BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044268
(138 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4D90|A Chain A, Crystal Structure Of Del-1 Egf Domains
pdb|4D90|B Chain B, Crystal Structure Of Del-1 Egf Domains
Length = 143
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 5 DEEMTMCDGTNEFWCEHGGKCE--EIVQGEM---YDCKCPAGYAGEHCEHSGTPCGQIFC 59
+EE T C +GG CE E +G+ Y CKCP G+ G HC+H+ C C
Sbjct: 46 EEEPTSAGPCTPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPC 105
Query: 60 FHEAQCLALSQVHNACDCPPDWKG 83
+ C L + +C+CP ++ G
Sbjct: 106 KNGGICTDLVANY-SCECPGEFMG 128
Score = 26.6 bits (57), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 19 CEHGGKCEEIVQGEMYDCKCPAGYAGEHCEH 49
C++GG C ++V Y C+CP + G +C++
Sbjct: 105 CKNGGICTDLVAN--YSCECPGEFMGRNCQY 133
>pdb|1GK5|A Chain A, Solution Structure The MegfTGFALPHA44-50 Chimeric Growth
Factor
Length = 49
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 11 CDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHS 50
C + + +C +GG C I + Y C C GY+G+ CEH+
Sbjct: 6 CPSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCEHA 45
>pdb|2VJ2|A Chain A, Human Jagged-1, Domains Dsl And Egfs1-3
pdb|2VJ2|B Chain B, Human Jagged-1, Domains Dsl And Egfs1-3
Length = 169
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 1 GKFCDEEMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCE 48
G+ CD+++ C GT++ C +GG C + Y C CP GY+G +CE
Sbjct: 124 GQLCDKDLNYC-GTHQP-CLNGGTCSNTGP-DKYQCSCPEGYSGPNCE 168
>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13
Length = 135
Score = 31.2 bits (69), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 19 CEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGTPCGQIFCFHEAQCLALSQVHN-ACDC 77
CEH GKC + ++C+C GY G CE C C ++A C L Q+ C C
Sbjct: 15 CEHAGKCINTLGS--FECQCLQGYTGPRCEIDVNECVSNPCQNDATC--LDQIGEFQCIC 70
Query: 78 PPDWKG 83
P ++G
Sbjct: 71 MPGYEG 76
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 34 YDCKCPAGYAGEHCEHSGTPCGQIFCFHEAQCL-ALSQVHNACDCPPDWKG 83
+ C C GY G HCE + C C H +CL +++ C+CP + G
Sbjct: 66 FQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQ--CECPTGFTG 114
>pdb|1P9J|A Chain A, Solution Structure And Dynamics Of The EgfTGF-Alpha
Chimera T1e
Length = 54
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 11 CDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHS 50
C +++ +C H G C I + Y C C GY GE C++
Sbjct: 8 CPLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQYR 47
>pdb|1TPG|A Chain A, F1-G Module Pair Residues 1-91 (C83s) Of Tissue-Type
Plasminogen Activator (T-Pa) (Nmr, 298k, Ph2.95,
Representative Structure)
Length = 91
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 19 CEHGGKCEEIVQGEMYDCKCPAGYAGEHCE 48
C +GG C++ + + C+CP G+AG+ CE
Sbjct: 56 CFNGGTCQQALYFSDFVCQCPEGFAGKSCE 85
>pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region
Length = 116
Score = 30.8 bits (68), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 19 CEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGTPCGQIFCFHEAQCLALSQVHN-ACDC 77
CEH GKC + ++C+C GY G CE C C ++A C L Q+ C C
Sbjct: 13 CEHAGKCINTLGS--FECQCLQGYTGPRCEIDVNECVSNPCQNDATC--LDQIGEFQCIC 68
Query: 78 PPDWKG 83
P ++G
Sbjct: 69 MPGYEG 74
Score = 30.4 bits (67), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 34 YDCKCPAGYAGEHCEHSGTPCGQIFCFHEAQCL-ALSQVHNACDCPPDWKG 83
+ C C GY G HCE + C C H +CL +++ C+CP + G
Sbjct: 64 FQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQ--CECPTGFTG 112
>pdb|1IVO|C Chain C, Crystal Structure Of The Complex Of Human Epidermal
Growth Factor And Receptor Extracellular Domains.
pdb|1IVO|D Chain D, Crystal Structure Of The Complex Of Human Epidermal
Growth Factor And Receptor Extracellular Domains.
pdb|1NQL|B Chain B, Structure Of The Extracellular Domain Of Human Epidermal
Growth Factor (egf) Receptor In An Inactive (low Ph)
Complex With Egf.
pdb|2KV4|A Chain A, Egf
Length = 53
Score = 30.8 bits (68), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 11 CDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHS 50
C +++ +C H G C I + Y C C GY GE C++
Sbjct: 6 CPLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQYR 45
>pdb|1EGF|A Chain A, Solution Structure Of Murine Epidermal Growth Factor
Determined By Nmr Spectroscopy And Refined By Energy
Minimization With Restraints
pdb|1EPG|A Chain A, Three-Dimensional Nuclear Magnetic Resonance Structures
Of Mouse Epidermal Growth Factor In Acidic And
Physiological Ph Solutions
pdb|1EPH|A Chain A, Three-Dimensional Nuclear Magnetic Resonance Structures
Of Mouse Epidermal Growth Factor In Acidic And
Physiological Ph Solutions
pdb|1EPI|A Chain A, Three-Dimensional Nuclear Magnetic Resonance Structures
Of Mouse Epidermal Growth Factor In Acidic And
Physiological Ph Solutions
pdb|1EPJ|A Chain A, Three-Dimensional Nuclear Magnetic Resonance Structures
Of Mouse Epidermal Growth Factor In Acidic And
Physiological Ph Solutions
pdb|3EGF|A Chain A, Solution Structure Of Murine Epidermal Growth Factor
Determined By Nmr Spectroscopy And Refined By Energy
Minimization With Restraints
Length = 53
Score = 30.4 bits (67), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 11 CDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCE 48
C + + +C +GG C I + Y C C GY+G+ C+
Sbjct: 6 CPSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQ 43
>pdb|1JL9|A Chain A, Crystal Structure Of Human Epidermal Growth Factor
pdb|1JL9|B Chain B, Crystal Structure Of Human Epidermal Growth Factor
Length = 51
Score = 30.4 bits (67), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 11 CDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEH 49
C +++ +C H G C I + Y C C GY GE C++
Sbjct: 6 CPLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQY 44
>pdb|3NJP|C Chain C, The Extracellular And Transmembrane Domain Interfaces In
Epidermal Growth Factor Receptor Signaling
pdb|3NJP|D Chain D, The Extracellular And Transmembrane Domain Interfaces In
Epidermal Growth Factor Receptor Signaling
Length = 47
Score = 30.0 bits (66), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 11 CDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHS 50
C +++ +C H G C I + Y C C GY GE C++
Sbjct: 2 CPLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQYR 41
>pdb|3H5C|B Chain B, X-Ray Structure Of Protein Z-Protein Z Inhibitor Complex
Length = 317
Score = 30.0 bits (66), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 19 CEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGTPC 54
C H G C++ + G Y C C GY G +CE + C
Sbjct: 13 CLHNGSCQDSIWG--YTCTCSPGYEGSNCELAKNEC 46
>pdb|1K36|A Chain A, Nmr Structure Of Human Epiregulin
pdb|1K37|A Chain A, Nmr Structure Of Human Epiregulin
Length = 46
Score = 29.6 bits (65), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 7 EMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEH 49
+T C +C HG +C +V C+C GY G CEH
Sbjct: 2 SITKCSSDMNGYCLHG-QCIYLVDMSQNYCRCEVGYTGVRCEH 43
>pdb|1MOX|C Chain C, Crystal Structure Of Human Epidermal Growth Factor
Receptor (Residues 1-501) In Complex With Tgf-Alpha
pdb|1MOX|D Chain D, Crystal Structure Of Human Epidermal Growth Factor
Receptor (Residues 1-501) In Complex With Tgf-Alpha
pdb|2TGF|A Chain A, The Solution Structure Of Human Transforming Growth
Factor Alpha
pdb|3TGF|A Chain A, The Solution Structure Of Human Transforming Growth
Factor Alpha
pdb|4TGF|A Chain A, Solution Structures Of Human Transforming Growth Factor
Alpha Derived From 1H Nmr Data
pdb|3E50|C Chain C, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Transforming Growth Factor-Alpha
pdb|3E50|D Chain D, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Transforming Growth Factor-Alpha
Length = 50
Score = 29.3 bits (64), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 11 CDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHS 50
C ++ +C HG C +VQ + C C +GY G CEH+
Sbjct: 8 CPDSHTQFCFHG-TCRFLVQEDKPACVCHSGYVGARCEHA 46
>pdb|1YUF|A Chain A, Type Alpha Transforming Growth Factor, Nmr, 16 Models
Without Energy Minimization
pdb|1YUG|A Chain A, Type Alpha Transforming Growth Factor, Nmr, 15 Models
After Ecepp3 ENERGY MINIMIZATION
Length = 50
Score = 28.9 bits (63), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 11 CDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHS 50
C ++ +C HG C +VQ + C C +GY G CEH+
Sbjct: 8 CPDSHTQFCFHG-TCRFLVQEDKPACVCHSGYVGARCEHA 46
>pdb|1X7A|L Chain L, Porcine Factor Ixa Complexed To 1-{3-[amino(Imino)
Methyl]phenyl}-N-[4-(1h-Benzimidazol-1-Yl)-2-
Fluorophenyl]-
3-(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide
Length = 146
Score = 28.9 bits (63), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 15/54 (27%)
Query: 12 DGTNEFW-------------CEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGT 52
+ TNEFW C +GG C++ + Y+C C G+ G++CE T
Sbjct: 36 EKTNEFWKQYVDGDQCEPNPCLNGGLCKDDINS--YECWCQVGFEGKNCELDAT 87
>pdb|4BDW|A Chain A, The Stucture Of The Fni-egf Tandem Domain Of Coagulation
Factor Xii In Complex With Holmium
pdb|4BDX|A Chain A, The Stucture Of The Fni-egf Tandem Domain Of Coagulation
Factor Xii
Length = 85
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 19 CEHGGKCEEIVQGEMYDCKCPAGYAGEHCE 48
C HGG+C E+ + C CP GY G C+
Sbjct: 53 CLHGGRCLEVEGHRL--CHCPVGYTGPFCD 80
>pdb|1NFU|B Chain B, Crystal Structure Of Human Coagulation Factor Xa
Complexed With Rpr132747
Length = 195
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 15/50 (30%)
Query: 12 DGTNEFW-------------CEHGGKCEEIVQGEMYDCKCPAGYAGEHCE 48
D TNEFW C++ GKC++ + GE Y C C G+ G++CE
Sbjct: 30 DKTNEFWNKYKDGDQCETSPCQNQGKCKDGL-GE-YTCTCLEGFEGKNCE 77
>pdb|2YGQ|A Chain A, Wif Domain-Epidermal Growth Factor (Egf)-Like Domains 1-3
Of Human Wnt Inhibitory Factor 1 In Complex With
1,2-Dipalmitoylphosphatidylcholine
Length = 324
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 29/74 (39%), Gaps = 16/74 (21%)
Query: 19 CEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGTPCGQIFCFHEAQCLALSQVHNACDCP 78
C +GG C E C+CP G+ G HCE + C L C CP
Sbjct: 155 CRNGGFCNE-----RRICECPDGFHGPHCEKA-------LCTPRCMNGGLCVTPGFCICP 202
Query: 79 PDWKG----SADCS 88
P + G A+CS
Sbjct: 203 PGFYGVNCDKANCS 216
>pdb|1EDM|B Chain B, Epidermal Growth Factor-Like Domain From Human Factor Ix
pdb|1EDM|C Chain C, Epidermal Growth Factor-Like Domain From Human Factor Ix
pdb|1IXA|A Chain A, The Three-Dimensional Structure Of The First Egf-Like
Module Of Human Factor Ix: Comparison With Egf And
Tgf-A
Length = 39
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 19 CEHGGKCEEIVQGEMYDCKCPAGYAGEHCE 48
C +GG C++ + Y+C CP G+ G++CE
Sbjct: 11 CLNGGSCKDDINS--YECWCPFGFEGKNCE 38
>pdb|1EZQ|B Chain B, Crystal Structure Of Human Coagulation Factor Xa
Complexed With Rpr128515
pdb|1F0R|B Chain B, Crystal Structure Of Human Coagulation Factor Xa
Complexed With Rpr208815
pdb|1F0S|B Chain B, Crystal Structure Of Human Coagulation Factor Xa
Complexed With Rpr208707
pdb|1KSN|B Chain B, Crystal Structure Of Human Coagulation Factor Xa
Complexed With Fxv673
pdb|1NFW|B Chain B, Crystal Structure Of Human Coagulation Factor Xa
Complexed With Rpr209685
pdb|1NFX|B Chain B, Crystal Structure Of Human Coagulation Factor Xa
Complexed With Rpr208944
pdb|1NFY|B Chain B, Crystal Structure Of Human Coagulation Factor Xa
Complexed With Rpr200095
pdb|1LPG|A Chain A, Crystal Structure Of Fxa In Complex With 79.
pdb|1LPK|A Chain A, Crystal Structure Of Fxa In Complex With 125.
pdb|1LPZ|A Chain A, Crystal Structure Of Fxa In Complex With 41.
pdb|1LQD|A Chain A, Crystal Structure Of Fxa In Complex With 45.
pdb|2BOH|A Chain A, Crystal Structure Of Factor Xa In Complex With Compound
"1"
pdb|2CJI|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J2U|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J34|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J38|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J4I|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J94|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J95|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2UWL|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWO|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWP|B Chain B, Factor Xa Inhibitor Complex
pdb|2VH0|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Biaryl Pyrrolidin-2-Ones Incorporating
Basic Heterocyclic Motifs
pdb|2VH6|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Biaryl P4 Motifs
pdb|2WYG|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2WYJ|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2Y7X|B Chain B, The Discovery Of Potent And Long-Acting Oral Factor Xa
Inhibitors With Tetrahydroisoquinoline And Benzazepine
P4 Motifs
pdb|2Y7Z|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y80|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y81|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y82|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
Length = 134
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 15/50 (30%)
Query: 12 DGTNEFW-------------CEHGGKCEEIVQGEMYDCKCPAGYAGEHCE 48
D TNEFW C++ GKC++ + GE Y C C G+ G++CE
Sbjct: 30 DKTNEFWNKYKDGDQCETSPCQNQGKCKDGL-GE-YTCTCLEGFEGKNCE 77
>pdb|3U7U|G Chain G, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
pdb|3U7U|H Chain H, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
pdb|3U7U|I Chain I, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
pdb|3U7U|J Chain J, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
pdb|3U7U|K Chain K, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
pdb|3U7U|L Chain L, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
Length = 55
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 8 MTMCDGTNEFWCEHGGKC---EEIVQGEMYDCKCPAGYAGEHCEH 49
+ C + +C +GG+C +++ Y CKCP + G+ C++
Sbjct: 5 LVKCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCPNEFTGDRCQN 49
>pdb|2YGP|A Chain A, Wif Domain-Egf-Like Domain 1 Met77trp Of Human Wnt
Inhibitory Factor 1 In Complex With
1,2-Dipalmitoylphosphatidylcholine
Length = 188
Score = 26.9 bits (58), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 5/30 (16%)
Query: 19 CEHGGKCEEIVQGEMYDCKCPAGYAGEHCE 48
C +GG C E C+CP G+ G HCE
Sbjct: 155 CRNGGFCNE-----RRICECPDGFHGPHCE 179
>pdb|2YGO|A Chain A, Wif Domain-Egf-Like Domain 1 Of Human Wnt Inhibitory
Factor 1 In Complex With
1,2-Dipalmitoylphosphatidylcholine
Length = 188
Score = 26.9 bits (58), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 5/30 (16%)
Query: 19 CEHGGKCEEIVQGEMYDCKCPAGYAGEHCE 48
C +GG C E C+CP G+ G HCE
Sbjct: 155 CRNGGFCNE-----RRICECPDGFHGPHCE 179
>pdb|3OJY|B Chain B, Crystal Structure Of Human Complement Component C8
Length = 537
Score = 26.9 bits (58), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
Query: 28 IVQGEMYDCKCPAGYAGEHCEHS---GTPC-GQIFCFHE-AQCLALSQVH-NACDCPPDW 81
+++G DC CP G G CE S TP G+ C+ + C + C+ PP
Sbjct: 461 VLKGSRCDCICPVGSQGLACEVSYRKNTPIDGKWNCWSNWSSCSGRRKTRQRQCNNPPPQ 520
Query: 82 KGSADCSLP 90
G + CS P
Sbjct: 521 NGGSPCSGP 529
>pdb|3N8Y|B Chain B, Structure Of Aspirin Acetylated Cyclooxygenase-1 In
Complex With Diclofenac
Length = 553
Score = 26.6 bits (57), Expect = 4.3, Method: Composition-based stats.
Identities = 10/40 (25%), Positives = 16/40 (40%)
Query: 53 PCGQIFCFHEAQCLALSQVHNACDCPPDWKGSADCSLPTL 92
PC C H+ C+ CDC +C++P +
Sbjct: 4 PCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTIPEI 43
>pdb|2OYE|P Chain P, Indomethacin-(r)-alpha-ethyl-ethanolamide Bound To
Cyclooxygenase-1
pdb|2OYU|P Chain P, Indomethacin-(S)-Alpha-Ethyl-Ethanolamide Bound To
Cyclooxygenase-1
Length = 600
Score = 26.6 bits (57), Expect = 4.3, Method: Composition-based stats.
Identities = 10/40 (25%), Positives = 16/40 (40%)
Query: 53 PCGQIFCFHEAQCLALSQVHNACDCPPDWKGSADCSLPTL 92
PC C H+ C+ CDC +C++P +
Sbjct: 35 PCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTIPEI 74
>pdb|1DIY|A Chain A, Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Active Site Of Pghs-1
pdb|1Q4G|A Chain A, 2.0 Angstrom Crystal Structure Of Ovine Prostaglandin H2
Synthase-1, In Complex With
Alpha-Methyl-4-Biphenylacetic Acid
pdb|1Q4G|B Chain B, 2.0 Angstrom Crystal Structure Of Ovine Prostaglandin H2
Synthase-1, In Complex With
Alpha-Methyl-4-Biphenylacetic Acid
pdb|2AYL|A Chain A, 2.0 Angstrom Crystal Structure Of Manganese
Protoporphyrin Ix- Reconstituted Ovine Prostaglandin H2
Synthase-1 Complexed With Flurbiprofen
pdb|2AYL|B Chain B, 2.0 Angstrom Crystal Structure Of Manganese
Protoporphyrin Ix- Reconstituted Ovine Prostaglandin H2
Synthase-1 Complexed With Flurbiprofen
pdb|3KK6|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Celecoxib
pdb|3KK6|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Celecoxib
pdb|3N8V|A Chain A, Crystal Structure Of Unoccupied Cyclooxygenase-1
pdb|3N8V|B Chain B, Crystal Structure Of Unoccupied Cyclooxygenase-1
pdb|3N8W|A Chain A, Crystal Structure Of R120qNATIVE CYCLOOXYGENASE-1
Heterodimer Mutant In Complex With Flurbiprofen
pdb|3N8X|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Nimesulide
pdb|3N8X|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Nimesulide
pdb|3N8Y|A Chain A, Structure Of Aspirin Acetylated Cyclooxygenase-1 In
Complex With Diclofenac
pdb|3N8Z|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Flurbiprofen
pdb|3N8Z|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Flurbiprofen
Length = 553
Score = 26.6 bits (57), Expect = 4.3, Method: Composition-based stats.
Identities = 10/40 (25%), Positives = 16/40 (40%)
Query: 53 PCGQIFCFHEAQCLALSQVHNACDCPPDWKGSADCSLPTL 92
PC C H+ C+ CDC +C++P +
Sbjct: 4 PCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTIPEI 43
>pdb|1PRH|A Chain A, The X-Ray Crystal Structure Of The Membrane Protein
Prostaglandin H2 Synthase-1
pdb|1PRH|B Chain B, The X-Ray Crystal Structure Of The Membrane Protein
Prostaglandin H2 Synthase-1
Length = 554
Score = 26.6 bits (57), Expect = 4.3, Method: Composition-based stats.
Identities = 10/40 (25%), Positives = 16/40 (40%)
Query: 53 PCGQIFCFHEAQCLALSQVHNACDCPPDWKGSADCSLPTL 92
PC C H+ C+ CDC +C++P +
Sbjct: 3 PCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTIPEI 42
>pdb|1HT5|A Chain A, The 2.75 Angstrom Resolution Model Of Ovine Cox-1
Complexed With Methyl Ester Flurbiprofen
pdb|1HT5|B Chain B, The 2.75 Angstrom Resolution Model Of Ovine Cox-1
Complexed With Methyl Ester Flurbiprofen
pdb|1HT8|A Chain A, The 2.7 Angstrom Resolution Model Of Ovine Cox-1
Complexed With Alclofenac
pdb|1HT8|B Chain B, The 2.7 Angstrom Resolution Model Of Ovine Cox-1
Complexed With Alclofenac
Length = 551
Score = 26.6 bits (57), Expect = 4.3, Method: Composition-based stats.
Identities = 10/40 (25%), Positives = 16/40 (40%)
Query: 53 PCGQIFCFHEAQCLALSQVHNACDCPPDWKGSADCSLPTL 92
PC C H+ C+ CDC +C++P +
Sbjct: 3 PCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTIPEI 42
>pdb|1EBV|A Chain A, Ovine Pghs-1 Complexed With Salicyl Hydroxamic Acid
Length = 551
Score = 26.6 bits (57), Expect = 4.3, Method: Composition-based stats.
Identities = 10/40 (25%), Positives = 16/40 (40%)
Query: 53 PCGQIFCFHEAQCLALSQVHNACDCPPDWKGSADCSLPTL 92
PC C H+ C+ CDC +C++P +
Sbjct: 3 PCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTIPEI 42
>pdb|1U67|A Chain A, Crystal Structure Of Arachidonic Acid Bound To A Mutant
Of Prostagladin H Synthase-1 That Forms Predominantly
11-hpete
Length = 600
Score = 26.6 bits (57), Expect = 4.4, Method: Composition-based stats.
Identities = 10/40 (25%), Positives = 16/40 (40%)
Query: 53 PCGQIFCFHEAQCLALSQVHNACDCPPDWKGSADCSLPTL 92
PC C H+ C+ CDC +C++P +
Sbjct: 35 PCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTIPEI 74
>pdb|3N8W|B Chain B, Crystal Structure Of R120qNATIVE CYCLOOXYGENASE-1
Heterodimer Mutant In Complex With Flurbiprofen
Length = 553
Score = 26.6 bits (57), Expect = 4.4, Method: Composition-based stats.
Identities = 10/40 (25%), Positives = 16/40 (40%)
Query: 53 PCGQIFCFHEAQCLALSQVHNACDCPPDWKGSADCSLPTL 92
PC C H+ C+ CDC +C++P +
Sbjct: 4 PCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTIPEI 43
>pdb|1PTH|A Chain A, The Structural Basis Of Aspirin Activity Inferred From
The Crystal Structure Of Inactivated Prostaglandin H2
Synthase
pdb|1PTH|B Chain B, The Structural Basis Of Aspirin Activity Inferred From
The Crystal Structure Of Inactivated Prostaglandin H2
Synthase
Length = 576
Score = 26.6 bits (57), Expect = 4.6, Method: Composition-based stats.
Identities = 10/40 (25%), Positives = 16/40 (40%)
Query: 53 PCGQIFCFHEAQCLALSQVHNACDCPPDWKGSADCSLPTL 92
PC C H+ C+ CDC +C++P +
Sbjct: 11 PCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTIPEI 50
>pdb|1PGE|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
P-(2'-Iodo-5'-Thenoyl) Hydrotropic Acid (Iodosuprofen)
pdb|1PGE|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
P-(2'-Iodo-5'-Thenoyl) Hydrotropic Acid (Iodosuprofen)
pdb|1PGF|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Cis Model
pdb|1PGF|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Cis Model
pdb|1PGG|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Trans Model
pdb|1PGG|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Trans Model
pdb|1FE2|A Chain A, Crystal Structure Of Dihomo-Gamma-Linoleic Acid Bound In
The Cyclooxygenase Channel Of Prostaglandin
Endoperoxide H Synthase-1.
pdb|1IGZ|A Chain A, Crystal Structure Of Linoleic Acid Bound In The
Cyclooxygenase Channel Of Prostaglandin Endoperoxide H
Synthase-1.
pdb|1IGX|A Chain A, Crystal Structure Of Eicosapentanoic Acid Bound In The
Cyclooxygenase Channel Of Prostaglandin Endoperoxide H
Synthase-1
Length = 576
Score = 26.6 bits (57), Expect = 4.6, Method: Composition-based stats.
Identities = 10/40 (25%), Positives = 16/40 (40%)
Query: 53 PCGQIFCFHEAQCLALSQVHNACDCPPDWKGSADCSLPTL 92
PC C H+ C+ CDC +C++P +
Sbjct: 11 PCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTIPEI 50
>pdb|1CQE|A Chain A, Prostaglandin H2 Synthase-1 Complex With Flurbiprofen
pdb|1CQE|B Chain B, Prostaglandin H2 Synthase-1 Complex With Flurbiprofen
pdb|1EQG|A Chain A, The 2.6 Angstrom Model Of Ovine Cox-1 Complexed With
Ibuprofen
pdb|1EQG|B Chain B, The 2.6 Angstrom Model Of Ovine Cox-1 Complexed With
Ibuprofen
pdb|1EQH|A Chain A, The 2.7 Angstrom Model Of Ovine Cox-1 Complexed With
Flurbiprofen
pdb|1EQH|B Chain B, The 2.7 Angstrom Model Of Ovine Cox-1 Complexed With
Flurbiprofen
Length = 580
Score = 26.6 bits (57), Expect = 4.6, Method: Composition-based stats.
Identities = 10/40 (25%), Positives = 16/40 (40%)
Query: 53 PCGQIFCFHEAQCLALSQVHNACDCPPDWKGSADCSLPTL 92
PC C H+ C+ CDC +C++P +
Sbjct: 15 PCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTIPEI 54
>pdb|1PFX|L Chain L, Porcine Factor Ixa
Length = 146
Score = 26.6 bits (57), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 15/52 (28%)
Query: 14 TNEFW-------------CEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGT 52
TN FW C +GG C+ + Y+C C G+ G++CE T
Sbjct: 38 TNXFWKQYVDGDQCEPNPCLNGGLCKXDINS--YECWCQVGFEGKNCELDAT 87
>pdb|1A3P|A Chain A, Role Of The 6-20 Disulfide Bridge In The Structure And
Activity Of Epidermal Growth Factor, Nmr, 20 Structures
Length = 45
Score = 26.6 bits (57), Expect = 4.9, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 18 WCEHGGKCEEIVQGEMYDCKCPAGYAGEHCE 48
+C +GG I + Y C C GY+G+ C+
Sbjct: 10 YCLNGGVXMHIESLDSYTCNCVIGYSGDRCQ 40
>pdb|3ZYJ|B Chain B, Netring1 In Complex With Ngl1
pdb|3ZYJ|D Chain D, Netring1 In Complex With Ngl1
Length = 426
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 5/30 (16%)
Query: 19 CEHGGKCEEIVQGEMYDCKCPAGYAGEHCE 48
C++GG C V+ C CPA Y G CE
Sbjct: 373 CQNGGTCHNNVR-----CLCPAAYTGILCE 397
>pdb|1P0S|L Chain L, Crystal Structure Of Blood Coagulation Factor Xa In
Complex With Ecotin M84r
Length = 138
Score = 26.2 bits (56), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 15/50 (30%)
Query: 12 DGTNEFW-------------CEHGGKCEEIVQGEMYDCKCPAGYAGEHCE 48
D TN FW C++ GKC++ + GE Y C C G+ G++CE
Sbjct: 35 DKTNXFWNKYKDGDQCETSPCQNQGKCKDGL-GE-YTCTCLEGFEGKNCE 82
>pdb|3LAQ|A Chain A, Structure-Based Engineering Of Species Selectivity In
The Upa-Upar Interaction
pdb|3LAQ|B Chain B, Structure-Based Engineering Of Species Selectivity In
The Upa-Upar Interaction
Length = 134
Score = 25.8 bits (55), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 19 CEHGGKCEEIVQ-GEMYDCKCPAGYAGEHCE 48
C++GG C + C CP + GEHCE
Sbjct: 14 CQNGGVCVSYKYFSRIRRCSCPRKFQGEHCE 44
>pdb|3VNG|A Chain A, Crystal Structure Of Keap1 In Complex With Synthetic Small
Molecular Based On A Co-crystallization
pdb|3VNH|A Chain A, Crystal Structure Of Keap1 Soaked With Synthetic Small
Molecular
Length = 309
Score = 25.8 bits (55), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 64 QCLALSQVHNACDCPPDWKGSADCSLPTLSQTAGAVVGGAIYA 106
Q L+ + +N D W AD +P S AG VVGG +YA
Sbjct: 37 QSLSYLEAYNPSDG--TWLRLADLQVPR-SGLAGCVVGGLLYA 76
>pdb|1U6D|X Chain X, Crystal Structure Of The Kelch Domain Of Human Keap1
pdb|2FLU|X Chain X, Crystal Structure Of The Kelch-Neh2 Complex
Length = 308
Score = 25.8 bits (55), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 64 QCLALSQVHNACDCPPDWKGSADCSLPTLSQTAGAVVGGAIYA 106
Q L+ + +N D W AD +P S AG VVGG +YA
Sbjct: 36 QSLSYLEAYNPSDG--TWLRLADLQVPR-SGLAGCVVGGLLYA 75
>pdb|1HAE|A Chain A, Heregulin-Alpha Epidermal Growth Factor-Like Domain,
Nmr, 20 Structures
pdb|1HAF|A Chain A, Heregulin-Alpha Epidermal Growth Factor-Like Domain,
Nmr, Minimized Average Structure
Length = 63
Score = 25.4 bits (54), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 8 MTMCDGTNEFWCEHGGKC---EEIVQGEMYDCKCPAGYAGEHC 47
+ C + +C +GG+C +++ Y CKC G+ G C
Sbjct: 3 LVKCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARC 45
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.452
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,572,029
Number of Sequences: 62578
Number of extensions: 180846
Number of successful extensions: 470
Number of sequences better than 100.0: 93
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 405
Number of HSP's gapped (non-prelim): 107
length of query: 138
length of database: 14,973,337
effective HSP length: 89
effective length of query: 49
effective length of database: 9,403,895
effective search space: 460790855
effective search space used: 460790855
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)