BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>044269
MLTSSTILDGTDQVNLNQVADLVNKQRSASINDFEIFHDSGSNTWNVVGAGLQRFVQMTN
WRYLDSERRFQHGLEACGVTKSLMKLGVKEGDTVIVGDMEMVWHDSANNPGPSKAKKGFE
DSIKWPQWK

High Scoring Gene Products

Symbol, full name Information P value
EMB269
EMBRYO DEFECTIVE 269
protein from Arabidopsis thaliana 3.5e-40
obg
GTPase obg
protein from Listeria monocytogenes serotype 4b str. F2365 1.8e-05

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  044269
        (129 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2182998 - symbol:EMB269 "EMBRYO DEFECTIVE 269"...   432  3.5e-40   1
UNIPROTKB|Q71ZD3 - symbol:obg "GTPase obg" species:265669...   109  1.8e-05   1


>TAIR|locus:2182998 [details] [associations]
            symbol:EMB269 "EMBRYO DEFECTIVE 269" species:3702
            "Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000287 "magnesium ion binding" evidence=IEA]
            [GO:0003924 "GTPase activity" evidence=IEA;IDA] [GO:0005525 "GTP
            binding" evidence=IEA] [GO:0009793 "embryo development ending in
            seed dormancy" evidence=IMP;NAS] [GO:0009416 "response to light
            stimulus" evidence=IEP] [GO:0009507 "chloroplast" evidence=IDA]
            [GO:0009790 "embryo development" evidence=IMP] [GO:0009570
            "chloroplast stroma" evidence=IDA] [GO:0009706 "chloroplast inner
            membrane" evidence=IDA] [GO:0010027 "thylakoid membrane
            organization" evidence=IMP] [GO:0006364 "rRNA processing"
            evidence=IMP] [GO:0009658 "chloroplast organization" evidence=IMP]
            [GO:0016556 "mRNA modification" evidence=RCA] HAMAP:MF_01454
            InterPro:IPR006073 InterPro:IPR006074 InterPro:IPR006169
            InterPro:IPR014100 InterPro:IPR015349 Pfam:PF01018 Pfam:PF01926
            Pfam:PF09269 PRINTS:PR00326 PROSITE:PS00905 GO:GO:0005525
            EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0000287
            GO:GO:0003924 GO:GO:0009658 GO:GO:0009793 GO:GO:0010027
            GO:GO:0009706 GO:GO:0009416 GO:GO:0006364 HSSP:P44681
            eggNOG:COG0536 Gene3D:2.70.210.12 PANTHER:PTHR11702:SF3
            SUPFAM:SSF82051 TIGRFAMs:TIGR02729 HOGENOM:HOG000019083
            SUPFAM:SSF102741 TIGRFAMs:TIGR03595 OMA:TKMDMPD EMBL:AY128395
            EMBL:BT008421 IPI:IPI00543471 RefSeq:NP_197358.2 UniGene:At.31411
            ProteinModelPortal:Q8L7L0 SMR:Q8L7L0 STRING:Q8L7L0 PaxDb:Q8L7L0
            PRIDE:Q8L7L0 EnsemblPlants:AT5G18570.1 GeneID:831975
            KEGG:ath:AT5G18570 TAIR:At5g18570 InParanoid:Q8L7L0
            PhylomeDB:Q8L7L0 ProtClustDB:CLSN2680078 ArrayExpress:Q8L7L0
            Genevestigator:Q8L7L0 Uniprot:Q8L7L0
        Length = 681

 Score = 432 (157.1 bits), Expect = 3.5e-40, P = 3.5e-40
 Identities = 75/116 (64%), Positives = 96/116 (82%)

Query:    15 NLNQVADLVNKQRSASINDFEIFHDSGSNTWNVVGAGLQRFVQMTNWRYLDSERRFQHGL 74
             NL+ VA  ++K+R A+IN+FE+F DSG+  W+VVGAGLQRFVQMTNWRY+DS++RFQH L
Sbjct:   566 NLDHVAKKIDKERRAAINEFEVFRDSGTRAWHVVGAGLQRFVQMTNWRYMDSDKRFQHVL 625

Query:    75 EACGVTKSLMKLGVKEGDTVIVGDMEMVWHDSANNPG-PSKAKKGFEDSIKWPQWK 129
             +ACGV KSL  +GVKEGDTVIVG+ME++WHDSAN    P+ + K   DS++WPQWK
Sbjct:   626 DACGVNKSLKNMGVKEGDTVIVGEMELIWHDSANGSSRPTDSNKTSTDSVRWPQWK 681


>UNIPROTKB|Q71ZD3 [details] [associations]
            symbol:obg "GTPase obg" species:265669 "Listeria
            monocytogenes serotype 4b str. F2365" [GO:0008150
            "biological_process" evidence=ND] HAMAP:MF_01454 InterPro:IPR005225
            InterPro:IPR006073 InterPro:IPR006074 InterPro:IPR006169
            InterPro:IPR014100 InterPro:IPR015349 Pfam:PF01018 Pfam:PF01926
            Pfam:PF09269 PIRSF:PIRSF002401 PRINTS:PR00326 PROSITE:PS00905
            GO:GO:0005525 TIGRFAMs:TIGR00231 GO:GO:0005737 GO:GO:0000287
            GO:GO:0003924 GO:GO:0006184 EMBL:AE017262 GenomeReviews:AE017262_GR
            eggNOG:COG0536 KO:K03979 Gene3D:2.70.210.12 PANTHER:PTHR11702:SF3
            SUPFAM:SSF82051 TIGRFAMs:TIGR02729 HSSP:P20964 HOGENOM:HOG000019083
            OMA:NRNRAPE ProtClustDB:PRK12297 SUPFAM:SSF102741
            TIGRFAMs:TIGR03595 RefSeq:YP_014154.1 ProteinModelPortal:Q71ZD3
            SMR:Q71ZD3 STRING:Q71ZD3 GeneID:2799273 KEGG:lmf:LMOf2365_1556
            PATRIC:20324351 Uniprot:Q71ZD3
        Length = 429

 Score = 109 (43.4 bits), Expect = 1.8e-05, P = 1.8e-05
 Identities = 36/110 (32%), Positives = 54/110 (49%)

Query:     1 MLTSSTILDGTDQVNLNQVA-----DLVNKQRSASINDFEIFHDSGSNTWNVVGAGLQRF 55
             +L  +  L+ T +  LN++      D V  +  A   DFEI  +    T+ + GA ++R 
Sbjct:   321 LLAIADKLETTPEFPLNEILEQEDEDTVLYKYVAEEPDFEISREP-DGTFVLSGAKIERL 379

Query:    56 VQMTNWRYLDSERRFQHGLEACGVTKSLMKLGVKEGDTVIVGDMEMVWHD 105
               MTN+    S  RF   L A GV ++L K G K+GD V + D E  + D
Sbjct:   380 FTMTNFERDASISRFARQLRAMGVDEALRKRGAKDGDIVRLLDYEFEFMD 429


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.131   0.404    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      129       129   0.00091  102 3  11 22  0.43    31
                                                     29  0.41    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  604 (64 KB)
  Total size of DFA:  149 KB (2089 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.33u 0.12s 12.45t   Elapsed:  00:00:01
  Total cpu time:  12.33u 0.12s 12.45t   Elapsed:  00:00:01
  Start:  Sat May 11 16:21:39 2013   End:  Sat May 11 16:21:40 2013

Back to top