.. .-|..++. -++++++++|.++ ++|++.
T Consensus 670 fVlPS~~EgFGLvvLEAMA~GlPVVATdv----GG~~EIV~dG-~tG~LV~P-----~D~eaLA~aI~~lLekLl~Dp~l 739 (815)
T PLN00142 670 FVQPALYEAFGLTVVEAMTCGLPTFATCQ----GGPAEIIVDG-VSGFHIDP-----YHGDEAANKIADFFEKCKEDPSY 739 (815)
T ss_pred EEeCCcccCCCHHHHHHHHcCCCEEEcCC----CCHHHHhcCC-CcEEEeCC-----CCHHHHHHHHHHHHHHhcCCHHH
Confidence 6653 4555 89999999999998644 3455556652 56888853 5788888887654 578765
Q ss_pred HHHH
Q 044266 422 KARA 425 (462)
Q Consensus 422 ~~~a 425 (462)
+++.
T Consensus 740 r~~m 743 (815)
T PLN00142 740 WNKI 743 (815)
T ss_pred HHHH
Confidence 5443
No 104
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=98.47 E-value=8e-05 Score=74.48 Aligned_cols=136 Identities=10% Similarity=0.098 Sum_probs=75.9
Q ss_pred cEEEEeccCccccCHHHHHHHHHHH---HhCCCCEEEEEcCCCCCcccccCchh---HHHHhcCCceeecccCcc---cc
Q 044266 271 SVIYVAFGSFTVFDKEQFQELASGL---ELTNRPFLWVVRPDITNDAIDAYPEG---FQDRVATRRQMVGWAPQQ---KV 341 (462)
Q Consensus 271 ~~v~vs~Gs~~~~~~~~~~~~~~a~---~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~pq~---~l 341 (462)
..+++..|.... .+.+..+++++ .+.+.++++.-.+. ....+. +.++.+.++.+....+.. .+
T Consensus 291 ~~~i~~vGrl~~--~Kg~~~li~a~~~l~~~~~~lvi~G~g~------~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~ 362 (473)
T TIGR02095 291 VPLFGVISRLTQ--QKGVDLLLAALPELLELGGQLVVLGTGD------PELEEALRELAERYPGNVRVIIGYDEALAHLI 362 (473)
T ss_pred CCEEEEEecCcc--ccChHHHHHHHHHHHHcCcEEEEECCCC------HHHHHHHHHHHHHCCCcEEEEEcCCHHHHHHH
Confidence 356666777643 22333444444 33345555543321 011111 222345667666555543 47
Q ss_pred cCCCCcccceec---cCch-hhhhhhhcCCceecccccc--chhhhHHhHhhhheeeEEeecCCCCccCHHHHHHHHHHH
Q 044266 342 LTHPSIACFLSH---CGWN-STMEGVSNGVPFLCWPYFA--DQFLNESYICDIWKVGLRFNKNKNGIITREEIMKKVDQV 415 (462)
Q Consensus 342 l~~~~~~~~I~H---gG~~-sv~eal~~GvP~l~~P~~~--DQ~~na~~v~~~~g~g~~~~~~~~~~~~~~~l~~~i~~l 415 (462)
++.+|+ +|.- -|.| +++||+.+|+|+|+....+ |...+...-... +.|..++ .-+++++.++|.++
T Consensus 363 ~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~~~~~-~~G~l~~-----~~d~~~la~~i~~~ 434 (473)
T TIGR02095 363 YAGADF--ILMPSRFEPCGLTQLYAMRYGTVPIVRRTGGLADTVVDGDPEAES-GTGFLFE-----EYDPGALLAALSRA 434 (473)
T ss_pred HHhCCE--EEeCCCcCCcHHHHHHHHHCCCCeEEccCCCccceEecCCCCCCC-CceEEeC-----CCCHHHHHHHHHHH
Confidence 877777 7743 2444 7899999999999875432 222111000121 6777774 36889999999999
Q ss_pred hc----CHHHH
Q 044266 416 LE----DENFK 422 (462)
Q Consensus 416 l~----~~~~~ 422 (462)
+. |++.+
T Consensus 435 l~~~~~~~~~~ 445 (473)
T TIGR02095 435 LRLYRQDPSLW 445 (473)
T ss_pred HHHHhcCHHHH
Confidence 87 65533
No 105
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.37 E-value=0.00016 Score=69.97 Aligned_cols=79 Identities=14% Similarity=0.147 Sum_probs=52.8
Q ss_pred cCCceeecccCcc---cccCCCCcccce------eccCc-hhhhhhhhcCCceeccccccchhhhHHhHhhhheeeEEee
Q 044266 327 ATRRQMVGWAPQQ---KVLTHPSIACFL------SHCGW-NSTMEGVSNGVPFLCWPYFADQFLNESYICDIWKVGLRFN 396 (462)
Q Consensus 327 ~~~v~~~~~~pq~---~ll~~~~~~~~I------~HgG~-~sv~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~g~~~~ 396 (462)
.+||++.+++|+. ..++++|+.++- +.++. +.+.|++++|+|+|..+. ...++. +-|..+.
T Consensus 253 ~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~~~--~~~~~~~ 323 (373)
T cd04950 253 LPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVRRY--EDEVVLI 323 (373)
T ss_pred CCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHHhh--cCcEEEe
Confidence 4789999999965 478888883332 22333 458999999999998753 122232 2233332
Q ss_pred cCCCCccCHHHHHHHHHHHhcCH
Q 044266 397 KNKNGIITREEIMKKVDQVLEDE 419 (462)
Q Consensus 397 ~~~~~~~~~~~l~~~i~~ll~~~ 419 (462)
. -+++++.++|++++.++
T Consensus 324 ----~-~d~~~~~~ai~~~l~~~ 341 (373)
T cd04950 324 ----A-DDPEEFVAAIEKALLED 341 (373)
T ss_pred ----C-CCHHHHHHHHHHHHhcC
Confidence 1 27999999999977544
No 106
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=98.34 E-value=0.00023 Score=71.39 Aligned_cols=132 Identities=13% Similarity=0.129 Sum_probs=72.0
Q ss_pred CcEEEEeccCccccCHHHHHHHHHHH---HhCCCCEEEEEcCCCCCcccccCchhH---HHHhcCCceeecccCcc---c
Q 044266 270 NSVIYVAFGSFTVFDKEQFQELASGL---ELTNRPFLWVVRPDITNDAIDAYPEGF---QDRVATRRQMVGWAPQQ---K 340 (462)
Q Consensus 270 ~~~v~vs~Gs~~~~~~~~~~~~~~a~---~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~pq~---~ 340 (462)
+..+++..|.... .+.+..+++++ .+.+.++++.-.+. ......+ .++..+|+.+....++. .
T Consensus 295 ~~~~i~~vGrl~~--~Kg~~~li~a~~~l~~~~~~lvi~G~g~------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 366 (476)
T cd03791 295 DAPLFGFVGRLTE--QKGIDLLLEALPELLELGGQLVILGSGD------PEYEEALRELAARYPGRVAVLIGYDEALAHL 366 (476)
T ss_pred CCCEEEEEeeccc--cccHHHHHHHHHHHHHcCcEEEEEecCC------HHHHHHHHHHHHhCCCcEEEEEeCCHHHHHH
Confidence 3356677787642 23333444443 33345555543322 0111112 22235677655333332 4
Q ss_pred ccCCCCcccceec---cCc-hhhhhhhhcCCceecccccc--chhhhHHhHhhhheeeEEeecCCCCccCHHHHHHHHHH
Q 044266 341 VLTHPSIACFLSH---CGW-NSTMEGVSNGVPFLCWPYFA--DQFLNESYICDIWKVGLRFNKNKNGIITREEIMKKVDQ 414 (462)
Q Consensus 341 ll~~~~~~~~I~H---gG~-~sv~eal~~GvP~l~~P~~~--DQ~~na~~v~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ 414 (462)
+++.+++ ++.- -|. .+.+||+.+|+|+|+....+ |...+...-.+. |.|..++ ..+++++.++|.+
T Consensus 367 ~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~-~~G~~~~-----~~~~~~l~~~i~~ 438 (476)
T cd03791 367 IYAGADF--FLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGE-GTGFVFE-----GYNADALLAALRR 438 (476)
T ss_pred HHHhCCE--EECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCC-CCeEEeC-----CCCHHHHHHHHHH
Confidence 7777777 6643 223 47899999999999875432 211111111122 5788884 3579999999999
Q ss_pred Hhc
Q 044266 415 VLE 417 (462)
Q Consensus 415 ll~ 417 (462)
+++
T Consensus 439 ~l~ 441 (476)
T cd03791 439 ALA 441 (476)
T ss_pred HHH
Confidence 885
No 107
>PLN02501 digalactosyldiacylglycerol synthase
Probab=98.33 E-value=0.00019 Score=72.07 Aligned_cols=79 Identities=16% Similarity=0.167 Sum_probs=54.0
Q ss_pred CceeecccCcc-cccCCCCcccceecc---C-chhhhhhhhcCCceeccccccchhhhHHhHhhhheeeEEeecCCCCcc
Q 044266 329 RRQMVGWAPQQ-KVLTHPSIACFLSHC---G-WNSTMEGVSNGVPFLCWPYFADQFLNESYICDIWKVGLRFNKNKNGII 403 (462)
Q Consensus 329 ~v~~~~~~pq~-~ll~~~~~~~~I~Hg---G-~~sv~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~g~~~~~~~~~~~ 403 (462)
++.+.++.++. ++++.+|+ ||.-+ | ..+++||+++|+|+|+....+... +.. |.+..+. -
T Consensus 602 ~V~FLG~~dd~~~lyasaDV--FVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~-----V~~--g~nGll~------~ 666 (794)
T PLN02501 602 NLNFLKGRDHADDSLHGYKV--FINPSISDVLCTATAEALAMGKFVVCADHPSNEF-----FRS--FPNCLTY------K 666 (794)
T ss_pred EEEecCCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCCEEEecCCCCce-----Eee--cCCeEec------C
Confidence 35566777755 48888887 77632 2 568999999999999986654221 222 2222232 3
Q ss_pred CHHHHHHHHHHHhcCHHHH
Q 044266 404 TREEIMKKVDQVLEDENFK 422 (462)
Q Consensus 404 ~~~~l~~~i~~ll~~~~~~ 422 (462)
+.+++.++|.++|.|+..+
T Consensus 667 D~EafAeAI~~LLsd~~~r 685 (794)
T PLN02501 667 TSEDFVAKVKEALANEPQP 685 (794)
T ss_pred CHHHHHHHHHHHHhCchhh
Confidence 7899999999999987633
No 108
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.32 E-value=2e-06 Score=67.61 Aligned_cols=117 Identities=12% Similarity=0.134 Sum_probs=75.9
Q ss_pred EEEEeccCccccC---HHHHHHHHHHHHhCCCC-EEEEEcCCCCCcccccCchhHHHHh-cCCcee--ecccCc-ccccC
Q 044266 272 VIYVAFGSFTVFD---KEQFQELASGLELTNRP-FLWVVRPDITNDAIDAYPEGFQDRV-ATRRQM--VGWAPQ-QKVLT 343 (462)
Q Consensus 272 ~v~vs~Gs~~~~~---~~~~~~~~~a~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~--~~~~pq-~~ll~ 343 (462)
.+||+-||....+ .-.-.+..+.+.+.|.. .|+.++.+. .-.++...... .+...+ .+|-|- ....+
T Consensus 5 ~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~-----~~~~d~~~~~~k~~gl~id~y~f~psl~e~I~ 79 (170)
T KOG3349|consen 5 TVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQ-----PFFGDPIDLIRKNGGLTIDGYDFSPSLTEDIR 79 (170)
T ss_pred EEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCc-----cCCCCHHHhhcccCCeEEEEEecCccHHHHHh
Confidence 8999999964211 11122355666667764 566666551 01111111111 122333 377786 45666
Q ss_pred CCCcccceeccCchhhhhhhhcCCceecccc----ccchhhhHHhHhhhheeeEEee
Q 044266 344 HPSIACFLSHCGWNSTMEGVSNGVPFLCWPY----FADQFLNESYICDIWKVGLRFN 396 (462)
Q Consensus 344 ~~~~~~~I~HgG~~sv~eal~~GvP~l~~P~----~~DQ~~na~~v~~~~g~g~~~~ 396 (462)
.+++ ||+|+|.||++|.|..|+|.|+++- -.-|..-|..+++. |.=..-.
T Consensus 80 ~Adl--VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~e-gyL~~C~ 133 (170)
T KOG3349|consen 80 SADL--VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAEE-GYLYYCT 133 (170)
T ss_pred hccE--EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHhc-CcEEEee
Confidence 6777 9999999999999999999999994 35799999999984 7765553
No 109
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.31 E-value=7.7e-05 Score=69.15 Aligned_cols=343 Identities=12% Similarity=0.105 Sum_probs=172.8
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcCCCCCCCC-CCCCHHHHH
Q 044266 5 PHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIPDGMEPEG-DRNDLGMLT 83 (462)
Q Consensus 5 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~-~~~~~~~~~ 83 (462)
+||++++.-..|++.- -.|.++|.++==+|.|++-.. +..++. |++ ++- +..+ ...++.+.+
T Consensus 2 ~ki~i~AGE~SGDllG-a~LikaLk~~~~~~efvGvgG--~~m~ae---------G~~--sl~---~~~elsvmGf~EVL 64 (381)
T COG0763 2 LKIALSAGEASGDLLG-AGLIKALKARYPDVEFVGVGG--EKMEAE---------GLE--SLF---DMEELSVMGFVEVL 64 (381)
T ss_pred ceEEEEecccchhhHH-HHHHHHHHhhCCCeEEEEecc--HHHHhc---------cCc--ccc---CHHHHHHhhHHHHH
Confidence 4788888777788764 346666665422666666543 222332 321 110 0000 123444444
Q ss_pred HHHHHhccHHHHHHHHHHhhccCCCceEEE-eCCCcchHHHHHH---HcC--CceEEEccchhHHHHHHHhHhhhhcCCC
Q 044266 84 KTMVRVMPEKLEELIENINRLENEKITCVV-ADGSMGWVMEVAE---KMK--LRRAAFWPAAAGLLALSFSVQRFLDDGI 157 (462)
Q Consensus 84 ~~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi-~D~~~~~~~~~A~---~lg--iP~v~~~~~~~~~~~~~~~~p~~~~~~~ 157 (462)
..+.. .....+++++.+.. .+||++| .|. .-+...+++ +.| +|.+.|.....+
T Consensus 65 ~~lp~-llk~~~~~~~~i~~---~kpD~~i~IDs-PdFnl~vak~lrk~~p~i~iihYV~PsVW---------------- 123 (381)
T COG0763 65 GRLPR-LLKIRRELVRYILA---NKPDVLILIDS-PDFNLRVAKKLRKAGPKIKIIHYVSPSVW---------------- 123 (381)
T ss_pred HHHHH-HHHHHHHHHHHHHh---cCCCEEEEeCC-CCCchHHHHHHHHhCCCCCeEEEECccee----------------
Confidence 44432 23335566666666 8999987 554 334454444 446 998886432211
Q ss_pred cCCCCCCccccccccCCCCcccCcccchhhhhcCCCcchhhHHHHHHhhhhhccccEEEEcCccccchhhhccCCCcccc
Q 044266 158 VDDNGTPVKQQMIQLAPTMAAIHSSKLVWACIGDFNTQKIVFDFTIDNNETIKKAERLICNSTYDLEPGALDLIPEFLPI 237 (462)
Q Consensus 158 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~p~v~~v 237 (462)
.|+..+ .....+.+|.+++--+++-++- ....-+.+||
T Consensus 124 --------------------AWr~~R---------------------a~~i~~~~D~lLailPFE~~~y-~k~g~~~~yV 161 (381)
T COG0763 124 --------------------AWRPKR---------------------AVKIAKYVDHLLAILPFEPAFY-DKFGLPCTYV 161 (381)
T ss_pred --------------------eechhh---------------------HHHHHHHhhHeeeecCCCHHHH-HhcCCCeEEe
Confidence 010000 0112234566665544443332 2222248999
Q ss_pred Cc-ccCCCCCCCCCCCCCCCCchhhHhhccCCCCcEEEEeccCccccCHHHHHHHHHHH---H--hCCCCEEEEEcCCCC
Q 044266 238 GP-LLSSNRLGNSAGYFWPEDSTCLKWLDQQQQNSVIYVAFGSFTVFDKEQFQELASGL---E--LTNRPFLWVVRPDIT 311 (462)
Q Consensus 238 Gp-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~---~--~~~~~~i~~~~~~~~ 311 (462)
|. +....+.. +..+...+-+....+++++.+-.||....-...+..+.++. + ..+.++++-+.+.
T Consensus 162 GHpl~d~i~~~-------~~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~~~~~vlp~~~~-- 232 (381)
T COG0763 162 GHPLADEIPLL-------PDREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKARYPDLKFVLPLVNA-- 232 (381)
T ss_pred CChhhhhcccc-------ccHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEecCcH--
Confidence 94 44333211 23333444454445677999999997542222233333333 2 2245666655433
Q ss_pred CcccccCchhHHH-HhcCCc-eeecccC-cc--cccCCCCcccceeccCchhhhhhhhcCCceeccc-cccchhhhHHhH
Q 044266 312 NDAIDAYPEGFQD-RVATRR-QMVGWAP-QQ--KVLTHPSIACFLSHCGWNSTMEGVSNGVPFLCWP-YFADQFLNESYI 385 (462)
Q Consensus 312 ~~~~~~~~~~~~~-~~~~~v-~~~~~~p-q~--~ll~~~~~~~~I~HgG~~sv~eal~~GvP~l~~P-~~~DQ~~na~~v 385 (462)
.. ....+ ....+. ...-++. +. +.+..+|+ .+.-+|.. ++|+..+|+|||+.= ...=-...+.+.
T Consensus 233 --~~----~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~aD~--al~aSGT~-tLE~aL~g~P~Vv~Yk~~~it~~iak~l 303 (381)
T COG0763 233 --KY----RRIIEEALKWEVAGLSLILIDGEKRKAFAAADA--ALAASGTA-TLEAALAGTPMVVAYKVKPITYFIAKRL 303 (381)
T ss_pred --HH----HHHHHHHhhccccCceEEecCchHHHHHHHhhH--HHHhccHH-HHHHHHhCCCEEEEEeccHHHHHHHHHh
Confidence 10 11111 112222 1222332 22 47766776 77777654 579999999998761 000011122222
Q ss_pred hhhhe------------eeEEeecCCCCccCHHHHHHHHHHHhcCH----HHHHHHHHHHHHHHhHhhcCCCcHHHHHHH
Q 044266 386 CDIWK------------VGLRFNKNKNGIITREEIMKKVDQVLEDE----NFKARALDLKETSLNSVREGGQSDKTFKNF 449 (462)
Q Consensus 386 ~~~~g------------~g~~~~~~~~~~~~~~~l~~~i~~ll~~~----~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~ 449 (462)
.+ .. +..++- ++..+++.|.+++..++.|+ .+++...+|.+.++. ++++..+.+.+
T Consensus 304 vk-~~yisLpNIi~~~~ivPEli---q~~~~pe~la~~l~~ll~~~~~~~~~~~~~~~l~~~l~~----~~~~e~aA~~v 375 (381)
T COG0763 304 VK-LPYVSLPNILAGREIVPELI---QEDCTPENLARALEELLLNGDRREALKEKFRELHQYLRE----DPASEIAAQAV 375 (381)
T ss_pred cc-CCcccchHHhcCCccchHHH---hhhcCHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHcC----CcHHHHHHHHH
Confidence 22 11 111111 45688999999999999998 456666666666653 54555555555
Q ss_pred HHHH
Q 044266 450 VQWI 453 (462)
Q Consensus 450 ~~~~ 453 (462)
++.+
T Consensus 376 l~~~ 379 (381)
T COG0763 376 LELL 379 (381)
T ss_pred HHHh
Confidence 5543
No 110
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=98.31 E-value=9.4e-05 Score=73.81 Aligned_cols=147 Identities=13% Similarity=0.140 Sum_probs=84.7
Q ss_pred cEEEEeccCccccCHHHHHHHHHHHHhC---CCCE-EEEEcCCCCCcccccCchhHHHH-----hcCCceeecccCcccc
Q 044266 271 SVIYVAFGSFTVFDKEQFQELASGLELT---NRPF-LWVVRPDITNDAIDAYPEGFQDR-----VATRRQMVGWAPQQKV 341 (462)
Q Consensus 271 ~~v~vs~Gs~~~~~~~~~~~~~~a~~~~---~~~~-i~~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~pq~~l 341 (462)
+.++++.|+.. +.+.+..+++|+... ...+ +..++.+. ..+.+.+. +.++|.+.++.+...+
T Consensus 319 ~~~il~vGrl~--~~Kg~~~li~A~~~l~~~~p~~~l~i~G~G~-------~~~~l~~~i~~~~l~~~V~f~G~~~~~~~ 389 (500)
T TIGR02918 319 PFSIITASRLA--KEKHIDWLVKAVVKAKKSVPELTFDIYGEGG-------EKQKLQKIINENQAQDYIHLKGHRNLSEV 389 (500)
T ss_pred CeEEEEEeccc--cccCHHHHHHHHHHHHhhCCCeEEEEEECch-------hHHHHHHHHHHcCCCCeEEEcCCCCHHHH
Confidence 35667778764 334455556655322 2233 23344431 11222221 2466888888877789
Q ss_pred cCCCCccccee---ccC-chhhhhhhhcCCceeccccccchhhhHHhHhhhheeeEEeecC--CCCccC-HHHHHHHHHH
Q 044266 342 LTHPSIACFLS---HCG-WNSTMEGVSNGVPFLCWPYFADQFLNESYICDIWKVGLRFNKN--KNGIIT-REEIMKKVDQ 414 (462)
Q Consensus 342 l~~~~~~~~I~---HgG-~~sv~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~g~~~~~~--~~~~~~-~~~l~~~i~~ 414 (462)
+..+++ +|. .-| ..+++||+++|+|+|+....+ .+...++.. .-|..++.. +...-+ .++++++|.+
T Consensus 390 ~~~adv--~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~---G~~eiI~~g-~nG~lv~~~~~~~d~~~~~~~la~~I~~ 463 (500)
T TIGR02918 390 YKDYEL--YLSASTSEGFGLTLMEAVGSGLGMIGFDVNY---GNPTFIEDN-KNGYLIPIDEEEDDEDQIITALAEKIVE 463 (500)
T ss_pred HHhCCE--EEEcCccccccHHHHHHHHhCCCEEEecCCC---CCHHHccCC-CCEEEEeCCccccchhHHHHHHHHHHHH
Confidence 988887 765 334 458999999999999974321 233445542 457766521 001112 7899999999
Q ss_pred HhcCH---HHHHHHHHHHHHH
Q 044266 415 VLEDE---NFKARALDLKETS 432 (462)
Q Consensus 415 ll~~~---~~~~~a~~l~~~~ 432 (462)
+++++ ++.+++++.++.+
T Consensus 464 ll~~~~~~~~~~~a~~~a~~f 484 (500)
T TIGR02918 464 YFNSNDIDAFHEYSYQIAEGF 484 (500)
T ss_pred HhChHHHHHHHHHHHHHHHhc
Confidence 99654 3445555544444
No 111
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.30 E-value=0.00018 Score=67.00 Aligned_cols=143 Identities=19% Similarity=0.233 Sum_probs=91.3
Q ss_pred CcEEEEeccCccccCHHHHHHHHHH----HHhC-CCCEEEEEcCCCCCcccccCchhHHHHhc--CCceee---cccCcc
Q 044266 270 NSVIYVAFGSFTVFDKEQFQELASG----LELT-NRPFLWVVRPDITNDAIDAYPEGFQDRVA--TRRQMV---GWAPQQ 339 (462)
Q Consensus 270 ~~~v~vs~Gs~~~~~~~~~~~~~~a----~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~---~~~pq~ 339 (462)
+..+++|+=...... +.++.+.++ .++. +..+|..+..+ ..+.+-..+++. .|+++. +|.+..
T Consensus 204 ~~~iLvT~HRreN~~-~~~~~i~~al~~i~~~~~~~~viyp~H~~------~~v~e~~~~~L~~~~~v~li~pl~~~~f~ 276 (383)
T COG0381 204 KKYILVTAHRRENVG-EPLEEICEALREIAEEYPDVIVIYPVHPR------PRVRELVLKRLKNVERVKLIDPLGYLDFH 276 (383)
T ss_pred CcEEEEEcchhhccc-ccHHHHHHHHHHHHHhCCCceEEEeCCCC------hhhhHHHHHHhCCCCcEEEeCCcchHHHH
Confidence 448888875554333 334444443 3443 34455444333 001111123343 347765 666777
Q ss_pred cccCCCCcccceeccCchhhhhhhhcCCceeccccccchhhhHHhHhhhheeeEEeecCCCCccCHHHHHHHHHHHhcCH
Q 044266 340 KVLTHPSIACFLSHCGWNSTMEGVSNGVPFLCWPYFADQFLNESYICDIWKVGLRFNKNKNGIITREEIMKKVDQVLEDE 419 (462)
Q Consensus 340 ~ll~~~~~~~~I~HgG~~sv~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ll~~~ 419 (462)
.++.++.+ ++|-.|. -.=||-..|+|.+++=...|++. .++ + |.-+.+. .+.+.+.+++.++++++
T Consensus 277 ~L~~~a~~--iltDSGg-iqEEAp~lg~Pvl~lR~~TERPE---~v~-a-gt~~lvg------~~~~~i~~~~~~ll~~~ 342 (383)
T COG0381 277 NLMKNAFL--ILTDSGG-IQEEAPSLGKPVLVLRDTTERPE---GVE-A-GTNILVG------TDEENILDAATELLEDE 342 (383)
T ss_pred HHHHhceE--EEecCCc-hhhhHHhcCCcEEeeccCCCCcc---cee-c-CceEEeC------ccHHHHHHHHHHHhhCh
Confidence 89999877 9998873 45689999999999999999986 333 2 5555554 57899999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 044266 420 NFKARALDLKETSL 433 (462)
Q Consensus 420 ~~~~~a~~l~~~~~ 433 (462)
+..+|......-..
T Consensus 343 ~~~~~m~~~~npYg 356 (383)
T COG0381 343 EFYERMSNAKNPYG 356 (383)
T ss_pred HHHHHHhcccCCCc
Confidence 87776555444443
No 112
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.16 E-value=0.00049 Score=68.76 Aligned_cols=90 Identities=11% Similarity=0.142 Sum_probs=62.2
Q ss_pred cCCceeecccCcccccCCCCcccceec----cCchhhhhhhhcCCceeccccccchhhhHHhHhhh----h-eeeEEeec
Q 044266 327 ATRRQMVGWAPQQKVLTHPSIACFLSH----CGWNSTMEGVSNGVPFLCWPYFADQFLNESYICDI----W-KVGLRFNK 397 (462)
Q Consensus 327 ~~~v~~~~~~pq~~ll~~~~~~~~I~H----gG~~sv~eal~~GvP~l~~P~~~DQ~~na~~v~~~----~-g~g~~~~~ 397 (462)
.+||.+.+...-.++|+.+++ +|.- |--.+++||+++|+|+|+-. .......+++. + ..|..++
T Consensus 353 ~~~V~f~G~~~v~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVatd----~g~~~elv~~~~~~~~g~~G~lv~- 425 (475)
T cd03813 353 EDNVKFTGFQNVKEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVATD----VGSCRELIEGADDEALGPAGEVVP- 425 (475)
T ss_pred CCeEEEcCCccHHHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEECC----CCChHHHhcCCcccccCCceEEEC-
Confidence 478888884444578877777 6643 33568999999999999853 33334444431 1 2677774
Q ss_pred CCCCccCHHHHHHHHHHHhcCHHHHHHHHH
Q 044266 398 NKNGIITREEIMKKVDQVLEDENFKARALD 427 (462)
Q Consensus 398 ~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~ 427 (462)
..++++++++|.++++|++.+++..+
T Consensus 426 ----~~d~~~la~ai~~ll~~~~~~~~~~~ 451 (475)
T cd03813 426 ----PADPEALARAILRLLKDPELRRAMGE 451 (475)
T ss_pred ----CCCHHHHHHHHHHHhcCHHHHHHHHH
Confidence 36899999999999999876554433
No 113
>PLN02316 synthase/transferase
Probab=98.09 E-value=0.002 Score=68.61 Aligned_cols=84 Identities=7% Similarity=0.004 Sum_probs=53.2
Q ss_pred cCCceeecccCcc---cccCCCCcccceecc---C-chhhhhhhhcCCceecccccc--chhhh-------HHhHhhhhe
Q 044266 327 ATRRQMVGWAPQQ---KVLTHPSIACFLSHC---G-WNSTMEGVSNGVPFLCWPYFA--DQFLN-------ESYICDIWK 390 (462)
Q Consensus 327 ~~~v~~~~~~pq~---~ll~~~~~~~~I~Hg---G-~~sv~eal~~GvP~l~~P~~~--DQ~~n-------a~~v~~~~g 390 (462)
++++.+....+.. .+++.+|+ |+.-. | -.+.+||+.+|+|.|+....+ |.... ++.... -+
T Consensus 899 ~~rV~f~g~~de~lah~iyaaADi--flmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~-~~ 975 (1036)
T PLN02316 899 HDRARLCLTYDEPLSHLIYAGADF--ILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGL-EP 975 (1036)
T ss_pred CCeEEEEecCCHHHHHHHHHhCcE--EEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhcccccccccccccccc-CC
Confidence 4567666444543 57877777 88532 2 348999999999888765432 22111 110011 14
Q ss_pred eeEEeecCCCCccCHHHHHHHHHHHhcC
Q 044266 391 VGLRFNKNKNGIITREEIMKKVDQVLED 418 (462)
Q Consensus 391 ~g~~~~~~~~~~~~~~~l~~~i~~ll~~ 418 (462)
-|..++ ..+++.|..+|.+++.+
T Consensus 976 tGflf~-----~~d~~aLa~AL~raL~~ 998 (1036)
T PLN02316 976 NGFSFD-----GADAAGVDYALNRAISA 998 (1036)
T ss_pred ceEEeC-----CCCHHHHHHHHHHHHhh
Confidence 677774 46899999999999975
No 114
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=98.02 E-value=0.00027 Score=68.26 Aligned_cols=86 Identities=17% Similarity=0.170 Sum_probs=61.4
Q ss_pred cCCceeecccCcc-cccCCCCcccceec--cCchhhhhhhhcCCceeccccccchhhhHHhHhhhheeeEEeecCCCCcc
Q 044266 327 ATRRQMVGWAPQQ-KVLTHPSIACFLSH--CGWNSTMEGVSNGVPFLCWPYFADQFLNESYICDIWKVGLRFNKNKNGII 403 (462)
Q Consensus 327 ~~~v~~~~~~pq~-~ll~~~~~~~~I~H--gG~~sv~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~g~~~~~~~~~~~ 403 (462)
++++.+.++.++. .++..+++-++.++ |...+++||+++|+|+|+..... .....++.. ..|..++ .-
T Consensus 260 ~~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v~~~-~~G~lv~-----~~ 330 (372)
T cd04949 260 EDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEIIEDG-ENGYLVP-----KG 330 (372)
T ss_pred cceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHcccC-CCceEeC-----CC
Confidence 4678888877664 68888888334443 33558999999999999864321 233445553 6777774 35
Q ss_pred CHHHHHHHHHHHhcCHHH
Q 044266 404 TREEIMKKVDQVLEDENF 421 (462)
Q Consensus 404 ~~~~l~~~i~~ll~~~~~ 421 (462)
+.++++++|.++++|++.
T Consensus 331 d~~~la~~i~~ll~~~~~ 348 (372)
T cd04949 331 DIEALAEAIIELLNDPKL 348 (372)
T ss_pred cHHHHHHHHHHHHcCHHH
Confidence 899999999999999843
No 115
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.99 E-value=0.00015 Score=70.87 Aligned_cols=112 Identities=16% Similarity=0.212 Sum_probs=74.9
Q ss_pred cCCceeecccCcc---cccCCCCcccceeccC----chhhhhhhhcCCceeccccccchhhhHHhHhhhheeeEEeecCC
Q 044266 327 ATRRQMVGWAPQQ---KVLTHPSIACFLSHCG----WNSTMEGVSNGVPFLCWPYFADQFLNESYICDIWKVGLRFNKNK 399 (462)
Q Consensus 327 ~~~v~~~~~~pq~---~ll~~~~~~~~I~HgG----~~sv~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~g~~~~~~~ 399 (462)
.++|.+.+|+++. .++..++++++|...- -++++||+++|+|+|+-. .......+.+. +.|..+.
T Consensus 288 ~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~----vgg~~e~i~~~-~~G~l~~--- 359 (407)
T cd04946 288 NISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATN----VGGTPEIVDNG-GNGLLLS--- 359 (407)
T ss_pred CceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCC----CCCcHHHhcCC-CcEEEeC---
Confidence 3568889999976 4555544555776543 468999999999999864 33455566652 4888774
Q ss_pred CCccCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhHhhcCCCcHHHHHHHH
Q 044266 400 NGIITREEIMKKVDQVLEDENFKARALDLKETSLNSVREGGQSDKTFKNFV 450 (462)
Q Consensus 400 ~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~ 450 (462)
...+.++++++|.++++|++.+++ +++..++.+.+.-+......+|+
T Consensus 360 -~~~~~~~la~~I~~ll~~~~~~~~---m~~~ar~~~~~~f~~~~~~~~~~ 406 (407)
T cd04946 360 -KDPTPNELVSSLSKFIDNEEEYQT---MREKAREKWEENFNASKNYREFA 406 (407)
T ss_pred -CCCCHHHHHHHHHHHHhCHHHHHH---HHHHHHHHHHHHcCHHHhHHHhc
Confidence 335889999999999998865443 44444444444455555555543
No 116
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.88 E-value=0.00011 Score=62.33 Aligned_cols=92 Identities=21% Similarity=0.292 Sum_probs=68.2
Q ss_pred hcCCceeecccCc---ccccCCCCcccceec----cCchhhhhhhhcCCceeccccccchhhhHHhHhhhheeeEEeecC
Q 044266 326 VATRRQMVGWAPQ---QKVLTHPSIACFLSH----CGWNSTMEGVSNGVPFLCWPYFADQFLNESYICDIWKVGLRFNKN 398 (462)
Q Consensus 326 ~~~~v~~~~~~pq---~~ll~~~~~~~~I~H----gG~~sv~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~g~~~~~~ 398 (462)
...++.+.+++++ ..++..+++ +|+. |+..+++||+++|+|+|+. |...+...+.+. +.|..++.
T Consensus 71 ~~~~i~~~~~~~~~~l~~~~~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~~----~~~~~~e~~~~~-~~g~~~~~- 142 (172)
T PF00534_consen 71 LKENIIFLGYVPDDELDELYKSSDI--FVSPSRNEGFGLSLLEAMACGCPVIAS----DIGGNNEIINDG-VNGFLFDP- 142 (172)
T ss_dssp CGTTEEEEESHSHHHHHHHHHHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEEE----SSTHHHHHSGTT-TSEEEEST-
T ss_pred cccccccccccccccccccccccee--ccccccccccccccccccccccceeec----cccCCceeeccc-cceEEeCC-
Confidence 3578889999983 358888887 8877 6677999999999999975 455566666763 67888853
Q ss_pred CCCccCHHHHHHHHHHHhcCHHHHHHHHHHH
Q 044266 399 KNGIITREEIMKKVDQVLEDENFKARALDLK 429 (462)
Q Consensus 399 ~~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~ 429 (462)
.+.+++.++|.++++|++.+++..+-+
T Consensus 143 ----~~~~~l~~~i~~~l~~~~~~~~l~~~~ 169 (172)
T PF00534_consen 143 ----NDIEELADAIEKLLNDPELRQKLGKNA 169 (172)
T ss_dssp ----TSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHHHCCHHHHHHHHHHh
Confidence 499999999999999886555444433
No 117
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.86 E-value=0.00064 Score=65.85 Aligned_cols=86 Identities=15% Similarity=0.274 Sum_probs=62.6
Q ss_pred hcCCceeecccCcc---cccCCCCcccceec----cCc-hhhhhhhhcCCceeccccccchhhhHHhHhhhheeeEEeec
Q 044266 326 VATRRQMVGWAPQQ---KVLTHPSIACFLSH----CGW-NSTMEGVSNGVPFLCWPYFADQFLNESYICDIWKVGLRFNK 397 (462)
Q Consensus 326 ~~~~v~~~~~~pq~---~ll~~~~~~~~I~H----gG~-~sv~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~g~~~~~ 397 (462)
...++.+.+++|+. .+|+.+|+ +|.. .|. .+++||+++|+|+|+.... .+...+++. ..|..+.
T Consensus 255 l~~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~g----g~~Eiv~~~-~~G~~l~- 326 (380)
T PRK15484 255 IGDRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTKG----GITEFVLEG-ITGYHLA- 326 (380)
T ss_pred cCCcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCCC----CcHhhcccC-CceEEEe-
Confidence 45678888999865 46888888 7653 333 5788999999999997543 344445552 5676552
Q ss_pred CCCCccCHHHHHHHHHHHhcCHHHH
Q 044266 398 NKNGIITREEIMKKVDQVLEDENFK 422 (462)
Q Consensus 398 ~~~~~~~~~~l~~~i~~ll~~~~~~ 422 (462)
...++++++++|.++++|++.+
T Consensus 327 ---~~~d~~~la~~I~~ll~d~~~~ 348 (380)
T PRK15484 327 ---EPMTSDSIISDINRTLADPELT 348 (380)
T ss_pred ---CCCCHHHHHHHHHHHHcCHHHH
Confidence 3358999999999999998753
No 118
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.86 E-value=0.00028 Score=68.37 Aligned_cols=142 Identities=16% Similarity=0.193 Sum_probs=80.9
Q ss_pred CcEEEEeccCccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCcccccCchhHHHH------hcCCceeecccCccc---
Q 044266 270 NSVIYVAFGSFTVFDKEQFQELASGLELTNRPFLWVVRPDITNDAIDAYPEGFQDR------VATRRQMVGWAPQQK--- 340 (462)
Q Consensus 270 ~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~~~~pq~~--- 340 (462)
..++|.+|.+..+..++.++.-.+.++..+...+|........ ...+.+. .++++.+.++.|+.+
T Consensus 284 d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~~------~~~l~~~~~~~Gv~~~Ri~f~~~~~~~ehl~ 357 (468)
T PF13844_consen 284 DAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPASG------EARLRRRFAAHGVDPDRIIFSPVAPREEHLR 357 (468)
T ss_dssp SSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTTH------HHHHHHHHHHTTS-GGGEEEEE---HHHHHH
T ss_pred CceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHHH------HHHHHHHHHHcCCChhhEEEcCCCCHHHHHH
Confidence 4599999999999999998888888888888888887644110 1222222 136677778777543
Q ss_pred ccCCCCc--ccceeccCchhhhhhhhcCCceeccccc-cchhhhHHhHhhhheeeEEeecCCCCccCHHHHHHHHHHHhc
Q 044266 341 VLTHPSI--ACFLSHCGWNSTMEGVSNGVPFLCWPYF-ADQFLNESYICDIWKVGLRFNKNKNGIITREEIMKKVDQVLE 417 (462)
Q Consensus 341 ll~~~~~--~~~I~HgG~~sv~eal~~GvP~l~~P~~-~DQ~~na~~v~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ll~ 417 (462)
.+..+|+ +. ...+|.+|++|||+.|||+|.+|-- .=...-+..+.. +|+...+- .+.++-.+.--++-+
T Consensus 358 ~~~~~DI~LDT-~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~-lGl~ElIA------~s~~eYv~~Av~La~ 429 (468)
T PF13844_consen 358 RYQLADICLDT-FPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRA-LGLPELIA------DSEEEYVEIAVRLAT 429 (468)
T ss_dssp HGGG-SEEE---SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHH-HT-GGGB-------SSHHHHHHHHHHHHH
T ss_pred HhhhCCEEeeC-CCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHH-cCCchhcC------CCHHHHHHHHHHHhC
Confidence 4455555 22 3568899999999999999999932 233344455565 68876664 366666666667777
Q ss_pred CHHHHHHH
Q 044266 418 DENFKARA 425 (462)
Q Consensus 418 ~~~~~~~a 425 (462)
|++++++.
T Consensus 430 D~~~l~~l 437 (468)
T PF13844_consen 430 DPERLRAL 437 (468)
T ss_dssp -HHHHHHH
T ss_pred CHHHHHHH
Confidence 88765443
No 119
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.81 E-value=0.014 Score=58.04 Aligned_cols=64 Identities=20% Similarity=0.197 Sum_probs=46.8
Q ss_pred cCCceeecccCcc-cccCCCCcccceec---cC-chhhhhhhhcCCceeccccccchhhhHHhHhhhheeeEEeec
Q 044266 327 ATRRQMVGWAPQQ-KVLTHPSIACFLSH---CG-WNSTMEGVSNGVPFLCWPYFADQFLNESYICDIWKVGLRFNK 397 (462)
Q Consensus 327 ~~~v~~~~~~pq~-~ll~~~~~~~~I~H---gG-~~sv~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~g~~~~~ 397 (462)
.++|++.+|..+. .+|..+++ ||.. -| -++++||+++|+|+|+... ..+...|.+. ..|..++.
T Consensus 454 ~d~V~FlG~~~Dv~~~LaaADV--fVlPS~~EGfp~vlLEAMA~GlPVVATdv----GG~~EiV~dG-~nG~LVp~ 522 (578)
T PRK15490 454 LERILFVGASRDVGYWLQKMNV--FILFSRYEGLPNVLIEAQMVGVPVISTPA----GGSAECFIEG-VSGFILDD 522 (578)
T ss_pred CCcEEECCChhhHHHHHHhCCE--EEEcccccCccHHHHHHHHhCCCEEEeCC----CCcHHHcccC-CcEEEECC
Confidence 4788888886543 57888887 8753 44 5699999999999997754 3455566663 67888753
No 120
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.73 E-value=0.0035 Score=55.38 Aligned_cols=48 Identities=15% Similarity=0.162 Sum_probs=36.5
Q ss_pred cCCceeecccCc-c---cccCCCCcccceeccC----chhhhhhhhcCCceecccccc
Q 044266 327 ATRRQMVGWAPQ-Q---KVLTHPSIACFLSHCG----WNSTMEGVSNGVPFLCWPYFA 376 (462)
Q Consensus 327 ~~~v~~~~~~pq-~---~ll~~~~~~~~I~HgG----~~sv~eal~~GvP~l~~P~~~ 376 (462)
..|+.+.+++++ . .++..+++ +|+-.. .++++||+.+|+|+|+.+...
T Consensus 160 ~~~v~~~~~~~~~~~~~~~~~~~di--~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~ 215 (229)
T cd01635 160 LDRVIFLGGLDPEELLALLLAAADV--FVLPSLREGFGLVVLEAMACGLPVIATDVGG 215 (229)
T ss_pred cccEEEeCCCCcHHHHHHHhhcCCE--EEecccccCcChHHHHHHhCCCCEEEcCCCC
Confidence 467888888743 2 35544666 888776 789999999999999987654
No 121
>PRK14099 glycogen synthase; Provisional
Probab=97.71 E-value=0.015 Score=58.16 Aligned_cols=40 Identities=25% Similarity=0.254 Sum_probs=31.4
Q ss_pred CCCEEEEEcCC------CccChHHHHHHHHHHHhCCCEEEEEeCCc
Q 044266 3 RRPHVLAFPYP------AQGHVIPLLEISQCLVKHGVKVTFLNTDY 42 (462)
Q Consensus 3 ~~~~Il~~~~~------~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 42 (462)
+++||||++.- +.|=-.-.-+|.++|+++||+|.++.+..
T Consensus 2 ~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y 47 (485)
T PRK14099 2 TPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGY 47 (485)
T ss_pred CCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 67899998843 33444556788899999999999999965
No 122
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=97.60 E-value=0.016 Score=54.75 Aligned_cols=108 Identities=13% Similarity=0.099 Sum_probs=68.8
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhC--CCEEEEEeCCcchHHHHHhhcCCCCCCCCeE-EEEcCCCCCCCCCCCCHHHH
Q 044266 6 HVLAFPYPAQGHVIPLLEISQCLVKH--GVKVTFLNTDYNHKRVVNALGQNNYIGDQIK-LVSIPDGMEPEGDRNDLGML 82 (462)
Q Consensus 6 ~Il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~-~~~i~~~~~~~~~~~~~~~~ 82 (462)
|||++-....|++.-..++.+.|+++ +.+|++++.+.+.+.++.. +.+. ++.++.. ... ...
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~~~~~~~~--------p~vd~v~~~~~~-~~~---~~~--- 65 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGFADIVRLH--------PAVDEVIPVALR-RWR---KTL--- 65 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhHhhhhhcC--------CCccEEEEechh-hhh---hcc---
Confidence 58899999999999999999999986 8999999999888877754 4554 4444421 000 000
Q ss_pred HHHHHHhccHHHHHHHHHHhhccCCCceEEEeCCCcchHHHHHHHcCCceEE
Q 044266 83 TKTMVRVMPEKLEELIENINRLENEKITCVVADGSMGWVMEVAEKMKLRRAA 134 (462)
Q Consensus 83 ~~~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~~~~~~A~~lgiP~v~ 134 (462)
+. ......+..+.+.++. .++|++|.-....-...++...+.+.+.
T Consensus 66 ~~---~~~~~~~~~~~~~lr~---~~yD~vi~~~~~~~s~~l~~~~~~~r~g 111 (319)
T TIGR02193 66 FS---AATWREIKALRALLRA---ERYDAVIDAQGLIKSALVARMARGPRHG 111 (319)
T ss_pred cc---chhHHHHHHHHHHHhh---ccchhhhhhhhhHHHHHHHHhhCCceec
Confidence 00 0011223344455555 8999998654444455566666644333
No 123
>PRK10125 putative glycosyl transferase; Provisional
Probab=97.48 E-value=0.023 Score=55.45 Aligned_cols=114 Identities=12% Similarity=0.001 Sum_probs=65.4
Q ss_pred EEEeccCccccCHHHHHHHHHHHHhCCCCE-EEEEcCCCCCcccccCchhHHHHhcCCceeecccCc----ccccCCCCc
Q 044266 273 IYVAFGSFTVFDKEQFQELASGLELTNRPF-LWVVRPDITNDAIDAYPEGFQDRVATRRQMVGWAPQ----QKVLTHPSI 347 (462)
Q Consensus 273 v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq----~~ll~~~~~ 347 (462)
+++..|.....+.+.+..+++|+...+.++ ++.++.+ +. . ...++...++... ..+++.+|+
T Consensus 243 ~il~v~~~~~~~~Kg~~~li~A~~~l~~~~~L~ivG~g----~~----~-----~~~~v~~~g~~~~~~~l~~~y~~aDv 309 (405)
T PRK10125 243 KIAVVAHDLRYDGKTDQQLVREMMALGDKIELHTFGKF----SP----F-----TAGNVVNHGFETDKRKLMSALNQMDA 309 (405)
T ss_pred EEEEEEeccccCCccHHHHHHHHHhCCCCeEEEEEcCC----Cc----c-----cccceEEecCcCCHHHHHHHHHhCCE
Confidence 344445422223344567888887765443 3444432 00 0 1234555566532 235666666
Q ss_pred ccceec----cCchhhhhhhhcCCceeccccccchhhhHHhHhhhheeeEEeecCCCCccCHHHHHHHH
Q 044266 348 ACFLSH----CGWNSTMEGVSNGVPFLCWPYFADQFLNESYICDIWKVGLRFNKNKNGIITREEIMKKV 412 (462)
Q Consensus 348 ~~~I~H----gG~~sv~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~g~~~~~~~~~~~~~~~l~~~i 412 (462)
||.- |--.+++||+++|+|+|+....+ ....+.. +-|..++. -++++|++++
T Consensus 310 --fV~pS~~Egfp~vilEAmA~G~PVVat~~gG----~~Eiv~~--~~G~lv~~-----~d~~~La~~~ 365 (405)
T PRK10125 310 --LVFSSRVDNYPLILCEALSIGVPVIATHSDA----AREVLQK--SGGKTVSE-----EEVLQLAQLS 365 (405)
T ss_pred --EEECCccccCcCHHHHHHHcCCCEEEeCCCC----hHHhEeC--CcEEEECC-----CCHHHHHhcc
Confidence 7653 33568999999999999997654 2223332 56888853 4778888754
No 124
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=97.47 E-value=0.12 Score=50.37 Aligned_cols=178 Identities=11% Similarity=0.157 Sum_probs=100.2
Q ss_pred HhhccCCCCcEEEEeccCcccc----------CHHHHHHHHHHHHhCCCCEEEEEcCCC-CC--cccccCchhHHHHhc-
Q 044266 262 KWLDQQQQNSVIYVAFGSFTVF----------DKEQFQELASGLELTNRPFLWVVRPDI-TN--DAIDAYPEGFQDRVA- 327 (462)
Q Consensus 262 ~~l~~~~~~~~v~vs~Gs~~~~----------~~~~~~~~~~a~~~~~~~~i~~~~~~~-~~--~~~~~~~~~~~~~~~- 327 (462)
.|+.....+++|-|+.-..... ..+.+..+++.+...|+++++..--.. +. ..-......+.+.++
T Consensus 226 ~~~~~~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~g~~Vv~lp~~~~~~~~~~dD~~~~~~l~~~~~~ 305 (426)
T PRK10017 226 HWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDEGYQVIALSTCTGIDSYNKDDRMVALNLRQHVSD 305 (426)
T ss_pred hhhcccccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHCCCeEEEEecccCccCCCCchHHHHHHHHHhccc
Confidence 4444333456888876544311 122344566666566888776542110 00 000000112222332
Q ss_pred -CCceee--cccCcc--cccCCCCcccceeccCchhhhhhhhcCCceeccccccchhhhHHhHhhhheeeEE-eecCCCC
Q 044266 328 -TRRQMV--GWAPQQ--KVLTHPSIACFLSHCGWNSTMEGVSNGVPFLCWPYFADQFLNESYICDIWKVGLR-FNKNKNG 401 (462)
Q Consensus 328 -~~v~~~--~~~pq~--~ll~~~~~~~~I~HgG~~sv~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~g~~-~~~~~~~ 401 (462)
.++++. .+-|.+ .+++++++ +|..= +=++.-|+..|||.+.++. | +-....++. +|.... .+. .
T Consensus 306 ~~~~~vi~~~~~~~e~~~iIs~~dl--~ig~R-lHa~I~a~~~gvP~i~i~Y--~-~K~~~~~~~-lg~~~~~~~~---~ 375 (426)
T PRK10017 306 PARYHVVMDELNDLEMGKILGACEL--TVGTR-LHSAIISMNFGTPAIAINY--E-HKSAGIMQQ-LGLPEMAIDI---R 375 (426)
T ss_pred ccceeEecCCCChHHHHHHHhhCCE--EEEec-chHHHHHHHcCCCEEEeee--h-HHHHHHHHH-cCCccEEech---h
Confidence 233332 333433 67877766 77532 2246668889999999988 3 333334455 677755 443 6
Q ss_pred ccCHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHhHhhcCCCcHHHHHHHHHHHHh
Q 044266 402 IITREEIMKKVDQVLEDE-NFKARALDLKETSLNSVREGGQSDKTFKNFVQWIKA 455 (462)
Q Consensus 402 ~~~~~~l~~~i~~ll~~~-~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 455 (462)
.++.++|.+.++++++|. +++++.+..-++++. ...+...++++.+.+
T Consensus 376 ~l~~~~Li~~v~~~~~~r~~~~~~l~~~v~~~r~------~~~~~~~~~~~~~~~ 424 (426)
T PRK10017 376 HLLDGSLQAMVADTLGQLPALNARLAEAVSRERQ------TGMQMVQSVLERIGE 424 (426)
T ss_pred hCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcc
Confidence 689999999999999985 566666666666554 344566777776654
No 125
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.44 E-value=0.00077 Score=52.34 Aligned_cols=108 Identities=19% Similarity=0.200 Sum_probs=68.2
Q ss_pred EEEeccCccccCHHHHH--HHHHHHHhCCCCEEEEEcCCCCCcccccCchhHHHHhcCCceeeccc--Cc-ccccCCCCc
Q 044266 273 IYVAFGSFTVFDKEQFQ--ELASGLELTNRPFLWVVRPDITNDAIDAYPEGFQDRVATRRQMVGWA--PQ-QKVLTHPSI 347 (462)
Q Consensus 273 v~vs~Gs~~~~~~~~~~--~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--pq-~~ll~~~~~ 347 (462)
+||+-||....=...+. ++..-.+....++|+.++++ .. .| +.+ .++.+|. +- +.+...+.+
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~----d~--kp------vag-l~v~~F~~~~kiQsli~darI 68 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNG----DI--KP------VAG-LRVYGFDKEEKIQSLIHDARI 68 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCC----Cc--cc------ccc-cEEEeechHHHHHHHhhcceE
Confidence 68999997321111111 12222233345788888875 11 12 011 2344443 43 345555555
Q ss_pred ccceeccCchhhhhhhhcCCceecccccc--------chhhhHHhHhhhheeeEEee
Q 044266 348 ACFLSHCGWNSTMEGVSNGVPFLCWPYFA--------DQFLNESYICDIWKVGLRFN 396 (462)
Q Consensus 348 ~~~I~HgG~~sv~eal~~GvP~l~~P~~~--------DQ~~na~~v~~~~g~g~~~~ 396 (462)
+|+|+|.||++.++..++|.+++|--. -|-..|..+++ ++.-....
T Consensus 69 --VISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae-~~~vv~~s 122 (161)
T COG5017 69 --VISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAE-INYVVACS 122 (161)
T ss_pred --EEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHh-cCceEEEc
Confidence 999999999999999999999999543 37778888888 68777774
No 126
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.39 E-value=0.098 Score=47.34 Aligned_cols=111 Identities=16% Similarity=0.000 Sum_probs=74.2
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCc--chHHHHHhhcCCCCCCCCeEEEEcCCCCCCCCCCCCHHHHH
Q 044266 6 HVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDY--NHKRVVNALGQNNYIGDQIKLVSIPDGMEPEGDRNDLGMLT 83 (462)
Q Consensus 6 ~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~--~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~ 83 (462)
||++=. +-.-|+.-+-.+-++|..+||+|.+-+-.. ..+.+... |+.+..+...- ...+.+.+
T Consensus 2 kVwiDI-~n~~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~y---------gf~~~~Igk~g-----~~tl~~Kl 66 (346)
T COG1817 2 KVWIDI-GNPPHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLDLY---------GFPYKSIGKHG-----GVTLKEKL 66 (346)
T ss_pred eEEEEc-CCcchhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHHHh---------CCCeEeecccC-----CccHHHHH
Confidence 444432 445688889999999999999998877654 23455555 88888876431 11222222
Q ss_pred HHHHHhccHHHHHHHHHHhhccCCCceEEEeCCCcchHHHHHHHcCCceEEEccch
Q 044266 84 KTMVRVMPEKLEELIENINRLENEKITCVVADGSMGWVMEVAEKMKLRRAAFWPAA 139 (462)
Q Consensus 84 ~~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~~~~~~A~~lgiP~v~~~~~~ 139 (462)
-....+ .-.+.+++.. .+||+.+. -..+....+|-.+|+|.+.+.-..
T Consensus 67 ~~~~eR-~~~L~ki~~~------~kpdv~i~-~~s~~l~rvafgLg~psIi~~D~e 114 (346)
T COG1817 67 LESAER-VYKLSKIIAE------FKPDVAIG-KHSPELPRVAFGLGIPSIIFVDNE 114 (346)
T ss_pred HHHHHH-HHHHHHHHhh------cCCceEee-cCCcchhhHHhhcCCceEEecCCh
Confidence 222222 1224455555 99999999 567889999999999999986543
No 127
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=97.22 E-value=0.00068 Score=54.89 Aligned_cols=80 Identities=18% Similarity=0.290 Sum_probs=49.7
Q ss_pred cCCceeecccCc-ccccCCCCcccceec--cC-chhhhhhhhcCCceeccccccchhhhHHhHhhhheeeEEeecCCCCc
Q 044266 327 ATRRQMVGWAPQ-QKVLTHPSIACFLSH--CG-WNSTMEGVSNGVPFLCWPYFADQFLNESYICDIWKVGLRFNKNKNGI 402 (462)
Q Consensus 327 ~~~v~~~~~~pq-~~ll~~~~~~~~I~H--gG-~~sv~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~g~~~~~~~~~~ 402 (462)
.+|+++.+|++. .++++.+++.+..+. .| -+++.|++.+|+|+|+.+.. ....++. .+.|..+.
T Consensus 52 ~~~v~~~g~~~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~~-----~~~~~~~-~~~~~~~~------ 119 (135)
T PF13692_consen 52 RPNVRFHGFVEELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDNG-----AEGIVEE-DGCGVLVA------ 119 (135)
T ss_dssp HCTEEEE-S-HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHHH-----CHCHS----SEEEE-T------
T ss_pred CCCEEEcCCHHHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCcc-----hhhheee-cCCeEEEC------
Confidence 568999999964 368888888554432 23 48999999999999998761 2223333 37776663
Q ss_pred cCHHHHHHHHHHHhcC
Q 044266 403 ITREEIMKKVDQVLED 418 (462)
Q Consensus 403 ~~~~~l~~~i~~ll~~ 418 (462)
-+++++.++|.++++|
T Consensus 120 ~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 120 NDPEELAEAIERLLND 135 (135)
T ss_dssp T-HHHHHHHHHHHHH-
T ss_pred CCHHHHHHHHHHHhcC
Confidence 3999999999999875
No 128
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=97.13 E-value=0.0017 Score=61.73 Aligned_cols=108 Identities=15% Similarity=0.333 Sum_probs=76.7
Q ss_pred cCCceeecccCcccc---cCCCCcccceec-------cCc------hhhhhhhhcCCceeccccccchhhhHHhHhhhhe
Q 044266 327 ATRRQMVGWAPQQKV---LTHPSIACFLSH-------CGW------NSTMEGVSNGVPFLCWPYFADQFLNESYICDIWK 390 (462)
Q Consensus 327 ~~~v~~~~~~pq~~l---l~~~~~~~~I~H-------gG~------~sv~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g 390 (462)
.+||.+.+|+|+.++ |.. +.+++... |.+ +-+.+.|++|+|+|+. ++...+..|++. +
T Consensus 206 ~~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~----~~~~~~~~V~~~-~ 279 (333)
T PRK09814 206 SANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVW----SKAAIADFIVEN-G 279 (333)
T ss_pred CCCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEEC----CCccHHHHHHhC-C
Confidence 578999999998764 443 33222221 111 1267789999999986 556778888885 9
Q ss_pred eeEEeecCCCCccCHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHhHhhcCCCcHHHHHHHHH
Q 044266 391 VGLRFNKNKNGIITREEIMKKVDQVLEDE--NFKARALDLKETSLNSVREGGQSDKTFKNFVQ 451 (462)
Q Consensus 391 ~g~~~~~~~~~~~~~~~l~~~i~~ll~~~--~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 451 (462)
+|..++ +.+++.+++.++..+. ++++|++++++++++ |.-..+++++++.
T Consensus 280 ~G~~v~-------~~~el~~~l~~~~~~~~~~m~~n~~~~~~~~~~----g~~~~~~~~~~~~ 331 (333)
T PRK09814 280 LGFVVD-------SLEELPEIIDNITEEEYQEMVENVKKISKLLRN----GYFTKKALVDAIK 331 (333)
T ss_pred ceEEeC-------CHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhc----chhHHHHHHHHHh
Confidence 999993 5678999998865332 578999999999986 5555666666554
No 129
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=97.03 E-value=0.013 Score=47.50 Aligned_cols=103 Identities=15% Similarity=0.202 Sum_probs=66.2
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcCCCCCCCCCCCCHHHHHHH
Q 044266 6 HVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIPDGMEPEGDRNDLGMLTKT 85 (462)
Q Consensus 6 ~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~ 85 (462)
|||+++.....| ...+++.|.++||+|++++.....+..... .++.++.++-. .......+
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~~--------~~i~~~~~~~~------~k~~~~~~-- 61 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEII--------EGIKVIRLPSP------RKSPLNYI-- 61 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhHh--------CCeEEEEecCC------CCccHHHH--
Confidence 578887766666 457799999999999999996654333322 38888887532 11122222
Q ss_pred HHHhccHHHHHHHHHHhhccCCCceEEEeCCCcc---hHHHHHHHcC-CceEEEcc
Q 044266 86 MVRVMPEKLEELIENINRLENEKITCVVADGSMG---WVMEVAEKMK-LRRAAFWP 137 (462)
Q Consensus 86 ~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~---~~~~~A~~lg-iP~v~~~~ 137 (462)
.. . .+..+++. .+||+|.+..... .+..++...| +|++....
T Consensus 62 --~~-~-~l~k~ik~------~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~h 107 (139)
T PF13477_consen 62 --KY-F-RLRKIIKK------EKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVH 107 (139)
T ss_pred --HH-H-HHHHHhcc------CCCCEEEEecCChHHHHHHHHHHHcCCCCEEEEec
Confidence 11 1 24444454 8999998876554 2444567788 89986433
No 130
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=96.85 E-value=0.0016 Score=48.75 Aligned_cols=54 Identities=11% Similarity=0.161 Sum_probs=44.5
Q ss_pred CCchhhHhhccCCCCcEEEEeccCcccc---C--HHHHHHHHHHHHhCCCCEEEEEcCC
Q 044266 256 EDSTCLKWLDQQQQNSVIYVAFGSFTVF---D--KEQFQELASGLELTNRPFLWVVRPD 309 (462)
Q Consensus 256 ~~~~~~~~l~~~~~~~~v~vs~Gs~~~~---~--~~~~~~~~~a~~~~~~~~i~~~~~~ 309 (462)
....+..|+...+++|.|+||+||.... . ...+..++++++..+..+|..+...
T Consensus 26 G~~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~ 84 (97)
T PF06722_consen 26 GPAVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAA 84 (97)
T ss_dssp SSEEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTC
T ss_pred CCCCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHH
Confidence 3455668999988999999999998543 2 2478899999999999999998866
No 131
>PHA01633 putative glycosyl transferase group 1
Probab=96.70 E-value=0.016 Score=54.46 Aligned_cols=85 Identities=12% Similarity=0.080 Sum_probs=56.0
Q ss_pred hcCCceee---cccCcc---cccCCCCcccceec---cC-chhhhhhhhcCCceecccc------ccch------hhhHH
Q 044266 326 VATRRQMV---GWAPQQ---KVLTHPSIACFLSH---CG-WNSTMEGVSNGVPFLCWPY------FADQ------FLNES 383 (462)
Q Consensus 326 ~~~~v~~~---~~~pq~---~ll~~~~~~~~I~H---gG-~~sv~eal~~GvP~l~~P~------~~DQ------~~na~ 383 (462)
.++++.+. +++++. .+++.+|+ ||.- =| ..+++||+++|+|+|+--. .+|+ ..++.
T Consensus 199 l~~~V~f~g~~G~~~~~dl~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~ 276 (335)
T PHA01633 199 VPANVHFVAEFGHNSREYIFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVE 276 (335)
T ss_pred CCCcEEEEecCCCCCHHHHHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHH
Confidence 45778887 455543 57888877 8764 24 4578999999999998632 2332 22222
Q ss_pred hHh--hhheeeEEeecCCCCccCHHHHHHHHHHHhcC
Q 044266 384 YIC--DIWKVGLRFNKNKNGIITREEIMKKVDQVLED 418 (462)
Q Consensus 384 ~v~--~~~g~g~~~~~~~~~~~~~~~l~~~i~~ll~~ 418 (462)
... + .|.|..+ ...++++++++|.+++..
T Consensus 277 ~~~~~~-~g~g~~~-----~~~d~~~la~ai~~~~~~ 307 (335)
T PHA01633 277 EYYDKE-HGQKWKI-----HKFQIEDMANAIILAFEL 307 (335)
T ss_pred HhcCcc-cCceeee-----cCCCHHHHHHHHHHHHhc
Confidence 222 2 2666666 348999999999999543
No 132
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.67 E-value=0.16 Score=46.74 Aligned_cols=101 Identities=10% Similarity=0.069 Sum_probs=67.5
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCC--CEEEEEeCCcchHHHHHhhcCCCCCCCCeEE-EEcCCCCCCCCCCCCHHHH
Q 044266 6 HVLAFPYPAQGHVIPLLEISQCLVKHG--VKVTFLNTDYNHKRVVNALGQNNYIGDQIKL-VSIPDGMEPEGDRNDLGML 82 (462)
Q Consensus 6 ~Il~~~~~~~GH~~p~l~La~~L~~rG--h~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~-~~i~~~~~~~~~~~~~~~~ 82 (462)
|||++-..+.|++.-..++.++|+++. -+|++++.+...+.++.. +.+.- +.++... ....
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~~--------p~id~v~~~~~~~----~~~~---- 64 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLELM--------PEVDRVIVLPKKH----GKLG---- 64 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHhcC--------CccCEEEEcCCcc----cccc----
Confidence 688888999999999999999999864 899999999888777665 34432 2222110 0001
Q ss_pred HHHHHHhccHHHHHHHHHHhhccCCCceEEEeCCCcchHHHHHHHcCCceE
Q 044266 83 TKTMVRVMPEKLEELIENINRLENEKITCVVADGSMGWVMEVAEKMKLRRA 133 (462)
Q Consensus 83 ~~~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~~~~~~A~~lgiP~v 133 (462)
-..+.+++..++. .++|+++.-........++...+++..
T Consensus 65 --------~~~~~~~~~~l~~---~~~D~vi~~~~~~~~~~~~~~~~~~~~ 104 (279)
T cd03789 65 --------LGARRRLARALRR---RRYDLAIDLQGSLRSALLPFLAGAPRR 104 (279)
T ss_pred --------hHHHHHHHHHHhh---cCCCEEEECCCccHHHHHHHHhCCCeE
Confidence 1223455566666 899999976655544445555555554
No 133
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=96.62 E-value=0.2 Score=48.02 Aligned_cols=109 Identities=14% Similarity=0.111 Sum_probs=73.8
Q ss_pred CCC-CCEEEEEcCCCccChHHHHHHHHHHHhC--CCEEEEEeCCcchHHHHHhhcCCCCCCCCeEE-EEcCCCCCCCCCC
Q 044266 1 MLR-RPHVLAFPYPAQGHVIPLLEISQCLVKH--GVKVTFLNTDYNHKRVVNALGQNNYIGDQIKL-VSIPDGMEPEGDR 76 (462)
Q Consensus 1 ~~~-~~~Il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~-~~i~~~~~~~~~~ 76 (462)
|.+ ++|||++-....|++.-..++.+.|.++ +.+|++++.+.+.+.++.. +.+.- +.++.. .
T Consensus 1 ~~~~~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~--------P~id~vi~~~~~------~ 66 (352)
T PRK10422 1 MDKPFRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSEN--------PEINALYGIKNK------K 66 (352)
T ss_pred CCCCCceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhccC--------CCceEEEEeccc------c
Confidence 544 5799999999999999999999999985 8999999999888877654 35532 333321 0
Q ss_pred CCHHHHHHHHHHhccHHHHHHHHHHhhccCCCceEEEeCCCcchHHHHHHHcCCceEE
Q 044266 77 NDLGMLTKTMVRVMPEKLEELIENINRLENEKITCVVADGSMGWVMEVAEKMKLRRAA 134 (462)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~~~~~~A~~lgiP~v~ 134 (462)
......+ ..+.++++.++. .++|++|.-........++...|.+..+
T Consensus 67 ~~~~~~~--------~~~~~l~~~lr~---~~yD~vidl~~~~~s~ll~~l~~a~~ri 113 (352)
T PRK10422 67 AGASEKI--------KNFFSLIKVLRA---NKYDLIVNLTDQWMVALLVRLLNARVKI 113 (352)
T ss_pred ccHHHHH--------HHHHHHHHHHhh---CCCCEEEEcccchHHHHHHHHhCCCeEE
Confidence 0111111 123345566666 8999999665444455667777877755
No 134
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=96.52 E-value=0.18 Score=48.05 Aligned_cols=105 Identities=13% Similarity=0.118 Sum_probs=72.7
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhC--CCEEEEEeCCcchHHHHHhhcCCCCCCCCeE-EEEcCCCCCCCCCCCCHHHH
Q 044266 6 HVLAFPYPAQGHVIPLLEISQCLVKH--GVKVTFLNTDYNHKRVVNALGQNNYIGDQIK-LVSIPDGMEPEGDRNDLGML 82 (462)
Q Consensus 6 ~Il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~-~~~i~~~~~~~~~~~~~~~~ 82 (462)
|||++-..+.|++.-..++.+.|.++ +.+|++++.+.+.+.++.. +.+. ++.++..... ..
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~--------p~vd~vi~~~~~~~~-----~~--- 64 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSEN--------PDINALYGLDRKKAK-----AG--- 64 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhcC--------CCccEEEEeChhhhc-----ch---
Confidence 68999999999999999999999984 8999999999888877765 3554 3443321100 00
Q ss_pred HHHHHHhccHHHHHHHHHHhhccCCCceEEEeCCCcchHHHHHHHcCCceEE
Q 044266 83 TKTMVRVMPEKLEELIENINRLENEKITCVVADGSMGWVMEVAEKMKLRRAA 134 (462)
Q Consensus 83 ~~~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~~~~~~A~~lgiP~v~ 134 (462)
...+ ....+++..++. .++|++|.-........++...|.|.-+
T Consensus 65 ~~~~-----~~~~~l~~~lr~---~~yD~vidl~~~~~s~ll~~l~~a~~ri 108 (344)
T TIGR02201 65 ERKL-----ANQFHLIKVLRA---NRYDLVVNLTDQWMVAILVKLLNARVKI 108 (344)
T ss_pred HHHH-----HHHHHHHHHHHh---CCCCEEEECCcchHHHHHHHhcCCCeEE
Confidence 0111 112345566666 8999999765555677788888988755
No 135
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=96.48 E-value=0.54 Score=44.92 Aligned_cols=103 Identities=7% Similarity=-0.010 Sum_probs=72.5
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHh--CCCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEE-cCCCCCCCCCCCCHHH
Q 044266 5 PHVLAFPYPAQGHVIPLLEISQCLVK--HGVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVS-IPDGMEPEGDRNDLGM 81 (462)
Q Consensus 5 ~~Il~~~~~~~GH~~p~l~La~~L~~--rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~-i~~~~~~~~~~~~~~~ 81 (462)
+|||++-..+.|++.-..++.+.|++ .+.+|++++.+.+.+.++.. |.+..+- ++.. . ....
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~--------P~vd~vi~~~~~--~-----~~~~ 65 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSRM--------PEVNEAIPMPLG--H-----GALE 65 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhcC--------CccCEEEecccc--c-----chhh
Confidence 38999999999999999999999998 48999999998888877765 4554322 2211 0 0000
Q ss_pred HHHHHHHhccHHHHHHHHHHhhccCCCceEEEeCCCcchHHHHHHHcCCceEE
Q 044266 82 LTKTMVRVMPEKLEELIENINRLENEKITCVVADGSMGWVMEVAEKMKLRRAA 134 (462)
Q Consensus 82 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~~~~~~A~~lgiP~v~ 134 (462)
+ ....++++.++. .++|++|.=....-...++...|+|.-.
T Consensus 66 ----~-----~~~~~l~~~lr~---~~yD~vidl~~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 66 ----I-----GERRRLGHSLRE---KRYDRAYVLPNSFKSALVPFFAGIPHRT 106 (348)
T ss_pred ----h-----HHHHHHHHHHHh---cCCCEEEECCCcHHHHHHHHHcCCCeEe
Confidence 0 113355566666 8999999765555566677777887654
No 136
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=96.36 E-value=0.39 Score=45.55 Aligned_cols=106 Identities=15% Similarity=0.073 Sum_probs=74.6
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCC--CEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcCCCCCCCCCCCCHHH
Q 044266 4 RPHVLAFPYPAQGHVIPLLEISQCLVKHG--VKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIPDGMEPEGDRNDLGM 81 (462)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~l~La~~L~~rG--h~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~ 81 (462)
++||+++-....|++.=.+.+-+.|+++. .++++++...+.+.+... +.+.-+-.-.. .. .+
T Consensus 1 ~~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~~--------p~I~~vi~~~~--~~---~~--- 64 (334)
T COG0859 1 MMKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKLN--------PEIDKVIIIDK--KK---KG--- 64 (334)
T ss_pred CceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHhcC--------hHhhhhccccc--cc---cc---
Confidence 35999999999999999999999999865 999999999988877665 33332211010 00 00
Q ss_pred HHHHHHHhccHHHHHHHHHHhhccCCCceEEEeCCCcchHHHHHHHcCCceEEE
Q 044266 82 LTKTMVRVMPEKLEELIENINRLENEKITCVVADGSMGWVMEVAEKMKLRRAAF 135 (462)
Q Consensus 82 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~~~~~~A~~lgiP~v~~ 135 (462)
........+.+.++. .++|+||.=....-...++...++|.-.-
T Consensus 65 -------~~~~~~~~l~~~lr~---~~yD~vidl~~~~ksa~l~~~~~~~~r~g 108 (334)
T COG0859 65 -------LGLKERLALLRTLRK---ERYDAVIDLQGLLKSALLALLLGIPFRIG 108 (334)
T ss_pred -------cchHHHHHHHHHhhc---cCCCEEEECcccHHHHHHHHHhCCCcccc
Confidence 111234455666666 89999998877776667777888887763
No 137
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.29 E-value=0.054 Score=53.08 Aligned_cols=104 Identities=17% Similarity=0.250 Sum_probs=72.8
Q ss_pred CCcEEEEeccCccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCcccccCchhHHHH---h---cCCceeecccCcc---
Q 044266 269 QNSVIYVAFGSFTVFDKEQFQELASGLELTNRPFLWVVRPDITNDAIDAYPEGFQDR---V---ATRRQMVGWAPQQ--- 339 (462)
Q Consensus 269 ~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~---~~~v~~~~~~pq~--- 339 (462)
++-+||++|+...+..++.+..=.+-++..+-.++|..+++.+ ..+...+++. . .++.++.+-.|..
T Consensus 428 ~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~----~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h~ 503 (620)
T COG3914 428 EDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDD----AEINARLRDLAEREGVDSERLRFLPPAPNEDHR 503 (620)
T ss_pred CCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCc----HHHHHHHHHHHHHcCCChhheeecCCCCCHHHH
Confidence 4569999999999999999888777777788889998877511 1122222211 1 2456666666643
Q ss_pred cccCCCCccccee---ccCchhhhhhhhcCCceeccccccchhh
Q 044266 340 KVLTHPSIACFLS---HCGWNSTMEGVSNGVPFLCWPYFADQFL 380 (462)
Q Consensus 340 ~ll~~~~~~~~I~---HgG~~sv~eal~~GvP~l~~P~~~DQ~~ 380 (462)
+=+.-+|+ |.- =||+.|..|+|+.|||+|.++ ++|+.
T Consensus 504 a~~~iADl--vLDTyPY~g~TTa~daLwm~vPVlT~~--G~~Fa 543 (620)
T COG3914 504 ARYGIADL--VLDTYPYGGHTTASDALWMGVPVLTRV--GEQFA 543 (620)
T ss_pred Hhhchhhe--eeecccCCCccchHHHHHhcCceeeec--cHHHH
Confidence 44555555 654 599999999999999999874 56653
No 138
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=96.22 E-value=0.053 Score=40.37 Aligned_cols=82 Identities=12% Similarity=0.103 Sum_probs=52.7
Q ss_pred ccCchhhhhhhhcCCceeccccccchhhhHHhHhhhhe-eeEEeecCCCCccCHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 044266 353 HCGWNSTMEGVSNGVPFLCWPYFADQFLNESYICDIWK-VGLRFNKNKNGIITREEIMKKVDQVLEDENFKARALDLKET 431 (462)
Q Consensus 353 HgG~~sv~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g-~g~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~ 431 (462)
+|-...+.|++++|+|+|.-+. ......+.+ | -++.. . +.+++.++|.++++|++.+++..+-+.+
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~~~--~~~~~~~-----~--~~~el~~~i~~ll~~~~~~~~ia~~a~~ 75 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIFED--GEHIITY-----N--DPEELAEKIEYLLENPEERRRIAKNARE 75 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHcCC--CCeEEEE-----C--CHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 5556789999999999998855 333333333 4 33333 2 8999999999999999655444333333
Q ss_pred HHhHhhcCCCcHHHHHHHH
Q 044266 432 SLNSVREGGQSDKTFKNFV 450 (462)
Q Consensus 432 ~~~~~~~~g~~~~~~~~~~ 450 (462)
... +.-+..+-+++++
T Consensus 76 ~v~---~~~t~~~~~~~il 91 (92)
T PF13524_consen 76 RVL---KRHTWEHRAEQIL 91 (92)
T ss_pred HHH---HhCCHHHHHHHHH
Confidence 322 2455555555554
No 139
>PRK14098 glycogen synthase; Provisional
Probab=96.19 E-value=0.06 Score=53.94 Aligned_cols=131 Identities=13% Similarity=0.065 Sum_probs=74.3
Q ss_pred cEEEEeccCccccCHHHHHHHHHHH---HhCCCCEEEEEcCCCCCcccccCchhHHHHhcCCceeecccCcc---cccCC
Q 044266 271 SVIYVAFGSFTVFDKEQFQELASGL---ELTNRPFLWVVRPDITNDAIDAYPEGFQDRVATRRQMVGWAPQQ---KVLTH 344 (462)
Q Consensus 271 ~~v~vs~Gs~~~~~~~~~~~~~~a~---~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~---~ll~~ 344 (462)
..+++..|.... .+.+..+++++ ...+.++++.-.+. . .....-..+.++.++++.+.+.++.. .+++.
T Consensus 307 ~~~i~~vgRl~~--~KG~d~li~a~~~l~~~~~~lvivG~G~--~-~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~~a~ 381 (489)
T PRK14098 307 TPLVGVIINFDD--FQGAELLAESLEKLVELDIQLVICGSGD--K-EYEKRFQDFAEEHPEQVSVQTEFTDAFFHLAIAG 381 (489)
T ss_pred CCEEEEeccccc--cCcHHHHHHHHHHHHhcCcEEEEEeCCC--H-HHHHHHHHHHHHCCCCEEEEEecCHHHHHHHHHh
Confidence 356666676643 22333344443 33355555543322 0 00000112223346788888888864 58888
Q ss_pred CCcccceecc---Cc-hhhhhhhhcCCceecccccc--chhhhHHhHhhhheeeEEeecCCCCccCHHHHHHHHHHHh
Q 044266 345 PSIACFLSHC---GW-NSTMEGVSNGVPFLCWPYFA--DQFLNESYICDIWKVGLRFNKNKNGIITREEIMKKVDQVL 416 (462)
Q Consensus 345 ~~~~~~I~Hg---G~-~sv~eal~~GvP~l~~P~~~--DQ~~na~~v~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ll 416 (462)
+|+ ++.-. |. .+.+||+.+|+|.|+....+ |...+ ..++. +.|..++ ..+++++.++|.+++
T Consensus 382 aDi--~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~--~~~~~-~~G~l~~-----~~d~~~la~ai~~~l 449 (489)
T PRK14098 382 LDM--LLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEE--VSEDK-GSGFIFH-----DYTPEALVAKLGEAL 449 (489)
T ss_pred CCE--EEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeec--CCCCC-CceeEeC-----CCCHHHHHHHHHHHH
Confidence 887 77543 22 37789999999888875432 22111 11222 6777774 368999999999876
No 140
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=96.09 E-value=0.54 Score=43.86 Aligned_cols=57 Identities=12% Similarity=0.074 Sum_probs=40.1
Q ss_pred CcccccCCCCcccceeccC-chhhhhhhhcCCceeccccccchhh----hHHhHhhhheeeEEeec
Q 044266 337 PQQKVLTHPSIACFLSHCG-WNSTMEGVSNGVPFLCWPYFADQFL----NESYICDIWKVGLRFNK 397 (462)
Q Consensus 337 pq~~ll~~~~~~~~I~HgG-~~sv~eal~~GvP~l~~P~~~DQ~~----na~~v~~~~g~g~~~~~ 397 (462)
|+..+|+.++. +|.-+. .+=+.||+..|+|+.++|+-. +.. ..+.+++. |+-..+..
T Consensus 221 Py~~~La~ad~--i~VT~DSvSMvsEA~~tG~pV~v~~l~~-~~~r~~r~~~~L~~~-g~~r~~~~ 282 (311)
T PF06258_consen 221 PYLGFLAAADA--IVVTEDSVSMVSEAAATGKPVYVLPLPG-RSGRFRRFHQSLEER-GAVRPFTG 282 (311)
T ss_pred cHHHHHHhCCE--EEEcCccHHHHHHHHHcCCCEEEecCCC-cchHHHHHHHHHHHC-CCEEECCC
Confidence 56678888886 555555 666889999999999998875 221 33455663 77777753
No 141
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=96.06 E-value=0.58 Score=44.39 Aligned_cols=102 Identities=10% Similarity=0.075 Sum_probs=70.0
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhC--CCEEEEEeCCcchHHHHHhhcCCCCCCCCeEE-EEcCCCCCCCCCCCCHHHH
Q 044266 6 HVLAFPYPAQGHVIPLLEISQCLVKH--GVKVTFLNTDYNHKRVVNALGQNNYIGDQIKL-VSIPDGMEPEGDRNDLGML 82 (462)
Q Consensus 6 ~Il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~-~~i~~~~~~~~~~~~~~~~ 82 (462)
|||++-..+.|++.-..++.+.|.+. +.+|++++.+.+.+.++.. +.+.- +.++.. . ....
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~--------p~id~v~~~~~~--~-----~~~~- 64 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLERM--------PEIRQAIDMPLG--H-----GALE- 64 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHhcC--------chhceeeecCCc--c-----cchh-
Confidence 68999999999999999999999985 8999999998887777655 34432 222211 0 0000
Q ss_pred HHHHHHhccHHHHHHHHHHhhccCCCceEEEeCCCcchHHHHHHHcCCceEE
Q 044266 83 TKTMVRVMPEKLEELIENINRLENEKITCVVADGSMGWVMEVAEKMKLRRAA 134 (462)
Q Consensus 83 ~~~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~~~~~~A~~lgiP~v~ 134 (462)
+ ....++++.++. .++|++|.-....-...++...|+|.-.
T Consensus 65 ---~-----~~~~~~~~~lr~---~~yD~vi~l~~~~~s~ll~~~~~~~~ri 105 (334)
T TIGR02195 65 ---L-----TERRRLGRSLRE---ERYDQAIVLPNSLKSALIPFFAGIPHRT 105 (334)
T ss_pred ---h-----hHHHHHHHHHhh---cCCCEEEECCCCHHHHHHHHHcCCCcee
Confidence 0 112345566665 8999999876666666677777887643
No 142
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.04 E-value=0.095 Score=51.76 Aligned_cols=172 Identities=17% Similarity=0.245 Sum_probs=102.9
Q ss_pred CCcEEEEeccCccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCcccccCchhHHHH------hcCCceeecccCcc---
Q 044266 269 QNSVIYVAFGSFTVFDKEQFQELASGLELTNRPFLWVVRPDITNDAIDAYPEGFQDR------VATRRQMVGWAPQQ--- 339 (462)
Q Consensus 269 ~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~~~~pq~--- 339 (462)
+.-+||.+|.-..+.+++.++.-++.+...+-.++|........+ ..|... .++++.+.+-++-.
T Consensus 757 ~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge------~rf~ty~~~~Gl~p~riifs~va~k~eHv 830 (966)
T KOG4626|consen 757 EDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGE------QRFRTYAEQLGLEPDRIIFSPVAAKEEHV 830 (966)
T ss_pred CCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccch------HHHHHHHHHhCCCccceeeccccchHHHH
Confidence 345999999888889999988888888888889999987652211 122211 14555555444421
Q ss_pred --cccCCCCcccceeccCchhhhhhhhcCCceecccccc-chhhhHHhHhhhheeeEEeecCCCCccCHHHHHHHHHHHh
Q 044266 340 --KVLTHPSIACFLSHCGWNSTMEGVSNGVPFLCWPYFA-DQFLNESYICDIWKVGLRFNKNKNGIITREEIMKKVDQVL 416 (462)
Q Consensus 340 --~ll~~~~~~~~I~HgG~~sv~eal~~GvP~l~~P~~~-DQ~~na~~v~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ll 416 (462)
-.|..-.++-+.+. |..|.++.||.|+|||.+|.-. -...-+-.+.. +|+|-.+.. +.++-.+.--++=
T Consensus 831 rr~~LaDv~LDTplcn-GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~-~Gl~hliak------~~eEY~~iaV~La 902 (966)
T KOG4626|consen 831 RRGQLADVCLDTPLCN-GHTTGMDVLWAGVPMVTMPGETLASRVAASLLTA-LGLGHLIAK------NREEYVQIAVRLA 902 (966)
T ss_pred HhhhhhhhcccCcCcC-CcccchhhhccCCceeecccHHHHHHHHHHHHHH-cccHHHHhh------hHHHHHHHHHHhh
Confidence 23433334446664 6789999999999999999643 23333344455 799986642 4555444444555
Q ss_pred cCHHHHHHHHHHHHHHHhHhh----cCCCc-HHHHHHHHHHHHhhh
Q 044266 417 EDENFKARALDLKETSLNSVR----EGGQS-DKTFKNFVQWIKAEA 457 (462)
Q Consensus 417 ~~~~~~~~a~~l~~~~~~~~~----~~g~~-~~~~~~~~~~~~~~~ 457 (462)
.|.++-. .+..+++++.. -++.+ .+.++++...|++..
T Consensus 903 td~~~L~---~lr~~l~~~r~~splfd~~q~~~~LE~~y~~MW~~y 945 (966)
T KOG4626|consen 903 TDKEYLK---KLRAKLRKARASSPLFDTKQYAKGLERLYLQMWKKY 945 (966)
T ss_pred cCHHHHH---HHHHHHHHHhcCCCccCchHHHHHHHHHHHHHHHHh
Confidence 5655433 23333333311 12222 556777776666543
No 143
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=96.01 E-value=0.0093 Score=49.37 Aligned_cols=97 Identities=18% Similarity=0.211 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHhccHHHHHHHH
Q 044266 20 PLLEISQCLVKHGVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIPDGMEPEGDRNDLGMLTKTMVRVMPEKLEELIE 99 (462)
Q Consensus 20 p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 99 (462)
-+..|+++|.++||+|+++++......-... ..++.++.++-..... .......+ ..+.+++
T Consensus 6 ~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~-----~~~~~~~~-----~~~~~~l- 67 (160)
T PF13579_consen 6 YVRELARALAARGHEVTVVTPQPDPEDDEEE-------EDGVRVHRLPLPRRPW-----PLRLLRFL-----RRLRRLL- 67 (160)
T ss_dssp HHHHHHHHHHHTT-EEEEEEE---GGG-SEE-------ETTEEEEEE--S-SSS-----GGGHCCHH-----HHHHHHC-
T ss_pred HHHHHHHHHHHCCCEEEEEecCCCCcccccc-------cCCceEEeccCCccch-----hhhhHHHH-----HHHHHHH-
Confidence 4678999999999999999976654422111 1378888776221111 10011111 1233333
Q ss_pred HHhhccCCCceEEEeCCCcc-hHHHHHH-HcCCceEEEcc
Q 044266 100 NINRLENEKITCVVADGSMG-WVMEVAE-KMKLRRAAFWP 137 (462)
Q Consensus 100 ~l~~~~~~~~Dlvi~D~~~~-~~~~~A~-~lgiP~v~~~~ 137 (462)
..+. .+||+|.+..... ....+++ ..++|++....
T Consensus 68 ~~~~---~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h 104 (160)
T PF13579_consen 68 AARR---ERPDVVHAHSPTAGLVAALARRRRGIPLVVTVH 104 (160)
T ss_dssp HHCT------SEEEEEHHHHHHHHHHHHHHHT--EEEE-S
T ss_pred hhhc---cCCeEEEecccchhHHHHHHHHccCCcEEEEEC
Confidence 1133 8999999886433 3334445 78999998554
No 144
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=95.96 E-value=0.057 Score=45.17 Aligned_cols=95 Identities=9% Similarity=0.067 Sum_probs=58.3
Q ss_pred hCCCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHhccHHHHHHHHHHhhccCCCc
Q 044266 30 KHGVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIPDGMEPEGDRNDLGMLTKTMVRVMPEKLEELIENINRLENEKI 109 (462)
Q Consensus 30 ~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 109 (462)
++||+|+|++........ +|++...+...-.......-....++........ +.+.+..|++.. ..|
T Consensus 1 q~gh~v~fl~~~~~~~~~-----------~GV~~~~y~~~~~~~~~~~~~~~~~e~~~~rg~a-v~~a~~~L~~~G-f~P 67 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPPIP-----------PGVRVVRYRPPRGPTPGTHPYVRDFEAAVLRGQA-VARAARQLRAQG-FVP 67 (171)
T ss_pred CCCCEEEEEecCCCCCCC-----------CCcEEEEeCCCCCCCCCCCcccccHHHHHHHHHH-HHHHHHHHHHcC-CCC
Confidence 479999999965443322 2777777764222221111112222222222222 334445555543 899
Q ss_pred eEEEeCCCcchHHHHHHHc-CCceEEEcc
Q 044266 110 TCVVADGSMGWVMEVAEKM-KLRRAAFWP 137 (462)
Q Consensus 110 Dlvi~D~~~~~~~~~A~~l-giP~v~~~~ 137 (462)
|+|+..+..-.++.+-+.+ ++|.+.++=
T Consensus 68 DvI~~H~GWGe~Lflkdv~P~a~li~Y~E 96 (171)
T PF12000_consen 68 DVIIAHPGWGETLFLKDVFPDAPLIGYFE 96 (171)
T ss_pred CEEEEcCCcchhhhHHHhCCCCcEEEEEE
Confidence 9999999888999999999 999998754
No 145
>PHA01630 putative group 1 glycosyl transferase
Probab=95.50 E-value=0.5 Score=44.71 Aligned_cols=108 Identities=14% Similarity=0.065 Sum_probs=59.2
Q ss_pred cccCcc---cccCCCCccccee---ccC-chhhhhhhhcCCceecccccc--chhh---hHHhHhhh----------hee
Q 044266 334 GWAPQQ---KVLTHPSIACFLS---HCG-WNSTMEGVSNGVPFLCWPYFA--DQFL---NESYICDI----------WKV 391 (462)
Q Consensus 334 ~~~pq~---~ll~~~~~~~~I~---HgG-~~sv~eal~~GvP~l~~P~~~--DQ~~---na~~v~~~----------~g~ 391 (462)
.++|+. .+++.+|+ +|. ..| ..+++||+++|+|+|+.-..+ |... |.-.+... .++
T Consensus 196 ~~v~~~~l~~~y~~aDv--~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~~~ 273 (331)
T PHA01630 196 TPLPDDDIYSLFAGCDI--LFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPIHV 273 (331)
T ss_pred ccCCHHHHHHHHHhCCE--EEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCccc
Confidence 346654 36878777 653 233 458999999999999975432 3221 11111100 023
Q ss_pred eEEeecCCCCccCHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHhHhhcCCCcHHHHHHHHHHH
Q 044266 392 GLRFNKNKNGIITREEIMKKVDQVLED---ENFKARALDLKETSLNSVREGGQSDKTFKNFVQWI 453 (462)
Q Consensus 392 g~~~~~~~~~~~~~~~l~~~i~~ll~~---~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 453 (462)
|..++ .+.+++.+++.+++.| ++.+++...-+....+ .-+-.+..+++.+.+
T Consensus 274 G~~v~------~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~----~fs~~~ia~k~~~l~ 328 (331)
T PHA01630 274 GYFLD------PDIEDAYQKLLEALANWTPEKKKENLEGRAILYRE----NYSYNAIAKMWEKIL 328 (331)
T ss_pred ccccC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHH
Confidence 44442 3678888888888887 4555544444333332 234344444444443
No 146
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.29 E-value=2.4 Score=39.24 Aligned_cols=125 Identities=12% Similarity=0.059 Sum_probs=76.0
Q ss_pred CCCCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcch--HHHHHhhcCCCCCCCCeEEEEcCCCCCCCCCCCCH
Q 044266 2 LRRPHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNH--KRVVNALGQNNYIGDQIKLVSIPDGMEPEGDRNDL 79 (462)
Q Consensus 2 ~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~--~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~ 79 (462)
.++.|+.++-.|..||--.+.-=|..|++.|.+|.+++..... +.+.+. ++++++.++.--.......-.
T Consensus 10 ~~k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~e~l~~h--------prI~ih~m~~l~~~~~~p~~~ 81 (444)
T KOG2941|consen 10 SKKKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPLEELLNH--------PRIRIHGMPNLPFLQGGPRVL 81 (444)
T ss_pred cccceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCChHHHhcC--------CceEEEeCCCCcccCCCchhh
Confidence 4567888888899999999999999999999999999976543 333333 599999988533222112122
Q ss_pred HHHHHHHHHhccHHHHHHHHHHhhccCCCceEEEeCC-CcchHHHHHH----HcCCceEEEccchhH
Q 044266 80 GMLTKTMVRVMPEKLEELIENINRLENEKITCVVADG-SMGWVMEVAE----KMKLRRAAFWPAAAG 141 (462)
Q Consensus 80 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~-~~~~~~~~A~----~lgiP~v~~~~~~~~ 141 (462)
.-.++.+... ...+-.+... .++|.+++-. -......++. -.|..+++=|....+
T Consensus 82 ~l~lKvf~Qf-l~Ll~aL~~~------~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Y 141 (444)
T KOG2941|consen 82 FLPLKVFWQF-LSLLWALFVL------RPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGY 141 (444)
T ss_pred hhHHHHHHHH-HHHHHHHHhc------cCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHH
Confidence 2223333222 1123333332 7889888653 3334444433 336777775554443
No 147
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=94.77 E-value=2.6 Score=37.52 Aligned_cols=95 Identities=21% Similarity=0.315 Sum_probs=56.8
Q ss_pred HHHHHHhCCCCEEEEEcCCCCCcccccCchhHHHHhcCC-----cee-----ecccCcccccCCCCcccceecc-Cchhh
Q 044266 291 LASGLELTNRPFLWVVRPDITNDAIDAYPEGFQDRVATR-----RQM-----VGWAPQQKVLTHPSIACFLSHC-GWNST 359 (462)
Q Consensus 291 ~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----v~~-----~~~~pq~~ll~~~~~~~~I~Hg-G~~sv 359 (462)
+.+.+++.|..+++++.... |+.....+..| +.+ +++=|+.++|+.+|. +|.-. -.|-.
T Consensus 189 l~k~l~~~g~~~lisfSRRT--------p~~~~s~l~~~l~s~~~i~w~~~d~g~NPY~~~La~Ady--ii~TaDSinM~ 258 (329)
T COG3660 189 LVKILENQGGSFLISFSRRT--------PDTVKSILKNNLNSSPGIVWNNEDTGYNPYIDMLAAADY--IISTADSINMC 258 (329)
T ss_pred HHHHHHhCCceEEEEeecCC--------cHHHHHHHHhccccCceeEeCCCCCCCCchHHHHhhcce--EEEecchhhhh
Confidence 55667888999999887651 22222222221 112 255688999987775 65544 46778
Q ss_pred hhhhhcCCceecc--ccc-cchhh-hHHhHhhhheeeEEee
Q 044266 360 MEGVSNGVPFLCW--PYF-ADQFL-NESYICDIWKVGLRFN 396 (462)
Q Consensus 360 ~eal~~GvP~l~~--P~~-~DQ~~-na~~v~~~~g~g~~~~ 396 (462)
.||...|+|+-++ |.+ .+.+. .-..++| .|+++-..
T Consensus 259 sEAasTgkPv~~~~~~~~~s~K~r~Fi~~L~e-q~~AR~f~ 298 (329)
T COG3660 259 SEAASTGKPVFILEPPNFNSLKFRIFIEQLVE-QKIARPFE 298 (329)
T ss_pred HHHhccCCCeEEEecCCcchHHHHHHHHHHHH-hhhccccC
Confidence 8999999999654 444 22222 3334444 36665553
No 148
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=93.69 E-value=0.25 Score=48.97 Aligned_cols=101 Identities=11% Similarity=0.086 Sum_probs=67.9
Q ss_pred cccCcc---cccCCCCccccee---ccCch-hhhhhhhcCCc----eeccccccchhhhHHhHhhhheeeEEeecCCCCc
Q 044266 334 GWAPQQ---KVLTHPSIACFLS---HCGWN-STMEGVSNGVP----FLCWPYFADQFLNESYICDIWKVGLRFNKNKNGI 402 (462)
Q Consensus 334 ~~~pq~---~ll~~~~~~~~I~---HgG~~-sv~eal~~GvP----~l~~P~~~DQ~~na~~v~~~~g~g~~~~~~~~~~ 402 (462)
+.+++. +++..+|+ ++. +=|+| ++.|++++|+| +|+--..+- +.. ++-|+.++ .
T Consensus 342 ~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~----~~~----l~~gllVn-----P 406 (456)
T TIGR02400 342 RSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGA----AQE----LNGALLVN-----P 406 (456)
T ss_pred CCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCCCC----hHH----hCCcEEEC-----C
Confidence 556665 46778887 775 34655 77899999999 655544332 222 23466664 3
Q ss_pred cCHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHhHhhcCCCcHHHHHHHHHHHH
Q 044266 403 ITREEIMKKVDQVLEDE--NFKARALDLKETSLNSVREGGQSDKTFKNFVQWIK 454 (462)
Q Consensus 403 ~~~~~l~~~i~~ll~~~--~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 454 (462)
.+.++++++|.++|+++ +-+++.+.+.+.... -+...-.++|++++.
T Consensus 407 ~d~~~lA~aI~~aL~~~~~er~~r~~~~~~~v~~-----~~~~~W~~~~l~~l~ 455 (456)
T TIGR02400 407 YDIDGMADAIARALTMPLEEREERHRAMMDKLRK-----NDVQRWREDFLSDLN 455 (456)
T ss_pred CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh-----CCHHHHHHHHHHHhh
Confidence 68999999999999854 566667777776654 355666777777653
No 149
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=93.39 E-value=0.29 Score=41.03 Aligned_cols=101 Identities=21% Similarity=0.241 Sum_probs=51.3
Q ss_pred CccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHhccHH
Q 044266 14 AQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIPDGMEPEGDRNDLGMLTKTMVRVMPEK 93 (462)
Q Consensus 14 ~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (462)
..|=-.-...|+++|+++||+|+++++.......... ......... .. ..... ..+.. ...
T Consensus 11 ~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~~---------~~~~~~~~~--~~---~~~~~---~~~~~--~~~ 71 (177)
T PF13439_consen 11 IGGAERVVLNLARALAKRGHEVTVVSPGVKDPIEEEL---------VKIFVKIPY--PI---RKRFL---RSFFF--MRR 71 (177)
T ss_dssp SSHHHHHHHHHHHHHHHTT-EEEEEESS-TTS-SSTE---------EEE---TT---SS---TSS-----HHHHH--HHH
T ss_pred CChHHHHHHHHHHHHHHCCCEEEEEEcCCCccchhhc---------cceeeeeec--cc---ccccc---hhHHH--HHH
Confidence 4466678899999999999999999876543322110 011111110 00 11111 11111 123
Q ss_pred HHHHHHHHhhccCCCceEEEeCCCcc-hHHHHHHHcCCceEEEccchh
Q 044266 94 LEELIENINRLENEKITCVVADGSMG-WVMEVAEKMKLRRAAFWPAAA 140 (462)
Q Consensus 94 ~~~l~~~l~~~~~~~~Dlvi~D~~~~-~~~~~A~~lgiP~v~~~~~~~ 140 (462)
+.++++. .+||+|-+..... +....+-. ++|.+.......
T Consensus 72 ~~~~i~~------~~~DiVh~~~~~~~~~~~~~~~-~~~~v~~~H~~~ 112 (177)
T PF13439_consen 72 LRRLIKK------EKPDIVHIHGPPAFWIALLACR-KVPIVYTIHGPY 112 (177)
T ss_dssp HHHHHHH------HT-SEEECCTTHCCCHHHHHHH-CSCEEEEE-HHH
T ss_pred HHHHHHH------cCCCeEEecccchhHHHHHhcc-CCCEEEEeCCCc
Confidence 4455555 8999996665444 33333333 999998766554
No 150
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=93.27 E-value=0.75 Score=45.80 Aligned_cols=102 Identities=14% Similarity=0.127 Sum_probs=61.4
Q ss_pred eecccCcc---cccCCCCccccee---ccCch-hhhhhhhcCCc----eeccccccchhhhHHhHhhhheeeEEeecCCC
Q 044266 332 MVGWAPQQ---KVLTHPSIACFLS---HCGWN-STMEGVSNGVP----FLCWPYFADQFLNESYICDIWKVGLRFNKNKN 400 (462)
Q Consensus 332 ~~~~~pq~---~ll~~~~~~~~I~---HgG~~-sv~eal~~GvP----~l~~P~~~DQ~~na~~v~~~~g~g~~~~~~~~ 400 (462)
+.+++++. +++..+|+ +|. +-|+| +++||+++|+| +|+--..+ .+ +. ..-|..++
T Consensus 345 ~~g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G----~~---~~-~~~g~lv~---- 410 (460)
T cd03788 345 LYRSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAG----AA---EE-LSGALLVN---- 410 (460)
T ss_pred EeCCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEecccc----ch---hh-cCCCEEEC----
Confidence 34777765 46888887 663 44554 77999999999 44442221 11 11 12356663
Q ss_pred CccCHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHhHhhcCCCcHHHHHHHHHHH
Q 044266 401 GIITREEIMKKVDQVLEDE--NFKARALDLKETSLNSVREGGQSDKTFKNFVQWI 453 (462)
Q Consensus 401 ~~~~~~~l~~~i~~ll~~~--~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 453 (462)
..+.++++++|.++++++ +-+++.+...+...+ -+...-.+++++++
T Consensus 411 -p~d~~~la~ai~~~l~~~~~e~~~~~~~~~~~v~~-----~~~~~w~~~~l~~l 459 (460)
T cd03788 411 -PYDIDEVADAIHRALTMPLEERRERHRKLREYVRT-----HDVQAWANSFLDDL 459 (460)
T ss_pred -CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-----CCHHHHHHHHHHhh
Confidence 368999999999999865 233333333333332 35555566666654
No 151
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=93.16 E-value=0.83 Score=38.41 Aligned_cols=114 Identities=11% Similarity=0.146 Sum_probs=62.0
Q ss_pred EcCCCccChHHHHHHHHHH-Hh-CCCEEEEEeCCcch--HHHHHhhcCCCCCCCCeEEEEcCCCCCCCCC-CCCHHHHHH
Q 044266 10 FPYPAQGHVIPLLEISQCL-VK-HGVKVTFLNTDYNH--KRVVNALGQNNYIGDQIKLVSIPDGMEPEGD-RNDLGMLTK 84 (462)
Q Consensus 10 ~~~~~~GH~~p~l~La~~L-~~-rGh~Vt~~~~~~~~--~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~-~~~~~~~~~ 84 (462)
+-.++.||+.-++.|.+.+ .+ ..++..+++..... +.++....... ....+..+|........ ..+....+.
T Consensus 3 ~v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~~~~---~~~~~~~~~r~r~v~q~~~~~~~~~l~ 79 (170)
T PF08660_consen 3 VVLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEKSSS---KRHKILEIPRAREVGQSYLTSIFTTLR 79 (170)
T ss_pred EEEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHHhcc---ccceeeccceEEEechhhHhhHHHHHH
Confidence 3358999999999999999 33 45777777766543 22322211100 01134444432211110 112222222
Q ss_pred HHHHhccHHHHHHHHHHhhccCCCceEEEeCCCcc--hHHHHHHHc------CCceEEEcc
Q 044266 85 TMVRVMPEKLEELIENINRLENEKITCVVADGSMG--WVMEVAEKM------KLRRAAFWP 137 (462)
Q Consensus 85 ~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~--~~~~~A~~l------giP~v~~~~ 137 (462)
.+. ..+..+.+ .+||+||+..-.. ....+|.-+ |.+.|.+-+
T Consensus 80 ~~~--------~~~~il~r---~rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES 129 (170)
T PF08660_consen 80 AFL--------QSLRILRR---ERPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIES 129 (170)
T ss_pred HHH--------HHHHHHHH---hCCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEe
Confidence 221 12222233 7999999998655 556778888 899988644
No 152
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=92.01 E-value=0.29 Score=49.25 Aligned_cols=88 Identities=17% Similarity=0.294 Sum_probs=62.7
Q ss_pred CCceeecccC--cc-cccCCCCcccceecc---CchhhhhhhhcCCceeccccccchhhhHHhHhhhheeeEEeecCCCC
Q 044266 328 TRRQMVGWAP--QQ-KVLTHPSIACFLSHC---GWNSTMEGVSNGVPFLCWPYFADQFLNESYICDIWKVGLRFNKNKNG 401 (462)
Q Consensus 328 ~~v~~~~~~p--q~-~ll~~~~~~~~I~Hg---G~~sv~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~g~~~~~~~~~ 401 (462)
..|.+.++.. +. .++..+.+ +|.=+ |.++.+||+.+|+|+| .......|+.. .=|..+.
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl--~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V~d~-~NG~li~----- 473 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRL--IIDLSKEPDLYTQISGISAGIPQI-------NKVETDYVEHN-KNGYIID----- 473 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheE--EEECCCCCChHHHHHHHHcCCCee-------ecCCceeeEcC-CCcEEeC-----
Confidence 5677888888 42 57767665 88766 6779999999999999 33345556653 6666662
Q ss_pred ccCHHHHHHHHHHHhcCHH----HHHHHHHHHHHH
Q 044266 402 IITREEIMKKVDQVLEDEN----FKARALDLKETS 432 (462)
Q Consensus 402 ~~~~~~l~~~i~~ll~~~~----~~~~a~~l~~~~ 432 (462)
+..+|.++|..+|.+++ +...+-+.++++
T Consensus 474 --d~~~l~~al~~~L~~~~~wn~~~~~sy~~~~~y 506 (519)
T TIGR03713 474 --DISELLKALDYYLDNLKNWNYSLAYSIKLIDDY 506 (519)
T ss_pred --CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Confidence 78999999999999984 344444444433
No 153
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=91.28 E-value=1.9 Score=38.77 Aligned_cols=115 Identities=16% Similarity=0.105 Sum_probs=62.1
Q ss_pred CCCCEEEEEcCCCccCh-HHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcCCC-CCCCC-CCCC
Q 044266 2 LRRPHVLAFPYPAQGHV-IPLLEISQCLVKHGVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIPDG-MEPEG-DRND 78 (462)
Q Consensus 2 ~~~~~Il~~~~~~~GH~-~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~-~~~~~-~~~~ 78 (462)
.++||||+.- .-|-- --+..|+++|.+.| +|+++.+...+....... .....+++..+... -.... ....
T Consensus 3 ~~~M~ILltN--DDGi~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~ai----t~~~pl~~~~~~~~~~~~~y~v~GT 75 (257)
T PRK13932 3 DKKPHILVCN--DDGIEGEGIHVLAASMKKIG-RVTVVAPAEPHSGMSHAM----TLGVPLRIKEYQKNNRFFGYTVSGT 75 (257)
T ss_pred CCCCEEEEEC--CCCCCCHHHHHHHHHHHhCC-CEEEEcCCCCCCCCcccc----cCCCCeEEEEEccCCCceEEEEcCc
Confidence 3577988754 33333 34778899998878 799999887665433221 11124555554311 00001 1112
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHhhccCCCceEEEeCC----------Ccc---hHHHHHHHcCCceEEEcc
Q 044266 79 LGMLTKTMVRVMPEKLEELIENINRLENEKITCVVADG----------SMG---WVMEVAEKMKLRRAAFWP 137 (462)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~----------~~~---~~~~~A~~lgiP~v~~~~ 137 (462)
+......- +..+-. .+||+||+-. ++. .+..-|..+|||.+.++.
T Consensus 76 PaDCV~la-----------l~~~~~---~~pDLVvSGIN~G~N~G~dv~ySGTVgAA~Ea~~~GiPsIA~S~ 133 (257)
T PRK13932 76 PVDCIKVA-----------LSHILP---EKPDLIVSGINYGSNTATNTLYSGTVAAALEGAIQGIPSLAFSL 133 (257)
T ss_pred HHHHHHHH-----------HHhhcC---CCCCEEEECCcCCCCCCcCEecchhHHHHHHHHHcCCCeEEEEc
Confidence 22221111 122222 6899999743 222 345557778999999875
No 154
>PLN02939 transferase, transferring glycosyl groups
Probab=90.99 E-value=6.6 Score=42.20 Aligned_cols=91 Identities=8% Similarity=0.121 Sum_probs=58.5
Q ss_pred cCCceeecccCcc---cccCCCCcccceecc---C-chhhhhhhhcCCceecccccc--chhhh--HHhH-hhhheeeEE
Q 044266 327 ATRRQMVGWAPQQ---KVLTHPSIACFLSHC---G-WNSTMEGVSNGVPFLCWPYFA--DQFLN--ESYI-CDIWKVGLR 394 (462)
Q Consensus 327 ~~~v~~~~~~pq~---~ll~~~~~~~~I~Hg---G-~~sv~eal~~GvP~l~~P~~~--DQ~~n--a~~v-~~~~g~g~~ 394 (462)
.++|.+..+.+.. .+++.+|+ ||.-. | -.+++||+.+|+|.|+....+ |...+ ...+ ++ -+-|..
T Consensus 836 ~drV~FlG~~de~lah~IYAaADI--FLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~e-g~NGfL 912 (977)
T PLN02939 836 NNNIRLILKYDEALSHSIYAASDM--FIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVE-LRNGFT 912 (977)
T ss_pred CCeEEEEeccCHHHHHHHHHhCCE--EEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccC-CCceEE
Confidence 4578888888764 48888777 88532 2 348999999999998876543 22111 0011 12 256777
Q ss_pred eecCCCCccCHHHHHHHHHHHhc----CHHHHHHH
Q 044266 395 FNKNKNGIITREEIMKKVDQVLE----DENFKARA 425 (462)
Q Consensus 395 ~~~~~~~~~~~~~l~~~i~~ll~----~~~~~~~a 425 (462)
++ ..+++.+.++|.+++. |++.+++.
T Consensus 913 f~-----~~D~eaLa~AL~rAL~~~~~dpe~~~~L 942 (977)
T PLN02939 913 FL-----TPDEQGLNSALERAFNYYKRKPEVWKQL 942 (977)
T ss_pred ec-----CCCHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 74 2588999999988774 56544433
No 155
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=90.56 E-value=14 Score=34.21 Aligned_cols=88 Identities=19% Similarity=0.329 Sum_probs=57.3
Q ss_pred CCceeecccCc---ccccCCCCcccceec---cCchh-hhhhhhcCCceeccccccchhhhHHhHhhhheeeEEeecCCC
Q 044266 328 TRRQMVGWAPQ---QKVLTHPSIACFLSH---CGWNS-TMEGVSNGVPFLCWPYFADQFLNESYICDIWKVGLRFNKNKN 400 (462)
Q Consensus 328 ~~v~~~~~~pq---~~ll~~~~~~~~I~H---gG~~s-v~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~g~~~~~~~~ 400 (462)
+++.+.+++++ ..+++.+++ ++.- .|.|. +.||+++|+|++.... ......+.+ .+.|. +.
T Consensus 257 ~~v~~~g~~~~~~~~~~~~~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~----~~~~e~~~~-~~~g~-~~---- 324 (381)
T COG0438 257 DNVKFLGYVPDEELAELLASADV--FVLPSLSEGFGLVLLEAMAAGTPVIASDV----GGIPEVVED-GETGL-LV---- 324 (381)
T ss_pred CcEEEecccCHHHHHHHHHhCCE--EEeccccccchHHHHHHHhcCCcEEECCC----CChHHHhcC-CCceE-ec----
Confidence 67778899982 346766666 6665 35544 5999999999976643 333333343 12466 32
Q ss_pred CccCHHHHHHHHHHHhcCHHHHHHHHH
Q 044266 401 GIITREEIMKKVDQVLEDENFKARALD 427 (462)
Q Consensus 401 ~~~~~~~l~~~i~~ll~~~~~~~~a~~ 427 (462)
...+.+++.+++..++++.+.++....
T Consensus 325 ~~~~~~~~~~~i~~~~~~~~~~~~~~~ 351 (381)
T COG0438 325 PPGDVEELADALEQLLEDPELREELGE 351 (381)
T ss_pred CCCCHHHHHHHHHHHhcCHHHHHHHHH
Confidence 222789999999999998854444443
No 156
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=90.07 E-value=3.4 Score=30.46 Aligned_cols=79 Identities=16% Similarity=0.185 Sum_probs=49.0
Q ss_pred HHHHHHHHHhCCCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHhccHHHHHHHHH
Q 044266 21 LLEISQCLVKHGVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIPDGMEPEGDRNDLGMLTKTMVRVMPEKLEELIEN 100 (462)
Q Consensus 21 ~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 100 (462)
++.+++.|.+.|++|. +++...+.+++. |+.+..+......+ .+ .+++.
T Consensus 2 ~~~~~~~l~~lG~~i~--AT~gTa~~L~~~---------Gi~~~~~~~ki~~~-----------------~~---~i~~~ 50 (90)
T smart00851 2 LVELAKRLAELGFELV--ATGGTAKFLREA---------GLPVKTLHPKVHGG-----------------IL---AILDL 50 (90)
T ss_pred HHHHHHHHHHCCCEEE--EccHHHHHHHHC---------CCcceeccCCCCCC-----------------CH---HHHHH
Confidence 4689999999999983 455677788776 77653211100000 01 23444
Q ss_pred HhhccCCCceEEEeCCCc---------chHHHHHHHcCCceE
Q 044266 101 INRLENEKITCVVADGSM---------GWVMEVAEKMKLRRA 133 (462)
Q Consensus 101 l~~~~~~~~Dlvi~D~~~---------~~~~~~A~~lgiP~v 133 (462)
++. .+.|+||..+.. .....+|...+||++
T Consensus 51 i~~---g~id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 51 IKN---GEIDLVINTLYPLGAQPHEDGKALRRAAENIDIPGA 89 (90)
T ss_pred hcC---CCeEEEEECCCcCcceeccCcHHHHHHHHHcCCCee
Confidence 444 999999986431 134456888899986
No 157
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=89.91 E-value=0.68 Score=34.66 Aligned_cols=83 Identities=12% Similarity=0.147 Sum_probs=50.5
Q ss_pred HHHHHHHHHhCCCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcCCCCCCCCCCC-CHHHHHHHHHHhccHHHHHHHH
Q 044266 21 LLEISQCLVKHGVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIPDGMEPEGDRN-DLGMLTKTMVRVMPEKLEELIE 99 (462)
Q Consensus 21 ~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~ 99 (462)
++++|+.|.+.|++ ++.+....+.+.+. |+++..+.+-....+... .. ++.+
T Consensus 2 ~~~~a~~l~~lG~~--i~AT~gTa~~L~~~---------Gi~~~~v~~~~~~~~~~~g~~----------------~i~~ 54 (95)
T PF02142_consen 2 IVPLAKRLAELGFE--IYATEGTAKFLKEH---------GIEVTEVVNKIGEGESPDGRV----------------QIMD 54 (95)
T ss_dssp HHHHHHHHHHTTSE--EEEEHHHHHHHHHT---------T--EEECCEEHSTG-GGTHCH----------------HHHH
T ss_pred HHHHHHHHHHCCCE--EEEChHHHHHHHHc---------CCCceeeeeecccCccCCchh----------------HHHH
Confidence 57899999999965 56777788888887 888655542211110000 00 3444
Q ss_pred HHhhccCCCceEEEeCCCcchH---------HHHHHHcCCceE
Q 044266 100 NINRLENEKITCVVADGSMGWV---------MEVAEKMKLRRA 133 (462)
Q Consensus 100 ~l~~~~~~~~Dlvi~D~~~~~~---------~~~A~~lgiP~v 133 (462)
.++. .+.|+||..+..... ..+|..++||++
T Consensus 55 ~i~~---~~IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 55 LIKN---GKIDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp HHHT---TSEEEEEEE--THHHHHTHHHHHHHHHHHHTTSHEE
T ss_pred HHHc---CCeEEEEEeCCCCcccccCCcHHHHHHHHHcCCCCc
Confidence 4444 999999988654421 356888899986
No 158
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=89.73 E-value=5.4 Score=31.15 Aligned_cols=106 Identities=15% Similarity=0.191 Sum_probs=62.7
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcCCCCCCCCCCCCHHHHHHH
Q 044266 6 HVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIPDGMEPEGDRNDLGMLTKT 85 (462)
Q Consensus 6 ~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~ 85 (462)
||++.+.++-.|.....-++..|.++|++|.++......+.+.+..... +..++.+.-..
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~~-----~pdvV~iS~~~--------------- 60 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAKEE-----DADAIGLSGLL--------------- 60 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc-----CCCEEEEeccc---------------
Confidence 5889999999999999999999999999999988665544333322111 33333332110
Q ss_pred HHHhccHHHHHHHHHHhhccCC-CceEEEeCCCcchHHHHHHHcCCceEE
Q 044266 86 MVRVMPEKLEELIENINRLENE-KITCVVADGSMGWVMEVAEKMKLRRAA 134 (462)
Q Consensus 86 ~~~~~~~~~~~l~~~l~~~~~~-~~Dlvi~D~~~~~~~~~A~~lgiP~v~ 134 (462)
......+.++++.+++.. . +.-+++.-.........++..|+=.+.
T Consensus 61 --~~~~~~~~~~i~~l~~~~-~~~~~i~vGG~~~~~~~~~~~~~G~D~~~ 107 (119)
T cd02067 61 --TTHMTLMKEVIEELKEAG-LDDIPVLVGGAIVTRDFKFLKEIGVDAYF 107 (119)
T ss_pred --cccHHHHHHHHHHHHHcC-CCCCeEEEECCCCChhHHHHHHcCCeEEE
Confidence 011233455666666521 1 233455544433334577888874443
No 159
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=89.69 E-value=0.95 Score=44.45 Aligned_cols=92 Identities=17% Similarity=0.239 Sum_probs=63.3
Q ss_pred CCceee-cccCc--ccccCCCCcccceeccC--chhhhhhhhcCCceeccccccchhhhHHhHhhhheeeEEeecCCCCc
Q 044266 328 TRRQMV-GWAPQ--QKVLTHPSIACFLSHCG--WNSTMEGVSNGVPFLCWPYFADQFLNESYICDIWKVGLRFNKNKNGI 402 (462)
Q Consensus 328 ~~v~~~-~~~pq--~~ll~~~~~~~~I~HgG--~~sv~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~g~~~~~~~~~~ 402 (462)
+|+.+. ++.++ ..++..|++-+-|+||+ ..++.||+.+|+|++..=...- +...+.. |..++ .
T Consensus 328 ~nvvly~~~~~~~l~~ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~---~~~~i~~----g~l~~-----~ 395 (438)
T TIGR02919 328 DNVKLYPNITTQKIQELYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAH---NRDFIAS----ENIFE-----H 395 (438)
T ss_pred CCcEEECCcChHHHHHHHHhccEEEEccccccHHHHHHHHHHcCCcEEEEecccC---CcccccC----Cceec-----C
Confidence 666654 77883 37999999988889877 6799999999999998843211 1111111 33442 2
Q ss_pred cCHHHHHHHHHHHhcCHH-HHHHHHHHHHH
Q 044266 403 ITREEIMKKVDQVLEDEN-FKARALDLKET 431 (462)
Q Consensus 403 ~~~~~l~~~i~~ll~~~~-~~~~a~~l~~~ 431 (462)
-+.+++.++|.++|.|++ ++++...-++.
T Consensus 396 ~~~~~m~~~i~~lL~d~~~~~~~~~~q~~~ 425 (438)
T TIGR02919 396 NEVDQLISKLKDLLNDPNQFRELLEQQREH 425 (438)
T ss_pred CCHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 478999999999999995 44444444433
No 160
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=89.65 E-value=1.2 Score=35.89 Aligned_cols=49 Identities=16% Similarity=0.215 Sum_probs=41.7
Q ss_pred CCCCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh
Q 044266 2 LRRPHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNA 50 (462)
Q Consensus 2 ~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 50 (462)
+++.+|++.+.++-+|-.-..-++..|.++|++|+++......+.+.+.
T Consensus 1 ~~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~ 49 (137)
T PRK02261 1 MKKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDA 49 (137)
T ss_pred CCCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
Confidence 3567999999999999999999999999999999999987765544443
No 161
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=88.84 E-value=8.1 Score=38.54 Aligned_cols=111 Identities=12% Similarity=0.079 Sum_probs=75.6
Q ss_pred ceeecccCccc---ccCCCCccccee---ccCchhhh-hhhhcCC----ceeccccccchhhhHHhHhhhheeeEEeecC
Q 044266 330 RQMVGWAPQQK---VLTHPSIACFLS---HCGWNSTM-EGVSNGV----PFLCWPYFADQFLNESYICDIWKVGLRFNKN 398 (462)
Q Consensus 330 v~~~~~~pq~~---ll~~~~~~~~I~---HgG~~sv~-eal~~Gv----P~l~~P~~~DQ~~na~~v~~~~g~g~~~~~~ 398 (462)
+++.+.+|+.+ ++..+|| ++. .-|+|-|. |.++++. |+|+--+. -|. ++ +.-|+.++
T Consensus 364 ~~~~~~v~~~el~alYr~ADV--~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefa-----Gaa--~~-l~~AllVN-- 431 (487)
T TIGR02398 364 QFFTRSLPYEEVSAWFAMADV--MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFA-----GAA--VE-LKGALLTN-- 431 (487)
T ss_pred EEEcCCCCHHHHHHHHHhCCE--EEECccccccCcchhhHHhhhcCCCCCEEEeccc-----cch--hh-cCCCEEEC--
Confidence 34567788654 7777887 443 45888554 9999877 44443222 121 33 45577774
Q ss_pred CCCccCHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHhHhhcCCCcHHHHHHHHHHHHhhhccc
Q 044266 399 KNGIITREEIMKKVDQVLEDE--NFKARALDLKETSLNSVREGGQSDKTFKNFVQWIKAEASVQ 460 (462)
Q Consensus 399 ~~~~~~~~~l~~~i~~ll~~~--~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 460 (462)
..+.++++++|.++|+.+ +-++|.+++.+..+.. +...=.++|++++...++++
T Consensus 432 ---P~d~~~~A~ai~~AL~m~~~Er~~R~~~l~~~v~~~-----d~~~W~~~fl~~l~~~~~~~ 487 (487)
T TIGR02398 432 ---PYDPVRMDETIYVALAMPKAEQQARMREMFDAVNYY-----DVQRWADEFLAAVSPQAQLG 487 (487)
T ss_pred ---CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhC-----CHHHHHHHHHHHhhhcccCC
Confidence 389999999999999976 4566777777776652 55556788998888777653
No 162
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=88.54 E-value=3.2 Score=39.11 Aligned_cols=103 Identities=9% Similarity=0.092 Sum_probs=65.1
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhC--CCEEEEEeCCcchHHHHHhhcCCCCCCCCeE-EEEcCCCCCCCCCCCCHHH
Q 044266 5 PHVLAFPYPAQGHVIPLLEISQCLVKH--GVKVTFLNTDYNHKRVVNALGQNNYIGDQIK-LVSIPDGMEPEGDRNDLGM 81 (462)
Q Consensus 5 ~~Il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~-~~~i~~~~~~~~~~~~~~~ 81 (462)
||||++-..+.|++.-..++.+.|++. +.+|++++.+.+.+.++.. +.+. ++.++.. . ...
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~l~~~~--------p~vd~vi~~~~~---~-----~~~ 64 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQIPSWH--------PAVDRVIPVAIR---R-----WRK 64 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHHHHhcC--------CCccEEEeechh---H-----hhh
Confidence 489999999999999999999999985 8999999998887766544 3444 2333210 0 000
Q ss_pred HHHHHHHhccHHHHHHHHHHhhccCCCceEEEeCCCcchHHHHHHHc
Q 044266 82 LTKTMVRVMPEKLEELIENINRLENEKITCVVADGSMGWVMEVAEKM 128 (462)
Q Consensus 82 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~~~~~~A~~l 128 (462)
..+.......+.+++..++. .++|++|.-........++..+
T Consensus 65 --~~~~~~~~~~~~~~~~~lr~---~~yD~vidl~~~~~s~~l~~~~ 106 (322)
T PRK10964 65 --AWFSAPIRAERKAFREALQA---EQYDAVIDAQGLVKSAALVTRL 106 (322)
T ss_pred --cccchhHHHHHHHHHHHHhc---cCCCEEEEccchHHHHHHHHHh
Confidence 00001111234566777777 8999988543333333444333
No 163
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=88.24 E-value=4.4 Score=35.16 Aligned_cols=104 Identities=17% Similarity=0.180 Sum_probs=65.8
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcCCCCCCCCCCCCHHHHH
Q 044266 4 RPHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIPDGMEPEGDRNDLGMLT 83 (462)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~ 83 (462)
+.||++.+.++-.|-....-++..|.++|++|+++...-..+.+.+.... .+..++.+.-..
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~-----~~~d~v~lS~~~------------- 143 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKE-----HKPDILGLSALM------------- 143 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-----cCCCEEEEeccc-------------
Confidence 56999999999999999999999999999999999876554444333211 134444433211
Q ss_pred HHHHHhccHHHHHHHHHHhhccCCCc--eE--EEeCCCcchHHHHHHHcCCceEE
Q 044266 84 KTMVRVMPEKLEELIENINRLENEKI--TC--VVADGSMGWVMEVAEKMKLRRAA 134 (462)
Q Consensus 84 ~~~~~~~~~~~~~l~~~l~~~~~~~~--Dl--vi~D~~~~~~~~~A~~lgiP~v~ 134 (462)
....+.+.++++.+++ ..+ |+ ++.-. ......++.+|.=.+.
T Consensus 144 ----~~~~~~~~~~i~~lr~---~~~~~~~~i~vGG~--~~~~~~~~~~GaD~~~ 189 (201)
T cd02070 144 ----TTTMGGMKEVIEALKE---AGLRDKVKVMVGGA--PVNQEFADEIGADGYA 189 (201)
T ss_pred ----cccHHHHHHHHHHHHH---CCCCcCCeEEEECC--cCCHHHHHHcCCcEEE
Confidence 1122345666666666 333 44 33332 3344678888866554
No 164
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=87.51 E-value=6.3 Score=30.64 Aligned_cols=87 Identities=22% Similarity=0.173 Sum_probs=57.1
Q ss_pred ChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHhccHHHHH
Q 044266 17 HVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIPDGMEPEGDRNDLGMLTKTMVRVMPEKLEE 96 (462)
Q Consensus 17 H~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (462)
+-.-+.++++.|.+.|++|. +++...+.+.+. |+.+..+.+..... .. + .+.+.+
T Consensus 11 dk~~~~~~a~~l~~~G~~i~--aT~gTa~~L~~~---------gi~~~~v~~~~~~~-~~-~------------~~~i~~ 65 (116)
T cd01423 11 SKPELLPTAQKLSKLGYKLY--ATEGTADFLLEN---------GIPVTPVAWPSEEP-QN-D------------KPSLRE 65 (116)
T ss_pred cchhHHHHHHHHHHCCCEEE--EccHHHHHHHHc---------CCCceEeeeccCCC-CC-C------------chhHHH
Confidence 55678899999999998883 566777888776 66655543211000 00 0 144555
Q ss_pred HHHHHhhccCCCceEEEeCCC---------cchHHHHHHHcCCceEE
Q 044266 97 LIENINRLENEKITCVVADGS---------MGWVMEVAEKMKLRRAA 134 (462)
Q Consensus 97 l~~~l~~~~~~~~Dlvi~D~~---------~~~~~~~A~~lgiP~v~ 134 (462)
+++. .++|+||.-+. .+.....|-.+|||+++
T Consensus 66 ~i~~------~~idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~iT 106 (116)
T cd01423 66 LLAE------GKIDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLIT 106 (116)
T ss_pred HHHc------CCceEEEECCCCCCCccccCcEeeehhhHhhCCcccc
Confidence 5555 89999998543 23455678899999974
No 165
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=87.34 E-value=1.8 Score=40.31 Aligned_cols=40 Identities=18% Similarity=0.230 Sum_probs=32.4
Q ss_pred EEEE-EcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchH
Q 044266 6 HVLA-FPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHK 45 (462)
Q Consensus 6 ~Il~-~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 45 (462)
|++| ..-|+.|-..-..++|..++++|++|.++++++.+.
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~ 42 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAHS 42 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCcc
Confidence 5554 445677999999999999999999999999988654
No 166
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=87.10 E-value=1.2 Score=38.16 Aligned_cols=46 Identities=13% Similarity=-0.027 Sum_probs=36.1
Q ss_pred CCCCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHH
Q 044266 2 LRRPHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRV 47 (462)
Q Consensus 2 ~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v 47 (462)
.+..||++--.|+.|=+.....+++.|.++||+|.++.++.-.+.+
T Consensus 3 l~~k~IllgVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~aA~~~~ 48 (196)
T PRK08305 3 LKGKRIGFGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQTTD 48 (196)
T ss_pred CCCCEEEEEEcCHHHHHHHHHHHHHHHHhCcCEEEEEECHhHHHHh
Confidence 4667888777676665555799999999999999999998755443
No 167
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=87.01 E-value=18 Score=30.90 Aligned_cols=100 Identities=16% Similarity=0.102 Sum_probs=64.0
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCc------chHHHHHhhcCCCCCCCCeEEEEcCCCCCCCCCC
Q 044266 3 RRPHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDY------NHKRVVNALGQNNYIGDQIKLVSIPDGMEPEGDR 76 (462)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~------~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~ 76 (462)
++..|.+++..+.|-....+.+|-+.+.+|++|.++-.-. ....++.. +++.+.....++....
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l--------~~v~~~~~g~~~~~~~-- 90 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFG--------GGVEFHVMGTGFTWET-- 90 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcC--------CCcEEEECCCCCcccC--
Confidence 3467899999999999999999999999999999886321 11222221 3788888776543322
Q ss_pred CCHHHHHHHHHHhccHHHHHHHHHHhhccCCCceEEEeCCCcc
Q 044266 77 NDLGMLTKTMVRVMPEKLEELIENINRLENEKITCVVADGSMG 119 (462)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~ 119 (462)
.+..+.. ......+....+.+.. .++|+||.|-...
T Consensus 91 ~~~~e~~----~~~~~~~~~a~~~l~~---~~ydlvVLDEi~~ 126 (191)
T PRK05986 91 QDRERDI----AAAREGWEEAKRMLAD---ESYDLVVLDELTY 126 (191)
T ss_pred CCcHHHH----HHHHHHHHHHHHHHhC---CCCCEEEEehhhH
Confidence 1222211 2222334444444444 8999999996444
No 168
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=86.61 E-value=28 Score=32.60 Aligned_cols=355 Identities=12% Similarity=0.053 Sum_probs=164.2
Q ss_pred CccChHHHHHHHHHHHh--CCCEEEEEeCCcc--hHHH-HHhhc--CCCCCCCCeEEEEcCCCCCCCCCCCCHHHHHHHH
Q 044266 14 AQGHVIPLLEISQCLVK--HGVKVTFLNTDYN--HKRV-VNALG--QNNYIGDQIKLVSIPDGMEPEGDRNDLGMLTKTM 86 (462)
Q Consensus 14 ~~GH~~p~l~La~~L~~--rGh~Vt~~~~~~~--~~~v-~~~~~--~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~ 86 (462)
+.|-=.-++.-.+.+.+ ..|...+.+.+.+ .+.+ .+.-. ...-.++++.|+.+.-..-.+.....-..++...
T Consensus 56 GGGGErVLW~Avr~~q~k~~n~~~viYsGD~n~t~~~IL~k~k~~F~idlDs~nI~Fi~Lk~R~lVea~~~~hfTllgQa 135 (465)
T KOG1387|consen 56 GGGGERVLWKAVRITQRKFPNNVIVIYSGDFNVTPENILNKVKNKFDIDLDSDNIFFIYLKLRYLVEASTWKHFTLLGQA 135 (465)
T ss_pred CCCcceehhHHHHHHHHhCCCceEEEEeCCCCCCHHHHHHHHHHhcCceecccceEEEEEEeeeeeecccccceehHHHH
Confidence 44555667777777765 3566666666532 1222 11110 0112345777777653322221111111111111
Q ss_pred HHhccHHHHHHHHHHhhccCCCceEEEeCCCcchHHHH-HHHcCCceEEEccchhHHHHHHHhHhhhhcCCCcCCCCCCc
Q 044266 87 VRVMPEKLEELIENINRLENEKITCVVADGSMGWVMEV-AEKMKLRRAAFWPAAAGLLALSFSVQRFLDDGIVDDNGTPV 165 (462)
Q Consensus 87 ~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~~~~~~-A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 165 (462)
+..+--.+ +++-+ ..||+.|-...++...-+ ++-.++|++.+...|.....+.-.+.+...+
T Consensus 136 igsmIl~~----Eai~r---~~Pdi~IDtMGY~fs~p~~r~l~~~~V~aYvHYP~iS~DML~~l~qrq~s---------- 198 (465)
T KOG1387|consen 136 IGSMILAF----EAIIR---FPPDIFIDTMGYPFSYPIFRRLRRIPVVAYVHYPTISTDMLKKLFQRQKS---------- 198 (465)
T ss_pred HHHHHHHH----HHHHh---CCchheEecCCCcchhHHHHHHccCceEEEEecccccHHHHHHHHhhhhc----------
Confidence 11111112 33333 799999988877755544 4466999999988776554443322111110
Q ss_pred cccccccCCCCcccCcccchhhhhcCCCcchhhHHHHHHhhhhh-ccccEEEEcCccccchhhhccCCC-cccc-CcccC
Q 044266 166 KQQMIQLAPTMAAIHSSKLVWACIGDFNTQKIVFDFTIDNNETI-KKAERLICNSTYDLEPGALDLIPE-FLPI-GPLLS 242 (462)
Q Consensus 166 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~ns~~~le~~~~~~~p~-v~~v-Gp~~~ 242 (462)
++ +. ...-..++.|...+... ..++.+++|+.+.-..-..-|..+ +.-| .||..
T Consensus 199 ---------~~-------l~-------~~KlaY~rlFa~lY~~~G~~ad~vm~NssWT~nHI~qiW~~~~~~iVyPPC~~ 255 (465)
T KOG1387|consen 199 ---------GI-------LV-------WGKLAYWRLFALLYQSAGSKADIVMTNSSWTNNHIKQIWQSNTCSIVYPPCST 255 (465)
T ss_pred ---------ch-------hh-------hHHHHHHHHHHHHHHhccccceEEEecchhhHHHHHHHhhccceeEEcCCCCH
Confidence 00 00 01123456666666665 677899999987543321112211 1111 12222
Q ss_pred CCCCCCCCCCCCCCCchhhHhhccCCCCcEEEEeccCcccc-CHHHHHH--HHHHHH---hCCCCE-EEEEcCCCCCccc
Q 044266 243 SNRLGNSAGYFWPEDSTCLKWLDQQQQNSVIYVAFGSFTVF-DKEQFQE--LASGLE---LTNRPF-LWVVRPDITNDAI 315 (462)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~-~~~~~~~--~~~a~~---~~~~~~-i~~~~~~~~~~~~ 315 (462)
+ ++.+-....+.|-+..+++|-.--. +.+.++- +-...+ ....++ +..+++. ++.+-
T Consensus 256 e---------------~lks~~~te~~r~~~ll~l~Q~RPEKnH~~Lql~Al~~~~~pl~a~~~~iKL~ivGSc-RneeD 319 (465)
T KOG1387|consen 256 E---------------DLKSKFGTEGERENQLLSLAQFRPEKNHKILQLFALYLKNEPLEASVSPIKLIIVGSC-RNEED 319 (465)
T ss_pred H---------------HHHHHhcccCCcceEEEEEeecCcccccHHHHHHHHHHhcCchhhccCCceEEEEecc-CChhh
Confidence 1 2222222223455777888764211 1111222 211111 111222 2222221 11111
Q ss_pred ccCch---hHHH--HhcCCceeecccCccc---ccCCCCcccceeccCch-----hhhhhhhcCCceeccccccchhhhH
Q 044266 316 DAYPE---GFQD--RVATRRQMVGWAPQQK---VLTHPSIACFLSHCGWN-----STMEGVSNGVPFLCWPYFADQFLNE 382 (462)
Q Consensus 316 ~~~~~---~~~~--~~~~~v~~~~~~pq~~---ll~~~~~~~~I~HgG~~-----sv~eal~~GvP~l~~P~~~DQ~~na 382 (462)
...-. +..+ .+++++.+.--+|..+ +|+.+.+ = -|+=|| +|.|.+++|.=+|+--..+--.+.
T Consensus 320 ~ervk~Lkd~a~~L~i~~~v~F~~N~Py~~lv~lL~~a~i--G-vh~MwNEHFGIsVVEyMAAGlIpi~h~SgGP~lDI- 395 (465)
T KOG1387|consen 320 EERVKSLKDLAEELKIPKHVQFEKNVPYEKLVELLGKATI--G-VHTMWNEHFGISVVEYMAAGLIPIVHNSGGPLLDI- 395 (465)
T ss_pred HHHHHHHHHHHHhcCCccceEEEecCCHHHHHHHhcccee--e-hhhhhhhhcchhHHHHHhcCceEEEeCCCCCceee-
Confidence 00000 1111 1357888888899875 5555443 1 144344 788999999755443111111100
Q ss_pred HhHhhhheeeEEeecCCCCccCHHHHHHHHHHHhcCH-----HHHHHHHHHHHHHHhH
Q 044266 383 SYICDIWKVGLRFNKNKNGIITREEIMKKVDQVLEDE-----NFKARALDLKETSLNS 435 (462)
Q Consensus 383 ~~v~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ll~~~-----~~~~~a~~l~~~~~~~ 435 (462)
|... .|..-. --..|.++-+++|.+++... ++|++|+.--++|.+.
T Consensus 396 --V~~~--~G~~tG---Fla~t~~EYaE~iLkIv~~~~~~r~~~r~~AR~s~~RFsE~ 446 (465)
T KOG1387|consen 396 --VTPW--DGETTG---FLAPTDEEYAEAILKIVKLNYDERNMMRRNARKSLARFGEL 446 (465)
T ss_pred --eecc--CCccce---eecCChHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhhHH
Confidence 0000 010000 01247788889988888643 4788888877777653
No 169
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=86.57 E-value=2.4 Score=45.31 Aligned_cols=98 Identities=15% Similarity=0.102 Sum_probs=63.5
Q ss_pred cccCCCCcccceec---cCch-hhhhhhhcCCc---eeccccccchhhhHHhHhhhhe-eeEEeecCCCCccCHHHHHHH
Q 044266 340 KVLTHPSIACFLSH---CGWN-STMEGVSNGVP---FLCWPYFADQFLNESYICDIWK-VGLRFNKNKNGIITREEIMKK 411 (462)
Q Consensus 340 ~ll~~~~~~~~I~H---gG~~-sv~eal~~GvP---~l~~P~~~DQ~~na~~v~~~~g-~g~~~~~~~~~~~~~~~l~~~ 411 (462)
+++..+++ ||.- -|+| +++|++++|+| ++++.-+. ..+.. +| -|+.++ ..+.++++++
T Consensus 371 aly~~ADv--fvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~---G~~~~----l~~~allVn-----P~D~~~lA~A 436 (797)
T PLN03063 371 ALYAITDV--MLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFA---GAGQS----LGAGALLVN-----PWNITEVSSA 436 (797)
T ss_pred HHHHhCCE--EEeCccccccCcchhhHheeecCCCCCEEeeCCc---Cchhh----hcCCeEEEC-----CCCHHHHHHH
Confidence 57888888 7754 4777 67799999999 44444322 22221 33 577774 3799999999
Q ss_pred HHHHhc-CH-HHHHHHHHHHHHHHhHhhcCCCcHHHHHHHHHHHHhh
Q 044266 412 VDQVLE-DE-NFKARALDLKETSLNSVREGGQSDKTFKNFVQWIKAE 456 (462)
Q Consensus 412 i~~ll~-~~-~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 456 (462)
|.++|+ ++ +-+++.+.+.+..... +...-.++|++.+.+.
T Consensus 437 I~~aL~m~~~er~~r~~~~~~~v~~~-----~~~~Wa~~fl~~l~~~ 478 (797)
T PLN03063 437 IKEALNMSDEERETRHRHNFQYVKTH-----SAQKWADDFMSELNDI 478 (797)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhhhC-----CHHHHHHHHHHHHHHH
Confidence 999998 54 3455555566555542 4445566666666544
No 170
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=86.01 E-value=5.5 Score=34.43 Aligned_cols=107 Identities=13% Similarity=0.076 Sum_probs=67.0
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcCCCCCCCCCCCCHHHHH
Q 044266 4 RPHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIPDGMEPEGDRNDLGMLT 83 (462)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~ 83 (462)
+.+|++.+.++--|-....-++.-|..+|++|++++..-..+.+.+..... +..++.+.-...
T Consensus 84 ~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~~-----~pd~v~lS~~~~------------ 146 (197)
T TIGR02370 84 LGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKKE-----KPLMLTGSALMT------------ 146 (197)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHc-----CCCEEEEccccc------------
Confidence 468999999999999999999999999999999999887655544432211 444444332111
Q ss_pred HHHHHhccHHHHHHHHHHhhcc-CCCceEEEeCCCcchHHHHHHHcCCceEE
Q 044266 84 KTMVRVMPEKLEELIENINRLE-NEKITCVVADGSMGWVMEVAEKMKLRRAA 134 (462)
Q Consensus 84 ~~~~~~~~~~~~~l~~~l~~~~-~~~~Dlvi~D~~~~~~~~~A~~lgiP~v~ 134 (462)
...+.++++++.+++.. ..++-+++--.. . ....|+++|.-.+.
T Consensus 147 -----~~~~~~~~~i~~l~~~~~~~~v~i~vGG~~-~-~~~~~~~~gad~~~ 191 (197)
T TIGR02370 147 -----TTMYGQKDINDKLKEEGYRDSVKFMVGGAP-V-TQDWADKIGADVYG 191 (197)
T ss_pred -----cCHHHHHHHHHHHHHcCCCCCCEEEEEChh-c-CHHHHHHhCCcEEe
Confidence 11233556666666631 022344444432 2 45678887765443
No 171
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=85.89 E-value=4.6 Score=36.52 Aligned_cols=91 Identities=16% Similarity=0.175 Sum_probs=54.6
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchH-HHHHhhcCCCCCCCCeEEEEcCCCCCCCCCCCCHHHHHH
Q 044266 6 HVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHK-RVVNALGQNNYIGDQIKLVSIPDGMEPEGDRNDLGMLTK 84 (462)
Q Consensus 6 ~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~-~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~ 84 (462)
||+++.. .|. -..|++.|.++||+|+..+...... .+... .+..+.. . ..+
T Consensus 2 ~ILvlGG--T~e---gr~la~~L~~~g~~v~~s~~t~~~~~~~~~~--------g~~~v~~--g-------~l~------ 53 (256)
T TIGR00715 2 TVLLMGG--TVD---SRAIAKGLIAQGIEILVTVTTSEGKHLYPIH--------QALTVHT--G-------ALD------ 53 (256)
T ss_pred eEEEEec--hHH---HHHHHHHHHhCCCeEEEEEccCCcccccccc--------CCceEEE--C-------CCC------
Confidence 6777543 332 5689999999999999888776543 23222 0122221 0 000
Q ss_pred HHHHhccHHHHHHHHHHhhccCCCceEEEeCCCcch------HHHHHHHcCCceEEEc
Q 044266 85 TMVRVMPEKLEELIENINRLENEKITCVVADGSMGW------VMEVAEKMKLRRAAFW 136 (462)
Q Consensus 85 ~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~~------~~~~A~~lgiP~v~~~ 136 (462)
...+.++++. .++|+||--.+-+. +..+|+++|||++.|-
T Consensus 54 ------~~~l~~~l~~------~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~e 99 (256)
T TIGR00715 54 ------PQELREFLKR------HSIDILVDATHPFAAQITTNATAVCKELGIPYVRFE 99 (256)
T ss_pred ------HHHHHHHHHh------cCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 1224455555 88997774433332 4577999999999963
No 172
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=85.84 E-value=20 Score=30.22 Aligned_cols=98 Identities=12% Similarity=0.108 Sum_probs=61.3
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEE---eCC---cchHHHHHhhcCCCCCCCCeEEEEcCCCCCCCCCCC
Q 044266 4 RPHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFL---NTD---YNHKRVVNALGQNNYIGDQIKLVSIPDGMEPEGDRN 77 (462)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~---~~~---~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~ 77 (462)
+.-|.+++..+.|-....+.+|-+.+.+|+.|.++ =.. .....++.. ++.+.....++.... .
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~---------~~~~~~~g~g~~~~~--~ 73 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEPH---------GVEFQVMGTGFTWET--Q 73 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHhc---------CcEEEECCCCCeecC--C
Confidence 45678889999999999999999999999999765 222 112233332 788888776654332 1
Q ss_pred CHHHHHHHHHHhccHHHHHHHHHHhhccCCCceEEEeCCCcc
Q 044266 78 DLGMLTKTMVRVMPEKLEELIENINRLENEKITCVVADGSMG 119 (462)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~ 119 (462)
+..+.... ....++...+.+.. .++|+||.|-...
T Consensus 74 ~~~~~~~~----~~~~~~~a~~~l~~---~~~DlvVLDEi~~ 108 (173)
T TIGR00708 74 NREADTAI----AKAAWQHAKEMLAD---PELDLVLLDELTY 108 (173)
T ss_pred CcHHHHHH----HHHHHHHHHHHHhc---CCCCEEEehhhHH
Confidence 22111111 22333333344443 8999999996443
No 173
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=85.71 E-value=9.7 Score=29.24 Aligned_cols=84 Identities=20% Similarity=0.139 Sum_probs=58.3
Q ss_pred cChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHhccHHHH
Q 044266 16 GHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIPDGMEPEGDRNDLGMLTKTMVRVMPEKLE 95 (462)
Q Consensus 16 GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (462)
++-.-++++++.|.+.|+++. +++...+.+.+. |+.+..+.... ...+.+.
T Consensus 10 ~~k~~~~~~~~~l~~~G~~l~--aT~gT~~~l~~~---------gi~~~~v~~~~------------------~~~~~i~ 60 (110)
T cd01424 10 RDKPEAVEIAKRLAELGFKLV--ATEGTAKYLQEA---------GIPVEVVNKVS------------------EGRPNIV 60 (110)
T ss_pred CcHhHHHHHHHHHHHCCCEEE--EchHHHHHHHHc---------CCeEEEEeecC------------------CCchhHH
Confidence 466778999999999999984 555677788876 77765543211 0223344
Q ss_pred HHHHHHhhccCCCceEEEeCCC-------cchHHHHHHHcCCceEE
Q 044266 96 ELIENINRLENEKITCVVADGS-------MGWVMEVAEKMKLRRAA 134 (462)
Q Consensus 96 ~l~~~l~~~~~~~~Dlvi~D~~-------~~~~~~~A~~lgiP~v~ 134 (462)
++++. .++|+||..+. .+.....|-.+|||+++
T Consensus 61 ~~i~~------~~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 61 DLIKN------GEIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred HHHHc------CCeEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 55555 89999998542 23556778899999995
No 174
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=85.62 E-value=1.6 Score=34.05 Aligned_cols=39 Identities=8% Similarity=-0.002 Sum_probs=27.7
Q ss_pred CEEEEEcCCCcc---ChHHHHHHHHHHHhCCCEEEEEeCCcc
Q 044266 5 PHVLAFPYPAQG---HVIPLLEISQCLVKHGVKVTFLNTDYN 43 (462)
Q Consensus 5 ~~Il~~~~~~~G---H~~p~l~La~~L~~rGh~Vt~~~~~~~ 43 (462)
+||+|+.-|-.+ .-...++|+.+.++|||+|.++.....
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~dL 42 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPGDL 42 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGGE
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCcE
Confidence 488888776544 445788999999999999999998764
No 175
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=85.52 E-value=1.5 Score=34.95 Aligned_cols=45 Identities=11% Similarity=0.023 Sum_probs=37.1
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh
Q 044266 5 PHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNA 50 (462)
Q Consensus 5 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 50 (462)
+||++...|+.+=+. ...+.+.|.++|++|.++.++.-.+.+...
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A~~~~~~~ 45 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSAERFVTPE 45 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHHHHHSHHH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcHHHHhhhh
Confidence 388888878776666 999999999999999999998877777666
No 176
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=85.12 E-value=2.6 Score=36.32 Aligned_cols=114 Identities=16% Similarity=0.115 Sum_probs=57.3
Q ss_pred hHHHHHHHHHHHhCCCEEEEEeCCcchHH-HHHhhcCCCCCCCCeEEEEcCCCCCCCCCCCCHHHH---HHHHHHhccHH
Q 044266 18 VIPLLEISQCLVKHGVKVTFLNTDYNHKR-VVNALGQNNYIGDQIKLVSIPDGMEPEGDRNDLGML---TKTMVRVMPEK 93 (462)
Q Consensus 18 ~~p~l~La~~L~~rGh~Vt~~~~~~~~~~-v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 93 (462)
+.-.+.+.+.+.++|-.|.|+++...... +.+.... .+..+. ...+..+ ..++.... +..+...-...
T Consensus 42 L~~A~~~i~~i~~~~g~iLfV~t~~~~~~~v~~~a~~-----~~~~~i--~~rw~~G-~LTN~~~~~~~~~~~~~~~~~~ 113 (193)
T cd01425 42 LRLALNFIANIAAKGGKILFVGTKPQAQRAVKKFAER-----TGSFYV--NGRWLGG-TLTNWKTIRKSIKRLKKLEKEK 113 (193)
T ss_pred HHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHH-----cCCeee--cCeecCC-cCCCHHHHHHHHHHHHHHHHHH
Confidence 33445555677778999999999865433 3332110 022221 1112222 12222211 11111100122
Q ss_pred HHHHHHHHhhccCCCceEEEeCC-Ccc-hHHHHHHHcCCceEEEccchh
Q 044266 94 LEELIENINRLENEKITCVVADG-SMG-WVMEVAEKMKLRRAAFWPAAA 140 (462)
Q Consensus 94 ~~~l~~~l~~~~~~~~Dlvi~D~-~~~-~~~~~A~~lgiP~v~~~~~~~ 140 (462)
++..+..++... ..||+||+-. ..- .+..-|.++|||.+.+.-+..
T Consensus 114 ~~k~~~g~~~~~-~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn~ 161 (193)
T cd01425 114 LEKNLGGIKDMF-RLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTNC 161 (193)
T ss_pred HHHhcccccccc-cCCCEEEEeCCccchHHHHHHHHcCCCEEEEecCCC
Confidence 233333332222 7899987544 333 677889999999999876553
No 177
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=85.04 E-value=12 Score=34.97 Aligned_cols=41 Identities=22% Similarity=0.258 Sum_probs=33.0
Q ss_pred CEEEEEcC-CCccChHHHHHHHHHHHhCCCEEEEEeCCcchH
Q 044266 5 PHVLAFPY-PAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHK 45 (462)
Q Consensus 5 ~~Il~~~~-~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 45 (462)
+||+|++. |+.|-..-..++|-.|++.|..|.++++++-+.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhs 43 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHS 43 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCc
Confidence 57876664 456998899999999999999999998876543
No 178
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=84.69 E-value=21 Score=29.53 Aligned_cols=98 Identities=14% Similarity=0.104 Sum_probs=60.6
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCEEEE---EeCCc--c-hHHHHHhhcCCCCCCCCeEEEEcCCCCCCCCCCCC
Q 044266 5 PHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTF---LNTDY--N-HKRVVNALGQNNYIGDQIKLVSIPDGMEPEGDRND 78 (462)
Q Consensus 5 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~---~~~~~--~-~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~ 78 (462)
.-|.+.+.++.|-....+.+|-+.+.+|+.|.| +-... - ...++.. +++.+.....+..... .+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l--------~~v~~~~~g~~~~~~~--~~ 72 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERL--------PNIEIHRMGRGFFWTT--EN 72 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhC--------CCcEEEECCCCCccCC--CC
Confidence 457788889999999999999999999999999 44421 1 2223322 3788887665543322 12
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHhhccCCCceEEEeCCCcc
Q 044266 79 LGMLTKTMVRVMPEKLEELIENINRLENEKITCVVADGSMG 119 (462)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~ 119 (462)
..+... .....++...+.+.. .++|+||.|-...
T Consensus 73 ~~~~~~----~a~~~~~~a~~~~~~---~~~dLlVLDEi~~ 106 (159)
T cd00561 73 DEEDIA----AAAEGWAFAKEAIAS---GEYDLVILDEINY 106 (159)
T ss_pred hHHHHH----HHHHHHHHHHHHHhc---CCCCEEEEechHh
Confidence 222121 122333333334433 8999999996544
No 179
>PRK06849 hypothetical protein; Provisional
Probab=84.26 E-value=7.7 Score=37.67 Aligned_cols=39 Identities=18% Similarity=0.132 Sum_probs=30.7
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcc
Q 044266 1 MLRRPHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYN 43 (462)
Q Consensus 1 ~~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 43 (462)
|..+++||+.... ....+.+++.|.++||+|+++.....
T Consensus 1 ~~~~~~VLI~G~~----~~~~l~iar~l~~~G~~Vi~~d~~~~ 39 (389)
T PRK06849 1 MNTKKTVLITGAR----APAALELARLFHNAGHTVILADSLKY 39 (389)
T ss_pred CCCCCEEEEeCCC----cHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 6677888886432 23689999999999999999988754
No 180
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=84.03 E-value=4.4 Score=36.41 Aligned_cols=93 Identities=12% Similarity=0.115 Sum_probs=56.6
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcCCCCCCCCCCCCHHHHH
Q 044266 4 RPHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIPDGMEPEGDRNDLGMLT 83 (462)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~ 83 (462)
+++|+++...+-| -.||+.|.++|+.|++-+...... . .. .++.... ..+ .
T Consensus 2 ~~~IlvlgGT~eg-----r~la~~L~~~g~~v~~Svat~~g~-~-~~--------~~~~v~~--G~l------~------ 52 (248)
T PRK08057 2 MPRILLLGGTSEA-----RALARALAAAGVDIVLSLAGRTGG-P-AD--------LPGPVRV--GGF------G------ 52 (248)
T ss_pred CceEEEEechHHH-----HHHHHHHHhCCCeEEEEEccCCCC-c-cc--------CCceEEE--CCC------C------
Confidence 4588887765555 468899999999888777665443 1 11 1333221 000 0
Q ss_pred HHHHHhccHHHHHHHHHHhhccCCCceEEE--eCCCcc----hHHHHHHHcCCceEEEcc
Q 044266 84 KTMVRVMPEKLEELIENINRLENEKITCVV--ADGSMG----WVMEVAEKMKLRRAAFWP 137 (462)
Q Consensus 84 ~~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi--~D~~~~----~~~~~A~~lgiP~v~~~~ 137 (462)
....+.++++. .++|+|| +.+|.. -+..+|+++|||++.|-.
T Consensus 53 ------~~~~l~~~l~~------~~i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~eR 100 (248)
T PRK08057 53 ------GAEGLAAYLRE------EGIDLVIDATHPYAAQISANAAAACRALGIPYLRLER 100 (248)
T ss_pred ------CHHHHHHHHHH------CCCCEEEECCCccHHHHHHHHHHHHHHhCCcEEEEeC
Confidence 12334455555 8999987 333333 245779999999999743
No 181
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=83.50 E-value=18 Score=32.65 Aligned_cols=112 Identities=10% Similarity=0.075 Sum_probs=57.4
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcC-CCCC-CCC-CCCCHHHH
Q 044266 6 HVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIP-DGME-PEG-DRNDLGML 82 (462)
Q Consensus 6 ~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~-~~~~-~~~-~~~~~~~~ 82 (462)
|||+.---+. |---+..|+++|.+ +|+|+++.+...+....... .....++...+. ++.. ... ....+...
T Consensus 2 ~ILvtNDDGi-~apGl~aL~~~l~~-~~~V~VvAP~~~~Sg~g~si----t~~~pl~~~~~~~~~~~~~~~~v~GTPaDc 75 (253)
T PRK13933 2 NILLTNDDGI-NAEGINTLAELLSK-YHEVIIVAPENQRSASSHSI----TIYEPIIIKEVKLEGINSKAYSISGTPADC 75 (253)
T ss_pred eEEEEcCCCC-CChhHHHHHHHHHh-CCcEEEEccCCCCccccccc----cCCCCeEEEeeccCCCCccEEEECCcHHHH
Confidence 6666442222 22237788888864 68999999987765432221 111234444443 1100 000 01122222
Q ss_pred HHHHHHhccHHHHHHHHHHhhccCCCceEEEeCC----------Ccc---hHHHHHHHcCCceEEEcc
Q 044266 83 TKTMVRVMPEKLEELIENINRLENEKITCVVADG----------SMG---WVMEVAEKMKLRRAAFWP 137 (462)
Q Consensus 83 ~~~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~----------~~~---~~~~~A~~lgiP~v~~~~ 137 (462)
...- +..+-. .+||+||+-. ++. .+..-|..+|||.+.++.
T Consensus 76 V~la-----------l~~l~~---~~pDLVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~GiPsiA~S~ 129 (253)
T PRK13933 76 VRVA-----------LDKLVP---DNIDMVISGINKGLNIGNDILYSGTVSAAIEGAIYKVPSIAVSA 129 (253)
T ss_pred HHHH-----------HHHhcC---CCCCEEEECCcCCCCCCcCCccchhHHHHHHHHHcCCCeEEEEe
Confidence 1111 112222 6899999743 222 345557778999999875
No 182
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=83.49 E-value=1.5 Score=36.88 Aligned_cols=43 Identities=5% Similarity=0.105 Sum_probs=26.3
Q ss_pred ccHHHHHHHHHHhhccCCCceEEEeCCCcchHH--H-H-HHH-c-CCceEEEccc
Q 044266 90 MPEKLEELIENINRLENEKITCVVADGSMGWVM--E-V-AEK-M-KLRRAAFWPA 138 (462)
Q Consensus 90 ~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~~~~--~-~-A~~-l-giP~v~~~~~ 138 (462)
..+.+.+++++ .+||+||+...++..+ . + .+. + ++|++.+.|-
T Consensus 77 ~~~~l~~~l~~------~~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvTD 125 (169)
T PF06925_consen 77 FARRLIRLLRE------FQPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVTD 125 (169)
T ss_pred HHHHHHHHHhh------cCCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEcC
Confidence 33445555555 9999999997665333 1 1 222 3 5888776653
No 183
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=83.32 E-value=4.1 Score=37.22 Aligned_cols=77 Identities=10% Similarity=0.104 Sum_probs=46.7
Q ss_pred HHHHHHHhC-CCCEEEEEcCCCCCcccccCchhHHHHh---cCCceeecccCcccccCCCCcccceeccCchhhhhhhhc
Q 044266 290 ELASGLELT-NRPFLWVVRPDITNDAIDAYPEGFQDRV---ATRRQMVGWAPQQKVLTHPSIACFLSHCGWNSTMEGVSN 365 (462)
Q Consensus 290 ~~~~a~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~pq~~ll~~~~~~~~I~HgG~~sv~eal~~ 365 (462)
.+.+..+.. +.+++++.-+. ........+.+.. ...+.+.+-.+-.+++.+++. |||-.+. +-+||+.+
T Consensus 145 ~l~~~~~~~p~~~lvvK~HP~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~s~~--VvtinSt-vGlEAll~ 217 (269)
T PF05159_consen 145 MLESFAKENPDAKLVVKPHPD----ERGGNKYSYLEELPNLPNVVIIDDDVNLYELLEQSDA--VVTINST-VGLEALLH 217 (269)
T ss_pred HHHHHHHHCCCCEEEEEECch----hhCCCChhHhhhhhcCCCeEEECCCCCHHHHHHhCCE--EEEECCH-HHHHHHHc
Confidence 344444433 56777776553 1111111222222 223334466677789988877 8887654 78999999
Q ss_pred CCceeccc
Q 044266 366 GVPFLCWP 373 (462)
Q Consensus 366 GvP~l~~P 373 (462)
|+|++++.
T Consensus 218 gkpVi~~G 225 (269)
T PF05159_consen 218 GKPVIVFG 225 (269)
T ss_pred CCceEEec
Confidence 99999985
No 184
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=83.16 E-value=19 Score=32.65 Aligned_cols=111 Identities=9% Similarity=0.026 Sum_probs=58.0
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcCC-CCCCCCCCCCHHHHHH
Q 044266 6 HVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIPD-GMEPEGDRNDLGMLTK 84 (462)
Q Consensus 6 ~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~-~~~~~~~~~~~~~~~~ 84 (462)
|||+.---+. |---+..|++.|.+.| +|+++.+...+....... .....++...+.. +.+.-.....+.....
T Consensus 2 ~ILlTNDDGi-~apGi~aL~~al~~~g-~V~VvAP~~eqSg~g~ai----T~~~pl~~~~~~~~~~~~y~v~GTPaDCV~ 75 (266)
T PRK13934 2 KILVTNDDGV-HSPGLRLLYEFVSPLG-EVDVVAPETPKSATGLGI----TLHKPLRMYEVDLCGFKVYATSGTPSDTIY 75 (266)
T ss_pred eEEEEcCCCC-CCHHHHHHHHHHHhCC-cEEEEccCCCCccccccc----cCCCCcEEEEeccCCcceEEeCCCHHHHHH
Confidence 5665432222 3345788899998887 799999887665443221 1112345544431 1100001122222222
Q ss_pred HHHHhccHHHHHHHHHHhhccCCCceEEEeCC-----------Ccc---hHHHHHHHcCCceEEEcc
Q 044266 85 TMVRVMPEKLEELIENINRLENEKITCVVADG-----------SMG---WVMEVAEKMKLRRAAFWP 137 (462)
Q Consensus 85 ~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~-----------~~~---~~~~~A~~lgiP~v~~~~ 137 (462)
..+ ..+ . .+||+||+-. ++. .+..-|..+|||.+.++.
T Consensus 76 lal-----------~~l-~---~~pDLViSGIN~G~NlG~d~v~ySGTVgAA~Ea~~~GIPsIAvS~ 127 (266)
T PRK13934 76 LAT-----------YGL-G---RKYDLVLSGINLGDNTSLQVILSSGTLGAAFQAALLGIPAVAYSA 127 (266)
T ss_pred HHH-----------Hhc-c---CCCCeEEecCccCCCCCcCcccccHhHHHHHHHHhcCCCEEEEec
Confidence 111 122 2 7899999732 222 344456778999999875
No 185
>PRK12342 hypothetical protein; Provisional
Probab=82.91 E-value=10 Score=34.12 Aligned_cols=95 Identities=15% Similarity=0.084 Sum_probs=53.8
Q ss_pred HHHHHHHHHhCCCEEEEEeCCcch--HH-H-HHhhcCCCCCCCCeE-EEEcCCCCCCCCCCCCHHHHHHHHHHhccHHHH
Q 044266 21 LLEISQCLVKHGVKVTFLNTDYNH--KR-V-VNALGQNNYIGDQIK-LVSIPDGMEPEGDRNDLGMLTKTMVRVMPEKLE 95 (462)
Q Consensus 21 ~l~La~~L~~rGh~Vt~~~~~~~~--~~-v-~~~~~~~~~~~~~i~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (462)
.++.|-.|++.|.+||+++-.+.. .. + ++...- |.. -+-+.+.-..+ .+.. .....+.
T Consensus 40 AlE~AlrLk~~g~~Vtvls~Gp~~a~~~~l~r~alam------GaD~avli~d~~~~g---~D~~--------ata~~La 102 (254)
T PRK12342 40 AIEAASQLATDGDEIAALTVGGSLLQNSKVRKDVLSR------GPHSLYLVQDAQLEH---ALPL--------DTAKALA 102 (254)
T ss_pred HHHHHHHHhhcCCEEEEEEeCCChHhHHHHHHHHHHc------CCCEEEEEecCccCC---CCHH--------HHHHHHH
Confidence 466777788779999999977643 22 2 333210 211 12222221111 1111 1122344
Q ss_pred HHHHHHhhccCCCceEEEeCCCcc------hHHHHHHHcCCceEEEccc
Q 044266 96 ELIENINRLENEKITCVVADGSMG------WVMEVAEKMKLRRAAFWPA 138 (462)
Q Consensus 96 ~l~~~l~~~~~~~~Dlvi~D~~~~------~~~~~A~~lgiP~v~~~~~ 138 (462)
..++. ..||+||+-.... -+..+|+.+|+|++.+...
T Consensus 103 ~~i~~------~~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 103 AAIEK------IGFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred HHHHH------hCCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 44554 6799999865443 4889999999999987643
No 186
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=82.75 E-value=9 Score=34.32 Aligned_cols=111 Identities=12% Similarity=0.018 Sum_probs=59.5
Q ss_pred EEEEEcCCCccChH-HHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcCC--CCCCCCCCCCHHHH
Q 044266 6 HVLAFPYPAQGHVI-PLLEISQCLVKHGVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIPD--GMEPEGDRNDLGML 82 (462)
Q Consensus 6 ~Il~~~~~~~GH~~-p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~--~~~~~~~~~~~~~~ 82 (462)
|||+.- .-|--. -+..|+++|.+.| +|+++.+...+....... .....+++..++. +...-.....+...
T Consensus 2 ~ILltN--DDGi~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~ai----t~~~pl~~~~~~~~~~~~~~~v~GTPaDc 74 (244)
T TIGR00087 2 KILLTN--DDGIHSPGIRALYQALKELG-EVTVVAPARQRSGTGHSL----TLFEPLRVGQVKVKNGAHIYAVDGTPTDC 74 (244)
T ss_pred eEEEEC--CCCCCCHhHHHHHHHHHhCC-CEEEEeCCCCccccccCc----CCCCCeEEEEeccCCCccEEEEcCcHHHH
Confidence 666532 333333 4778899998888 899999988766553321 1112456555541 11000011122222
Q ss_pred HHHHHHhccHHHHHHHHHHhhccCCCceEEEeCCC----------cc---hHHHHHHHcCCceEEEcc
Q 044266 83 TKTMVRVMPEKLEELIENINRLENEKITCVVADGS----------MG---WVMEVAEKMKLRRAAFWP 137 (462)
Q Consensus 83 ~~~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~----------~~---~~~~~A~~lgiP~v~~~~ 137 (462)
...-+ ..+-. .+||+||+-.- +. .+..-|..+|||.+.++.
T Consensus 75 v~~gl-----------~~l~~---~~pDLVvSGiN~G~N~g~~v~ySGTVgAA~ea~~~GipaiA~S~ 128 (244)
T TIGR00087 75 VILGI-----------NELMP---EVPDLVISGINAGENLGTDVTYSGTVGAAMEAAIHGVPAIAISL 128 (244)
T ss_pred HHHHH-----------HHhcc---CCCCeEEeccccCCCCCccEecchhHHHHHHHHHcCCCeEEEEe
Confidence 22111 12212 67999987532 11 344557778999999875
No 187
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=82.36 E-value=14 Score=33.29 Aligned_cols=41 Identities=10% Similarity=0.064 Sum_probs=26.7
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHH
Q 044266 6 HVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVV 48 (462)
Q Consensus 6 ~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~ 48 (462)
|||+.-=-+. |---+.+|++.|. .+|+|+++.+...+....
T Consensus 2 ~ILlTNDDGi-~a~Gi~aL~~~l~-~~~~V~VvAP~~~qSg~g 42 (253)
T PRK13935 2 NILVTNDDGI-TSPGIIILAEYLS-EKHEVFVVAPDKERSATG 42 (253)
T ss_pred eEEEECCCCC-CCHHHHHHHHHHH-hCCcEEEEccCCCCcccc
Confidence 6666442222 2333677888886 468999999987765443
No 188
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=82.24 E-value=18 Score=32.71 Aligned_cols=99 Identities=12% Similarity=0.058 Sum_probs=55.7
Q ss_pred ChHH----HHHHHHHHHhC--CCEEEEEeCCcch----HHHHHhhcCCCCCCCCeE-EEEcCCCCCCCCCCCCHHHHHHH
Q 044266 17 HVIP----LLEISQCLVKH--GVKVTFLNTDYNH----KRVVNALGQNNYIGDQIK-LVSIPDGMEPEGDRNDLGMLTKT 85 (462)
Q Consensus 17 H~~p----~l~La~~L~~r--Gh~Vt~~~~~~~~----~~v~~~~~~~~~~~~~i~-~~~i~~~~~~~~~~~~~~~~~~~ 85 (462)
-+|| .++.|-.|+++ |.+||+++-.+.. +.+++...- |.. -+.+.+.-..+ .+..
T Consensus 33 ~iN~~D~~AlE~Alrlke~~~g~~Vtvvs~Gp~~a~~~~~lr~aLAm------GaD~avli~d~~~~g---~D~~----- 98 (256)
T PRK03359 33 KISQYDLNAIEAACQLKQQAAEAQVTALSVGGKALTNAKGRKDVLSR------GPDELIVVIDDQFEQ---ALPQ----- 98 (256)
T ss_pred ccChhhHHHHHHHHHHhhhcCCCEEEEEEECCcchhhHHHHHHHHHc------CCCEEEEEecCcccC---cCHH-----
Confidence 4555 46677778876 3799999977643 334543210 221 12222221111 1111
Q ss_pred HHHhccHHHHHHHHHHhhccCCCceEEEeCCCc-----c-hHHHHHHHcCCceEEEccc
Q 044266 86 MVRVMPEKLEELIENINRLENEKITCVVADGSM-----G-WVMEVAEKMKLRRAAFWPA 138 (462)
Q Consensus 86 ~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~-----~-~~~~~A~~lgiP~v~~~~~ 138 (462)
.....+...++. ..||+||+-... . -+..+|+.+|+|++.+...
T Consensus 99 ---~tA~~La~ai~~------~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 99 ---QTASALAAAAQK------AGFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred ---HHHHHHHHHHHH------hCCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 112234445554 679999975433 2 5788999999999987653
No 189
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=81.90 E-value=4.4 Score=39.82 Aligned_cols=39 Identities=18% Similarity=0.045 Sum_probs=29.6
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcch
Q 044266 1 MLRRPHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNH 44 (462)
Q Consensus 1 ~~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 44 (462)
|.+++|||++..+++-| +|++.|.+-++...+++.+.+.
T Consensus 1 ~~~~~kvLviG~g~reh-----al~~~~~~~~~~~~~~~~pgn~ 39 (426)
T PRK13789 1 MQVKLKVLLIGSGGRES-----AIAFALRKSNLLSELKVFPGNG 39 (426)
T ss_pred CCCCcEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEECCch
Confidence 67789999999888877 6899999888655555554443
No 190
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=81.31 E-value=20 Score=31.07 Aligned_cols=102 Identities=14% Similarity=0.097 Sum_probs=53.2
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhC--CCEEEEEeCCcc----hHHHHHhhcCCCCCCCCeEEEEcCCCCCCCCCCCC
Q 044266 5 PHVLAFPYPAQGHVIPLLEISQCLVKH--GVKVTFLNTDYN----HKRVVNALGQNNYIGDQIKLVSIPDGMEPEGDRND 78 (462)
Q Consensus 5 ~~Il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~----~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~ 78 (462)
+||+++..+..+-+. ++.+.+.+. +++|.++.+... .+...+. |+.+..++..-...
T Consensus 2 ~ki~vl~sg~gs~~~---~ll~~~~~~~~~~~I~~vvs~~~~~~~~~~a~~~---------gIp~~~~~~~~~~~----- 64 (200)
T PRK05647 2 KRIVVLASGNGSNLQ---AIIDACAAGQLPAEIVAVISDRPDAYGLERAEAA---------GIPTFVLDHKDFPS----- 64 (200)
T ss_pred ceEEEEEcCCChhHH---HHHHHHHcCCCCcEEEEEEecCccchHHHHHHHc---------CCCEEEECccccCc-----
Confidence 589998877765555 445556654 378887655432 2233333 78777654321100
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHhhccCCCceEEEeCCCcc-hHHHHHHHcCCceEEEcc
Q 044266 79 LGMLTKTMVRVMPEKLEELIENINRLENEKITCVVADGSMG-WVMEVAEKMKLRRAAFWP 137 (462)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~-~~~~~A~~lgiP~v~~~~ 137 (462)
.......+.+.++. .+||++|+-.+.. ....+-+...-.++-+++
T Consensus 65 --------~~~~~~~~~~~l~~------~~~D~iv~~~~~~ii~~~~l~~~~~~~iNiHp 110 (200)
T PRK05647 65 --------REAFDAALVEALDA------YQPDLVVLAGFMRILGPTFVSAYEGRIINIHP 110 (200)
T ss_pred --------hhHhHHHHHHHHHH------hCcCEEEhHHhhhhCCHHHHhhccCCEEEEeC
Confidence 00111223333444 8999999864432 333444444444455444
No 191
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=81.17 E-value=7.5 Score=34.37 Aligned_cols=34 Identities=12% Similarity=0.057 Sum_probs=25.8
Q ss_pred CCceEEE-eCCCcc-hHHHHHHHcCCceEEEccchh
Q 044266 107 EKITCVV-ADGSMG-WVMEVAEKMKLRRAAFWPAAA 140 (462)
Q Consensus 107 ~~~Dlvi-~D~~~~-~~~~~A~~lgiP~v~~~~~~~ 140 (462)
.-||+++ +|+..- .+..-|.++|||+|.++-+..
T Consensus 155 ~~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn~ 190 (252)
T COG0052 155 GLPDVLFVIDPRKEKIAVKEANKLGIPVVALVDTNC 190 (252)
T ss_pred CCCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCCC
Confidence 3488866 666544 788889999999999876554
No 192
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=81.12 E-value=3.9 Score=43.41 Aligned_cols=109 Identities=15% Similarity=0.078 Sum_probs=65.5
Q ss_pred eecccCcc---cccCCCCcccceec---cCch-hhhhhhhcCCceeccccccchhhhHHhHhhhheeeEEeecCCCCccC
Q 044266 332 MVGWAPQQ---KVLTHPSIACFLSH---CGWN-STMEGVSNGVPFLCWPYFADQFLNESYICDIWKVGLRFNKNKNGIIT 404 (462)
Q Consensus 332 ~~~~~pq~---~ll~~~~~~~~I~H---gG~~-sv~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~g~~~~~~~~~~~~ 404 (462)
+.+++++. ++++.+|+ |+.- -|+| +++|++++|+|-...|...+-..-+. + +.-|+.++. .+
T Consensus 346 ~~~~~~~~~l~~ly~~aDv--~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~---~-l~~~llv~P-----~d 414 (726)
T PRK14501 346 FYRSLPFEELVALYRAADV--ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAA---E-LAEALLVNP-----ND 414 (726)
T ss_pred EeCCCCHHHHHHHHHhccE--EEecccccccCcccceEEEEcCCCCceEEEecccchhH---H-hCcCeEECC-----CC
Confidence 44777865 47778887 6654 3544 78899999775222222222111111 2 233677743 68
Q ss_pred HHHHHHHHHHHhcCH--HHHHHHHHHHHHHHhHhhcCCCcHHHHHHHHHHHHhh
Q 044266 405 REEIMKKVDQVLEDE--NFKARALDLKETSLNSVREGGQSDKTFKNFVQWIKAE 456 (462)
Q Consensus 405 ~~~l~~~i~~ll~~~--~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 456 (462)
.++++++|.++|+++ +.+++.+.+.+...+ -+...-.++|++.+.+.
T Consensus 415 ~~~la~ai~~~l~~~~~e~~~r~~~~~~~v~~-----~~~~~w~~~~l~~l~~~ 463 (726)
T PRK14501 415 IEGIAAAIKRALEMPEEEQRERMQAMQERLRR-----YDVHKWASDFLDELREA 463 (726)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHH
Confidence 999999999999854 455555555555443 25555666666666544
No 193
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=81.01 E-value=11 Score=32.96 Aligned_cols=102 Identities=18% Similarity=0.327 Sum_probs=59.7
Q ss_pred CEEEEEcCC--CccChHHHHHHHHHHHhCCCEEEEEeCCc---chHHHHHhhcCCCCCCCCe--EEEEcCCCC-------
Q 044266 5 PHVLAFPYP--AQGHVIPLLEISQCLVKHGVKVTFLNTDY---NHKRVVNALGQNNYIGDQI--KLVSIPDGM------- 70 (462)
Q Consensus 5 ~~Il~~~~~--~~GH~~p~l~La~~L~~rGh~Vt~~~~~~---~~~~v~~~~~~~~~~~~~i--~~~~i~~~~------- 70 (462)
.+|.+++++ +.|-..-...|+-.|+++|+.|.++-..- +.+.+-.... .+ .+..+-++-
T Consensus 2 ~~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~DiGLRNLDlimGlE~-------RiVYd~vdVi~g~~~l~QAL 74 (272)
T COG2894 2 ARIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIGLRNLDLIMGLEN-------RIVYDLVDVIEGEATLNQAL 74 (272)
T ss_pred ceEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCcCchhhhhhhcccc-------eeeeeehhhhcCccchhhHh
Confidence 578888876 66899999999999999999999998764 4444432210 11 122211110
Q ss_pred CCCCCCCCHHHH----HHHHHHhccHHHHHHHHHHhhccCCCceEEEeCC
Q 044266 71 EPEGDRNDLGML----TKTMVRVMPEKLEELIENINRLENEKITCVVADG 116 (462)
Q Consensus 71 ~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~ 116 (462)
-.+....++.-+ .+.=-....+.+..++++++. ..||.||+|.
T Consensus 75 IkDKr~~nL~lLPAsQtrdKdalt~E~v~~vv~eL~~---~~fDyIi~Ds 121 (272)
T COG2894 75 IKDKRLENLFLLPASQTRDKDALTPEGVKKVVNELKA---MDFDYIIIDS 121 (272)
T ss_pred hccccCCceEecccccccCcccCCHHHHHHHHHHHHh---cCCCEEEecC
Confidence 000000111000 000001235678888999887 8999999995
No 194
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=80.77 E-value=11 Score=31.96 Aligned_cols=107 Identities=14% Similarity=0.068 Sum_probs=53.9
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCE--EEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcCCCCCCCCCCCCHHHH
Q 044266 5 PHVLAFPYPAQGHVIPLLEISQCLVKHGVK--VTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIPDGMEPEGDRNDLGML 82 (462)
Q Consensus 5 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~--Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~ 82 (462)
|||+|+.+++. .-+..+.+.|.+++|+ |.++.+............. .++....+....
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~~~~~~~iv~Vit~~~~~~~~~~~~~-----~~~~~~~~~~~~------------ 60 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKARGHNVEIVLVITNPDKPRGRSRAIK-----NGIPAQVADEKN------------ 60 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHTTSSEEEEEEEEESSTTTHHHHHHHH-----TTHHEEEHHGGG------------
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHhCCCCceEEEEecccccccccccccc-----CCCCEEeccccC------------
Confidence 48998865555 4466667899999997 5554444433221111000 133333222110
Q ss_pred HHHHHHhccHHHHHHHHHHhhccCCCceEEEeCCCcc-hHHHHHHHcCCceEEEccc
Q 044266 83 TKTMVRVMPEKLEELIENINRLENEKITCVVADGSMG-WVMEVAEKMKLRRAAFWPA 138 (462)
Q Consensus 83 ~~~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~-~~~~~A~~lgiP~v~~~~~ 138 (462)
+.. .+...+ ++++.+++ .+||++|+-.+.. ....+-+.....++-++++
T Consensus 61 ~~~-~~~~~~---~~~~~l~~---~~~Dl~v~~~~~~il~~~~l~~~~~~~iNiHps 110 (181)
T PF00551_consen 61 FQP-RSENDE---ELLELLES---LNPDLIVVAGYGRILPKEFLSIPPYGIINIHPS 110 (181)
T ss_dssp SSS-HHHHHH---HHHHHHHH---TT-SEEEESS-SS---HHHHHHSTTSEEEEESS
T ss_pred CCc-hHhhhh---HHHHHHHh---hccceeehhhhHHHhhhhhhhcccccEEEEeec
Confidence 000 011122 34444444 9999998876543 5555667777777777664
No 195
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=80.62 E-value=4.8 Score=40.67 Aligned_cols=78 Identities=12% Similarity=0.099 Sum_probs=45.4
Q ss_pred ccccCCCCccccee---ccCch-hhhhhhhcCCceecccccc-chhhhHHhHhhhheeeEEeec-C-CCCccCHHHHHHH
Q 044266 339 QKVLTHPSIACFLS---HCGWN-STMEGVSNGVPFLCWPYFA-DQFLNESYICDIWKVGLRFNK-N-KNGIITREEIMKK 411 (462)
Q Consensus 339 ~~ll~~~~~~~~I~---HgG~~-sv~eal~~GvP~l~~P~~~-DQ~~na~~v~~~~g~g~~~~~-~-~~~~~~~~~l~~~ 411 (462)
.+++..+++ +|. +=|+| +++||+++|+|+|+-...+ ..... ..+......|+.+.. . ++-..+.++|+++
T Consensus 469 ~E~~~g~dl--~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~-E~v~~~~~~gi~V~~r~~~~~~e~v~~La~~ 545 (590)
T cd03793 469 EEFVRGCHL--GVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFME-EHIEDPESYGIYIVDRRFKSPDESVQQLTQY 545 (590)
T ss_pred HHHhhhceE--EEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhhH-HHhccCCCceEEEecCCccchHHHHHHHHHH
Confidence 345656666 665 34544 8999999999999986532 22211 111110014555542 1 1123467889999
Q ss_pred HHHHhcCH
Q 044266 412 VDQVLEDE 419 (462)
Q Consensus 412 i~~ll~~~ 419 (462)
|.++++.+
T Consensus 546 m~~~~~~~ 553 (590)
T cd03793 546 MYEFCQLS 553 (590)
T ss_pred HHHHhCCc
Confidence 99988543
No 196
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=80.60 E-value=29 Score=30.20 Aligned_cols=146 Identities=10% Similarity=0.071 Sum_probs=78.9
Q ss_pred CcEEEEeccCccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCcccccCchhHHHHh-cCCceeecccCcccccCCCCcc
Q 044266 270 NSVIYVAFGSFTVFDKEQFQELASGLELTNRPFLWVVRPDITNDAIDAYPEGFQDRV-ATRRQMVGWAPQQKVLTHPSIA 348 (462)
Q Consensus 270 ~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~pq~~ll~~~~~~ 348 (462)
+++++|..|..+ ..-++.|.+.|.++.++- +. ..+.+.+-. .+++....--.+...+..+++
T Consensus 10 k~vlVvGgG~va-------~rk~~~Ll~~ga~VtVvs-p~--------~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~l- 72 (205)
T TIGR01470 10 RAVLVVGGGDVA-------LRKARLLLKAGAQLRVIA-EE--------LESELTLLAEQGGITWLARCFDADILEGAFL- 72 (205)
T ss_pred CeEEEECcCHHH-------HHHHHHHHHCCCEEEEEc-CC--------CCHHHHHHHHcCCEEEEeCCCCHHHhCCcEE-
Confidence 568888887654 233455556677765543 22 112222111 235544322223445655555
Q ss_pred cceeccCchhhhh-----hhhcCCceec--cccccchhhhHHhHhhhheeeEEeecCCCCccCHHHHHHHHHHHhcCH--
Q 044266 349 CFLSHCGWNSTME-----GVSNGVPFLC--WPYFADQFLNESYICDIWKVGLRFNKNKNGIITREEIMKKVDQVLEDE-- 419 (462)
Q Consensus 349 ~~I~HgG~~sv~e-----al~~GvP~l~--~P~~~DQ~~na~~v~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ll~~~-- 419 (462)
+|..-|...+.+ |-..|+|+-+ -|-..|=. .-..+... ++-+.+...+....-+..|++.|.+++.+.
T Consensus 73 -Vi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~f~-~pa~~~~g-~l~iaisT~G~sP~la~~lr~~ie~~l~~~~~ 149 (205)
T TIGR01470 73 -VIAATDDEELNRRVAHAARARGVPVNVVDDPELCSFI-FPSIVDRS-PVVVAISSGGAAPVLARLLRERIETLLPPSLG 149 (205)
T ss_pred -EEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCeEE-EeeEEEcC-CEEEEEECCCCCcHHHHHHHHHHHHhcchhHH
Confidence 888888764444 4457888833 34444422 22233432 455555544334556688999999998532
Q ss_pred HHHHHHHHHHHHHHhH
Q 044266 420 NFKARALDLKETSLNS 435 (462)
Q Consensus 420 ~~~~~a~~l~~~~~~~ 435 (462)
++.+.+.++++.+++.
T Consensus 150 ~~~~~~~~~R~~~k~~ 165 (205)
T TIGR01470 150 DLATLAATWRDAVKKR 165 (205)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 4556666666666543
No 197
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.60 E-value=7.4 Score=35.50 Aligned_cols=92 Identities=13% Similarity=0.091 Sum_probs=54.5
Q ss_pred cccCcccccCCCCcccceeccCchhhhh-hhhcCCceeccccccchhh--hHHhHhhhheeeEEeecCCCCccCHHHHHH
Q 044266 334 GWAPQQKVLTHPSIACFLSHCGWNSTME-GVSNGVPFLCWPYFADQFL--NESYICDIWKVGLRFNKNKNGIITREEIMK 410 (462)
Q Consensus 334 ~~~pq~~ll~~~~~~~~I~HgG~~sv~e-al~~GvP~l~~P~~~DQ~~--na~~v~~~~g~g~~~~~~~~~~~~~~~l~~ 410 (462)
+|-...++|.++++ .|-- .||-.| ++-.|||+|.+|-.+-|+. .|.+=.+-+|+.+.+-. -.+..-..
T Consensus 301 sqqsfadiLH~ada--algm--AGTAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~-----~~aq~a~~ 371 (412)
T COG4370 301 SQQSFADILHAADA--ALGM--AGTATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVR-----PEAQAAAQ 371 (412)
T ss_pred eHHHHHHHHHHHHH--HHHh--ccchHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecC-----CchhhHHH
Confidence 33333445544444 3322 344444 4668999999999998876 45554444677777743 22333334
Q ss_pred HHHHHhcCHHHHHHHHH-HHHHHHh
Q 044266 411 KVDQVLEDENFKARALD-LKETSLN 434 (462)
Q Consensus 411 ~i~~ll~~~~~~~~a~~-l~~~~~~ 434 (462)
+.+++|.|+++..++++ =++++..
T Consensus 372 ~~q~ll~dp~r~~air~nGqrRiGq 396 (412)
T COG4370 372 AVQELLGDPQRLTAIRHNGQRRIGQ 396 (412)
T ss_pred HHHHHhcChHHHHHHHhcchhhccC
Confidence 44459999998887773 3344443
No 198
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=80.54 E-value=15 Score=31.65 Aligned_cols=90 Identities=14% Similarity=0.142 Sum_probs=54.0
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcCCCCCCCCCCCCHHHHHHH
Q 044266 6 HVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIPDGMEPEGDRNDLGMLTKT 85 (462)
Q Consensus 6 ~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~ 85 (462)
.|+|+-..+.|-..-...||..+..+|..|.+++.+.++-...+....+ ....++.+...... .+..+.
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~-a~~l~vp~~~~~~~-------~~~~~~--- 71 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTY-AEILGVPFYVARTE-------SDPAEI--- 71 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHH-HHHHTEEEEESSTT-------SCHHHH---
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHH-HHHhccccchhhcc-------hhhHHH---
Confidence 4567777888999999999999999999999999987642221111000 00027877764321 122221
Q ss_pred HHHhccHHHHHHHHHHhhccCCCceEEEeCCC
Q 044266 86 MVRVMPEKLEELIENINRLENEKITCVVADGS 117 (462)
Q Consensus 86 ~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~ 117 (462)
+++.++.... .+.|+|+.|..
T Consensus 72 --------~~~~l~~~~~---~~~D~vlIDT~ 92 (196)
T PF00448_consen 72 --------AREALEKFRK---KGYDLVLIDTA 92 (196)
T ss_dssp --------HHHHHHHHHH---TTSSEEEEEE-
T ss_pred --------HHHHHHHHhh---cCCCEEEEecC
Confidence 2333344433 78999999953
No 199
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=80.37 E-value=5.8 Score=35.41 Aligned_cols=111 Identities=15% Similarity=0.159 Sum_probs=59.1
Q ss_pred EEEEEcCCCcc-ChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcCC-CCCCCCCCCCHHHHH
Q 044266 6 HVLAFPYPAQG-HVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIPD-GMEPEGDRNDLGMLT 83 (462)
Q Consensus 6 ~Il~~~~~~~G-H~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~-~~~~~~~~~~~~~~~ 83 (462)
|||+.- .-| |---+..|++.|. .+++|+++.+...+..+.... .....++...+.. .+.. ...+....
T Consensus 2 rILlTN--DDGi~a~Gi~aL~~al~-~~~dV~VVAP~~~qSg~s~sl----Tl~~Plr~~~~~~~~~av---~GTPaDCV 71 (252)
T COG0496 2 RILLTN--DDGIHAPGIRALARALR-EGADVTVVAPDREQSGASHSL----TLHEPLRVRQVDNGAYAV---NGTPADCV 71 (252)
T ss_pred eEEEec--CCccCCHHHHHHHHHHh-hCCCEEEEccCCCCccccccc----ccccCceeeEeccceEEe---cCChHHHH
Confidence 566532 233 3334667788887 999999999998876553321 0111233333222 0000 01122111
Q ss_pred HHHHHhccHHHHHHHHHHhhccCCCceEEEeCC----------Cc---chHHHHHHHcCCceEEEccch
Q 044266 84 KTMVRVMPEKLEELIENINRLENEKITCVVADG----------SM---GWVMEVAEKMKLRRAAFWPAA 139 (462)
Q Consensus 84 ~~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~----------~~---~~~~~~A~~lgiP~v~~~~~~ 139 (462)
.. .+..++++ .+||+||+-. .+ ..+..-|..+|||.+.++...
T Consensus 72 ~l-------al~~l~~~------~~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~~~ 127 (252)
T COG0496 72 IL-------GLNELLKE------PRPDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISLAY 127 (252)
T ss_pred HH-------HHHHhccC------CCCCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeeeehh
Confidence 11 12233333 6699998743 22 234555788899999987543
No 200
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=79.63 E-value=6.1 Score=32.59 Aligned_cols=56 Identities=20% Similarity=0.194 Sum_probs=44.9
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcCC
Q 044266 4 RPHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIPD 68 (462)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~ 68 (462)
.+||++...|+.|-..-++.+++.|.+.|+.|-=+-++...+.=... |++.+++..
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~---------GF~Ivdl~t 60 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRI---------GFKIVDLAT 60 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEe---------eeEEEEccC
Confidence 57999999999999999999999999999999877666655332222 788888764
No 201
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=79.48 E-value=5.2 Score=35.98 Aligned_cols=95 Identities=13% Similarity=0.158 Sum_probs=55.6
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcCCCCCCCCCCCCHHHHHH
Q 044266 5 PHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIPDGMEPEGDRNDLGMLTK 84 (462)
Q Consensus 5 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~ 84 (462)
|||+++...+-| ..||+.|.++|+ |.+-...+....+.... .++..... .++ .
T Consensus 1 m~ILvlgGTtE~-----r~la~~L~~~g~-v~~sv~t~~g~~~~~~~------~~~~~v~~--G~l------g------- 53 (249)
T PF02571_consen 1 MKILVLGGTTEG-----RKLAERLAEAGY-VIVSVATSYGGELLKPE------LPGLEVRV--GRL------G------- 53 (249)
T ss_pred CEEEEEechHHH-----HHHHHHHHhcCC-EEEEEEhhhhHhhhccc------cCCceEEE--CCC------C-------
Confidence 478887655555 478999999999 66555555544443220 01222221 000 0
Q ss_pred HHHHhccHHHHHHHHHHhhccCCCceEEE--eCCCcc----hHHHHHHHcCCceEEEcc
Q 044266 85 TMVRVMPEKLEELIENINRLENEKITCVV--ADGSMG----WVMEVAEKMKLRRAAFWP 137 (462)
Q Consensus 85 ~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi--~D~~~~----~~~~~A~~lgiP~v~~~~ 137 (462)
-...+.++++. .++|+|| +.+|.. -+..+|+++|||++.|-.
T Consensus 54 -----~~~~l~~~l~~------~~i~~vIDATHPfA~~is~na~~a~~~~~ipylR~eR 101 (249)
T PF02571_consen 54 -----DEEGLAEFLRE------NGIDAVIDATHPFAAEISQNAIEACRELGIPYLRFER 101 (249)
T ss_pred -----CHHHHHHHHHh------CCCcEEEECCCchHHHHHHHHHHHHhhcCcceEEEEc
Confidence 12334455555 8999988 333333 255779999999999743
No 202
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=79.39 E-value=17 Score=35.84 Aligned_cols=27 Identities=11% Similarity=0.203 Sum_probs=23.1
Q ss_pred CCceEEEeCCCcchHHHHHHHcCCceEEEc
Q 044266 107 EKITCVVADGSMGWVMEVAEKMKLRRAAFW 136 (462)
Q Consensus 107 ~~~Dlvi~D~~~~~~~~~A~~lgiP~v~~~ 136 (462)
.+||++|... ....+|+++|||++.+.
T Consensus 376 ~~pDliiG~s---~~~~~a~~~gip~v~~~ 402 (435)
T cd01974 376 EPVDLLIGNT---YGKYIARDTDIPLVRFG 402 (435)
T ss_pred cCCCEEEECc---cHHHHHHHhCCCEEEee
Confidence 8999999985 46788999999998764
No 203
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=79.36 E-value=9.7 Score=32.58 Aligned_cols=99 Identities=10% Similarity=0.112 Sum_probs=49.8
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhC--CCEEEEEeCCcchH-HHHHhhcCCCCCCCCeEEEEcCCCCCCCCCCCCHHHHH
Q 044266 7 VLAFPYPAQGHVIPLLEISQCLVKH--GVKVTFLNTDYNHK-RVVNALGQNNYIGDQIKLVSIPDGMEPEGDRNDLGMLT 83 (462)
Q Consensus 7 Il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~-~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~ 83 (462)
++.+=..+.|-+....+|+++|.++ |+.|.+-++...-. .+.+... +.+...-+|-+
T Consensus 23 ~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~------~~v~~~~~P~D-------------- 82 (186)
T PF04413_consen 23 LIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLP------DRVDVQYLPLD-------------- 82 (186)
T ss_dssp -EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-G------GG-SEEE---S--------------
T ss_pred cEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCC------CCeEEEEeCcc--------------
Confidence 3444456789999999999999986 88888887755433 3333210 12332223321
Q ss_pred HHHHHhccHHHHHHHHHHhhccCCCceEEEeCCCcc--hHHHHHHHcCCceEEEcc
Q 044266 84 KTMVRVMPEKLEELIENINRLENEKITCVVADGSMG--WVMEVAEKMKLRRAAFWP 137 (462)
Q Consensus 84 ~~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~--~~~~~A~~lgiP~v~~~~ 137 (462)
....++.+++. ++||++|.--... ..+..|++.|||++.+.-
T Consensus 83 ------~~~~~~rfl~~------~~P~~~i~~EtElWPnll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 83 ------FPWAVRRFLDH------WRPDLLIWVETELWPNLLREAKRRGIPVVLVNA 126 (186)
T ss_dssp ------SHHHHHHHHHH------H--SEEEEES----HHHHHH-----S-EEEEEE
T ss_pred ------CHHHHHHHHHH------hCCCEEEEEccccCHHHHHHHhhcCCCEEEEee
Confidence 12335566666 8899888555444 445667888999998754
No 204
>PRK06988 putative formyltransferase; Provisional
Probab=79.16 E-value=18 Score=33.81 Aligned_cols=34 Identities=26% Similarity=0.436 Sum_probs=24.4
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCc
Q 044266 4 RPHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDY 42 (462)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 42 (462)
++||+|+..+. -.+...+.|.++||+|..+.+..
T Consensus 2 ~mkIvf~Gs~~-----~a~~~L~~L~~~~~~i~~Vvt~~ 35 (312)
T PRK06988 2 KPRAVVFAYHN-----VGVRCLQVLLARGVDVALVVTHE 35 (312)
T ss_pred CcEEEEEeCcH-----HHHHHHHHHHhCCCCEEEEEcCC
Confidence 46999986543 34556677888899988777653
No 205
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=78.93 E-value=8.6 Score=32.01 Aligned_cols=109 Identities=22% Similarity=0.207 Sum_probs=58.1
Q ss_pred EEEEcCCCccChHH----HHHHHHHHHh-CCCEEEEEeCCc---chHHHHHhhcCCCCCCCCe-EEEEcCCCCCCCCCCC
Q 044266 7 VLAFPYPAQGHVIP----LLEISQCLVK-HGVKVTFLNTDY---NHKRVVNALGQNNYIGDQI-KLVSIPDGMEPEGDRN 77 (462)
Q Consensus 7 Il~~~~~~~GH~~p----~l~La~~L~~-rGh~Vt~~~~~~---~~~~v~~~~~~~~~~~~~i-~~~~i~~~~~~~~~~~ 77 (462)
|+++.-...|.+++ ++..|++|++ .|.+|+.++... ..+.+++..... |. +.+.+.+..... .
T Consensus 2 ilv~~e~~~~~l~~~~~e~l~~A~~La~~~g~~v~av~~G~~~~~~~~l~~~l~~~-----G~d~v~~~~~~~~~~---~ 73 (164)
T PF01012_consen 2 ILVFAEHRDGRLNPVSLEALEAARRLAEALGGEVTAVVLGPAEEAAEALRKALAKY-----GADKVYHIDDPALAE---Y 73 (164)
T ss_dssp EEEEE-EETCEE-HHHHHHHHHHHHHHHCTTSEEEEEEEETCCCHHHHHHHHHHST-----TESEEEEEE-GGGTT---C
T ss_pred EEEEEECCCCccCHHHHHHHHHHHHHHhhcCCeEEEEEEecchhhHHHHhhhhhhc-----CCcEEEEecCccccc---c
Confidence 45444444555555 7888999987 578888887653 223322221101 44 334333211110 0
Q ss_pred CHHHHHHHHHHhccHHHHHHHHHHhhccCCCceEEEeCCCcc---hHHHHHHHcCCceEEEcc
Q 044266 78 DLGMLTKTMVRVMPEKLEELIENINRLENEKITCVVADGSMG---WVMEVAEKMKLRRAAFWP 137 (462)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~---~~~~~A~~lgiP~v~~~~ 137 (462)
+. ......+.++++. .+||+|+.-.... .+..+|.++|.|++.-..
T Consensus 74 ~~--------~~~a~~l~~~~~~------~~~~lVl~~~t~~g~~la~~lA~~L~~~~v~~v~ 122 (164)
T PF01012_consen 74 DP--------EAYADALAELIKE------EGPDLVLFGSTSFGRDLAPRLAARLGAPLVTDVT 122 (164)
T ss_dssp -H--------HHHHHHHHHHHHH------HT-SEEEEESSHHHHHHHHHHHHHHT-EEEEEEE
T ss_pred CH--------HHHHHHHHHHHHh------cCCCEEEEcCcCCCCcHHHHHHHHhCCCccceEE
Confidence 11 1122234455555 7999999886554 577889999999998544
No 206
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=78.91 E-value=4.7 Score=39.77 Aligned_cols=64 Identities=16% Similarity=0.158 Sum_probs=44.4
Q ss_pred hhhhhhhcCCceeccccccchhhhHHhHhhhheeeEEeecCCCCccCHHHHHHHHHHHhcCHHHHHHHHHHH
Q 044266 358 STMEGVSNGVPFLCWPYFADQFLNESYICDIWKVGLRFNKNKNGIITREEIMKKVDQVLEDENFKARALDLK 429 (462)
Q Consensus 358 sv~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~ 429 (462)
++.||+++|+|++.. ++-.-+.-|+. .--|...+. ..-....+++++.++..|++++.++.+=+
T Consensus 381 v~IEAMa~glPvvAt----~~GGP~EiV~~-~~tG~l~dp---~~e~~~~~a~~~~kl~~~p~l~~~~~~~G 444 (495)
T KOG0853|consen 381 VPIEAMACGLPVVAT----NNGGPAEIVVH-GVTGLLIDP---GQEAVAELADALLKLRRDPELWARMGKNG 444 (495)
T ss_pred eeHHHHhcCCCEEEe----cCCCceEEEEc-CCcceeeCC---chHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 689999999999988 44444445555 355666642 12223379999999999998876665444
No 207
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=77.79 E-value=6.3 Score=36.82 Aligned_cols=34 Identities=12% Similarity=0.096 Sum_probs=26.0
Q ss_pred CCceEEEe-CCCcc-hHHHHHHHcCCceEEEccchh
Q 044266 107 EKITCVVA-DGSMG-WVMEVAEKMKLRRAAFWPAAA 140 (462)
Q Consensus 107 ~~~Dlvi~-D~~~~-~~~~~A~~lgiP~v~~~~~~~ 140 (462)
..||+||+ |+..- .++.=|.++|||+|.+.-+..
T Consensus 151 ~~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn~ 186 (326)
T PRK12311 151 GLPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTNC 186 (326)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCCC
Confidence 47998774 55443 788889999999999876554
No 208
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=77.38 E-value=7.9 Score=36.42 Aligned_cols=132 Identities=10% Similarity=0.062 Sum_probs=74.4
Q ss_pred CcEEE-EeccCc--cccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCcccccCchhHHHHhcCCceeecc--cCcc-cccC
Q 044266 270 NSVIY-VAFGSF--TVFDKEQFQELASGLELTNRPFLWVVRPDITNDAIDAYPEGFQDRVATRRQMVGW--APQQ-KVLT 343 (462)
Q Consensus 270 ~~~v~-vs~Gs~--~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~pq~-~ll~ 343 (462)
++.|. +..||. -..+.+.+.++++.+.+.+.++++..++. ...+..+.+.+. ..++.+.+- +.+. .+++
T Consensus 178 ~~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl~~G~~----~e~~~~~~i~~~-~~~~~l~g~~sL~elaali~ 252 (322)
T PRK10964 178 GPYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKLPWGAE----HEEQRAKRLAEG-FPYVEVLPKLSLEQVARVLA 252 (322)
T ss_pred CCeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEEeCCCH----HHHHHHHHHHcc-CCcceecCCCCHHHHHHHHH
Confidence 44554 444443 23678889999999877677776554433 111111222111 123334332 3343 6888
Q ss_pred CCCcccceeccCchhhhhhhhcCCceecc--ccccch----hhhHHhHhhhheeeEEeecCCCCccCHHHHHHHHHHHhc
Q 044266 344 HPSIACFLSHCGWNSTMEGVSNGVPFLCW--PYFADQ----FLNESYICDIWKVGLRFNKNKNGIITREEIMKKVDQVLE 417 (462)
Q Consensus 344 ~~~~~~~I~HgG~~sv~eal~~GvP~l~~--P~~~DQ----~~na~~v~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ll~ 417 (462)
++++ +|+. -.|.+.=|.+.|+|+|++ |..... ..|...+. .....+ .+++++++.++++++|.
T Consensus 253 ~a~l--~I~n-DSGp~HlA~A~g~p~valfGpt~p~~~~p~~~~~~~~~---~~~~cm-----~~I~~e~V~~~~~~~l~ 321 (322)
T PRK10964 253 GAKA--VVSV-DTGLSHLTAALDRPNITLYGPTDPGLIGGYGKNQHACR---SPGKSM-----ADLSAETVFQKLETLIS 321 (322)
T ss_pred hCCE--EEec-CCcHHHHHHHhCCCEEEEECCCCcccccCCCCCceeec---CCCccc-----ccCCHHHHHHHHHHHhh
Confidence 8887 8874 467889999999999887 322111 01111111 011122 56899999999988773
No 209
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=77.20 E-value=25 Score=32.98 Aligned_cols=32 Identities=19% Similarity=0.185 Sum_probs=23.2
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCC
Q 044266 5 PHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTD 41 (462)
Q Consensus 5 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 41 (462)
|||+|+..+.. .+...++|.++||+|..+.+.
T Consensus 1 mkIvf~Gs~~~-----a~~~L~~L~~~~~~i~~Vvt~ 32 (313)
T TIGR00460 1 LRIVFFGTPTF-----SLPVLEELREDNFEVVGVVTQ 32 (313)
T ss_pred CEEEEECCCHH-----HHHHHHHHHhCCCcEEEEEcC
Confidence 48998765543 366678888899999876654
No 210
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=77.12 E-value=26 Score=29.61 Aligned_cols=110 Identities=19% Similarity=0.235 Sum_probs=64.6
Q ss_pred cChHHHHHHHHHH-HhCCCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcCCC-------------CCCC-------C
Q 044266 16 GHVIPLLEISQCL-VKHGVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIPDG-------------MEPE-------G 74 (462)
Q Consensus 16 GH~~p~l~La~~L-~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~-------------~~~~-------~ 74 (462)
+.+.-.+..|+.| .+.|.+|.+... .....+++.. ++.+..++.. .... .
T Consensus 17 ~~~e~~v~~a~~~~~~~g~dViIsRG-~ta~~lr~~~--------~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~ 87 (176)
T PF06506_consen 17 ASLEEAVEEARQLLESEGADVIISRG-GTAELLRKHV--------SIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPN 87 (176)
T ss_dssp --HHHHHHHHHHHHTTTT-SEEEEEH-HHHHHHHCC---------SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS
T ss_pred ecHHHHHHHHHHhhHhcCCeEEEECC-HHHHHHHHhC--------CCCEEEECCCHhHHHHHHHHHHhcCCcEEEEeccc
Confidence 5677788999999 789999987776 4666676652 5666666611 0000 0
Q ss_pred CCCCHHHHHHHHHHh--------ccHHHHHHHHHHhhccCCCceEEEeCCCcchHHHHHHHcCCceEEEccchhH
Q 044266 75 DRNDLGMLTKTMVRV--------MPEKLEELIENINRLENEKITCVVADGSMGWVMEVAEKMKLRRAAFWPAAAG 141 (462)
Q Consensus 75 ~~~~~~~~~~~~~~~--------~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~~ 141 (462)
...+... +..++.. ....++..+..++. .+.|+||.+. .+..+|+++|+|++.+.++...
T Consensus 88 ~~~~~~~-~~~ll~~~i~~~~~~~~~e~~~~i~~~~~---~G~~viVGg~---~~~~~A~~~gl~~v~i~sg~es 155 (176)
T PF06506_consen 88 IIPGLES-IEELLGVDIKIYPYDSEEEIEAAIKQAKA---EGVDVIVGGG---VVCRLARKLGLPGVLIESGEES 155 (176)
T ss_dssp -SCCHHH-HHHHHT-EEEEEEESSHHHHHHHHHHHHH---TT--EEEESH---HHHHHHHHTTSEEEESS--HHH
T ss_pred ccHHHHH-HHHHhCCceEEEEECCHHHHHHHHHHHHH---cCCcEEECCH---HHHHHHHHcCCcEEEEEecHHH
Confidence 1122222 2222221 14567777888777 8999999995 3578899999999998775543
No 211
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=76.21 E-value=16 Score=33.13 Aligned_cols=36 Identities=19% Similarity=0.103 Sum_probs=31.0
Q ss_pred EEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcc
Q 044266 8 LAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYN 43 (462)
Q Consensus 8 l~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 43 (462)
+|..-|+.|.......+|..+++.|++|.++..+.-
T Consensus 4 ~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~ 39 (254)
T cd00550 4 FFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPA 39 (254)
T ss_pred EEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCc
Confidence 455567779999999999999999999999998764
No 212
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=76.11 E-value=27 Score=34.30 Aligned_cols=90 Identities=16% Similarity=0.139 Sum_probs=53.4
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCc----chHHHHHhhcCCCCCCCCeEEEEcCCCCCCCCCCCCHHH
Q 044266 6 HVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDY----NHKRVVNALGQNNYIGDQIKLVSIPDGMEPEGDRNDLGM 81 (462)
Q Consensus 6 ~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~----~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~ 81 (462)
|+.+...+.. .+.+++.|.+-|-+|..+++.. +.+...+... .+ ...... ..++
T Consensus 287 kv~v~g~~~~-----~~~l~~~l~elGmevv~~~t~~~~~~~~~~~~~~~~-------~~-----~~~v~~---~~dl-- 344 (422)
T TIGR02015 287 RVTVSGYEGS-----ELLVVRLLLESGADVPYVGTAIPRTAWGAEDKRWLE-------ML-----GVEVKY---RASL-- 344 (422)
T ss_pred eEEEEcCCcc-----HHHHHHHHHHCCCEEEEEecCCCCccccHHHHHHHH-------hc-----CCCcee---ccCH--
Confidence 6666665555 8899999999999999887763 2222222100 00 000000 0111
Q ss_pred HHHHHHHhccHHHHHHHHHHhhccCCCceEEEeCCCcchHHHHHHHcCCceEEEc
Q 044266 82 LTKTMVRVMPEKLEELIENINRLENEKITCVVADGSMGWVMEVAEKMKLRRAAFW 136 (462)
Q Consensus 82 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~~~~~~A~~lgiP~v~~~ 136 (462)
.+.++.+++ .+||++|.. .-...+|+++|||++.+.
T Consensus 345 -------------~~~~~~l~~---~~pDllig~---s~~~~~A~k~gIP~vr~g 380 (422)
T TIGR02015 345 -------------EDDMEAVLE---FEPDLAIGT---TPLVQFAKEHGIPALYFT 380 (422)
T ss_pred -------------HHHHHHHhh---CCCCEEEcC---CcchHHHHHcCCCEEEec
Confidence 111133333 899999988 335667999999999864
No 213
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=75.78 E-value=11 Score=29.21 Aligned_cols=42 Identities=24% Similarity=0.338 Sum_probs=35.7
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHH
Q 044266 6 HVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRV 47 (462)
Q Consensus 6 ~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v 47 (462)
|+++.+.+..-|-.-+..++..|.++||+|.++......+.+
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l 43 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDANVPPEEL 43 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESSB-HHHH
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCCCCHHHH
Confidence 788999999999999999999999999999999766544433
No 214
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=75.65 E-value=28 Score=26.79 Aligned_cols=85 Identities=14% Similarity=0.171 Sum_probs=53.9
Q ss_pred ChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHhccHHHHH
Q 044266 17 HVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIPDGMEPEGDRNDLGMLTKTMVRVMPEKLEE 96 (462)
Q Consensus 17 H~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (462)
+-.-++.+|+.|.+.|+++. +++...+.+++. |+.+..+...-. + ..+.+.+
T Consensus 10 ~K~~~~~~a~~l~~~G~~i~--AT~gTa~~L~~~---------Gi~~~~v~~~~~-~----------------g~~~i~~ 61 (112)
T cd00532 10 VKAMLVDLAPKLSSDGFPLF--ATGGTSRVLADA---------GIPVRAVSKRHE-D----------------GEPTVDA 61 (112)
T ss_pred cHHHHHHHHHHHHHCCCEEE--ECcHHHHHHHHc---------CCceEEEEecCC-C----------------CCcHHHH
Confidence 55678899999999999883 566677888876 777665532211 0 1122333
Q ss_pred HHHHHhhccCCCceEEEeCC--Cc--------chHHHHHHHcCCceEE
Q 044266 97 LIENINRLENEKITCVVADG--SM--------GWVMEVAEKMKLRRAA 134 (462)
Q Consensus 97 l~~~l~~~~~~~~Dlvi~D~--~~--------~~~~~~A~~lgiP~v~ 134 (462)
+++. ..+.|+||.-+ .. +.....|-..|||+++
T Consensus 62 ~i~~-----~g~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~T 104 (112)
T cd00532 62 AIAE-----KGKFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVTT 104 (112)
T ss_pred HHhC-----CCCEEEEEEcCCCCcccccCCChHHHHHHHHHcCCCEEE
Confidence 3322 04889998733 22 1334568888999987
No 215
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=75.57 E-value=44 Score=30.07 Aligned_cols=110 Identities=11% Similarity=0.067 Sum_probs=58.4
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcCCCCCCCCCCCCHHHHHHH
Q 044266 6 HVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIPDGMEPEGDRNDLGMLTKT 85 (462)
Q Consensus 6 ~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~ 85 (462)
|||+.---+. |---+..|++.|.+. |+|+++.+...+....... .....+++..+.++. -.....+......
T Consensus 2 ~ILlTNDDGi-~a~Gi~aL~~~l~~~-~~V~VvAP~~~qSg~g~ai----t~~~pl~~~~~~~~~--~~v~GTPaDcV~~ 73 (250)
T PRK00346 2 RILLTNDDGI-HAPGIRALAEALREL-ADVTVVAPDRERSGASHSL----TLTRPLRVEKVDNGF--YAVDGTPTDCVHL 73 (250)
T ss_pred eEEEECCCCC-CChhHHHHHHHHHhC-CCEEEEeCCCCCcCCcccc----cCCCCeEEEEecCCe--EEECCcHHHHHHH
Confidence 6666432221 333477889999888 7999999987765443321 111245555543110 0001112221111
Q ss_pred HHHhccHHHHHHHHHHhhccCCCceEEEeCC----------Ccc---hHHHHHHHcCCceEEEcc
Q 044266 86 MVRVMPEKLEELIENINRLENEKITCVVADG----------SMG---WVMEVAEKMKLRRAAFWP 137 (462)
Q Consensus 86 ~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~----------~~~---~~~~~A~~lgiP~v~~~~ 137 (462)
-+..+-. .+||+||+-. ++. .+..-|...|||.+.++.
T Consensus 74 -----------gl~~l~~---~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~ 124 (250)
T PRK00346 74 -----------ALNGLLD---PKPDLVVSGINHGANLGDDVLYSGTVAAAMEGALLGIPAIAVSL 124 (250)
T ss_pred -----------HHHhhcc---CCCCEEEeCCccCCCCCCCeeccHHHHHHHHHHhcCCCeEEEec
Confidence 1222222 5899998743 222 344557778999999875
No 216
>PRK05973 replicative DNA helicase; Provisional
Probab=74.73 E-value=37 Score=30.30 Aligned_cols=45 Identities=24% Similarity=0.341 Sum_probs=36.8
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh
Q 044266 6 HVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNA 50 (462)
Q Consensus 6 ~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 50 (462)
=+++...|+.|=..-.+.++...+++|+.|.|++.....+.+.+.
T Consensus 66 l~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i~~R 110 (237)
T PRK05973 66 LVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDVRDR 110 (237)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Confidence 356777788899999999999998899999999988776555443
No 217
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=74.69 E-value=31 Score=33.83 Aligned_cols=28 Identities=4% Similarity=-0.016 Sum_probs=23.6
Q ss_pred CCceEEEeCCCcchHHHHHHHcCCceEEEcc
Q 044266 107 EKITCVVADGSMGWVMEVAEKMKLRRAAFWP 137 (462)
Q Consensus 107 ~~~Dlvi~D~~~~~~~~~A~~lgiP~v~~~~ 137 (462)
.+||++|.. ..+..+|+++|||++.+..
T Consensus 349 ~~pDl~Ig~---s~~~~~a~~~giP~~r~~~ 376 (416)
T cd01980 349 YRPDLAIGT---TPLVQYAKEKGIPALYYTN 376 (416)
T ss_pred cCCCEEEeC---ChhhHHHHHhCCCEEEecC
Confidence 899999988 4467789999999998653
No 218
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=74.22 E-value=6.5 Score=28.15 Aligned_cols=35 Identities=14% Similarity=0.112 Sum_probs=30.6
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEe
Q 044266 5 PHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLN 39 (462)
Q Consensus 5 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~ 39 (462)
.-++++..+...|...+-.+|+.|++.|+.|...=
T Consensus 16 k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~D 50 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAYD 50 (79)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 45778888889999999999999999999998654
No 219
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=74.21 E-value=40 Score=26.39 Aligned_cols=42 Identities=17% Similarity=0.199 Sum_probs=36.7
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHH
Q 044266 6 HVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRV 47 (462)
Q Consensus 6 ~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v 47 (462)
||++.+.++-.|-.-..-++.-|...|++|.++......+.+
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~ 42 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEEI 42 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 688999999999999999999999999999999987654443
No 220
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=74.20 E-value=21 Score=30.29 Aligned_cols=39 Identities=26% Similarity=0.314 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcC
Q 044266 18 VIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIP 67 (462)
Q Consensus 18 ~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~ 67 (462)
-.-+..+|+.|.+.|+++. ++....+.+++. |+.+..+.
T Consensus 10 K~~l~~lAk~L~~lGf~I~--AT~GTAk~L~e~---------GI~v~~V~ 48 (187)
T cd01421 10 KTGLVEFAKELVELGVEIL--STGGTAKFLKEA---------GIPVTDVS 48 (187)
T ss_pred cccHHHHHHHHHHCCCEEE--EccHHHHHHHHc---------CCeEEEhh
Confidence 4568899999999999984 666788889887 78777765
No 221
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=74.05 E-value=20 Score=35.16 Aligned_cols=40 Identities=10% Similarity=0.163 Sum_probs=34.9
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchH
Q 044266 6 HVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHK 45 (462)
Q Consensus 6 ~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 45 (462)
.|+|+..++.|-..-...||..|.++|+.|.+++.+.++.
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~ 141 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRA 141 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccch
Confidence 4667777888999999999999999999999999987764
No 222
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=73.94 E-value=16 Score=30.40 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=23.8
Q ss_pred CCCccChHHHHHHHHHHHhCCCEEEEE
Q 044266 12 YPAQGHVIPLLEISQCLVKHGVKVTFL 38 (462)
Q Consensus 12 ~~~~GH~~p~l~La~~L~~rGh~Vt~~ 38 (462)
.++-|-..-.+.|++.|.++|.+|.++
T Consensus 6 ~~~~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 6 DTGVGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred CCCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 456688889999999999999999986
No 223
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=73.64 E-value=52 Score=34.74 Aligned_cols=103 Identities=17% Similarity=0.242 Sum_probs=62.0
Q ss_pred EEEEEcCCC-ccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcCCCCCCCCCCCCHHHHHH
Q 044266 6 HVLAFPYPA-QGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIPDGMEPEGDRNDLGMLTK 84 (462)
Q Consensus 6 ~Il~~~~~~-~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~ 84 (462)
.|++.+..+ .|=..-.+.|++.|.++|.+|.++=+-... ++ .......
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKPi~~~---------------p~----------------~~~~~~~ 52 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKPIAQP---------------PL----------------TMSEVEA 52 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCCcccC---------------CC----------------CHHHHHH
Confidence 566664444 588889999999999999999998753221 00 0000000
Q ss_pred HHHH-hccHHHHHHHHHHhhccCCCceEEEeCCCcc---------hHHHHHHHcCCceEEEccchh
Q 044266 85 TMVR-VMPEKLEELIENINRLENEKITCVVADGSMG---------WVMEVAEKMKLRRAAFWPAAA 140 (462)
Q Consensus 85 ~~~~-~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~---------~~~~~A~~lgiP~v~~~~~~~ 140 (462)
.+.. .....++.+++.+.... .+.|+||+|...+ ....+|+.++.|++.+.....
T Consensus 53 ~~~~~~~~~~~~~I~~~~~~l~-~~~D~VLIEGa~~~~~~~~~~~~na~iA~~L~~pVILV~~~~~ 117 (684)
T PRK05632 53 LLASGQLDELLEEIVARYHALA-KDCDVVLVEGLDPTRKHPFEFSLNAEIAKNLGAEVVLVSSGGN 117 (684)
T ss_pred HHhccCChHHHHHHHHHHHHhc-cCCCEEEEeCcCCCCcCcccCchHHHHHHHhCCCEEEEECCCC
Confidence 0000 11122333333333222 6899999887643 246779999999999887653
No 224
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=73.40 E-value=61 Score=28.11 Aligned_cols=147 Identities=10% Similarity=0.075 Sum_probs=80.4
Q ss_pred CCcEEEEeccCccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCcccccCchhHHHHhc-CCceeecccCcccccCCCCc
Q 044266 269 QNSVIYVAFGSFTVFDKEQFQELASGLELTNRPFLWVVRPDITNDAIDAYPEGFQDRVA-TRRQMVGWAPQQKVLTHPSI 347 (462)
Q Consensus 269 ~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~pq~~ll~~~~~ 347 (462)
++.++.|..|.++ ...++.|...+.++.++ .+. +.+.+.+..+ +.+.......+...+..+++
T Consensus 10 ~k~vLVIGgG~va-------~~ka~~Ll~~ga~V~VI-s~~--------~~~~l~~l~~~~~i~~~~~~~~~~~l~~adl 73 (202)
T PRK06718 10 NKRVVIVGGGKVA-------GRRAITLLKYGAHIVVI-SPE--------LTENLVKLVEEGKIRWKQKEFEPSDIVDAFL 73 (202)
T ss_pred CCEEEEECCCHHH-------HHHHHHHHHCCCeEEEE-cCC--------CCHHHHHHHhCCCEEEEecCCChhhcCCceE
Confidence 3668888888654 24455565667666554 322 1122222222 23444444444556666666
Q ss_pred ccceeccCchhhhhhhh----cCCceecc--ccccchhhhHHhHhhhheeeEEeecCCCCccCHHHHHHHHHHHhcCH--
Q 044266 348 ACFLSHCGWNSTMEGVS----NGVPFLCW--PYFADQFLNESYICDIWKVGLRFNKNKNGIITREEIMKKVDQVLEDE-- 419 (462)
Q Consensus 348 ~~~I~HgG~~sv~eal~----~GvP~l~~--P~~~DQ~~na~~v~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ll~~~-- 419 (462)
+|.--+...+.+.++ .++++-+. |-..| +..-..+... ++-+.+...+....-+..|++.|..++...
T Consensus 74 --ViaaT~d~elN~~i~~~a~~~~lvn~~d~~~~~~-f~~Pa~~~~g-~l~iaIsT~G~sP~la~~lr~~ie~~~~~~~~ 149 (202)
T PRK06718 74 --VIAATNDPRVNEQVKEDLPENALFNVITDAESGN-VVFPSALHRG-KLTISVSTDGASPKLAKKIRDELEALYDESYE 149 (202)
T ss_pred --EEEcCCCHHHHHHHHHHHHhCCcEEECCCCccCe-EEEeeEEEcC-CeEEEEECCCCChHHHHHHHHHHHHHcchhHH
Confidence 888877777666655 45555443 11111 1222333432 555555543334455678899998888432
Q ss_pred HHHHHHHHHHHHHHhH
Q 044266 420 NFKARALDLKETSLNS 435 (462)
Q Consensus 420 ~~~~~a~~l~~~~~~~ 435 (462)
.+-+.+.++++.+++.
T Consensus 150 ~~~~~~~~~R~~~k~~ 165 (202)
T PRK06718 150 SYIDFLYECRQKIKEL 165 (202)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4666777777777653
No 225
>PRK10867 signal recognition particle protein; Provisional
Probab=73.32 E-value=24 Score=34.71 Aligned_cols=42 Identities=14% Similarity=0.188 Sum_probs=35.6
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhC-CCEEEEEeCCcchHHH
Q 044266 6 HVLAFPYPAQGHVIPLLEISQCLVKH-GVKVTFLNTDYNHKRV 47 (462)
Q Consensus 6 ~Il~~~~~~~GH~~p~l~La~~L~~r-Gh~Vt~~~~~~~~~~v 47 (462)
-|+++..++.|-..-...||..|+++ |+.|.+++.+.++...
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa 144 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAA 144 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHH
Confidence 45677777889999999999999998 9999999998776543
No 226
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=73.29 E-value=5 Score=36.47 Aligned_cols=52 Identities=17% Similarity=0.118 Sum_probs=36.6
Q ss_pred ccceeccCchhhhhhhh------cCCceeccccccchhhhHHhHhhhheeeEEeecCCCCccCHHHHHHHHHHHhcCH
Q 044266 348 ACFLSHCGWNSTMEGVS------NGVPFLCWPYFADQFLNESYICDIWKVGLRFNKNKNGIITREEIMKKVDQVLEDE 419 (462)
Q Consensus 348 ~~~I~HgG~~sv~eal~------~GvP~l~~P~~~DQ~~na~~v~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ll~~~ 419 (462)
+++|+-||-||++.++. .++|++.+-. - .+|.- ...+++++.++++++++++
T Consensus 37 Dlvi~iGGDGT~L~a~~~~~~~~~~iPilGIN~--------G------~lGFL------~~~~~~~~~~~l~~i~~g~ 94 (265)
T PRK04885 37 DIVISVGGDGTLLSAFHRYENQLDKVRFVGVHT--------G------HLGFY------TDWRPFEVDKLVIALAKDP 94 (265)
T ss_pred CEEEEECCcHHHHHHHHHhcccCCCCeEEEEeC--------C------Cceec------ccCCHHHHHHHHHHHHcCC
Confidence 44999999999999986 4889887721 1 12222 2256788888888888653
No 227
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=73.27 E-value=58 Score=27.78 Aligned_cols=99 Identities=14% Similarity=0.181 Sum_probs=63.9
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCc----c-hHHHHHhhcCCCCCCCCeEEEEcCCCCCCCCCCCCHH
Q 044266 6 HVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDY----N-HKRVVNALGQNNYIGDQIKLVSIPDGMEPEGDRNDLG 80 (462)
Q Consensus 6 ~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~----~-~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~ 80 (462)
=|.+++..+.|-....+.+|-+-.-+|.+|.++-.-. + ........ ..++.|+..++++....... .
T Consensus 30 li~V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQFiKg~~~~GE~~~~~~~------~~~v~~~~~~~g~tw~~~~~--~ 101 (198)
T COG2109 30 LIIVFTGNGKGKTTAALGLALRALGHGLRVGVVQFIKGGWKYGEEAALEKF------GLGVEFHGMGEGFTWETQDR--E 101 (198)
T ss_pred eEEEEecCCCChhHHHHHHHHHHhcCCCEEEEEEEeecCcchhHHHHHHhh------ccceeEEecCCceeCCCcCc--H
Confidence 3678888999999999888888888888888775211 1 12222221 13689999888877664221 1
Q ss_pred HHHHHHHHhccHHHHHHHHHHhhccCCCceEEEeCCCcc
Q 044266 81 MLTKTMVRVMPEKLEELIENINRLENEKITCVVADGSMG 119 (462)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~ 119 (462)
+ +. ..+...++...+.+.+ .++|+||.|-+.+
T Consensus 102 ~--d~--~aa~~~w~~a~~~l~~---~~ydlviLDEl~~ 133 (198)
T COG2109 102 A--DI--AAAKAGWEHAKEALAD---GKYDLVILDELNY 133 (198)
T ss_pred H--HH--HHHHHHHHHHHHHHhC---CCCCEEEEehhhH
Confidence 1 11 2334445555566665 8999999996554
No 228
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=73.16 E-value=33 Score=30.06 Aligned_cols=47 Identities=15% Similarity=0.126 Sum_probs=40.3
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh
Q 044266 4 RPHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNA 50 (462)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 50 (462)
+.||++.+.++-.|-....-++..|..+|++|+++...-..+.+.+.
T Consensus 88 ~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~ 134 (213)
T cd02069 88 KGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEA 134 (213)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHH
Confidence 56999999999999999999999999999999999987655544443
No 229
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=72.71 E-value=5 Score=33.81 Aligned_cols=36 Identities=14% Similarity=0.076 Sum_probs=25.1
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcch
Q 044266 5 PHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNH 44 (462)
Q Consensus 5 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 44 (462)
|||.++...+ ++- -.++++..+|||+||.++-...+
T Consensus 1 mKIaiIgAsG--~~G--s~i~~EA~~RGHeVTAivRn~~K 36 (211)
T COG2910 1 MKIAIIGASG--KAG--SRILKEALKRGHEVTAIVRNASK 36 (211)
T ss_pred CeEEEEecCc--hhH--HHHHHHHHhCCCeeEEEEeChHh
Confidence 4777655433 322 35788999999999999976544
No 230
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=72.33 E-value=54 Score=30.92 Aligned_cols=82 Identities=10% Similarity=0.043 Sum_probs=61.2
Q ss_pred CCcee-ecccCcc---cccCCCCcccceec--cCchhhhhhhhcCCceeccccccchhhhHHhHhhhheeeEEeecCCCC
Q 044266 328 TRRQM-VGWAPQQ---KVLTHPSIACFLSH--CGWNSTMEGVSNGVPFLCWPYFADQFLNESYICDIWKVGLRFNKNKNG 401 (462)
Q Consensus 328 ~~v~~-~~~~pq~---~ll~~~~~~~~I~H--gG~~sv~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~g~~~~~~~~~ 401 (462)
+++.+ .+++|-. ++|..+++..|.|. =|.|++.-.|+.|+|+++- .+-..-+-+++ .|+-+-... .
T Consensus 245 ~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~----~~np~~~~l~~-~~ipVlf~~---d 316 (360)
T PF07429_consen 245 ENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLS----RDNPFWQDLKE-QGIPVLFYG---D 316 (360)
T ss_pred cceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEe----cCChHHHHHHh-CCCeEEecc---c
Confidence 57764 5899854 69999999777764 5899999999999999876 33333344555 377776653 6
Q ss_pred ccCHHHHHHHHHHHhc
Q 044266 402 IITREEIMKKVDQVLE 417 (462)
Q Consensus 402 ~~~~~~l~~~i~~ll~ 417 (462)
.++...|+++=+.+..
T Consensus 317 ~L~~~~v~ea~rql~~ 332 (360)
T PF07429_consen 317 ELDEALVREAQRQLAN 332 (360)
T ss_pred cCCHHHHHHHHHHHhh
Confidence 7999999999887765
No 231
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=72.28 E-value=20 Score=32.42 Aligned_cols=98 Identities=9% Similarity=-0.016 Sum_probs=51.4
Q ss_pred HHHHHHHHHhC---CCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHhccHHHHHH
Q 044266 21 LLEISQCLVKH---GVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIPDGMEPEGDRNDLGMLTKTMVRVMPEKLEEL 97 (462)
Q Consensus 21 ~l~La~~L~~r---Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 97 (462)
+.+|++.|.+. |++|+++.+...+....... .....+++..+.++. -.....+....... +..+
T Consensus 16 l~aL~~~l~~~~~~~~~V~VVAP~~eqSg~ghai----T~~~pl~~~~~~~~~--yav~GTPaDCV~la-------l~~~ 82 (261)
T PRK13931 16 LEVLEQIATELAGPDGEVWTVAPAFEQSGVGHCI----SYTHPMMIAELGPRR--FAAEGSPADCVLAA-------LYDV 82 (261)
T ss_pred HHHHHHHHHHhccCCCeEEEEeCCCCCCCCcccc----cCCCCeEEEEeCCCe--EEEcCchHHHHHHH-------HHHh
Confidence 55667777653 47999999987765443221 111245555554221 00111222222211 1122
Q ss_pred HHHHhhccCCCceEEEeCC----------Ccc---hHHHHHHHcCCceEEEcc
Q 044266 98 IENINRLENEKITCVVADG----------SMG---WVMEVAEKMKLRRAAFWP 137 (462)
Q Consensus 98 ~~~l~~~~~~~~Dlvi~D~----------~~~---~~~~~A~~lgiP~v~~~~ 137 (462)
+.. .+||+||+-. ++. .+..-|..+|||.+.++.
T Consensus 83 ~~~------~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 83 MKD------APPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred cCC------CCCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 221 5799999743 222 344557778999999875
No 232
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=72.03 E-value=48 Score=28.02 Aligned_cols=30 Identities=17% Similarity=0.053 Sum_probs=24.8
Q ss_pred CCceEEEeCCCcc---hHHHHHHHcCCceEEEc
Q 044266 107 EKITCVVADGSMG---WVMEVAEKMKLRRAAFW 136 (462)
Q Consensus 107 ~~~Dlvi~D~~~~---~~~~~A~~lgiP~v~~~ 136 (462)
.+||+|++-.... .+..+|.++|.|++.=.
T Consensus 90 ~~p~~Vl~g~t~~g~~la~rlA~~L~~~~vsdv 122 (181)
T cd01985 90 EKPDLILAGATSIGKQLAPRVAALLGVPQISDV 122 (181)
T ss_pred hCCCEEEECCcccccCHHHHHHHHhCCCcceeE
Confidence 6899999886555 67889999999999743
No 233
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=71.95 E-value=38 Score=29.71 Aligned_cols=28 Identities=18% Similarity=0.195 Sum_probs=24.3
Q ss_pred CCCccChHHHHHHHHHHHhCCCEEEEEe
Q 044266 12 YPAQGHVIPLLEISQCLVKHGVKVTFLN 39 (462)
Q Consensus 12 ~~~~GH~~p~l~La~~L~~rGh~Vt~~~ 39 (462)
.+..|-..-.+.|++.|.++|++|.++-
T Consensus 8 ~t~~GKT~vs~~L~~~l~~~g~~v~~~K 35 (222)
T PRK00090 8 DTDVGKTVVTAALAQALREAGYSVAGYK 35 (222)
T ss_pred CCCcCHHHHHHHHHHHHHHcCCceEEEe
Confidence 3455999999999999999999998876
No 234
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=71.88 E-value=8.1 Score=34.96 Aligned_cols=47 Identities=19% Similarity=0.285 Sum_probs=40.5
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh
Q 044266 4 RPHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNA 50 (462)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 50 (462)
...++|+..++.|-..=..++|.+|.++|+.|+|++.+.....+...
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~ 151 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAA 151 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHH
Confidence 44788888888888888899999999999999999999887777664
No 235
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=71.28 E-value=6.4 Score=37.89 Aligned_cols=107 Identities=11% Similarity=0.196 Sum_probs=63.3
Q ss_pred cCCceee-cccCcccccCCCCcccceeccCchhhhhhhhcCCceeccccccchhhhHHh----HhhhheeeEEeecCCCC
Q 044266 327 ATRRQMV-GWAPQQKVLTHPSIACFLSHCGWNSTMEGVSNGVPFLCWPYFADQFLNESY----ICDIWKVGLRFNKNKNG 401 (462)
Q Consensus 327 ~~~v~~~-~~~pq~~ll~~~~~~~~I~HgG~~sv~eal~~GvP~l~~P~~~DQ~~na~~----v~~~~g~g~~~~~~~~~ 401 (462)
.+++... +..+-.++|..+|+ +||=- ...+.|.++.++|++....-.|.....+- .++ ...|..+
T Consensus 251 ~~~i~~~~~~~~~~~ll~~aDi--LITDy-SSi~fD~~~l~KPiify~~D~~~Y~~~rg~~~~~~~-~~pg~~~------ 320 (369)
T PF04464_consen 251 NSNIIFVSDNEDIYDLLAAADI--LITDY-SSIIFDFLLLNKPIIFYQPDLEEYEKERGFYFDYEE-DLPGPIV------ 320 (369)
T ss_dssp TTTEEE-TT-S-HHHHHHT-SE--EEESS--THHHHHGGGT--EEEE-TTTTTTTTTSSBSS-TTT-SSSS-EE------
T ss_pred CCcEEECCCCCCHHHHHHhcCE--EEEec-hhHHHHHHHhCCCEEEEeccHHHHhhccCCCCchHh-hCCCcee------
Confidence 3556554 44456789988888 99977 45888999999999988766655532210 111 1233333
Q ss_pred ccCHHHHHHHHHHHhcCHH-HHHHHHHHHHHHHhHhhcCCCcHHHH
Q 044266 402 IITREEIMKKVDQVLEDEN-FKARALDLKETSLNSVREGGQSDKTF 446 (462)
Q Consensus 402 ~~~~~~l~~~i~~ll~~~~-~~~~a~~l~~~~~~~~~~~g~~~~~~ 446 (462)
.+.++|.++|..+++++. ++++-++..+++-.. .+|.+.+.+
T Consensus 321 -~~~~eL~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~Dg~s~eri 363 (369)
T PF04464_consen 321 -YNFEELIEAIENIIENPDEYKEKREKFRDKFFKY--NDGNSSERI 363 (369)
T ss_dssp -SSHHHHHHHHTTHHHHHHHTHHHHHHHHHHHSTT----S-HHHHH
T ss_pred -CCHHHHHHHHHhhhhCCHHHHHHHHHHHHHhCCC--CCchHHHHH
Confidence 588999999999998764 566777777777653 344443333
No 236
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=71.27 E-value=61 Score=27.22 Aligned_cols=96 Identities=14% Similarity=0.152 Sum_probs=59.1
Q ss_pred HHHHHHHHHhCCCEEEEEeCCcch-HHHHHhhcCCCCCCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHhccHHHHHHHH
Q 044266 21 LLEISQCLVKHGVKVTFLNTDYNH-KRVVNALGQNNYIGDQIKLVSIPDGMEPEGDRNDLGMLTKTMVRVMPEKLEELIE 99 (462)
Q Consensus 21 ~l~La~~L~~rGh~Vt~~~~~~~~-~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 99 (462)
+..|.+...++|..|.+++...-. +.+.+... ...|++.+....++.. .....+++++
T Consensus 37 ~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~---~~yP~l~ivg~~~g~f------------------~~~~~~~i~~ 95 (172)
T PF03808_consen 37 FPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLR---RRYPGLRIVGYHHGYF------------------DEEEEEAIIN 95 (172)
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHH---HHCCCeEEEEecCCCC------------------ChhhHHHHHH
Confidence 445556666789999999987632 22222111 1225788776544322 2233456666
Q ss_pred HHhhccCCCceEEEeCCCcc----hHHHHHHHcCCceEEEccchhH
Q 044266 100 NINRLENEKITCVVADGSMG----WVMEVAEKMKLRRAAFWPAAAG 141 (462)
Q Consensus 100 ~l~~~~~~~~Dlvi~D~~~~----~~~~~A~~lgiP~v~~~~~~~~ 141 (462)
.++. .+||+|++-...+ |.....+.++.+ +.++...+.
T Consensus 96 ~I~~---~~pdiv~vglG~PkQE~~~~~~~~~l~~~-v~i~vG~~~ 137 (172)
T PF03808_consen 96 RINA---SGPDIVFVGLGAPKQERWIARHRQRLPAG-VIIGVGGAF 137 (172)
T ss_pred HHHH---cCCCEEEEECCCCHHHHHHHHHHHHCCCC-EEEEECchh
Confidence 6666 8999999998887 666777777887 444444443
No 237
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=71.27 E-value=5.2 Score=33.89 Aligned_cols=70 Identities=14% Similarity=0.174 Sum_probs=40.1
Q ss_pred CCCcccceeccCchhhhhhhhcCCceecccccc-----------------------chhhhHHhHhhhheeeEEeecCCC
Q 044266 344 HPSIACFLSHCGWNSTMEGVSNGVPFLCWPYFA-----------------------DQFLNESYICDIWKVGLRFNKNKN 400 (462)
Q Consensus 344 ~~~~~~~I~HgG~~sv~eal~~GvP~l~~P~~~-----------------------DQ~~na~~v~~~~g~g~~~~~~~~ 400 (462)
+..++.+|++||....+.... ++|+|-+|... ....+...+++-+|+-+...
T Consensus 32 ~~g~dViIsRG~ta~~lr~~~-~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~~~i~~~---- 106 (176)
T PF06506_consen 32 SEGADVIISRGGTAELLRKHV-SIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELLGVDIKIY---- 106 (176)
T ss_dssp TTT-SEEEEEHHHHHHHHCC--SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT-EEEEE----
T ss_pred hcCCeEEEECCHHHHHHHHhC-CCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHhCCceEEE----
Confidence 345555999999999999988 99999999732 22333444544444433332
Q ss_pred CccCHHHHHHHHHHHhcC
Q 044266 401 GIITREEIMKKVDQVLED 418 (462)
Q Consensus 401 ~~~~~~~l~~~i~~ll~~ 418 (462)
.--+.+++...|.++..+
T Consensus 107 ~~~~~~e~~~~i~~~~~~ 124 (176)
T PF06506_consen 107 PYDSEEEIEAAIKQAKAE 124 (176)
T ss_dssp EESSHHHHHHHHHHHHHT
T ss_pred EECCHHHHHHHHHHHHHc
Confidence 223567777777776544
No 238
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=71.02 E-value=29 Score=28.38 Aligned_cols=139 Identities=14% Similarity=0.132 Sum_probs=71.9
Q ss_pred EEEEeccCccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCcccccCchhHHHHhcCCceeecccCcccccCCCCcccce
Q 044266 272 VIYVAFGSFTVFDKEQFQELASGLELTNRPFLWVVRPDITNDAIDAYPEGFQDRVATRRQMVGWAPQQKVLTHPSIACFL 351 (462)
Q Consensus 272 ~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~ll~~~~~~~~I 351 (462)
.|-|-.||.+ +....+++...|++.+..+-+.+.+. .-.|+.+. .++. -+.+-.++.||
T Consensus 2 ~V~Ii~gs~S--D~~~~~~a~~~L~~~gi~~~~~V~sa------HR~p~~l~----------~~~~---~~~~~~~~viI 60 (150)
T PF00731_consen 2 KVAIIMGSTS--DLPIAEEAAKTLEEFGIPYEVRVASA------HRTPERLL----------EFVK---EYEARGADVII 60 (150)
T ss_dssp EEEEEESSGG--GHHHHHHHHHHHHHTT-EEEEEE--T------TTSHHHHH----------HHHH---HTTTTTESEEE
T ss_pred eEEEEeCCHH--HHHHHHHHHHHHHHcCCCEEEEEEec------cCCHHHHH----------HHHH---HhccCCCEEEE
Confidence 5566677644 67778888888888886655444322 11233221 1111 11111223388
Q ss_pred eccCch----hhhhhhhcCCceeccccccchhhh----HHhHhhhheeeEEeecCCCCccCHHHHHHHHHHHhcCHHHHH
Q 044266 352 SHCGWN----STMEGVSNGVPFLCWPYFADQFLN----ESYICDIWKVGLRFNKNKNGIITREEIMKKVDQVLEDENFKA 423 (462)
Q Consensus 352 ~HgG~~----sv~eal~~GvP~l~~P~~~DQ~~n----a~~v~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~ 423 (462)
.=.|.. ++..++. -.|+|.+|...++... ...+.-=-|+++-.-.- ++..++..++..|-.+ .|+++++
T Consensus 61 a~AG~~a~Lpgvva~~t-~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i-~~~~nAA~~A~~ILa~-~d~~l~~ 137 (150)
T PF00731_consen 61 AVAGMSAALPGVVASLT-TLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGI-NNGFNAALLAARILAL-KDPELRE 137 (150)
T ss_dssp EEEESS--HHHHHHHHS-SS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SS-THHHHHHHHHHHHHHT-T-HHHHH
T ss_pred EECCCcccchhhheecc-CCCEEEeecCcccccCcccHHHHHhccCCCCceEEEc-cCchHHHHHHHHHHhc-CCHHHHH
Confidence 877754 4444444 7899999987664421 11222101444332110 1345666666666554 4889999
Q ss_pred HHHHHHHHHHh
Q 044266 424 RALDLKETSLN 434 (462)
Q Consensus 424 ~a~~l~~~~~~ 434 (462)
+.+..+++.++
T Consensus 138 kl~~~~~~~~~ 148 (150)
T PF00731_consen 138 KLRAYREKMKE 148 (150)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 99999888875
No 239
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=71.00 E-value=13 Score=36.74 Aligned_cols=36 Identities=8% Similarity=0.035 Sum_probs=26.8
Q ss_pred HHHHHHHhhccCCCceEEEeCCCcchHHHHHHHcCCceEEEc
Q 044266 95 EELIENINRLENEKITCVVADGSMGWVMEVAEKMKLRRAAFW 136 (462)
Q Consensus 95 ~~l~~~l~~~~~~~~Dlvi~D~~~~~~~~~A~~lgiP~v~~~ 136 (462)
.++.+.+++ .+||++|.+. ....+|+++|+|++.+.
T Consensus 361 ~el~~~i~~---~~pdliig~~---~~~~~a~~~~ip~i~~~ 396 (428)
T cd01965 361 WDLESLAKE---EPVDLLIGNS---HGRYLARDLGIPLVRVG 396 (428)
T ss_pred HHHHHHhhc---cCCCEEEECc---hhHHHHHhcCCCEEEec
Confidence 344444444 8999999995 34688999999998754
No 240
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=70.96 E-value=6.4 Score=33.50 Aligned_cols=43 Identities=21% Similarity=0.179 Sum_probs=34.4
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHH
Q 044266 5 PHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVV 48 (462)
Q Consensus 5 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~ 48 (462)
.||++.-.|+.|=+. ...+.+.|.++|++|.++.++.-.+.+.
T Consensus 2 k~Ill~vtGsiaa~~-~~~li~~L~~~g~~V~vv~T~~A~~fi~ 44 (182)
T PRK07313 2 KNILLAVSGSIAAYK-AADLTSQLTKRGYQVTVLMTKAATKFIT 44 (182)
T ss_pred CEEEEEEeChHHHHH-HHHHHHHHHHCCCEEEEEEChhHHHHcC
Confidence 478877767666555 7999999999999999999987666554
No 241
>CHL00067 rps2 ribosomal protein S2
Probab=70.43 E-value=11 Score=33.58 Aligned_cols=35 Identities=9% Similarity=0.082 Sum_probs=26.2
Q ss_pred CCceEEEe-CCCcc-hHHHHHHHcCCceEEEccchhH
Q 044266 107 EKITCVVA-DGSMG-WVMEVAEKMKLRRAAFWPAAAG 141 (462)
Q Consensus 107 ~~~Dlvi~-D~~~~-~~~~~A~~lgiP~v~~~~~~~~ 141 (462)
..||+||+ |+..- .+..-|.++|||++.++-+...
T Consensus 160 ~~P~~iiv~d~~~~~~ai~Ea~~l~IPvIaivDTn~~ 196 (230)
T CHL00067 160 KLPDIVIIIDQQEEYTALRECRKLGIPTISILDTNCD 196 (230)
T ss_pred cCCCEEEEeCCcccHHHHHHHHHcCCCEEEEEeCCCC
Confidence 57888775 54433 6788899999999998766543
No 242
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=70.11 E-value=4.9 Score=34.30 Aligned_cols=39 Identities=18% Similarity=0.256 Sum_probs=27.8
Q ss_pred CCEEEEEcCCCccChHH------------HHHHHHHHHhCCCEEEEEeCCc
Q 044266 4 RPHVLAFPYPAQGHVIP------------LLEISQCLVKHGVKVTFLNTDY 42 (462)
Q Consensus 4 ~~~Il~~~~~~~GH~~p------------~l~La~~L~~rGh~Vt~~~~~~ 42 (462)
..|||+...|++-++.| -..||+++..+|++|+++..+.
T Consensus 3 gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 3 GKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp T-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TT
T ss_pred CCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCc
Confidence 45777777776665554 4789999999999999999984
No 243
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=69.81 E-value=55 Score=30.40 Aligned_cols=79 Identities=13% Similarity=0.124 Sum_probs=56.4
Q ss_pred CCcee-ecccCc---ccccCCCCcccceec--cCchhhhhhhhcCCceeccccccchhhhHHhHhhhheeeEEeecCCCC
Q 044266 328 TRRQM-VGWAPQ---QKVLTHPSIACFLSH--CGWNSTMEGVSNGVPFLCWPYFADQFLNESYICDIWKVGLRFNKNKNG 401 (462)
Q Consensus 328 ~~v~~-~~~~pq---~~ll~~~~~~~~I~H--gG~~sv~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~g~~~~~~~~~ 401 (462)
+++.+ +.++|. .++|+.+|++.|+|+ =|.||+.-.++.|+|+++-- +-+.|.. +.+ .|+-+-.+. .
T Consensus 206 ~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r---~n~fwqd-l~e-~gv~Vlf~~---d 277 (322)
T PRK02797 206 ENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSR---DNPFWQD-LTE-QGLPVLFTG---D 277 (322)
T ss_pred ccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEec---CCchHHH-HHh-CCCeEEecC---C
Confidence 67764 488885 469999999888876 48999999999999998763 2223333 333 477776664 5
Q ss_pred ccCHHHHHHHHHH
Q 044266 402 IITREEIMKKVDQ 414 (462)
Q Consensus 402 ~~~~~~l~~~i~~ 414 (462)
.++...+.++=+.
T Consensus 278 ~L~~~~v~e~~rq 290 (322)
T PRK02797 278 DLDEDIVREAQRQ 290 (322)
T ss_pred cccHHHHHHHHHH
Confidence 6777777766443
No 244
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=69.74 E-value=82 Score=28.66 Aligned_cols=47 Identities=19% Similarity=0.288 Sum_probs=36.7
Q ss_pred cHHHHHHHHHHhhccCCCceEEEeCCCcc--hHHHHHHHcCCceEEEccchh
Q 044266 91 PEKLEELIENINRLENEKITCVVADGSMG--WVMEVAEKMKLRRAAFWPAAA 140 (462)
Q Consensus 91 ~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~--~~~~~A~~lgiP~v~~~~~~~ 140 (462)
...+.++++.+++ .+..+|+++.... .+-.+|+..|++.+.+.+...
T Consensus 203 ~~~l~~l~~~ik~---~~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~~~~ 251 (266)
T cd01018 203 PADLKRLIDLAKE---KGVRVVFVQPQFSTKSAEAIAREIGAKVVTIDPLAA 251 (266)
T ss_pred HHHHHHHHHHHHH---cCCCEEEEcCCCCcHHHHHHHHHcCCeEEEeCCcHH
Confidence 3456667777776 8999999998766 566889999999998876653
No 245
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=69.06 E-value=51 Score=30.15 Aligned_cols=38 Identities=18% Similarity=0.199 Sum_probs=32.3
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcc
Q 044266 6 HVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYN 43 (462)
Q Consensus 6 ~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 43 (462)
.|+|+..++-|-..-...||..|++.|+.|.++..+.+
T Consensus 74 vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 74 VILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 34566666779999999999999999999999998765
No 246
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=68.95 E-value=48 Score=32.95 Aligned_cols=105 Identities=14% Similarity=0.134 Sum_probs=60.8
Q ss_pred CEEEEEcC-CCccChHHHHHHHHHHHhCCCEEEEEeCCcc-hH--HHHHhhcCCCCCCCCeEEEEcCCCCCCCCCCCCHH
Q 044266 5 PHVLAFPY-PAQGHVIPLLEISQCLVKHGVKVTFLNTDYN-HK--RVVNALGQNNYIGDQIKLVSIPDGMEPEGDRNDLG 80 (462)
Q Consensus 5 ~~Il~~~~-~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~-~~--~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~ 80 (462)
.+|++... .+.|-..-...|++.|+++|++|..+-+... .+ ...... +.....+ +..
T Consensus 4 ~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~Gpd~~d~~~~~~~~--------g~~~~~l-----------d~~ 64 (451)
T PRK01077 4 PALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKVGPDYIDPAYHTAAT--------GRPSRNL-----------DSW 64 (451)
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeecCCCcccHHHHHHHh--------CCCcccC-----------Cce
Confidence 35555543 3458888899999999999999988866421 11 111110 1110000 000
Q ss_pred HHHHHHHHhccHHHHHHHHHHhhccCCCceEEEeCCC------------cchHHHHHHHcCCceEEEccch
Q 044266 81 MLTKTMVRVMPEKLEELIENINRLENEKITCVVADGS------------MGWVMEVAEKMKLRRAAFWPAA 139 (462)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~------------~~~~~~~A~~lgiP~v~~~~~~ 139 (462)
......+.+.++.+. .+.|++|++.. ......+|+.++.|++.+....
T Consensus 65 -------~~~~~~v~~~~~~~~----~~~D~vlVEGagGl~~g~~~~~~~~s~adiA~~l~~pviLV~~~~ 124 (451)
T PRK01077 65 -------MMGEELVRALFARAA----QGADIAVIEGVMGLFDGAGSDPDEGSTADIAKLLGAPVVLVVDAS 124 (451)
T ss_pred -------eCCHHHHHHHHHHhc----ccCCEEEEECCCccccCCccCCCCCCHHHHHHHhCCCEEEEECCc
Confidence 001223444444432 57899997543 1247789999999999997654
No 247
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=68.90 E-value=67 Score=26.77 Aligned_cols=31 Identities=19% Similarity=0.097 Sum_probs=25.3
Q ss_pred CCceEEEeCCCcc---hHHHHHHHcCCceEEEcc
Q 044266 107 EKITCVVADGSMG---WVMEVAEKMKLRRAAFWP 137 (462)
Q Consensus 107 ~~~Dlvi~D~~~~---~~~~~A~~lgiP~v~~~~ 137 (462)
.+||+|+.-.... .+..+|.++|.|++.-..
T Consensus 82 ~~p~~Vl~~~t~~g~~la~rlAa~L~~~~vtdv~ 115 (168)
T cd01715 82 EKPSHILAGATSFGKDLAPRVAAKLDVGLISDVT 115 (168)
T ss_pred cCCCEEEECCCccccchHHHHHHHhCCCceeeEE
Confidence 7899999876554 678899999999998543
No 248
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=68.89 E-value=9.7 Score=32.85 Aligned_cols=117 Identities=12% Similarity=0.106 Sum_probs=61.0
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcCCCCCCCC-----CCCCH
Q 044266 5 PHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIPDGMEPEG-----DRNDL 79 (462)
Q Consensus 5 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~-----~~~~~ 79 (462)
||||+.---+. +---+..|+++|.+.||+|+++.+...+....... .....++......+..... ....+
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~~~~Sg~g~si----t~~~pl~~~~~~~~~~~~~~~~~~v~GTP 75 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSALGHDVVVVAPDSEQSGTGHSI----TLHKPLRVTEVEPGHDPGGVEAYAVSGTP 75 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTTTSSEEEEEEESSSTTTSTTS------SSSEEEEEEEE-TTCCSTTEEEEESS-H
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhcCCeEEEEeCCCCCcCcceee----cCCCCeEEEEEEecccCCCCCEEEEcCcH
Confidence 47777654444 44457889999987889999999988765542221 1112344433321111110 11223
Q ss_pred HHHHHHHHHhccHHHHHHHHHHhhccCCCceEEEeCC----------Ccc---hHHHHHHHcCCceEEEccch
Q 044266 80 GMLTKTMVRVMPEKLEELIENINRLENEKITCVVADG----------SMG---WVMEVAEKMKLRRAAFWPAA 139 (462)
Q Consensus 80 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~----------~~~---~~~~~A~~lgiP~v~~~~~~ 139 (462)
.......+. .++.. .+||+||+-. ++. .+..-|...|||.+.++...
T Consensus 76 aDcv~~al~-------~~~~~------~~pDLViSGiN~G~N~g~~v~~SGTVgAA~ea~~~GipaIA~S~~~ 135 (196)
T PF01975_consen 76 ADCVKLALD-------GLLPD------KKPDLVISGINHGANLGTDVLYSGTVGAAMEAALRGIPAIAVSLDS 135 (196)
T ss_dssp HHHHHHHHH-------CTSTT------SS-SEEEEEEEES---GGGGGG-HHHHHHHHHHHTTSEEEEEEEES
T ss_pred HHHHHHHHH-------hhhcc------CCCCEEEECCCCCccCCcCcccccHHHHHHHHHHcCCCeEEEeccc
Confidence 322222221 11111 4699999753 222 24455677899999987644
No 249
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=68.65 E-value=47 Score=28.36 Aligned_cols=55 Identities=24% Similarity=0.278 Sum_probs=34.5
Q ss_pred EEEEEcC---CC-ccChHH-HHHHHHHHHhCCCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcC
Q 044266 6 HVLAFPY---PA-QGHVIP-LLEISQCLVKHGVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIP 67 (462)
Q Consensus 6 ~Il~~~~---~~-~GH~~p-~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~ 67 (462)
||.++.. |+ +|=+-- .-.|+..|+++||+||+.+.....+.-.... .|++...+|
T Consensus 3 kIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~~~y-------~gv~l~~i~ 62 (185)
T PF09314_consen 3 KIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYKEFEY-------NGVRLVYIP 62 (185)
T ss_pred eEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCCCccc-------CCeEEEEeC
Confidence 6666542 22 444443 4567888888999999999876543222211 377777776
No 250
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=68.41 E-value=57 Score=30.59 Aligned_cols=45 Identities=13% Similarity=0.178 Sum_probs=39.2
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH
Q 044266 5 PHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVN 49 (462)
Q Consensus 5 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~ 49 (462)
.-|+|+..-+.|-....-.||..|.+.|+.|.++..+-|+....+
T Consensus 140 ~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiE 184 (340)
T COG0552 140 FVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIE 184 (340)
T ss_pred EEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHH
Confidence 346789999999999999999999999999999999988754433
No 251
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=68.40 E-value=10 Score=32.30 Aligned_cols=45 Identities=11% Similarity=0.113 Sum_probs=36.0
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHh-CCCEEEEEeCCcchHHHHHh
Q 044266 5 PHVLAFPYPAQGHVIPLLEISQCLVK-HGVKVTFLNTDYNHKRVVNA 50 (462)
Q Consensus 5 ~~Il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~~~~~v~~~ 50 (462)
.||++.-.|+.| .+=...|++.|.+ .||+|.++.++.-.+.+...
T Consensus 2 k~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~A~~fv~~~ 47 (185)
T PRK06029 2 KRLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQAARQTLAHE 47 (185)
T ss_pred CEEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHHHHHHHHHH
Confidence 478877767666 6668999999998 59999999998877776653
No 252
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.15 E-value=47 Score=31.80 Aligned_cols=43 Identities=14% Similarity=0.182 Sum_probs=37.3
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHH
Q 044266 4 RPHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKR 46 (462)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~ 46 (462)
..-|+|+..-+.|-...+-.||..+.++|+.|.+++.+-|+..
T Consensus 101 psVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRag 143 (483)
T KOG0780|consen 101 PSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAG 143 (483)
T ss_pred CcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccc
Confidence 3457788888999999999999999999999999998877543
No 253
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=67.96 E-value=42 Score=32.98 Aligned_cols=41 Identities=20% Similarity=0.243 Sum_probs=34.5
Q ss_pred EEEEEcCCCccChHHHHHHHHHHH-hCCCEEEEEeCCcchHH
Q 044266 6 HVLAFPYPAQGHVIPLLEISQCLV-KHGVKVTFLNTDYNHKR 46 (462)
Q Consensus 6 ~Il~~~~~~~GH~~p~l~La~~L~-~rGh~Vt~~~~~~~~~~ 46 (462)
-|+++..++.|-..-...||..|. ++|+.|.+++.+.++..
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~ 142 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPA 142 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchH
Confidence 456777778899999999999997 58999999999877654
No 254
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=67.84 E-value=23 Score=34.39 Aligned_cols=46 Identities=17% Similarity=0.256 Sum_probs=39.6
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH
Q 044266 4 RPHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVN 49 (462)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~ 49 (462)
+..|+++..=+.|-...+-.||+.|.++|+.|.+++.+-++....+
T Consensus 100 P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~e 145 (451)
T COG0541 100 PTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIE 145 (451)
T ss_pred CeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHH
Confidence 4567888888999999999999999999999999999887665433
No 255
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=67.78 E-value=74 Score=30.80 Aligned_cols=96 Identities=11% Similarity=0.077 Sum_probs=56.9
Q ss_pred CCCcEEEEeccCccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCcccccCchhHHHHhcCCce-eecccCcc--cccCC
Q 044266 268 QQNSVIYVAFGSFTVFDKEQFQELASGLELTNRPFLWVVRPDITNDAIDAYPEGFQDRVATRRQ-MVGWAPQQ--KVLTH 344 (462)
Q Consensus 268 ~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~pq~--~ll~~ 344 (462)
.+||.|-+|. ....-.....+.+.|++.|+.+++--..+.. + .--+.+. ..+.+- +.+...+. +.|
T Consensus 183 ~~kp~I~iTm---fGvTTp~V~~~~~~Le~~G~Ev~VFHAtG~G-G---~aME~Li--~~G~~~~VlDlTttEl~d~l-- 251 (403)
T PF06792_consen 183 EDKPLIGITM---FGVTTPCVDAIRERLEEEGYEVLVFHATGTG-G---RAMERLI--REGQFDGVLDLTTTELADEL-- 251 (403)
T ss_pred CCCcEEEEEC---CCCcHHHHHHHHHHHHhcCCeEEEEcCCCCc-h---HHHHHHH--HcCCcEEEEECcHHHHHHHH--
Confidence 3466777754 2234467788888888889998876544411 0 0011111 012222 33444443 222
Q ss_pred CCcccceeccCchhhhhhhhcCCceeccccccc
Q 044266 345 PSIACFLSHCGWNSTMEGVSNGVPFLCWPYFAD 377 (462)
Q Consensus 345 ~~~~~~I~HgG~~sv~eal~~GvP~l~~P~~~D 377 (462)
++ =|..+|-+-+-.|...|+|+|+.|=..|
T Consensus 252 --~G-Gv~sagp~Rl~AA~~~GIP~Vvs~GalD 281 (403)
T PF06792_consen 252 --FG-GVLSAGPDRLEAAARAGIPQVVSPGALD 281 (403)
T ss_pred --hC-CCCCCCchHHHHHHHcCCCEEEecCccc
Confidence 22 2667888899999999999999996554
No 256
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=67.36 E-value=90 Score=27.66 Aligned_cols=44 Identities=14% Similarity=0.198 Sum_probs=35.7
Q ss_pred EEEEEcC-CCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH
Q 044266 6 HVLAFPY-PAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVN 49 (462)
Q Consensus 6 ~Il~~~~-~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~ 49 (462)
-|.|+.. |+-|-...++.||.+|+++|-.|+++=.++++....-
T Consensus 3 vItf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~W 47 (231)
T PF07015_consen 3 VITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQPLAKW 47 (231)
T ss_pred eEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHHH
Confidence 3445443 5669999999999999999999999999988766544
No 257
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=67.15 E-value=72 Score=28.97 Aligned_cols=57 Identities=12% Similarity=0.174 Sum_probs=37.1
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcCCCCC
Q 044266 4 RPHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIPDGME 71 (462)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~ 71 (462)
++||+++.+++...-. ++++.|.++|.+|.++......+..... ..+....+|-+..
T Consensus 3 ~~kvaVl~~pG~n~d~---e~~~Al~~aG~~v~~v~~~~~~~~~~~l--------~~~DgLvipGGfs 59 (261)
T PRK01175 3 SIRVAVLRMEGTNCED---ETVKAFRRLGVEPEYVHINDLAAERKSV--------SDYDCLVIPGGFS 59 (261)
T ss_pred CCEEEEEeCCCCCCHH---HHHHHHHHCCCcEEEEeeccccccccch--------hhCCEEEECCCCC
Confidence 5699988887775443 5678898999999998764321111111 2567777777653
No 258
>PRK11519 tyrosine kinase; Provisional
Probab=67.08 E-value=1.4e+02 Score=31.78 Aligned_cols=117 Identities=15% Similarity=0.151 Sum_probs=67.8
Q ss_pred CCEEEEEcC--CCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhc-CC-------------------CCCCCCe
Q 044266 4 RPHVLAFPY--PAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNALG-QN-------------------NYIGDQI 61 (462)
Q Consensus 4 ~~~Il~~~~--~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~-~~-------------------~~~~~~i 61 (462)
+.|+++++. |+-|--.-...||..|+..|++|.++-.+.....+..... .. ....+++
T Consensus 525 ~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr~~~~~~~~~~~~~~gl~~~l~~~~~l~~~i~~~~~~~l 604 (719)
T PRK11519 525 QNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSDILIGQGDITTAAKPTSIANF 604 (719)
T ss_pred CceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCCcHHHHhCCCCCCCHHHHhCCCCCHHHhecccCcCCE
Confidence 457776665 4668888899999999999999999966543222211110 00 0011233
Q ss_pred EEEEcCCCCCCCCCCCCHHHHHHHHHHhccHHHHHHHHHHhhccCCCceEEEeCCCcc----hHHHHHHHcCCceEEEc
Q 044266 62 KLVSIPDGMEPEGDRNDLGMLTKTMVRVMPEKLEELIENINRLENEKITCVVADGSMG----WVMEVAEKMKLRRAAFW 136 (462)
Q Consensus 62 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~----~~~~~A~~lgiP~v~~~ 136 (462)
.+.+.. ....++.+++ ....+.++++.++ .++|+||.|.--. -+..+++..+..++++.
T Consensus 605 ~~lp~g------~~~~~~~ell------~s~~~~~ll~~l~----~~yD~ViiDtpP~~~v~Da~~l~~~~d~~l~Vvr 667 (719)
T PRK11519 605 DLIPRG------QVPPNPSELL------MSERFAELVNWAS----KNYDLVLIDTPPILAVTDAAIVGRHVGTTLMVAR 667 (719)
T ss_pred EEEeCC------CCCCCHHHHh------hHHHHHHHHHHHH----hcCCEEEEeCCCcccchHHHHHHHHCCeEEEEEe
Confidence 333211 1122333322 1345677777765 5899999995332 24566777776666543
No 259
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=67.03 E-value=23 Score=29.79 Aligned_cols=99 Identities=16% Similarity=0.134 Sum_probs=49.8
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcc------hHHHHHhhcCCCCCCCCeEEEEcCCCCCCCCCCC
Q 044266 4 RPHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYN------HKRVVNALGQNNYIGDQIKLVSIPDGMEPEGDRN 77 (462)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~------~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~ 77 (462)
+..|.+++..+.|-....+.+|-+-+-+|.+|.++-.=.. ...+... +++.+.....++.....
T Consensus 3 ~G~i~vytG~GKGKTTAAlGlalRA~G~G~rV~ivQFlKg~~~~GE~~~l~~l--------~~~~~~~~g~~f~~~~~-- 72 (172)
T PF02572_consen 3 RGLIQVYTGDGKGKTTAALGLALRAAGHGMRVLIVQFLKGGRYSGELKALKKL--------PNVEIERFGKGFVWRMN-- 72 (172)
T ss_dssp ---EEEEESSSS-HHHHHHHHHHHHHCTT--EEEEESS--SS--HHHHHHGGG--------T--EEEE--TT----GG--
T ss_pred CcEEEEEeCCCCCchHHHHHHHHHHHhCCCEEEEEEEecCCCCcCHHHHHHhC--------CeEEEEEcCCcccccCC--
Confidence 4567889999999999888888777778888888763221 1122222 36787776664443311
Q ss_pred CHHHHHHHHHHhccHHHHHHHHHHhhccCCCceEEEeCCCcc
Q 044266 78 DLGMLTKTMVRVMPEKLEELIENINRLENEKITCVVADGSMG 119 (462)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~ 119 (462)
....- ...+...++...+.+.. .++|+||.|-...
T Consensus 73 ~~~~~----~~~~~~~~~~a~~~i~~---~~~dlvILDEi~~ 107 (172)
T PF02572_consen 73 EEEED----RAAAREGLEEAKEAISS---GEYDLVILDEINY 107 (172)
T ss_dssp GHHHH----HHHHHHHHHHHHHHTT----TT-SEEEEETHHH
T ss_pred CcHHH----HHHHHHHHHHHHHHHhC---CCCCEEEEcchHH
Confidence 11111 22333444444455444 8999999995433
No 260
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=67.00 E-value=67 Score=26.04 Aligned_cols=99 Identities=11% Similarity=0.065 Sum_probs=63.6
Q ss_pred CCCCEEEEEcCCCccChHHHHHHHHHHHhC--CCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcCCCCCCCCCCCCH
Q 044266 2 LRRPHVLAFPYPAQGHVIPLLEISQCLVKH--GVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIPDGMEPEGDRNDL 79 (462)
Q Consensus 2 ~~~~~Il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~ 79 (462)
..+++|++.. .-++-.-++.+++.|.+. ||.+ +.+....+.+++.. |+.+..+-.+ +.
T Consensus 2 ~~~~~v~lsv--~d~dK~~l~~~a~~l~~ll~Gf~l--~AT~gTa~~L~~~~--------Gi~v~~vi~~-~~------- 61 (142)
T PRK05234 2 PARKRIALIA--HDHKKDDLVAWVKAHKDLLEQHEL--YATGTTGGLIQEAT--------GLDVTRLLSG-PL------- 61 (142)
T ss_pred CcCcEEEEEE--eccchHHHHHHHHHHHHHhcCCEE--EEeChHHHHHHhcc--------CCeeEEEEcC-CC-------
Confidence 3456777654 556778899999999999 9995 45667777777651 6666554111 00
Q ss_pred HHHHHHHHHhccHHHHHHHHHHhhccCCCceEEEeCC--Ccc--------hHHHHHHHcCCceEEE
Q 044266 80 GMLTKTMVRVMPEKLEELIENINRLENEKITCVVADG--SMG--------WVMEVAEKMKLRRAAF 135 (462)
Q Consensus 80 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~--~~~--------~~~~~A~~lgiP~v~~ 135 (462)
.-.+.+.+++.. .+.|+||.-+ ... .-...|-..|||+++-
T Consensus 62 ---------gg~~~i~~~I~~------g~i~lVInt~dp~~~~~~~~D~~~IRR~Av~~~IP~~T~ 112 (142)
T PRK05234 62 ---------GGDQQIGALIAE------GKIDMLIFFRDPLTAQPHDPDVKALLRLADVWNIPVATN 112 (142)
T ss_pred ---------CCchhHHHHHHc------CceeEEEEecCCCCCCcccchHHHHHHHHHHcCCCEEcC
Confidence 012334455555 8999999843 322 2335588889999973
No 261
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=66.58 E-value=82 Score=34.40 Aligned_cols=98 Identities=16% Similarity=0.070 Sum_probs=58.5
Q ss_pred cccCCCCccccee---ccCchhh-hhhhhcCC---ceeccccccchhhhHHhHhhhhe-eeEEeecCCCCccCHHHHHHH
Q 044266 340 KVLTHPSIACFLS---HCGWNST-MEGVSNGV---PFLCWPYFADQFLNESYICDIWK-VGLRFNKNKNGIITREEIMKK 411 (462)
Q Consensus 340 ~ll~~~~~~~~I~---HgG~~sv-~eal~~Gv---P~l~~P~~~DQ~~na~~v~~~~g-~g~~~~~~~~~~~~~~~l~~~ 411 (462)
+++..++| ++- .-|+|-+ .|.++++. -++++.-+. .-|. . +| -|+.++ ..+.++++++
T Consensus 455 AlY~~ADV--~lvTslrDGmNLva~Eyva~~~~~~GvLILSEfa---Gaa~---~-L~~~AllVN-----P~D~~~vA~A 520 (934)
T PLN03064 455 ALYAVTDV--ALVTSLRDGMNLVSYEFVACQDSKKGVLILSEFA---GAAQ---S-LGAGAILVN-----PWNITEVAAS 520 (934)
T ss_pred HHHHhCCE--EEeCccccccCchHHHHHHhhcCCCCCeEEeCCC---chHH---H-hCCceEEEC-----CCCHHHHHHH
Confidence 56777777 554 3488855 59999954 223333322 1222 2 43 467774 4899999999
Q ss_pred HHHHhc-CH-HHHHHHHHHHHHHHhHhhcCCCcHHHHHHHHHHHHhh
Q 044266 412 VDQVLE-DE-NFKARALDLKETSLNSVREGGQSDKTFKNFVQWIKAE 456 (462)
Q Consensus 412 i~~ll~-~~-~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 456 (462)
|.++|+ ++ +-+++.+.+.+.... -+...=.+.|++++...
T Consensus 521 I~~AL~M~~~Er~~r~~~~~~~V~~-----~d~~~Wa~~fl~~L~~~ 562 (934)
T PLN03064 521 IAQALNMPEEEREKRHRHNFMHVTT-----HTAQEWAETFVSELNDT 562 (934)
T ss_pred HHHHHhCCHHHHHHHHHHHHhhccc-----CCHHHHHHHHHHHHHHH
Confidence 999997 55 344444555555443 24444566677666544
No 262
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=65.87 E-value=18 Score=29.15 Aligned_cols=45 Identities=24% Similarity=0.239 Sum_probs=38.9
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHH
Q 044266 3 RRPHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRV 47 (462)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v 47 (462)
++.||++.+.+.-||-.-.--+++.|++.|.+|.........+.+
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~ 55 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEA 55 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHH
Confidence 578999999999999999999999999999999988866554433
No 263
>PHA02542 41 41 helicase; Provisional
Probab=65.77 E-value=36 Score=34.02 Aligned_cols=39 Identities=10% Similarity=0.246 Sum_probs=33.2
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchH
Q 044266 7 VLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHK 45 (462)
Q Consensus 7 Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 45 (462)
|++..-|+.|-..-.+.+|...++.|+.|.|++-.-..+
T Consensus 193 iiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM~~~ 231 (473)
T PHA02542 193 NVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEMAEE 231 (473)
T ss_pred EEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccCCHH
Confidence 556778899999999999999998999999998766544
No 264
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=65.47 E-value=9 Score=32.69 Aligned_cols=39 Identities=13% Similarity=0.042 Sum_probs=33.0
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcch
Q 044266 6 HVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNH 44 (462)
Q Consensus 6 ~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 44 (462)
||++--.|+.|=+...+.+.+.|.+.|++|+++.++.-.
T Consensus 2 ~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~A~ 40 (187)
T TIGR02852 2 RIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSETVQ 40 (187)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchhHH
Confidence 677777777787777789999999999999999987654
No 265
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=65.36 E-value=51 Score=32.50 Aligned_cols=27 Identities=19% Similarity=0.190 Sum_probs=23.1
Q ss_pred CCceEEEeCCCcchHHHHHHHcCCceEEEc
Q 044266 107 EKITCVVADGSMGWVMEVAEKMKLRRAAFW 136 (462)
Q Consensus 107 ~~~Dlvi~D~~~~~~~~~A~~lgiP~v~~~ 136 (462)
.+||++|.+.. ...+|+++|||++.+.
T Consensus 371 ~~~dliiG~s~---~~~~a~~~~ip~~~~~ 397 (429)
T cd03466 371 LKIDVLIGNSY---GRRIAEKLGIPLIRIG 397 (429)
T ss_pred cCCCEEEECch---hHHHHHHcCCCEEEec
Confidence 89999999954 5788999999998764
No 266
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=64.88 E-value=97 Score=29.88 Aligned_cols=41 Identities=24% Similarity=0.379 Sum_probs=32.9
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHH
Q 044266 7 VLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRV 47 (462)
Q Consensus 7 Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v 47 (462)
+++...|+.|--.=++.+|..+++.|..|.+++.....+.+
T Consensus 85 vLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi 125 (372)
T cd01121 85 ILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQI 125 (372)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHH
Confidence 45666677898999999999999999999999887655444
No 267
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=64.44 E-value=9.1 Score=35.28 Aligned_cols=55 Identities=16% Similarity=0.113 Sum_probs=37.8
Q ss_pred CCCCcccceeccCchhhhhhhh----cCCceeccccccchhhhHHhHhhhheeeEEeecCCCCccCHHHHHHHHHHHhcC
Q 044266 343 THPSIACFLSHCGWNSTMEGVS----NGVPFLCWPYFADQFLNESYICDIWKVGLRFNKNKNGIITREEIMKKVDQVLED 418 (462)
Q Consensus 343 ~~~~~~~~I~HgG~~sv~eal~----~GvP~l~~P~~~DQ~~na~~v~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ll~~ 418 (462)
..+++ +|+-||-||++.++. .++|++.+ |.- .+|.- ...+++++.+++++++++
T Consensus 63 ~~~Dl--vi~iGGDGT~L~aa~~~~~~~~PilGI--------N~G------~lGFL------t~~~~~~~~~~l~~i~~g 120 (287)
T PRK14077 63 KISDF--LISLGGDGTLISLCRKAAEYDKFVLGI--------HAG------HLGFL------TDITVDEAEKFFQAFFQG 120 (287)
T ss_pred cCCCE--EEEECCCHHHHHHHHHhcCCCCcEEEE--------eCC------CcccC------CcCCHHHHHHHHHHHHcC
Confidence 34455 999999999998865 37888777 211 12221 236788899999998865
Q ss_pred H
Q 044266 419 E 419 (462)
Q Consensus 419 ~ 419 (462)
+
T Consensus 121 ~ 121 (287)
T PRK14077 121 E 121 (287)
T ss_pred C
Confidence 4
No 268
>PRK00784 cobyric acid synthase; Provisional
Probab=64.39 E-value=67 Score=32.31 Aligned_cols=35 Identities=11% Similarity=0.224 Sum_probs=27.5
Q ss_pred EEEEEcC-CCccChHHHHHHHHHHHhCCCEEEEEeC
Q 044266 6 HVLAFPY-PAQGHVIPLLEISQCLVKHGVKVTFLNT 40 (462)
Q Consensus 6 ~Il~~~~-~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 40 (462)
.|++... ...|-..-...|++.|+++|++|..+=+
T Consensus 4 ~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~Kp 39 (488)
T PRK00784 4 ALMVQGTASDAGKSTLVAGLCRILARRGYRVAPFKA 39 (488)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecccc
Confidence 4555533 3459999999999999999999887654
No 269
>PRK05920 aromatic acid decarboxylase; Validated
Probab=64.14 E-value=12 Score=32.40 Aligned_cols=45 Identities=16% Similarity=0.208 Sum_probs=35.2
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH
Q 044266 4 RPHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVN 49 (462)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~ 49 (462)
+.||++.-.|+.+= +=...+.+.|.+.||+|+++.+..-...+..
T Consensus 3 ~krIllgITGsiaa-~ka~~lvr~L~~~g~~V~vi~T~~A~~fv~~ 47 (204)
T PRK05920 3 MKRIVLAITGASGA-IYGVRLLECLLAADYEVHLVISKAAQKVLAT 47 (204)
T ss_pred CCEEEEEEeCHHHH-HHHHHHHHHHHHCCCEEEEEEChhHHHHHHH
Confidence 45787665554444 6889999999999999999999887666654
No 270
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=64.04 E-value=87 Score=31.20 Aligned_cols=26 Identities=19% Similarity=0.090 Sum_probs=21.6
Q ss_pred CCceEEEeCCCcchHHHHHHHcCCceEEE
Q 044266 107 EKITCVVADGSMGWVMEVAEKMKLRRAAF 135 (462)
Q Consensus 107 ~~~Dlvi~D~~~~~~~~~A~~lgiP~v~~ 135 (462)
.+||++|.. .....+|+++|||++.+
T Consensus 394 ~~pDl~ig~---~~~~~~a~k~giP~i~~ 419 (456)
T TIGR01283 394 YKADLLIAG---GKERYTALKLGIPFCDI 419 (456)
T ss_pred cCCCEEEEc---cchHHHHHhcCCCEEEc
Confidence 899999986 44567788999999875
No 271
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=63.72 E-value=32 Score=34.20 Aligned_cols=87 Identities=20% Similarity=0.229 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcCC--CCCCCC----CCCCHHHHHHHHHHhcc
Q 044266 18 VIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIPD--GMEPEG----DRNDLGMLTKTMVRVMP 91 (462)
Q Consensus 18 ~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~--~~~~~~----~~~~~~~~~~~~~~~~~ 91 (462)
-.-+..+|+.|.+.|+++ +++....+.+++. |+.+..+.+ ++|+-- .+-.+.-.-..+.+.-.
T Consensus 10 K~~iv~lAk~L~~lGfeI--iATgGTak~L~e~---------GI~v~~Vsk~TgfPEil~GRVKTLHP~IhgGiLarr~~ 78 (511)
T TIGR00355 10 KTGIVEFAQGLVERGVEL--LSTGGTAKLLAEA---------GVPVTEVSDYTGFPEMMDGRVKTLHPKVHGGILARRGD 78 (511)
T ss_pred cccHHHHHHHHHHCCCEE--EEechHHHHHHHC---------CCeEEEeecccCCchhhCCccccCCchhhhhhhcCCCc
Confidence 455789999999999998 4777888999888 888777652 333321 11122212222222222
Q ss_pred HHHHHHHHHHhhccCCCceEEEeCCCcch
Q 044266 92 EKLEELIENINRLENEKITCVVADGSMGW 120 (462)
Q Consensus 92 ~~~~~l~~~l~~~~~~~~Dlvi~D~~~~~ 120 (462)
+. ++.+++..=...|+||++ ++++
T Consensus 79 ~~----~~~l~~~~I~~IDlVvvN-LYPF 102 (511)
T TIGR00355 79 DD----DADLEEHGIEPIDLVVVN-LYPF 102 (511)
T ss_pred hH----HHHHHHcCCCceeEEEEe-ccCh
Confidence 32 333333221678999999 5554
No 272
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=63.68 E-value=7.5 Score=33.75 Aligned_cols=113 Identities=14% Similarity=0.038 Sum_probs=62.1
Q ss_pred CccChHHHHHHHHHHHhCCCEEEEEeCCcchHH-HHHhhcCCCCCCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHH--hc
Q 044266 14 AQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKR-VVNALGQNNYIGDQIKLVSIPDGMEPEGDRNDLGMLTKTMVR--VM 90 (462)
Q Consensus 14 ~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~-v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~ 90 (462)
+..|+...+.++..++.+|=.+.|+++...... ++.... ...-+.+...+..+- ..+.......+.. .+
T Consensus 90 T~~~Lr~A~~fVa~vA~r~GiILFv~tn~~~~~~ve~aA~-------r~~gy~~~~~w~~G~-lTN~~~l~g~~~~~~~~ 161 (251)
T KOG0832|consen 90 TASYLRRALNFVAHVAHRGGIILFVGTNNGFKDLVERAAR-------RAGGYSHNRKWLGGL-LTNARELFGALVRKFLS 161 (251)
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCcchHHHHHHHHH-------HhcCceeeeeeccce-eecchhhcccccccccC
Confidence 447788889999999999999999999875443 433311 111111111111110 0111111111111 11
Q ss_pred cHHHHHHHHHHhhccCCCceEEEe-CCCcc-hHHHHHHHcCCceEEEccchh
Q 044266 91 PEKLEELIENINRLENEKITCVVA-DGSMG-WVMEVAEKMKLRRAAFWPAAA 140 (462)
Q Consensus 91 ~~~~~~l~~~l~~~~~~~~Dlvi~-D~~~~-~~~~~A~~lgiP~v~~~~~~~ 140 (462)
.+....++.. ..+||||+ |+... .++.-|.+++||.|.+.-+..
T Consensus 162 ~pd~~~f~~t------~~~D~vvvln~~e~~sAilEA~K~~IPTIgIVDtN~ 207 (251)
T KOG0832|consen 162 LPDALCFLPT------LTPDLVVVLNPEENHSAILEAAKMAIPTIGIVDTNC 207 (251)
T ss_pred CCcceeeccc------CCcceeEecCcccccHHHHHHHHhCCCeEEEecCCC
Confidence 2222222333 67798775 65555 777889999999999765544
No 273
>PRK07206 hypothetical protein; Provisional
Probab=63.09 E-value=32 Score=33.67 Aligned_cols=34 Identities=9% Similarity=0.033 Sum_probs=25.3
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcc
Q 044266 5 PHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYN 43 (462)
Q Consensus 5 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 43 (462)
.+|+++-.... -..+++++.++|++|.++.....
T Consensus 3 k~~liv~~~~~-----~~~~~~a~~~~G~~~v~v~~~~~ 36 (416)
T PRK07206 3 KKVVIVDPFSS-----GKFLAPAFKKRGIEPIAVTSSCL 36 (416)
T ss_pred CeEEEEcCCch-----HHHHHHHHHHcCCeEEEEEcCCC
Confidence 37888775433 34688999999999998887643
No 274
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=62.84 E-value=8.9 Score=35.45 Aligned_cols=54 Identities=15% Similarity=0.266 Sum_probs=37.5
Q ss_pred CCCcccceeccCchhhhhhhhc----CCceeccccccchhhhHHhHhhhheeeEEeecCCCCccCHHHHHHHHHHHhcCH
Q 044266 344 HPSIACFLSHCGWNSTMEGVSN----GVPFLCWPYFADQFLNESYICDIWKVGLRFNKNKNGIITREEIMKKVDQVLEDE 419 (462)
Q Consensus 344 ~~~~~~~I~HgG~~sv~eal~~----GvP~l~~P~~~DQ~~na~~v~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ll~~~ 419 (462)
.+++ +|+-||-||+++++.. ++|++.+ |.- .+|.- ...+.+++.++|.++++++
T Consensus 63 ~~d~--vi~~GGDGt~l~~~~~~~~~~~pilGI--------n~G------~lGFL------~~~~~~~~~~~l~~~~~g~ 120 (291)
T PRK02155 63 RADL--AVVLGGDGTMLGIGRQLAPYGVPLIGI--------NHG------RLGFI------TDIPLDDMQETLPPMLAGN 120 (291)
T ss_pred CCCE--EEEECCcHHHHHHHHHhcCCCCCEEEE--------cCC------Ccccc------ccCCHHHHHHHHHHHHcCC
Confidence 3455 9999999999999773 6788776 211 12322 2357788889998888644
No 275
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=62.69 E-value=20 Score=33.58 Aligned_cols=42 Identities=21% Similarity=0.199 Sum_probs=32.1
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh
Q 044266 3 RRPHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNA 50 (462)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 50 (462)
.++||+++-.|+.|= .+|..|+++||+|+++.... .+.+...
T Consensus 4 ~~m~I~IiG~GaiG~-----~lA~~L~~~g~~V~~~~r~~-~~~~~~~ 45 (313)
T PRK06249 4 ETPRIGIIGTGAIGG-----FYGAMLARAGFDVHFLLRSD-YEAVREN 45 (313)
T ss_pred cCcEEEEECCCHHHH-----HHHHHHHHCCCeEEEEEeCC-HHHHHhC
Confidence 467999998888774 46778999999999998865 4445444
No 276
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=62.36 E-value=12 Score=35.47 Aligned_cols=41 Identities=12% Similarity=0.119 Sum_probs=30.7
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH
Q 044266 4 RPHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVN 49 (462)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~ 49 (462)
++||.++..|..|. .+|..|+++||+|+++......+.+.+
T Consensus 2 ~mkI~IiG~G~mG~-----~~A~~L~~~G~~V~~~~r~~~~~~~~~ 42 (341)
T PRK08229 2 MARICVLGAGSIGC-----YLGGRLAAAGADVTLIGRARIGDELRA 42 (341)
T ss_pred CceEEEECCCHHHH-----HHHHHHHhcCCcEEEEecHHHHHHHHh
Confidence 46899998887774 578889999999999987543344443
No 277
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=62.29 E-value=15 Score=32.96 Aligned_cols=97 Identities=10% Similarity=0.182 Sum_probs=51.9
Q ss_pred CCcEEEEeccCc---cccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCcc-cccCchhHHHHhcCCc-eeecccC--c-cc
Q 044266 269 QNSVIYVAFGSF---TVFDKEQFQELASGLELTNRPFLWVVRPDITNDA-IDAYPEGFQDRVATRR-QMVGWAP--Q-QK 340 (462)
Q Consensus 269 ~~~~v~vs~Gs~---~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~v-~~~~~~p--q-~~ 340 (462)
+++.|.+..|+. -..+.+.+.++++.+.+.++++++..++. + ....-+.+.+..+.++ .+.+-.. + ..
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~a 179 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPE----EQEKEIADQIAAGLQNPVINLAGKTSLRELAA 179 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSH----HHHHHHHHHHHTTHTTTTEEETTTS-HHHHHH
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccch----HHHHHHHHHHHHhcccceEeecCCCCHHHHHH
Confidence 456888888775 33577889999999988776665554433 1 0001111111112222 2333222 3 36
Q ss_pred ccCCCCcccceeccCchhhhhhhhcCCceecc
Q 044266 341 VLTHPSIACFLSHCGWNSTMEGVSNGVPFLCW 372 (462)
Q Consensus 341 ll~~~~~~~~I~HgG~~sv~eal~~GvP~l~~ 372 (462)
++.++++ +|+ +-.|.+.=|.+.|+|+|++
T Consensus 180 li~~a~~--~I~-~Dtg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 180 LISRADL--VIG-NDTGPMHLAAALGTPTVAL 208 (247)
T ss_dssp HHHTSSE--EEE-ESSHHHHHHHHTT--EEEE
T ss_pred HHhcCCE--EEe-cCChHHHHHHHHhCCEEEE
Confidence 8888777 887 4568889999999999988
No 278
>PRK08506 replicative DNA helicase; Provisional
Probab=62.17 E-value=42 Score=33.58 Aligned_cols=42 Identities=12% Similarity=0.282 Sum_probs=34.5
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHH
Q 044266 7 VLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVV 48 (462)
Q Consensus 7 Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~ 48 (462)
|++...|+.|=..-.+.+|...++.|+.|.|++..-..+.+.
T Consensus 195 ivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~ql~ 236 (472)
T PRK08506 195 IIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAEQLM 236 (472)
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHHHHH
Confidence 566777888999999999999988999999999876554443
No 279
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=61.78 E-value=76 Score=27.63 Aligned_cols=35 Identities=14% Similarity=0.077 Sum_probs=24.6
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcch
Q 044266 5 PHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNH 44 (462)
Q Consensus 5 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 44 (462)
+++.++-. |++- -.||+.|+..||+|++.+.....
T Consensus 2 ~~~~i~Gt---GniG--~alA~~~a~ag~eV~igs~r~~~ 36 (211)
T COG2085 2 MIIAIIGT---GNIG--SALALRLAKAGHEVIIGSSRGPK 36 (211)
T ss_pred cEEEEecc---ChHH--HHHHHHHHhCCCeEEEecCCChh
Confidence 35555443 3332 57899999999999999876553
No 280
>PRK11823 DNA repair protein RadA; Provisional
Probab=61.72 E-value=89 Score=31.00 Aligned_cols=43 Identities=23% Similarity=0.291 Sum_probs=34.9
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHH
Q 044266 6 HVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVV 48 (462)
Q Consensus 6 ~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~ 48 (462)
-+++...|+.|--.-++.++..++++|+.|.+++.....+.+.
T Consensus 82 ~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~ 124 (446)
T PRK11823 82 VVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIK 124 (446)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHH
Confidence 3456667788999999999999998999999999877655443
No 281
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=61.66 E-value=43 Score=31.68 Aligned_cols=100 Identities=17% Similarity=0.230 Sum_probs=61.8
Q ss_pred CEEEEEcCCCc-cC----hHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcCCCCCCCCCCCCH
Q 044266 5 PHVLAFPYPAQ-GH----VIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIPDGMEPEGDRNDL 79 (462)
Q Consensus 5 ~~Il~~~~~~~-GH----~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~ 79 (462)
..|+|.|..+. .+ ..-+.+|++.|.++|.+|.++.++...+..++... .+.....
T Consensus 176 ~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~~e~e~~~~i~~-------~~~~~~~------------- 235 (334)
T COG0859 176 PYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGPDEEERAEEIAK-------GLPNAVI------------- 235 (334)
T ss_pred CeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecChHHHHHHHHHHH-------hcCCccc-------------
Confidence 46777776233 22 33588999999999999999998854444444321 1110000
Q ss_pred HHHHHHHHHhccHHHHHHHHHHhhccCCCceEEEeCCCcchHHHHHHHcCCceEEEccch
Q 044266 80 GMLTKTMVRVMPEKLEELIENINRLENEKITCVVADGSMGWVMEVAEKMKLRRAAFWPAA 139 (462)
Q Consensus 80 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~~~~~~A~~lgiP~v~~~~~~ 139 (462)
+ .....+.++...+ ...|++|+.. .....+|..+|.|+|.++...
T Consensus 236 ------l--~~k~sL~e~~~li-----~~a~l~I~~D--Sg~~HlAaA~~~P~I~iyg~t 280 (334)
T COG0859 236 ------L--AGKTSLEELAALI-----AGADLVIGND--SGPMHLAAALGTPTIALYGPT 280 (334)
T ss_pred ------c--CCCCCHHHHHHHH-----hcCCEEEccC--ChHHHHHHHcCCCEEEEECCC
Confidence 0 0112244444443 4677887653 567899999999999987544
No 282
>PTZ00445 p36-lilke protein; Provisional
Probab=61.59 E-value=64 Score=28.12 Aligned_cols=112 Identities=13% Similarity=-0.003 Sum_probs=58.9
Q ss_pred cChHH-HHHHHHHHHhCCCEEEEEeCCcchH--------------HHHHhhcCCCCCCCCeEE--EEcCCCCCCCCCCCC
Q 044266 16 GHVIP-LLEISQCLVKHGVKVTFLNTDYNHK--------------RVVNALGQNNYIGDQIKL--VSIPDGMEPEGDRND 78 (462)
Q Consensus 16 GH~~p-~l~La~~L~~rGh~Vt~~~~~~~~~--------------~v~~~~~~~~~~~~~i~~--~~i~~~~~~~~~~~~ 78 (462)
+|+.| +..+.++|.++|..|+++|...... .++....++ +..+ ..+-..+|.-+....
T Consensus 74 ~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~~li~~~lk~s-----~~~~~i~~~~~yyp~~w~~p~ 148 (219)
T PTZ00445 74 TSVTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISGDRMVEAALKKS-----KCDFKIKKVYAYYPKFWQEPS 148 (219)
T ss_pred ccCCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceechHHHHHHHHHhc-----CccceeeeeeeeCCcccCChh
Confidence 34555 7889999999999999999876533 222222111 2111 111111122111110
Q ss_pred HHHHHHHHHHhccHH----HHHHHHHHhhccCCCceEEEeCCCcchHHHHHHHcCCceEEEcc
Q 044266 79 LGMLTKTMVRVMPEK----LEELIENINRLENEKITCVVADGSMGWVMEVAEKMKLRRAAFWP 137 (462)
Q Consensus 79 ~~~~~~~~~~~~~~~----~~~l~~~l~~~~~~~~Dlvi~D~~~~~~~~~A~~lgiP~v~~~~ 137 (462)
....+. +.+..... ++.+++...- ..-++++.|. ....+..|+++|+-.+.+..
T Consensus 149 ~y~~~g-l~KPdp~iK~yHle~ll~~~gl---~peE~LFIDD-~~~NVeaA~~lGi~ai~f~~ 206 (219)
T PTZ00445 149 DYRPLG-LDAPMPLDKSYHLKQVCSDFNV---NPDEILFIDD-DMNNCKNALKEGYIALHVTG 206 (219)
T ss_pred hhhhhc-ccCCCccchHHHHHHHHHHcCC---CHHHeEeecC-CHHHHHHHHHCCCEEEEcCC
Confidence 000000 01111111 2555555433 4557899994 46688889999999998654
No 283
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=61.52 E-value=1e+02 Score=26.37 Aligned_cols=101 Identities=12% Similarity=0.140 Sum_probs=53.2
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCC--EEEEEeCCc-ch---HHHHHhhcCCCCCCCCeEEEEcCC-CCCCCCCCC
Q 044266 5 PHVLAFPYPAQGHVIPLLEISQCLVKHGV--KVTFLNTDY-NH---KRVVNALGQNNYIGDQIKLVSIPD-GMEPEGDRN 77 (462)
Q Consensus 5 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh--~Vt~~~~~~-~~---~~v~~~~~~~~~~~~~i~~~~i~~-~~~~~~~~~ 77 (462)
+||+++..+..+-+. .+.+.+.+.++ +|.++.+.. .. +...+. |+.+..++. .+..
T Consensus 1 ~riail~sg~gs~~~---~ll~~~~~~~l~~~I~~vi~~~~~~~~~~~A~~~---------gip~~~~~~~~~~~----- 63 (190)
T TIGR00639 1 KRIVVLISGNGSNLQ---AIIDACKEGKIPASVVLVISNKPDAYGLERAAQA---------GIPTFVLSLKDFPS----- 63 (190)
T ss_pred CeEEEEEcCCChhHH---HHHHHHHcCCCCceEEEEEECCccchHHHHHHHc---------CCCEEEECccccCc-----
Confidence 378888876666555 45555665554 777665543 22 233333 777765432 1110
Q ss_pred CHHHHHHHHHHhccHHHHHHHHHHhhccCCCceEEEeCCCcc-hHHHHHHHcCCceEEEcc
Q 044266 78 DLGMLTKTMVRVMPEKLEELIENINRLENEKITCVVADGSMG-WVMEVAEKMKLRRAAFWP 137 (462)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~-~~~~~A~~lgiP~v~~~~ 137 (462)
.+.....+.++++. .++|++|+-.+.. ....+-......++-+++
T Consensus 64 ---------~~~~~~~~~~~l~~------~~~D~iv~~~~~~il~~~~l~~~~~~~iNiHp 109 (190)
T TIGR00639 64 ---------REAFDQAIIEELRA------HEVDLVVLAGFMRILGPTFLSRFAGRILNIHP 109 (190)
T ss_pred ---------hhhhhHHHHHHHHh------cCCCEEEEeCcchhCCHHHHhhccCCEEEEeC
Confidence 01112333444444 8999999875533 444444444444555443
No 284
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=61.48 E-value=11 Score=32.16 Aligned_cols=43 Identities=16% Similarity=0.316 Sum_probs=32.5
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH
Q 044266 6 HVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVN 49 (462)
Q Consensus 6 ~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~ 49 (462)
||++.-.|+-|-+.. ..|.+.|.++|++|.++.++.-...+..
T Consensus 1 ~illgvtGsiaa~ka-~~lir~L~~~g~~V~vv~T~~A~~fv~~ 43 (181)
T TIGR00421 1 RIVVAMTGASGVIYG-IRLLEVLKEAGVEVHLVISDWAKETIKY 43 (181)
T ss_pred CEEEEEECHHHHHHH-HHHHHHHHHCCCEEEEEECccHHHHHHH
Confidence 355554555555554 8899999999999999999887777654
No 285
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=61.38 E-value=31 Score=32.03 Aligned_cols=52 Identities=21% Similarity=0.232 Sum_probs=37.0
Q ss_pred ccceeccCchhhhhhhh----cCCceeccccccchhhhHHhHhhhheeeEEeecCCCCccCHHHHHHHHHHHhcCH
Q 044266 348 ACFLSHCGWNSTMEGVS----NGVPFLCWPYFADQFLNESYICDIWKVGLRFNKNKNGIITREEIMKKVDQVLEDE 419 (462)
Q Consensus 348 ~~~I~HgG~~sv~eal~----~GvP~l~~P~~~DQ~~na~~v~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ll~~~ 419 (462)
+.+|+=||-||+++++. .++|++.+... .+|.- ...+++++.++|++++++.
T Consensus 64 d~vi~~GGDGt~l~~~~~~~~~~~Pvlgin~G--------------~lGFl------~~~~~~~~~~~l~~~~~g~ 119 (295)
T PRK01231 64 DLVIVVGGDGSLLGAARALARHNVPVLGINRG--------------RLGFL------TDIRPDELEFKLAEVLDGH 119 (295)
T ss_pred CEEEEEeCcHHHHHHHHHhcCCCCCEEEEeCC--------------ccccc------ccCCHHHHHHHHHHHHcCC
Confidence 34999999999999975 36788777321 12211 2367899999999998644
No 286
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=61.20 E-value=44 Score=32.44 Aligned_cols=40 Identities=15% Similarity=0.174 Sum_probs=35.7
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcch
Q 044266 5 PHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNH 44 (462)
Q Consensus 5 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 44 (462)
..|+|+..++.|-..-+..||..|..+|+.|.+++.+.++
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 4677888888899999999999999999999999998765
No 287
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=61.16 E-value=6 Score=32.73 Aligned_cols=40 Identities=15% Similarity=0.230 Sum_probs=29.4
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcc-hHHHHHh
Q 044266 6 HVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYN-HKRVVNA 50 (462)
Q Consensus 6 ~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~-~~~v~~~ 50 (462)
||.++..|..|+ ++|..|+++||+|++.+.+.. .+.+...
T Consensus 1 KI~ViGaG~~G~-----AlA~~la~~g~~V~l~~~~~~~~~~i~~~ 41 (157)
T PF01210_consen 1 KIAVIGAGNWGT-----ALAALLADNGHEVTLWGRDEEQIEEINET 41 (157)
T ss_dssp EEEEESSSHHHH-----HHHHHHHHCTEEEEEETSCHHHHHHHHHH
T ss_pred CEEEECcCHHHH-----HHHHHHHHcCCEEEEEeccHHHHHHHHHh
Confidence 566766666665 789999999999999999752 2344443
No 288
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=61.12 E-value=77 Score=28.18 Aligned_cols=46 Identities=11% Similarity=0.047 Sum_probs=35.3
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCC-CEEEEEeCCcchHHHHHh
Q 044266 5 PHVLAFPYPAQGHVIPLLEISQCLVKHG-VKVTFLNTDYNHKRVVNA 50 (462)
Q Consensus 5 ~~Il~~~~~~~GH~~p~l~La~~L~~rG-h~Vt~~~~~~~~~~v~~~ 50 (462)
++|++.-=++.|-..-.--|+.+|.++| ++|.++=.+++...-...
T Consensus 1 mkIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDpd~nL~~~L 47 (255)
T COG3640 1 MKIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADPDSNLPEAL 47 (255)
T ss_pred CeEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCCCCChHHhc
Confidence 3788888788888777777688888876 999999988765555444
No 289
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=61.02 E-value=9.5 Score=35.48 Aligned_cols=53 Identities=19% Similarity=0.331 Sum_probs=38.1
Q ss_pred cccceeccCchhhhhhhhc----CCceeccccccchhhhHHhHhhhheeeEEeecCCCCccCHHHHHHHHHHHhcCH
Q 044266 347 IACFLSHCGWNSTMEGVSN----GVPFLCWPYFADQFLNESYICDIWKVGLRFNKNKNGIITREEIMKKVDQVLEDE 419 (462)
Q Consensus 347 ~~~~I~HgG~~sv~eal~~----GvP~l~~P~~~DQ~~na~~v~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ll~~~ 419 (462)
++++|+=||-||++.+... ++|++.+ |.- .+|.- ...+++++.+++.++++++
T Consensus 69 ~Dlvi~iGGDGTlL~aar~~~~~~iPilGI--------N~G------~lGFL------t~~~~~~~~~~l~~l~~g~ 125 (305)
T PRK02649 69 MKFAIVLGGDGTVLSAARQLAPCGIPLLTI--------NTG------HLGFL------TEAYLNQLDEAIDQVLAGQ 125 (305)
T ss_pred cCEEEEEeCcHHHHHHHHHhcCCCCcEEEE--------eCC------CCccc------ccCCHHHHHHHHHHHHcCC
Confidence 4459999999999999774 7898877 211 12221 2357889999999998754
No 290
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=60.82 E-value=1.3e+02 Score=27.32 Aligned_cols=38 Identities=13% Similarity=0.200 Sum_probs=28.9
Q ss_pred CCEEEEEcCC--CccChHHHHHHHHHHHhCCCEEEEEeCC
Q 044266 4 RPHVLAFPYP--AQGHVIPLLEISQCLVKHGVKVTFLNTD 41 (462)
Q Consensus 4 ~~~Il~~~~~--~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 41 (462)
..|++.++.+ +-|=-.-...||..|++.|++|.++=..
T Consensus 102 ~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D 141 (274)
T TIGR03029 102 GRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDAN 141 (274)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 4566655544 4477777899999999999999998553
No 291
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=60.78 E-value=52 Score=32.37 Aligned_cols=41 Identities=17% Similarity=0.369 Sum_probs=33.4
Q ss_pred EEEEcCCCccChHHHHHHHHHHH-hCCCEEEEEeCCcchHHH
Q 044266 7 VLAFPYPAQGHVIPLLEISQCLV-KHGVKVTFLNTDYNHKRV 47 (462)
Q Consensus 7 Il~~~~~~~GH~~p~l~La~~L~-~rGh~Vt~~~~~~~~~~v 47 (462)
+++...|+.|=..-.+.+|..++ +.|+.|.|++..-..+.+
T Consensus 197 iviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~l 238 (421)
T TIGR03600 197 IVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQL 238 (421)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHH
Confidence 55677788899999999998887 689999999977655443
No 292
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=60.75 E-value=58 Score=28.95 Aligned_cols=43 Identities=19% Similarity=0.412 Sum_probs=33.2
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhC-CCEEEEEeCCcchHHHHH
Q 044266 7 VLAFPYPAQGHVIPLLEISQCLVKH-GVKVTFLNTDYNHKRVVN 49 (462)
Q Consensus 7 Il~~~~~~~GH~~p~l~La~~L~~r-Gh~Vt~~~~~~~~~~v~~ 49 (462)
+++...|+.|=..-++.++..++.. |+.|.|++.....+.+..
T Consensus 16 ~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~ 59 (242)
T cd00984 16 IIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQ 59 (242)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHH
Confidence 3455566778888889999888877 999999998876654444
No 293
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=60.72 E-value=26 Score=31.02 Aligned_cols=34 Identities=12% Similarity=0.037 Sum_probs=25.7
Q ss_pred CCceEEEe-CCCcc-hHHHHHHHcCCceEEEccchh
Q 044266 107 EKITCVVA-DGSMG-WVMEVAEKMKLRRAAFWPAAA 140 (462)
Q Consensus 107 ~~~Dlvi~-D~~~~-~~~~~A~~lgiP~v~~~~~~~ 140 (462)
..||+||+ |+..- .+..=|.++|||++.+.-+..
T Consensus 154 ~~Pd~vii~d~~~~~~ai~Ea~~l~IP~I~ivDTn~ 189 (225)
T TIGR01011 154 KLPDLLFVIDPVKEKIAVAEARKLGIPVVAIVDTNC 189 (225)
T ss_pred cCCCEEEEeCCCccHHHHHHHHHcCCCEEEEeeCCC
Confidence 57898774 55433 678889999999999876554
No 294
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=60.67 E-value=17 Score=35.36 Aligned_cols=48 Identities=23% Similarity=0.171 Sum_probs=37.0
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH
Q 044266 1 MLRRPHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVN 49 (462)
Q Consensus 1 ~~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~ 49 (462)
|.++.||++.-.|+. ..+=...+.+.|.++|++|.++.++.-...+..
T Consensus 3 ~l~~k~IllgvTGsi-aa~k~~~lv~~L~~~g~~V~vv~T~~A~~fi~~ 50 (399)
T PRK05579 3 MLAGKRIVLGVSGGI-AAYKALELVRRLRKAGADVRVVMTEAAKKFVTP 50 (399)
T ss_pred CCCCCeEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEEECHhHHHHHhH
Confidence 345678887766655 455678999999999999999999876665554
No 295
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=60.66 E-value=72 Score=32.40 Aligned_cols=108 Identities=15% Similarity=0.142 Sum_probs=66.2
Q ss_pred cChHHHHHHH-HHHHhCCCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcCCC-------------CCCC------CC
Q 044266 16 GHVIPLLEIS-QCLVKHGVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIPDG-------------MEPE------GD 75 (462)
Q Consensus 16 GH~~p~l~La-~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~-------------~~~~------~~ 75 (462)
|++.-.+.+| +.+.+.|++|.+... .+.+.+++.. .+.++.++-. .... ..
T Consensus 37 ~~~~~~~~~a~~~~~~~~~dviIsrG-~ta~~i~~~~--------~iPVv~i~~s~~Dil~al~~a~~~~~~ia~vg~~~ 107 (526)
T TIGR02329 37 LGFEDAVREIRQRLGAERCDVVVAGG-SNGAYLKSRL--------SLPVIVIKPTGFDVMQALARARRIASSIGVVTHQD 107 (526)
T ss_pred ccHHHHHHHHHHHHHhCCCcEEEECc-hHHHHHHHhC--------CCCEEEecCChhhHHHHHHHHHhcCCcEEEEecCc
Confidence 6666677777 446566787766555 4667776652 5666666511 1110 00
Q ss_pred CCCHHHHHHHHHHh--------ccHHHHHHHHHHhhccCCCceEEEeCCCcchHHHHHHHcCCceEEEccc
Q 044266 76 RNDLGMLTKTMVRV--------MPEKLEELIENINRLENEKITCVVADGSMGWVMEVAEKMKLRRAAFWPA 138 (462)
Q Consensus 76 ~~~~~~~~~~~~~~--------~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~~~~~~A~~lgiP~v~~~~~ 138 (462)
.....+.+..++.. .....+..++.+++ ..+++||.|. .+..+|+++|++.+.+.+.
T Consensus 108 ~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~~~~l~~---~G~~~viG~~---~~~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 108 TPPALRRFQAAFNLDIVQRSYVTEEDARSCVNDLRA---RGIGAVVGAG---LITDLAEQAGLHGVFLYSA 172 (526)
T ss_pred ccHHHHHHHHHhCCceEEEEecCHHHHHHHHHHHHH---CCCCEEECCh---HHHHHHHHcCCceEEEecH
Confidence 11111222222211 14567778888887 8999999995 5678899999999998764
No 296
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=60.63 E-value=1.1e+02 Score=28.37 Aligned_cols=105 Identities=14% Similarity=0.053 Sum_probs=57.3
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCc--chHHHHHhhcCCCCCCCCeEEEEcCCCCCCCCCCCCHH
Q 044266 3 RRPHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDY--NHKRVVNALGQNNYIGDQIKLVSIPDGMEPEGDRNDLG 80 (462)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~--~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~ 80 (462)
+++||+++.++..+.+..++.-.+.= +.+++|.++.+.. ......+. |+.+..++... . +.
T Consensus 88 ~~~ri~vl~Sg~g~nl~al~~~~~~~-~~~~~i~~visn~~~~~~lA~~~---------gIp~~~~~~~~--~----~~- 150 (286)
T PRK13011 88 ARPKVLIMVSKFDHCLNDLLYRWRIG-ELPMDIVGVVSNHPDLEPLAAWH---------GIPFHHFPITP--D----TK- 150 (286)
T ss_pred cCceEEEEEcCCcccHHHHHHHHHcC-CCCcEEEEEEECCccHHHHHHHh---------CCCEEEeCCCc--C----ch-
Confidence 46799999888766555544332221 2368888876533 23334444 88887765321 0 00
Q ss_pred HHHHHHHHhccHHHHHHHHHHhhccCCCceEEEeCCCcc-hHHHHHHHcCCceEEEcc
Q 044266 81 MLTKTMVRVMPEKLEELIENINRLENEKITCVVADGSMG-WVMEVAEKMKLRRAAFWP 137 (462)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~-~~~~~A~~lgiP~v~~~~ 137 (462)
......+.+.++. .++|++|.-.+.- ....+-+.+.-..+-+++
T Consensus 151 -------~~~~~~~~~~l~~------~~~Dlivlagy~~il~~~~l~~~~~~iiNiHp 195 (286)
T PRK13011 151 -------PQQEAQVLDVVEE------SGAELVVLARYMQVLSPELCRKLAGRAINIHH 195 (286)
T ss_pred -------hhhHHHHHHHHHH------hCcCEEEEeChhhhCCHHHHhhccCCeEEecc
Confidence 0111223333444 8999999875544 455555555555555443
No 297
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=60.07 E-value=54 Score=27.32 Aligned_cols=26 Identities=15% Similarity=0.235 Sum_probs=21.5
Q ss_pred ccceeccCch------hhhhhhhcCCceeccc
Q 044266 348 ACFLSHCGWN------STMEGVSNGVPFLCWP 373 (462)
Q Consensus 348 ~~~I~HgG~~------sv~eal~~GvP~l~~P 373 (462)
..+++|+|-| .+.+|...++|+|++.
T Consensus 65 ~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~ 96 (164)
T cd07039 65 GVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIA 96 (164)
T ss_pred EEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 3388888854 7889999999999995
No 298
>PRK14098 glycogen synthase; Provisional
Probab=60.04 E-value=14 Score=37.10 Aligned_cols=40 Identities=18% Similarity=0.188 Sum_probs=30.8
Q ss_pred CCCEEEEEcCC------CccChHHHHHHHHHHHhCCCEEEEEeCCc
Q 044266 3 RRPHVLAFPYP------AQGHVIPLLEISQCLVKHGVKVTFLNTDY 42 (462)
Q Consensus 3 ~~~~Il~~~~~------~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 42 (462)
+++||+|++.- +.|=-.-.-+|.++|+++||+|.++.+..
T Consensus 4 ~~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y 49 (489)
T PRK14098 4 RNFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKY 49 (489)
T ss_pred CCcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 35899998843 33444456788999999999999999965
No 299
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=59.99 E-value=13 Score=33.32 Aligned_cols=37 Identities=19% Similarity=0.258 Sum_probs=24.7
Q ss_pred EEEEEcCC------CccChHHHHHHHHHHHhCCCEEEEEeCCc
Q 044266 6 HVLAFPYP------AQGHVIPLLEISQCLVKHGVKVTFLNTDY 42 (462)
Q Consensus 6 ~Il~~~~~------~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 42 (462)
||++++.- ..|=-.-.-.|+++|+++||+|+++++..
T Consensus 1 kIl~vt~E~~P~~k~GGLgdv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 1 KILMVTSEYAPFAKVGGLGDVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp EEEEE-S-BTTTB-SSHHHHHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred CEEEEEcccCcccccCcHhHHHHHHHHHHHhcCCeEEEEEccc
Confidence 56666532 22334457789999999999999999976
No 300
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=59.97 E-value=1.5e+02 Score=27.55 Aligned_cols=112 Identities=14% Similarity=0.144 Sum_probs=62.8
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhc------CCCCCCCCeEEEEcCCCCCCCCCCCCH
Q 044266 6 HVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNALG------QNNYIGDQIKLVSIPDGMEPEGDRNDL 79 (462)
Q Consensus 6 ~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~------~~~~~~~~i~~~~i~~~~~~~~~~~~~ 79 (462)
+|.+.-.|+-|-=.-.=.|.+.|.++||+|-++.-++....--.... +.....+|+=+.++|.. + .+
T Consensus 53 viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~sr----G---~l 125 (323)
T COG1703 53 VIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSR----G---TL 125 (323)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCC----c---cc
Confidence 44576777888888888999999999999999996654221110000 00011134444443321 1 11
Q ss_pred HHHHHHHHHhccHHHHHHHHHHhhccCCCceEEEeCCCcc--hHHHHHHHcCCceEEE
Q 044266 80 GMLTKTMVRVMPEKLEELIENINRLENEKITCVVADGSMG--WVMEVAEKMKLRRAAF 135 (462)
Q Consensus 80 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~--~~~~~A~~lgiP~v~~ 135 (462)
.. .....++.+..+.. ..+|+||+...-. .=..+++...+=.+..
T Consensus 126 GG--------lS~at~~~i~~ldA---aG~DvIIVETVGvGQsev~I~~~aDt~~~v~ 172 (323)
T COG1703 126 GG--------LSRATREAIKLLDA---AGYDVIIVETVGVGQSEVDIANMADTFLVVM 172 (323)
T ss_pred hh--------hhHHHHHHHHHHHh---cCCCEEEEEecCCCcchhHHhhhcceEEEEe
Confidence 11 11223344444444 8999999996555 3446666666655553
No 301
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=59.94 E-value=1.1e+02 Score=25.97 Aligned_cols=102 Identities=11% Similarity=0.041 Sum_probs=59.4
Q ss_pred CCCCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCc-----chHHHHHhhcCCCCCCCCeEEEEcCCCCCCCCCC
Q 044266 2 LRRPHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDY-----NHKRVVNALGQNNYIGDQIKLVSIPDGMEPEGDR 76 (462)
Q Consensus 2 ~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~-----~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~ 76 (462)
.++.-|.+++..+.|-....+.+|-+-+-+|.+|.++-.=. -...+.+.. +++.+.....+.....
T Consensus 19 ~~~Gli~VYtGdGKGKTTAAlGlalRAaG~G~rV~iiQFlKg~~~~GE~~~l~~~-------~~v~~~~~g~~~~~~~-- 89 (178)
T PRK07414 19 TIEGLVQVFTSSQRNFFTSVMAQALRIAGQGTPVLIVQFLKGGIQQGPDRPIQLG-------QNLDWVRCDLPRCLDT-- 89 (178)
T ss_pred CCCCEEEEEeCCCCCchHHHHHHHHHHhcCCCEEEEEEEecCCCcchHHHHHHhC-------CCcEEEECCCCCeeeC--
Confidence 34567889999999999999988888888888888775211 112222221 3677777664432211
Q ss_pred CCHH-HHHHHHHHhccHHHHHHHHHHhhccCCCceEEEeCCCcc
Q 044266 77 NDLG-MLTKTMVRVMPEKLEELIENINRLENEKITCVVADGSMG 119 (462)
Q Consensus 77 ~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~ 119 (462)
.+.. +.. +.....++...+.+.. .++|+||.|-...
T Consensus 90 ~~~~~~~~----~~~~~~~~~a~~~l~~---~~~dlvVLDEi~~ 126 (178)
T PRK07414 90 PHLDESEK----KALQELWQYTQAVVDE---GRYSLVVLDELSL 126 (178)
T ss_pred CCcCHHHH----HHHHHHHHHHHHHHhC---CCCCEEEEehhHH
Confidence 1111 111 1222333333344444 8999999996443
No 302
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=59.88 E-value=27 Score=31.66 Aligned_cols=34 Identities=12% Similarity=0.067 Sum_probs=25.7
Q ss_pred CCceEEEe-CCCcc-hHHHHHHHcCCceEEEccchh
Q 044266 107 EKITCVVA-DGSMG-WVMEVAEKMKLRRAAFWPAAA 140 (462)
Q Consensus 107 ~~~Dlvi~-D~~~~-~~~~~A~~lgiP~v~~~~~~~ 140 (462)
..||+||+ |+..- .+..=|.++|||++.+.-+..
T Consensus 156 ~~Pd~iii~d~~~~~~ai~Ea~kl~IPiIaivDTn~ 191 (258)
T PRK05299 156 GLPDALFVVDPNKEHIAVKEARKLGIPVVAIVDTNC 191 (258)
T ss_pred cCCCEEEEeCCCccHHHHHHHHHhCCCEEEEeeCCC
Confidence 57898774 55433 678889999999999876554
No 303
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=59.86 E-value=1.1e+02 Score=26.07 Aligned_cols=112 Identities=8% Similarity=0.070 Sum_probs=68.3
Q ss_pred hHHHHHHHHHHHh-CCCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcCC----------------CCCC-CCCCCCH
Q 044266 18 VIPLLEISQCLVK-HGVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIPD----------------GMEP-EGDRNDL 79 (462)
Q Consensus 18 ~~p~l~La~~L~~-rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~----------------~~~~-~~~~~~~ 79 (462)
+...-.+++.+.+ .|.++.+-.+.+.++.++.. .+-+..+-. |+.. ..++.++
T Consensus 41 L~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~gA---------DfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~ 111 (183)
T PF02056_consen 41 LEIVERLARRMVEEAGADLKVEATTDRREALEGA---------DFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGP 111 (183)
T ss_dssp HHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTTE---------SEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTH
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCCC---------CEEEEEeeecchHHHHHHHHHHHHhCCccccccccCc
Confidence 4445566666664 67777777777776666544 444444431 1111 0234456
Q ss_pred HHHHHHHHHhccHHHHHHHHHHhhccCCCceEEEeCCCcch---HHHHHHHcC-CceEEEccchhHHH
Q 044266 80 GMLTKTMVRVMPEKLEELIENINRLENEKITCVVADGSMGW---VMEVAEKMK-LRRAAFWPAAAGLL 143 (462)
Q Consensus 80 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~~---~~~~A~~lg-iP~v~~~~~~~~~~ 143 (462)
..++..+.. -+.+.++.+.+++ .-||.-|.+...|. +..+.+..+ ++++.++.++....
T Consensus 112 GG~~~alRt--ipv~~~ia~~i~~---~~PdAw~iNytNP~~~vt~a~~r~~~~~k~vGlCh~~~~~~ 174 (183)
T PF02056_consen 112 GGFFRALRT--IPVMLDIARDIEE---LCPDAWLINYTNPMGIVTEALSRYTPKIKVVGLCHGPQGTR 174 (183)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHH---HTTTSEEEE-SSSHHHHHHHHHHHSTTSEEEEE-SHHHHHH
T ss_pred cHHHHHHhh--HHHHHHHHHHHHH---hCCCcEEEeccChHHHHHHHHHHhCCCCCEEEECCCHHHHH
Confidence 666666643 3678888888888 77899888866663 345566676 99999998876543
No 304
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=59.81 E-value=77 Score=31.40 Aligned_cols=34 Identities=26% Similarity=0.310 Sum_probs=24.5
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCc
Q 044266 4 RPHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDY 42 (462)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 42 (462)
..+++++. .|. .- +.+|+.|+++|++|++.....
T Consensus 5 ~k~v~iiG---~g~-~G-~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVG---AGV-SG-LALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEEC---CCH-HH-HHHHHHHHHCCCEEEEEeCCc
Confidence 45666653 333 33 499999999999999987754
No 305
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=59.78 E-value=95 Score=31.11 Aligned_cols=25 Identities=16% Similarity=0.108 Sum_probs=21.8
Q ss_pred CCceEEEeCCCcchHHHHHHHcCCceEE
Q 044266 107 EKITCVVADGSMGWVMEVAEKMKLRRAA 134 (462)
Q Consensus 107 ~~~Dlvi~D~~~~~~~~~A~~lgiP~v~ 134 (462)
.+||++|.+ .....+|+++|||++.
T Consensus 392 ~~pDliig~---s~~~~~a~k~giP~~~ 416 (475)
T PRK14478 392 AKADIMLSG---GRSQFIALKAGMPWLD 416 (475)
T ss_pred cCCCEEEec---CchhhhhhhcCCCEEE
Confidence 799999997 5667889999999984
No 306
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=59.78 E-value=1.5e+02 Score=29.77 Aligned_cols=47 Identities=6% Similarity=0.117 Sum_probs=38.8
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh
Q 044266 4 RPHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNA 50 (462)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 50 (462)
..-+++...|+.|--.=.+.++...+++|..|.+++.....+.+...
T Consensus 263 gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~ 309 (484)
T TIGR02655 263 DSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRN 309 (484)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHH
Confidence 44567777888899999999999999999999999988876655443
No 307
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=59.67 E-value=61 Score=32.00 Aligned_cols=41 Identities=15% Similarity=0.303 Sum_probs=35.5
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchH
Q 044266 5 PHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHK 45 (462)
Q Consensus 5 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 45 (462)
..|+|+..++.|-..-...||..|.+.|+.|.+++.+.+..
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~ 136 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRP 136 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCH
Confidence 35678888888999999999999999999999999887654
No 308
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=59.57 E-value=1e+02 Score=28.90 Aligned_cols=39 Identities=15% Similarity=0.158 Sum_probs=33.1
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcch
Q 044266 6 HVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNH 44 (462)
Q Consensus 6 ~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 44 (462)
.|+++..++-|=..-+..||..|+.+|+.|.++..+.++
T Consensus 116 vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r 154 (318)
T PRK10416 116 VILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFR 154 (318)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccc
Confidence 456777778899999999999999999999999987654
No 309
>PRK05595 replicative DNA helicase; Provisional
Probab=59.50 E-value=40 Score=33.41 Aligned_cols=41 Identities=17% Similarity=0.368 Sum_probs=32.6
Q ss_pred EEEEcCCCccChHHHHHHHHHHH-hCCCEEEEEeCCcchHHH
Q 044266 7 VLAFPYPAQGHVIPLLEISQCLV-KHGVKVTFLNTDYNHKRV 47 (462)
Q Consensus 7 Il~~~~~~~GH~~p~l~La~~L~-~rGh~Vt~~~~~~~~~~v 47 (462)
+++-..|+.|=..-.+.+|..++ +.|+.|.|++..-..+.+
T Consensus 204 iviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~l 245 (444)
T PRK05595 204 ILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQL 245 (444)
T ss_pred EEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHHH
Confidence 45667788899999999998876 579999999987655443
No 310
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=59.48 E-value=90 Score=28.68 Aligned_cols=44 Identities=14% Similarity=0.270 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhhccCCCceEEEeCCCcc--hHHHHHHHcCCceEEEccc
Q 044266 92 EKLEELIENINRLENEKITCVVADGSMG--WVMEVAEKMKLRRAAFWPA 138 (462)
Q Consensus 92 ~~~~~l~~~l~~~~~~~~Dlvi~D~~~~--~~~~~A~~lgiP~v~~~~~ 138 (462)
..+.++++.+++ .+..+|++++... .+-.+|+..|++.+.+.+.
T Consensus 207 ~~l~~l~~~ik~---~~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~l 252 (282)
T cd01017 207 KQLAELVEFVKK---SDVKYIFFEENASSKIAETLAKETGAKLLVLNPL 252 (282)
T ss_pred HHHHHHHHHHHH---cCCCEEEEeCCCChHHHHHHHHHcCCcEEEeccc
Confidence 446666777776 8999999998777 5567899999999876553
No 311
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=59.46 E-value=47 Score=29.19 Aligned_cols=45 Identities=13% Similarity=0.185 Sum_probs=34.7
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh
Q 044266 6 HVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNA 50 (462)
Q Consensus 6 ~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 50 (462)
-+++...|+.|-..-.+.++...+++|+.|.+++.....+.+.+.
T Consensus 18 ~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~ 62 (224)
T TIGR03880 18 VIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGY 62 (224)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHH
Confidence 455666677788888888888877889999999998876655544
No 312
>PRK08006 replicative DNA helicase; Provisional
Probab=59.12 E-value=66 Score=32.16 Aligned_cols=41 Identities=7% Similarity=0.201 Sum_probs=32.7
Q ss_pred EEEEcCCCccChHHHHHHHHHHH-hCCCEEEEEeCCcchHHH
Q 044266 7 VLAFPYPAQGHVIPLLEISQCLV-KHGVKVTFLNTDYNHKRV 47 (462)
Q Consensus 7 Il~~~~~~~GH~~p~l~La~~L~-~rGh~Vt~~~~~~~~~~v 47 (462)
|++-.-|+.|-..-.+.+|...+ +.|+.|.|++..-..+.+
T Consensus 227 iiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~~~ql 268 (471)
T PRK08006 227 IIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPGEQI 268 (471)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCCHHHH
Confidence 45677889999999999999987 469999999877554433
No 313
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=58.71 E-value=1e+02 Score=29.81 Aligned_cols=34 Identities=21% Similarity=0.198 Sum_probs=26.8
Q ss_pred CCEEEEEc-CCCccChHHHHHHHHHHHhCCCEEEEEeCCc
Q 044266 4 RPHVLAFP-YPAQGHVIPLLEISQCLVKHGVKVTFLNTDY 42 (462)
Q Consensus 4 ~~~Il~~~-~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 42 (462)
..+|.++. .|..|. .+|+.|.++||+|++.....
T Consensus 98 ~~~I~IiGG~GlmG~-----slA~~l~~~G~~V~~~d~~~ 132 (374)
T PRK11199 98 LRPVVIVGGKGQLGR-----LFAKMLTLSGYQVRILEQDD 132 (374)
T ss_pred cceEEEEcCCChhhH-----HHHHHHHHCCCeEEEeCCCc
Confidence 46888886 676675 57889999999999998643
No 314
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=58.50 E-value=1.1e+02 Score=28.16 Aligned_cols=103 Identities=17% Similarity=0.108 Sum_probs=56.4
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcc--hHHHHHhhcCCCCCCCCeEEEEcCCCCCCCCCCCCHH
Q 044266 3 RRPHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYN--HKRVVNALGQNNYIGDQIKLVSIPDGMEPEGDRNDLG 80 (462)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~--~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~ 80 (462)
+++||+++.++..+.+..++.-.+. -+-+++|.++.+... ....++. |+.+..++.... ..
T Consensus 88 ~~~ri~vl~Sg~gsnl~al~~~~~~-~~~~~~i~~visn~~~~~~lA~~~---------gIp~~~~~~~~~---~~---- 150 (286)
T PRK06027 88 ERKRVVILVSKEDHCLGDLLWRWRS-GELPVEIAAVISNHDDLRSLVERF---------GIPFHHVPVTKE---TK---- 150 (286)
T ss_pred cCcEEEEEEcCCCCCHHHHHHHHHc-CCCCcEEEEEEEcChhHHHHHHHh---------CCCEEEeccCcc---cc----
Confidence 4679999998887777665543222 112688888876542 2333333 888877664210 00
Q ss_pred HHHHHHHHhccHHHHHHHHHHhhccCCCceEEEeCCCcc-hHHHHHHHcCCceEEE
Q 044266 81 MLTKTMVRVMPEKLEELIENINRLENEKITCVVADGSMG-WVMEVAEKMKLRRAAF 135 (462)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~-~~~~~A~~lgiP~v~~ 135 (462)
+.....+.+.++. .++|++|.-.+.- ....+-+.+.-.++-+
T Consensus 151 -------~~~~~~~~~~l~~------~~~Dlivlagy~~il~~~~l~~~~~~iiNi 193 (286)
T PRK06027 151 -------AEAEARLLELIDE------YQPDLVVLARYMQILSPDFVARFPGRIINI 193 (286)
T ss_pred -------chhHHHHHHHHHH------hCCCEEEEecchhhcCHHHHhhccCCceec
Confidence 0111223334444 8999999875443 4444444444344433
No 315
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=58.24 E-value=13 Score=34.32 Aligned_cols=54 Identities=20% Similarity=0.456 Sum_probs=38.5
Q ss_pred CCCcccceeccCchhhhhhhh----cCCceeccccccchhhhHHhHhhhheeeEEeecCCCCccCHHHHHHHHHHHhcCH
Q 044266 344 HPSIACFLSHCGWNSTMEGVS----NGVPFLCWPYFADQFLNESYICDIWKVGLRFNKNKNGIITREEIMKKVDQVLEDE 419 (462)
Q Consensus 344 ~~~~~~~I~HgG~~sv~eal~----~GvP~l~~P~~~DQ~~na~~v~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ll~~~ 419 (462)
.+++ +|+=||-||++.+.. .++|++.+ |.- .+|.- ...+++++.+++++++++.
T Consensus 64 ~~dl--vi~lGGDGT~L~aa~~~~~~~~PilGI--------N~G------~lGFL------t~~~~~~~~~~l~~i~~g~ 121 (292)
T PRK01911 64 SADM--VISIGGDGTFLRTATYVGNSNIPILGI--------NTG------RLGFL------ATVSKEEIEETIDELLNGD 121 (292)
T ss_pred CCCE--EEEECCcHHHHHHHHHhcCCCCCEEEE--------ecC------CCCcc------cccCHHHHHHHHHHHHcCC
Confidence 4455 999999999999977 37888877 211 12222 2357889999999998654
No 316
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=57.52 E-value=1.1e+02 Score=28.07 Aligned_cols=42 Identities=17% Similarity=0.178 Sum_probs=34.3
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh
Q 044266 4 RPHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNA 50 (462)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 50 (462)
+.+|+++-.|..|.. +|+.|.++||.|.++..+......+..
T Consensus 3 ~~~v~IvG~GliG~s-----~a~~l~~~g~~v~i~g~d~~~~~~~~a 44 (279)
T COG0287 3 SMKVGIVGLGLMGGS-----LARALKEAGLVVRIIGRDRSAATLKAA 44 (279)
T ss_pred CcEEEEECCchHHHH-----HHHHHHHcCCeEEEEeecCcHHHHHHH
Confidence 468888888888764 789999999999999998887666554
No 317
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=57.17 E-value=77 Score=31.32 Aligned_cols=88 Identities=15% Similarity=0.080 Sum_probs=53.0
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcCCCCCCCCCCCCHHHHH
Q 044266 4 RPHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIPDGMEPEGDRNDLGMLT 83 (462)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~ 83 (462)
..|+++.. .-...+.+++.|.+.|-+|..+......+...... .+ . .. ..+.
T Consensus 311 Gkrvai~~-----~~~~~~~l~~~l~elGm~v~~~~~~~~~~~~~~~~-------~~-~-~~----------~~D~---- 362 (432)
T TIGR01285 311 GKKVAIAA-----EPDLLAAWATFFTSMGAQIVAAVTTTGSPLLQKLP-------VE-T-VV----------IGDL---- 362 (432)
T ss_pred CCEEEEEc-----CHHHHHHHHHHHHHCCCEEEEEEeCCCCHHHHhCC-------cC-c-EE----------eCCH----
Confidence 34666554 22466888888888898888777765433221110 00 0 00 0111
Q ss_pred HHHHHhccHHHHHHHHHHhhccCCCceEEEeCCCcchHHHHHHHcCCceEEEc
Q 044266 84 KTMVRVMPEKLEELIENINRLENEKITCVVADGSMGWVMEVAEKMKLRRAAFW 136 (462)
Q Consensus 84 ~~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~~~~~~A~~lgiP~v~~~ 136 (462)
..+.++++. .++|++|.+. ....+|+++|||++.+.
T Consensus 363 --------~~l~~~i~~------~~~dliig~s---~~k~~A~~l~ip~ir~g 398 (432)
T TIGR01285 363 --------EDLEDLACA------AGADLLITNS---HGRALAQRLALPLVRAG 398 (432)
T ss_pred --------HHHHHHHhh------cCCCEEEECc---chHHHHHHcCCCEEEec
Confidence 123444444 8999999884 45788999999999753
No 318
>PRK14974 cell division protein FtsY; Provisional
Probab=57.10 E-value=1.2e+02 Score=28.81 Aligned_cols=40 Identities=15% Similarity=0.190 Sum_probs=34.0
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcch
Q 044266 5 PHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNH 44 (462)
Q Consensus 5 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 44 (462)
..|+|+..++.|-..-...||..|.++|+.|.+++...++
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R 180 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFR 180 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCc
Confidence 3466788888899999999999999999999998877553
No 319
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=56.99 E-value=1.3e+02 Score=25.92 Aligned_cols=40 Identities=20% Similarity=0.351 Sum_probs=29.6
Q ss_pred CCEEEEEcC--CCccChHHHHHHHHHHHhCCCEEEEEeCCcc
Q 044266 4 RPHVLAFPY--PAQGHVIPLLEISQCLVKHGVKVTFLNTDYN 43 (462)
Q Consensus 4 ~~~Il~~~~--~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 43 (462)
.+|++.++. ++.|=..-...||..|+++|++|.++=....
T Consensus 16 ~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~ 57 (204)
T TIGR01007 16 EIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMR 57 (204)
T ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 356655543 3557777899999999999999998865543
No 320
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=56.80 E-value=85 Score=31.80 Aligned_cols=27 Identities=4% Similarity=0.069 Sum_probs=23.1
Q ss_pred CCceEEEeCCCcchHHHHHHHcCCceEEEc
Q 044266 107 EKITCVVADGSMGWVMEVAEKMKLRRAAFW 136 (462)
Q Consensus 107 ~~~Dlvi~D~~~~~~~~~A~~lgiP~v~~~ 136 (462)
.+||++|.+. .+..+|+++|||++.+.
T Consensus 436 ~~~DlliG~s---~~k~~a~~~giPlir~g 462 (515)
T TIGR01286 436 EPVDFLIGNS---YGKYIQRDTLVPLIRIG 462 (515)
T ss_pred cCCCEEEECc---hHHHHHHHcCCCEEEec
Confidence 8999999884 46788999999998864
No 321
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=56.78 E-value=14 Score=34.16 Aligned_cols=54 Identities=22% Similarity=0.251 Sum_probs=39.0
Q ss_pred CCCcccceeccCchhhhhhhh----cCCceeccccccchhhhHHhHhhhheeeEEeecCCCCccCHHHHHHHHHHHhcCH
Q 044266 344 HPSIACFLSHCGWNSTMEGVS----NGVPFLCWPYFADQFLNESYICDIWKVGLRFNKNKNGIITREEIMKKVDQVLEDE 419 (462)
Q Consensus 344 ~~~~~~~I~HgG~~sv~eal~----~GvP~l~~P~~~DQ~~na~~v~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ll~~~ 419 (462)
.+++ +|+=||-||++.+.. .++|++.+ |.- .+|.-- .++++++.+++++++++.
T Consensus 68 ~~D~--vi~lGGDGT~L~aa~~~~~~~~PilGI--------N~G------~lGFL~------~~~~~~~~~~l~~i~~g~ 125 (296)
T PRK04539 68 YCDL--VAVLGGDGTFLSVAREIAPRAVPIIGI--------NQG------HLGFLT------QIPREYMTDKLLPVLEGK 125 (296)
T ss_pred CCCE--EEEECCcHHHHHHHHHhcccCCCEEEE--------ecC------CCeEee------ccCHHHHHHHHHHHHcCC
Confidence 4555 999999999999974 47898887 221 133333 257899999999998654
No 322
>PRK08760 replicative DNA helicase; Provisional
Probab=56.53 E-value=49 Score=33.11 Aligned_cols=41 Identities=15% Similarity=0.228 Sum_probs=32.8
Q ss_pred EEEEcCCCccChHHHHHHHHHHHh-CCCEEEEEeCCcchHHH
Q 044266 7 VLAFPYPAQGHVIPLLEISQCLVK-HGVKVTFLNTDYNHKRV 47 (462)
Q Consensus 7 Il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~~~~~v 47 (462)
|++...|+.|-..-.+.+|...+. .|+.|.|++..-..+.+
T Consensus 232 ivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql 273 (476)
T PRK08760 232 IILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQL 273 (476)
T ss_pred EEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHH
Confidence 566778899999999999998874 59999999887655433
No 323
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=56.42 E-value=55 Score=29.54 Aligned_cols=81 Identities=16% Similarity=0.279 Sum_probs=51.0
Q ss_pred CCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHhccHHHHHHHHHHhhccCCCceE
Q 044266 32 GVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIPDGMEPEGDRNDLGMLTKTMVRVMPEKLEELIENINRLENEKITC 111 (462)
Q Consensus 32 Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Dl 111 (462)
.....+..++.+.-..... |+....+-. ...+. ......+.++.+.+++ .+..+
T Consensus 149 ~~~~~v~~h~~~~Y~~~~~---------gl~~~~~~~-~~~~~-------------~ps~~~l~~l~~~ik~---~~v~~ 202 (256)
T PF01297_consen 149 PGRPVVVYHDAFQYFAKRY---------GLKVIGVIE-ISPGE-------------EPSPKDLAELIKLIKE---NKVKC 202 (256)
T ss_dssp SGGEEEEEESTTHHHHHHT---------T-EEEEEES-SSSSS-------------SS-HHHHHHHHHHHHH---TT-SE
T ss_pred cCCeEEEEChHHHHHHHhc---------CCceeeeec-ccccc-------------CCCHHHHHHHHHHhhh---cCCcE
Confidence 3456677777777777776 888766541 11111 1123445666666666 99999
Q ss_pred EEeCCCcc--hHHHHHHHcCCceEEEccc
Q 044266 112 VVADGSMG--WVMEVAEKMKLRRAAFWPA 138 (462)
Q Consensus 112 vi~D~~~~--~~~~~A~~lgiP~v~~~~~ 138 (462)
|+++.... .+-.+|+..|+|++.+.+.
T Consensus 203 i~~e~~~~~~~~~~la~~~g~~vv~ld~l 231 (256)
T PF01297_consen 203 IFTEPQFSSKLAEALAKETGVKVVYLDPL 231 (256)
T ss_dssp EEEETTS-THHHHHHHHCCT-EEEESSTT
T ss_pred EEecCCCChHHHHHHHHHcCCcEEEeCCC
Confidence 99998766 4678899999999887654
No 324
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=56.39 E-value=1.2e+02 Score=25.29 Aligned_cols=39 Identities=21% Similarity=0.278 Sum_probs=33.5
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchH
Q 044266 7 VLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHK 45 (462)
Q Consensus 7 Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 45 (462)
+++...++-|-......++..|++.|..|.++..+..+.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~ 41 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRP 41 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCh
Confidence 567777888999999999999999999999999876643
No 325
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=56.03 E-value=1.3e+02 Score=28.22 Aligned_cols=32 Identities=16% Similarity=0.185 Sum_probs=22.4
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCC
Q 044266 5 PHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTD 41 (462)
Q Consensus 5 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 41 (462)
|||+|+..+. -.+...+.|.++||+|..+.+.
T Consensus 1 mkIvf~G~~~-----~a~~~L~~L~~~~~~i~~Vvt~ 32 (309)
T PRK00005 1 MRIVFMGTPE-----FAVPSLKALLESGHEVVAVVTQ 32 (309)
T ss_pred CEEEEECCCH-----HHHHHHHHHHHCCCcEEEEECC
Confidence 4888875433 3466778888889998866653
No 326
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=55.83 E-value=10 Score=34.59 Aligned_cols=58 Identities=12% Similarity=0.233 Sum_probs=38.4
Q ss_pred ccccCCCCcccceeccCchhhhhhhh----cCCceeccccccchhhhHHhHhhhheeeEEeecCCCCccCHHHHHHHHHH
Q 044266 339 QKVLTHPSIACFLSHCGWNSTMEGVS----NGVPFLCWPYFADQFLNESYICDIWKVGLRFNKNKNGIITREEIMKKVDQ 414 (462)
Q Consensus 339 ~~ll~~~~~~~~I~HgG~~sv~eal~----~GvP~l~~P~~~DQ~~na~~v~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ 414 (462)
..+...+++ +|+=||-||++.+.. .++|++.+ |.. .+|.-. ..+++++.+.+.+
T Consensus 37 ~~~~~~~d~--vi~iGGDGT~L~aa~~~~~~~~PilgI--------n~G------~lGFL~------~~~~~~~~~~l~~ 94 (272)
T PRK02231 37 EEIGQRAQL--AIVIGGDGNMLGRARVLAKYDIPLIGI--------NRG------NLGFLT------DIDPKNAYEQLEA 94 (272)
T ss_pred HHhCcCCCE--EEEECCcHHHHHHHHHhccCCCcEEEE--------eCC------CCcccc------cCCHHHHHHHHHH
Confidence 334444555 999999999998755 36888776 211 133322 2577888888888
Q ss_pred HhcC
Q 044266 415 VLED 418 (462)
Q Consensus 415 ll~~ 418 (462)
++++
T Consensus 95 ~~~~ 98 (272)
T PRK02231 95 CLER 98 (272)
T ss_pred HHhc
Confidence 8863
No 327
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=55.70 E-value=1.2e+02 Score=27.86 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=31.9
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhC-C-CEEEEEeCCcch
Q 044266 6 HVLAFPYPAQGHVIPLLEISQCLVKH-G-VKVTFLNTDYNH 44 (462)
Q Consensus 6 ~Il~~~~~~~GH~~p~l~La~~L~~r-G-h~Vt~~~~~~~~ 44 (462)
.|+|+...+.|-..-...||..++.+ | +.|.+++.+.+.
T Consensus 196 vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r 236 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYR 236 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence 45566666779999999999999876 5 999999998764
No 328
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=55.51 E-value=23 Score=32.87 Aligned_cols=41 Identities=22% Similarity=0.175 Sum_probs=29.6
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh
Q 044266 5 PHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNA 50 (462)
Q Consensus 5 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 50 (462)
+||+++..|+.| ..+|..|++.||+|+++..+...+.+.+.
T Consensus 1 mkI~IiG~G~iG-----~~~a~~L~~~g~~V~~~~r~~~~~~~~~~ 41 (305)
T PRK12921 1 MRIAVVGAGAVG-----GTFGGRLLEAGRDVTFLVRPKRAKALRER 41 (305)
T ss_pred CeEEEECCCHHH-----HHHHHHHHHCCCceEEEecHHHHHHHHhC
Confidence 378888777776 45788899999999999874334444443
No 329
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=55.45 E-value=1.3e+02 Score=25.57 Aligned_cols=52 Identities=17% Similarity=0.127 Sum_probs=35.3
Q ss_pred cCCceecccc----ccch---hhhHHhHhhhheeeEEeecC---------CCCccCHHHHHHHHHHHhc
Q 044266 365 NGVPFLCWPY----FADQ---FLNESYICDIWKVGLRFNKN---------KNGIITREEIMKKVDQVLE 417 (462)
Q Consensus 365 ~GvP~l~~P~----~~DQ---~~na~~v~~~~g~g~~~~~~---------~~~~~~~~~l~~~i~~ll~ 417 (462)
.++|++++|- ..+. ..|..++++ +|+=+.-+.. ..+-.+.++|.+.+.+.+.
T Consensus 112 ~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~-~G~~vi~p~~g~la~~~~g~g~~~~~~~i~~~v~~~~~ 179 (182)
T PRK07313 112 ATTPKLIAPAMNTKMYENPATQRNLKTLKE-DGVQEIEPKEGLLACGDEGYGALADIETILETIENTLK 179 (182)
T ss_pred CCCCEEEEECCCHHHhcCHHHHHHHHHHHH-CCCEEECCCCCccccCCccCCCCCCHHHHHHHHHHHhc
Confidence 3899999995 3343 567888888 4766655431 1234577888888877764
No 330
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=54.67 E-value=18 Score=30.69 Aligned_cols=42 Identities=19% Similarity=0.168 Sum_probs=31.2
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHH
Q 044266 6 HVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVV 48 (462)
Q Consensus 6 ~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~ 48 (462)
||++.-.|+.| .+-...+.+.|.++|++|.++.++.-...+.
T Consensus 2 ~I~lgvtGs~~-a~~~~~ll~~L~~~g~~V~vi~T~~A~~fi~ 43 (177)
T TIGR02113 2 KILLAVTGSIA-AYKAADLTSQLTKLGYDVTVLMTQAATQFIT 43 (177)
T ss_pred EEEEEEcCHHH-HHHHHHHHHHHHHCCCEEEEEEChHHHhhcc
Confidence 67666555544 4455699999999999999999987655543
No 331
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=54.64 E-value=75 Score=28.79 Aligned_cols=39 Identities=10% Similarity=0.117 Sum_probs=32.3
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcch
Q 044266 6 HVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNH 44 (462)
Q Consensus 6 ~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 44 (462)
-+++...|+.|=..-.++++...+++|..|.|++.....
T Consensus 38 ~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~~ 76 (259)
T TIGR03878 38 VINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESPA 76 (259)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCc
Confidence 356667778899999999999988899999999987543
No 332
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=54.62 E-value=15 Score=34.02 Aligned_cols=53 Identities=9% Similarity=0.157 Sum_probs=36.8
Q ss_pred cccceeccCchhhhhhhh----cCCceeccccccchhhhHHhHhhhheeeEEeecCCCCccCHHHHHHHHHHHhcCH
Q 044266 347 IACFLSHCGWNSTMEGVS----NGVPFLCWPYFADQFLNESYICDIWKVGLRFNKNKNGIITREEIMKKVDQVLEDE 419 (462)
Q Consensus 347 ~~~~I~HgG~~sv~eal~----~GvP~l~~P~~~DQ~~na~~v~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ll~~~ 419 (462)
++++|+=||-||++.++. +++|++.+-. - .+|.- ..++++++.+++++++++.
T Consensus 64 ~d~vi~lGGDGT~L~aa~~~~~~~~Pilgin~--------G------~lGFl------~~~~~~~~~~~l~~i~~g~ 120 (292)
T PRK03378 64 ADLAIVVGGDGNMLGAARVLARYDIKVIGINR--------G------NLGFL------TDLDPDNALQQLSDVLEGH 120 (292)
T ss_pred CCEEEEECCcHHHHHHHHHhcCCCCeEEEEEC--------C------CCCcc------cccCHHHHHHHHHHHHcCC
Confidence 344999999999999974 3678877621 1 11221 2356889999999998654
No 333
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=54.61 E-value=43 Score=26.86 Aligned_cols=46 Identities=11% Similarity=0.110 Sum_probs=39.0
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh
Q 044266 5 PHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNA 50 (462)
Q Consensus 5 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 50 (462)
.+|++-+..+-+|-.----++..|.++|++|..+......+.+.+.
T Consensus 2 ~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~a 47 (134)
T TIGR01501 2 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKA 47 (134)
T ss_pred CeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
Confidence 4899999999999999999999999999999999987765544443
No 334
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=54.32 E-value=42 Score=31.65 Aligned_cols=34 Identities=15% Similarity=0.297 Sum_probs=29.7
Q ss_pred EcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcc
Q 044266 10 FPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYN 43 (462)
Q Consensus 10 ~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 43 (462)
++.|+.|-.--...|++.|.++|++|.+++-.+-
T Consensus 43 ltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRGYg 76 (326)
T PF02606_consen 43 LTVGGTGKTPLVIWLARLLQARGYRPAILSRGYG 76 (326)
T ss_pred cccCCCCchHHHHHHHHHHHhcCCceEEEcCCCC
Confidence 4567889888899999999999999999998654
No 335
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.11 E-value=1.1e+02 Score=27.14 Aligned_cols=39 Identities=13% Similarity=0.187 Sum_probs=28.8
Q ss_pred cHHHHHHHHHHhhccCCCceEEEeCCCcc---hHHHHHHHcCCceEE
Q 044266 91 PEKLEELIENINRLENEKITCVVADGSMG---WVMEVAEKMKLRRAA 134 (462)
Q Consensus 91 ~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~---~~~~~A~~lgiP~v~ 134 (462)
....+.+++.+ .+.++.+.|..+. -+..+|.+.|||++.
T Consensus 137 ~~aM~~~m~~L-----k~r~l~flDs~T~a~S~a~~iAk~~gVp~~~ 178 (250)
T COG2861 137 EDAMEKLMEAL-----KERGLYFLDSGTIANSLAGKIAKEIGVPVIK 178 (250)
T ss_pred HHHHHHHHHHH-----HHCCeEEEcccccccchhhhhHhhcCCceee
Confidence 34455555665 5678999998777 356789999999996
No 336
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=53.99 E-value=64 Score=32.29 Aligned_cols=39 Identities=26% Similarity=0.400 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcC
Q 044266 18 VIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIP 67 (462)
Q Consensus 18 ~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~ 67 (462)
-.-++.+|+.|.+.|+++ +++....+.+++. |+.+..+.
T Consensus 14 K~~iv~lAk~L~~lGfeI--~AT~GTak~L~e~---------GI~v~~V~ 52 (513)
T PRK00881 14 KTGIVEFAKALVELGVEI--LSTGGTAKLLAEA---------GIPVTEVS 52 (513)
T ss_pred cccHHHHHHHHHHCCCEE--EEcchHHHHHHHC---------CCeeEEee
Confidence 556889999999999998 4677888999888 78777765
No 337
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=53.71 E-value=50 Score=27.08 Aligned_cols=91 Identities=12% Similarity=0.178 Sum_probs=51.7
Q ss_pred HHHHHHHHHhCCCEEEEEeCCcchHHHHHhhcCCCCCCCCeE----EEEcCCCCCCCCCCCCHHHHHHHHHHhccHHHHH
Q 044266 21 LLEISQCLVKHGVKVTFLNTDYNHKRVVNALGQNNYIGDQIK----LVSIPDGMEPEGDRNDLGMLTKTMVRVMPEKLEE 96 (462)
Q Consensus 21 ~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (462)
..++.+.|.++|+.+.++|..... .+...... .++. .....+..... +.....++.
T Consensus 82 ~~~~L~~l~~~~~~~~i~Sn~~~~-~~~~~l~~-----~~~~~~f~~i~~~~~~~~~--------------Kp~~~~~~~ 141 (176)
T PF13419_consen 82 VRELLERLKAKGIPLVIVSNGSRE-RIERVLER-----LGLDDYFDEIISSDDVGSR--------------KPDPDAYRR 141 (176)
T ss_dssp HHHHHHHHHHTTSEEEEEESSEHH-HHHHHHHH-----TTHGGGCSEEEEGGGSSSS--------------TTSHHHHHH
T ss_pred hhhhhhhcccccceeEEeecCCcc-cccccccc-----cccccccccccccchhhhh--------------hhHHHHHHH
Confidence 456778888899999999987643 22221110 0332 11111111110 111223444
Q ss_pred HHHHHhhccCCCceEEEeCCCcchHHHHHHHcCCceEEE
Q 044266 97 LIENINRLENEKITCVVADGSMGWVMEVAEKMKLRRAAF 135 (462)
Q Consensus 97 l~~~l~~~~~~~~Dlvi~D~~~~~~~~~A~~lgiP~v~~ 135 (462)
+++.+.- .+-+++++|... .....|+..|++.|.+
T Consensus 142 ~~~~~~~---~p~~~~~vgD~~-~d~~~A~~~G~~~i~v 176 (176)
T PF13419_consen 142 ALEKLGI---PPEEILFVGDSP-SDVEAAKEAGIKTIWV 176 (176)
T ss_dssp HHHHHTS---SGGGEEEEESSH-HHHHHHHHTTSEEEEE
T ss_pred HHHHcCC---CcceEEEEeCCH-HHHHHHHHcCCeEEeC
Confidence 4444433 556788888666 8999999999999864
No 338
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=53.68 E-value=27 Score=32.78 Aligned_cols=42 Identities=21% Similarity=0.288 Sum_probs=29.5
Q ss_pred cHHHHHHHHHHhhccCCCceEEEeCCCcch----------HHHHHHHcCCceEEE
Q 044266 91 PEKLEELIENINRLENEKITCVVADGSMGW----------VMEVAEKMKLRRAAF 135 (462)
Q Consensus 91 ~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~~----------~~~~A~~lgiP~v~~ 135 (462)
+...+++++-++. .+||++|+-+.+.. +..+.++++||.++-
T Consensus 66 eea~~~i~~mv~~---~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vta 117 (349)
T PF07355_consen 66 EEALKKILEMVKK---LKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTA 117 (349)
T ss_pred HHHHHHHHHHHHh---cCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEE
Confidence 3344455555555 99999999987653 224567899999974
No 339
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=53.61 E-value=1.1e+02 Score=30.29 Aligned_cols=36 Identities=25% Similarity=0.307 Sum_probs=31.0
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcch
Q 044266 4 RPHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNH 44 (462)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 44 (462)
.+||+++-.+-.| +++++.|.++|++|++.=.....
T Consensus 7 ~~kv~V~GLG~sG-----~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSG-----LAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEeccccc-----HHHHHHHHHCCCeEEEEcCCCCc
Confidence 5689999988888 89999999999999998865544
No 340
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=53.58 E-value=1.2e+02 Score=24.65 Aligned_cols=36 Identities=19% Similarity=0.216 Sum_probs=30.8
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCc
Q 044266 7 VLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDY 42 (462)
Q Consensus 7 Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 42 (462)
|.+...++.|--..+..++..|.++|++|.++....
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~ 37 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAIDP 37 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCC
Confidence 567777788988889999999999999999988663
No 341
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=53.17 E-value=1.5e+02 Score=27.12 Aligned_cols=40 Identities=15% Similarity=0.174 Sum_probs=33.6
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcch
Q 044266 5 PHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNH 44 (462)
Q Consensus 5 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 44 (462)
.+|+|+..++.|-..-+..|+..+..+|+.|.+++...++
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~r 115 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 115 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 5788888788888888888999998899999999987664
No 342
>PLN02891 IMP cyclohydrolase
Probab=53.10 E-value=65 Score=32.24 Aligned_cols=41 Identities=12% Similarity=0.148 Sum_probs=32.9
Q ss_pred cChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcC
Q 044266 16 GHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIP 67 (462)
Q Consensus 16 GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~ 67 (462)
++-.-+..+|+.|.+.|.+ ++++....+.+++. |+.+..+.
T Consensus 30 sDKtgi~~fAk~L~~~gve--IiSTgGTak~L~e~---------Gi~v~~Vs 70 (547)
T PLN02891 30 SDKTDLALLANGLQELGYT--IVSTGGTASALEAA---------GVSVTKVE 70 (547)
T ss_pred ecccCHHHHHHHHHHCCCE--EEEcchHHHHHHHc---------CCceeeHH
Confidence 4555688999999997655 57888888999888 88888876
No 343
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=52.93 E-value=17 Score=33.77 Aligned_cols=53 Identities=19% Similarity=0.248 Sum_probs=38.1
Q ss_pred cccceeccCchhhhhhhhc----CCceeccccccchhhhHHhHhhhheeeEEeecCCCCccCHHHHHHHHHHHhcCH
Q 044266 347 IACFLSHCGWNSTMEGVSN----GVPFLCWPYFADQFLNESYICDIWKVGLRFNKNKNGIITREEIMKKVDQVLEDE 419 (462)
Q Consensus 347 ~~~~I~HgG~~sv~eal~~----GvP~l~~P~~~DQ~~na~~v~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ll~~~ 419 (462)
++++|+=||-||++.+... ++|++.+.. - .+|.-. ...++++.+++++++++.
T Consensus 73 ~D~vi~lGGDGT~L~aar~~~~~~~PilGIN~--------G------~lGFL~------~~~~~~~~~~l~~i~~g~ 129 (306)
T PRK03372 73 CELVLVLGGDGTILRAAELARAADVPVLGVNL--------G------HVGFLA------EAEAEDLDEAVERVVDRD 129 (306)
T ss_pred CCEEEEEcCCHHHHHHHHHhccCCCcEEEEec--------C------CCceec------cCCHHHHHHHHHHHHcCC
Confidence 3449999999999998763 889888732 1 233333 256788999999998654
No 344
>PRK06321 replicative DNA helicase; Provisional
Probab=52.88 E-value=87 Score=31.33 Aligned_cols=42 Identities=14% Similarity=0.310 Sum_probs=33.4
Q ss_pred EEEEcCCCccChHHHHHHHHHHH-hCCCEEEEEeCCcchHHHH
Q 044266 7 VLAFPYPAQGHVIPLLEISQCLV-KHGVKVTFLNTDYNHKRVV 48 (462)
Q Consensus 7 Il~~~~~~~GH~~p~l~La~~L~-~rGh~Vt~~~~~~~~~~v~ 48 (462)
|++..-|+.|-..-.+.+|...+ +.|..|.|++-.-..+.+.
T Consensus 229 iiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql~ 271 (472)
T PRK06321 229 MILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQLI 271 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHH
Confidence 45677889999999999999987 4699999998776554443
No 345
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=52.65 E-value=1.3e+02 Score=28.63 Aligned_cols=112 Identities=15% Similarity=0.132 Sum_probs=62.7
Q ss_pred CCCCCEEEEEcCCCc-cChHHHHHHHHHHHhCC--CEEEEEeCCcchHH----HHHhhcCCCCCCCCeEEEEcCCCCCCC
Q 044266 1 MLRRPHVLAFPYPAQ-GHVIPLLEISQCLVKHG--VKVTFLNTDYNHKR----VVNALGQNNYIGDQIKLVSIPDGMEPE 73 (462)
Q Consensus 1 ~~~~~~Il~~~~~~~-GH~~p~l~La~~L~~rG--h~Vt~~~~~~~~~~----v~~~~~~~~~~~~~i~~~~i~~~~~~~ 73 (462)
|-++++++..|..-. |. ..+-.+.+.+.+.| .+|.+++.+...+. +.+..... + .+..+. ..
T Consensus 1 ~~~~~~~~~~p~~i~~G~-g~l~~l~~~l~~~~~~~~~livtd~~~~~~~~~~l~~~l~~~-----~-~~~~~~---~~- 69 (350)
T PRK00843 1 MFEKSHWIQLPRDVVVGH-GVLDDIGDVCSDLKLTGRALIVTGPTTKKIAGDRVEENLEDA-----G-DVEVVI---VD- 69 (350)
T ss_pred CCCCceEEeCCCeEEECC-CHHHHHHHHHHHhCCCCeEEEEECCcHHHHHHHHHHHHHHhc-----C-CeeEEe---CC-
Confidence 556778877765433 32 34556777777655 58888887654432 22221111 2 221111 00
Q ss_pred CCCCCHHHHHHHHHHhccHHHHHHHHHHhhccCCCceEEEeCCCcc---hHHHHHHHcCCceEEEccchh
Q 044266 74 GDRNDLGMLTKTMVRVMPEKLEELIENINRLENEKITCVVADGSMG---WVMEVAEKMKLRRAAFWPAAA 140 (462)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~---~~~~~A~~lgiP~v~~~~~~~ 140 (462)
+.....+.++++.+++ .+.|+||.=.... .+..+|...|+|++.+-|...
T Consensus 70 --------------~~t~~~v~~~~~~~~~---~~~d~IIaiGGGsv~D~ak~vA~~rgip~I~IPTT~~ 122 (350)
T PRK00843 70 --------------EATMEEVEKVEEKAKD---VNAGFLIGVGGGKVIDVAKLAAYRLGIPFISVPTAAS 122 (350)
T ss_pred --------------CCCHHHHHHHHHHhhc---cCCCEEEEeCCchHHHHHHHHHHhcCCCEEEeCCCcc
Confidence 0122345556666555 6789999554322 455667788999999866543
No 346
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=52.34 E-value=25 Score=31.40 Aligned_cols=44 Identities=9% Similarity=-0.009 Sum_probs=32.3
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhC--CCEEEEEeCCcchHHHHH
Q 044266 6 HVLAFPYPAQGHVIPLLEISQCLVKH--GVKVTFLNTDYNHKRVVN 49 (462)
Q Consensus 6 ~Il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~v~~ 49 (462)
||++--.|+.+=+.-.+.|.+.|.++ ||+|.++.+..-.+.+..
T Consensus 1 ~i~~~itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~~i~~ 46 (234)
T TIGR02700 1 RIGWGITGAGHLLVESFQVMKELKREIEELRVSTFVSRAGEEVVRM 46 (234)
T ss_pred CeEEEEeCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHhHHhh
Confidence 34544444444447899999999999 999999999876665554
No 347
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=52.17 E-value=20 Score=28.53 Aligned_cols=35 Identities=23% Similarity=0.093 Sum_probs=27.6
Q ss_pred cChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh
Q 044266 16 GHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNA 50 (462)
Q Consensus 16 GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 50 (462)
.-+.-.+-|+..|.++||+|++++++.-...++..
T Consensus 11 vq~p~alYl~~~Lk~~G~~v~Va~npAA~kLl~va 45 (139)
T PF09001_consen 11 VQTPSALYLSYKLKKKGFEVVVAGNPAALKLLEVA 45 (139)
T ss_dssp THHHHHHHHHHHHHCTTEEEEEEE-HHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhcCCeEEEecCHHHHhHhhhc
Confidence 44455788899999999999999998877777655
No 348
>PRK09165 replicative DNA helicase; Provisional
Probab=52.12 E-value=66 Score=32.46 Aligned_cols=43 Identities=16% Similarity=0.245 Sum_probs=32.9
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhC---------------CCEEEEEeCCcchHHHHH
Q 044266 7 VLAFPYPAQGHVIPLLEISQCLVKH---------------GVKVTFLNTDYNHKRVVN 49 (462)
Q Consensus 7 Il~~~~~~~GH~~p~l~La~~L~~r---------------Gh~Vt~~~~~~~~~~v~~ 49 (462)
+++...|+.|-..-.+.+|...+.+ |..|.|++..-..+.+..
T Consensus 220 ivIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~ 277 (497)
T PRK09165 220 IILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLAT 277 (497)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHHH
Confidence 5667778889999999998888753 789999998766554433
No 349
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=51.81 E-value=26 Score=29.58 Aligned_cols=42 Identities=12% Similarity=0.111 Sum_probs=30.3
Q ss_pred EEEEEcCCCccChHH-HHHHHHHHH-hCCCEEEEEeCCcchHHHH
Q 044266 6 HVLAFPYPAQGHVIP-LLEISQCLV-KHGVKVTFLNTDYNHKRVV 48 (462)
Q Consensus 6 ~Il~~~~~~~GH~~p-~l~La~~L~-~rGh~Vt~~~~~~~~~~v~ 48 (462)
||++.-.++ ||... ...+.+.|. ++||+|.++.++.-.+.+.
T Consensus 1 ~i~~gitGs-g~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~~vi~ 44 (174)
T TIGR02699 1 RIAWGITGS-GDKLPETYSIMKDVKNRYGDEIDVFLSKAGEQVVK 44 (174)
T ss_pred CEEEEEEcc-HHHHHHHHHHHHHHHHhcCCEEEEEECHhHHHHHH
Confidence 344433344 67755 889999998 4699999999987665554
No 350
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=51.75 E-value=19 Score=32.91 Aligned_cols=53 Identities=15% Similarity=0.236 Sum_probs=36.8
Q ss_pred cccceeccCchhhhhhhh-cCCceeccccccchhhhHHhHhhhheeeEEeecCCCCccCHHHHHHHHHHHhcCH
Q 044266 347 IACFLSHCGWNSTMEGVS-NGVPFLCWPYFADQFLNESYICDIWKVGLRFNKNKNGIITREEIMKKVDQVLEDE 419 (462)
Q Consensus 347 ~~~~I~HgG~~sv~eal~-~GvP~l~~P~~~DQ~~na~~v~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ll~~~ 419 (462)
++++|+=||-||++.+.. +.+|++.+ |.- .+|.- ...+++++.+++++++++.
T Consensus 53 ~D~vi~lGGDGT~L~a~~~~~~PilGI--------N~G------~lGFL------~~~~~~~~~~~l~~i~~g~ 106 (271)
T PRK01185 53 ADVIITIGGDGTILRTLQRAKGPILGI--------NMG------GLGFL------TEIEIDEVGSAIKKLIRGE 106 (271)
T ss_pred CCEEEEEcCcHHHHHHHHHcCCCEEEE--------ECC------CCccC------cccCHHHHHHHHHHHHcCC
Confidence 344999999999999987 45677665 211 12222 2367899999999999754
No 351
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=51.62 E-value=27 Score=28.38 Aligned_cols=35 Identities=11% Similarity=0.159 Sum_probs=26.9
Q ss_pred HHHHHHHhCCCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEc
Q 044266 23 EISQCLVKHGVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSI 66 (462)
Q Consensus 23 ~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i 66 (462)
-+|..|+++||+|++++.....+.+.+. ++.+...
T Consensus 12 ~~a~~L~~~g~~V~l~~r~~~~~~~~~~---------g~~~~~~ 46 (151)
T PF02558_consen 12 LYAARLAQAGHDVTLVSRSPRLEAIKEQ---------GLTITGP 46 (151)
T ss_dssp HHHHHHHHTTCEEEEEESHHHHHHHHHH---------CEEEEET
T ss_pred HHHHHHHHCCCceEEEEccccHHhhhhe---------eEEEEec
Confidence 4688999999999999998844556666 6766553
No 352
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=51.50 E-value=62 Score=26.85 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=19.6
Q ss_pred ceeccCc------hhhhhhhhcCCceeccc
Q 044266 350 FLSHCGW------NSTMEGVSNGVPFLCWP 373 (462)
Q Consensus 350 ~I~HgG~------~sv~eal~~GvP~l~~P 373 (462)
+++|+|- +.+.+|...++|+|++.
T Consensus 63 ~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 92 (162)
T cd07038 63 LVTTYGVGELSALNGIAGAYAEHVPVVHIV 92 (162)
T ss_pred EEEcCCccHHHHHHHHHHHHHcCCCEEEEe
Confidence 7777664 47889999999999995
No 353
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=51.01 E-value=23 Score=35.20 Aligned_cols=40 Identities=20% Similarity=0.279 Sum_probs=33.5
Q ss_pred CCEEEEEcCCCccChHH------------HHHHHHHHHhCCCEEEEEeCCcc
Q 044266 4 RPHVLAFPYPAQGHVIP------------LLEISQCLVKHGVKVTFLNTDYN 43 (462)
Q Consensus 4 ~~~Il~~~~~~~GH~~p------------~l~La~~L~~rGh~Vt~~~~~~~ 43 (462)
..|||+...|++=.+.| -.+||+++..+|++||+++.+..
T Consensus 256 gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~~ 307 (475)
T PRK13982 256 GRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVD 307 (475)
T ss_pred CCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCcC
Confidence 46889888888877776 37899999999999999997653
No 354
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=50.46 E-value=67 Score=28.58 Aligned_cols=100 Identities=15% Similarity=0.192 Sum_probs=54.1
Q ss_pred CCEEEEEcCCCccCh----HHHHHHHHHHHhCCCEEEEEeCCcc--hHHHHHhhcCCCCCCCCeE--EEEcCCCCCCCCC
Q 044266 4 RPHVLAFPYPAQGHV----IPLLEISQCLVKHGVKVTFLNTDYN--HKRVVNALGQNNYIGDQIK--LVSIPDGMEPEGD 75 (462)
Q Consensus 4 ~~~Il~~~~~~~GH~----~p~l~La~~L~~rGh~Vt~~~~~~~--~~~v~~~~~~~~~~~~~i~--~~~i~~~~~~~~~ 75 (462)
+..|++.+..+...- .-+.+|++.|.++|..|.++.++.. .+.+..... ++. +..+..
T Consensus 105 ~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~~~~~~~~~~-------~~~~~~~~~~~------- 170 (247)
T PF01075_consen 105 KPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQEKEIADQIAA-------GLQNPVINLAG------- 170 (247)
T ss_dssp SSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHHHHHHHHHHT-------THTTTTEEETT-------
T ss_pred CCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHHHHHHHHHHHH-------hcccceEeecC-------
Confidence 346777776555222 2268999999999989988888877 233322211 111 111110
Q ss_pred CCCHHHHHHHHHHhccHHHHHHHHHHhhccCCCceEEEeCCCcchHHHHHHHcCCceEEEccch
Q 044266 76 RNDLGMLTKTMVRVMPEKLEELIENINRLENEKITCVVADGSMGWVMEVAEKMKLRRAAFWPAA 139 (462)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~~~~~~A~~lgiP~v~~~~~~ 139 (462)
...+.++...+ ...|++|+.. .....+|..+|+|++.++...
T Consensus 171 ---------------~~~l~e~~ali-----~~a~~~I~~D--tg~~HlA~a~~~p~v~lfg~t 212 (247)
T PF01075_consen 171 ---------------KTSLRELAALI-----SRADLVIGND--TGPMHLAAALGTPTVALFGPT 212 (247)
T ss_dssp ---------------TS-HHHHHHHH-----HTSSEEEEES--SHHHHHHHHTT--EEEEESSS
T ss_pred ---------------CCCHHHHHHHH-----hcCCEEEecC--ChHHHHHHHHhCCEEEEecCC
Confidence 11244444444 4678888653 567899999999999986544
No 355
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=50.26 E-value=48 Score=27.96 Aligned_cols=43 Identities=12% Similarity=0.141 Sum_probs=34.9
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH
Q 044266 7 VLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVN 49 (462)
Q Consensus 7 Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~ 49 (462)
+++...|+.|=..-.+.++...++.|..|.+++.....+.+.+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~ 44 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIE 44 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHH
Confidence 4566677888888899999999999999999998876655544
No 356
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=50.24 E-value=23 Score=32.23 Aligned_cols=53 Identities=11% Similarity=0.164 Sum_probs=35.7
Q ss_pred ccceeccCchhhhhhhhc-----CCceeccccccchhhhHHhHhhhheeeEEeecCCCCccCHHHHHHHHHHHhcCH
Q 044266 348 ACFLSHCGWNSTMEGVSN-----GVPFLCWPYFADQFLNESYICDIWKVGLRFNKNKNGIITREEIMKKVDQVLEDE 419 (462)
Q Consensus 348 ~~~I~HgG~~sv~eal~~-----GvP~l~~P~~~DQ~~na~~v~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ll~~~ 419 (462)
+++|+=||-||++.++.. .+|++.+-.. - .+|.- ...+.+++.++++++++++
T Consensus 41 D~vi~lGGDGT~L~a~~~~~~~~~~pilgIn~~-------G------~lGFL------~~~~~~~~~~~l~~i~~g~ 98 (264)
T PRK03501 41 NIIVSIGGDGTFLQAVRKTGFREDCLYAGISTK-------D------QLGFY------CDFHIDDLDKMIQAITKEE 98 (264)
T ss_pred cEEEEECCcHHHHHHHHHhcccCCCeEEeEecC-------C------CCeEc------ccCCHHHHHHHHHHHHcCC
Confidence 349999999999999874 5676555210 0 12221 2357789999999988654
No 357
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=50.23 E-value=26 Score=31.08 Aligned_cols=36 Identities=17% Similarity=0.156 Sum_probs=26.5
Q ss_pred EEEEEcCCCccChHH------------HHHHHHHHHhCCCEEEEEeCC
Q 044266 6 HVLAFPYPAQGHVIP------------LLEISQCLVKHGVKVTFLNTD 41 (462)
Q Consensus 6 ~Il~~~~~~~GH~~p------------~l~La~~L~~rGh~Vt~~~~~ 41 (462)
|||+...|+.-.+.| -.+||+.|.++||+|+++..+
T Consensus 2 ~vliT~G~T~e~iD~VR~itN~SSG~iG~aLA~~L~~~G~~V~li~r~ 49 (229)
T PRK06732 2 KILITSGGTTEPIDSVRGITNHSTGQLGKIIAETFLAAGHEVTLVTTK 49 (229)
T ss_pred EEEEcCCCcccccCCceeecCccchHHHHHHHHHHHhCCCEEEEEECc
Confidence 666666665555543 367889999999999999754
No 358
>CHL00175 minD septum-site determining protein; Validated
Probab=49.84 E-value=2.1e+02 Score=26.18 Aligned_cols=39 Identities=10% Similarity=0.316 Sum_probs=30.4
Q ss_pred CCEEEEEcC--CCccChHHHHHHHHHHHhCCCEEEEEeCCc
Q 044266 4 RPHVLAFPY--PAQGHVIPLLEISQCLVKHGVKVTFLNTDY 42 (462)
Q Consensus 4 ~~~Il~~~~--~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 42 (462)
++|++.+.. |+-|=..-...||..|+++|++|.++=.+.
T Consensus 14 ~~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D~ 54 (281)
T CHL00175 14 MSRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADI 54 (281)
T ss_pred CceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 456665554 466888899999999999999999885544
No 359
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=49.46 E-value=1.1e+02 Score=29.12 Aligned_cols=88 Identities=17% Similarity=0.252 Sum_probs=52.0
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHhccHHHHHHHH
Q 044266 20 PLLEISQCLVKHGVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIPDGMEPEGDRNDLGMLTKTMVRVMPEKLEELIE 99 (462)
Q Consensus 20 p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 99 (462)
-+.+|++.|.++|++|.+++.+...+..++... .. +...... .. .+.. ...+.++..
T Consensus 201 ~~a~l~~~l~~~~~~vvl~Gg~~e~~~~~~i~~-------~~-----~~~~~~~--------~~-~l~g--~~sL~el~a 257 (348)
T PRK10916 201 HYAELAQQLIDEGYQVVLFGSAKDHEAGNEILA-------AL-----NTEQQAW--------CR-NLAG--ETQLEQAVI 257 (348)
T ss_pred HHHHHHHHHHHCCCeEEEEeCHHhHHHHHHHHH-------hc-----ccccccc--------ee-eccC--CCCHHHHHH
Confidence 478999999888999999888766554443210 00 0000000 00 0000 112444444
Q ss_pred HHhhccCCCceEEEeCCCcchHHHHHHHcCCceEEEcc
Q 044266 100 NINRLENEKITCVVADGSMGWVMEVAEKMKLRRAAFWP 137 (462)
Q Consensus 100 ~l~~~~~~~~Dlvi~D~~~~~~~~~A~~lgiP~v~~~~ 137 (462)
.+ .+-|++|+.. .....+|..+|+|++.++.
T Consensus 258 li-----~~a~l~I~nD--TGp~HlAaA~g~P~valfG 288 (348)
T PRK10916 258 LI-----AACKAIVTND--SGLMHVAAALNRPLVALYG 288 (348)
T ss_pred HH-----HhCCEEEecC--ChHHHHHHHhCCCEEEEEC
Confidence 44 4567888764 5678999999999999764
No 360
>PRK09620 hypothetical protein; Provisional
Probab=49.41 E-value=36 Score=30.25 Aligned_cols=39 Identities=18% Similarity=0.103 Sum_probs=28.4
Q ss_pred CCCEEEEEcCCCccChHH------------HHHHHHHHHhCCCEEEEEeCC
Q 044266 3 RRPHVLAFPYPAQGHVIP------------LLEISQCLVKHGVKVTFLNTD 41 (462)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p------------~l~La~~L~~rGh~Vt~~~~~ 41 (462)
+..||++...|+.=.+.| -..||++|.++|++|+++...
T Consensus 2 ~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 2 KGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred CCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 345777776665444333 367899999999999999765
No 361
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=49.38 E-value=1.9e+02 Score=28.05 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=33.0
Q ss_pred CEE-EEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchH
Q 044266 5 PHV-LAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHK 45 (462)
Q Consensus 5 ~~I-l~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 45 (462)
.+| +++...+.|-..-+..||..+..+|+.|.+++.+.++.
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~ 247 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRS 247 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCc
Confidence 344 45555577888899999999999999999999987754
No 362
>PLN02470 acetolactate synthase
Probab=49.25 E-value=55 Score=33.82 Aligned_cols=80 Identities=13% Similarity=0.106 Sum_probs=45.6
Q ss_pred HHHHHHHHHhCCCCEEEEEcCCCCCcccccCchhHHHHhcCCceeecccC-cccc-------cCCCCcccceeccCch--
Q 044266 288 FQELASGLELTNRPFLWVVRPDITNDAIDAYPEGFQDRVATRRQMVGWAP-QQKV-------LTHPSIACFLSHCGWN-- 357 (462)
Q Consensus 288 ~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-q~~l-------l~~~~~~~~I~HgG~~-- 357 (462)
.+.+++.|+..|.+.|+-+.+. ...++-+.+.+ .++++.+.--. +.+. ..+..++++++|.|-|
T Consensus 16 a~~l~~~L~~~GV~~vFg~pG~----~~~~l~dal~~--~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~ 89 (585)
T PLN02470 16 ADILVEALEREGVDTVFAYPGG----ASMEIHQALTR--SNCIRNVLCRHEQGEVFAAEGYAKASGKVGVCIATSGPGAT 89 (585)
T ss_pred HHHHHHHHHHcCCCEEEEcCCc----ccHHHHHHHhc--cCCceEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCccHH
Confidence 5667788888888888776655 12222222210 11233321111 1111 1123345588998854
Q ss_pred ----hhhhhhhcCCceeccc
Q 044266 358 ----STMEGVSNGVPFLCWP 373 (462)
Q Consensus 358 ----sv~eal~~GvP~l~~P 373 (462)
.+.+|...++|||++.
T Consensus 90 N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 90 NLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred HHHHHHHHHHhcCCcEEEEe
Confidence 7899999999999994
No 363
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=49.02 E-value=27 Score=32.41 Aligned_cols=32 Identities=19% Similarity=0.172 Sum_probs=25.6
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCC
Q 044266 5 PHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTD 41 (462)
Q Consensus 5 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 41 (462)
+||+++-.|..| ..+|..|++.||+|+++...
T Consensus 1 m~I~IiG~G~~G-----~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 1 MKIAILGAGAIG-----GLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCeEEEEECC
Confidence 378888777766 45788899999999999873
No 364
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=48.98 E-value=27 Score=29.55 Aligned_cols=45 Identities=13% Similarity=0.263 Sum_probs=34.9
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHH
Q 044266 4 RPHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVV 48 (462)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~ 48 (462)
+..++++..++.|-..=..++++++.++|+.|.|++.+...+.+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~ 91 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELK 91 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecccc
Confidence 457888888888888889999999999999999999876665554
No 365
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=48.96 E-value=29 Score=33.60 Aligned_cols=46 Identities=17% Similarity=0.182 Sum_probs=35.7
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh
Q 044266 4 RPHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNA 50 (462)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 50 (462)
+.||++.-.|+.|= +-...+.+.|.+.|++|.++.++.-.+.+...
T Consensus 3 ~k~IllgiTGSiaa-~~~~~ll~~L~~~g~~V~vv~T~~A~~fv~~~ 48 (390)
T TIGR00521 3 NKKILLGVTGGIAA-YKTVELVRELVRQGAEVKVIMTEAAKKFITPL 48 (390)
T ss_pred CCEEEEEEeCHHHH-HHHHHHHHHHHhCCCEEEEEECHhHHHHHHHH
Confidence 46888776665554 55899999999999999999998776666543
No 366
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=48.95 E-value=1.5e+02 Score=29.54 Aligned_cols=43 Identities=21% Similarity=0.295 Sum_probs=34.5
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHH
Q 044266 6 HVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVV 48 (462)
Q Consensus 6 ~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~ 48 (462)
-+++...|+.|--.-++.++..++++|+.|.+++.....+.+.
T Consensus 96 vilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~ 138 (454)
T TIGR00416 96 LILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIK 138 (454)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHH
Confidence 3556667788999999999999999999999999876655443
No 367
>PHA02754 hypothetical protein; Provisional
Probab=48.86 E-value=28 Score=22.79 Aligned_cols=26 Identities=15% Similarity=0.383 Sum_probs=20.8
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhH
Q 044266 410 KKVDQVLEDENFKARALDLKETSLNS 435 (462)
Q Consensus 410 ~~i~~ll~~~~~~~~a~~l~~~~~~~ 435 (462)
+.|.+++.+++|++..++++.++..+
T Consensus 5 eEi~k~i~eK~Fke~MRelkD~LSe~ 30 (67)
T PHA02754 5 EEIPKAIMEKDFKEAMRELKDILSEA 30 (67)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhC
Confidence 34556677899999999999998864
No 368
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=48.73 E-value=67 Score=26.68 Aligned_cols=33 Identities=24% Similarity=0.301 Sum_probs=27.4
Q ss_pred cCCCccChHHHHHHHHHHHhCCCEEEEEeCCcc
Q 044266 11 PYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYN 43 (462)
Q Consensus 11 ~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 43 (462)
+-|+.|--.-...||..|++.|++|.++=.+..
T Consensus 7 ~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q 39 (169)
T cd02037 7 GKGGVGKSTVAVNLALALAKLGYKVGLLDADIY 39 (169)
T ss_pred CCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 345668888899999999999999999876543
No 369
>PLN02929 NADH kinase
Probab=48.61 E-value=21 Score=33.00 Aligned_cols=65 Identities=15% Similarity=0.189 Sum_probs=42.0
Q ss_pred cccceeccCchhhhhhhh---cCCceecccccc------chhhhHHhHhhhheeeEEeecCCCCccCHHHHHHHHHHHhc
Q 044266 347 IACFLSHCGWNSTMEGVS---NGVPFLCWPYFA------DQFLNESYICDIWKVGLRFNKNKNGIITREEIMKKVDQVLE 417 (462)
Q Consensus 347 ~~~~I~HgG~~sv~eal~---~GvP~l~~P~~~------DQ~~na~~v~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ll~ 417 (462)
++++|+-||-||++.+.+ .++|++.+=... ++..|.-- +.+ -+|.... .+.+++.++++++++
T Consensus 65 ~Dlvi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~-~~r-~lGfL~~------~~~~~~~~~L~~il~ 136 (301)
T PLN02929 65 VDLVVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFD-ARR-STGHLCA------ATAEDFEQVLDDVLF 136 (301)
T ss_pred CCEEEEECCcHHHHHHHHHcCCCCcEEEEECCCcccccccccccccc-ccc-Ccccccc------CCHHHHHHHHHHHHc
Confidence 344999999999999855 478988874431 12222211 111 2454442 578999999999997
Q ss_pred CH
Q 044266 418 DE 419 (462)
Q Consensus 418 ~~ 419 (462)
+.
T Consensus 137 g~ 138 (301)
T PLN02929 137 GR 138 (301)
T ss_pred CC
Confidence 54
No 370
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=48.60 E-value=23 Score=32.05 Aligned_cols=53 Identities=15% Similarity=0.241 Sum_probs=36.4
Q ss_pred cccceeccCchhhhhhhh-cCCceeccccccchhhhHHhHhhhheeeEEeecCCCCccCHHHHHHHHHHHhcCH
Q 044266 347 IACFLSHCGWNSTMEGVS-NGVPFLCWPYFADQFLNESYICDIWKVGLRFNKNKNGIITREEIMKKVDQVLEDE 419 (462)
Q Consensus 347 ~~~~I~HgG~~sv~eal~-~GvP~l~~P~~~DQ~~na~~v~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ll~~~ 419 (462)
++++|+=||-||++.|+. +++|++.+ |.- .+|.-. .++.+++.++++++++..
T Consensus 42 ~d~vi~iGGDGT~L~a~~~~~~Pilgi--------n~G------~lGfl~------~~~~~~~~~~l~~~~~g~ 95 (256)
T PRK14075 42 ADLIIVVGGDGTVLKAAKKVGTPLVGF--------KAG------RLGFLS------SYTLEEIDRFLEDLKNWN 95 (256)
T ss_pred CCEEEEECCcHHHHHHHHHcCCCEEEE--------eCC------CCcccc------ccCHHHHHHHHHHHHcCC
Confidence 344999999999999977 57887766 211 122222 357788888888887643
No 371
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=48.40 E-value=1.1e+02 Score=29.66 Aligned_cols=104 Identities=22% Similarity=0.319 Sum_probs=66.9
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcCCCCCCCCCCCCHHHHHH
Q 044266 5 PHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIPDGMEPEGDRNDLGMLTK 84 (462)
Q Consensus 5 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~ 84 (462)
.=||+---|+-|--.=+++++..|+++| .|.+++.......++-... .+.. +. .+ +.
T Consensus 94 s~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~QiklRA~-------RL~~---~~--------~~----l~ 150 (456)
T COG1066 94 SVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIKLRAD-------RLGL---PT--------NN----LY 150 (456)
T ss_pred cEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHHHHHHH-------HhCC---Cc--------cc----eE
Confidence 3466666788898899999999999999 9999999887654432210 1110 00 00 00
Q ss_pred HHHHhccHHHHHHHHHHhhccCCCceEEEeCCCcc-h--------------------HHHHHHHcCCceEEEcc
Q 044266 85 TMVRVMPEKLEELIENINRLENEKITCVVADGSMG-W--------------------VMEVAEKMKLRRAAFWP 137 (462)
Q Consensus 85 ~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~-~--------------------~~~~A~~lgiP~v~~~~ 137 (462)
. ..+-.++++++.+.. .+||++|.|.... + ...+|+..||+.+.+.+
T Consensus 151 l---~aEt~~e~I~~~l~~---~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVGH 218 (456)
T COG1066 151 L---LAETNLEDIIAELEQ---EKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVGH 218 (456)
T ss_pred E---ehhcCHHHHHHHHHh---cCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEEE
Confidence 1 112235566666666 9999999997432 1 23568888898887654
No 372
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=48.23 E-value=88 Score=30.92 Aligned_cols=33 Identities=9% Similarity=0.103 Sum_probs=26.1
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCC
Q 044266 4 RPHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTD 41 (462)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 41 (462)
++|||++..+++.| +|++.|.+.|++|.++...
T Consensus 2 ~~kVLvlG~G~re~-----al~~~l~~~g~~v~~~~~~ 34 (435)
T PRK06395 2 TMKVMLVGSGGRED-----AIARAIKRSGAILFSVIGH 34 (435)
T ss_pred ceEEEEECCcHHHH-----HHHHHHHhCCCeEEEEECC
Confidence 56999988888776 5788888889888888553
No 373
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=47.92 E-value=41 Score=31.49 Aligned_cols=34 Identities=15% Similarity=0.260 Sum_probs=29.3
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcc
Q 044266 5 PHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYN 43 (462)
Q Consensus 5 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 43 (462)
++|.++-.|++| -+||+.|++.||+|++......
T Consensus 2 ~kI~ViGaGswG-----TALA~~la~ng~~V~lw~r~~~ 35 (329)
T COG0240 2 MKIAVIGAGSWG-----TALAKVLARNGHEVRLWGRDEE 35 (329)
T ss_pred ceEEEEcCChHH-----HHHHHHHHhcCCeeEEEecCHH
Confidence 588888888888 5799999999999999997653
No 374
>PRK08840 replicative DNA helicase; Provisional
Probab=47.63 E-value=1.3e+02 Score=30.04 Aligned_cols=41 Identities=7% Similarity=0.216 Sum_probs=32.8
Q ss_pred EEEEcCCCccChHHHHHHHHHHH-hCCCEEEEEeCCcchHHH
Q 044266 7 VLAFPYPAQGHVIPLLEISQCLV-KHGVKVTFLNTDYNHKRV 47 (462)
Q Consensus 7 Il~~~~~~~GH~~p~l~La~~L~-~rGh~Vt~~~~~~~~~~v 47 (462)
|++-.-|+.|-..-.+.+|...+ +.|+.|.|++..-..+.+
T Consensus 220 iviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs~~ql 261 (464)
T PRK08840 220 IIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMPAEQL 261 (464)
T ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCCHHHH
Confidence 45677789999999999999987 469999999987655444
No 375
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=47.53 E-value=2e+02 Score=28.63 Aligned_cols=104 Identities=12% Similarity=0.108 Sum_probs=59.8
Q ss_pred EEEE-cCCCccChHHHHHHHHHHHhCCCEEEEEeCCcc-hH-H-HHHhhcCCCCCCCCeEEEEcCCCCCCCCCCCCHHHH
Q 044266 7 VLAF-PYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYN-HK-R-VVNALGQNNYIGDQIKLVSIPDGMEPEGDRNDLGML 82 (462)
Q Consensus 7 Il~~-~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~-~~-~-v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~ 82 (462)
|++. |....|-..-...|++.|+++|++|..+=+... .+ . .... .+. +... . +.
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~g~d~~D~~~~~~~--------~g~---------~~~~-l-d~--- 59 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFKVGPDYIDPMFHTQA--------TGR---------PSRN-L-DS--- 59 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEccCCCCCCHHHHHHH--------hCC---------chhh-C-Cc---
Confidence 4444 333458888999999999999999998865321 00 0 0000 011 0000 0 00
Q ss_pred HHHHHHhccHHHHHHHHHHhhccCCCceEEEeCCC-------c-----chHHHHHHHcCCceEEEccchh
Q 044266 83 TKTMVRVMPEKLEELIENINRLENEKITCVVADGS-------M-----GWVMEVAEKMKLRRAAFWPAAA 140 (462)
Q Consensus 83 ~~~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~-------~-----~~~~~~A~~lgiP~v~~~~~~~ 140 (462)
+. .....+.+.+..+. .+.|++|++.. . .....+|+.++.|++.+.....
T Consensus 60 ---~~-~~~~~i~~~~~~~~----~~~D~viVEGagGl~~g~~p~~~~~s~adlAk~l~~pVILV~~~~~ 121 (449)
T TIGR00379 60 ---FF-MSEAQIQECFHRHS----KGTDYSIIEGVRGLYDGISAITDYGSTASVAKALDAPIVLVMNCQR 121 (449)
T ss_pred ---cc-CCHHHHHHHHHHhc----ccCCEEEEecCCccccCCCCCCCCccHHHHHHHhCCCEEEEECCch
Confidence 00 01223444444332 57899997754 1 2477999999999999987653
No 376
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=47.40 E-value=30 Score=29.34 Aligned_cols=30 Identities=13% Similarity=0.095 Sum_probs=22.2
Q ss_pred CCceEEEeCCCcch--HHHHHHHcCCceEEEc
Q 044266 107 EKITCVVADGSMGW--VMEVAEKMKLRRAAFW 136 (462)
Q Consensus 107 ~~~Dlvi~D~~~~~--~~~~A~~lgiP~v~~~ 136 (462)
.+||+||....... ....-++.|||++.+.
T Consensus 68 l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 68 LKPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred cCCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 79999998754432 4455678999998875
No 377
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=47.27 E-value=27 Score=34.75 Aligned_cols=53 Identities=13% Similarity=0.183 Sum_probs=38.2
Q ss_pred cccceeccCchhhhhhhhc----CCceeccccccchhhhHHhHhhhheeeEEeecCCCCccCHHHHHHHHHHHhcCH
Q 044266 347 IACFLSHCGWNSTMEGVSN----GVPFLCWPYFADQFLNESYICDIWKVGLRFNKNKNGIITREEIMKKVDQVLEDE 419 (462)
Q Consensus 347 ~~~~I~HgG~~sv~eal~~----GvP~l~~P~~~DQ~~na~~v~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ll~~~ 419 (462)
++++|+=||-||++.|... ++|++.+ |.- .+|.. ..++++++.++|.++++++
T Consensus 263 ~DlVIsiGGDGTlL~Aar~~~~~~iPILGI--------N~G------~LGFL------t~i~~~e~~~~Le~il~G~ 319 (508)
T PLN02935 263 VDLVITLGGDGTVLWAASMFKGPVPPVVPF--------SMG------SLGFM------TPFHSEQYRDCLDAILKGP 319 (508)
T ss_pred CCEEEEECCcHHHHHHHHHhccCCCcEEEE--------eCC------Cccee------cccCHHHHHHHHHHHHcCC
Confidence 4459999999999999764 5677766 211 24432 2368899999999999765
No 378
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=46.98 E-value=22 Score=32.62 Aligned_cols=53 Identities=15% Similarity=0.213 Sum_probs=35.0
Q ss_pred cccceeccCchhhhhhhh---cCCceeccccccchhhhHHhHhhhheeeEEeecCCCCccCHHHHHHHHHHHhcCH
Q 044266 347 IACFLSHCGWNSTMEGVS---NGVPFLCWPYFADQFLNESYICDIWKVGLRFNKNKNGIITREEIMKKVDQVLEDE 419 (462)
Q Consensus 347 ~~~~I~HgG~~sv~eal~---~GvP~l~~P~~~DQ~~na~~v~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ll~~~ 419 (462)
++++|.-||-||+++++. .++|++.++... + |.- ..++++++.+++.+++++.
T Consensus 58 ~d~vi~iGGDGTlL~a~~~~~~~~pi~gIn~G~------------l--GFl------~~~~~~~~~~~l~~i~~g~ 113 (277)
T PRK03708 58 VDFIIAIGGDGTILRIEHKTKKDIPILGINMGT------------L--GFL------TEVEPEETFFALSRLLEGD 113 (277)
T ss_pred CCEEEEEeCcHHHHHHHHhcCCCCeEEEEeCCC------------C--Ccc------ccCCHHHHHHHHHHHHcCC
Confidence 345999999999999984 356777775321 1 111 2245777888888887543
No 379
>PRK10490 sensor protein KdpD; Provisional
Probab=46.87 E-value=89 Score=34.25 Aligned_cols=39 Identities=15% Similarity=0.173 Sum_probs=34.3
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCc
Q 044266 4 RPHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDY 42 (462)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 42 (462)
+.||.+=..|+.|-.+.|+.-|++|.++|++|.+---..
T Consensus 24 ~l~i~~g~~~gvgkt~~ml~~a~~~~~~g~dvv~g~~e~ 62 (895)
T PRK10490 24 KLKIFFGACAGVGKTYAMLQEAQRLRAQGLDVLVGVVET 62 (895)
T ss_pred cEEEEeecCCCCCHHHHHHHHHHHHHhCCCcEEEEEeeC
Confidence 468999999999999999999999999999998766543
No 380
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=46.77 E-value=88 Score=30.67 Aligned_cols=41 Identities=15% Similarity=0.212 Sum_probs=33.0
Q ss_pred EEEEcCCCccChHHHHHHHHHH-HhCCCEEEEEeCCcchHHH
Q 044266 7 VLAFPYPAQGHVIPLLEISQCL-VKHGVKVTFLNTDYNHKRV 47 (462)
Q Consensus 7 Il~~~~~~~GH~~p~l~La~~L-~~rGh~Vt~~~~~~~~~~v 47 (462)
|+++-.++.|-..-+..||..+ ..+|+.|.+++.+.++...
T Consensus 226 i~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA 267 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAA 267 (432)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhH
Confidence 5566667779999999999876 6789999999998865543
No 381
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=46.50 E-value=1.8e+02 Score=28.39 Aligned_cols=26 Identities=23% Similarity=0.166 Sum_probs=21.5
Q ss_pred CCceEEEeCCCcchHHHHHHHcCCceEEE
Q 044266 107 EKITCVVADGSMGWVMEVAEKMKLRRAAF 135 (462)
Q Consensus 107 ~~~Dlvi~D~~~~~~~~~A~~lgiP~v~~ 135 (462)
.+||++|.+. ....+|+++|+|++..
T Consensus 355 ~~pDl~ig~s---~~~~~a~~~gip~~~~ 380 (410)
T cd01968 355 KKADLLVAGG---KERYLALKLGIPFCDI 380 (410)
T ss_pred cCCCEEEECC---cchhhHHhcCCCEEEc
Confidence 8999999983 3457899999999854
No 382
>COG2210 Peroxiredoxin family protein [General function prediction only]
Probab=46.46 E-value=42 Score=26.84 Aligned_cols=41 Identities=15% Similarity=0.074 Sum_probs=32.6
Q ss_pred EEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH
Q 044266 9 AFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVN 49 (462)
Q Consensus 9 ~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~ 49 (462)
++.++..--++|..-++...+..|++|+++.+.--...+.+
T Consensus 8 Il~SG~~dk~~~a~iias~A~A~G~EV~VF~TfwGL~~l~K 48 (137)
T COG2210 8 ILASGTLDKAYAALIIASGAAAMGYEVTVFFTFWGLMALRK 48 (137)
T ss_pred EEeCCCHHHHHHHHHHHHHHHHcCCeEEEEEeHHHHHHhhc
Confidence 44457788899999999999999999999999544444444
No 383
>PLN02939 transferase, transferring glycosyl groups
Probab=46.44 E-value=38 Score=36.75 Aligned_cols=40 Identities=18% Similarity=0.234 Sum_probs=30.8
Q ss_pred CCCEEEEEcCC------CccChHHHHHHHHHHHhCCCEEEEEeCCc
Q 044266 3 RRPHVLAFPYP------AQGHVIPLLEISQCLVKHGVKVTFLNTDY 42 (462)
Q Consensus 3 ~~~~Il~~~~~------~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 42 (462)
.++||+|++.- ..|=-.-.-.|.++|++.||+|.++++..
T Consensus 480 ~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y 525 (977)
T PLN02939 480 SGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKY 525 (977)
T ss_pred CCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 36899998732 23444456789999999999999999965
No 384
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=46.42 E-value=2.1e+02 Score=25.22 Aligned_cols=95 Identities=13% Similarity=0.180 Sum_probs=55.1
Q ss_pred CCCccChHHHHHHHHHHHhCCCEEEEEeCCcch-HHHHHhhc-CCC----CCCCCeEEEEcCCCCCCCCCCCCHHHHHHH
Q 044266 12 YPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNH-KRVVNALG-QNN----YIGDQIKLVSIPDGMEPEGDRNDLGMLTKT 85 (462)
Q Consensus 12 ~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~-~~v~~~~~-~~~----~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~ 85 (462)
--+.|--.=+..++..+...||.|+++++.... +.+..... ++. -....+.|.++.-+ + ...
T Consensus 36 d~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~-~-----------~~~ 103 (235)
T COG2874 36 DNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLE-P-----------VNW 103 (235)
T ss_pred CCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEeccc-c-----------ccc
Confidence 335577777888999999999999999998753 33333211 110 00112333332111 0 001
Q ss_pred HHHhccHHHHHHHHHHhhccCCCceEEEeCCCcchH
Q 044266 86 MVRVMPEKLEELIENINRLENEKITCVVADGSMGWV 121 (462)
Q Consensus 86 ~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~~~ 121 (462)
-.+..+..++.+++.++. ++.|++|.|.+...+
T Consensus 104 ~~~~~~~~L~~l~~~~k~---~~~dViIIDSls~~~ 136 (235)
T COG2874 104 GRRSARKLLDLLLEFIKR---WEKDVIIIDSLSAFA 136 (235)
T ss_pred ChHHHHHHHHHHHhhHHh---hcCCEEEEecccHHh
Confidence 112334456666666666 999999999877643
No 385
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=46.41 E-value=40 Score=31.27 Aligned_cols=43 Identities=16% Similarity=0.188 Sum_probs=34.0
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcc
Q 044266 1 MLRRPHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYN 43 (462)
Q Consensus 1 ~~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 43 (462)
|.++.+|.|..=|+.|-..-...||..|++.|++|.++-.+..
T Consensus 1 ~~~~~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~q 43 (295)
T PRK13234 1 MSKLRQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDPK 43 (295)
T ss_pred CCcceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEecccc
Confidence 4445455676667779999999999999999999999965443
No 386
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A.
Probab=46.40 E-value=2.1e+02 Score=27.38 Aligned_cols=126 Identities=13% Similarity=0.186 Sum_probs=57.2
Q ss_pred EEEEEcCCCccChHHHHHHHHHHH-hCCCEEEEEeCCc-chHHHHHhhcCCCCCCCCeEEEEcC-CCCCCCC------CC
Q 044266 6 HVLAFPYPAQGHVIPLLEISQCLV-KHGVKVTFLNTDY-NHKRVVNALGQNNYIGDQIKLVSIP-DGMEPEG------DR 76 (462)
Q Consensus 6 ~Il~~~~~~~GH~~p~l~La~~L~-~rGh~Vt~~~~~~-~~~~v~~~~~~~~~~~~~i~~~~i~-~~~~~~~------~~ 76 (462)
+|-.+-.-..|+..-+...|+.|. +.|.++.|-+..+ .++.+....+.. .++-|++.. +|++... ..
T Consensus 41 ~le~v~~Dp~Sd~~~ya~~A~~Li~~d~V~~ifGc~TSasRKaVlPvvE~~----~~LL~Yp~~YEG~E~S~nviYtGa~ 116 (363)
T PF13433_consen 41 QLEPVIYDPASDPSTYAEKAEKLIREDGVRAIFGCYTSASRKAVLPVVERH----NALLFYPTQYEGFECSPNVIYTGAA 116 (363)
T ss_dssp --EEEEE--TT-HHHHHHHHHHHHHHS---EEEE--SHHHHHHHHHHHHHC----T-EEEE-S--------TTEEE-S--
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHhCCccEEEecchhhhHHHHHHHHHhc----CceEEeccccccccCCCceEEcCCC
Confidence 555666678899999999999996 4888888888655 333333322111 367776654 3332221 11
Q ss_pred --CCH-----------------------------HHHHHHHHHhc-------------cHHHHHHHHHHhhccCCCceEE
Q 044266 77 --NDL-----------------------------GMLTKTMVRVM-------------PEKLEELIENINRLENEKITCV 112 (462)
Q Consensus 77 --~~~-----------------------------~~~~~~~~~~~-------------~~~~~~l~~~l~~~~~~~~Dlv 112 (462)
... .+.++.++... ...+..+++.++. .+||+|
T Consensus 117 PNQ~~~pl~~~~~~~~G~~r~~lvGSdYv~pre~Nri~r~~l~~~GgevvgE~Y~plg~td~~~ii~~I~~---~~Pd~V 193 (363)
T PF13433_consen 117 PNQQLLPLIDYLLENFGAKRFYLVGSDYVYPRESNRIIRDLLEARGGEVVGERYLPLGATDFDPIIAEIKA---AKPDFV 193 (363)
T ss_dssp GGGTHHHHHHHHHHHS--SEEEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEEEE-S-HHHHHHHHHHHHH---HT-SEE
T ss_pred chhhHHHHHHHHHhccCCceEEEecCCccchHHHHHHHHHHHHHcCCEEEEEEEecCCchhHHHHHHHHHh---hCCCEE
Confidence 111 12223332221 4568888888888 899999
Q ss_pred EeCCCcchHHHHHHHc--------CCceEEEccc
Q 044266 113 VADGSMGWVMEVAEKM--------KLRRAAFWPA 138 (462)
Q Consensus 113 i~D~~~~~~~~~A~~l--------giP~v~~~~~ 138 (462)
+.....-.....-+.+ .+|++.++.+
T Consensus 194 ~stlvG~s~~aF~r~~~~aG~~~~~~Pi~S~~~~ 227 (363)
T PF13433_consen 194 FSTLVGDSNVAFYRAYAAAGLDPERIPIASLSTS 227 (363)
T ss_dssp EEE--TTCHHHHHHHHHHHH-SSS---EEESS--
T ss_pred EEeCcCCcHHHHHHHHHHcCCCcccCeEEEEecC
Confidence 9875444433332222 3777776543
No 387
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=46.40 E-value=37 Score=28.04 Aligned_cols=34 Identities=15% Similarity=0.085 Sum_probs=25.6
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCc
Q 044266 4 RPHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDY 42 (462)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 42 (462)
..+|+++..|..| ...++.|.+.||+|+++++..
T Consensus 13 ~~~vlVvGGG~va-----~rka~~Ll~~ga~V~VIsp~~ 46 (157)
T PRK06719 13 NKVVVIIGGGKIA-----YRKASGLKDTGAFVTVVSPEI 46 (157)
T ss_pred CCEEEEECCCHHH-----HHHHHHHHhCCCEEEEEcCcc
Confidence 4578877655433 678899999999999996543
No 388
>KOG1509 consensus Predicted nucleic acid-binding protein ASMTL [Cell cycle control, cell division, chromosome partitioning]
Probab=45.50 E-value=67 Score=27.42 Aligned_cols=77 Identities=16% Similarity=0.219 Sum_probs=49.9
Q ss_pred hCCCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHhccHHHHHHHHHHhhccCCCc
Q 044266 30 KHGVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIPDGMEPEGDRNDLGMLTKTMVRVMPEKLEELIENINRLENEKI 109 (462)
Q Consensus 30 ~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 109 (462)
..|+++++.+.+.-++.+.+. -|+.+...+..++......++....+...........++++.+.+.-+..|
T Consensus 7 ~~~~riiL~S~s~rrk~i~~~--------~G~~~~~~~S~feEnl~k~~~~~p~~yv~~tA~~KA~~I~erL~~~Ed~~~ 78 (209)
T KOG1509|consen 7 LKGKRIILASASPRRKQILAE--------MGLNLEVVVSTFEENLIKSSFETPEDYVVETAKQKAEEIIERLGDGEDSFP 78 (209)
T ss_pred hcCcEEEEecCCchHHHHHHH--------cCCceEEEeccchhhchhhccCCHHHHHHHHHHHHHHHHHHHhhccccCCc
Confidence 378999999988877666555 278888877766665444444445555556666777888888875321335
Q ss_pred eEEEe
Q 044266 110 TCVVA 114 (462)
Q Consensus 110 Dlvi~ 114 (462)
|.+++
T Consensus 79 ~~vi~ 83 (209)
T KOG1509|consen 79 DVVIS 83 (209)
T ss_pred ccccc
Confidence 55553
No 389
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=45.36 E-value=2.1e+02 Score=24.97 Aligned_cols=101 Identities=12% Similarity=0.163 Sum_probs=51.3
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhC--CCEEEEEeCC-cch---HHHHHhhcCCCCCCCCeEEEEcCCCCCCCCCCCCH
Q 044266 6 HVLAFPYPAQGHVIPLLEISQCLVKH--GVKVTFLNTD-YNH---KRVVNALGQNNYIGDQIKLVSIPDGMEPEGDRNDL 79 (462)
Q Consensus 6 ~Il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~-~~~---~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~ 79 (462)
||+++.++..+-+..++ +...+. ..+|.++.+. ... +..++. |+.+..++..-...
T Consensus 1 ki~vl~Sg~Gsn~~al~---~~~~~~~l~~~i~~visn~~~~~~~~~A~~~---------gIp~~~~~~~~~~~------ 62 (207)
T PLN02331 1 KLAVFVSGGGSNFRAIH---DACLDGRVNGDVVVVVTNKPGCGGAEYAREN---------GIPVLVYPKTKGEP------ 62 (207)
T ss_pred CEEEEEeCCChhHHHHH---HHHHcCCCCeEEEEEEEeCCCChHHHHHHHh---------CCCEEEeccccCCC------
Confidence 47777777777666543 444333 2455555444 333 334444 78776654321000
Q ss_pred HHHHHHHHHhccHHHHHHHHHHhhccCCCceEEEeCCCcc-hHHHHHHHcCCceEEEcc
Q 044266 80 GMLTKTMVRVMPEKLEELIENINRLENEKITCVVADGSMG-WVMEVAEKMKLRRAAFWP 137 (462)
Q Consensus 80 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~-~~~~~A~~lgiP~v~~~~ 137 (462)
.+.... ++++.+++ .++|++|+-.+.. ....+-+.+...++-+++
T Consensus 63 -------~~~~~~---~~~~~l~~---~~~Dliv~agy~~il~~~~l~~~~~~~iNiHp 108 (207)
T PLN02331 63 -------DGLSPD---ELVDALRG---AGVDFVLLAGYLKLIPVELVRAYPRSILNIHP 108 (207)
T ss_pred -------cccchH---HHHHHHHh---cCCCEEEEeCcchhCCHHHHhhCCCCEEEEeC
Confidence 001112 23333444 8999999875543 444455555555555544
No 390
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=45.23 E-value=1.2e+02 Score=29.88 Aligned_cols=42 Identities=17% Similarity=0.328 Sum_probs=33.6
Q ss_pred EEEEcCCCccChHHHHHHHHHHHh-CCCEEEEEeCCcchHHHH
Q 044266 7 VLAFPYPAQGHVIPLLEISQCLVK-HGVKVTFLNTDYNHKRVV 48 (462)
Q Consensus 7 Il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~~~~~v~ 48 (462)
+++...|+.|=..-.+.+|..++. .|+.|.|++..-..+.+.
T Consensus 198 ~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i~ 240 (434)
T TIGR00665 198 IILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQLA 240 (434)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHHH
Confidence 456677888999999999999875 699999999887655443
No 391
>PRK05636 replicative DNA helicase; Provisional
Probab=45.22 E-value=51 Score=33.24 Aligned_cols=40 Identities=13% Similarity=0.253 Sum_probs=30.8
Q ss_pred EEEEcCCCccChHHHHHHHHHHH-hCCCEEEEEeCCcchHH
Q 044266 7 VLAFPYPAQGHVIPLLEISQCLV-KHGVKVTFLNTDYNHKR 46 (462)
Q Consensus 7 Il~~~~~~~GH~~p~l~La~~L~-~rGh~Vt~~~~~~~~~~ 46 (462)
|++...|+.|-..-.+.+|...+ +.|..|.|++..-..+.
T Consensus 268 iiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~q 308 (505)
T PRK05636 268 IIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSE 308 (505)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHH
Confidence 45667788899988999998876 56889999987665443
No 392
>PRK07773 replicative DNA helicase; Validated
Probab=45.00 E-value=1e+02 Score=33.81 Aligned_cols=43 Identities=14% Similarity=0.281 Sum_probs=34.1
Q ss_pred EEEEcCCCccChHHHHHHHHHHHh-CCCEEEEEeCCcchHHHHH
Q 044266 7 VLAFPYPAQGHVIPLLEISQCLVK-HGVKVTFLNTDYNHKRVVN 49 (462)
Q Consensus 7 Il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~~~~~v~~ 49 (462)
|++..-|+.|-..-.+.+|...+. .|..|.|++-.-..+.+..
T Consensus 220 ivIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql~~ 263 (886)
T PRK07773 220 IIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQLVM 263 (886)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHH
Confidence 567778899999999999999875 5889999998766554433
No 393
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=44.93 E-value=4.2e+02 Score=28.34 Aligned_cols=40 Identities=15% Similarity=0.301 Sum_probs=31.2
Q ss_pred CCEEEEEcCC--CccChHHHHHHHHHHHhCCCEEEEEeCCcc
Q 044266 4 RPHVLAFPYP--AQGHVIPLLEISQCLVKHGVKVTFLNTDYN 43 (462)
Q Consensus 4 ~~~Il~~~~~--~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 43 (462)
+.|+++++.. +-|--.-...||..|+..|+.|.++-.+..
T Consensus 530 ~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D~r 571 (726)
T PRK09841 530 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLR 571 (726)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 4577766654 557788899999999999999999976543
No 394
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=44.93 E-value=45 Score=27.57 Aligned_cols=29 Identities=17% Similarity=0.204 Sum_probs=23.9
Q ss_pred EEEEeccCccccCHHHHHHHHHHHHhCCC
Q 044266 272 VIYVAFGSFTVFDKEQFQELASGLELTNR 300 (462)
Q Consensus 272 ~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~ 300 (462)
.+|+++||........++..+.++...+.
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~ 31 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALAD 31 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCC
Confidence 79999999877777778888888877664
No 395
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=44.84 E-value=55 Score=25.37 Aligned_cols=43 Identities=23% Similarity=0.207 Sum_probs=35.2
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH
Q 044266 7 VLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVN 49 (462)
Q Consensus 7 Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~ 49 (462)
++..+.++-.|-....-++..|.++|++|.++......+.+.+
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~~~ 44 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEIVE 44 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHHHH
Confidence 5667778889999999999999999999999987665544444
No 396
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=44.68 E-value=1.5e+02 Score=29.13 Aligned_cols=40 Identities=15% Similarity=0.091 Sum_probs=32.8
Q ss_pred EEEEEcCCCccChHHHHHHHHHHH--hCCCEEEEEeCCcchH
Q 044266 6 HVLAFPYPAQGHVIPLLEISQCLV--KHGVKVTFLNTDYNHK 45 (462)
Q Consensus 6 ~Il~~~~~~~GH~~p~l~La~~L~--~rGh~Vt~~~~~~~~~ 45 (462)
.|+|+..++.|-..-...||..++ ..|+.|.+++.+.++.
T Consensus 223 ~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~ 264 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRI 264 (424)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHH
Confidence 466777677799999999999997 5689999999988653
No 397
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=44.64 E-value=2.1e+02 Score=30.09 Aligned_cols=33 Identities=3% Similarity=-0.199 Sum_probs=22.1
Q ss_pred CCceEEEeCCCcc-hHHHHHHHcCCceEEEccch
Q 044266 107 EKITCVVADGSMG-WVMEVAEKMKLRRAAFWPAA 139 (462)
Q Consensus 107 ~~~Dlvi~D~~~~-~~~~~A~~lgiP~v~~~~~~ 139 (462)
.+||++|+-.+.. ....+-+.....++-++++.
T Consensus 74 ~~~D~iv~~~~~~ii~~~il~~~~~g~iN~H~sl 107 (660)
T PRK08125 74 LAPDVIFSFYYRNLLSDEILQLAPAGAFNLHGSL 107 (660)
T ss_pred cCCCEEEEccccccCCHHHHhhcCCCEEEEeCCc
Confidence 8999999875433 44455555566677777764
No 398
>KOG1053 consensus Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=44.39 E-value=13 Score=39.06 Aligned_cols=77 Identities=12% Similarity=0.186 Sum_probs=62.2
Q ss_pred CCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHhccHHHHHHHHHHhhccCCCceEEEeCCCcchHHHHHHHcCCceEEEcc
Q 044266 58 GDQIKLVSIPDGMEPEGDRNDLGMLTKTMVRVMPEKLEELIENINRLENEKITCVVADGSMGWVMEVAEKMKLRRAAFWP 137 (462)
Q Consensus 58 ~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~~~~~~A~~lgiP~v~~~~ 137 (462)
.|+++|=.+|.+-.....+.+..++-..+.+...+.+++.++.++. .+-|..|+|. ..--..+.+.-||..+++.+
T Consensus 686 ~PpFRFGTVpngSTE~niR~Nyp~MHeYM~kyNq~~v~dal~sLK~---gKLDAFIyDa-AVLnY~agkDegCKLvTIGs 761 (1258)
T KOG1053|consen 686 YPPFRFGTVPNGSTERNIRSNYPEMHEYMVKYNQPGVEDALESLKN---GKLDAFIYDA-AVLNYMAGKDEGCKLVTIGS 761 (1258)
T ss_pred CCCcccccCCCCchhhhHHhccHHHHHHHHHhccCchHHHHHHHhc---ccchhHHHHH-HHHHHhhccCCCceEEEecC
Confidence 3688898888888888778888888888888888889999999998 9999999994 33344556667888888874
Q ss_pred c
Q 044266 138 A 138 (462)
Q Consensus 138 ~ 138 (462)
.
T Consensus 762 g 762 (1258)
T KOG1053|consen 762 G 762 (1258)
T ss_pred C
Confidence 3
No 399
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.09 E-value=58 Score=26.71 Aligned_cols=48 Identities=10% Similarity=0.085 Sum_probs=34.3
Q ss_pred HHHHHHHHhhcc-CCCceEEEeCCCcc----------hHHHHHHHcCCceEEEccchhH
Q 044266 94 LEELIENINRLE-NEKITCVVADGSMG----------WVMEVAEKMKLRRAAFWPAAAG 141 (462)
Q Consensus 94 ~~~l~~~l~~~~-~~~~Dlvi~D~~~~----------~~~~~A~~lgiP~v~~~~~~~~ 141 (462)
++.++..++.+. ++.||+|++..-.- -+..+|+++|+|+.-.+.+...
T Consensus 109 vrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg~ 167 (219)
T KOG0081|consen 109 VRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTGT 167 (219)
T ss_pred HHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccCc
Confidence 456666666522 59999999876432 3667899999999887665544
No 400
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=44.05 E-value=68 Score=30.12 Aligned_cols=34 Identities=18% Similarity=0.371 Sum_probs=30.1
Q ss_pred EcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcc
Q 044266 10 FPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYN 43 (462)
Q Consensus 10 ~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 43 (462)
++.|+.|-.--.+.||+.|.+||..|-+++-.+-
T Consensus 55 ltvGGtGKTP~vi~la~~l~~rG~~~gvvSRGYg 88 (336)
T COG1663 55 LTVGGTGKTPVVIWLAEALQARGVRVGVVSRGYG 88 (336)
T ss_pred EEECCCCcCHHHHHHHHHHHhcCCeeEEEecCcC
Confidence 4578889999999999999999999999997654
No 401
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=43.92 E-value=13 Score=32.00 Aligned_cols=34 Identities=15% Similarity=0.146 Sum_probs=26.2
Q ss_pred CCceEEE-eCCCcc-hHHHHHHHcCCceEEEccchh
Q 044266 107 EKITCVV-ADGSMG-WVMEVAEKMKLRRAAFWPAAA 140 (462)
Q Consensus 107 ~~~Dlvi-~D~~~~-~~~~~A~~lgiP~v~~~~~~~ 140 (462)
..||+|| +|+..- -+..-|.++|||++.++-+..
T Consensus 107 ~~Pdlliv~dp~~~~~Av~EA~~l~IP~Iai~DTn~ 142 (196)
T TIGR01012 107 REPEVVVVTDPRADHQALKEASEVGIPIVALCDTDN 142 (196)
T ss_pred CCCCEEEEECCccccHHHHHHHHcCCCEEEEeeCCC
Confidence 5788766 566544 778889999999999876554
No 402
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=43.89 E-value=2.8e+02 Score=26.03 Aligned_cols=98 Identities=17% Similarity=0.253 Sum_probs=58.3
Q ss_pred EEEEEcCCCcc---Ch--HHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcCCCCCCCCCCCCHH
Q 044266 6 HVLAFPYPAQG---HV--IPLLEISQCLVKHGVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIPDGMEPEGDRNDLG 80 (462)
Q Consensus 6 ~Il~~~~~~~G---H~--~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~ 80 (462)
-|++-|+.+.| .+ .-+.+|++.|.++|++|.+++++..++...+... .. +....
T Consensus 176 ~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e~~~~~~i~~-------~~-----~~~~~--------- 234 (334)
T TIGR02195 176 IIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKDHPAGNEIEA-------LL-----PGELR--------- 234 (334)
T ss_pred EEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhhHHHHHHHHH-------hC-----Ccccc---------
Confidence 45565544333 22 2578999999988999999988766554443210 00 00000
Q ss_pred HHHHHHHHhccHHHHHHHHHHhhccCCCceEEEeCCCcchHHHHHHHcCCceEEEcc
Q 044266 81 MLTKTMVRVMPEKLEELIENINRLENEKITCVVADGSMGWVMEVAEKMKLRRAAFWP 137 (462)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~~~~~~A~~lgiP~v~~~~ 137 (462)
.+. -...+.++...+ .+-|++|+.. .....+|..+|+|++.++.
T Consensus 235 ----~l~--g~~sL~el~ali-----~~a~l~I~~D--SGp~HlAaA~~~P~i~lfG 278 (334)
T TIGR02195 235 ----NLA--GETSLDEAVDLI-----ALAKAVVTND--SGLMHVAAALNRPLVALYG 278 (334)
T ss_pred ----cCC--CCCCHHHHHHHH-----HhCCEEEeeC--CHHHHHHHHcCCCEEEEEC
Confidence 000 011244444444 4567888763 5678899999999998755
No 403
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=43.76 E-value=1.5e+02 Score=32.56 Aligned_cols=28 Identities=18% Similarity=-0.014 Sum_probs=22.6
Q ss_pred CCceEEEeCCCcchHHHHHHHcCCceEEEcc
Q 044266 107 EKITCVVADGSMGWVMEVAEKMKLRRAAFWP 137 (462)
Q Consensus 107 ~~~Dlvi~D~~~~~~~~~A~~lgiP~v~~~~ 137 (462)
.+||++|... -...+|+++|||++....
T Consensus 388 ~~pDLlig~~---~~~~~a~k~giP~~~~~~ 415 (917)
T PRK14477 388 KMPDLIVAGG---KTKFLALKTRTPFLDINH 415 (917)
T ss_pred cCCCEEEecC---chhhHHHHcCCCeEEccC
Confidence 8999999864 346679999999997653
No 404
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=43.70 E-value=59 Score=25.81 Aligned_cols=36 Identities=19% Similarity=0.254 Sum_probs=24.8
Q ss_pred EEE-EEcCCCccChH--HHHHHHHHHHhCCCEE-EEEeCC
Q 044266 6 HVL-AFPYPAQGHVI--PLLEISQCLVKHGVKV-TFLNTD 41 (462)
Q Consensus 6 ~Il-~~~~~~~GH~~--p~l~La~~L~~rGh~V-t~~~~~ 41 (462)
|++ ++..+.+|+-. -.+.+|+.+...||+| +++-..
T Consensus 2 ~~~iv~~~~Py~~~~~~~al~~A~aa~~~gh~v~~vFf~~ 41 (128)
T PRK00207 2 RYAIAVTGPAYGTQQASSAYQFAQALLAEGHELVSVFFYQ 41 (128)
T ss_pred EEEEEEcCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEEeh
Confidence 554 45555666655 4777899999999994 665544
No 405
>PF00318 Ribosomal_S2: Ribosomal protein S2; InterPro: IPR001865 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal S2 proteins have been shown to belong to a family that includes 40S ribosomal subunit 40kDa proteins, putative laminin-binding proteins, NAB-1 protein and 29.3kDa protein from Haloarcula marismortui [, ]. The laminin-receptor proteins are thus predicted to be the eukaryotic homologue of the eubacterial S2 risosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2QNH_c 3MR8_B 3PYS_B 3MS0_B 3PYN_B 1VOZ_B 2OW8_c 3PYQ_B 3D5C_B 3PYU_B ....
Probab=43.65 E-value=86 Score=27.40 Aligned_cols=34 Identities=12% Similarity=0.062 Sum_probs=24.3
Q ss_pred CCceEEEeCC-Ccc-hHHHHHHHcCCceEEEccchh
Q 044266 107 EKITCVVADG-SMG-WVMEVAEKMKLRRAAFWPAAA 140 (462)
Q Consensus 107 ~~~Dlvi~D~-~~~-~~~~~A~~lgiP~v~~~~~~~ 140 (462)
..||+||+-. ..- .+..-|..+|||++.+.-+..
T Consensus 142 ~~P~~vii~~~~~~~~~i~Ea~~l~IP~i~i~Dtn~ 177 (211)
T PF00318_consen 142 KLPDLVIILDPNKNKNAIREANKLNIPTIAIVDTNC 177 (211)
T ss_dssp SSBSEEEESSTTTTHHHHHHHHHTTS-EEEEESTTS
T ss_pred ccCcEEEEecccccchhHHHHHhcCceEEEeecCCC
Confidence 5699987544 333 777889999999999876553
No 406
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=43.48 E-value=59 Score=30.33 Aligned_cols=35 Identities=11% Similarity=0.096 Sum_probs=28.7
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCc
Q 044266 3 RRPHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDY 42 (462)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 42 (462)
+++||.++-.|..| ..+|+.|.++||+|++.....
T Consensus 3 ~~m~I~iiG~G~~G-----~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 3 QPKTIAILGAGAWG-----STLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCCEEEEECccHHH-----HHHHHHHHHCCCEEEEEeCCC
Confidence 46789998877766 478999999999999998654
No 407
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=43.44 E-value=28 Score=32.02 Aligned_cols=28 Identities=18% Similarity=0.190 Sum_probs=21.6
Q ss_pred HHHHHHHhCCCEEEEEeCCcchHHHHHh
Q 044266 23 EISQCLVKHGVKVTFLNTDYNHKRVVNA 50 (462)
Q Consensus 23 ~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 50 (462)
.+|..|++.||+|+++......+.+.+.
T Consensus 5 ~~a~~L~~~G~~V~l~~r~~~~~~i~~~ 32 (293)
T TIGR00745 5 LYGAYLARAGHDVTLLARGEQLEALNQE 32 (293)
T ss_pred HHHHHHHhCCCcEEEEecHHHHHHHHHC
Confidence 4688899999999999986445556554
No 408
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=43.41 E-value=39 Score=29.18 Aligned_cols=39 Identities=21% Similarity=0.290 Sum_probs=31.0
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCc
Q 044266 4 RPHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDY 42 (462)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 42 (462)
+.||.|=..|+.|-.+.|+.=|+.|.++|.+|.+..-..
T Consensus 5 rLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~vet 43 (211)
T PF02702_consen 5 RLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVET 43 (211)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE---
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEecC
Confidence 468899999999999999999999999999999877554
No 409
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=43.28 E-value=2.9e+02 Score=26.06 Aligned_cols=85 Identities=12% Similarity=0.081 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCcchH--HHHHhhcCCCCCCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHhccHHHHHH
Q 044266 20 PLLEISQCLVKHGVKVTFLNTDYNHK--RVVNALGQNNYIGDQIKLVSIPDGMEPEGDRNDLGMLTKTMVRVMPEKLEEL 97 (462)
Q Consensus 20 p~l~La~~L~~rGh~Vt~~~~~~~~~--~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 97 (462)
-+.+|++.|.++|.+|.+++.+...+ .+.+... .. +.. . ...+. ..-.+.++
T Consensus 201 ~~~~l~~~l~~~~~~ivl~g~p~~~e~~~~~~i~~-------~~-----~~~--------~----~~~l~--g~~sL~el 254 (344)
T TIGR02201 201 RFSALIDALHARGYEVVLTSGPDKDELAMVNEIAQ-------GC-----QTP--------R----VTSLA--GKLTLPQL 254 (344)
T ss_pred HHHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHh-------hC-----CCC--------c----ccccC--CCCCHHHH
Confidence 46789999988899998887754222 2222100 00 000 0 00000 01124455
Q ss_pred HHHHhhccCCCceEEEeCCCcchHHHHHHHcCCceEEEcc
Q 044266 98 IENINRLENEKITCVVADGSMGWVMEVAEKMKLRRAAFWP 137 (462)
Q Consensus 98 ~~~l~~~~~~~~Dlvi~D~~~~~~~~~A~~lgiP~v~~~~ 137 (462)
...+ .+-|++|+. ......+|..+|+|+|.++.
T Consensus 255 ~ali-----~~a~l~Vs~--DSGp~HlAaA~g~p~v~Lfg 287 (344)
T TIGR02201 255 AALI-----DHARLFIGV--DSVPMHMAAALGTPLVALFG 287 (344)
T ss_pred HHHH-----HhCCEEEec--CCHHHHHHHHcCCCEEEEEC
Confidence 5544 467888876 36788999999999999764
No 410
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=43.24 E-value=1.1e+02 Score=27.08 Aligned_cols=46 Identities=17% Similarity=0.168 Sum_probs=35.4
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH
Q 044266 4 RPHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVN 49 (462)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~ 49 (462)
..-+++...++.|-..-...++...+++|..|.|++.....+.+.+
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~ 70 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLK 70 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHH
Confidence 3345666777889988899998888789999999999876544433
No 411
>PRK07004 replicative DNA helicase; Provisional
Probab=43.15 E-value=1.4e+02 Score=29.74 Aligned_cols=41 Identities=12% Similarity=0.298 Sum_probs=32.9
Q ss_pred EEEEcCCCccChHHHHHHHHHHH-hCCCEEEEEeCCcchHHH
Q 044266 7 VLAFPYPAQGHVIPLLEISQCLV-KHGVKVTFLNTDYNHKRV 47 (462)
Q Consensus 7 Il~~~~~~~GH~~p~l~La~~L~-~rGh~Vt~~~~~~~~~~v 47 (462)
|++...|+.|-..-.+.+|..++ +.|+.|.|++..-..+.+
T Consensus 216 iviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~~~ql 257 (460)
T PRK07004 216 IIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPGTQL 257 (460)
T ss_pred EEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCCHHHH
Confidence 55677889999999999999886 469999999887655443
No 412
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=43.11 E-value=1.1e+02 Score=23.97 Aligned_cols=21 Identities=14% Similarity=0.069 Sum_probs=14.5
Q ss_pred HHHHHHHHHhCCCEEEEEeCC
Q 044266 21 LLEISQCLVKHGVKVTFLNTD 41 (462)
Q Consensus 21 ~l~La~~L~~rGh~Vt~~~~~ 41 (462)
+-.+...|.++|++|++++-.
T Consensus 14 ~gg~i~~~~~~g~~v~vv~~t 34 (128)
T PF02585_consen 14 CGGTIAKLAEAGHRVVVVTLT 34 (128)
T ss_dssp HHHHHHHHHHTT-EEEEEECE
T ss_pred hHHHHHHHHhcCCeEEEEEec
Confidence 444556788899999988854
No 413
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=43.04 E-value=1.2e+02 Score=28.88 Aligned_cols=85 Identities=11% Similarity=0.080 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCcchHH--HHHhhcCCCCCCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHhccHHHHHH
Q 044266 20 PLLEISQCLVKHGVKVTFLNTDYNHKR--VVNALGQNNYIGDQIKLVSIPDGMEPEGDRNDLGMLTKTMVRVMPEKLEEL 97 (462)
Q Consensus 20 p~l~La~~L~~rGh~Vt~~~~~~~~~~--v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 97 (462)
-+.+|++.|.++|++|.+++.+...+. ..+... .+ . .. . .. .+. -.-.+.++
T Consensus 203 ~fa~l~~~L~~~~~~vvl~ggp~e~e~~~~~~i~~-------~~-----~----~~----~---~~-~l~--g~~sL~el 256 (352)
T PRK10422 203 KFSAVIDALQARGYEVVLTSGPDKDDLACVNEIAQ-------GC-----Q----TP----P---VT-ALA--GKTTFPEL 256 (352)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCChHHHHHHHHHHH-------hc-----C----CC----c---cc-ccc--CCCCHHHH
Confidence 477899999888999888876543222 222100 00 0 00 0 00 000 01124455
Q ss_pred HHHHhhccCCCceEEEeCCCcchHHHHHHHcCCceEEEcc
Q 044266 98 IENINRLENEKITCVVADGSMGWVMEVAEKMKLRRAAFWP 137 (462)
Q Consensus 98 ~~~l~~~~~~~~Dlvi~D~~~~~~~~~A~~lgiP~v~~~~ 137 (462)
...+ .+-|++|+.. .....+|..+|+|+|.++.
T Consensus 257 ~ali-----~~a~l~v~nD--SGp~HlAaA~g~P~v~lfG 289 (352)
T PRK10422 257 GALI-----DHAQLFIGVD--SAPAHIAAAVNTPLICLFG 289 (352)
T ss_pred HHHH-----HhCCEEEecC--CHHHHHHHHcCCCEEEEEC
Confidence 5554 4678888764 5678999999999999764
No 414
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=42.95 E-value=14 Score=32.06 Aligned_cols=34 Identities=15% Similarity=0.053 Sum_probs=26.1
Q ss_pred CCceEEE-eCCCcc-hHHHHHHHcCCceEEEccchh
Q 044266 107 EKITCVV-ADGSMG-WVMEVAEKMKLRRAAFWPAAA 140 (462)
Q Consensus 107 ~~~Dlvi-~D~~~~-~~~~~A~~lgiP~v~~~~~~~ 140 (462)
..||+|| +|+..- -+..-|.++|||++.++-+..
T Consensus 113 ~~Pdliiv~dp~~~~~AI~EA~kl~IP~IaivDTn~ 148 (204)
T PRK04020 113 IEPDVVVVTDPRGDAQAVKEAIEVGIPVVALCDTDN 148 (204)
T ss_pred CCCCEEEEECCcccHHHHHHHHHhCCCEEEEEeCCC
Confidence 5788876 565444 777889999999999876554
No 415
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=42.75 E-value=87 Score=24.99 Aligned_cols=43 Identities=21% Similarity=0.189 Sum_probs=37.0
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchH
Q 044266 3 RRPHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHK 45 (462)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 45 (462)
++.||++-..++-+|-.----++..|...|++|.........+
T Consensus 1 ~~~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e 43 (132)
T TIGR00640 1 RRPRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQTPE 43 (132)
T ss_pred CCCEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCCCHH
Confidence 3579999999999999999999999999999999988765433
No 416
>PRK04328 hypothetical protein; Provisional
Probab=42.61 E-value=2.5e+02 Score=25.16 Aligned_cols=45 Identities=18% Similarity=0.087 Sum_probs=33.3
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHH
Q 044266 4 RPHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVV 48 (462)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~ 48 (462)
..-+++...|+.|-..-.+.++.+-+++|+.+.+++.....+.+.
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~~~i~ 67 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPVQVR 67 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCHHHHH
Confidence 334566667777887878887777667899999999877655443
No 417
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=42.21 E-value=2e+02 Score=26.94 Aligned_cols=45 Identities=24% Similarity=0.400 Sum_probs=35.4
Q ss_pred cHHHHHHHHHHhhccCCCceEEEeCCCcc--hHHHHHHHcCCceEEEccc
Q 044266 91 PEKLEELIENINRLENEKITCVVADGSMG--WVMEVAEKMKLRRAAFWPA 138 (462)
Q Consensus 91 ~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~--~~~~~A~~lgiP~v~~~~~ 138 (462)
...+.++++.+++ .+..+|++++.+. .+-.+++..|++.+.+.+.
T Consensus 238 ~~~l~~l~~~ik~---~~v~~If~e~~~~~~~~~~la~e~g~~v~~ldpl 284 (311)
T PRK09545 238 AQRLHEIRTQLVE---QKATCVFAEPQFRPAVIESVAKGTSVRMGTLDPL 284 (311)
T ss_pred HHHHHHHHHHHHH---cCCCEEEecCCCChHHHHHHHHhcCCeEEEeccc
Confidence 4456677777777 8999999999777 5668899999998776543
No 418
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=42.09 E-value=85 Score=29.37 Aligned_cols=35 Identities=17% Similarity=0.345 Sum_probs=29.3
Q ss_pred EcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcch
Q 044266 10 FPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNH 44 (462)
Q Consensus 10 ~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 44 (462)
++.|+.|-.--.+.|++.|.++|++|.+++-..-.
T Consensus 36 itvGGTGKTP~v~~La~~l~~~G~~~~IlSRGYg~ 70 (311)
T TIGR00682 36 LSVGGTGKTPVVVWLAELLKDRGLRVGVLSRGYGS 70 (311)
T ss_pred cccCCcChHHHHHHHHHHHHHCCCEEEEECCCCCC
Confidence 34678888888999999999999999999976543
No 419
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=42.06 E-value=33 Score=31.63 Aligned_cols=75 Identities=13% Similarity=0.232 Sum_probs=49.5
Q ss_pred cccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCcccccCchhHHHHhcCCceeecccCcccccCCCCcccceeccCchhhh
Q 044266 281 TVFDKEQFQELASGLELTNRPFLWVVRPDITNDAIDAYPEGFQDRVATRRQMVGWAPQQKVLTHPSIACFLSHCGWNSTM 360 (462)
Q Consensus 281 ~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~ll~~~~~~~~I~HgG~~sv~ 360 (462)
+..+.+..+.+.+|+.....+.||...++- +..++.++++...+-+++++ ||-..-..+++
T Consensus 44 a~s~~~Ra~dL~~a~~d~~i~aI~~~rGG~-----------------ga~rlL~~ld~~~~~~~pK~--~iGySDiTaL~ 104 (282)
T cd07025 44 AGTDEERAADLNAAFADPEIKAIWCARGGY-----------------GANRLLPYLDYDLIRANPKI--FVGYSDITALH 104 (282)
T ss_pred CCCHHHHHHHHHHHhhCCCCCEEEEcCCcC-----------------CHHHhhhhCCHHHHhhCCeE--EEEecHHHHHH
Confidence 344666788899999999999999988761 11234455555555566665 77666666676
Q ss_pred hhhhc--CCceecccc
Q 044266 361 EGVSN--GVPFLCWPY 374 (462)
Q Consensus 361 eal~~--GvP~l~~P~ 374 (462)
-+++. |++.+--|.
T Consensus 105 ~~l~~~~g~~t~hGp~ 120 (282)
T cd07025 105 LALYAKTGLVTFHGPM 120 (282)
T ss_pred HHHHHhcCceEEECcc
Confidence 66653 666655554
No 420
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=41.99 E-value=26 Score=35.99 Aligned_cols=53 Identities=26% Similarity=0.549 Sum_probs=38.1
Q ss_pred cccceeccCchhhhhhhh----cCCceeccccccchhhhHHhHhhhheeeEEeecCCCCccCHHHHHHHHHHHhcCH
Q 044266 347 IACFLSHCGWNSTMEGVS----NGVPFLCWPYFADQFLNESYICDIWKVGLRFNKNKNGIITREEIMKKVDQVLEDE 419 (462)
Q Consensus 347 ~~~~I~HgG~~sv~eal~----~GvP~l~~P~~~DQ~~na~~v~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ll~~~ 419 (462)
++++|+-||-||++.+.. .++|++.+ |.- .+|. + ...+++++.+++.++++++
T Consensus 349 ~dlvi~lGGDGT~L~aa~~~~~~~~PilGi--------n~G------~lGF-L-----~~~~~~~~~~~l~~~~~g~ 405 (569)
T PRK14076 349 ISHIISIGGDGTVLRASKLVNGEEIPIICI--------NMG------TVGF-L-----TEFSKEEIFKAIDSIISGE 405 (569)
T ss_pred CCEEEEECCcHHHHHHHHHhcCCCCCEEEE--------cCC------CCCc-C-----cccCHHHHHHHHHHHHcCC
Confidence 455999999999999976 37888877 221 1222 1 2367889999999998654
No 421
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=41.82 E-value=2.2e+02 Score=26.19 Aligned_cols=45 Identities=20% Similarity=0.314 Sum_probs=34.9
Q ss_pred cHHHHHHHHHHhhccCCCceEEEeCCCcc--hHHHHHHHcCCceEEEccc
Q 044266 91 PEKLEELIENINRLENEKITCVVADGSMG--WVMEVAEKMKLRRAAFWPA 138 (462)
Q Consensus 91 ~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~--~~~~~A~~lgiP~v~~~~~ 138 (462)
...+.++++.+++ .+.++|+++.... .+-.+++..|++.+.+.+.
T Consensus 214 ~~~l~~l~~~ik~---~~v~~If~e~~~~~~~~~~ia~~~g~~v~~l~~l 260 (286)
T cd01019 214 AKRLAKIRKEIKE---KGATCVFAEPQFHPKIAETLAEGTGAKVGELDPL 260 (286)
T ss_pred HHHHHHHHHHHHH---cCCcEEEecCCCChHHHHHHHHhcCceEEEeccc
Confidence 3456666777776 8999999998766 6778999999988776543
No 422
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=41.77 E-value=46 Score=33.13 Aligned_cols=46 Identities=15% Similarity=0.083 Sum_probs=35.2
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh
Q 044266 4 RPHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNA 50 (462)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 50 (462)
+.||++...++-+ .+=...|++.|.++|++|.++.++.-.+.+...
T Consensus 70 ~k~IllgVtGsIA-ayka~~lvr~L~k~G~~V~VvmT~sA~~fv~p~ 115 (475)
T PRK13982 70 SKRVTLIIGGGIA-AYKALDLIRRLKERGAHVRCVLTKAAQQFVTPL 115 (475)
T ss_pred CCEEEEEEccHHH-HHHHHHHHHHHHhCcCEEEEEECcCHHHHhhHH
Confidence 4678776655443 447889999999999999999998876666543
No 423
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=41.42 E-value=28 Score=28.00 Aligned_cols=50 Identities=18% Similarity=0.326 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhHhhcCCCcHHHHHHHHHHHHhhh
Q 044266 405 REEIMKKVDQVLEDENFKARALDLKETSLNSVREGGQSDKTFKNFVQWIKAEA 457 (462)
Q Consensus 405 ~~~l~~~i~~ll~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 457 (462)
++++.+.=.+.|.|+++++.-..=+..|-+. .|-+.++|+++++......
T Consensus 2 Re~li~~A~~FL~~p~V~~sp~~~k~~FL~s---KGLt~~EI~~al~~a~~~~ 51 (136)
T PF04695_consen 2 REDLIEQAVKFLQDPKVRNSPLEKKIAFLES---KGLTEEEIDEALGRAGSPP 51 (136)
T ss_dssp HHHHHHHHHHHHCTTTCCCS-HHHHHHHHHH---CT--HHHHHHHHHHHT--S
T ss_pred HHHHHHHHHHHhCCcccccCCHHHHHHHHHc---CCCCHHHHHHHHHhcCCcc
Confidence 3455555557788999988888888888886 8999999999998765543
No 424
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=41.31 E-value=1.7e+02 Score=28.71 Aligned_cols=26 Identities=12% Similarity=0.153 Sum_probs=21.5
Q ss_pred CCceEEEeCCCcchHHHHHHHcCCceEEE
Q 044266 107 EKITCVVADGSMGWVMEVAEKMKLRRAAF 135 (462)
Q Consensus 107 ~~~Dlvi~D~~~~~~~~~A~~lgiP~v~~ 135 (462)
.+||++|..... ..+|+++|||++.+
T Consensus 357 ~~pdliig~s~~---~~~a~~lgip~~~~ 382 (415)
T cd01977 357 LKPDIILTGPRV---GELVKKLHVPYVNI 382 (415)
T ss_pred cCCCEEEecCcc---chhhhhcCCCEEec
Confidence 799999988533 36899999999986
No 425
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=41.12 E-value=39 Score=30.35 Aligned_cols=25 Identities=12% Similarity=0.175 Sum_probs=20.6
Q ss_pred ccceeccCchhhhhhhhc----CCceecc
Q 044266 348 ACFLSHCGWNSTMEGVSN----GVPFLCW 372 (462)
Q Consensus 348 ~~~I~HgG~~sv~eal~~----GvP~l~~ 372 (462)
+++|+-||-||++.++.. ++|++.+
T Consensus 27 Dlvi~iGGDGTlL~a~~~~~~~~~PvlGI 55 (246)
T PRK04761 27 DVIVALGGDGFMLQTLHRYMNSGKPVYGM 55 (246)
T ss_pred CEEEEECCCHHHHHHHHHhcCCCCeEEEE
Confidence 449999999999988654 6888777
No 426
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=40.94 E-value=54 Score=31.75 Aligned_cols=42 Identities=12% Similarity=0.189 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhhccCCCceEEEeCCCcch----------HHHHHHHcCCceEEEc
Q 044266 92 EKLEELIENINRLENEKITCVVADGSMGW----------VMEVAEKMKLRRAAFW 136 (462)
Q Consensus 92 ~~~~~l~~~l~~~~~~~~Dlvi~D~~~~~----------~~~~A~~lgiP~v~~~ 136 (462)
...+++++-++. .+||++|+-+.+.. +..+.+++|||.++-.
T Consensus 63 ea~~~i~~mv~k---~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~M 114 (431)
T TIGR01918 63 EAVARVLEMLKD---KEPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTSM 114 (431)
T ss_pred HHHHHHHHHHHh---cCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 334555555555 99999999986653 2235677999999854
No 427
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=40.78 E-value=36 Score=32.81 Aligned_cols=70 Identities=14% Similarity=0.223 Sum_probs=45.2
Q ss_pred cccceeccCchhhhhhhhcC-----------------CceeccccccchhhhHHhHhhhheeeEEe-ecCCCCccCHHHH
Q 044266 347 IACFLSHCGWNSTMEGVSNG-----------------VPFLCWPYFADQFLNESYICDIWKVGLRF-NKNKNGIITREEI 408 (462)
Q Consensus 347 ~~~~I~HgG~~sv~eal~~G-----------------vP~l~~P~~~DQ~~na~~v~~~~g~g~~~-~~~~~~~~~~~~l 408 (462)
.++++|.||..+.+-|+.+. .|++.++-.. |.-+.+-.. .+|+|++. +.+++..++.+.|
T Consensus 104 ~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~a-H~S~~Kaa~-~lGlg~~~I~~~~~~~md~~~L 181 (373)
T PF00282_consen 104 AGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQA-HYSIEKAAR-ILGLGVRKIPTDEDGRMDIEAL 181 (373)
T ss_dssp SEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS--THHHHHHH-HTTSEEEEE-BBTTSSB-HHHH
T ss_pred CceeEeccchHHHHHHHHHHHHHHhhhhhhccccccccccccccccc-ccHHHHhcc-eeeeEEEEecCCcchhhhHHHh
Confidence 56799999999888776433 4555554332 444433333 47888544 3455567899999
Q ss_pred HHHHHHHhcC
Q 044266 409 MKKVDQVLED 418 (462)
Q Consensus 409 ~~~i~~ll~~ 418 (462)
.++|++...+
T Consensus 182 ~~~l~~~~~~ 191 (373)
T PF00282_consen 182 EKALEKDIAN 191 (373)
T ss_dssp HHHHHHHHHT
T ss_pred hhhhcccccc
Confidence 9999887754
No 428
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=40.76 E-value=1.1e+02 Score=22.34 Aligned_cols=47 Identities=21% Similarity=0.348 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhcCHH----HHHHHHHHHHHHHhHhhcCCCc---HHHHHHHHHHHHh
Q 044266 406 EEIMKKVDQVLEDEN----FKARALDLKETSLNSVREGGQS---DKTFKNFVQWIKA 455 (462)
Q Consensus 406 ~~l~~~i~~ll~~~~----~~~~a~~l~~~~~~~~~~~g~~---~~~~~~~~~~~~~ 455 (462)
+++...++++++|.. +|+.|.+..+.+.+. +.+. .+..-+.++++..
T Consensus 16 ~q~~~lL~~Ii~DttVPRNIRraA~~a~e~L~~e---~e~p~vRaAtaIsiLeeisn 69 (93)
T COG1698 16 NQVMQLLDEIIQDTTVPRNIRRAAEEAKEALNNE---GESPAVRAATAISILEEISN 69 (93)
T ss_pred HHHHHHHHHHHccccccHHHHHHHHHHHHHHhCC---CCCchhHHHHHHHHHHHHhc
Confidence 344555667777764 555555555555542 3333 3445556666654
No 429
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=40.73 E-value=55 Score=31.73 Aligned_cols=42 Identities=12% Similarity=0.162 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhhccCCCceEEEeCCCcch----------HHHHHHHcCCceEEEc
Q 044266 92 EKLEELIENINRLENEKITCVVADGSMGW----------VMEVAEKMKLRRAAFW 136 (462)
Q Consensus 92 ~~~~~l~~~l~~~~~~~~Dlvi~D~~~~~----------~~~~A~~lgiP~v~~~ 136 (462)
...+++++-++. .+||++|+-+.+.. +..+.+++|||.++-.
T Consensus 63 ea~~~i~~mv~k---~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vtaM 114 (431)
T TIGR01917 63 EAKAKVLEMIKG---ANPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTAM 114 (431)
T ss_pred HHHHHHHHHHHh---cCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 334555555555 99999999986653 2235677999999854
No 430
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=40.43 E-value=39 Score=29.88 Aligned_cols=26 Identities=15% Similarity=0.304 Sum_probs=20.0
Q ss_pred ChHHHHHHHHHHHhCCCEEEEEeCCc
Q 044266 17 HVIPLLEISQCLVKHGVKVTFLNTDY 42 (462)
Q Consensus 17 H~~p~l~La~~L~~rGh~Vt~~~~~~ 42 (462)
|+..|-..|++|.++||+|.++....
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~~ 72 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELDD 72 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT-
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 56788999999999999999999873
No 431
>PRK06904 replicative DNA helicase; Validated
Probab=40.41 E-value=1.6e+02 Score=29.41 Aligned_cols=42 Identities=7% Similarity=0.194 Sum_probs=33.1
Q ss_pred EEEEcCCCccChHHHHHHHHHHHh-CCCEEEEEeCCcchHHHH
Q 044266 7 VLAFPYPAQGHVIPLLEISQCLVK-HGVKVTFLNTDYNHKRVV 48 (462)
Q Consensus 7 Il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~~~~~v~ 48 (462)
|++-.-|+.|-..-.+.+|...+. .|+.|.|++..-..+.+.
T Consensus 224 iiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs~~ql~ 266 (472)
T PRK06904 224 IIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMPAEQIM 266 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHH
Confidence 456778899999999999998875 599999999876554443
No 432
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=40.29 E-value=2.8e+02 Score=24.93 Aligned_cols=36 Identities=14% Similarity=0.161 Sum_probs=28.6
Q ss_pred EEEEEc-CCCccChHHHHHHHHHHHhCCCEEEEEeCC
Q 044266 6 HVLAFP-YPAQGHVIPLLEISQCLVKHGVKVTFLNTD 41 (462)
Q Consensus 6 ~Il~~~-~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 41 (462)
.|.++. -|+.|-..-...||..|++.|+.|..+=-.
T Consensus 3 ~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~d 39 (243)
T PF06564_consen 3 VIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDLD 39 (243)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 444433 457799999999999999999999888654
No 433
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=40.10 E-value=2.9e+02 Score=25.65 Aligned_cols=38 Identities=24% Similarity=0.271 Sum_probs=31.4
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcc
Q 044266 6 HVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYN 43 (462)
Q Consensus 6 ~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 43 (462)
.|.+...++.|--.-+..|+..|.++|+.|.++.....
T Consensus 36 ~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~ 73 (300)
T TIGR00750 36 RVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPS 73 (300)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 45566667788888899999999999999999887653
No 434
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=39.86 E-value=61 Score=30.26 Aligned_cols=49 Identities=18% Similarity=0.216 Sum_probs=39.7
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcC
Q 044266 5 PHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIP 67 (462)
Q Consensus 5 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~ 67 (462)
+||+++-.|+.|=+ +|-.|++.||+|+++.-+...+.+.+. |+......
T Consensus 1 mkI~IlGaGAvG~l-----~g~~L~~~g~~V~~~~R~~~~~~l~~~---------GL~i~~~~ 49 (307)
T COG1893 1 MKILILGAGAIGSL-----LGARLAKAGHDVTLLVRSRRLEALKKK---------GLRIEDEG 49 (307)
T ss_pred CeEEEECCcHHHHH-----HHHHHHhCCCeEEEEecHHHHHHHHhC---------CeEEecCC
Confidence 48888888888754 678899999999999998887888876 78777644
No 435
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=39.42 E-value=2.1e+02 Score=25.81 Aligned_cols=110 Identities=14% Similarity=0.072 Sum_probs=62.5
Q ss_pred CCEEEEEcC-CCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhc---CC---CCCCCCeEEEEcCCCCCCC---
Q 044266 4 RPHVLAFPY-PAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNALG---QN---NYIGDQIKLVSIPDGMEPE--- 73 (462)
Q Consensus 4 ~~~Il~~~~-~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~---~~---~~~~~~i~~~~i~~~~~~~--- 73 (462)
+.|..|+.. |+.|-..-...||-.|+.-+|.|.++++++-+..--+... +. .....++-..+|.+...-.
T Consensus 18 slKwifVGGKGGVGKTTcs~sLAvqla~~r~~vLiISTDPAHNlSDAF~qkftk~pt~V~Gf~nLfAMEIDp~~e~~~~~ 97 (323)
T KOG2825|consen 18 SLKWIFVGGKGGVGKTTCSCSLAVQLAKVRESVLIISTDPAHNLSDAFSQKFTKTPTKVEGFENLFAMEIDPNVEMGDMP 97 (323)
T ss_pred eeeEEEEcCcCCcCccchhhHHHHHHhccCCceEEeecCcccchHHHHHHHhcCCCccccChhhheeeecCCchhhhhhH
Confidence 456666654 4569999999999999999999999999875432222111 11 1122333344444321111
Q ss_pred --------CCCCCHHHHHHHHHHhcc-----HHHHHHHHHHhhccCCCceEEEeCC
Q 044266 74 --------GDRNDLGMLTKTMVRVMP-----EKLEELIENINRLENEKITCVVADG 116 (462)
Q Consensus 74 --------~~~~~~~~~~~~~~~~~~-----~~~~~l~~~l~~~~~~~~Dlvi~D~ 116 (462)
....+-..++..+..... -.+.+.++.++. ..+|+||.|.
T Consensus 98 ~m~~~~~~n~~~~g~g~l~e~~~~~Pgideamsfae~~klvk~---~~F~~vVFDT 150 (323)
T KOG2825|consen 98 EMFGNAANNEGSDGKGMLQELANAFPGIDEAMSFAEVMKLVKG---MNFDVVVFDT 150 (323)
T ss_pred HHhhcccccccccchhHHHHHHhcCCChhHHHhHHHHHHHhhc---cccceEEecc
Confidence 011112344444443332 134456666666 8999999994
No 436
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=39.00 E-value=2.5e+02 Score=23.97 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=20.2
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhC
Q 044266 6 HVLAFPYPAQGHVIPLLEISQCLVKH 31 (462)
Q Consensus 6 ~Il~~~~~~~GH~~p~l~La~~L~~r 31 (462)
++++ -.|+.||..=++.|-+.|.++
T Consensus 40 ~~lV-vlGSGGHT~EMlrLl~~l~~~ 64 (211)
T KOG3339|consen 40 STLV-VLGSGGHTGEMLRLLEALQDL 64 (211)
T ss_pred eEEE-EEcCCCcHHHHHHHHHHHHhh
Confidence 4443 459999999999999999764
No 437
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=38.89 E-value=1.8e+02 Score=22.45 Aligned_cols=86 Identities=9% Similarity=0.082 Sum_probs=57.1
Q ss_pred ccChHHHHHHHHHHHhC--CCEEEEEeCCcchHHHHH-hhcCCCCCCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHhcc
Q 044266 15 QGHVIPLLEISQCLVKH--GVKVTFLNTDYNHKRVVN-ALGQNNYIGDQIKLVSIPDGMEPEGDRNDLGMLTKTMVRVMP 91 (462)
Q Consensus 15 ~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~v~~-~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (462)
.++-.-++++++.|.+- |+++. .+....+.+++ . |+.+..+ +--+.+ -.
T Consensus 8 d~dK~~~~~~a~~~~~ll~Gf~i~--AT~gTa~~L~~~~---------Gi~v~~v-k~~~~~----------------g~ 59 (115)
T cd01422 8 DNKKEDLVEFVKQHQELLSRHRLV--ATGTTGLLIQEAT---------GLTVNRM-KSGPLG----------------GD 59 (115)
T ss_pred ccchHHHHHHHHHHHHHhcCCEEE--EechHHHHHHHhh---------CCcEEEE-ecCCCC----------------ch
Confidence 45566788999999998 99984 56677788887 5 7877766 211111 11
Q ss_pred HHHHHHHHHHhhccCCCceEEEeCCC--cc--------hHHHHHHHcCCceEE
Q 044266 92 EKLEELIENINRLENEKITCVVADGS--MG--------WVMEVAEKMKLRRAA 134 (462)
Q Consensus 92 ~~~~~l~~~l~~~~~~~~Dlvi~D~~--~~--------~~~~~A~~lgiP~v~ 134 (462)
+.+.+++.. .+.|+||.-+. .. .-...|-..+||+++
T Consensus 60 ~~i~~~i~~------g~i~~VInt~~~~~~~~~~~dg~~iRr~a~~~~Ip~~T 106 (115)
T cd01422 60 QQIGALIAE------GEIDAVIFFRDPLTAQPHEPDVKALLRLCDVYNIPLAT 106 (115)
T ss_pred hHHHHHHHc------CceeEEEEcCCCCCCCcccccHHHHHHHHHHcCCCEEE
Confidence 334455554 89999987653 11 123448888999987
No 438
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=38.86 E-value=59 Score=30.09 Aligned_cols=39 Identities=21% Similarity=0.217 Sum_probs=34.1
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcc
Q 044266 5 PHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYN 43 (462)
Q Consensus 5 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 43 (462)
|||.+..=|+.|-..-...||..|+++|++|.++=.+..
T Consensus 1 m~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~DpQ 39 (290)
T CHL00072 1 MKLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDPK 39 (290)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 368888889999999999999999999999998866543
No 439
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=38.84 E-value=2e+02 Score=26.24 Aligned_cols=105 Identities=14% Similarity=0.097 Sum_probs=55.4
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcCCCCCCCCCCCCHHHHHHH
Q 044266 6 HVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIPDGMEPEGDRNDLGMLTKT 85 (462)
Q Consensus 6 ~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~ 85 (462)
=|++...|+.|-..-...|++.|.+.|.+|.+++..... +... . |.. ..-.+.
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~--~~~~----------~-y~~-----------~~~Ek~--- 55 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG--IDRN----------D-YAD-----------SKKEKE--- 55 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH---TTS----------S-S-------------GGGHHH---
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc--cchh----------h-hhc-----------hhhhHH---
Confidence 367888999999999999999999999999998843322 1111 1 110 011111
Q ss_pred HHHhccHHHHHHHHHHhhccCCCceEEEeCCCcc-h-----HHHHHHHcCCceEEEccchhHHHHH
Q 044266 86 MVRVMPEKLEELIENINRLENEKITCVVADGSMG-W-----VMEVAEKMKLRRAAFWPAAAGLLAL 145 (462)
Q Consensus 86 ~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~-~-----~~~~A~~lgiP~v~~~~~~~~~~~~ 145 (462)
.+..+...++..- .+-++||+|...+ - ...+|+..+.++..++...+.-.+.
T Consensus 56 ----~R~~l~s~v~r~l----s~~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~ 113 (270)
T PF08433_consen 56 ----ARGSLKSAVERAL----SKDTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCL 113 (270)
T ss_dssp ----HHHHHHHHHHHHH----TT-SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHH
T ss_pred ----HHHHHHHHHHHhh----ccCeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHH
Confidence 1222222222211 2338999998765 2 4478999999999887766654444
No 440
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=38.68 E-value=54 Score=29.30 Aligned_cols=39 Identities=21% Similarity=0.067 Sum_probs=25.5
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCC
Q 044266 3 RRPHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTD 41 (462)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 41 (462)
..++||++....-=-..-+-.....|+++||+|++++-.
T Consensus 9 ~~~~vL~v~aHPDDe~~g~ggtla~~~~~G~~V~v~~lT 47 (237)
T COG2120 9 DPLRVLVVFAHPDDEEIGCGGTLAKLAARGVEVTVVCLT 47 (237)
T ss_pred cCCcEEEEecCCcchhhccHHHHHHHHHCCCeEEEEEcc
Confidence 456787555333333344556666778999999999844
No 441
>PLN02712 arogenate dehydrogenase
Probab=38.55 E-value=2e+02 Score=30.25 Aligned_cols=36 Identities=14% Similarity=0.205 Sum_probs=27.1
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcc
Q 044266 3 RRPHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYN 43 (462)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 43 (462)
++++|.|+..|..|. .+|+.|.+.||+|+++.....
T Consensus 368 ~~~kIgIIGlG~mG~-----slA~~L~~~G~~V~~~dr~~~ 403 (667)
T PLN02712 368 SKLKIAIVGFGNFGQ-----FLAKTMVKQGHTVLAYSRSDY 403 (667)
T ss_pred CCCEEEEEecCHHHH-----HHHHHHHHCcCEEEEEECChH
Confidence 467899987555443 678889999999998876543
No 442
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=38.35 E-value=42 Score=23.04 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=18.8
Q ss_pred HHHHHHHHHhCCCEEEEEeCCcc
Q 044266 21 LLEISQCLVKHGVKVTFLNTDYN 43 (462)
Q Consensus 21 ~l~La~~L~~rGh~Vt~~~~~~~ 43 (462)
-+..|..|+++|++|+++=....
T Consensus 8 Gl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 8 GLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp HHHHHHHHHHTTSEEEEEESSSS
T ss_pred HHHHHHHHHHCCCcEEEEecCcc
Confidence 36778999999999999986654
No 443
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=38.15 E-value=2.1e+02 Score=26.06 Aligned_cols=86 Identities=14% Similarity=0.196 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHhccHHHHHHHH
Q 044266 20 PLLEISQCLVKHGVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIPDGMEPEGDRNDLGMLTKTMVRVMPEKLEELIE 99 (462)
Q Consensus 20 p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 99 (462)
-+.+|++.|.++|++|.+++.+...+..++..... .+-.... +.. ...+.+++.
T Consensus 141 ~~~~l~~~l~~~~~~ivl~g~~~e~~~~~~i~~~~----~~~~~~~--------------------~~~--~~~l~e~~~ 194 (279)
T cd03789 141 RFAALADRLLARGARVVLTGGPAERELAEEIAAAL----GGPRVVN--------------------LAG--KTSLRELAA 194 (279)
T ss_pred HHHHHHHHHHHCCCEEEEEechhhHHHHHHHHHhc----CCCcccc--------------------CcC--CCCHHHHHH
Confidence 58899999998999999998876655554431100 0000000 000 012344444
Q ss_pred HHhhccCCCceEEEeCCCcchHHHHHHHcCCceEEEccc
Q 044266 100 NINRLENEKITCVVADGSMGWVMEVAEKMKLRRAAFWPA 138 (462)
Q Consensus 100 ~l~~~~~~~~Dlvi~D~~~~~~~~~A~~lgiP~v~~~~~ 138 (462)
.+ .+-|++|+.. .....+|..+|+|++.++..
T Consensus 195 li-----~~~~l~I~~D--sg~~HlA~a~~~p~i~l~g~ 226 (279)
T cd03789 195 LL-----ARADLVVTND--SGPMHLAAALGTPTVALFGP 226 (279)
T ss_pred HH-----HhCCEEEeeC--CHHHHHHHHcCCCEEEEECC
Confidence 44 4578888753 46788889999999998653
No 444
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=38.15 E-value=2.5e+02 Score=26.94 Aligned_cols=94 Identities=14% Similarity=0.165 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCcchH----HHHHhhcCCCCCCCCeEE--EEcCCCCCCCCCCCCHHHHHHHHHHhccHH
Q 044266 20 PLLEISQCLVKHGVKVTFLNTDYNHK----RVVNALGQNNYIGDQIKL--VSIPDGMEPEGDRNDLGMLTKTMVRVMPEK 93 (462)
Q Consensus 20 p~l~La~~L~~rGh~Vt~~~~~~~~~----~v~~~~~~~~~~~~~i~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (462)
.+-.+++.|.+.|.++.+++.+...+ .+.+.... .++.+ ..++ .. .. ...
T Consensus 17 ~~~~l~~~l~~~g~~~livtd~~~~~~~~~~v~~~l~~-----~~~~~~~~~~~----~e-p~--------------~~~ 72 (366)
T PRK09423 17 ALARLGEYLKPLGKRALVIADEFVLGIVGDRVEASLKE-----AGLTVVFEVFN----GE-CS--------------DNE 72 (366)
T ss_pred HHHHHHHHHHHcCCEEEEEEChhHHHHHHHHHHHHHHh-----CCCeEEEEEeC----CC-CC--------------HHH
Confidence 35566777777788888888655332 22222111 13433 2222 11 11 123
Q ss_pred HHHHHHHHhhccCCCceEEEeCCCcc---hHHHHHHHcCCceEEEccchh
Q 044266 94 LEELIENINRLENEKITCVVADGSMG---WVMEVAEKMKLRRAAFWPAAA 140 (462)
Q Consensus 94 ~~~l~~~l~~~~~~~~Dlvi~D~~~~---~~~~~A~~lgiP~v~~~~~~~ 140 (462)
+++.++.+++ .++|+||.=.... .+..+|...++|++.+-|...
T Consensus 73 v~~~~~~~~~---~~~d~IIavGGGsv~D~aK~iA~~~~~p~i~IPTtag 119 (366)
T PRK09423 73 IDRLVAIAEE---NGCDVVIGIGGGKTLDTAKAVADYLGVPVVIVPTIAS 119 (366)
T ss_pred HHHHHHHHHh---cCCCEEEEecChHHHHHHHHHHHHcCCCEEEeCCccc
Confidence 4455555555 7899999654333 556667778999999877543
No 445
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=38.10 E-value=3.7e+02 Score=25.76 Aligned_cols=45 Identities=29% Similarity=0.419 Sum_probs=34.4
Q ss_pred hcCCceeecccCcc---cccCCCCcccceeccC----chhhhhhhhcCCceecc
Q 044266 326 VATRRQMVGWAPQQ---KVLTHPSIACFLSHCG----WNSTMEGVSNGVPFLCW 372 (462)
Q Consensus 326 ~~~~v~~~~~~pq~---~ll~~~~~~~~I~HgG----~~sv~eal~~GvP~l~~ 372 (462)
+.+++.+.+-+|++ ++|...++ |++-.= .-++.||..+|.|++.-
T Consensus 250 l~~rV~~lG~v~h~~Vr~vl~~G~I--FlntSlTEafc~~ivEAaScGL~VVsT 301 (426)
T KOG1111|consen 250 LQDRVVMLGTVPHDRVRDVLVRGDI--FLNTSLTEAFCMVIVEAASCGLPVVST 301 (426)
T ss_pred ccCceEEecccchHHHHHHHhcCcE--EeccHHHHHHHHHHHHHHhCCCEEEEe
Confidence 46889999999986 57878887 876432 23678899999999865
No 446
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=37.83 E-value=2.2e+02 Score=24.32 Aligned_cols=64 Identities=23% Similarity=0.294 Sum_probs=42.2
Q ss_pred CE-EEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCc---chHHHHHhhcCCCCCCCCeEEEEcCCC
Q 044266 5 PH-VLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDY---NHKRVVNALGQNNYIGDQIKLVSIPDG 69 (462)
Q Consensus 5 ~~-Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~---~~~~v~~~~~~~~~~~~~i~~~~i~~~ 69 (462)
.| |+|+..++.-|-.-+..+++.|++.|..|.+++-.. +.+.++....+. ....+-+|..+|.+
T Consensus 108 ~rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~~~~~~~~l~~~~~~~-~~~~~s~~~~~~~~ 175 (187)
T cd01452 108 QRIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGEIDDNTEKLTAFIDAV-NGKDGSHLVSVPPG 175 (187)
T ss_pred ceEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCCCCCCHHHHHHHHHHh-cCCCCceEEEeCCC
Confidence 36 567777777777778899999999999988888654 334443332221 11235677777754
No 447
>PRK05748 replicative DNA helicase; Provisional
Probab=37.72 E-value=1.8e+02 Score=28.88 Aligned_cols=42 Identities=19% Similarity=0.324 Sum_probs=33.8
Q ss_pred EEEEcCCCccChHHHHHHHHHHH-hCCCEEEEEeCCcchHHHH
Q 044266 7 VLAFPYPAQGHVIPLLEISQCLV-KHGVKVTFLNTDYNHKRVV 48 (462)
Q Consensus 7 Il~~~~~~~GH~~p~l~La~~L~-~rGh~Vt~~~~~~~~~~v~ 48 (462)
+++...|+.|=..-.+.+|...+ +.|+.|.|++..-..+.+.
T Consensus 206 ivIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~~l~ 248 (448)
T PRK05748 206 IIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAESLV 248 (448)
T ss_pred EEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHH
Confidence 56777889999999999999887 4699999999876655443
No 448
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=37.61 E-value=2.2e+02 Score=25.91 Aligned_cols=35 Identities=11% Similarity=0.204 Sum_probs=24.7
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCc
Q 044266 5 PHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDY 42 (462)
Q Consensus 5 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 42 (462)
.+-++++..+.| + -.++|+.|+++||+|.++.-..
T Consensus 6 ~~~~lITGASsG-I--G~~~A~~lA~~g~~liLvaR~~ 40 (265)
T COG0300 6 GKTALITGASSG-I--GAELAKQLARRGYNLILVARRE 40 (265)
T ss_pred CcEEEEECCCch-H--HHHHHHHHHHCCCEEEEEeCcH
Confidence 344555544433 2 3688999999999999998754
No 449
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=37.55 E-value=41 Score=34.31 Aligned_cols=38 Identities=21% Similarity=-0.018 Sum_probs=26.9
Q ss_pred ceEEEeCCCcc---hHHHHHHHcCCceEEEccchhHHHHHH
Q 044266 109 ITCVVADGSMG---WVMEVAEKMKLRRAAFWPAAAGLLALS 146 (462)
Q Consensus 109 ~Dlvi~D~~~~---~~~~~A~~lgiP~v~~~~~~~~~~~~~ 146 (462)
-.-||+..+.+ .++...++..+++.++++..++...-+
T Consensus 142 ~~~ViaHfHEWmaG~gll~lr~~~~~VaTvFTTHAT~lGR~ 182 (633)
T PF05693_consen 142 KPKVIAHFHEWMAGVGLLYLRKRKPDVATVFTTHATLLGRY 182 (633)
T ss_dssp SEEEEEEEESGGGTTHHHHHHHTT-SCEEEEEESS-HHHHH
T ss_pred CCcEEEEechHhHhHHHHHHhccCCCeeEEEEecccchhhH
Confidence 45666665544 577789999999999999999875543
No 450
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=37.45 E-value=1.3e+02 Score=30.17 Aligned_cols=34 Identities=32% Similarity=0.336 Sum_probs=26.1
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhC--CCEEEEEeCCcc
Q 044266 5 PHVLAFPYPAQGHVIPLLEISQCLVKH--GVKVTFLNTDYN 43 (462)
Q Consensus 5 ~~Il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~ 43 (462)
+|||++..+++.| +|++.|.+. |++|.++..+.+
T Consensus 1 mkVLviG~Ggreh-----al~~~l~~s~~g~~v~~~~g~~N 36 (486)
T PRK05784 1 MKVLLVGDGAREH-----ALAEALEKSTKGYKVYALSSYLN 36 (486)
T ss_pred CEEEEECCchhHH-----HHHHHHHhCCCCCEEEEEECCCC
Confidence 4899988888877 467778775 999998865443
No 451
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=37.33 E-value=42 Score=32.28 Aligned_cols=38 Identities=24% Similarity=0.245 Sum_probs=31.6
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcc
Q 044266 1 MLRRPHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYN 43 (462)
Q Consensus 1 ~~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 43 (462)
|..+.+|+++-.+-.| +..|..|+++|++|+++-....
T Consensus 1 ~~~~~~vvVIGgGi~G-----ls~A~~La~~G~~V~vie~~~~ 38 (387)
T COG0665 1 MSMKMDVVIIGGGIVG-----LSAAYYLAERGADVTVLEAGEA 38 (387)
T ss_pred CCCcceEEEECCcHHH-----HHHHHHHHHcCCEEEEEecCcc
Confidence 4567899999877777 8999999999999999986554
No 452
>PRK06835 DNA replication protein DnaC; Validated
Probab=37.32 E-value=59 Score=30.71 Aligned_cols=45 Identities=16% Similarity=0.174 Sum_probs=36.1
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH
Q 044266 5 PHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVN 49 (462)
Q Consensus 5 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~ 49 (462)
..++|+..++.|=..=+.++|++|.++|+.|.|++.+.....+..
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~ 228 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILRE 228 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHH
Confidence 457777777888888888999999999999999998776555543
No 453
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=37.16 E-value=50 Score=31.16 Aligned_cols=37 Identities=19% Similarity=0.134 Sum_probs=29.6
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCc
Q 044266 1 MLRRPHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDY 42 (462)
Q Consensus 1 ~~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 42 (462)
|-..+||.++-.|..| ..+|..|+++||+|+++....
T Consensus 1 ~~~~m~I~iIG~G~mG-----~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 1 MHHGMRVAVLGAGAWG-----TALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CCCCCeEEEECcCHHH-----HHHHHHHHHCCCeEEEEeCCH
Confidence 3445799999888777 467889999999999998753
No 454
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=36.86 E-value=38 Score=32.38 Aligned_cols=83 Identities=16% Similarity=0.219 Sum_probs=0.0
Q ss_pred CccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCccc-------ccCchhHHHHhcCCceeecccCccc---ccCCCCcc
Q 044266 279 SFTVFDKEQFQELASGLELTNRPFLWVVRPDITNDAI-------DAYPEGFQDRVATRRQMVGWAPQQK---VLTHPSIA 348 (462)
Q Consensus 279 s~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~-------~~~~~~~~~~~~~~v~~~~~~pq~~---ll~~~~~~ 348 (462)
|....+...+..++++++..+.++...+..+....+. ..-+.+...+-.-.+.+.+|+||.+ +|-.||+
T Consensus 188 slF~Ye~~~l~~ll~~~~~~~~pv~llvp~g~~~~~~~~~~~~~~~~~g~~~~~g~l~l~~lPF~~Q~~yD~LLw~cD~- 266 (374)
T PF10093_consen 188 SLFCYENAALASLLDAWAASPKPVHLLVPEGRALNSLAAWLGDALLQAGDSWQRGNLTLHVLPFVPQDDYDRLLWACDF- 266 (374)
T ss_pred EEEeCCchHHHHHHHHHhcCCCCeEEEecCCccHHHHHHHhccccccCccccccCCeEEEECCCCCHHHHHHHHHhCcc-
Q ss_pred cceeccCch------hhhhhhhcCCcee
Q 044266 349 CFLSHCGWN------STMEGVSNGVPFL 370 (462)
Q Consensus 349 ~~I~HgG~~------sv~eal~~GvP~l 370 (462)
| |..-|.++|+|.|
T Consensus 267 --------NfVRGEDSfVRAqwAgkPFv 286 (374)
T PF10093_consen 267 --------NFVRGEDSFVRAQWAGKPFV 286 (374)
T ss_pred --------ceEecchHHHHHHHhCCCce
No 455
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=36.84 E-value=76 Score=30.45 Aligned_cols=58 Identities=22% Similarity=0.265 Sum_probs=35.4
Q ss_pred CchhhhhhhhcCCceeccc---cccch------hhhHHhHhhhheeeEEeecCCCCccCHHHHHHHHHHHhcCHH
Q 044266 355 GWNSTMEGVSNGVPFLCWP---YFADQ------FLNESYICDIWKVGLRFNKNKNGIITREEIMKKVDQVLEDEN 420 (462)
Q Consensus 355 G~~sv~eal~~GvP~l~~P---~~~DQ------~~na~~v~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ll~~~~ 420 (462)
|..++..|+.+|.|+- +| .++|- -.|+-++...+-.... ..+.+++..+|.++++|++
T Consensus 252 ~a~~f~~sl~~g~~V~-lp~i~s~AdglaV~~Vg~~tf~~a~~~~d~vv-------vV~~~ei~aaI~~l~edek 318 (457)
T KOG1250|consen 252 GAHSFNASLKAGKPVT-LPKITSLADGLAVKTVGENTFELAQKLVDRVV-------VVEDDEIAAAILRLFEDEK 318 (457)
T ss_pred CcHHHHHHHhcCCeee-cccccchhcccccchhhHHHHHHHHhcCceEE-------EeccHHHHHHHHHHHHhhh
Confidence 4678888888888873 22 22221 1233333332122222 3688999999999998875
No 456
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=36.70 E-value=63 Score=26.37 Aligned_cols=71 Identities=10% Similarity=0.165 Sum_probs=47.4
Q ss_pred ccccccchhhhHHhHhhhheeeEEeecCCCCccCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHhHhhcCCCcHHHHHHH
Q 044266 371 CWPYFADQFLNESYICDIWKVGLRFNKNKNGIITREEIMKKVDQVLED-ENFKARALDLKETSLNSVREGGQSDKTFKNF 449 (462)
Q Consensus 371 ~~P~~~DQ~~na~~v~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ll~~-~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~ 449 (462)
..|....+..+|+.+.+. .-+ + ..-..+.+.+.+..|+.| |+-+-.+.+++..+.++ |......+.++
T Consensus 77 pyPWt~~~L~aa~el~ee-~ee--L-----s~deke~~~~sl~dL~~d~PkT~vA~~rfKk~~~K~---g~~v~~~~~dI 145 (158)
T PF10083_consen 77 PYPWTENALEAANELIEE-DEE--L-----SPDEKEQFKESLPDLTKDTPKTKVAATRFKKILSKA---GSIVGDAIRDI 145 (158)
T ss_pred CCchHHHHHHHHHHHHHH-hhc--C-----CHHHHHHHHhhhHHHhhcCCccHHHHHHHHHHHHHH---hHHHHHHHHHH
Confidence 368888888898888773 222 2 224668899999999986 56677777777777775 33334445444
Q ss_pred HHH
Q 044266 450 VQW 452 (462)
Q Consensus 450 ~~~ 452 (462)
+-+
T Consensus 146 lVd 148 (158)
T PF10083_consen 146 LVD 148 (158)
T ss_pred HHH
Confidence 433
No 457
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=36.55 E-value=2.8e+02 Score=26.89 Aligned_cols=42 Identities=17% Similarity=0.236 Sum_probs=30.3
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCC-CEEEEEeCCc-chHHHHHh
Q 044266 4 RPHVLAFPYPAQGHVIPLLEISQCLVKHG-VKVTFLNTDY-NHKRVVNA 50 (462)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~l~La~~L~~rG-h~Vt~~~~~~-~~~~v~~~ 50 (462)
+++|+++-.|..|+ .+|..|+++| ++|++++-.. ....+...
T Consensus 1 m~~ilviGaG~Vg~-----~va~~la~~~d~~V~iAdRs~~~~~~i~~~ 44 (389)
T COG1748 1 MMKILVIGAGGVGS-----VVAHKLAQNGDGEVTIADRSKEKCARIAEL 44 (389)
T ss_pred CCcEEEECCchhHH-----HHHHHHHhCCCceEEEEeCCHHHHHHHHhh
Confidence 35888877766664 5788999999 9999999764 34445443
No 458
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=36.53 E-value=3.1e+02 Score=24.35 Aligned_cols=46 Identities=17% Similarity=0.083 Sum_probs=35.0
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH
Q 044266 4 RPHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVN 49 (462)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~ 49 (462)
..-+++...|+.|-..-.+.++.+-+++|..|.|++.....+.+.+
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~~ 66 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRR 66 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHHH
Confidence 3456677778889888888887776689999999998876554433
No 459
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=36.28 E-value=50 Score=20.60 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=16.7
Q ss_pred CHHHHHHHHHHHhcC-HHHHHHHHH
Q 044266 404 TREEIMKKVDQVLED-ENFKARALD 427 (462)
Q Consensus 404 ~~~~l~~~i~~ll~~-~~~~~~a~~ 427 (462)
+++.|.+||..+.++ -.+++.|+.
T Consensus 1 tee~l~~Ai~~v~~g~~S~r~AA~~ 25 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGKMSIRKAAKK 25 (45)
T ss_dssp -HHHHHHHHHHHHTTSS-HHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 578899999999976 356665554
No 460
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=36.00 E-value=41 Score=31.49 Aligned_cols=43 Identities=7% Similarity=0.099 Sum_probs=34.1
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh
Q 044266 3 RRPHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNA 50 (462)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 50 (462)
+..+|.++.+|-+|.+ +|+.|.++||.|.+..-+.+.+..++.
T Consensus 51 ~tl~IaIIGfGnmGqf-----lAetli~aGh~li~hsRsdyssaa~~y 93 (480)
T KOG2380|consen 51 ATLVIAIIGFGNMGQF-----LAETLIDAGHGLICHSRSDYSSAAEKY 93 (480)
T ss_pred cceEEEEEecCcHHHH-----HHHHHHhcCceeEecCcchhHHHHHHh
Confidence 3457888888877755 689999999999999888866666665
No 461
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=35.81 E-value=2.6e+02 Score=23.24 Aligned_cols=111 Identities=19% Similarity=0.143 Sum_probs=59.4
Q ss_pred EEcCCCccChHHH-HHHHHHHHhCCCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcCCCCCC--------CC--CCC
Q 044266 9 AFPYPAQGHVIPL-LEISQCLVKHGVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIPDGMEP--------EG--DRN 77 (462)
Q Consensus 9 ~~~~~~~GH~~p~-l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~--------~~--~~~ 77 (462)
.+.+...+.+..+ -.+|..|.++|++|.=+........-... ..+....++.+... .. -.-
T Consensus 3 av~~~~~~~~d~lL~~~a~~L~~~G~rv~G~vQ~~~~~~~~~~--------~~m~l~dl~~G~~~~IsQ~LG~gs~gCrL 74 (159)
T PF10649_consen 3 AVVYDDGGDIDALLAAFAARLRARGVRVAGLVQRNTADGDGGR--------CDMDLRDLPSGRRIRISQDLGPGSRGCRL 74 (159)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccCCCCCCc--------cceEEEECCCCCEEEEeeccCCCCccccc
Confidence 3445556677764 56899999999999877765422111111 24555666543211 11 111
Q ss_pred CHHHHHHHHHHhccHHHHHHHHHHhhccCCCceEEEeCCCcc---------hHHHHHHHcCCceEEEccch
Q 044266 78 DLGMLTKTMVRVMPEKLEELIENINRLENEKITCVVADGSMG---------WVMEVAEKMKLRRAAFWPAA 139 (462)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~---------~~~~~A~~lgiP~v~~~~~~ 139 (462)
++. .+.+....+.......+|++|.+-|.- .....|-..|||+++..+..
T Consensus 75 D~~------------~La~A~~~l~~al~~~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V~~~ 133 (159)
T PF10649_consen 75 DPG------------ALAEASAALRRALAEGADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAVPPR 133 (159)
T ss_pred CHH------------HHHHHHHHHHHHHhcCCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEECHH
Confidence 111 122211222221115899999986543 12334666699999876543
No 462
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=35.71 E-value=72 Score=25.10 Aligned_cols=35 Identities=23% Similarity=0.331 Sum_probs=26.1
Q ss_pred EEEcCCC-ccChHHHHHHHHHHHhCCCEEEEEeCCc
Q 044266 8 LAFPYPA-QGHVIPLLEISQCLVKHGVKVTFLNTDY 42 (462)
Q Consensus 8 l~~~~~~-~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 42 (462)
+.+..|- .-.+.-.+-+...|.++|.+||+++++.
T Consensus 7 v~lGCPeiP~qissaiYls~klkkkgf~v~VaateA 42 (148)
T COG4081 7 VSLGCPEIPPQISSAIYLSHKLKKKGFDVTVAATEA 42 (148)
T ss_pred EEecCCCCCccchHHHHHHHHhhccCccEEEecCHh
Confidence 3444443 3556667888999999999999999864
No 463
>cd08783 Death_MALT1 Death domain similar to that found in Mucosa-associated lymphoid tissue-lymphoma-translocation gene 1. Death domain (DD) similar to that found in Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1). Malt1, together with Bcl10 (B-cell lymphoma 10), are the integral components of the CBM signalosome. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells) and with CARMA1 to form L-CBM (CBM complex in lymphoid immune cells), to mediate activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins
Probab=35.59 E-value=1.7e+02 Score=21.67 Aligned_cols=71 Identities=18% Similarity=0.085 Sum_probs=45.1
Q ss_pred chhhhHHhHhhhheeeEEeecCCCCccCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhHhhcCCCcHHHHHHHHHHHHhh
Q 044266 377 DQFLNESYICDIWKVGLRFNKNKNGIITREEIMKKVDQVLEDENFKARALDLKETSLNSVREGGQSDKTFKNFVQWIKAE 456 (462)
Q Consensus 377 DQ~~na~~v~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 456 (462)
|+..|..-.+. +|.+.++. +++.++.+.+.++++-..-= .+.+-+.+ .+.|...+.+-++++.|...
T Consensus 21 ~~~gWr~LAe~-lg~~~~fr------~S~~el~~cslkvl~p~gSP--sk~LL~~~----~~rg~Tv~~Ll~~L~~Mgh~ 87 (97)
T cd08783 21 DGKGWRKLAEL-AGSRGRFR------LSCLDLEQCSLKVLEPEGSP--SRSLLKLL----GERGCTVTELSEFLQAMEHT 87 (97)
T ss_pred ccCCHHHHHHH-HccCCccc------cCHHHHHHHHHHHhcCCCCc--hHHHHHHH----HHcCCcHHHHHHHHHHhhhH
Confidence 45556665555 57777554 79999999999999633111 12222333 33567778888888888765
Q ss_pred hccc
Q 044266 457 ASVQ 460 (462)
Q Consensus 457 ~~~~ 460 (462)
-.++
T Consensus 88 eAl~ 91 (97)
T cd08783 88 EALQ 91 (97)
T ss_pred HHHH
Confidence 5443
No 464
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=35.41 E-value=75 Score=32.39 Aligned_cols=40 Identities=23% Similarity=0.273 Sum_probs=28.3
Q ss_pred CCEEEEEcCC-------CccChHHHHH---HHHHHHhCCCEEEEEeCCcc
Q 044266 4 RPHVLAFPYP-------AQGHVIPLLE---ISQCLVKHGVKVTFLNTDYN 43 (462)
Q Consensus 4 ~~~Il~~~~~-------~~GH~~p~l~---La~~L~~rGh~Vt~~~~~~~ 43 (462)
+.++++.+.. --||+++.+. +||-++-+||+|.|+|....
T Consensus 4 ~~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDe 53 (558)
T COG0143 4 MKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDE 53 (558)
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCC
Confidence 4567666533 2399996553 56666679999999997764
No 465
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=35.32 E-value=60 Score=22.92 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCc
Q 044266 20 PLLEISQCLVKHGVKVTFLNTDY 42 (462)
Q Consensus 20 p~l~La~~L~~rGh~Vt~~~~~~ 42 (462)
.-+++|..|+++|.+||++....
T Consensus 10 ig~E~A~~l~~~g~~vtli~~~~ 32 (80)
T PF00070_consen 10 IGIELAEALAELGKEVTLIERSD 32 (80)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSS
T ss_pred HHHHHHHHHHHhCcEEEEEeccc
Confidence 45899999999999999999765
No 466
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=35.29 E-value=66 Score=29.18 Aligned_cols=36 Identities=17% Similarity=0.198 Sum_probs=30.8
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCC
Q 044266 6 HVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTD 41 (462)
Q Consensus 6 ~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 41 (462)
+|.+..=|+-|-..-...||..|+++|++|.++=-+
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~D 37 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGCD 37 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 677776778899999999999999999999988443
No 467
>PLN02240 UDP-glucose 4-epimerase
Probab=35.26 E-value=64 Score=30.56 Aligned_cols=34 Identities=18% Similarity=0.164 Sum_probs=23.9
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeC
Q 044266 3 RRPHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNT 40 (462)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 40 (462)
++.+|++ .|+.|.+ -..|++.|.++||+|+.+..
T Consensus 4 ~~~~vlI--tGatG~i--G~~l~~~L~~~g~~V~~~~~ 37 (352)
T PLN02240 4 MGRTILV--TGGAGYI--GSHTVLQLLLAGYKVVVIDN 37 (352)
T ss_pred CCCEEEE--ECCCChH--HHHHHHHHHHCCCEEEEEeC
Confidence 3456665 3555655 34568999999999999863
No 468
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=35.18 E-value=84 Score=26.12 Aligned_cols=39 Identities=15% Similarity=0.255 Sum_probs=31.5
Q ss_pred CEEE-EEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcc
Q 044266 5 PHVL-AFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYN 43 (462)
Q Consensus 5 ~~Il-~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 43 (462)
++|+ ++.+-..|-..=+-.|.+.|.++|++|..+=....
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~hh 41 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAHH 41 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEecCC
Confidence 4565 66666778888889999999999999999876543
No 469
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=35.15 E-value=2.7e+02 Score=23.30 Aligned_cols=90 Identities=18% Similarity=0.259 Sum_probs=51.9
Q ss_pred HHHHHHHHHhCCCEEEEEeCCcc-hHHHHHhhcCCCCCCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHhccHHHHHHHH
Q 044266 21 LLEISQCLVKHGVKVTFLNTDYN-HKRVVNALGQNNYIGDQIKLVSIPDGMEPEGDRNDLGMLTKTMVRVMPEKLEELIE 99 (462)
Q Consensus 21 ~l~La~~L~~rGh~Vt~~~~~~~-~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 99 (462)
+..|.+...++|..|.+++..+. .+.+.+... ...+++.+....++.... ....++++
T Consensus 35 ~~~ll~~~~~~~~~v~llG~~~~~~~~~~~~l~---~~yp~l~i~g~~~g~~~~------------------~~~~~i~~ 93 (171)
T cd06533 35 MPALLELAAQKGLRVFLLGAKPEVLEKAAERLR---ARYPGLKIVGYHHGYFGP------------------EEEEEIIE 93 (171)
T ss_pred HHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHH---HHCCCcEEEEecCCCCCh------------------hhHHHHHH
Confidence 44556666677999999987653 122111110 112578777644332221 11112556
Q ss_pred HHhhccCCCceEEEeCCCcc----hHHHHHHHcCCceEE
Q 044266 100 NINRLENEKITCVVADGSMG----WVMEVAEKMKLRRAA 134 (462)
Q Consensus 100 ~l~~~~~~~~Dlvi~D~~~~----~~~~~A~~lgiP~v~ 134 (462)
.+.. .+||+|++-...+ |.....+.++.+++.
T Consensus 94 ~I~~---~~pdiv~vglG~PkQE~~~~~~~~~l~~~v~~ 129 (171)
T cd06533 94 RINA---SGADILFVGLGAPKQELWIARHKDRLPVPVAI 129 (171)
T ss_pred HHHH---cCCCEEEEECCCCHHHHHHHHHHHHCCCCEEE
Confidence 6666 8999999998887 555666666555443
No 470
>PRK06180 short chain dehydrogenase; Provisional
Probab=35.15 E-value=73 Score=29.00 Aligned_cols=34 Identities=9% Similarity=-0.026 Sum_probs=23.6
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCc
Q 044266 6 HVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDY 42 (462)
Q Consensus 6 ~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 42 (462)
+.++++ |+.|.+ -.++++.|+++||+|..+....
T Consensus 5 ~~vlVt-Gasggi--G~~la~~l~~~G~~V~~~~r~~ 38 (277)
T PRK06180 5 KTWLIT-GVSSGF--GRALAQAALAAGHRVVGTVRSE 38 (277)
T ss_pred CEEEEe-cCCChH--HHHHHHHHHhCcCEEEEEeCCH
Confidence 344444 445544 5678889999999999887643
No 471
>COG0452 Dfp Phosphopantothenoylcysteine synthetase/decarboxylase [Coenzyme metabolism]
Probab=35.08 E-value=56 Score=31.73 Aligned_cols=47 Identities=15% Similarity=0.132 Sum_probs=36.1
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh
Q 044266 3 RRPHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNA 50 (462)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 50 (462)
.+.+|++...++.. .+..+.+++.|.++|++|.++.+......+.+.
T Consensus 3 ~~k~ill~v~gsia-ayk~~~l~r~L~~~ga~v~vvmt~~a~~fv~p~ 49 (392)
T COG0452 3 EGKRILLGVTGSIA-AYKSVELVRLLRRSGAEVRVVMTESARKFITPL 49 (392)
T ss_pred CCceEEEEecCchh-hhhHHHHHHHHhhCCCeeEEEcchhhhhhcCcc
Confidence 34578776655443 456699999999999999999999877777554
No 472
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=35.04 E-value=89 Score=24.22 Aligned_cols=37 Identities=14% Similarity=0.129 Sum_probs=33.0
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCc
Q 044266 6 HVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDY 42 (462)
Q Consensus 6 ~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 42 (462)
||++..-++.|-......+++.|+++|.+|.++-...
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4778888888999999999999999999999998876
No 473
>PLN02285 methionyl-tRNA formyltransferase
Probab=35.00 E-value=3.4e+02 Score=25.76 Aligned_cols=33 Identities=9% Similarity=0.021 Sum_probs=20.3
Q ss_pred CCceEEEeCCCcc-hHHHHHHHcCCceEEEccch
Q 044266 107 EKITCVVADGSMG-WVMEVAEKMKLRRAAFWPAA 139 (462)
Q Consensus 107 ~~~Dlvi~D~~~~-~~~~~A~~lgiP~v~~~~~~ 139 (462)
.+||++|+=.+.. ....+-+....-++-++++.
T Consensus 92 ~~~Dliv~~~~~~ilp~~~l~~~~~g~iNiHpSL 125 (334)
T PLN02285 92 LQPDLCITAAYGNILPQKFLDIPKLGTVNIHPSL 125 (334)
T ss_pred hCCCEEEhhHhhhhcCHHHHhhccCCEEEEeccc
Confidence 8999999775433 44444455555566665544
No 474
>PRK13604 luxD acyl transferase; Provisional
Probab=34.98 E-value=85 Score=29.28 Aligned_cols=35 Identities=9% Similarity=0.116 Sum_probs=28.5
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEe
Q 044266 5 PHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLN 39 (462)
Q Consensus 5 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~ 39 (462)
.+.+++..+..++-.-+..+|+.|+++|+.|.-+=
T Consensus 37 ~~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrfD 71 (307)
T PRK13604 37 NNTILIASGFARRMDHFAGLAEYLSSNGFHVIRYD 71 (307)
T ss_pred CCEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEec
Confidence 35677777888887779999999999999887653
No 475
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=34.86 E-value=66 Score=29.17 Aligned_cols=37 Identities=22% Similarity=0.218 Sum_probs=31.7
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCC
Q 044266 5 PHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTD 41 (462)
Q Consensus 5 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 41 (462)
|.|.+..=|+.|-..-...||..|+++|++|.++=.+
T Consensus 1 ~~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~D 37 (267)
T cd02032 1 MVLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCD 37 (267)
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 3677777778899999999999999999999988544
No 476
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=34.69 E-value=1.7e+02 Score=30.16 Aligned_cols=27 Identities=7% Similarity=0.305 Sum_probs=21.9
Q ss_pred cccceeccCch------hhhhhhhcCCceeccc
Q 044266 347 IACFLSHCGWN------STMEGVSNGVPFLCWP 373 (462)
Q Consensus 347 ~~~~I~HgG~~------sv~eal~~GvP~l~~P 373 (462)
..++++|.|-| .+.+|...++|+|++-
T Consensus 79 ~gv~~~t~GPG~~N~~~gl~~A~~~~~Pvl~It 111 (571)
T PRK07710 79 PGVVIATSGPGATNVVTGLADAMIDSLPLVVFT 111 (571)
T ss_pred CeEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 33488898865 6889999999999883
No 477
>PRK08939 primosomal protein DnaI; Reviewed
Probab=34.63 E-value=77 Score=29.60 Aligned_cols=45 Identities=22% Similarity=0.195 Sum_probs=36.5
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH
Q 044266 5 PHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVN 49 (462)
Q Consensus 5 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~ 49 (462)
..+++...++.|=.+=+.++|.+|+++|+.|+|+..+.+...+..
T Consensus 157 ~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~ 201 (306)
T PRK08939 157 KGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKN 201 (306)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHH
Confidence 357777778888888889999999999999999998766555544
No 478
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=34.59 E-value=6.1e+02 Score=27.23 Aligned_cols=40 Identities=15% Similarity=0.230 Sum_probs=31.1
Q ss_pred CCEEEEEcC--CCccChHHHHHHHHHHHhCCCEEEEEeCCcc
Q 044266 4 RPHVLAFPY--PAQGHVIPLLEISQCLVKHGVKVTFLNTDYN 43 (462)
Q Consensus 4 ~~~Il~~~~--~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 43 (462)
..|++.++. |+-|--.-...||..|+..|++|.++=.+..
T Consensus 545 ~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D~~ 586 (754)
T TIGR01005 545 EPEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDADGR 586 (754)
T ss_pred CceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 346665553 4668889999999999999999999866544
No 479
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=34.56 E-value=6 Score=20.75 Aligned_cols=17 Identities=24% Similarity=0.520 Sum_probs=13.5
Q ss_pred CchhhhhhhhcCCceec
Q 044266 355 GWNSTMEGVSNGVPFLC 371 (462)
Q Consensus 355 G~~sv~eal~~GvP~l~ 371 (462)
|.|+++-.++.|.|.++
T Consensus 1 gIGa~Lkvla~~LP~lI 17 (26)
T PF01372_consen 1 GIGAILKVLATGLPTLI 17 (26)
T ss_dssp -HHHHHHHHHTHHHHHH
T ss_pred ChhHHHHHHHhcChHHH
Confidence 67889999999988765
No 480
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=34.15 E-value=1.2e+02 Score=27.30 Aligned_cols=47 Identities=19% Similarity=0.230 Sum_probs=40.5
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh
Q 044266 4 RPHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNA 50 (462)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 50 (462)
..-+++.-.|+.|...-.++++...+++|..|.+++.....+.+.+.
T Consensus 23 g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~ 69 (260)
T COG0467 23 GSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLEN 69 (260)
T ss_pred CcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHHH
Confidence 44577888889999999999999999999999999999877666554
No 481
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=34.10 E-value=3.4e+02 Score=24.24 Aligned_cols=99 Identities=12% Similarity=0.184 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHHhCC-CEEEEEeCCcch---HHHHHhhcCCCCCCCCeEEEEcC-CCCCCCCCCCCHHHHHHHHHHhccH
Q 044266 18 VIPLLEISQCLVKHG-VKVTFLNTDYNH---KRVVNALGQNNYIGDQIKLVSIP-DGMEPEGDRNDLGMLTKTMVRVMPE 92 (462)
Q Consensus 18 ~~p~l~La~~L~~rG-h~Vt~~~~~~~~---~~v~~~~~~~~~~~~~i~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (462)
+.|..++.+.|..-| .+|.++++ +.. +.+.+.... .|+++..+- -+...+.. +.+.-..
T Consensus 105 tt~~~A~~~AL~alg~~RIalvTP-Y~~~v~~~~~~~l~~-----~G~eV~~~~~~~~~~~~~----------ia~i~p~ 168 (239)
T TIGR02990 105 VTPSSAAVDGLAALGVRRISLLTP-YTPETSRPMAQYFAV-----RGFEIVNFTCLGLTDDRE----------MARISPD 168 (239)
T ss_pred eCHHHHHHHHHHHcCCCEEEEECC-CcHHHHHHHHHHHHh-----CCcEEeeeeccCCCCCce----------eeecCHH
Confidence 457778888888888 66776665 321 222222211 177776653 22222111 1112233
Q ss_pred HHHHHHHHHhhccCCCceEEEeCCCcchHHHH----HHHcCCceEEE
Q 044266 93 KLEELIENINRLENEKITCVVADGSMGWVMEV----AEKMKLRRAAF 135 (462)
Q Consensus 93 ~~~~l~~~l~~~~~~~~Dlvi~D~~~~~~~~~----A~~lgiP~v~~ 135 (462)
.+.+++.++.. ..+|.|+..-....+..+ =+.+|+|++.-
T Consensus 169 ~i~~~~~~~~~---~~aDAifisCTnLrt~~vi~~lE~~lGkPVlsS 212 (239)
T TIGR02990 169 CIVEAALAAFD---PDADALFLSCTALRAATCAQRIEQAIGKPVVTS 212 (239)
T ss_pred HHHHHHHHhcC---CCCCEEEEeCCCchhHHHHHHHHHHHCCCEEEH
Confidence 34455555443 688998876444444444 35569999873
No 482
>PRK10586 putative oxidoreductase; Provisional
Probab=34.05 E-value=3.9e+02 Score=25.69 Aligned_cols=95 Identities=11% Similarity=0.050 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHhCC-CEEEEEeCCcchHHH----HHhhcCCCCCCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHhccHH
Q 044266 19 IPLLEISQCLVKHG-VKVTFLNTDYNHKRV----VNALGQNNYIGDQIKLVSIPDGMEPEGDRNDLGMLTKTMVRVMPEK 93 (462)
Q Consensus 19 ~p~l~La~~L~~rG-h~Vt~~~~~~~~~~v----~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (462)
..+-.|++.+.+.| .++.+++.+...+.. ...... .++.+..+....+ .+.
T Consensus 20 ga~~~l~~~~~~~g~~~~lvv~g~~~~~~~~~~~~~~l~~-----~~~~~~~~~g~~~-------------------~~~ 75 (362)
T PRK10586 20 GSIDHLHDFFTDEQLSRAVWIYGERAIAAAQPYLPPAFEL-----PGAKHILFRGHCS-------------------ESD 75 (362)
T ss_pred CHHHHHHHHHHhcCCCeEEEEEChHHHHHHHHHHHHHHHH-----cCCeEEEeCCCCC-------------------HHH
Confidence 46678888888877 789998886654333 221111 1555544332211 122
Q ss_pred HHHHHHHHhhccCCCceEEEeCCCc-c--hHHHHHHHcCCceEEEccchhH
Q 044266 94 LEELIENINRLENEKITCVVADGSM-G--WVMEVAEKMKLRRAAFWPAAAG 141 (462)
Q Consensus 94 ~~~l~~~l~~~~~~~~Dlvi~D~~~-~--~~~~~A~~lgiP~v~~~~~~~~ 141 (462)
++++.+.. . .+.|+||.=... . .+..+|...++|++.+-|...+
T Consensus 76 v~~l~~~~-~---~~~d~iiavGGGs~iD~aK~~a~~~~~p~i~vPT~a~t 122 (362)
T PRK10586 76 VAQLAAAS-G---DDRQVVIGVGGGALLDTAKALARRLGLPFVAIPTIAAT 122 (362)
T ss_pred HHHHHHHh-c---cCCCEEEEecCcHHHHHHHHHHhhcCCCEEEEeCCccc
Confidence 22332221 1 467999954432 2 5667777889999998776654
No 483
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=34.00 E-value=64 Score=28.41 Aligned_cols=33 Identities=9% Similarity=-0.003 Sum_probs=24.6
Q ss_pred CCceEEEeCCCc--chHHHHHHHcCCceEEEccch
Q 044266 107 EKITCVVADGSM--GWVMEVAEKMKLRRAAFWPAA 139 (462)
Q Consensus 107 ~~~Dlvi~D~~~--~~~~~~A~~lgiP~v~~~~~~ 139 (462)
.+||+||..... .....-....++|++.+....
T Consensus 59 l~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~ 93 (238)
T PF01497_consen 59 LKPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSS 93 (238)
T ss_dssp T--SEEEEETTSSCHHHHHHHHHTTSEEEEESSTT
T ss_pred CCCCEEEEeccccchHHHHHHhcccceEEEeeccc
Confidence 699999988777 355666778899999987765
No 484
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=33.96 E-value=2.7e+02 Score=22.98 Aligned_cols=25 Identities=16% Similarity=0.266 Sum_probs=19.9
Q ss_pred HHHHHHHHHhCCCEEEEEeCCcchH
Q 044266 21 LLEISQCLVKHGVKVTFLNTDYNHK 45 (462)
Q Consensus 21 ~l~La~~L~~rGh~Vt~~~~~~~~~ 45 (462)
...+.+.|.++|+.+.++|......
T Consensus 90 ~~~~l~~l~~~g~~~~i~Tn~~~~~ 114 (183)
T TIGR01509 90 VEPLLEALRARGKKLALLTNSPRDH 114 (183)
T ss_pred HHHHHHHHHHCCCeEEEEeCCchHH
Confidence 5667788989999999999866543
No 485
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=33.92 E-value=3.9e+02 Score=25.40 Aligned_cols=96 Identities=22% Similarity=0.174 Sum_probs=53.0
Q ss_pred HHHHHHHHHhCCCEEEEEeCCcch----HHHHHhhcCCCCCCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHhccHHHHH
Q 044266 21 LLEISQCLVKHGVKVTFLNTDYNH----KRVVNALGQNNYIGDQIKLVSIPDGMEPEGDRNDLGMLTKTMVRVMPEKLEE 96 (462)
Q Consensus 21 ~l~La~~L~~rGh~Vt~~~~~~~~----~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (462)
.-.|++.+.+.|-+|.+++.+... +.+.+.... .++.+..+.. ...+. ....+.+
T Consensus 11 ~~~l~~~~~~~~~r~liv~d~~~~~~~~~~v~~~l~~-----~~~~~~~~~~-~~~~p---------------~~~~v~~ 69 (345)
T cd08171 11 YKKIPEVCEKYGKKVVVIGGKTALAAAKDKIKAALEQ-----SGIEITDFIW-YGGES---------------TYENVER 69 (345)
T ss_pred HHHHHHHHHhcCCEEEEEeCHHHHHHHHHHHHHHHHH-----CCCeEEEEEe-cCCCC---------------CHHHHHH
Confidence 456777777778888888876432 233332211 1454433221 11111 1122233
Q ss_pred HHHHHhhccCCCceEEEeCCCcc---hHHHHHHHcCCceEEEccchh
Q 044266 97 LIENINRLENEKITCVVADGSMG---WVMEVAEKMKLRRAAFWPAAA 140 (462)
Q Consensus 97 l~~~l~~~~~~~~Dlvi~D~~~~---~~~~~A~~lgiP~v~~~~~~~ 140 (462)
..+..++ .++|+||.=.... .+..+|..+++|++.+-|...
T Consensus 70 ~~~~~~~---~~~d~iiavGGGs~~D~aK~ia~~~~~p~i~VPTt~g 113 (345)
T cd08171 70 LKKNPAV---QEADMIFAVGGGKAIDTVKVLADKLGKPVFTFPTIAS 113 (345)
T ss_pred HHHHHhh---cCCCEEEEeCCcHHHHHHHHHHHHcCCCEEEecCccc
Confidence 3333333 8999999654333 566777778999999877554
No 486
>PRK09739 hypothetical protein; Provisional
Probab=33.84 E-value=1.1e+02 Score=26.27 Aligned_cols=38 Identities=13% Similarity=0.019 Sum_probs=23.2
Q ss_pred CCCEEEEEcCCCc--cChHH-HHHHHHHHHhCCCEEEEEeC
Q 044266 3 RRPHVLAFPYPAQ--GHVIP-LLEISQCLVKHGVKVTFLNT 40 (462)
Q Consensus 3 ~~~~Il~~~~~~~--GH~~p-~l~La~~L~~rGh~Vt~~~~ 40 (462)
+++||+++..... |.-.. .-.+++.|.++||+|+++--
T Consensus 2 ~mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v~~~dL 42 (199)
T PRK09739 2 QSMRIYLVWAHPRHDSLTAKVAEAIHQRAQERGHQVEELDL 42 (199)
T ss_pred CCceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEh
Confidence 3578887654433 22222 33456667778999997753
No 487
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=33.81 E-value=94 Score=28.78 Aligned_cols=39 Identities=5% Similarity=0.108 Sum_probs=28.0
Q ss_pred CCCCEEEEEcCCCccC----hHHHHHHHHHHHhCCCEEEEEeC
Q 044266 2 LRRPHVLAFPYPAQGH----VIPLLEISQCLVKHGVKVTFLNT 40 (462)
Q Consensus 2 ~~~~~Il~~~~~~~GH----~~p~l~La~~L~~rGh~Vt~~~~ 40 (462)
|++.||+++..|..+- +.-.-.++++|.+.||+|.++..
T Consensus 1 ~~~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~ 43 (296)
T PRK14569 1 MKNEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDA 43 (296)
T ss_pred CCCcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 1477998887554332 44567889999999999988754
No 488
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=33.74 E-value=59 Score=28.28 Aligned_cols=105 Identities=16% Similarity=0.121 Sum_probs=62.8
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhcCCCCCCCCeEEEEcCCCCCCCCCCCCHHHHHHH
Q 044266 6 HVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHKRVVNALGQNNYIGDQIKLVSIPDGMEPEGDRNDLGMLTKT 85 (462)
Q Consensus 6 ~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~ 85 (462)
=|++...|+.|-....-+||++|.+++|+|..++..... ++.- .+. ..-..+.++.
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~---------------~i~~---DEs------lpi~ke~yre 58 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLR---------------GILW---DES------LPILKEVYRE 58 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhh---------------heec---ccc------cchHHHHHHH
Confidence 356777889999999999999999999999877654322 1210 110 1111222222
Q ss_pred HHHhccHHHHHHHHHHhhccCCCceEEEeCCCcch------HHHHHHHcCCceEEEccchhHH
Q 044266 86 MVRVMPEKLEELIENINRLENEKITCVVADGSMGW------VMEVAEKMKLRRAAFWPAAAGL 142 (462)
Q Consensus 86 ~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~~------~~~~A~~lgiP~v~~~~~~~~~ 142 (462)
+.. +...+ ++.+. .+--+||+|...+. ....|..+..++.++....+..
T Consensus 59 s~~--ks~~r-lldSa-----lkn~~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~plD 113 (261)
T COG4088 59 SFL--KSVER-LLDSA-----LKNYLVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRTPLD 113 (261)
T ss_pred HHH--HHHHH-HHHHH-----hcceEEEEecccHHHHHHHHHHHHHHhcCCceEEEEEccCHH
Confidence 221 12222 33221 34458999987662 2356888899998876655543
No 489
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=33.73 E-value=85 Score=26.60 Aligned_cols=37 Identities=19% Similarity=0.181 Sum_probs=27.0
Q ss_pred HHHHHHhhccCCCceEEEeCC--CcchHHHHHHHcCCceEEE
Q 044266 96 ELIENINRLENEKITCVVADG--SMGWVMEVAEKMKLRRAAF 135 (462)
Q Consensus 96 ~l~~~l~~~~~~~~Dlvi~D~--~~~~~~~~A~~lgiP~v~~ 135 (462)
.+.+..+. .++|.|++=. .++.+..+|.++|+|++.+
T Consensus 44 ~~~~~~~~---~~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~v 82 (179)
T COG0503 44 ELAERYKD---DGIDKIVTIEARGIPLAAAVALELGVPFVPV 82 (179)
T ss_pred HHHHHhcc---cCCCEEEEEccccchhHHHHHHHhCCCEEEE
Confidence 34444444 7899998533 4557889999999999985
No 490
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=33.72 E-value=30 Score=28.88 Aligned_cols=24 Identities=29% Similarity=0.355 Sum_probs=17.2
Q ss_pred hhhheeeEEeecCCCCccCHHHHHHHHHHHhc
Q 044266 386 CDIWKVGLRFNKNKNGIITREEIMKKVDQVLE 417 (462)
Q Consensus 386 ~~~~g~g~~~~~~~~~~~~~~~l~~~i~~ll~ 417 (462)
+++.|||+.+ |++++.++|.+.++
T Consensus 108 e~~cGVGV~V--------T~E~I~~~V~~~i~ 131 (164)
T PF04558_consen 108 EKACGVGVVV--------TPEQIEAAVEKYIE 131 (164)
T ss_dssp HHTTTTT------------HHHHHHHHHHHHH
T ss_pred HHHcCCCeEE--------CHHHHHHHHHHHHH
Confidence 4447999998 89999999999995
No 491
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=33.60 E-value=3.2e+02 Score=26.54 Aligned_cols=44 Identities=5% Similarity=0.065 Sum_probs=34.5
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHh----CCCEEEEEeCCcchHHHH
Q 044266 5 PHVLAFPYPAQGHVIPLLEISQCLVK----HGVKVTFLNTDYNHKRVV 48 (462)
Q Consensus 5 ~~Il~~~~~~~GH~~p~l~La~~L~~----rGh~Vt~~~~~~~~~~v~ 48 (462)
..|+|+...+.|-..-...||..|.. +|+.|.+++.+.++....
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~ 222 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAK 222 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHH
Confidence 35667777788999999999998873 589999999988754433
No 492
>PRK08818 prephenate dehydrogenase; Provisional
Probab=33.56 E-value=4.5e+02 Score=25.38 Aligned_cols=108 Identities=15% Similarity=0.069 Sum_probs=56.7
Q ss_pred CCCCCEEEEEcC-CCccChHHHHHHHHHHHhC-CCEEEEEeCCcc-hHHHHHhhcCCCCCCCCeEEEEcCCCCCCCCCCC
Q 044266 1 MLRRPHVLAFPY-PAQGHVIPLLEISQCLVKH-GVKVTFLNTDYN-HKRVVNALGQNNYIGDQIKLVSIPDGMEPEGDRN 77 (462)
Q Consensus 1 ~~~~~~Il~~~~-~~~GH~~p~l~La~~L~~r-Gh~Vt~~~~~~~-~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~ 77 (462)
|-.+.+|+++-. |..|- .+|+.|.++ |++|+-+-.... .....+... ...+-+...|.
T Consensus 1 ~~~~~~I~IIGl~GliGg-----slA~alk~~~~~~V~g~D~~d~~~~~~~~~v~-----~aDlVilavPv--------- 61 (370)
T PRK08818 1 MIAQPVVGIVGSAGAYGR-----WLARFLRTRMQLEVIGHDPADPGSLDPATLLQ-----RADVLIFSAPI--------- 61 (370)
T ss_pred CCCCCEEEEECCCCHHHH-----HHHHHHHhcCCCEEEEEcCCccccCCHHHHhc-----CCCEEEEeCCH---------
Confidence 445678999887 66664 467788764 888876644210 000011000 01344444331
Q ss_pred CHHHHHHHHHHhccHHHHHHHHHHhhccCCCceEEEeCCCcc--hHHHHHHHcCCceEEEccchh
Q 044266 78 DLGMLTKTMVRVMPEKLEELIENINRLENEKITCVVADGSMG--WVMEVAEKMKLRRAAFWPAAA 140 (462)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Dlvi~D~~~~--~~~~~A~~lgiP~v~~~~~~~ 140 (462)
....+.++++...... .+++++|+|.... .....+...+.++|..+|+..
T Consensus 62 ----------~~~~~~l~~l~~~~~~---l~~~~iVtDVgSvK~~i~~~~~~~~~~fVG~HPMaG 113 (370)
T PRK08818 62 ----------RHTAALIEEYVALAGG---RAAGQLWLDVTSIKQAPVAAMLASQAEVVGLHPMTA 113 (370)
T ss_pred ----------HHHHHHHHHHhhhhcC---CCCCeEEEECCCCcHHHHHHHHhcCCCEEeeCCCCC
Confidence 1112222222222111 5899999997766 344455566777787777654
No 493
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=33.36 E-value=67 Score=26.68 Aligned_cols=51 Identities=18% Similarity=0.260 Sum_probs=35.3
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcc--hHHHHHhhcCCCCCCCCeEEEEcCC
Q 044266 4 RPHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYN--HKRVVNALGQNNYIGDQIKLVSIPD 68 (462)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~--~~~v~~~~~~~~~~~~~i~~~~i~~ 68 (462)
..+|.++-++++||.. |.-|++.|++|++...+.. .+..++. |++..++.+
T Consensus 4 ~k~IAViGyGsQG~a~-----AlNLrDSG~~V~Vglr~~s~s~~~A~~~---------Gf~v~~~~e 56 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAH-----ALNLRDSGVNVIVGLREGSASWEKAKAD---------GFEVMSVAE 56 (165)
T ss_dssp TSEEEEES-SHHHHHH-----HHHHHHCC-EEEEEE-TTCHHHHHHHHT---------T-ECCEHHH
T ss_pred CCEEEEECCChHHHHH-----HHHHHhCCCCEEEEecCCCcCHHHHHHC---------CCeeccHHH
Confidence 4689999999999865 6779999999999887664 4445554 887766554
No 494
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=33.24 E-value=1.8e+02 Score=28.69 Aligned_cols=26 Identities=19% Similarity=0.386 Sum_probs=21.3
Q ss_pred cccceeccCch------hhhhhhhcCCceecc
Q 044266 347 IACFLSHCGWN------STMEGVSNGVPFLCW 372 (462)
Q Consensus 347 ~~~~I~HgG~~------sv~eal~~GvP~l~~ 372 (462)
.+++++|.|-| .+.+|...++|+|++
T Consensus 64 ~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i 95 (432)
T TIGR00173 64 PVAVVCTSGTAVANLLPAVIEASYSGVPLIVL 95 (432)
T ss_pred CEEEEECCcchHhhhhHHHHHhcccCCcEEEE
Confidence 33488888844 788999999999999
No 495
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=33.09 E-value=1.1e+02 Score=23.77 Aligned_cols=39 Identities=8% Similarity=-0.023 Sum_probs=28.7
Q ss_pred CCEEEEEcCCCccChHHHH---HHHHHHHhCCCEEEEEeCCc
Q 044266 4 RPHVLAFPYPAQGHVIPLL---EISQCLVKHGVKVTFLNTDY 42 (462)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~l---~La~~L~~rGh~Vt~~~~~~ 42 (462)
+++|++++....|-...++ .|.++-.++||+|.+=+...
T Consensus 2 ~mkivaVtacp~GiAht~lAAeaL~kAA~~~G~~i~VE~qg~ 43 (114)
T PRK10427 2 MAYLVAVTACVSGVAHTYMAAERLEKLCQLEKWGVKIETQGA 43 (114)
T ss_pred CceEEEEeeCCCcHHHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 3689988877777777665 45566667999999777654
No 496
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=33.08 E-value=86 Score=27.17 Aligned_cols=35 Identities=11% Similarity=0.124 Sum_probs=26.6
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcc
Q 044266 4 RPHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYN 43 (462)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 43 (462)
..+|+++..|..| ...++.|.+.|++||++++...
T Consensus 10 ~k~vLVIGgG~va-----~~ka~~Ll~~ga~V~VIs~~~~ 44 (202)
T PRK06718 10 NKRVVIVGGGKVA-----GRRAITLLKYGAHIVVISPELT 44 (202)
T ss_pred CCEEEEECCCHHH-----HHHHHHHHHCCCeEEEEcCCCC
Confidence 4578887665444 5678999999999999986543
No 497
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=33.00 E-value=50 Score=27.38 Aligned_cols=33 Identities=18% Similarity=0.193 Sum_probs=24.4
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCC
Q 044266 4 RPHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTD 41 (462)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 41 (462)
|+||.|+-.+..| ..+|+.|.++||+|++....
T Consensus 1 m~~Ig~IGlG~mG-----~~~a~~L~~~g~~v~~~d~~ 33 (163)
T PF03446_consen 1 MMKIGFIGLGNMG-----SAMARNLAKAGYEVTVYDRS 33 (163)
T ss_dssp -BEEEEE--SHHH-----HHHHHHHHHTTTEEEEEESS
T ss_pred CCEEEEEchHHHH-----HHHHHHHHhcCCeEEeeccc
Confidence 3588888877666 47899999999999988643
No 498
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=32.99 E-value=4.5e+02 Score=25.21 Aligned_cols=97 Identities=18% Similarity=0.182 Sum_probs=52.0
Q ss_pred HHHHHHHHHhCC-CEEEEEeCCcchH-----HHHHhhcCCCCCCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHhccHHH
Q 044266 21 LLEISQCLVKHG-VKVTFLNTDYNHK-----RVVNALGQNNYIGDQIKLVSIPDGMEPEGDRNDLGMLTKTMVRVMPEKL 94 (462)
Q Consensus 21 ~l~La~~L~~rG-h~Vt~~~~~~~~~-----~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (462)
+-.|+..|.+.| .+|.+++.....+ .+...... .++.+..+.. .... .....+
T Consensus 11 l~~l~~~l~~~~~~~~lvv~~~~~~~~~~~~~v~~~L~~-----~~~~~~~~~~-~~~~---------------p~~~~v 69 (370)
T cd08551 11 IEKLGEEIKNLGGRKALIVTDPGLVKTGVLDKVIDSLKE-----AGIEVVIFDG-VEPN---------------PTLSNV 69 (370)
T ss_pred HHHHHHHHHHcCCCeEEEEeCcchhhCccHHHHHHHHHH-----cCCeEEEECC-CCCC---------------CCHHHH
Confidence 456777787766 7888887764332 33333211 1455544332 1111 112334
Q ss_pred HHHHHHHhhccCCCceEEEeCCCcc---hHHHHHHHc------------------CCceEEEccchhH
Q 044266 95 EELIENINRLENEKITCVVADGSMG---WVMEVAEKM------------------KLRRAAFWPAAAG 141 (462)
Q Consensus 95 ~~l~~~l~~~~~~~~Dlvi~D~~~~---~~~~~A~~l------------------giP~v~~~~~~~~ 141 (462)
.++++.++. .++|+||.=.... .+..+|..+ ++|++.+-|...+
T Consensus 70 ~~~~~~~~~---~~~d~IiaiGGGs~~D~AK~va~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt~gt 134 (370)
T cd08551 70 DAAVAAYRE---EGCDGVIAVGGGSVLDTAKAIALLATNPGDIWDYEGGKPVIKPALPLIAIPTTAGT 134 (370)
T ss_pred HHHHHHHHh---cCCCEEEEeCCchHHHHHHHHHHHHhCCCcHHHHhCcccccCCCCCEEEecCCCcc
Confidence 455555555 7899999554322 344445544 7888877665543
No 499
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=32.97 E-value=2.4e+02 Score=27.65 Aligned_cols=36 Identities=11% Similarity=-0.036 Sum_probs=26.1
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCCcchH
Q 044266 5 PHVLAFPYPAQGHVIPLLEISQCLVKHGVKVTFLNTDYNHK 45 (462)
Q Consensus 5 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 45 (462)
+||+++-.+..+ ..|++++.+-|+.++++..+.+..
T Consensus 1 ~kiliiG~G~~~-----~~l~~~~~~~~~~~~~~~~~~~~~ 36 (423)
T TIGR00877 1 MKVLVIGNGGRE-----HALAWKLAQSPLVKYVYVAPGNAG 36 (423)
T ss_pred CEEEEECCChHH-----HHHHHHHHhCCCccEEEEECCCHH
Confidence 488888776664 467888888888888887766543
No 500
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=32.93 E-value=4.4e+02 Score=25.77 Aligned_cols=138 Identities=13% Similarity=0.156 Sum_probs=74.8
Q ss_pred CcEEEEeccCccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCcccccC-chhHHHHhcCC-ceeecc-------cCccc
Q 044266 270 NSVIYVAFGSFTVFDKEQFQELASGLELTNRPFLWVVRPDITNDAIDAY-PEGFQDRVATR-RQMVGW-------APQQK 340 (462)
Q Consensus 270 ~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~-v~~~~~-------~pq~~ 340 (462)
+.+++.-.||.... ....+++.|.+.++++-++.... ...-+ +..+ +...++ |+..-| +.|-.
T Consensus 7 k~IllgvTGsiaa~---k~~~lv~~L~~~g~~V~vv~T~~----A~~fi~~~~l-~~l~~~~V~~~~~~~~~~~~~~hi~ 78 (399)
T PRK05579 7 KRIVLGVSGGIAAY---KALELVRRLRKAGADVRVVMTEA----AKKFVTPLTF-QALSGNPVSTDLWDPAAEAAMGHIE 78 (399)
T ss_pred CeEEEEEeCHHHHH---HHHHHHHHHHhCCCEEEEEECHh----HHHHHhHHHH-HHhhCCceEccccccccCCCcchhh
Confidence 44777777776432 23446677777788876666543 11111 1122 222333 322122 12333
Q ss_pred ccCCCCcccceeccCchhhhh-------------hhhcCCceecccccc----c---hhhhHHhHhhhheeeEEeec---
Q 044266 341 VLTHPSIACFLSHCGWNSTME-------------GVSNGVPFLCWPYFA----D---QFLNESYICDIWKVGLRFNK--- 397 (462)
Q Consensus 341 ll~~~~~~~~I~HgG~~sv~e-------------al~~GvP~l~~P~~~----D---Q~~na~~v~~~~g~g~~~~~--- 397 (462)
+...+|+ .+|.-+=+||+.. ++.+++|++++|-.. + ...|..++.+ +|+-+.-+.
T Consensus 79 l~~~aD~-~vVaPaTaNtlaKiA~GiaDnllt~~~la~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~-~G~~ii~P~~g~ 156 (399)
T PRK05579 79 LAKWADL-VLIAPATADLIAKLAHGIADDLLTTTLLATTAPVLVAPAMNTQMWENPATQRNLATLRS-RGVEIIGPASGR 156 (399)
T ss_pred cccccCE-EEEeeCCHHHHHHHHcccCCcHHHHHHHhcCCCEEEEeCCChhHcCCHHHHHHHHHHHH-CCCEEECCCCcc
Confidence 4433443 3455555554332 356699999999432 2 3457888888 487765431
Q ss_pred ------CCCCccCHHHHHHHHHHHhc
Q 044266 398 ------NKNGIITREEIMKKVDQVLE 417 (462)
Q Consensus 398 ------~~~~~~~~~~l~~~i~~ll~ 417 (462)
...+-.+++++...+.+.+.
T Consensus 157 la~~~~g~gr~~~~~~I~~~~~~~~~ 182 (399)
T PRK05579 157 LACGDVGPGRMAEPEEIVAAAERALS 182 (399)
T ss_pred ccCCCcCCCCCCCHHHHHHHHHHHhh
Confidence 11234688999999988874
Done!