Query 044269
Match_columns 129
No_of_seqs 111 out of 579
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 22:52:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044269.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044269hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1udx_A The GTP-binding protein 99.8 3.4E-20 1.2E-24 157.2 10.6 91 15-106 315-415 (416)
2 3dpu_A RAB family protein; roc 92.2 0.095 3.2E-06 44.4 3.5 42 43-84 234-275 (535)
3 3lae_A UPF0053 protein HI0107; 84.9 1.6 5.5E-05 28.2 4.8 59 36-104 3-66 (81)
4 2p13_A CBS domain; alpha-beta 84.9 2.7 9.3E-05 27.6 5.9 59 35-103 8-73 (90)
5 2pli_A Uncharacterized protein 83.3 3.1 0.00011 27.4 5.7 60 36-105 12-76 (91)
6 2nqw_A CBS domain protein; PFA 79.6 6.2 0.00021 25.9 6.2 61 35-105 8-78 (93)
7 3idw_A Actin cytoskeleton-regu 77.5 0.11 3.6E-06 34.9 -3.1 16 81-96 42-57 (72)
8 2pls_A CBS domain protein; APC 76.8 8.4 0.00029 24.9 6.1 60 36-105 3-71 (86)
9 2oai_A Hemolysin; PFAM03471, x 76.6 8.5 0.00029 25.4 6.2 59 36-104 12-78 (94)
10 3llb_A Uncharacterized protein 76.5 6.9 0.00024 25.2 5.6 59 36-104 3-66 (83)
11 2r2z_A Hemolysin; APC85144, en 76.3 4.6 0.00016 26.5 4.7 59 36-104 10-75 (93)
12 1hmj_A RPB5, protein (subunit 74.1 2.9 9.8E-05 28.1 3.2 15 83-97 44-58 (78)
13 3ded_A Probable hemolysin; str 73.9 11 0.00038 26.0 6.4 60 35-104 28-97 (113)
14 2p4p_A Hypothetical protein HD 71.5 9.2 0.00031 24.7 5.2 56 41-105 7-69 (86)
15 2nyg_A YOKD protein; PFAM02522 69.2 2.7 9.3E-05 33.7 2.6 19 79-97 18-36 (273)
16 3gqs_A Adenylate cyclase-like 68.9 3.8 0.00013 27.4 2.9 21 86-106 82-102 (106)
17 2cqa_A RUVB-like 2; TIP48, TIP 67.9 3.9 0.00013 28.4 2.9 19 79-97 54-72 (95)
18 3ijw_A Aminoglycoside N3-acety 67.9 3 0.0001 33.5 2.6 19 79-97 20-38 (268)
19 2kfu_A RV1827 PThr 22; FHA dom 67.5 7.8 0.00027 28.5 4.7 28 85-112 128-155 (162)
20 3sma_A FRBF; N-acetyl transfer 65.7 3.5 0.00012 33.6 2.6 19 79-97 27-45 (286)
21 3va4_A Mediator of DNA damage 65.4 5.6 0.00019 28.2 3.4 20 86-105 106-125 (132)
22 2xt9_B Putative signal transdu 62.2 5.5 0.00019 27.0 2.8 20 86-105 85-104 (115)
23 2rk5_A Putative hemolysin; str 61.6 18 0.00061 23.3 5.1 58 36-103 2-70 (87)
24 3po8_A RV0020C protein, putati 60.9 7.7 0.00026 25.5 3.2 20 85-104 76-95 (100)
25 2ff4_A Probable regulatory pro 59.1 7.8 0.00027 31.4 3.6 26 85-110 360-385 (388)
26 1ioo_A SF11-RNAse; SELF-incomp 58.9 7.5 0.00026 28.8 3.2 32 65-96 100-134 (196)
27 2ki8_A Tungsten formylmethanof 58.2 5.8 0.0002 28.4 2.4 17 81-97 60-76 (146)
28 2l66_A SSO7C4, transcriptional 58.2 8.2 0.00028 23.1 2.7 15 82-96 20-34 (53)
29 1bol_A Protein (ribonuclease R 58.2 4.1 0.00014 31.2 1.7 33 64-96 128-163 (222)
30 3p6d_A Fatty acid-binding prot 57.9 2.4 8.3E-05 30.6 0.3 27 70-96 24-59 (139)
31 1r21_A Antigen KI-67; beta san 55.4 6.1 0.00021 27.2 2.1 22 85-106 87-108 (128)
32 2p3h_A Uncharacterized CBS dom 54.7 11 0.00039 25.6 3.3 56 36-102 6-66 (101)
33 2kb3_A Oxoglutarate dehydrogen 54.1 9 0.00031 27.4 2.9 21 85-105 119-139 (143)
34 1eik_A RNA polymerase subunit 53.2 7.3 0.00025 26.0 2.0 15 83-97 46-60 (77)
35 1yfb_A Transition state regula 53.1 11 0.00036 23.6 2.7 15 82-96 30-44 (59)
36 2g7b_A Cellular retinoic acid- 52.3 4.3 0.00015 28.9 0.9 28 70-97 15-53 (137)
37 3d3z_A Actibind; RNAse, hydrol 49.5 16 0.00054 28.5 3.8 29 64-92 134-165 (247)
38 1wln_A Afadin; beta sandwich, 48.4 16 0.00056 24.8 3.4 19 87-105 94-113 (120)
39 1ggl_A Protein (cellular retin 47.4 4.4 0.00015 28.9 0.2 20 70-89 16-35 (134)
40 3elx_A Ileal bIle acid-binding 46.7 17 0.00058 26.1 3.3 20 70-89 18-37 (138)
41 3utn_X Thiosulfate sulfurtrans 45.8 14 0.00047 29.9 3.0 19 80-98 102-120 (327)
42 2jqj_A DNA damage response pro 45.8 25 0.00085 24.9 4.1 20 86-105 101-123 (151)
43 1jy5_A CALSEPRRP; RNAse, alpha 45.7 6.2 0.00021 29.7 0.9 31 65-95 115-150 (212)
44 3vg7_A Fatty acid-binding prot 45.7 14 0.00046 26.3 2.6 20 70-89 18-37 (132)
45 1uht_A Expressed protein; FHA 45.3 12 0.00041 25.3 2.2 19 86-104 91-109 (118)
46 2qo4_A Liver-basic fatty acid 45.3 19 0.00065 25.2 3.3 27 70-96 15-41 (126)
47 1iyb_A Ribonuclease, ribonucle 43.3 9.4 0.00032 28.6 1.5 32 65-96 110-145 (208)
48 1mzk_A Kinase associated prote 43.1 8.7 0.0003 27.0 1.3 19 86-104 99-117 (139)
49 3oun_A Putative uncharacterize 42.3 19 0.00064 26.5 3.0 18 86-103 139-156 (157)
50 1wv3_A Similar to DNA segregat 42.2 12 0.0004 28.9 2.0 20 87-106 149-169 (238)
51 2i6v_A General secretion pathw 41.9 13 0.00046 23.4 1.9 19 83-101 32-51 (87)
52 1iqq_A S3-RNAse; japanese PEAR 41.6 30 0.001 25.5 4.1 31 64-94 97-133 (200)
53 2h3j_A Hypothetical protein PA 41.5 20 0.0007 22.0 2.7 18 79-96 23-40 (75)
54 2pie_A E3 ubiquitin-protein li 40.7 14 0.00049 25.8 2.1 19 86-104 90-115 (138)
55 4ayb_H DNA-directed RNA polyme 39.5 14 0.00048 24.8 1.8 12 86-97 55-66 (84)
56 1a62_A RHO; transcription term 38.9 33 0.0011 24.3 3.8 31 86-116 89-128 (130)
57 3r8n_Q 30S ribosomal protein S 38.8 12 0.00041 24.9 1.3 14 86-99 48-61 (80)
58 2f73_A L-FABP, fatty acid-bind 37.5 21 0.00072 26.0 2.6 27 70-96 37-63 (149)
59 3tiw_A Transitional endoplasmi 37.3 19 0.00066 27.1 2.5 18 81-98 44-61 (187)
60 3u5c_L RP41, S18, YS12, 40S ri 37.2 43 0.0015 25.0 4.3 32 87-120 116-154 (156)
61 2xzm_Q Ribosomal protein S17 c 37.1 35 0.0012 25.5 3.8 34 87-120 115-155 (157)
62 3hx1_A SLR1951 protein; P74513 37.1 13 0.00046 25.9 1.5 20 86-105 94-113 (131)
63 2lba_A BABP protein; ileal bIl 37.0 23 0.00078 25.2 2.7 27 70-96 19-45 (136)
64 2rcq_A CRBP-II, retinol-bindin 37.0 22 0.00075 25.5 2.6 27 70-96 20-46 (141)
65 1p6p_A Fatty acid-binding prot 36.0 19 0.00064 25.2 2.1 27 70-96 14-40 (125)
66 2k5l_A FEOA; structure, NESG, 35.8 26 0.00089 22.3 2.6 16 81-96 26-41 (81)
67 1vyf_A SM14, 14 kDa fatty acid 35.6 24 0.00083 24.9 2.6 27 70-96 18-44 (135)
68 3e19_A FEOA; transcriptional r 35.6 26 0.00089 21.8 2.6 17 81-97 29-45 (77)
69 2qne_A Putative methyltransfer 35.5 15 0.00051 31.9 1.8 40 58-97 23-74 (495)
70 1mvg_A Liver basic fatty acid 35.5 18 0.00063 25.3 2.0 26 70-95 14-39 (125)
71 1ifc_A Intestinal fatty acid b 35.3 19 0.00066 25.4 2.1 27 70-96 15-41 (132)
72 1ftp_A Muscle fatty acid bindi 35.0 25 0.00086 24.8 2.6 20 70-89 17-36 (133)
73 1mvf_D MAZE protein, PEMI-like 34.5 25 0.00086 22.4 2.4 15 82-96 21-35 (82)
74 3mhx_A Putative ferrous iron t 34.3 33 0.0011 21.9 2.9 17 80-96 28-44 (85)
75 4a60_A Fatty acid-binding prot 34.2 20 0.00067 26.4 2.0 27 70-96 39-74 (154)
76 2hj0_A Putative citrate lyase, 34.1 23 0.00079 30.6 2.7 22 78-99 51-72 (519)
77 3qwz_A Transitional endoplasmi 33.9 21 0.00072 27.4 2.2 18 81-98 47-64 (211)
78 3els_A PRE-mRNA leakage protei 33.8 19 0.00066 26.1 1.9 18 87-104 133-156 (158)
79 2k4y_A FEOA-like protein; GFT 33.8 30 0.001 22.2 2.7 18 79-96 27-44 (86)
80 1cz4_A VCP-like ATPase; double 33.7 24 0.00084 26.3 2.5 18 81-98 29-46 (185)
81 1gxc_A CHK2, CDS1, serine/thre 33.2 31 0.0011 24.4 2.9 21 86-106 118-141 (149)
82 3mab_A Uncharacterized protein 33.0 33 0.0011 23.2 2.9 38 49-90 13-50 (93)
83 2kc2_A Talin-1, F1; FERM, adhe 32.6 22 0.00075 25.6 2.0 17 80-96 103-119 (128)
84 1qd7_I S17 ribosomal protein; 32.2 18 0.0006 24.6 1.4 12 87-98 49-60 (89)
85 3id1_A Regulator of sigma E pr 31.9 24 0.00082 22.8 1.9 19 84-102 16-35 (95)
86 2i4s_A General secretion pathw 31.9 20 0.0007 23.4 1.6 18 84-101 51-69 (105)
87 3jzd_A Iron-containing alcohol 31.7 13 0.00044 30.2 0.7 44 50-93 278-321 (358)
88 2f9h_A PTS system, IIA compone 31.6 33 0.0011 24.7 2.8 19 85-103 52-70 (129)
89 2eaq_A LIM domain only protein 31.6 25 0.00085 21.9 1.9 18 84-101 42-60 (90)
90 2a0a_A DER F 13; beta barrel, 31.5 25 0.00084 24.8 2.1 27 70-96 16-42 (131)
91 3kbb_A Phosphorylated carbohyd 30.7 22 0.00075 24.7 1.7 21 80-100 147-167 (216)
92 1lgp_A Cell cycle checkpoint p 30.6 28 0.00097 23.2 2.2 20 86-105 83-110 (116)
93 2pkt_A PDZ and LIM domain prot 30.6 24 0.00083 22.0 1.8 18 84-101 41-59 (91)
94 1lpj_A Retinol-binding protein 30.5 26 0.00088 24.7 2.1 27 70-96 16-42 (133)
95 2pa1_A PDZ and LIM domain prot 29.8 26 0.00088 21.7 1.8 18 84-101 40-58 (87)
96 3hcw_A Maltose operon transcri 29.8 25 0.00084 26.1 1.9 22 76-97 204-226 (295)
97 2uzc_A Human pdlim5, PDZ and L 29.4 26 0.0009 21.6 1.8 18 84-101 41-59 (88)
98 3lkv_A Uncharacterized conserv 29.2 20 0.00068 27.4 1.4 25 77-106 27-51 (302)
99 3qnm_A Haloacid dehalogenase-l 29.2 22 0.00075 24.5 1.5 21 79-99 168-188 (240)
100 2q3g_A PDZ and LIM domain prot 28.7 30 0.001 21.5 1.9 18 84-101 41-59 (89)
101 3ddh_A Putative haloacid dehal 28.5 20 0.00069 24.5 1.2 21 79-99 163-183 (234)
102 2vqe_Q 30S ribosomal protein S 28.3 22 0.00076 24.9 1.3 13 87-99 50-62 (105)
103 1fdq_A Fatty acid-binding prot 28.2 21 0.00072 25.1 1.2 20 70-89 16-35 (131)
104 1gud_A ALBP, D-allose-binding 28.2 20 0.00069 26.4 1.2 21 76-97 205-225 (288)
105 2vsp_A PDZ domain-containing p 28.0 31 0.0011 21.6 1.9 19 83-101 40-59 (91)
106 1zjc_A Aminopeptidase AMPS; me 28.0 44 0.0015 28.0 3.4 31 58-97 4-34 (418)
107 2xxz_A Lysine-specific demethy 27.8 83 0.0028 25.9 4.9 46 51-104 247-299 (332)
108 3bqs_A Uncharacterized protein 27.6 66 0.0023 21.6 3.6 36 49-88 13-48 (93)
109 2f5y_A Regulator of G-protein 27.5 25 0.00087 22.1 1.5 18 84-101 38-56 (91)
110 2kv8_A RGS12, regulator of G-p 27.5 26 0.00088 21.5 1.5 18 84-101 37-55 (83)
111 2vsv_A Rhophilin-2; scaffold p 27.3 31 0.0011 23.2 1.9 20 83-102 57-77 (109)
112 2zpm_A Regulator of sigma E pr 27.3 30 0.001 21.5 1.8 19 83-101 17-36 (91)
113 1m5z_A GRIP, AMPA receptor int 27.2 26 0.00089 21.8 1.5 18 84-101 46-64 (91)
114 3ksm_A ABC-type sugar transpor 27.2 22 0.00074 25.6 1.2 20 77-97 200-219 (276)
115 2jxo_A Ezrin-radixin-moesin-bi 27.0 26 0.0009 22.2 1.5 18 84-101 47-65 (98)
116 2w4f_A Protein LAP4; structura 27.0 29 0.00098 21.8 1.6 19 83-101 47-66 (97)
117 1vcz_A RNAse NGR3; hydrolase, 26.9 21 0.00073 26.8 1.1 32 65-96 108-144 (217)
118 2bwf_A Ubiquitin-like protein 26.8 25 0.00084 21.1 1.3 16 81-96 57-72 (77)
119 2eeg_A PDZ and LIM domain prot 26.8 31 0.0011 21.8 1.8 18 84-101 46-64 (94)
120 3ppt_A Sodium-calcium exchange 26.7 18 0.00061 25.6 0.6 20 70-89 16-35 (133)
121 1mdc_A Insect fatty acid bindi 26.7 21 0.00072 25.2 1.0 27 70-96 16-42 (132)
122 4h87_A Kanadaptin; FHA domain 26.6 34 0.0012 23.9 2.1 16 88-103 111-126 (130)
123 1k6d_A Acetate COA-transferase 26.4 30 0.001 26.1 1.9 19 79-99 8-26 (220)
124 3exc_X Uncharacterized protein 26.4 1.3E+02 0.0045 19.8 5.0 42 58-99 9-70 (91)
125 3l8h_A Putative haloacid dehal 26.4 37 0.0013 23.0 2.3 20 80-99 108-127 (179)
126 2gcx_A FEOA, ferrous iron tran 26.4 29 0.00098 21.5 1.5 16 81-96 24-39 (75)
127 3s6j_A Hydrolase, haloacid deh 26.2 27 0.00091 24.1 1.5 22 79-100 153-174 (233)
128 3pjy_A Hypothetical signal pep 26.1 36 0.0012 24.3 2.2 17 83-99 113-129 (136)
129 4a1y_A Myelin P2 protein; tran 26.1 19 0.00064 25.6 0.6 27 70-96 18-53 (133)
130 1ndd_A NEDD8, protein (ubiquit 26.1 27 0.00094 20.7 1.4 16 81-96 54-69 (76)
131 1rgw_A ZAsp protein; PDZ, cyph 26.1 28 0.00096 21.3 1.4 17 85-101 40-57 (85)
132 3cdk_A Succinyl-COA:3-ketoacid 25.9 37 0.0013 26.1 2.4 20 78-99 10-29 (241)
133 3fzq_A Putative hydrolase; YP_ 25.8 34 0.0012 24.7 2.0 22 78-99 204-225 (274)
134 2ego_A General receptor for ph 25.7 33 0.0011 21.7 1.8 19 83-101 50-69 (96)
135 3rsw_A Fatty acid-binding prot 25.5 25 0.00084 26.0 1.2 20 70-89 42-61 (158)
136 1poi_A Glutaconate coenzyme A- 25.5 42 0.0014 26.9 2.7 21 78-99 5-25 (317)
137 2k5f_A Ferrous iron transport 25.3 47 0.0016 22.5 2.6 16 81-96 25-40 (105)
138 1crb_A Cellular retinol bindin 25.2 23 0.0008 25.0 1.0 20 70-89 16-35 (134)
139 1vb7_A PDZ and LIM domain 2; P 25.1 32 0.0011 21.7 1.6 18 84-101 44-62 (94)
140 3q6l_A Fatty acid-binding prot 25.1 20 0.00068 26.2 0.6 20 70-89 37-56 (152)
141 2v90_A PDZ domain-containing p 25.0 27 0.00094 22.0 1.3 18 84-101 44-62 (96)
142 3a9j_A Ubiquitin; protein comp 25.0 28 0.00096 20.6 1.3 16 81-96 54-69 (76)
143 3h0g_E DNA-directed RNA polyme 24.9 37 0.0013 26.4 2.2 14 84-97 181-194 (210)
144 3j20_R 30S ribosomal protein S 24.9 27 0.00093 24.8 1.3 12 87-98 79-90 (113)
145 3ngh_A PDZ domain-containing p 24.8 38 0.0013 21.7 1.9 18 84-101 40-58 (106)
146 2he4_A Na(+)/H(+) exchange reg 24.8 31 0.001 21.5 1.5 18 84-101 42-60 (90)
147 1dzf_A DNA-directed RNA polyme 24.7 38 0.0013 26.5 2.2 14 83-96 185-198 (215)
148 3kzd_A TIAM-1, T-lymphoma inva 24.7 35 0.0012 22.8 1.8 19 83-101 48-67 (94)
149 1wv8_A TT1413, hypothetical pr 24.6 78 0.0027 20.7 3.5 55 35-95 7-61 (73)
150 3hs3_A Ribose operon repressor 24.6 31 0.0011 25.3 1.6 23 75-97 189-212 (277)
151 1g9o_A NHE-RF; PDZ domain, com 24.5 36 0.0012 21.1 1.8 18 84-101 41-59 (91)
152 2pr7_A Haloacid dehalogenase/e 24.5 41 0.0014 21.3 2.1 21 80-100 81-101 (137)
153 3qik_A Phosphatidylinositol 3, 24.4 28 0.00096 23.9 1.3 18 84-101 53-71 (101)
154 2kzr_A Ubiquitin thioesterase 24.4 19 0.00066 22.9 0.4 18 81-98 59-76 (86)
155 4gib_A Beta-phosphoglucomutase 24.4 33 0.0011 24.9 1.7 20 80-99 177-196 (250)
156 3nas_A Beta-PGM, beta-phosphog 24.3 26 0.00087 24.4 1.1 48 50-99 118-172 (233)
157 1y8x_B Ubiquitin-activating en 24.3 17 0.0006 24.9 0.2 20 79-98 64-83 (98)
158 3vay_A HAD-superfamily hydrola 24.2 27 0.00091 24.2 1.2 21 79-99 161-181 (230)
159 3umg_A Haloacid dehalogenase; 24.1 31 0.001 24.0 1.5 22 78-99 174-195 (254)
160 3d02_A Putative LACI-type tran 24.1 29 0.00098 25.5 1.4 20 77-97 202-221 (303)
161 3g1w_A Sugar ABC transporter; 23.9 27 0.00093 25.7 1.2 21 76-97 199-219 (305)
162 4ask_A Lysine-specific demethy 23.9 83 0.0028 27.6 4.4 26 80-105 302-334 (510)
163 2dls_A PDZ-rhogef, RHO guanine 23.8 32 0.0011 21.7 1.4 18 84-101 43-61 (93)
164 3etc_A AMP-binding protein; ad 23.8 50 0.0017 27.6 2.9 17 81-97 101-117 (580)
165 1eal_A Gastrotropin, ileal lip 23.7 21 0.00071 25.0 0.5 21 70-90 14-34 (127)
166 3kke_A LACI family transcripti 23.7 31 0.0011 25.6 1.5 22 76-97 209-231 (303)
167 2edz_A PDZ domain-containing p 23.6 35 0.0012 22.4 1.6 18 84-101 52-70 (114)
168 1y7n_A Amyloid beta A4 precurs 23.6 32 0.0011 22.0 1.4 18 84-101 45-63 (90)
169 3brs_A Periplasmic binding pro 23.5 28 0.00096 25.3 1.2 21 76-97 202-222 (289)
170 1ztp_A Basophilic leukemia exp 23.4 52 0.0018 26.3 2.8 22 58-79 176-197 (251)
171 3v6c_B Ubiquitin; structural g 23.3 31 0.0011 21.9 1.3 17 80-96 70-86 (91)
172 2fep_A Catabolite control prot 23.3 32 0.0011 25.3 1.5 21 76-96 207-228 (289)
173 2csw_A Ubiquitin ligase protei 23.2 15 0.00051 26.0 -0.4 13 86-98 98-110 (145)
174 1zq1_A Glutamyl-tRNA(Gln) amid 23.2 54 0.0019 27.9 3.1 20 78-97 2-21 (438)
175 2lx9_A Ferrous iron transport 23.2 64 0.0022 20.7 2.8 16 81-96 24-39 (83)
176 3phx_B Ubiquitin-like protein 23.1 33 0.0011 20.9 1.4 16 81-96 58-73 (79)
177 1ti6_A Pyrogallol hydroxytrans 23.1 38 0.0013 30.3 2.2 16 81-96 777-792 (875)
178 3sfj_A TAX1-binding protein 3; 23.1 37 0.0013 21.6 1.6 19 83-101 58-77 (104)
179 1xr4_A Putative citrate lyase 23.0 55 0.0019 28.1 3.1 21 78-98 48-68 (509)
180 1fr3_A MOP, molybdate/tungstat 23.0 57 0.0019 19.0 2.4 13 84-96 44-56 (67)
181 1whd_A RGS3, regulator of G-pr 23.0 33 0.0011 22.0 1.4 19 83-101 49-68 (100)
182 3huu_A Transcription regulator 22.9 33 0.0011 25.4 1.5 23 75-97 213-236 (305)
183 3k4h_A Putative transcriptiona 22.8 34 0.0011 24.9 1.5 21 77-97 205-226 (292)
184 1q3o_A Shank1; PDZ, GKAP, pept 22.7 40 0.0014 21.8 1.8 18 84-101 59-77 (109)
185 3gqw_A Fatty acid AMP ligase; 22.7 55 0.0019 26.6 3.0 16 82-97 65-80 (576)
186 3dnp_A Stress response protein 22.7 31 0.0011 25.4 1.3 25 75-99 203-227 (290)
187 3e58_A Putative beta-phosphogl 22.6 30 0.001 23.2 1.1 21 79-99 151-171 (214)
188 1wf7_A Enigma homologue protei 22.6 35 0.0012 21.9 1.4 18 84-101 43-61 (103)
189 2eeh_A PDZ domain-containing p 22.5 38 0.0013 21.6 1.6 19 83-101 49-68 (100)
190 1x5q_A LAP4 protein; PDZ domai 22.5 38 0.0013 21.9 1.6 19 83-101 59-78 (110)
191 3dv9_A Beta-phosphoglucomutase 22.5 30 0.001 24.1 1.1 22 79-100 171-192 (247)
192 3o83_A Peptide arylation enzym 22.5 55 0.0019 26.9 2.9 17 81-97 70-86 (544)
193 3umc_A Haloacid dehalogenase; 22.5 30 0.001 24.3 1.2 21 79-99 179-199 (254)
194 2ah5_A COG0546: predicted phos 22.4 44 0.0015 23.3 2.1 21 79-99 143-163 (210)
195 3k9c_A Transcriptional regulat 22.3 40 0.0014 24.8 1.9 21 76-96 197-217 (289)
196 3r68_A Na(+)/H(+) exchange reg 22.2 31 0.0011 21.5 1.1 18 84-101 43-61 (95)
197 3tb6_A Arabinose metabolism tr 22.2 37 0.0013 24.6 1.6 22 76-97 213-235 (298)
198 2nap_A Protein (periplasmic ni 22.2 45 0.0015 28.9 2.4 17 81-97 648-664 (723)
199 1tmo_A TMAO reductase, trimeth 22.1 49 0.0017 29.2 2.7 17 81-97 714-730 (829)
200 3kzx_A HAD-superfamily hydrola 22.1 59 0.002 22.5 2.7 20 80-99 166-186 (231)
201 3e61_A Putative transcriptiona 22.0 38 0.0013 24.5 1.6 23 75-97 188-211 (277)
202 2bps_A YUKD protein; ubiquitin 21.9 34 0.0012 22.6 1.3 14 83-96 67-80 (81)
203 1v25_A Long-chain-fatty-acid-C 21.9 58 0.002 26.7 2.9 17 81-97 62-78 (541)
204 2v7b_A Benzoate-coenzyme A lig 21.9 58 0.002 26.4 2.9 17 81-97 63-79 (529)
205 2pjh_A Protein NPL4, nuclear p 21.9 19 0.00066 23.2 0.0 16 82-97 63-78 (80)
206 2d9r_A Conserved hypothetical 21.8 54 0.0018 22.5 2.3 20 77-96 79-99 (104)
207 3khf_A Microtubule-associated 21.8 41 0.0014 21.3 1.6 17 85-101 49-66 (99)
208 1t5h_X 4-chlorobenzoyl COA lig 21.8 59 0.002 26.3 2.9 17 81-97 44-60 (504)
209 2d90_A PDZ domain containing p 21.8 37 0.0013 21.6 1.5 17 84-100 44-61 (102)
210 3bbl_A Regulatory protein of L 21.8 37 0.0013 24.9 1.6 21 76-96 200-221 (287)
211 3c3k_A Alanine racemase; struc 21.8 38 0.0013 24.8 1.6 22 76-97 196-218 (285)
212 3m9w_A D-xylose-binding peripl 21.7 23 0.0008 26.3 0.5 20 77-97 201-220 (313)
213 3ed5_A YFNB; APC60080, bacillu 21.7 32 0.0011 23.7 1.2 22 79-100 164-186 (238)
214 2ivy_A Hypothetical protein SS 21.7 1.1E+02 0.0037 20.5 3.8 42 58-99 8-75 (101)
215 3g7s_A Long-chain-fatty-acid-- 21.7 59 0.002 26.7 2.9 17 81-97 67-83 (549)
216 2pib_A Phosphorylated carbohyd 21.7 32 0.0011 23.1 1.1 21 79-99 146-166 (216)
217 1sgl_A Trichomaglin; S-like ri 21.7 53 0.0018 24.4 2.5 32 65-96 115-151 (209)
218 3ni2_A 4-coumarate:COA ligase; 21.7 59 0.002 26.6 2.9 16 82-97 65-80 (536)
219 1v2y_A 3300001G02RIK protein; 21.7 37 0.0013 23.2 1.5 16 81-96 77-92 (105)
220 3h5t_A Transcriptional regulat 21.5 36 0.0012 26.1 1.5 22 76-97 280-302 (366)
221 1pg4_A Acetyl-COA synthetase; 21.5 51 0.0018 28.0 2.6 19 79-97 120-138 (652)
222 3dao_A Putative phosphatse; st 21.5 33 0.0011 25.5 1.3 22 78-99 215-236 (283)
223 1b56_A Fatty acid binding prot 21.5 26 0.00089 24.7 0.6 20 70-89 19-38 (135)
224 2c4n_A Protein NAGD; nucleotid 21.4 33 0.0011 23.7 1.2 22 78-99 181-202 (250)
225 3gyb_A Transcriptional regulat 21.4 33 0.0011 24.9 1.2 22 76-97 188-210 (280)
226 2fdr_A Conserved hypothetical 21.4 33 0.0011 23.6 1.2 57 44-100 103-170 (229)
227 4fuq_A Malonyl COA synthetase; 21.4 60 0.0021 26.3 2.9 17 81-97 43-59 (503)
228 1o8v_A Fatty acid binding prot 21.3 26 0.0009 24.7 0.6 18 70-87 17-34 (134)
229 2iv2_X Formate dehydrogenase H 21.3 47 0.0016 28.8 2.4 17 81-97 613-629 (715)
230 1zd0_A Hypothetical protein PF 21.3 35 0.0012 25.1 1.3 23 72-94 81-103 (150)
231 1h0h_A Formate dehydrogenase ( 21.3 39 0.0013 30.9 1.9 15 83-97 889-903 (977)
232 3bfj_A 1,3-propanediol oxidore 21.2 31 0.001 27.8 1.1 42 52-93 304-354 (387)
233 3rrl_A Succinyl-COA:3-ketoacid 21.2 45 0.0015 25.8 2.0 21 77-99 9-29 (235)
234 3qxg_A Inorganic pyrophosphata 21.1 48 0.0016 23.3 2.0 22 79-100 172-193 (243)
235 3d8u_A PURR transcriptional re 21.1 38 0.0013 24.4 1.5 22 76-97 193-215 (275)
236 3bbn_Q Ribosomal protein S17; 21.0 29 0.00099 25.6 0.8 12 87-98 107-118 (142)
237 2pzd_A Serine protease HTRA2; 21.0 43 0.0015 21.8 1.6 20 82-101 47-67 (113)
238 1ujv_A Membrane associated gua 20.9 37 0.0013 21.8 1.3 17 85-101 45-62 (96)
239 2uyz_B Small ubiquitin-related 20.9 43 0.0015 20.4 1.5 16 81-96 57-72 (79)
240 3cs3_A Sugar-binding transcrip 20.9 34 0.0012 24.9 1.2 22 76-97 189-211 (277)
241 2qu7_A Putative transcriptiona 20.9 40 0.0014 24.6 1.6 22 76-97 199-221 (288)
242 2zkq_q 40S ribosomal protein S 20.9 41 0.0014 25.2 1.6 12 87-98 119-130 (158)
243 3mc1_A Predicted phosphatase, 20.9 34 0.0012 23.5 1.2 22 79-100 148-169 (226)
244 2wf7_A Beta-PGM, beta-phosphog 20.8 40 0.0014 22.9 1.5 21 79-99 151-171 (221)
245 4ex6_A ALNB; modified rossman 20.7 34 0.0012 23.8 1.2 20 80-99 167-186 (237)
246 2e7z_A Acetylene hydratase AHY 20.7 49 0.0017 28.7 2.3 17 81-97 632-648 (727)
247 1eu1_A Dimethyl sulfoxide redu 20.7 50 0.0017 29.0 2.4 16 82-97 675-690 (780)
248 3r44_A Fatty acyl COA syntheta 20.6 64 0.0022 26.3 2.9 17 81-97 58-74 (517)
249 3m9l_A Hydrolase, haloacid deh 20.5 40 0.0014 23.1 1.5 21 79-99 133-153 (205)
250 1kqf_A FDH-N alpha, formate de 20.3 41 0.0014 30.9 1.9 16 82-97 926-941 (1015)
251 8abp_A L-arabinose-binding pro 20.3 33 0.0011 25.2 1.0 22 76-97 209-230 (306)
252 2ayi_A Aminopeptidase T; metal 20.3 1.1E+02 0.0038 25.4 4.4 27 64-97 5-31 (408)
253 3elv_A PRE-mRNA leakage protei 20.2 58 0.002 25.0 2.5 17 88-104 181-203 (205)
254 2rgy_A Transcriptional regulat 20.2 40 0.0014 24.7 1.5 21 76-96 201-222 (290)
255 1zg3_A Isoflavanone 4'-O-methy 20.2 1E+02 0.0035 23.9 4.0 33 50-82 46-80 (358)
256 3kxw_A Saframycin MX1 syntheta 20.2 66 0.0023 26.3 2.9 16 82-97 56-71 (590)
257 2vpz_A Thiosulfate reductase; 20.2 58 0.002 28.6 2.7 21 81-101 654-678 (765)
258 3rix_A Luciferase, luciferin 4 20.2 58 0.002 26.7 2.6 17 81-97 65-81 (550)
259 1wi2_A Riken cDNA 2700099C19; 20.2 42 0.0015 21.6 1.5 18 84-101 55-73 (104)
260 1jye_A Lactose operon represso 20.2 44 0.0015 25.5 1.7 22 76-97 250-272 (349)
261 4g9b_A Beta-PGM, beta-phosphog 20.2 44 0.0015 24.2 1.7 20 80-99 156-175 (243)
262 2wyq_A HHR23A, UV excision rep 20.2 41 0.0014 20.6 1.3 16 81-96 62-77 (85)
263 4dw8_A Haloacid dehalogenase-l 20.1 33 0.0011 25.1 1.0 23 77-99 200-222 (279)
264 3cyy_A Tight junction protein 20.0 52 0.0018 20.3 1.8 18 84-101 37-56 (92)
No 1
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.82 E-value=3.4e-20 Score=157.22 Aligned_cols=91 Identities=18% Similarity=0.287 Sum_probs=79.0
Q ss_pred hHHHHHHHHhhcccCC----------CCCcEEEEcCCCCeEEEEcchHHHHHHhcCCCCHHHHHHHHHHHHHCChHHHHH
Q 044269 15 NLNQVADLVNKQRSAS----------INDFEIFHDSGSNTWNVVGAGLQRFVQMTNWRYLDSERRFQHGLEACGVTKSLM 84 (129)
Q Consensus 15 ~l~~v~~~L~~~~~~~----------~~~f~I~k~~e~g~f~V~G~~IEr~v~~tnfd~~es~~rF~r~Lk~~GV~~aLk 84 (129)
++..++++|...+..+ .+.|+|.++ ++|+|+|+|+.+||+++||||+++|++.||+++|+++||+++|+
T Consensus 315 L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~l~ 393 (416)
T 1udx_A 315 LKEALHALVRSTPPPEMPKPVPRKEVQAGVEVVPV-AEGVYEVRAPEVERYLARIKGDLMEAAGYLQEVFRRQGVEAALR 393 (416)
T ss_dssp HHHHHHHHHHTSCCCCCCCCCC----CCCCEEEEE-ETTEEEEECHHHHHHHTTEEECTGGGHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHhcccccccccccccccCCCcEEEEc-CCCeEEEeChHHHHHHHhcCCCCHHHHHHHHHHHHHCCHHHHHH
Confidence 3477777776443211 237999886 58999999999999999999999999999999999999999999
Q ss_pred HcCCCCCCEEEEcCEEEEEEec
Q 044269 85 KLGVKEGDTVIVGDMEMVWHDS 106 (129)
Q Consensus 85 kaGakeGDtV~IGd~EFey~ed 106 (129)
++||++||+|+||++||+|+++
T Consensus 394 ~~g~~~gd~v~i~~~~f~~~~~ 415 (416)
T 1udx_A 394 AKGVRAGDLVRIGGLEFEYIPE 415 (416)
T ss_dssp TTTCCTTCEEEETTEEEECCCC
T ss_pred HcCCCCCCEEEEecEEEEEecC
Confidence 9999999999999999999874
No 2
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=92.22 E-value=0.095 Score=44.36 Aligned_cols=42 Identities=5% Similarity=0.017 Sum_probs=37.8
Q ss_pred CeEEEEcchHHHHHHhcCCCCHHHHHHHHHHHHHCChHHHHH
Q 044269 43 NTWNVVGAGLQRFVQMTNWRYLDSERRFQHGLEACGVTKSLM 84 (129)
Q Consensus 43 g~f~V~G~~IEr~v~~tnfd~~es~~rF~r~Lk~~GV~~aLk 84 (129)
+.+.+.++.+++++++++|++++++.+|++.|..+|+.=-..
T Consensus 234 ~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~G~il~f~ 275 (535)
T 3dpu_A 234 AQRYLNRTEVEKICNDSGITDPGERKTLLGYLNNLGIVLYFE 275 (535)
T ss_dssp HSSEECHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTSSBCCT
T ss_pred cCCcccHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcEEEEcC
Confidence 368999999999999999999999999999999999964443
No 3
>3lae_A UPF0053 protein HI0107; APC85784.2, conserved protein, haemophilus influenzae RD KW20, structural genomics, PSI-2; HET: MSE; 1.45A {Haemophilus influenzae} SCOP: d.145.1.4 PDB: 2o1r_A*
Probab=84.94 E-value=1.6 Score=28.23 Aligned_cols=59 Identities=15% Similarity=0.203 Sum_probs=38.9
Q ss_pred EEEcCCCCeEEEEcc-hHHHHHHhcCCC----CHHHHHHHHHHHHHCChHHHHHHcCCCCCCEEEEcCEEEEEE
Q 044269 36 IFHDSGSNTWNVVGA-GLQRFVQMTNWR----YLDSERRFQHGLEACGVTKSLMKLGVKEGDTVIVGDMEMVWH 104 (129)
Q Consensus 36 I~k~~e~g~f~V~G~-~IEr~v~~tnfd----~~es~~rF~r~Lk~~GV~~aLkkaGakeGDtV~IGd~EFey~ 104 (129)
|.+. ++|.|.|.|. .|+.+...++++ +++.+.=| ++..+| . =-+.||+|.++++.|+=.
T Consensus 3 i~~~-~dg~~~v~g~~~l~dl~~~l~~~l~~~~~~Tl~G~--i~~~lg------~-iP~~Gd~v~~~~~~f~V~ 66 (81)
T 3lae_A 3 AIQQ-SDGSMIIDGSANLRDLNKMFNWELDTEDARTFNGL--ILEHLE------E-IPDEGTICEIDGLLITIL 66 (81)
T ss_dssp EEEC-TTSCEEEETTCBHHHHHHHHCCCCCCSSCSBHHHH--HHHHCS------S-CCCTTCEEEETTEEEEEE
T ss_pred cEEe-CCCEEEEEeeCCHHHHHHHhCCCCCCCCCccHHHH--HHHHhC------C-CCCCCCEEEECCEEEEEE
Confidence 5555 4889999996 566666666653 33455444 223333 1 257899999999999853
No 4
>2p13_A CBS domain; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; 1.65A {Nitrosomonas europaea} SCOP: d.145.1.4
Probab=84.86 E-value=2.7 Score=27.57 Aligned_cols=59 Identities=12% Similarity=0.152 Sum_probs=38.7
Q ss_pred EEEEcCCCCeEEEEcc-hHHHHHHhcCCC------CHHHHHHHHHHHHHCChHHHHHHcCCCCCCEEEEcCEEEEE
Q 044269 35 EIFHDSGSNTWNVVGA-GLQRFVQMTNWR------YLDSERRFQHGLEACGVTKSLMKLGVKEGDTVIVGDMEMVW 103 (129)
Q Consensus 35 ~I~k~~e~g~f~V~G~-~IEr~v~~tnfd------~~es~~rF~r~Lk~~GV~~aLkkaGakeGDtV~IGd~EFey 103 (129)
.|.+. ++|.|.|.|. .|+.+-..++++ +++.+.=| ++..+| .=-+.||+|.++++.|+=
T Consensus 8 ~i~~~-~dg~~~v~G~~~l~dl~~~l~~~l~~~~~~~~TlgG~--i~~~lg-------~iP~~Gd~v~~~~~~f~V 73 (90)
T 2p13_A 8 VAEQQ-ADGTWLMDGWISIRKASNLLEHDLVDEAERYSTLGGY--LLWQFG-------YIPAAGEQITVDGLIFEI 73 (90)
T ss_dssp SEEEC-TTSCEEEETTSBHHHHHHHHTSCCCCTTCCCCBHHHH--HHHHHS-------SCCCTTCEEEETTEEEEE
T ss_pred ceEEe-CCCEEEEECcCCHHHHHHHHCCCCCCcCCCCccHHHH--HHHHhC-------CCCCCCCEEEECCEEEEE
Confidence 36665 4889999997 567776666653 24455444 223333 113779999999999984
No 5
>2pli_A Uncharacterized protein; CORC-associated region, MCSG, PSI2, structural genomics, Pro structure initiative; 1.70A {Neisseria meningitidis} SCOP: d.145.1.4
Probab=83.25 E-value=3.1 Score=27.43 Aligned_cols=60 Identities=15% Similarity=0.253 Sum_probs=39.0
Q ss_pred EEEcCCCCeEEEEcc-hHHHHHHhcCCC----CHHHHHHHHHHHHHCChHHHHHHcCCCCCCEEEEcCEEEEEEe
Q 044269 36 IFHDSGSNTWNVVGA-GLQRFVQMTNWR----YLDSERRFQHGLEACGVTKSLMKLGVKEGDTVIVGDMEMVWHD 105 (129)
Q Consensus 36 I~k~~e~g~f~V~G~-~IEr~v~~tnfd----~~es~~rF~r~Lk~~GV~~aLkkaGakeGDtV~IGd~EFey~e 105 (129)
|.+. ++|.|.|.|. .|+.+-..++++ +++.+.=| ++..+| .=-+.||+|.++++.|+=.+
T Consensus 12 i~~~-~dg~~~v~G~~~l~dl~~~l~~~l~~~~~dTlgG~--i~~~lg-------~iP~~Ge~v~~~~~~f~V~~ 76 (91)
T 2pli_A 12 IHAV-SSERWRIHAATEIEDINTFFGTEYSSEEADTIGGL--VIQELG-------HLPVRGEKVLIGGLQFTVAR 76 (91)
T ss_dssp EEEE-ETTEEEEETTCBHHHHHHHHCCCCCCSSCCBHHHH--HHHHHS-------SCCCTTCEEEETTEEEEEEE
T ss_pred eEEe-CCCEEEEEcCCCHHHHHHHhCCCCCCCCCccHHHH--HHHHhC-------CCCCCCCEEEECCEEEEEEE
Confidence 5554 4789999997 577777776653 34455433 222233 11367999999999998543
No 6
>2nqw_A CBS domain protein; PFAM03471, hemolysins, CBS domains, transporter associated D CORC_HLYC, structural genomics, PSI-2; 1.30A {Porphyromonas gingivalis} SCOP: d.145.1.4
Probab=79.56 E-value=6.2 Score=25.93 Aligned_cols=61 Identities=15% Similarity=0.082 Sum_probs=38.7
Q ss_pred EEEEcCCCCeEEEEcc-hHHHHHHhcCCC---------CHHHHHHHHHHHHHCChHHHHHHcCCCCCCEEEEcCEEEEEE
Q 044269 35 EIFHDSGSNTWNVVGA-GLQRFVQMTNWR---------YLDSERRFQHGLEACGVTKSLMKLGVKEGDTVIVGDMEMVWH 104 (129)
Q Consensus 35 ~I~k~~e~g~f~V~G~-~IEr~v~~tnfd---------~~es~~rF~r~Lk~~GV~~aLkkaGakeGDtV~IGd~EFey~ 104 (129)
.|.+. ++|.|.|.|. .|+.+...+++. +++.+.=| +|..+|= =-+.||+|.++++.|+=.
T Consensus 8 ~i~~~-~dg~~~v~G~~~l~dl~~~l~~~~~~~~~~~~~~~TlgG~--i~~~lg~-------iP~~Gd~v~~~~~~f~V~ 77 (93)
T 2nqw_A 8 PFKVL-GDGSYLFEGKTSLSDVRHYLDLPENAFGELGDEVDTLSGL--FLEIKQE-------LPHVGDTAVYEPFRFQVT 77 (93)
T ss_dssp CEEEC-TTSCEEEETTCBHHHHHHHHTCCTTTTHHHHTTCSBHHHH--HHHHHCS-------CCCTTCEEEETTEEEEEE
T ss_pred CeEEe-CCCEEEEEcccCHHHHHHHhCCCcccccccCCCcccHHHH--HHHHhCc-------CCCCCCEEEECCEEEEEE
Confidence 36665 4889999997 577777777662 23344333 1122221 136899999999999854
Q ss_pred e
Q 044269 105 D 105 (129)
Q Consensus 105 e 105 (129)
+
T Consensus 78 ~ 78 (93)
T 2nqw_A 78 Q 78 (93)
T ss_dssp E
T ss_pred E
Confidence 3
No 7
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=77.54 E-value=0.11 Score=34.88 Aligned_cols=16 Identities=50% Similarity=0.727 Sum_probs=14.0
Q ss_pred HHHHHcCCCCCCEEEE
Q 044269 81 KSLMKLGVKEGDTVIV 96 (129)
Q Consensus 81 ~aLkkaGakeGDtV~I 96 (129)
+.|+.+|+++||+++|
T Consensus 42 ~~Lr~LGi~eGDIIrV 57 (72)
T 3idw_A 42 SMLRTLGLREGDIVRV 57 (72)
T ss_dssp HHHHHTTCCHHHHHHH
T ss_pred HHHHHcCCchhhHHHH
Confidence 5799999999999876
No 8
>2pls_A CBS domain protein; APC86064.2, CORC/HLYC transporter associated domain, CBS DOM protein, structural genomics, PSI-2 structure initiative; 2.15A {Chlorobium tepidum tls} SCOP: d.145.1.4
Probab=76.78 E-value=8.4 Score=24.87 Aligned_cols=60 Identities=12% Similarity=0.133 Sum_probs=38.2
Q ss_pred EEEcCCCCeEEEEcc-hHHHHHHhcCCC-C-------HHHHHHHHHHHHHCChHHHHHHcCCCCCCEEEEcCEEEEEEe
Q 044269 36 IFHDSGSNTWNVVGA-GLQRFVQMTNWR-Y-------LDSERRFQHGLEACGVTKSLMKLGVKEGDTVIVGDMEMVWHD 105 (129)
Q Consensus 36 I~k~~e~g~f~V~G~-~IEr~v~~tnfd-~-------~es~~rF~r~Lk~~GV~~aLkkaGakeGDtV~IGd~EFey~e 105 (129)
|.+. ++|.|.|.|. .|+.+...++++ - ++.+.=| ++..+| .=-+.||+|.++++.|+=.+
T Consensus 3 i~~~-~dg~~~v~G~~~l~dl~~~l~~~~l~~~~~~~~~Tl~G~--i~~~lg-------~iP~~Gd~v~~~~~~f~V~~ 71 (86)
T 2pls_A 3 AVQR-EDGSWLLDGLIAVPELKDTLGLRAVPEEEKGVYHTLSGM--IMWLLG-------RLPQTGDITFWENWRLEVID 71 (86)
T ss_dssp EEEC-TTSCEEEETTCBHHHHHHHHTCSCCTTTTSCSCCBHHHH--HHHHHT-------SCCCTTCEEEETTEEEEEEE
T ss_pred eEEe-CCCeEEEEcccCHHHHHHHhCCCcCCCccCCCcccHHHH--HHHHhC-------CCCCCCCEEEECCEEEEEEE
Confidence 4454 4789999997 567777666654 2 3345433 122222 11378999999999998533
No 9
>2oai_A Hemolysin; PFAM03471, xylella fastidiosa temecula1, structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; HET: MLY; 1.80A {Xylella fastidiosa} SCOP: d.145.1.4 PDB: 2r8d_A*
Probab=76.58 E-value=8.5 Score=25.42 Aligned_cols=59 Identities=5% Similarity=0.036 Sum_probs=37.8
Q ss_pred EEEcCCCCeEEEEcc-hHHHHHHhcCCCC-------HHHHHHHHHHHHHCChHHHHHHcCCCCCCEEEEcCEEEEEE
Q 044269 36 IFHDSGSNTWNVVGA-GLQRFVQMTNWRY-------LDSERRFQHGLEACGVTKSLMKLGVKEGDTVIVGDMEMVWH 104 (129)
Q Consensus 36 I~k~~e~g~f~V~G~-~IEr~v~~tnfd~-------~es~~rF~r~Lk~~GV~~aLkkaGakeGDtV~IGd~EFey~ 104 (129)
|.+. ++|.|.|.|. .|+.+...++++- ++.+.=| ++..+| .=-+.||+|.++++.|+-.
T Consensus 12 i~~~-~dg~~~v~G~~~l~dl~~~l~~~l~~~~~~~~dTlgG~--i~~~lg-------~iP~~Gd~v~~~~~~f~V~ 78 (94)
T 2oai_A 12 MVTR-EDGSFLIDGTLPIEELREVLGAELPDGEENNYHTLAGM--CISYFG-------RIPHVGEYFDWAGWRIEIV 78 (94)
T ss_dssp EEEC-TTSCEEEETTCBHHHHHHHHTC-------CCCSBHHHH--HHHHHS-------SCCCTTCEEEETTEEEEEE
T ss_pred eEEe-CCCeEEEeccCCHHHHHHHhCCCCCcccCCCCccHHHH--HHHHhC-------CCCCCCCEEEECCEEEEEE
Confidence 6665 4889999997 5777777766642 3344433 122222 1136799999999999853
No 10
>3llb_A Uncharacterized protein; protein PA3983, unknown function, structural genomics, PSI2, MCSG, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: d.145.1.0
Probab=76.47 E-value=6.9 Score=25.22 Aligned_cols=59 Identities=17% Similarity=0.118 Sum_probs=37.8
Q ss_pred EEEcCCCCeEEEEcc-hHHHHHHhcCCC----CHHHHHHHHHHHHHCChHHHHHHcCCCCCCEEEEcCEEEEEE
Q 044269 36 IFHDSGSNTWNVVGA-GLQRFVQMTNWR----YLDSERRFQHGLEACGVTKSLMKLGVKEGDTVIVGDMEMVWH 104 (129)
Q Consensus 36 I~k~~e~g~f~V~G~-~IEr~v~~tnfd----~~es~~rF~r~Lk~~GV~~aLkkaGakeGDtV~IGd~EFey~ 104 (129)
|.+. ++|.|.|.|. .|+.+-..++++ +++.+.=| ++..+| .=-+.||+|.++++.|+=.
T Consensus 3 i~~~-~dg~~~v~G~~~l~dl~~~l~~~l~~~~~~Tl~G~--i~~~lg-------~iP~~Gd~v~~~~~~f~V~ 66 (83)
T 3llb_A 3 IKPL-PSGDFIVKALTPVDAFNDFFGSEFSDEEFDTVGGL--VMSAFG-------HLPKRNEVVELGEFRFRVL 66 (83)
T ss_dssp EEEC-TTSCEEEETTCBHHHHHHHHCCCCCTTTCSBHHHH--HHHHHS-------SCCCTTCEEEETTEEEEEE
T ss_pred eEEe-CCCEEEEEccCCHHHHHHHhCCCCCCCCCcCHHHH--HHHHhC-------cCCCCCCEEEECCEEEEEE
Confidence 5565 5889999996 566666666553 23444433 122222 1247899999999999843
No 11
>2r2z_A Hemolysin; APC85144, enterococcus faecalis V583, STRU initiative, midwest center for structural genomics, MCSG; 1.20A {Enterococcus faecalis} SCOP: d.145.1.4
Probab=76.28 E-value=4.6 Score=26.49 Aligned_cols=59 Identities=17% Similarity=0.221 Sum_probs=37.9
Q ss_pred EEEcCCCCeEEEEcc-hHHHHHHhcCCC----CHHHHHHHHHHHHHCChHHHHHHcCCCCCCEEEE--cCEEEEEE
Q 044269 36 IFHDSGSNTWNVVGA-GLQRFVQMTNWR----YLDSERRFQHGLEACGVTKSLMKLGVKEGDTVIV--GDMEMVWH 104 (129)
Q Consensus 36 I~k~~e~g~f~V~G~-~IEr~v~~tnfd----~~es~~rF~r~Lk~~GV~~aLkkaGakeGDtV~I--Gd~EFey~ 104 (129)
|.+. ++|.|.|.|. .|+.+-..++++ +++.+.=| ++..+| .=-+.||+|.+ +++.|+=.
T Consensus 10 i~~~-~dg~~~v~G~~~l~dl~~~l~~~l~~~~~~TlgG~--i~~~lg-------~iP~~Gd~v~~~~~~~~f~V~ 75 (93)
T 2r2z_A 10 YTQV-ADNEYLVQGRMLIDEFNEVFETDLHMSDVDTMAGY--LITALG-------TIPDEGEKPSFEVGNIKLTAE 75 (93)
T ss_dssp EEEE-ETTEEEEETTSBHHHHHHHHTCCCCCTTCCBHHHH--HHHHHS-------SCCCTTCCCEEEETTEEEEEE
T ss_pred eEEe-CCCEEEEECCCCHHHHHHHhCCCCCCCCcccHHHH--HHHHhC-------CCCCCCCEEEEecCCEEEEEE
Confidence 5554 4789999997 567777666653 34455433 222233 11367999988 99999853
No 12
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=74.08 E-value=2.9 Score=28.14 Aligned_cols=15 Identities=47% Similarity=0.678 Sum_probs=12.2
Q ss_pred HHHcCCCCCCEEEEc
Q 044269 83 LMKLGVKEGDTVIVG 97 (129)
Q Consensus 83 LkkaGakeGDtV~IG 97 (129)
.+..|++.||.|+|=
T Consensus 44 ar~~G~k~GdVvkI~ 58 (78)
T 1hmj_A 44 IQEIGAKEGDVVRVI 58 (78)
T ss_pred hHHhCCCCCCEEEEE
Confidence 455599999999983
No 13
>3ded_A Probable hemolysin; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG, membrane; HET: MSE; 2.14A {Chromobacterium violaceum} SCOP: d.145.1.4
Probab=73.91 E-value=11 Score=25.97 Aligned_cols=60 Identities=18% Similarity=0.191 Sum_probs=39.6
Q ss_pred EEEEcCCCCeEEEEcc-hHHHHHHhcCCC--C-------HHHHHHHHHHHHHCChHHHHHHcCCCCCCEEEEcCEEEEEE
Q 044269 35 EIFHDSGSNTWNVVGA-GLQRFVQMTNWR--Y-------LDSERRFQHGLEACGVTKSLMKLGVKEGDTVIVGDMEMVWH 104 (129)
Q Consensus 35 ~I~k~~e~g~f~V~G~-~IEr~v~~tnfd--~-------~es~~rF~r~Lk~~GV~~aLkkaGakeGDtV~IGd~EFey~ 104 (129)
.|.+. .+|.|.|.|. .|+.+...++++ - ++.+.=| +|..+| .=-+.||+|.++++.|+-.
T Consensus 28 ~i~~~-~dg~~~v~G~~~l~dl~e~lg~~~~l~~~~~~~~dTlgGl--il~~lg-------~iP~~Gd~v~~~g~~f~V~ 97 (113)
T 3ded_A 28 EIVQR-EDGSWLVDGMVSLDRFREFFELEAPLPGEAGGNIHTLAGV--MLYQLG-------RVPSVTDRFEWNGFSFEVV 97 (113)
T ss_dssp CEEEC-TTSCEEEETTCBHHHHHHHTTCCSCCTTGGGTCCCBHHHH--HHHHHC-------SSCCTTCEEEETTEEEEEE
T ss_pred ceEEe-cCCEEEEecccCHHHHHHHhCCCccCCcccCCCCccHHHH--HHHHhC-------CCCCCCCEEEECCEEEEEE
Confidence 46665 5889999996 677777777765 2 3455433 122222 1257899999999999853
No 14
>2p4p_A Hypothetical protein HD1797; CORC_HLYC, PFAM: PF03471, structural GE PSI-2, protein structure initiative, midwest center for STR genomics; HET: MLY MSE; 1.80A {Haemophilus ducreyi} SCOP: d.145.1.4
Probab=71.49 E-value=9.2 Score=24.72 Aligned_cols=56 Identities=16% Similarity=0.191 Sum_probs=37.2
Q ss_pred CCCeEEEEcc-hHHHHHHhcCCC------CHHHHHHHHHHHHHCChHHHHHHcCCCCCCEEEEcCEEEEEEe
Q 044269 41 GSNTWNVVGA-GLQRFVQMTNWR------YLDSERRFQHGLEACGVTKSLMKLGVKEGDTVIVGDMEMVWHD 105 (129)
Q Consensus 41 e~g~f~V~G~-~IEr~v~~tnfd------~~es~~rF~r~Lk~~GV~~aLkkaGakeGDtV~IGd~EFey~e 105 (129)
++|.|.|.|. .|+.+...++++ +++.+.=| ++..+| .=-+.||+|.++++.|+=.+
T Consensus 7 ~dg~~~v~G~~~l~dl~~~l~~~~l~~~~~~~Tl~G~--i~~~lg-------~iP~~Gd~v~~~~~~f~V~~ 69 (86)
T 2p4p_A 7 NEDSWLIDGATPLEDVMRALNIHTFPRDENYETIGGF--MMYMLR-------XIPXXTDFVLYDXYXFEIID 69 (86)
T ss_dssp CCSEEEEETTSBHHHHHHHTTCCCSCCSCSSCBHHHH--HHHHHC-------SCCCTTCEEEETTEEEEEEE
T ss_pred CCCEEEEEccCCHHHHHHHhCCCCCCcCCCCccHHHH--HHHHhC-------CCCCCCcEEEEeeEEEEEEE
Confidence 4789999997 677777777664 24455433 222233 11378999999999998543
No 15
>2nyg_A YOKD protein; PFAM02522, NYSGXRC, aminoglycoside 3-N- acetyltransferase, PSI-2, structural genomics, protein structure initiative; HET: COA; 2.60A {Bacillus subtilis} SCOP: c.140.1.2
Probab=69.24 E-value=2.7 Score=33.70 Aligned_cols=19 Identities=47% Similarity=0.712 Sum_probs=16.9
Q ss_pred hHHHHHHcCCCCCCEEEEc
Q 044269 79 VTKSLMKLGVKEGDTVIVG 97 (129)
Q Consensus 79 V~~aLkkaGakeGDtV~IG 97 (129)
+.++|++.||++||+|.+.
T Consensus 18 L~~~L~~LGI~~Gd~llVH 36 (273)
T 2nyg_A 18 ITEDLKALGLKKGMTVLVH 36 (273)
T ss_dssp HHHHHHHHTCCTTCEEEEE
T ss_pred HHHHHHHcCCCCCCEEEEE
Confidence 5788999999999999874
No 16
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=68.91 E-value=3.8 Score=27.44 Aligned_cols=21 Identities=14% Similarity=0.178 Sum_probs=18.2
Q ss_pred cCCCCCCEEEEcCEEEEEEec
Q 044269 86 LGVKEGDTVIVGDMEMVWHDS 106 (129)
Q Consensus 86 aGakeGDtV~IGd~EFey~ed 106 (129)
.=+++||.|.||+.+|.|.+.
T Consensus 82 ~~L~~Gd~i~~G~~~~~~~~~ 102 (106)
T 3gqs_A 82 STLSANQVVALGTTLFLLVDY 102 (106)
T ss_dssp EECCTTCCEEETTEEEEEEEE
T ss_pred eECCCCCEEEECCEEEEEEcc
Confidence 358899999999999999764
No 17
>2cqa_A RUVB-like 2; TIP48, TIP49B, reptin 52, ECP-51, TAP54-beta, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.40.4.14
Probab=67.87 E-value=3.9 Score=28.42 Aligned_cols=19 Identities=32% Similarity=0.489 Sum_probs=16.7
Q ss_pred hHHHHHHcCCCCCCEEEEc
Q 044269 79 VTKSLMKLGVKEGDTVIVG 97 (129)
Q Consensus 79 V~~aLkkaGakeGDtV~IG 97 (129)
+.++|.+.+++.||.|.|.
T Consensus 54 i~e~L~kekV~~GDVI~Id 72 (95)
T 2cqa_A 54 MIESLTKDKVQAGDVITID 72 (95)
T ss_dssp HHHHHHHTTCCTTSEEEEE
T ss_pred HHHHHHHcCceeCCEEEEE
Confidence 5688999999999999983
No 18
>3ijw_A Aminoglycoside N3-acetyltransferase; anthrax, COA, acyltransferase, structural genom center for structural genomics of infectious diseases; HET: MSE ACO; 1.90A {Bacillus anthracis} SCOP: c.140.1.0 PDB: 3slf_A* 3n0s_A* 3slb_A* 3n0m_A* 3kzl_A* 3e4f_A*
Probab=67.85 E-value=3 Score=33.50 Aligned_cols=19 Identities=58% Similarity=0.784 Sum_probs=16.6
Q ss_pred hHHHHHHcCCCCCCEEEEc
Q 044269 79 VTKSLMKLGVKEGDTVIVG 97 (129)
Q Consensus 79 V~~aLkkaGakeGDtV~IG 97 (129)
+.+.|++.||++||+|.+.
T Consensus 20 l~~~L~~LGi~~Gd~llVH 38 (268)
T 3ijw_A 20 ITNDLRKLGLKKGMTVIVH 38 (268)
T ss_dssp HHHHHHHHTCCTTCEEEEE
T ss_pred HHHHHHHcCCCCCCEEEEE
Confidence 5778999999999999874
No 19
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A
Probab=67.50 E-value=7.8 Score=28.52 Aligned_cols=28 Identities=18% Similarity=0.356 Sum_probs=21.5
Q ss_pred HcCCCCCCEEEEcCEEEEEEecCCCCCC
Q 044269 85 KLGVKEGDTVIVGDMEMVWHDSANNPGP 112 (129)
Q Consensus 85 kaGakeGDtV~IGd~EFey~ed~~~~~~ 112 (129)
..=+++||.|.||++.|.|...-..+.+
T Consensus 128 ~~~L~~GD~I~iG~~~l~f~~~~~~~~~ 155 (162)
T 2kfu_A 128 SAVLANGDEVQIGKFRLVFLTGPKQGED 155 (162)
T ss_dssp EEECCSSCEEEETTEEEEEECSCSSCCC
T ss_pred eEECCCCCEEEECCEEEEEEeCCcccCC
Confidence 3568999999999999999765444433
No 20
>3sma_A FRBF; N-acetyl transferase, acetyl COA binding, transferase; HET: ACO; 2.00A {Streptomyces rubellomurinus}
Probab=65.75 E-value=3.5 Score=33.56 Aligned_cols=19 Identities=32% Similarity=0.621 Sum_probs=16.6
Q ss_pred hHHHHHHcCCCCCCEEEEc
Q 044269 79 VTKSLMKLGVKEGDTVIVG 97 (129)
Q Consensus 79 V~~aLkkaGakeGDtV~IG 97 (129)
+.++|++.||++||+|.+.
T Consensus 27 L~~~L~~LGI~~Gd~llVH 45 (286)
T 3sma_A 27 LASDLAALGVRPGGVLLVH 45 (286)
T ss_dssp HHHHHHHHTCCTTCEEEEE
T ss_pred HHHHHHHcCCCCCCEEEEE
Confidence 5678999999999999874
No 21
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B
Probab=65.35 E-value=5.6 Score=28.18 Aligned_cols=20 Identities=10% Similarity=0.408 Sum_probs=17.5
Q ss_pred cCCCCCCEEEEcCEEEEEEe
Q 044269 86 LGVKEGDTVIVGDMEMVWHD 105 (129)
Q Consensus 86 aGakeGDtV~IGd~EFey~e 105 (129)
.=+++||+|.||+.+|.|..
T Consensus 106 ~~L~~GD~I~lG~~~l~f~~ 125 (132)
T 3va4_A 106 HRLRDQELILFADFPCQYHR 125 (132)
T ss_dssp EECCTTCEEEETTEEEEEEE
T ss_pred EECCCCCEEEECCEEEEEEE
Confidence 34889999999999999865
No 22
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis}
Probab=62.23 E-value=5.5 Score=27.04 Aligned_cols=20 Identities=25% Similarity=0.511 Sum_probs=17.5
Q ss_pred cCCCCCCEEEEcCEEEEEEe
Q 044269 86 LGVKEGDTVIVGDMEMVWHD 105 (129)
Q Consensus 86 aGakeGDtV~IGd~EFey~e 105 (129)
.=+++||.|.||+.+|.|..
T Consensus 85 ~~L~~gd~i~iG~~~l~~~~ 104 (115)
T 2xt9_B 85 AVLANGDEVQIGKFRLVFLT 104 (115)
T ss_dssp EEECTTCEEEETTEEEEEEC
T ss_pred EECCCCCEEEECCEEEEEEe
Confidence 45889999999999999864
No 23
>2rk5_A Putative hemolysin; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics, membrane; 1.50A {Streptococcus mutans UA159} SCOP: d.145.1.4
Probab=61.64 E-value=18 Score=23.34 Aligned_cols=58 Identities=21% Similarity=0.231 Sum_probs=36.9
Q ss_pred EEEcCCCCeEEEEcc-hHHHHHHhcCCC----CHHHHHHHHHHHHHCChHHHHHHcCCCCCC--EEEEcC----EEEEE
Q 044269 36 IFHDSGSNTWNVVGA-GLQRFVQMTNWR----YLDSERRFQHGLEACGVTKSLMKLGVKEGD--TVIVGD----MEMVW 103 (129)
Q Consensus 36 I~k~~e~g~f~V~G~-~IEr~v~~tnfd----~~es~~rF~r~Lk~~GV~~aLkkaGakeGD--tV~IGd----~EFey 103 (129)
|.+. ++|.|.|.|. .|+.+...++++ +++.+.=| ++..+| + =-+.|| +|.+++ +.|+=
T Consensus 2 i~~~-~dg~~~v~G~~~l~dl~~~l~~~l~~~~~dTl~G~--v~~~lg------~-iP~~Gd~~~v~~~~~~~~~~f~V 70 (87)
T 2rk5_A 2 SREI-ADNTYIVLGTMTLNDFNEYFETDLESDNVDTIAGF--YLTGVG------T-IPSQEEKEHFEVESNGKHLELIN 70 (87)
T ss_dssp EEEE-ETTEEEEETTSBHHHHHHHHTCCCCCTTCCBHHHH--HHHHHC------S-CCCSSSCCEEEEEETTEEEEEEE
T ss_pred eEEe-CCCEEEEEccCCHHHHHHHhCCCCCCCCcccHHHH--HHHHhC------c-CCCCCCcEEEEECCceEEEEEEE
Confidence 4444 3789999997 567777666653 34455433 222232 1 136799 999998 88874
No 24
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A
Probab=60.93 E-value=7.7 Score=25.51 Aligned_cols=20 Identities=20% Similarity=0.504 Sum_probs=17.0
Q ss_pred HcCCCCCCEEEEcCEEEEEE
Q 044269 85 KLGVKEGDTVIVGDMEMVWH 104 (129)
Q Consensus 85 kaGakeGDtV~IGd~EFey~ 104 (129)
..=+++||.|.||+.+|.|.
T Consensus 76 ~~~L~~gd~i~iG~~~~~~~ 95 (100)
T 3po8_A 76 EWQLADGDVIRLGHSEIIVR 95 (100)
T ss_dssp EEECCTTCEEEETTEEEEEE
T ss_pred eEECCCCCEEEECCEEEEEE
Confidence 35689999999999998874
No 25
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=59.12 E-value=7.8 Score=31.38 Aligned_cols=26 Identities=23% Similarity=0.417 Sum_probs=20.5
Q ss_pred HcCCCCCCEEEEcCEEEEEEecCCCC
Q 044269 85 KLGVKEGDTVIVGDMEMVWHDSANNP 110 (129)
Q Consensus 85 kaGakeGDtV~IGd~EFey~ed~~~~ 110 (129)
..=+++||+|.||+.+|.|......+
T Consensus 360 ~~~L~~gd~i~~G~~~~~~~~~~~~p 385 (388)
T 2ff4_A 360 AVTLNDGDHIRICDHEFTFQISAGTH 385 (388)
T ss_dssp EEEECTTCEEEETTEEEEEECSCCCC
T ss_pred ceECCCCCEEEECCEEEEEEeCCCCC
Confidence 45688999999999999997654443
No 26
>1ioo_A SF11-RNAse; SELF-incompatibility ribonuclease, hydrolase; HET: NAG BMA MAN; 1.55A {Nicotiana alata} SCOP: d.124.1.1
Probab=58.94 E-value=7.5 Score=28.80 Aligned_cols=32 Identities=13% Similarity=0.251 Sum_probs=25.6
Q ss_pred HHHHHHHHHH---HHCChHHHHHHcCCCCCCEEEE
Q 044269 65 DSERRFQHGL---EACGVTKSLMKLGVKEGDTVIV 96 (129)
Q Consensus 65 es~~rF~r~L---k~~GV~~aLkkaGakeGDtV~I 96 (129)
....||+..| ++..+.+.|+++||.+|.++.+
T Consensus 100 ~q~~YF~~a~~L~~~~n~~~~L~~~gI~P~~~~t~ 134 (196)
T 1ioo_A 100 NQNTYFGLALRLKDKFDLLRTLQTHRIIPGSSYTF 134 (196)
T ss_dssp CHHHHHHHHHHHHHTCCHHHHHHHTTCCTTEEECH
T ss_pred CHHHHHHHHHHHHHHCCHHHHHHHCCCccCCCcCH
Confidence 3567887665 6799999999999999987543
No 27
>2ki8_A Tungsten formylmethanofuran dehydrogenase, subunit D (FWDD-2); beta-barrel, structural genomics, PSI-2, protein structure initiative; NMR {Archaeoglobus fulgidus}
Probab=58.18 E-value=5.8 Score=28.41 Aligned_cols=17 Identities=41% Similarity=0.601 Sum_probs=13.9
Q ss_pred HHHHHcCCCCCCEEEEc
Q 044269 81 KSLMKLGVKEGDTVIVG 97 (129)
Q Consensus 81 ~aLkkaGakeGDtV~IG 97 (129)
+..++.|+++||.|+|.
T Consensus 60 ~dA~~lGI~dGd~V~V~ 76 (146)
T 2ki8_A 60 EDWNALGLQEGDRVKVK 76 (146)
T ss_dssp HHHHHHTCCTTCEEEEE
T ss_pred HHHHHcCCCCCCEEEEE
Confidence 34577899999999984
No 28
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=58.18 E-value=8.2 Score=23.12 Aligned_cols=15 Identities=47% Similarity=0.547 Sum_probs=11.9
Q ss_pred HHHHcCCCCCCEEEE
Q 044269 82 SLMKLGVKEGDTVIV 96 (129)
Q Consensus 82 aLkkaGakeGDtV~I 96 (129)
..++.|+++||.|.+
T Consensus 20 ir~~lgi~~Gd~v~i 34 (53)
T 2l66_A 20 VRQKFQIKEGDLVKV 34 (53)
T ss_dssp HHHHSCCCTTCEEEE
T ss_pred HHHHcCcCCCCEEEE
Confidence 456779999999764
No 29
>1bol_A Protein (ribonuclease RH); ribonucleases, hydrolase; 2.00A {Rhizopus niveus} SCOP: d.124.1.1
Probab=58.17 E-value=4.1 Score=31.16 Aligned_cols=33 Identities=24% Similarity=0.305 Sum_probs=26.4
Q ss_pred HHHHHHHHHHH---HHCChHHHHHHcCCCCCCEEEE
Q 044269 64 LDSERRFQHGL---EACGVTKSLMKLGVKEGDTVIV 96 (129)
Q Consensus 64 ~es~~rF~r~L---k~~GV~~aLkkaGakeGDtV~I 96 (129)
.+...||+..| +++.+.+.|+++||.+|.++.+
T Consensus 128 ~~~~~YF~~al~L~~~~n~~~~L~~~gI~P~~~yt~ 163 (222)
T 1bol_A 128 EDIVDYFQKAMDLRSQYNVYKAFSSNGITPGGTYTA 163 (222)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHTTTCCSSEEEEH
T ss_pred ccHHHHHHHHHHHHHHcCcHHHHHHcCCCCCCcCcH
Confidence 36778888765 5789999999999999987543
No 30
>3p6d_A Fatty acid-binding protein, adipocyte; lipocalin, beta barrel, lipid BI protein; HET: ZGB; 1.06A {Homo sapiens} SCOP: b.60.1.2 PDB: 3p6c_A* 3p6e_A* 3p6f_A* 3p6g_A* 3p6h_A* 3rzy_A 2hnx_A* 3fr4_A* 2nnq_A* 1tow_A* 1tou_A* 3fr2_A* 3fr5_A* 1adl_A* 1alb_A 1lib_A 1lic_A* 1lid_A* 1lie_A* 1lif_A* ...
Probab=57.89 E-value=2.4 Score=30.63 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=21.9
Q ss_pred HHHHHHHCChHHHHHHcCC---------CCCCEEEE
Q 044269 70 FQHGLEACGVTKSLMKLGV---------KEGDTVIV 96 (129)
Q Consensus 70 F~r~Lk~~GV~~aLkkaGa---------keGDtV~I 96 (129)
|...|+++||..++++++. ++||.+.|
T Consensus 24 fdeymkalGv~~~~rk~a~~~kp~~~I~~~Gd~~ti 59 (139)
T 3p6d_A 24 FDDYMKEVGVGFATRKVAGMAKPNMIISVNGDVITI 59 (139)
T ss_dssp HHHHHHHHTCCHHHHHHHHHCCCEEEEEEETTEEEE
T ss_pred HHHHHHHhCCcHHHHHHHHhCCCeEEEEEcCCEEEE
Confidence 6667899999999999997 45777666
No 31
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A*
Probab=55.41 E-value=6.1 Score=27.25 Aligned_cols=22 Identities=18% Similarity=0.421 Sum_probs=18.8
Q ss_pred HcCCCCCCEEEEcCEEEEEEec
Q 044269 85 KLGVKEGDTVIVGDMEMVWHDS 106 (129)
Q Consensus 85 kaGakeGDtV~IGd~EFey~ed 106 (129)
..-+++||.|.||+..|.|...
T Consensus 87 ~~~L~~Gd~i~iG~~~~~~~~~ 108 (128)
T 1r21_A 87 PVRLKHGDVITIIDRSFRYENE 108 (128)
T ss_dssp CEECCTTEEEECSSCEEEEEEC
T ss_pred cEEcCCCCEEEECCEEEEEEeC
Confidence 3568999999999999999764
No 32
>2p3h_A Uncharacterized CBS domain-containing protein; structural genomics, CORC_HLYC, PFAM03471, putative transpor protein; 1.80A {Corynebacterium glutamicum} SCOP: d.145.1.4
Probab=54.73 E-value=11 Score=25.59 Aligned_cols=56 Identities=13% Similarity=0.285 Sum_probs=35.2
Q ss_pred EEEcCCCCeEEEEcc-hHHHHHHhcCCC----CHHHHHHHHHHHHHCChHHHHHHcCCCCCCEEEEcCEEEE
Q 044269 36 IFHDSGSNTWNVVGA-GLQRFVQMTNWR----YLDSERRFQHGLEACGVTKSLMKLGVKEGDTVIVGDMEMV 102 (129)
Q Consensus 36 I~k~~e~g~f~V~G~-~IEr~v~~tnfd----~~es~~rF~r~Lk~~GV~~aLkkaGakeGDtV~IGd~EFe 102 (129)
|.+. ++|.|.|.|. .|+.+-..++++ +++.+.=| ++..+| .=-+.||+|.++ +.|+
T Consensus 6 i~~~-~dg~~~v~G~~~l~dl~~~lg~~l~~e~~dTlgGl--i~~~lg-------~iP~~Gd~v~~~-~~f~ 66 (101)
T 2p3h_A 6 ITET-SPDKWLIDGDTPLDEVERAIGYELPEGDYETISGL--LFDHAN-------ALLKTGDVIEIP-LDFE 66 (101)
T ss_dssp EEEE-ETTEEEEETTCBHHHHHHHHTSCCCCSSCCBHHHH--HHHHHC-------SCCCTTCEEEEE-CCCC
T ss_pred eEEe-CCCEEEEEccCCHHHHHHHhCCCCCCCCCccHHHH--HHHHhC-------CCCCCCCEEEEe-EEEE
Confidence 5554 4789999997 567776666653 34555433 223333 113789999998 7776
No 33
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A
Probab=54.12 E-value=9 Score=27.42 Aligned_cols=21 Identities=19% Similarity=0.476 Sum_probs=18.1
Q ss_pred HcCCCCCCEEEEcCEEEEEEe
Q 044269 85 KLGVKEGDTVIVGDMEMVWHD 105 (129)
Q Consensus 85 kaGakeGDtV~IGd~EFey~e 105 (129)
..-+++||.|.||++.|.|..
T Consensus 119 ~~~L~~GD~I~iG~~~l~f~~ 139 (143)
T 2kb3_A 119 AQVMQTGDEIQIGKFRLVFLA 139 (143)
T ss_dssp EEECCTTEEEEETTEEEEEEE
T ss_pred eEECCCCCEEEECCEEEEEEe
Confidence 356899999999999999864
No 34
>1eik_A RNA polymerase subunit RPB5; RPBH, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.78.1.1
Probab=53.24 E-value=7.3 Score=26.03 Aligned_cols=15 Identities=33% Similarity=0.461 Sum_probs=12.0
Q ss_pred HHHcCCCCCCEEEEc
Q 044269 83 LMKLGVKEGDTVIVG 97 (129)
Q Consensus 83 LkkaGakeGDtV~IG 97 (129)
.+.-|++.||.|+|=
T Consensus 46 ar~~G~k~GdVvkI~ 60 (77)
T 1eik_A 46 AKAIGAKRGDIVKII 60 (77)
T ss_dssp HHGGGCCTTCEEEEE
T ss_pred hHHhCCCCCCEEEEE
Confidence 344499999999984
No 35
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=53.08 E-value=11 Score=23.60 Aligned_cols=15 Identities=27% Similarity=0.388 Sum_probs=11.9
Q ss_pred HHHHcCCCCCCEEEE
Q 044269 82 SLMKLGVKEGDTVIV 96 (129)
Q Consensus 82 aLkkaGakeGDtV~I 96 (129)
..++.|+++||.|.|
T Consensus 30 iR~~Lgi~~Gd~l~i 44 (59)
T 1yfb_A 30 LRRTLGIAEKDALEI 44 (59)
T ss_dssp HHHHTTCCTTCEEEE
T ss_pred HHHHcCCCCCCEEEE
Confidence 345679999999875
No 36
>2g7b_A Cellular retinoic acid-binding protein 2; crabpii, retinoids, beta barrel, crystallography, X-RAY, high resolution, schiff base; HET: AZE; 1.18A {Homo sapiens} PDB: 3d97_A* 3fa8_A 3i17_B 3fa7_A* 3fa9_A 3d95_A 3cwk_A 3f8a_A* 3fep_A* 3fek_B 3fa6_A 1bm5_A 1xca_A 3fel_A* 3f9d_A* 3cr6_A* 3fen_A 1blr_A 1cbq_A* 1cbs_A* ...
Probab=52.32 E-value=4.3 Score=28.93 Aligned_cols=28 Identities=43% Similarity=0.597 Sum_probs=22.2
Q ss_pred HHHHHHHCChHHHHHHcCC----C-------CCCEEEEc
Q 044269 70 FQHGLEACGVTKSLMKLGV----K-------EGDTVIVG 97 (129)
Q Consensus 70 F~r~Lk~~GV~~aLkkaGa----k-------eGDtV~IG 97 (129)
|...|+++||..++++++. + +||.+.|-
T Consensus 15 fdeylkalGv~~~~rk~a~~~~~kp~~ei~~~Gd~~tik 53 (137)
T 2g7b_A 15 FEELLKVLGVNVMLRKIAVAAASKPAVEIKQEGDTFYIK 53 (137)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHSSCEEEEEEETTEEEEE
T ss_pred HHHHHHHcCCCHHHHhhhhcccCCceEEEEECCCEEEEE
Confidence 6778999999999999984 3 67776553
No 37
>3d3z_A Actibind; RNAse, hydrolase; HET: NAG D3Z; 1.70A {Aspergillus niger}
Probab=49.48 E-value=16 Score=28.45 Aligned_cols=29 Identities=14% Similarity=0.197 Sum_probs=24.1
Q ss_pred HHHHHHHHHHH---HHCChHHHHHHcCCCCCC
Q 044269 64 LDSERRFQHGL---EACGVTKSLMKLGVKEGD 92 (129)
Q Consensus 64 ~es~~rF~r~L---k~~GV~~aLkkaGakeGD 92 (129)
.+...||+..| +++.+.+.|+++||.+|+
T Consensus 134 ~~~~~YF~~al~L~~k~n~~~~L~~~gI~P~~ 165 (247)
T 3d3z_A 134 EEVGDFFQQVVDLFKTLDSYTALSDAGITPSE 165 (247)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHTTCCCCS
T ss_pred cCHHHHHHHHHHHHHhcCcHHHHHHCCccCCC
Confidence 46788998776 578899999999999876
No 38
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=48.40 E-value=16 Score=24.82 Aligned_cols=19 Identities=16% Similarity=0.230 Sum_probs=16.2
Q ss_pred CCCCCCEEEEcC-EEEEEEe
Q 044269 87 GVKEGDTVIVGD-MEMVWHD 105 (129)
Q Consensus 87 GakeGDtV~IGd-~EFey~e 105 (129)
-+++||.|.||+ ..|.|..
T Consensus 94 ~L~~GD~I~iG~~~~~~f~~ 113 (120)
T 1wln_A 94 MLQSGMRLQFGTSHVFKFVD 113 (120)
T ss_dssp EECTTCEEEETTTEEEEEEC
T ss_pred ECCCCCEEEECCceEEEEEC
Confidence 568899999999 8888864
No 39
>1ggl_A Protein (cellular retinol-binding protein III); carrier, transport protein; 2.31A {Homo sapiens} SCOP: b.60.1.2
Probab=47.38 E-value=4.4 Score=28.92 Aligned_cols=20 Identities=15% Similarity=0.278 Sum_probs=17.9
Q ss_pred HHHHHHHCChHHHHHHcCCC
Q 044269 70 FQHGLEACGVTKSLMKLGVK 89 (129)
Q Consensus 70 F~r~Lk~~GV~~aLkkaGak 89 (129)
|...|+++||..++++++..
T Consensus 16 fdeylkalGv~~~~rk~a~~ 35 (134)
T 1ggl_A 16 MEDYLQALNISLAVRKIALL 35 (134)
T ss_dssp HHHHHHHTTCCTTTTTTGGG
T ss_pred HHHHHHHhCCCHHHHhhhhc
Confidence 67789999999999999976
No 40
>3elx_A Ileal bIle acid-binding protein; ileal bIle acid-bindign protein, zebrafish, cholic acid, LIP binding, transport, lipid binding protein; 1.60A {Danio rerio} SCOP: b.60.1.0 PDB: 3elz_A* 3em0_A*
Probab=46.74 E-value=17 Score=26.05 Aligned_cols=20 Identities=10% Similarity=0.262 Sum_probs=17.8
Q ss_pred HHHHHHHCChHHHHHHcCCC
Q 044269 70 FQHGLEACGVTKSLMKLGVK 89 (129)
Q Consensus 70 F~r~Lk~~GV~~aLkkaGak 89 (129)
|...|+++||..+++++|..
T Consensus 18 fdeymkalGv~~~~Rk~~~~ 37 (138)
T 3elx_A 18 YEPFCKLIGIPDDVIAKGRD 37 (138)
T ss_dssp HHHHHHHTTCCHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHhHHhc
Confidence 66778999999999999985
No 41
>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}
Probab=45.81 E-value=14 Score=29.95 Aligned_cols=19 Identities=32% Similarity=0.592 Sum_probs=13.9
Q ss_pred HHHHHHcCCCCCCEEEEcC
Q 044269 80 TKSLMKLGVKEGDTVIVGD 98 (129)
Q Consensus 80 ~~aLkkaGakeGDtV~IGd 98 (129)
.++|.+.||.++|+|.|+|
T Consensus 102 ~~~l~~lGI~~d~~VVvYD 120 (327)
T 3utn_X 102 DDAMSNLGVQKDDILVVYD 120 (327)
T ss_dssp HHHHHHTTCCTTCEEEEEC
T ss_pred HHHHHHcCCCCCCEEEEEe
Confidence 3445555788999999975
No 42
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=45.75 E-value=25 Score=24.93 Aligned_cols=20 Identities=20% Similarity=0.474 Sum_probs=15.1
Q ss_pred cCCCCCCEEEEcC---EEEEEEe
Q 044269 86 LGVKEGDTVIVGD---MEMVWHD 105 (129)
Q Consensus 86 aGakeGDtV~IGd---~EFey~e 105 (129)
.=+++||+|.||+ +.|.|..
T Consensus 101 ~~L~~GD~I~lG~~~~~~f~~~~ 123 (151)
T 2jqj_A 101 YILKNGDRIVFGKSCSFLFKYAS 123 (151)
T ss_dssp EEECSSEEEEETTTEEEEEEECS
T ss_pred eECCCCCEEEECCCcEEEEEEcC
Confidence 3478999999998 5666644
No 43
>1jy5_A CALSEPRRP; RNAse, alpha-beta protein, hydrolase; 2.05A {Calystegia sepium} SCOP: d.124.1.1
Probab=45.75 E-value=6.2 Score=29.66 Aligned_cols=31 Identities=13% Similarity=0.084 Sum_probs=24.5
Q ss_pred HHHHHHHHHH---HHCChHHHHHHcCCCC--CCEEE
Q 044269 65 DSERRFQHGL---EACGVTKSLMKLGVKE--GDTVI 95 (129)
Q Consensus 65 es~~rF~r~L---k~~GV~~aLkkaGake--GDtV~ 95 (129)
+...||+..| ++..+.+.|+++||.+ |.++.
T Consensus 115 ~~~~YF~~a~~l~~~~nl~~~L~~~gI~Ps~g~~yt 150 (212)
T 1jy5_A 115 NQYEYFSTTLMLYFKYNISEILSESGYLPSNTAEYK 150 (212)
T ss_dssp SHHHHHHHHHHHHHHSCHHHHHHTTTCCCCSSCCEE
T ss_pred CHHHHHHHHHHHHHhcCHHHHHHHcCCcCCCCceEc
Confidence 5667888765 6899999999999998 55543
No 44
>3vg7_A Fatty acid-binding protein, liver; lfabp, S-SAD, copper kalpha, palmitic acid, lipid binding PR; HET: PLM; 1.44A {Homo sapiens} PDB: 3b2i_A* 3b2j_A* 3b2k_A* 3b2l_A* 3stk_A* 3stm_X* 3stn_A 3vg2_A* 3vg3_A* 3vg4_A* 3vg5_A* 3vg6_A* 3b2h_A* 2py1_A 2l67_A 2l68_A 2lkk_A* 2ju3_A 2ju7_A 2ju8_A* ...
Probab=45.65 E-value=14 Score=26.30 Aligned_cols=20 Identities=25% Similarity=0.488 Sum_probs=17.7
Q ss_pred HHHHHHHCChHHHHHHcCCC
Q 044269 70 FQHGLEACGVTKSLMKLGVK 89 (129)
Q Consensus 70 F~r~Lk~~GV~~aLkkaGak 89 (129)
|...|+++||..++|++|..
T Consensus 18 fdeymkalGv~~~~rk~~~~ 37 (132)
T 3vg7_A 18 FEAFMKAIGLPEELIQKGKD 37 (132)
T ss_dssp HHHHHHHTTCCHHHHHHHTT
T ss_pred HHHHHHHhCCCHHHHHHHHh
Confidence 67778999999999999984
No 45
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=45.29 E-value=12 Score=25.29 Aligned_cols=19 Identities=16% Similarity=0.487 Sum_probs=15.7
Q ss_pred cCCCCCCEEEEcCEEEEEE
Q 044269 86 LGVKEGDTVIVGDMEMVWH 104 (129)
Q Consensus 86 aGakeGDtV~IGd~EFey~ 104 (129)
.=+++||.|.||+.+|.+.
T Consensus 91 ~~L~~gd~i~lG~~~~~~~ 109 (118)
T 1uht_A 91 VNLGDGDVIKLGEYTSILV 109 (118)
T ss_dssp EECCTTEEEEETTTEEEEE
T ss_pred EEcCCCCEEEECCeEEEEE
Confidence 4588999999999887664
No 46
>2qo4_A Liver-basic fatty acid binding protein; liver bIle acid-binding protein, BABP, fatty acid-binding PR FABP, cholic acid cholate, bIle acid; HET: CHD; 1.50A {Danio rerio} PDB: 2qo6_A* 2qo5_A* 2ftb_A* 2ft9_A*
Probab=45.27 E-value=19 Score=25.17 Aligned_cols=27 Identities=15% Similarity=0.235 Sum_probs=21.2
Q ss_pred HHHHHHHCChHHHHHHcCCCCCCEEEE
Q 044269 70 FQHGLEACGVTKSLMKLGVKEGDTVIV 96 (129)
Q Consensus 70 F~r~Lk~~GV~~aLkkaGakeGDtV~I 96 (129)
|...|+++||..++++++...-=++.|
T Consensus 15 fdeylkalGv~~~~rk~a~~~kp~~ei 41 (126)
T 2qo4_A 15 YEEFLRAISLPEEVIKLAKDVKPVTEI 41 (126)
T ss_dssp HHHHHHHTTCCHHHHHHTTTCCCEEEE
T ss_pred HHHHHHHcCCCHHHHHhhccCCceEEE
Confidence 677899999999999999766434443
No 47
>1iyb_A Ribonuclease, ribonuclease M5; hydrolase; HET: 5GP; 1.50A {Nicotiana glutinosa} SCOP: d.124.1.1 PDB: 1dix_A
Probab=43.33 E-value=9.4 Score=28.59 Aligned_cols=32 Identities=19% Similarity=0.313 Sum_probs=24.9
Q ss_pred HHHHHHHHHH---HHCChHHHHHHcCCCC-CCEEEE
Q 044269 65 DSERRFQHGL---EACGVTKSLMKLGVKE-GDTVIV 96 (129)
Q Consensus 65 es~~rF~r~L---k~~GV~~aLkkaGake-GDtV~I 96 (129)
+...||+..| ++..+.+.|+++||.+ |-++.+
T Consensus 110 ~q~~YF~~a~~l~~~~~~~~~L~~~gI~P~~~~~t~ 145 (208)
T 1iyb_A 110 DQHGYFKKALDLKNQINLLEILQGAGIHPDGGFYSL 145 (208)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHHHHTTCCSSSCEEEH
T ss_pred CHHHHHHHHHHHHHHcChHHHHHHCCcccCCceEeH
Confidence 5677787665 5789999999999998 766543
No 48
>1mzk_A Kinase associated protein phosphatase; beta sandwich, hydrolase; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=43.13 E-value=8.7 Score=27.01 Aligned_cols=19 Identities=16% Similarity=0.371 Sum_probs=16.4
Q ss_pred cCCCCCCEEEEcCEEEEEE
Q 044269 86 LGVKEGDTVIVGDMEMVWH 104 (129)
Q Consensus 86 aGakeGDtV~IGd~EFey~ 104 (129)
.=+++||+|.||+..|.|.
T Consensus 99 ~~L~~GD~I~iG~~~~~~~ 117 (139)
T 1mzk_A 99 VELASDDIITLGTTTKVYV 117 (139)
T ss_dssp EECCTTEEEECSSSCEEEE
T ss_pred EECCCCCEEEECCEEEEEE
Confidence 3578999999999999984
No 49
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis}
Probab=42.35 E-value=19 Score=26.51 Aligned_cols=18 Identities=22% Similarity=0.527 Sum_probs=16.1
Q ss_pred cCCCCCCEEEEcCEEEEE
Q 044269 86 LGVKEGDTVIVGDMEMVW 103 (129)
Q Consensus 86 aGakeGDtV~IGd~EFey 103 (129)
.=+++||.|.||+.+|.|
T Consensus 139 ~~L~~GD~I~lG~~~l~f 156 (157)
T 3oun_A 139 WQLADGDVIRLGHSEIIV 156 (157)
T ss_dssp EECCTTCEEEETTEEEEE
T ss_pred EECCCCCEEEECCEEEEE
Confidence 568999999999999976
No 50
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4
Probab=42.17 E-value=12 Score=28.95 Aligned_cols=20 Identities=15% Similarity=0.162 Sum_probs=17.9
Q ss_pred CCC-CCCEEEEcCEEEEEEec
Q 044269 87 GVK-EGDTVIVGDMEMVWHDS 106 (129)
Q Consensus 87 Gak-eGDtV~IGd~EFey~ed 106 (129)
.++ .||.+.||++.|.+.++
T Consensus 149 ~L~~~GD~I~ig~~~~~~~~~ 169 (238)
T 1wv3_A 149 NKAYIGDHIYVEGIWLEVQAD 169 (238)
T ss_dssp EEEETTCEEEETTEEEEECSS
T ss_pred eccCCcCEEEECCEEEEEECC
Confidence 478 99999999999999776
No 51
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5
Probab=41.88 E-value=13 Score=23.40 Aligned_cols=19 Identities=16% Similarity=0.702 Sum_probs=13.6
Q ss_pred HHHcCCCCCCEEE-EcCEEE
Q 044269 83 LMKLGVKEGDTVI-VGDMEM 101 (129)
Q Consensus 83 LkkaGakeGDtV~-IGd~EF 101 (129)
..++|+++||.|. |++...
T Consensus 32 A~~aGl~~GD~I~~ing~~v 51 (87)
T 2i6v_A 32 FESIGLQDGDMAVALNGLDL 51 (87)
T ss_dssp HHHTTCCTTCEEEEETTEET
T ss_pred HHHCCCCCCCEEEEECCEEC
Confidence 4578999999874 555544
No 52
>1iqq_A S3-RNAse; japanese PEAR, SELF-incompatibilit family ribonuclease, hydrolase; HET: NAG BMA MAN; 1.50A {Pyrus pyrifolia} SCOP: d.124.1.1
Probab=41.63 E-value=30 Score=25.52 Aligned_cols=31 Identities=16% Similarity=0.266 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHH---H--CChHHHHHHcCCCC-CCEE
Q 044269 64 LDSERRFQHGLE---A--CGVTKSLMKLGVKE-GDTV 94 (129)
Q Consensus 64 ~es~~rF~r~Lk---~--~GV~~aLkkaGake-GDtV 94 (129)
.+...||+..|+ + ..+.+.|+++||.+ |.++
T Consensus 97 ~~~~~YF~~a~~l~~~~k~n~~~~L~~~~I~P~~~~~ 133 (200)
T 1iqq_A 97 DNENHYFETVIKMYISKKQNVSRILSKAKIEPDGKKR 133 (200)
T ss_dssp CSHHHHHHHHHHHHTTTCCCHHHHHHHTTCCSSCCEE
T ss_pred CCHHHHHHHHHHHHhhcccCHHHHHHHcCCccCCCee
Confidence 467889988877 2 89999999999998 5444
No 53
>2h3j_A Hypothetical protein PA4359; NESG, GFT structural genomics, PAT89, PSI-2, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: b.34.1.2
Probab=41.49 E-value=20 Score=21.98 Aligned_cols=18 Identities=22% Similarity=0.445 Sum_probs=14.4
Q ss_pred hHHHHHHcCCCCCCEEEE
Q 044269 79 VTKSLMKLGVKEGDTVIV 96 (129)
Q Consensus 79 V~~aLkkaGakeGDtV~I 96 (129)
+-+.|.++|+.+|.+|.+
T Consensus 23 ~~~rL~~lGl~~G~~v~v 40 (75)
T 2h3j_A 23 YRQRLFSMGLLPGAALRV 40 (75)
T ss_dssp HHHHHHHHTCCTTCEEEE
T ss_pred HHHHHHHcCCCCCCEEEE
Confidence 345577889999999987
No 54
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2
Probab=40.71 E-value=14 Score=25.82 Aligned_cols=19 Identities=21% Similarity=0.478 Sum_probs=15.0
Q ss_pred cCCCCCCEEEEcC-------EEEEEE
Q 044269 86 LGVKEGDTVIVGD-------MEMVWH 104 (129)
Q Consensus 86 aGakeGDtV~IGd-------~EFey~ 104 (129)
.=+++||+|.||+ +.|+|.
T Consensus 90 ~~L~~GD~I~lG~~~~~~~~~~f~~~ 115 (138)
T 2pie_A 90 YSIHQGDYIQLGVPLENKENAEYEYE 115 (138)
T ss_dssp EECCTTCEEEESCCCTTCSSCSEEEE
T ss_pred EECCCCCEEEECCCCCCCceEEEEEE
Confidence 3478999999998 567764
No 55
>4ayb_H DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_H 2y0s_H 2waq_H 4b1o_H 4b1p_Z 2pmz_H 3hkz_H
Probab=39.46 E-value=14 Score=24.82 Aligned_cols=12 Identities=25% Similarity=0.445 Sum_probs=10.5
Q ss_pred cCCCCCCEEEEc
Q 044269 86 LGVKEGDTVIVG 97 (129)
Q Consensus 86 aGakeGDtV~IG 97 (129)
.|+++||.|+|-
T Consensus 55 ~g~k~GdVvkI~ 66 (84)
T 4ayb_H 55 INAKPGDIIRII 66 (84)
T ss_dssp HTCCTTCEEEEE
T ss_pred hCCCCCCEEEEE
Confidence 399999999984
No 56
>1a62_A RHO; transcription termination, termination, RNA binding domain, transcription regulation, OB fold, F1-ATPase; 1.55A {Escherichia coli BL21} SCOP: a.140.3.1 b.40.4.5 PDB: 1a63_A 2a8v_A 1a8v_A
Probab=38.95 E-value=33 Score=24.33 Aligned_cols=31 Identities=19% Similarity=0.389 Sum_probs=18.7
Q ss_pred cCCCCCCEEEEc-------C--EEEEEEecCCCCCCCccc
Q 044269 86 LGVKEGDTVIVG-------D--MEMVWHDSANNPGPSKAK 116 (129)
Q Consensus 86 aGakeGDtV~IG-------d--~EFey~ed~~~~~~~~~~ 116 (129)
.|++.||+|..- + +-+.+.+.-|-..|.+|+
T Consensus 89 f~lr~GD~V~g~vr~~~~~ek~~~l~~v~~vng~~pe~~~ 128 (130)
T 1a62_A 89 FNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENAR 128 (130)
T ss_dssp TTCCTTCEEEEEEECCCTTCCSEEEEEEEEETTBCCC---
T ss_pred hCCCCCCEEEEEEeCCCCCCcccceeEEEeECCCCHHHhh
Confidence 399999999742 1 245556666666666654
No 57
>3r8n_Q 30S ribosomal protein S17; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_Q 3fih_Q* 3iy8_Q 3j18_Q* 2wwl_Q 3oar_Q 3oaq_Q 3ofb_Q 3ofa_Q 3ofp_Q 3ofx_Q 3ofy_Q 3ofo_Q 3r8o_Q 4a2i_Q 4gd1_Q 4gd2_Q 3i1m_Q 1vs7_Q* 3e1a_J ...
Probab=38.84 E-value=12 Score=24.91 Aligned_cols=14 Identities=21% Similarity=0.200 Sum_probs=11.6
Q ss_pred cCCCCCCEEEEcCE
Q 044269 86 LGVKEGDTVIVGDM 99 (129)
Q Consensus 86 aGakeGDtV~IGd~ 99 (129)
.-++.||+|.|+..
T Consensus 48 n~~~~GD~V~I~e~ 61 (80)
T 3r8n_Q 48 NECGIGDVVEIREC 61 (80)
T ss_dssp GCCCTTCEEEEEEE
T ss_pred CCCCCCCEEEEEEe
Confidence 36899999999854
No 58
>2f73_A L-FABP, fatty acid-binding protein, liver; structural genomics, structural genomics consortium, SGC, lipid binding protein; 2.50A {Homo sapiens} SCOP: b.60.1.2
Probab=37.53 E-value=21 Score=25.96 Aligned_cols=27 Identities=19% Similarity=0.309 Sum_probs=20.7
Q ss_pred HHHHHHHCChHHHHHHcCCCCCCEEEE
Q 044269 70 FQHGLEACGVTKSLMKLGVKEGDTVIV 96 (129)
Q Consensus 70 F~r~Lk~~GV~~aLkkaGakeGDtV~I 96 (129)
|...|+++||..++++++...-=++.|
T Consensus 37 fdeylkalGV~~~~Rk~a~~~kp~~eI 63 (149)
T 2f73_A 37 FEAFMKAIGLPEELIQKGKDIKGVSEI 63 (149)
T ss_dssp HHHHHHHTTCCHHHHHHHTTCCCEEEE
T ss_pred HHHHHHHcCCCHHHHhhhccCCceEEE
Confidence 677799999999999999654434433
No 59
>3tiw_A Transitional endoplasmic reticulum ATPase; beta-barrel alpha-helix, transport protein ATPase ubiquitin ubiquitin, phosphorylation; 1.80A {Homo sapiens} PDB: 3qq8_A 3qq7_A 3qc8_A
Probab=37.29 E-value=19 Score=27.10 Aligned_cols=18 Identities=28% Similarity=0.431 Sum_probs=14.8
Q ss_pred HHHHHcCCCCCCEEEEcC
Q 044269 81 KSLMKLGVKEGDTVIVGD 98 (129)
Q Consensus 81 ~aLkkaGakeGDtV~IGd 98 (129)
+.|++.|+.+||+|.|-+
T Consensus 44 ~~m~~Lgl~~GD~V~I~G 61 (187)
T 3tiw_A 44 PKMDELQLFRGDTVLLKG 61 (187)
T ss_dssp HHHHHHTCCTTCEEEEEC
T ss_pred HHHHHcCCCCCCEEEEEC
Confidence 466777999999999964
No 60
>3u5c_L RP41, S18, YS12, 40S ribosomal protein S11-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_P 3o30_F 3o2z_F 3u5g_L 3jyv_Q* 1s1h_Q
Probab=37.18 E-value=43 Score=25.03 Aligned_cols=32 Identities=34% Similarity=0.451 Sum_probs=19.9
Q ss_pred CCCCCCEEEEcCE-------EEEEEecCCCCCCCccccccc
Q 044269 87 GVKEGDTVIVGDM-------EMVWHDSANNPGPSKAKKGFE 120 (129)
Q Consensus 87 GakeGDtV~IGd~-------EFey~ed~~~~~~~~~~~~~~ 120 (129)
-++.||+|.|+.. .|.-.+-...++ .++|.|.
T Consensus 116 ~~kvGD~V~I~EcRPLSKtKrw~Vv~Iv~ka~--~~~k~f~ 154 (156)
T 3u5c_L 116 RVQVGDIVTVGQCRPISKTVRFNVVKVSAAAG--KANKQFA 154 (156)
T ss_dssp CCCTTCEEEEEEEEEEETTEEEEEEEECCCCS--SSGGGCC
T ss_pred cCCCCCEEEEEecccCCCcEeEEEEEEEecCC--Ccccccc
Confidence 4899999999943 354444333332 4567775
No 61
>2xzm_Q Ribosomal protein S17 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_Q
Probab=37.08 E-value=35 Score=25.53 Aligned_cols=34 Identities=26% Similarity=0.333 Sum_probs=20.2
Q ss_pred CCCCCCEEEEc-------CEEEEEEecCCCCCCCccccccc
Q 044269 87 GVKEGDTVIVG-------DMEMVWHDSANNPGPSKAKKGFE 120 (129)
Q Consensus 87 GakeGDtV~IG-------d~EFey~ed~~~~~~~~~~~~~~ 120 (129)
-++.||+|.|+ ...|.-.+-...+....++|.|.
T Consensus 115 ~~kvGD~V~I~EcRPLSKtKrw~Vv~I~~ka~~g~~~k~f~ 155 (157)
T 2xzm_Q 115 SVKEGDILVAGQCRPISKTVRFNALQVVPNEIIGSVRKQFL 155 (157)
T ss_dssp CCCTTCEEEEEECCCCSSSCCEEEEEECCCCCCSCTTTCCC
T ss_pred CCCCCCEEEEEEcCCCCCcEEEEEEEEEeccccCccchhhh
Confidence 58999999998 33455444322222234567774
No 62
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=37.08 E-value=13 Score=25.94 Aligned_cols=20 Identities=20% Similarity=0.351 Sum_probs=16.5
Q ss_pred cCCCCCCEEEEcCEEEEEEe
Q 044269 86 LGVKEGDTVIVGDMEMVWHD 105 (129)
Q Consensus 86 aGakeGDtV~IGd~EFey~e 105 (129)
.=+++||+|.||+..|.++.
T Consensus 94 ~~L~~GD~I~iG~~~~~~~~ 113 (131)
T 3hx1_A 94 HIIQTGDEIVMGPQVSVRYE 113 (131)
T ss_dssp EECCTTCEEECSTTCEEEEE
T ss_pred EECCCCCEEEECCEEEEEEE
Confidence 56899999999998876643
No 63
>2lba_A BABP protein; ileal bIle acid binding protein, lipid binding protein; HET: CHO; NMR {Gallus gallus}
Probab=37.04 E-value=23 Score=25.23 Aligned_cols=27 Identities=11% Similarity=0.174 Sum_probs=21.0
Q ss_pred HHHHHHHCChHHHHHHcCCCCCCEEEE
Q 044269 70 FQHGLEACGVTKSLMKLGVKEGDTVIV 96 (129)
Q Consensus 70 F~r~Lk~~GV~~aLkkaGakeGDtV~I 96 (129)
|...|+++||..++++++...-=++.|
T Consensus 19 fdeylkalGv~~~~rk~a~~~kp~~ei 45 (136)
T 2lba_A 19 YDDFVKKIGLPADKIEMGRNCKIVTEV 45 (136)
T ss_dssp HHHHHHHHTCCHHHHTTTSSCCCEEEE
T ss_pred HHHHHHHhCCCHHHHHhhccCCcEEEE
Confidence 677789999999999999766434443
No 64
>2rcq_A CRBP-II, retinol-binding protein II, cellular; cellular retinol binding protein II, lipid-binding protein, X-RAY, cytoplasm, transport, vitamin A; HET: TLA; 1.20A {Homo sapiens} PDB: 2rct_A* 1b4m_A 1eii_A* 1opa_A 1opb_A* 1kqw_A* 1kqx_A
Probab=37.01 E-value=22 Score=25.45 Aligned_cols=27 Identities=19% Similarity=0.283 Sum_probs=20.8
Q ss_pred HHHHHHHCChHHHHHHcCCCCCCEEEE
Q 044269 70 FQHGLEACGVTKSLMKLGVKEGDTVIV 96 (129)
Q Consensus 70 F~r~Lk~~GV~~aLkkaGakeGDtV~I 96 (129)
|...|+++||..++++++...-=++.|
T Consensus 20 fdeylkalGv~~~~rk~a~~~kp~~ei 46 (141)
T 2rcq_A 20 FEGYMKALDIDFATRKIAVRLTQTKVI 46 (141)
T ss_dssp HHHHHHHTTCCHHHHHHHTTCCCEEEE
T ss_pred HHHHHHHhCCCHHHHHHhhcCCcEEEE
Confidence 677789999999999999764434444
No 65
>1p6p_A Fatty acid-binding protein, liver; beta barrel, lipid binding protein; 2.50A {Bufo arenarum} SCOP: b.60.1.2
Probab=35.97 E-value=19 Score=25.19 Aligned_cols=27 Identities=11% Similarity=0.358 Sum_probs=20.6
Q ss_pred HHHHHHHCChHHHHHHcCCCCCCEEEE
Q 044269 70 FQHGLEACGVTKSLMKLGVKEGDTVIV 96 (129)
Q Consensus 70 F~r~Lk~~GV~~aLkkaGakeGDtV~I 96 (129)
|...|+++||..++++++...-=++.|
T Consensus 14 fdeymkalGv~~~~rk~a~~~kp~~ei 40 (125)
T 1p6p_A 14 YENFLRTVGLPEDIIKVAKDVNPVIEI 40 (125)
T ss_dssp HHHHHHHHTCCHHHHHHHTTCCCEEEE
T ss_pred HHHHHHHhCCCHHHHHhhccCCcEEEE
Confidence 677789999999999999665333333
No 66
>2k5l_A FEOA; structure, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium thermocellum atcc 27405}
Probab=35.78 E-value=26 Score=22.26 Aligned_cols=16 Identities=19% Similarity=0.665 Sum_probs=13.0
Q ss_pred HHHHHcCCCCCCEEEE
Q 044269 81 KSLMKLGVKEGDTVIV 96 (129)
Q Consensus 81 ~aLkkaGakeGDtV~I 96 (129)
+.|.++|+.+|.+|.+
T Consensus 26 ~rL~~lGl~pG~~v~V 41 (81)
T 2k5l_A 26 RRIMDMGITRGCEIYI 41 (81)
T ss_dssp HHHHHHTCCTTCEEEE
T ss_pred HHHHHCCCCCCCEEEE
Confidence 4467779999999987
No 67
>1vyf_A SM14, 14 kDa fatty acid binding protein; transport protein; HET: OLA; 1.85A {Schistosoma mansoni} SCOP: b.60.1.2 PDB: 1vyg_A* 2poa_A
Probab=35.65 E-value=24 Score=24.92 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=21.1
Q ss_pred HHHHHHHCChHHHHHHcCCCCCCEEEE
Q 044269 70 FQHGLEACGVTKSLMKLGVKEGDTVIV 96 (129)
Q Consensus 70 F~r~Lk~~GV~~aLkkaGakeGDtV~I 96 (129)
|...|+++||..++++++...-=++.|
T Consensus 18 fdeylkalGv~~~~rk~a~~~kp~~ei 44 (135)
T 1vyf_A 18 FDAVMSKLGVSWATRQIGNTVTPTVTF 44 (135)
T ss_dssp HHHHHHHTTCCHHHHHHHTTCCCEEEE
T ss_pred HHHHHHHcCCCHHHHHhhccCCceEEE
Confidence 677899999999999999775444444
No 68
>3e19_A FEOA; transcriptional regulator, metal-binding, iron uptake, beta- transcription regulator, metal binding protein; HET: GOL; 2.00A {Thermococcus thioreducens}
Probab=35.62 E-value=26 Score=21.82 Aligned_cols=17 Identities=29% Similarity=0.532 Sum_probs=12.9
Q ss_pred HHHHHcCCCCCCEEEEc
Q 044269 81 KSLMKLGVKEGDTVIVG 97 (129)
Q Consensus 81 ~aLkkaGakeGDtV~IG 97 (129)
+.|.++|+.+|..|.+-
T Consensus 29 ~rL~~lGi~~G~~v~v~ 45 (77)
T 3e19_A 29 QKLVSMGLTPGATIQVL 45 (77)
T ss_dssp HHHHTTTCSTTCEEEEE
T ss_pred HHHHHCCCCCCCEEEEE
Confidence 34566788999999874
No 69
>2qne_A Putative methyltransferase; ZP_00558420.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 2.30A {Desulfitobacterium hafniense}
Probab=35.52 E-value=15 Score=31.86 Aligned_cols=40 Identities=25% Similarity=0.283 Sum_probs=28.2
Q ss_pred hcCCCCHHHHHHH----HHHHHHCChH-------HHHHHcCCC-CCCEEEEc
Q 044269 58 MTNWRYLDSERRF----QHGLEACGVT-------KSLMKLGVK-EGDTVIVG 97 (129)
Q Consensus 58 ~tnfd~~es~~rF----~r~Lk~~GV~-------~aLkkaGak-eGDtV~IG 97 (129)
.+++=+++.+.+. .++|+..||. +.++++|++ +|++|+|.
T Consensus 23 ~~~~ls~e~le~IH~~al~ILeeiGv~f~~~ealeifk~aGa~Vdg~~V~ip 74 (495)
T 2qne_A 23 KYNILTEDQVQKIHENTMKILEEIGIEFEYEPALEVFRREGQKVEGKRVYLT 74 (495)
T ss_dssp CCCCSCHHHHHHHHHHHHHHHHHTCEEECCHHHHHHHHHTTCEEETTEEECC
T ss_pred CcccCCHHHHHHHHHHHHHHHHHCCcccCCHHHHHHHHHcCCcccCCEEEeC
Confidence 3444455555544 4688899998 667899983 68999875
No 70
>1mvg_A Liver basic fatty acid binding protein; beta-barrel, calycin, ten antiparallel beta strands, helix- turn-helix motif, transport protein; NMR {Gallus gallus} SCOP: b.60.1.2 PDB: 1tvq_A 1tw4_A* 1zry_A 2jn3_A* 2k62_A*
Probab=35.45 E-value=18 Score=25.26 Aligned_cols=26 Identities=19% Similarity=0.249 Sum_probs=20.0
Q ss_pred HHHHHHHCChHHHHHHcCCCCCCEEE
Q 044269 70 FQHGLEACGVTKSLMKLGVKEGDTVI 95 (129)
Q Consensus 70 F~r~Lk~~GV~~aLkkaGakeGDtV~ 95 (129)
|...|+++||..++++++...-=++.
T Consensus 14 fdeylkalGv~~~~rk~a~~~kp~~e 39 (125)
T 1mvg_A 14 YEEFLKALALPEDLIKMARDIKPIVE 39 (125)
T ss_dssp HHHHHHHSSSCHHHHHHHHTCCCEEE
T ss_pred HHHHHHHcCCCHHHHHhhccCCcEEE
Confidence 67789999999999999965433333
No 71
>1ifc_A Intestinal fatty acid binding protein; lipid-binding protein; 1.19A {Rattus norvegicus} SCOP: b.60.1.2 PDB: 1ael_A 1icm_A* 1ifb_A 1ure_A* 2ifb_A* 3akn_A* 1icn_A* 1t8v_A 1dc9_A 1a57_A 1kzx_A 1kzw_A 3akm_A* 3ifb_A 1sa8_A
Probab=35.31 E-value=19 Score=25.35 Aligned_cols=27 Identities=19% Similarity=0.359 Sum_probs=21.4
Q ss_pred HHHHHHHCChHHHHHHcCCCCCCEEEE
Q 044269 70 FQHGLEACGVTKSLMKLGVKEGDTVIV 96 (129)
Q Consensus 70 F~r~Lk~~GV~~aLkkaGakeGDtV~I 96 (129)
|...|+++||..++++++...-=++.|
T Consensus 15 fdeylkalGv~~~~rk~a~~~kp~~ei 41 (132)
T 1ifc_A 15 YEKFMEKMGINVVKRKLGAHDNLKLTI 41 (132)
T ss_dssp HHHHHHHHTCCHHHHHHHTTCCCEEEE
T ss_pred HHHHHHHcCCCHHHHHHhccCCCeEEE
Confidence 677789999999999999766444444
No 72
>1ftp_A Muscle fatty acid binding protein; binding protein(fatty acid); 2.20A {Schistocerca gregaria} SCOP: b.60.1.2 PDB: 2flj_A*
Probab=35.01 E-value=25 Score=24.76 Aligned_cols=20 Identities=30% Similarity=0.378 Sum_probs=17.3
Q ss_pred HHHHHHHCChHHHHHHcCCC
Q 044269 70 FQHGLEACGVTKSLMKLGVK 89 (129)
Q Consensus 70 F~r~Lk~~GV~~aLkkaGak 89 (129)
|...|+++||..++++++..
T Consensus 17 fdeylkalGv~~~~rk~a~~ 36 (133)
T 1ftp_A 17 FEEYMKAIGVGAIERKAGLA 36 (133)
T ss_dssp HHHHHHHTTCCHHHHHHHTT
T ss_pred HHHHHHHhCCCHHHHHHhhc
Confidence 67778999999999999943
No 73
>1mvf_D MAZE protein, PEMI-like protein 1; plasmid addiction, camel antibody, addiction antidote, immun; 1.65A {Escherichia coli} SCOP: b.129.1.1 PDB: 1ub4_C
Probab=34.55 E-value=25 Score=22.40 Aligned_cols=15 Identities=20% Similarity=0.284 Sum_probs=12.4
Q ss_pred HHHHcCCCCCCEEEE
Q 044269 82 SLMKLGVKEGDTVIV 96 (129)
Q Consensus 82 aLkkaGakeGDtV~I 96 (129)
-+++.|+++||.|.|
T Consensus 21 ~~~~lgl~~gd~v~i 35 (82)
T 1mvf_D 21 LMQALNLNIDDEVKI 35 (82)
T ss_dssp HHHHTTCCTTCBEEE
T ss_pred HHHHcCCCCCCEEEE
Confidence 456789999999876
No 74
>3mhx_A Putative ferrous iron transport protein A; FEOA, zinc binding, prokaryotic SH3 stenotrophomonus maltophilia, metal transport; 1.70A {Stenotrophomonas maltophilia}
Probab=34.33 E-value=33 Score=21.93 Aligned_cols=17 Identities=29% Similarity=0.561 Sum_probs=13.2
Q ss_pred HHHHHHcCCCCCCEEEE
Q 044269 80 TKSLMKLGVKEGDTVIV 96 (129)
Q Consensus 80 ~~aLkkaGakeGDtV~I 96 (129)
-+.|.++|+.+|..|.+
T Consensus 28 ~~rL~~lGl~pG~~v~V 44 (85)
T 3mhx_A 28 ARRLRELGFVKGEEVRM 44 (85)
T ss_dssp HHHHHHTTCCTTCEEEE
T ss_pred HHHHHHCCCCCCCEEEE
Confidence 34566778999999987
No 75
>4a60_A Fatty acid-binding protein 9 testis lipid-binding protein, TLBP, testis-type fatty...; transport protein; 1.53A {Homo sapiens} PDB: 3nr3_A*
Probab=34.21 E-value=20 Score=26.36 Aligned_cols=27 Identities=15% Similarity=0.315 Sum_probs=21.4
Q ss_pred HHHHHHHCChHHHHHHcCC---------CCCCEEEE
Q 044269 70 FQHGLEACGVTKSLMKLGV---------KEGDTVIV 96 (129)
Q Consensus 70 F~r~Lk~~GV~~aLkkaGa---------keGDtV~I 96 (129)
|...|+++||..++|++|. ++||.+.|
T Consensus 39 fdeymkalGV~~~~Rk~a~~~kp~~eI~q~Gd~~ti 74 (154)
T 4a60_A 39 FEDYMKELGVNFAARNMAGLVKPTVTISVDGKMMTI 74 (154)
T ss_dssp HHHHHHHHTCCHHHHHHHTTSCCEEEEEEETTEEEE
T ss_pred HHHHHHHhCCCHHHHHHHhcCCceEEEEEcCCEEEE
Confidence 6677899999999999998 34666555
No 76
>2hj0_A Putative citrate lyase, ALFA subunit; alpha beta protein., structural genomics, PSI-2, protein STR initiative; HET: CIT; 2.70A {Streptococcus mutans}
Probab=34.12 E-value=23 Score=30.61 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=19.5
Q ss_pred ChHHHHHHcCCCCCCEEEEcCE
Q 044269 78 GVTKSLMKLGVKEGDTVIVGDM 99 (129)
Q Consensus 78 GV~~aLkkaGakeGDtV~IGd~ 99 (129)
-..+|+...||++||||.++++
T Consensus 51 saeEAv~~~~IkdG~tV~~gGf 72 (519)
T 2hj0_A 51 SIHEAIEKTRLKDGMTISFHHH 72 (519)
T ss_dssp CHHHHHHHTTCCTTCEEEECCT
T ss_pred CHHHHHhcCCCCCCCEEEECCc
Confidence 5678888899999999999986
No 77
>3qwz_A Transitional endoplasmic reticulum ATPase; UBX, P97 binding, transport protein; HET: MLY; 2.00A {Homo sapiens} PDB: 2pjh_B
Probab=33.86 E-value=21 Score=27.42 Aligned_cols=18 Identities=28% Similarity=0.431 Sum_probs=14.8
Q ss_pred HHHHHcCCCCCCEEEEcC
Q 044269 81 KSLMKLGVKEGDTVIVGD 98 (129)
Q Consensus 81 ~aLkkaGakeGDtV~IGd 98 (129)
+.+++.|+.+||+|.|-+
T Consensus 47 ~~m~~Lgl~~GD~V~I~G 64 (211)
T 3qwz_A 47 PKMDELQLFRGDTVLLKG 64 (211)
T ss_dssp HHHHHHTCCBTCEEEEEC
T ss_pred HHHHHcCCCCCCEEEEeC
Confidence 466777999999999954
No 78
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae}
Probab=33.81 E-value=19 Score=26.14 Aligned_cols=18 Identities=22% Similarity=0.647 Sum_probs=15.3
Q ss_pred CCCCCCEEEEc------CEEEEEE
Q 044269 87 GVKEGDTVIVG------DMEMVWH 104 (129)
Q Consensus 87 GakeGDtV~IG------d~EFey~ 104 (129)
=+++||+|.|| .+||.|.
T Consensus 133 ~L~~GD~I~~G~s~~~~~~elvF~ 156 (158)
T 3els_A 133 ELRSGDVLTLSEFEEDNDYELIFM 156 (158)
T ss_dssp ECCTTEEEESSSCGGGCCEEEEEE
T ss_pred EcCCCCEEEECCCCCCCCEEEEEE
Confidence 48999999999 7887774
No 79
>2k4y_A FEOA-like protein; GFT structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Clostridium acetobutylicum}
Probab=33.78 E-value=30 Score=22.24 Aligned_cols=18 Identities=22% Similarity=0.682 Sum_probs=14.0
Q ss_pred hHHHHHHcCCCCCCEEEE
Q 044269 79 VTKSLMKLGVKEGDTVIV 96 (129)
Q Consensus 79 V~~aLkkaGakeGDtV~I 96 (129)
+-+.|.++|+.+|.+|.+
T Consensus 27 ~~~rL~~mGl~pG~~V~V 44 (86)
T 2k4y_A 27 VRRKIMDMGIVRGTEIYI 44 (86)
T ss_dssp HHHHHHHHTCCTTCEEEE
T ss_pred HHHHHHHCCCCCCCEEEE
Confidence 334577789999999987
No 80
>1cz4_A VCP-like ATPase; double-PSI beta-barrel, beta-CLAM, substrate recognition DOM hydrolase; NMR {Thermoplasma acidophilum} SCOP: b.52.2.3 d.31.1.1 PDB: 1cz5_A
Probab=33.66 E-value=24 Score=26.25 Aligned_cols=18 Identities=28% Similarity=0.257 Sum_probs=15.2
Q ss_pred HHHHHcCCCCCCEEEEcC
Q 044269 81 KSLMKLGVKEGDTVIVGD 98 (129)
Q Consensus 81 ~aLkkaGakeGDtV~IGd 98 (129)
++|.+.|+..||+|.|-+
T Consensus 29 ~~m~~Lgl~~GD~V~I~G 46 (185)
T 1cz4_A 29 SSRRLLDAEIGDVVEIEK 46 (185)
T ss_dssp HHHHTTCCCTTCEEEEES
T ss_pred HHHHHcCCCCCCEEEEEc
Confidence 567788999999999954
No 81
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2
Probab=33.16 E-value=31 Score=24.40 Aligned_cols=21 Identities=10% Similarity=0.142 Sum_probs=17.0
Q ss_pred cCCCCCCEEEEcC---EEEEEEec
Q 044269 86 LGVKEGDTVIVGD---MEMVWHDS 106 (129)
Q Consensus 86 aGakeGDtV~IGd---~EFey~ed 106 (129)
+=+++||+|.||. ..|.|.+.
T Consensus 118 ~~L~~GD~I~lG~~~~~~f~f~d~ 141 (149)
T 1gxc_A 118 RPLNNNSEIALSLSRNKVFVFFDL 141 (149)
T ss_dssp EECCTTEEEEESSTTCEEEEEEET
T ss_pred EECCCCCEEEECCCCCeEEEEEEC
Confidence 4589999999998 67887663
No 82
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=32.99 E-value=33 Score=23.18 Aligned_cols=38 Identities=5% Similarity=-0.099 Sum_probs=27.1
Q ss_pred cchHHHHHHhcCCCCHHHHHHHHHHHHHCChHHHHHHcCCCC
Q 044269 49 GAGLQRFVQMTNWRYLDSERRFQHGLEACGVTKSLMKLGVKE 90 (129)
Q Consensus 49 G~~IEr~v~~tnfd~~es~~rF~r~Lk~~GV~~aLkkaGake 90 (129)
|+.+|+.+.+....+.+.++.. -......+|++.|...
T Consensus 13 g~~~e~~L~~~GI~t~~~Lr~~----Ga~~ay~rLk~~~~~~ 50 (93)
T 3mab_A 13 GKVLEQDLIKAGIKTPVELKDV----GSKEAFLRIWENDSSV 50 (93)
T ss_dssp CHHHHHHHHHTTCCSHHHHHHH----CHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHcCCCCHHHHHhC----CHHHHHHHHHHhCCCC
Confidence 8899999999999999988543 2333445566666443
No 83
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=32.62 E-value=22 Score=25.57 Aligned_cols=17 Identities=29% Similarity=0.589 Sum_probs=14.5
Q ss_pred HHHHHHcCCCCCCEEEE
Q 044269 80 TKSLMKLGVKEGDTVIV 96 (129)
Q Consensus 80 ~~aLkkaGakeGDtV~I 96 (129)
..-|++.||.+||||..
T Consensus 103 srtL~EQGI~e~~tllL 119 (128)
T 2kc2_A 103 GRTLREQGVEEHETLLL 119 (128)
T ss_dssp SSCHHHHTCCTTSEEEE
T ss_pred CCcHHHcCCCCCCEEEE
Confidence 45689999999999874
No 84
>1qd7_I S17 ribosomal protein; 30S ribosomal subunit, low resolution model, ribosome; 5.50A {Thermus thermophilus} SCOP: i.1.1.3 PDB: 1eg0_G 1rip_A
Probab=32.25 E-value=18 Score=24.63 Aligned_cols=12 Identities=33% Similarity=0.415 Sum_probs=10.4
Q ss_pred CCCCCCEEEEcC
Q 044269 87 GVKEGDTVIVGD 98 (129)
Q Consensus 87 GakeGDtV~IGd 98 (129)
-++.||+|.|..
T Consensus 49 ~~k~GD~V~I~E 60 (89)
T 1qd7_I 49 EAKVGDIVKIME 60 (89)
T ss_pred CCCCCCEEEEEE
Confidence 489999999984
No 85
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Probab=31.89 E-value=24 Score=22.81 Aligned_cols=19 Identities=16% Similarity=0.247 Sum_probs=14.0
Q ss_pred HHcCCCCCCEEE-EcCEEEE
Q 044269 84 MKLGVKEGDTVI-VGDMEMV 102 (129)
Q Consensus 84 kkaGakeGDtV~-IGd~EFe 102 (129)
.++|++.||.|. |++....
T Consensus 16 ~~aGl~~GD~I~~ing~~v~ 35 (95)
T 3id1_A 16 AEAQIAPGTELKAVDGIETP 35 (95)
T ss_dssp HHTTCCTTCEEEEETTEECS
T ss_pred HHcCCCCCCEEEEECCEECC
Confidence 578999999864 6666543
No 86
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5
Probab=31.88 E-value=20 Score=23.40 Aligned_cols=18 Identities=17% Similarity=0.704 Sum_probs=12.6
Q ss_pred HHcCCCCCCEEE-EcCEEE
Q 044269 84 MKLGVKEGDTVI-VGDMEM 101 (129)
Q Consensus 84 kkaGakeGDtV~-IGd~EF 101 (129)
.++|+++||.|. |++...
T Consensus 51 ~~aGl~~GDvI~~ing~~v 69 (105)
T 2i4s_A 51 ESIGLQDGDMAVALNGLDL 69 (105)
T ss_dssp HHHTCCTTCEEEEETTEET
T ss_pred HHcCCCCCCEEEEECCEEC
Confidence 456999999875 555443
No 87
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=31.65 E-value=13 Score=30.23 Aligned_cols=44 Identities=16% Similarity=0.194 Sum_probs=35.1
Q ss_pred chHHHHHHhcCCCCHHHHHHHHHHHHHCChHHHHHHcCCCCCCE
Q 044269 50 AGLQRFVQMTNWRYLDSERRFQHGLEACGVTKSLMKLGVKEGDT 93 (129)
Q Consensus 50 ~~IEr~v~~tnfd~~es~~rF~r~Lk~~GV~~aLkkaGakeGDt 93 (129)
+++.++.+.++.+..+.+.++.+.++++|+-..|++.|+.+.|.
T Consensus 278 ~~~~~~a~~lg~~~~~~~~~i~~l~~~lglP~~L~e~Gi~~~~i 321 (358)
T 3jzd_A 278 EAMARIRRATGAGEQSAAATLFDLAQRHGAPVALRDIGMREEDL 321 (358)
T ss_dssp HHHHHHHHHHTCTTSCHHHHHHHHHHHTTCCCCGGGGTCCGGGH
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHcCCCCCHHHcCCCHHHH
Confidence 35666776666665567888999999999999999999988764
No 88
>2f9h_A PTS system, IIA component; alpha-beta structure, beta-barrel, dimer, structural genomic protein structure initiative; 1.57A {Enterococcus faecalis} SCOP: b.161.1.1
Probab=31.63 E-value=33 Score=24.67 Aligned_cols=19 Identities=26% Similarity=0.538 Sum_probs=16.0
Q ss_pred HcCCCCCCEEEEcCEEEEE
Q 044269 85 KLGVKEGDTVIVGDMEMVW 103 (129)
Q Consensus 85 kaGakeGDtV~IGd~EFey 103 (129)
+.-++.||++.||+.+|.-
T Consensus 52 ~~~i~~Gd~l~i~~~~Y~I 70 (129)
T 2f9h_A 52 QVTLAEGDHLKIGDTNYTI 70 (129)
T ss_dssp GCCCCTTCEEEETTEEEEE
T ss_pred cCCcCCCCEEEECCEEEEE
Confidence 3579999999999988763
No 89
>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}
Probab=31.58 E-value=25 Score=21.86 Aligned_cols=18 Identities=11% Similarity=0.237 Sum_probs=13.4
Q ss_pred HHcCCCCCCEEE-EcCEEE
Q 044269 84 MKLGVKEGDTVI-VGDMEM 101 (129)
Q Consensus 84 kkaGakeGDtV~-IGd~EF 101 (129)
.++|++.||.|. |++..+
T Consensus 42 ~~aGl~~GD~I~~ing~~v 60 (90)
T 2eaq_A 42 EFSQLQVDDEIIAINNTKF 60 (90)
T ss_dssp HHTTCCTTCEEEEETTEEC
T ss_pred HHcCCCCCCEEEEECCEEc
Confidence 467999999874 666654
No 90
>2a0a_A DER F 13; beta barrel, helix, allergen; NMR {Dermatophagoides farinae} SCOP: b.60.1.2
Probab=31.46 E-value=25 Score=24.75 Aligned_cols=27 Identities=22% Similarity=0.113 Sum_probs=20.6
Q ss_pred HHHHHHHCChHHHHHHcCCCCCCEEEE
Q 044269 70 FQHGLEACGVTKSLMKLGVKEGDTVIV 96 (129)
Q Consensus 70 F~r~Lk~~GV~~aLkkaGakeGDtV~I 96 (129)
|...|+++||..++++++...-=++.|
T Consensus 16 fdeylkalGv~~~~rk~a~~~kp~~ei 42 (131)
T 2a0a_A 16 FDEFLDKLGVGFMVKTAAKTLKPTFEV 42 (131)
T ss_dssp HHHHHHHHTCCHHHHTGGGTTCCEEEE
T ss_pred HHHHHHHcCCCHHHHHHhhcCCceEEE
Confidence 667789999999999999654434444
No 91
>3kbb_A Phosphorylated carbohydrates phosphatase TM_1254; hydrolase, arbohydrate metabolism, COBA magnesium, manganese, metal-binding, nickel; HET: MSE GOL; 1.74A {Thermotoga maritima MSB8}
Probab=30.73 E-value=22 Score=24.66 Aligned_cols=21 Identities=24% Similarity=0.254 Sum_probs=17.1
Q ss_pred HHHHHHcCCCCCCEEEEcCEE
Q 044269 80 TKSLMKLGVKEGDTVIVGDME 100 (129)
Q Consensus 80 ~~aLkkaGakeGDtV~IGd~E 100 (129)
..+|++.|+.+.++|.|||-.
T Consensus 147 ~~a~~~lg~~p~e~l~VgDs~ 167 (216)
T 3kbb_A 147 LLVLERLNVVPEKVVVFEDSK 167 (216)
T ss_dssp HHHHHHHTCCGGGEEEEECSH
T ss_pred HHHHHhhCCCccceEEEecCH
Confidence 456778899999999999853
No 92
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A
Probab=30.65 E-value=28 Score=23.21 Aligned_cols=20 Identities=10% Similarity=0.296 Sum_probs=15.3
Q ss_pred cCCCCCCEEEEcC--------EEEEEEe
Q 044269 86 LGVKEGDTVIVGD--------MEMVWHD 105 (129)
Q Consensus 86 aGakeGDtV~IGd--------~EFey~e 105 (129)
.=+++||.|.||. +.|.|.+
T Consensus 83 ~~L~~GD~i~~G~~~~~~~~~~~f~f~~ 110 (116)
T 1lgp_A 83 CPLQTGDVIYLVYRKNEPEHNVAYLYES 110 (116)
T ss_dssp CCCCTTCEEEEECCSSCGGGCEEEECCC
T ss_pred EECCCCCEEEEeccCCCCCceEEEEEEc
Confidence 4588999999996 4676654
No 93
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*
Probab=30.63 E-value=24 Score=22.03 Aligned_cols=18 Identities=11% Similarity=0.152 Sum_probs=13.4
Q ss_pred HHcCCCCCCEEE-EcCEEE
Q 044269 84 MKLGVKEGDTVI-VGDMEM 101 (129)
Q Consensus 84 kkaGakeGDtV~-IGd~EF 101 (129)
.++|++.||.|. |++...
T Consensus 41 ~~aGl~~GD~I~~ing~~v 59 (91)
T 2pkt_A 41 ALANLCIGDVITAIDGENT 59 (91)
T ss_dssp HHTTCCTTCEEEEETTEEC
T ss_pred HHcCCCCCCEEEEECCEEC
Confidence 368999999874 666554
No 94
>1lpj_A Retinol-binding protein IV, cellular; cellular retinol-binding protein, CRBP, vitamin A, ILBPS, transport protein; 2.00A {Homo sapiens} SCOP: b.60.1.2
Probab=30.49 E-value=26 Score=24.66 Aligned_cols=27 Identities=15% Similarity=0.142 Sum_probs=20.3
Q ss_pred HHHHHHHCChHHHHHHcCCCCCCEEEE
Q 044269 70 FQHGLEACGVTKSLMKLGVKEGDTVIV 96 (129)
Q Consensus 70 F~r~Lk~~GV~~aLkkaGakeGDtV~I 96 (129)
|...|+++||..++++++...-=++.|
T Consensus 16 fdeylkalGv~~~~rk~a~~~kp~~ei 42 (133)
T 1lpj_A 16 FEGYMLALGIDFATRKIAKLLKPQKVI 42 (133)
T ss_dssp HHHHHHHHTCCHHHHHHHTTCCCEEEE
T ss_pred HHHHHHHhCCCHHHHHHHHhCCCeEEE
Confidence 677789999999999998654334333
No 95
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A
Probab=29.84 E-value=26 Score=21.72 Aligned_cols=18 Identities=11% Similarity=0.372 Sum_probs=13.1
Q ss_pred HHcCCCCCCEEE-EcCEEE
Q 044269 84 MKLGVKEGDTVI-VGDMEM 101 (129)
Q Consensus 84 kkaGakeGDtV~-IGd~EF 101 (129)
.++|++.||.|. |++..+
T Consensus 40 ~~aGL~~GD~I~~ing~~v 58 (87)
T 2pa1_A 40 KDADLRPGDIIVAINGESA 58 (87)
T ss_dssp HHTTCCTTCEEEEETTEES
T ss_pred HHcCCCCCCEEEEECCEEC
Confidence 368999999974 566544
No 96
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=29.78 E-value=25 Score=26.07 Aligned_cols=22 Identities=14% Similarity=0.202 Sum_probs=16.4
Q ss_pred HCChHHHHHHcCCCCC-CEEEEc
Q 044269 76 ACGVTKSLMKLGVKEG-DTVIVG 97 (129)
Q Consensus 76 ~~GV~~aLkkaGakeG-DtV~IG 97 (129)
.+|+.++|+++|++-+ |.-.||
T Consensus 204 A~g~~~al~~~g~~vP~di~vig 226 (295)
T 3hcw_A 204 HLAILSVLYELNIEIPKDVMTAT 226 (295)
T ss_dssp HHHHHHHHHHTTCCTTTTEEEEE
T ss_pred HHHHHHHHHHcCCCCCCceEEEE
Confidence 4678999999999954 554444
No 97
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}
Probab=29.38 E-value=26 Score=21.64 Aligned_cols=18 Identities=22% Similarity=0.499 Sum_probs=12.9
Q ss_pred HHcCCCCCCEEE-EcCEEE
Q 044269 84 MKLGVKEGDTVI-VGDMEM 101 (129)
Q Consensus 84 kkaGakeGDtV~-IGd~EF 101 (129)
.++|+++||.|. |++..+
T Consensus 41 ~~aGl~~GD~I~~ing~~v 59 (88)
T 2uzc_A 41 AQANVRIGDVVLSIDGINA 59 (88)
T ss_dssp HHTTCCTTCEEEEETTEEC
T ss_pred HHcCCCCCCEEEEECCEEC
Confidence 357999999864 566544
No 98
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=29.22 E-value=20 Score=27.40 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=19.8
Q ss_pred CChHHHHHHcCCCCCCEEEEcCEEEEEEec
Q 044269 77 CGVTKSLMKLGVKEGDTVIVGDMEMVWHDS 106 (129)
Q Consensus 77 ~GV~~aLkkaGakeGDtV~IGd~EFey~ed 106 (129)
-|+.++|+++|.++|..|. |+|.+.
T Consensus 27 ~G~~~~L~~~G~~~g~nv~-----~~~~~a 51 (302)
T 3lkv_A 27 QGLLDGLKAKGYEEGKNLE-----FDYKTA 51 (302)
T ss_dssp HHHHHHHHHTTCCBTTTEE-----EEEEEC
T ss_pred HHHHHHHHhhCcccCCcEE-----EEEEeC
Confidence 3889999999999998765 456554
No 99
>3qnm_A Haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 1.70A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0
Probab=29.15 E-value=22 Score=24.54 Aligned_cols=21 Identities=14% Similarity=0.246 Sum_probs=17.4
Q ss_pred hHHHHHHcCCCCCCEEEEcCE
Q 044269 79 VTKSLMKLGVKEGDTVIVGDM 99 (129)
Q Consensus 79 V~~aLkkaGakeGDtV~IGd~ 99 (129)
+..+|++.|+.+.++|.|||-
T Consensus 168 ~~~~~~~lgi~~~~~~~iGD~ 188 (240)
T 3qnm_A 168 FHFALSATQSELRESLMIGDS 188 (240)
T ss_dssp HHHHHHHTTCCGGGEEEEESC
T ss_pred HHHHHHHcCCCcccEEEECCC
Confidence 455778889999999999986
No 100
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}
Probab=28.74 E-value=30 Score=21.50 Aligned_cols=18 Identities=28% Similarity=0.424 Sum_probs=12.8
Q ss_pred HHcCCCCCCEEE-EcCEEE
Q 044269 84 MKLGVKEGDTVI-VGDMEM 101 (129)
Q Consensus 84 kkaGakeGDtV~-IGd~EF 101 (129)
.++|++.||.|. |++...
T Consensus 41 ~~aGl~~GD~I~~ing~~v 59 (89)
T 2q3g_A 41 AQAGVAVGDWVLSIDGENA 59 (89)
T ss_dssp HHTTCCTTCEEEEETTEEG
T ss_pred HHcCCCCCCEEEEECCEEC
Confidence 457999999864 555544
No 101
>3ddh_A Putative haloacid dehalogenase-like family hydrol; hydrolase, HAD superfamily, ST genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides thetaiotaomicron}
Probab=28.46 E-value=20 Score=24.47 Aligned_cols=21 Identities=19% Similarity=0.332 Sum_probs=17.4
Q ss_pred hHHHHHHcCCCCCCEEEEcCE
Q 044269 79 VTKSLMKLGVKEGDTVIVGDM 99 (129)
Q Consensus 79 V~~aLkkaGakeGDtV~IGd~ 99 (129)
+..++++.|+.+.++|.|||-
T Consensus 163 ~~~~~~~lgi~~~~~i~iGD~ 183 (234)
T 3ddh_A 163 YLRLLSILQIAPSELLMVGNS 183 (234)
T ss_dssp HHHHHHHHTCCGGGEEEEESC
T ss_pred HHHHHHHhCCCcceEEEECCC
Confidence 445777779999999999986
No 102
>2vqe_Q 30S ribosomal protein S17; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: b.40.4.5 PDB: 1gix_T* 1hnw_Q* 1hnx_Q* 1hnz_Q* 1hr0_Q 1ibk_Q* 1ibl_Q* 1ibm_Q 1jgo_T* 1jgp_T* 1jgq_T* 1ml5_T* 1xmo_Q* 1xmq_Q* 1xnq_Q* 1xnr_Q* 1yl4_T 2b64_Q* 2b9m_Q* 2b9o_Q* ...
Probab=28.32 E-value=22 Score=24.86 Aligned_cols=13 Identities=31% Similarity=0.261 Sum_probs=11.0
Q ss_pred CCCCCCEEEEcCE
Q 044269 87 GVKEGDTVIVGDM 99 (129)
Q Consensus 87 GakeGDtV~IGd~ 99 (129)
-++.||+|.|+..
T Consensus 50 ~~k~GD~V~I~E~ 62 (105)
T 2vqe_Q 50 KYKLGDVVEIIES 62 (105)
T ss_dssp CCCTTCEEEEEEE
T ss_pred CCCCCCEEEEEEc
Confidence 5899999999854
No 103
>1fdq_A Fatty acid-binding protein, brain; omega-3, long chain poly unsaturated fatty acid, lipid binding protein; HET: HXA; 2.10A {Homo sapiens} SCOP: b.60.1.2 PDB: 1fe3_A* 1jjx_A
Probab=28.20 E-value=21 Score=25.07 Aligned_cols=20 Identities=25% Similarity=0.316 Sum_probs=17.4
Q ss_pred HHHHHHHCChHHHHHHcCCC
Q 044269 70 FQHGLEACGVTKSLMKLGVK 89 (129)
Q Consensus 70 F~r~Lk~~GV~~aLkkaGak 89 (129)
|...|+++||..++++++..
T Consensus 16 fdeylkalGv~~~~rk~a~~ 35 (131)
T 1fdq_A 16 FDEYMKALGVGFATRQVGNV 35 (131)
T ss_dssp HHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHhc
Confidence 67789999999999999944
No 104
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=28.20 E-value=20 Score=26.44 Aligned_cols=21 Identities=33% Similarity=0.673 Sum_probs=16.9
Q ss_pred HCChHHHHHHcCCCCCCEEEEc
Q 044269 76 ACGVTKSLMKLGVKEGDTVIVG 97 (129)
Q Consensus 76 ~~GV~~aLkkaGakeGDtV~IG 97 (129)
.+|+.++|+++|++ +|.-.||
T Consensus 205 A~g~~~al~~~G~~-~dv~vvG 225 (288)
T 1gud_A 205 AMGVAQAVANAGKT-GKVLVVG 225 (288)
T ss_dssp HHHHHHHHHHTTCT-TTSEEEE
T ss_pred HHHHHHHHHhcCCC-CCeEEEE
Confidence 57899999999996 7766554
No 105
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A
Probab=28.01 E-value=31 Score=21.57 Aligned_cols=19 Identities=16% Similarity=0.302 Sum_probs=14.8
Q ss_pred HHHcCCCCCCEE-EEcCEEE
Q 044269 83 LMKLGVKEGDTV-IVGDMEM 101 (129)
Q Consensus 83 LkkaGakeGDtV-~IGd~EF 101 (129)
-.++|++.||.| .|++..+
T Consensus 40 A~~aGl~~GD~I~~ing~~v 59 (91)
T 2vsp_A 40 ADLAGLEDEDVIIEVNGVNV 59 (91)
T ss_dssp HHHTTCCTTCEEEEETTEEC
T ss_pred HHHcCCCCCCEEEEECCEEC
Confidence 357899999987 5777665
No 106
>1zjc_A Aminopeptidase AMPS; metallopeptidase, hydrolase; 1.80A {Staphylococcus aureus subsp} SCOP: e.60.1.1
Probab=27.97 E-value=44 Score=28.04 Aligned_cols=31 Identities=23% Similarity=0.405 Sum_probs=24.7
Q ss_pred hcCCCCHHHHHHHHHHHHHCChHHHHHHcCCCCCCEEEEc
Q 044269 58 MTNWRYLDSERRFQHGLEACGVTKSLMKLGVKEGDTVIVG 97 (129)
Q Consensus 58 ~tnfd~~es~~rF~r~Lk~~GV~~aLkkaGakeGDtV~IG 97 (129)
|++| +..+.++.++|-+.|+ ++|+|++|.|-
T Consensus 4 ~~~~--~~~l~k~A~~lV~~~~-------~lq~Ge~VlI~ 34 (418)
T 1zjc_A 4 MTNY--KEKLQQYAELLVKVGM-------NVQPKQPVFIR 34 (418)
T ss_dssp --CH--HHHHHHHHHHHHHTTT-------CCCTTCCEEEE
T ss_pred ccch--HHHHHHHHHHHHHhCc-------CCCCCCEEEEE
Confidence 4444 4678889999999998 99999999984
No 107
>2xxz_A Lysine-specific demethylase 6B; oxidoreductase, histone demethylation, oxygenase, chromatin modification; HET: 8XQ; 1.80A {Homo sapiens}
Probab=27.79 E-value=83 Score=25.94 Aligned_cols=46 Identities=17% Similarity=0.318 Sum_probs=30.4
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHHCChHHHHHHcCC-------CCCCEEEEcCEEEEEE
Q 044269 51 GLQRFVQMTNWRYLDSERRFQHGLEACGVTKSLMKLGV-------KEGDTVIVGDMEMVWH 104 (129)
Q Consensus 51 ~IEr~v~~tnfd~~es~~rF~r~Lk~~GV~~aLkkaGa-------keGDtV~IGd~EFey~ 104 (129)
++|+++++.+.+..+.. -+--.+.|+++|| ++||.|.++..-|-|.
T Consensus 247 ~~e~l~~k~~~d~~~~~--------~~~~p~~L~~~gIPvyr~~QkpGd~Vi~~PgayH~v 299 (332)
T 2xxz_A 247 TISAFCDRHGVDYLTGS--------WWPILDDLYASNIPVYRFVQRPGDLVWINAGTVHWV 299 (332)
T ss_dssp HHHHHHHHTTCCTTTSC--------BCCCHHHHHHTTCCCEEEEECTTCEEEECTTCEEEE
T ss_pred HHHHHHHhcCCchhhce--------ecCCHHHHHhCCCCeEEEEECCCCEEEECCCceEEE
Confidence 56666666554432211 1234789999999 6899999987766663
No 108
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=27.55 E-value=66 Score=21.57 Aligned_cols=36 Identities=6% Similarity=-0.088 Sum_probs=26.4
Q ss_pred cchHHHHHHhcCCCCHHHHHHHHHHHHHCChHHHHHHcCC
Q 044269 49 GAGLQRFVQMTNWRYLDSERRFQHGLEACGVTKSLMKLGV 88 (129)
Q Consensus 49 G~~IEr~v~~tnfd~~es~~rF~r~Lk~~GV~~aLkkaGa 88 (129)
|+.+|+.+.+....+.+.++.. -..-...+|++.|.
T Consensus 13 G~~~e~~L~~vGI~s~e~L~~~----Ga~~ay~rL~~~~~ 48 (93)
T 3bqs_A 13 GKVLEQDLIKAGIKTPVELKDV----GSKEAFLRIWENDS 48 (93)
T ss_dssp CHHHHHHHHHTTCCSHHHHHHH----HHHHHHHHHHTTCT
T ss_pred CHHHHHHHHHcCCCCHHHHHhC----CHHHHHHHHHHHCC
Confidence 8899999999999999988654 33344555665543
No 109
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1
Probab=27.55 E-value=25 Score=22.06 Aligned_cols=18 Identities=22% Similarity=0.366 Sum_probs=13.5
Q ss_pred HHcCCCCCCEE-EEcCEEE
Q 044269 84 MKLGVKEGDTV-IVGDMEM 101 (129)
Q Consensus 84 kkaGakeGDtV-~IGd~EF 101 (129)
.++|++.||.| .|++...
T Consensus 38 ~~aGl~~GD~I~~vng~~v 56 (91)
T 2f5y_A 38 ERAGLQQLDTVLQLNERPV 56 (91)
T ss_dssp HHHTCCTTCEEEEETTEEC
T ss_pred HHcCCCCCCEEEEECCEEC
Confidence 45799999986 5677655
No 110
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}
Probab=27.52 E-value=26 Score=21.51 Aligned_cols=18 Identities=22% Similarity=0.588 Sum_probs=13.4
Q ss_pred HHcCCCCCCEE-EEcCEEE
Q 044269 84 MKLGVKEGDTV-IVGDMEM 101 (129)
Q Consensus 84 kkaGakeGDtV-~IGd~EF 101 (129)
.++|++.||.| .|++..+
T Consensus 37 ~~aGl~~GD~I~~ing~~v 55 (83)
T 2kv8_A 37 DFVGLRAGDQILAVNEINV 55 (83)
T ss_dssp TTTTCCTTCEEEEETTEEC
T ss_pred HHcCCCCCCEEEEECCEEC
Confidence 35799999987 4666655
No 111
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}
Probab=27.32 E-value=31 Score=23.19 Aligned_cols=20 Identities=20% Similarity=0.302 Sum_probs=14.6
Q ss_pred HHHcCCCCCCEE-EEcCEEEE
Q 044269 83 LMKLGVKEGDTV-IVGDMEMV 102 (129)
Q Consensus 83 LkkaGakeGDtV-~IGd~EFe 102 (129)
-.++|+++||.| .|++....
T Consensus 57 A~~AGL~~GD~Il~VnG~~v~ 77 (109)
T 2vsv_A 57 ASVAGAREGDYIVSIQLVDCK 77 (109)
T ss_dssp HHHTTCCTTCEEEEETTEECT
T ss_pred HHHcCCCCCCEEEEECCEECC
Confidence 346799999987 56776653
No 112
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A
Probab=27.30 E-value=30 Score=21.50 Aligned_cols=19 Identities=21% Similarity=0.485 Sum_probs=13.6
Q ss_pred HHHcCCCCCCEEE-EcCEEE
Q 044269 83 LMKLGVKEGDTVI-VGDMEM 101 (129)
Q Consensus 83 LkkaGakeGDtV~-IGd~EF 101 (129)
-.++|++.||.|. |++...
T Consensus 17 A~~aGl~~GD~I~~ing~~v 36 (91)
T 2zpm_A 17 ASXAGLQAGDRIVXVDGQPL 36 (91)
T ss_dssp HHHTTCCTTCEEEEETTEEC
T ss_pred HHhcCCCCCCEEEEECCeEc
Confidence 3468999999875 555544
No 113
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=27.23 E-value=26 Score=21.81 Aligned_cols=18 Identities=22% Similarity=0.143 Sum_probs=13.4
Q ss_pred HHcCCCCCCEE-EEcCEEE
Q 044269 84 MKLGVKEGDTV-IVGDMEM 101 (129)
Q Consensus 84 kkaGakeGDtV-~IGd~EF 101 (129)
.++|++.||.| .|++..+
T Consensus 46 ~~aGl~~GD~I~~vng~~v 64 (91)
T 1m5z_A 46 DLGGLKPYDRLLQVNHVRT 64 (91)
T ss_dssp HHHTCCTTCEEEEETTEEC
T ss_pred HHcCCCCCCEEEEECCEEC
Confidence 34799999987 5677655
No 114
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=27.21 E-value=22 Score=25.57 Aligned_cols=20 Identities=15% Similarity=0.295 Sum_probs=16.5
Q ss_pred CChHHHHHHcCCCCCCEEEEc
Q 044269 77 CGVTKSLMKLGVKEGDTVIVG 97 (129)
Q Consensus 77 ~GV~~aLkkaGakeGDtV~IG 97 (129)
+|+.++|+++|+ ++|...||
T Consensus 200 ~g~~~al~~~g~-p~di~vig 219 (276)
T 3ksm_A 200 IGALVAIRQSGM-SKQFGFIG 219 (276)
T ss_dssp HHHHHHHHHTTC-TTSSEEEE
T ss_pred hHHHHHHHHcCC-CCCeEEEE
Confidence 478899999998 88877665
No 115
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}
Probab=26.97 E-value=26 Score=22.18 Aligned_cols=18 Identities=22% Similarity=0.322 Sum_probs=13.5
Q ss_pred HHcCCCCCCEE-EEcCEEE
Q 044269 84 MKLGVKEGDTV-IVGDMEM 101 (129)
Q Consensus 84 kkaGakeGDtV-~IGd~EF 101 (129)
.++|++.||.| .|++..+
T Consensus 47 ~~aGl~~GD~I~~ing~~v 65 (98)
T 2jxo_A 47 EASGLRAQDRIVEVNGVCM 65 (98)
T ss_dssp HHHTCCTTCEEEEETTEEC
T ss_pred HHcCCCCCCEEEEECCEEC
Confidence 46799999987 4666554
No 116
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}
Probab=26.97 E-value=29 Score=21.82 Aligned_cols=19 Identities=26% Similarity=0.513 Sum_probs=14.1
Q ss_pred HHHcCCCCCCEE-EEcCEEE
Q 044269 83 LMKLGVKEGDTV-IVGDMEM 101 (129)
Q Consensus 83 LkkaGakeGDtV-~IGd~EF 101 (129)
-.++|++.||.| .|++..+
T Consensus 47 A~~aGl~~GD~I~~ing~~v 66 (97)
T 2w4f_A 47 AARAGVRVGDKLLEVNGVAL 66 (97)
T ss_dssp HHHHTCCTTCEEEEETTEEC
T ss_pred HHHcCCCCCCEEEEECCEEC
Confidence 356899999986 5677655
No 117
>1vcz_A RNAse NGR3; hydrolase, ribonuclease; HET: 5GP; 1.80A {Nicotiana glutinosa} PDB: 1vd1_A* 1vd3_A*
Probab=26.86 E-value=21 Score=26.81 Aligned_cols=32 Identities=16% Similarity=0.301 Sum_probs=24.4
Q ss_pred HHHHHHHHHH---HHCChHHHHHHcCCCC--CCEEEE
Q 044269 65 DSERRFQHGL---EACGVTKSLMKLGVKE--GDTVIV 96 (129)
Q Consensus 65 es~~rF~r~L---k~~GV~~aLkkaGake--GDtV~I 96 (129)
+...||+..| ++..+.+.|+++||.+ |.++.+
T Consensus 108 ~~~~YF~~a~~l~~~~n~~~~L~~~gI~Ps~g~~~t~ 144 (217)
T 1vcz_A 108 GERAYFQAALDFRKKSNLLENLKNAEITPRNGEHYTL 144 (217)
T ss_dssp CHHHHHHHHHHHHHHHCHHHHHHHTTCCCEEEEEEEH
T ss_pred CHHHHHHHHHHHHHHcccHHHHHHCCCccCcCccccH
Confidence 4677887665 4688999999999998 655543
No 118
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=26.83 E-value=25 Score=21.14 Aligned_cols=16 Identities=13% Similarity=0.424 Sum_probs=12.9
Q ss_pred HHHHHcCCCCCCEEEE
Q 044269 81 KSLMKLGVKEGDTVIV 96 (129)
Q Consensus 81 ~aLkkaGakeGDtV~I 96 (129)
..|.+.|+++|++|.+
T Consensus 57 ~tL~~~~i~~g~~i~l 72 (77)
T 2bwf_A 57 QTVESYHIQDGHSVHL 72 (77)
T ss_dssp SBTGGGTCCTTCEEEE
T ss_pred CCHHHcCCCCCCEEEE
Confidence 3577789999999875
No 119
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.82 E-value=31 Score=21.78 Aligned_cols=18 Identities=11% Similarity=0.139 Sum_probs=13.0
Q ss_pred HHcCCCCCCEEE-EcCEEE
Q 044269 84 MKLGVKEGDTVI-VGDMEM 101 (129)
Q Consensus 84 kkaGakeGDtV~-IGd~EF 101 (129)
.++|++.||.|. |++...
T Consensus 46 ~~aGl~~GD~I~~ing~~v 64 (94)
T 2eeg_A 46 ALAALCPGDLIQAINGEST 64 (94)
T ss_dssp HHTTCCTTCEEEEETTEET
T ss_pred HHcCCCCCCEEEEECCEEC
Confidence 467999999874 565544
No 120
>3ppt_A Sodium-calcium exchanger; fatty acid transporter, lipid binding proteins, squid nerve, regulatory factor, beta-sandwich, fatty acid; HET: PAM; 1.28A {Loligo pealei} SCOP: b.60.1.0 PDB: 3pp6_A*
Probab=26.72 E-value=18 Score=25.64 Aligned_cols=20 Identities=25% Similarity=0.371 Sum_probs=17.2
Q ss_pred HHHHHHHCChHHHHHHcCCC
Q 044269 70 FQHGLEACGVTKSLMKLGVK 89 (129)
Q Consensus 70 F~r~Lk~~GV~~aLkkaGak 89 (129)
|...|+++||..+++++|..
T Consensus 16 fdeymkalGv~~~~rk~~~~ 35 (133)
T 3ppt_A 16 FDDYMKAVGVGMVMRKMANA 35 (133)
T ss_dssp HHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHhhhhc
Confidence 66778999999999998865
No 121
>1mdc_A Insect fatty acid binding protein; HET: PLM; 1.75A {Manduca sexta} SCOP: b.60.1.2
Probab=26.65 E-value=21 Score=25.18 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=20.8
Q ss_pred HHHHHHHCChHHHHHHcCCCCCCEEEE
Q 044269 70 FQHGLEACGVTKSLMKLGVKEGDTVIV 96 (129)
Q Consensus 70 F~r~Lk~~GV~~aLkkaGakeGDtV~I 96 (129)
|...|+++||..++++++...-=++.|
T Consensus 16 fdeylkalGv~~~~rk~a~~~kp~~ei 42 (132)
T 1mdc_A 16 FDGFLKSAGLSDDKIQALVSDKPTQKM 42 (132)
T ss_dssp HHHHHHTTTCCHHHHHHHHHCCCEEEE
T ss_pred HHHHHHHhCCCHHHHhhhccCCceEEE
Confidence 677899999999999999654444444
No 122
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=26.60 E-value=34 Score=23.89 Aligned_cols=16 Identities=25% Similarity=0.399 Sum_probs=13.1
Q ss_pred CCCCCEEEEcCEEEEE
Q 044269 88 VKEGDTVIVGDMEMVW 103 (129)
Q Consensus 88 akeGDtV~IGd~EFey 103 (129)
+++||+|+||.-..+|
T Consensus 111 L~~GD~I~~G~str~y 126 (130)
T 4h87_A 111 VHVGHVVRFGGSTRLF 126 (130)
T ss_dssp CCTTCEEEETTCSEEE
T ss_pred CCCCCEEEECCceEEE
Confidence 8999999999855554
No 123
>1k6d_A Acetate COA-transferase alpha subunit; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Escherichia coli} SCOP: c.124.1.2
Probab=26.44 E-value=30 Score=26.11 Aligned_cols=19 Identities=21% Similarity=0.426 Sum_probs=15.0
Q ss_pred hHHHHHHcCCCCCCEEEEcCE
Q 044269 79 VTKSLMKLGVKEGDTVIVGDM 99 (129)
Q Consensus 79 V~~aLkkaGakeGDtV~IGd~ 99 (129)
..+|+.. |++||+|.+|++
T Consensus 8 a~eAv~~--IkdG~tv~~ggf 26 (220)
T 1k6d_A 8 LQDATGF--FRDGMTIMVGGF 26 (220)
T ss_dssp HHHHGGG--CCTTCEEEECCB
T ss_pred HHHHHhh--CCCCCEEEECCc
Confidence 4566644 999999999976
No 124
>3exc_X Uncharacterized protein; ferredoxin fold, double split beta-alpha-beta fold, dimer, C aspartate, RNA'ASE, hydrolase; 2.25A {Sulfolobus solfataricus} SCOP: d.58.58.0
Probab=26.43 E-value=1.3e+02 Score=19.79 Aligned_cols=42 Identities=10% Similarity=0.112 Sum_probs=29.5
Q ss_pred hcCCCCHHHHHHHHHHHHHCCh--------------------HHHHHHcCCCCCCEEEEcCE
Q 044269 58 MTNWRYLDSERRFQHGLEACGV--------------------TKSLMKLGVKEGDTVIVGDM 99 (129)
Q Consensus 58 ~tnfd~~es~~rF~r~Lk~~GV--------------------~~aLkkaGakeGDtV~IGd~ 99 (129)
.+|..+..-.+++.+.|++.|+ ...|.+.=-.+.|.|+|+.+
T Consensus 9 ~YDI~~~krr~kv~k~l~~yGl~rvQ~SVFe~~lt~~~~~~L~~~L~~~id~~~Dsv~iy~l 70 (91)
T 3exc_X 9 VYDVSDDSKRNKLANNLKKLGLERIQRSAFEGDMDSQRMKDLVRVVKLIVDTNTDIVHIIPL 70 (91)
T ss_dssp EEECCSHHHHHHHHHHHHHTTCEEEETTEEEEECC--CHHHHHHHHHHHSCTTTCEEEEEEE
T ss_pred EEeCCCchHHHHHHHHHHHhCCccceeeEEEEECCHHHHHHHHHHHHHhcCCCCCEEEEEEe
Confidence 3566677778899999999993 34455443357899988643
No 125
>3l8h_A Putative haloacid dehalogenase-like hydrolase; HAD superfamily, GMHB, D-glycero-D-manno-heptose-1, 7-bispho phosphatase; HET: FX1; 1.68A {Bordetella bronchiseptica}
Probab=26.41 E-value=37 Score=23.02 Aligned_cols=20 Identities=20% Similarity=0.182 Sum_probs=16.3
Q ss_pred HHHHHHcCCCCCCEEEEcCE
Q 044269 80 TKSLMKLGVKEGDTVIVGDM 99 (129)
Q Consensus 80 ~~aLkkaGakeGDtV~IGd~ 99 (129)
..+|++.|+.+.++|.|||-
T Consensus 108 ~~~~~~~~~~~~~~~~vGD~ 127 (179)
T 3l8h_A 108 RDIARRYDVDLAGVPAVGDS 127 (179)
T ss_dssp HHHHHHHTCCCTTCEEEESS
T ss_pred HHHHHHcCCCHHHEEEECCC
Confidence 45677778999999999974
No 126
>2gcx_A FEOA, ferrous iron transport protein A; NMR {Klebsiella pneumoniae} SCOP: b.34.1.2
Probab=26.38 E-value=29 Score=21.45 Aligned_cols=16 Identities=31% Similarity=0.584 Sum_probs=12.5
Q ss_pred HHHHHcCCCCCCEEEE
Q 044269 81 KSLMKLGVKEGDTVIV 96 (129)
Q Consensus 81 ~aLkkaGakeGDtV~I 96 (129)
..|.++|+.+|..|.+
T Consensus 24 ~rL~~lGl~pG~~v~v 39 (75)
T 2gcx_A 24 QKLLSLGMLPGSSFHV 39 (75)
T ss_dssp HHHTTTTCCSSEEEEE
T ss_pred HHHHHCCCCCCCEEEE
Confidence 3466778899999887
No 127
>3s6j_A Hydrolase, haloacid dehalogenase-like family; structural genomics, PSI-2; 2.20A {Pseudomonas syringae PV}
Probab=26.19 E-value=27 Score=24.05 Aligned_cols=22 Identities=18% Similarity=0.373 Sum_probs=17.1
Q ss_pred hHHHHHHcCCCCCCEEEEcCEE
Q 044269 79 VTKSLMKLGVKEGDTVIVGDME 100 (129)
Q Consensus 79 V~~aLkkaGakeGDtV~IGd~E 100 (129)
+..++++.|+.+.++|.|||-.
T Consensus 153 ~~~~~~~l~~~~~~~i~iGD~~ 174 (233)
T 3s6j_A 153 FLAAAKKIGAPIDECLVIGDAI 174 (233)
T ss_dssp HHHHHHHTTCCGGGEEEEESSH
T ss_pred HHHHHHHhCCCHHHEEEEeCCH
Confidence 4467777888999999999743
No 128
>3pjy_A Hypothetical signal peptide protein; DUF192 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.55A {Sinorhizobium meliloti}
Probab=26.15 E-value=36 Score=24.35 Aligned_cols=17 Identities=29% Similarity=0.530 Sum_probs=13.4
Q ss_pred HHHcCCCCCCEEEEcCE
Q 044269 83 LMKLGVKEGDTVIVGDM 99 (129)
Q Consensus 83 LkkaGakeGDtV~IGd~ 99 (129)
..+.|++.||.|.+-.+
T Consensus 113 ~~~~gi~~Gd~v~~~~~ 129 (136)
T 3pjy_A 113 VKRLGVSPGDRLEGAGL 129 (136)
T ss_dssp HHHHTCCTTCEEEETTC
T ss_pred HHhcCCCCCCEEEECcc
Confidence 45669999999997543
No 129
>4a1y_A Myelin P2 protein; transport; HET: PLM; 1.20A {Homo sapiens} PDB: 2wut_A* 4a1h_A* 1pmp_A* 1yiv_A*
Probab=26.11 E-value=19 Score=25.60 Aligned_cols=27 Identities=37% Similarity=0.573 Sum_probs=21.5
Q ss_pred HHHHHHHCChHHHHHHcCC---------CCCCEEEE
Q 044269 70 FQHGLEACGVTKSLMKLGV---------KEGDTVIV 96 (129)
Q Consensus 70 F~r~Lk~~GV~~aLkkaGa---------keGDtV~I 96 (129)
|...|+++||.-++|+++. ++||.+.|
T Consensus 18 fdeylkalGv~~~~Rk~a~~~kp~~~I~~~Gd~~ti 53 (133)
T 4a1y_A 18 FDDYMKALGVGLATRKLGNLAKPTVIISKKGDIITI 53 (133)
T ss_dssp HHHHHHHHTCCHHHHHHHHHCCCEEEEEEETTEEEE
T ss_pred HHHHHHHcCCCHHHHHhHhhCCCeEEEEECCCEEEE
Confidence 6678999999999999885 35666555
No 130
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=26.08 E-value=27 Score=20.66 Aligned_cols=16 Identities=13% Similarity=0.229 Sum_probs=12.7
Q ss_pred HHHHHcCCCCCCEEEE
Q 044269 81 KSLMKLGVKEGDTVIV 96 (129)
Q Consensus 81 ~aLkkaGakeGDtV~I 96 (129)
..|.+.|+++|++|.+
T Consensus 54 ~tL~~~~i~~g~~i~l 69 (76)
T 1ndd_A 54 KTAADYKILGGSVLHL 69 (76)
T ss_dssp SBGGGGTCCTTCEEEE
T ss_pred CcHHHcCCCCCCEEEE
Confidence 3477789999999875
No 131
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A
Probab=26.06 E-value=28 Score=21.30 Aligned_cols=17 Identities=18% Similarity=0.390 Sum_probs=12.9
Q ss_pred HcCCCCCCEE-EEcCEEE
Q 044269 85 KLGVKEGDTV-IVGDMEM 101 (129)
Q Consensus 85 kaGakeGDtV-~IGd~EF 101 (129)
++|++.||.| .|++..+
T Consensus 40 ~aGl~~GD~I~~vng~~v 57 (85)
T 1rgw_A 40 QSQLSQGDLVVAIDGVNT 57 (85)
T ss_dssp HSSCCCCSBEEEETTEEC
T ss_pred HcCCCCCCEEEEECCEEC
Confidence 5899999987 4666654
No 132
>3cdk_A Succinyl-COA:3-ketoacid-coenzyme A transferase subunit A; CO-expressed complex, hetero-tetramer, structural genomics, PSI-2; 2.59A {Bacillus subtilis}
Probab=25.87 E-value=37 Score=26.13 Aligned_cols=20 Identities=25% Similarity=0.488 Sum_probs=16.3
Q ss_pred ChHHHHHHcCCCCCCEEEEcCE
Q 044269 78 GVTKSLMKLGVKEGDTVIVGDM 99 (129)
Q Consensus 78 GV~~aLkkaGakeGDtV~IGd~ 99 (129)
-..+|+. .|++||+|.+|++
T Consensus 10 sa~eAv~--~IkdG~tV~~ggf 29 (241)
T 3cdk_A 10 SSKEAAK--LIHDGDTLIAGGF 29 (241)
T ss_dssp CHHHHHT--TCCTTCEEEECCB
T ss_pred CHHHHHh--hCCCCCEEEECCc
Confidence 4567775 7999999999985
No 133
>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid dehalogenase-like hydrolas structural genomics, joint center for structural genomics; HET: MSE; 2.10A {Clostridium difficile} SCOP: c.108.1.0
Probab=25.78 E-value=34 Score=24.72 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=18.6
Q ss_pred ChHHHHHHcCCCCCCEEEEcCE
Q 044269 78 GVTKSLMKLGVKEGDTVIVGDM 99 (129)
Q Consensus 78 GV~~aLkkaGakeGDtV~IGd~ 99 (129)
|+...++..|+...++|.|||-
T Consensus 204 ~l~~l~~~lgi~~~~~i~~GD~ 225 (274)
T 3fzq_A 204 AIKRLQERLGVTQKETICFGDG 225 (274)
T ss_dssp HHHHHHHHHTCCSTTEEEECCS
T ss_pred HHHHHHHHcCCCHHHEEEECCC
Confidence 4566799999999999999973
No 134
>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Probab=25.72 E-value=33 Score=21.72 Aligned_cols=19 Identities=26% Similarity=0.471 Sum_probs=14.3
Q ss_pred HHHcCCCCCCEE-EEcCEEE
Q 044269 83 LMKLGVKEGDTV-IVGDMEM 101 (129)
Q Consensus 83 LkkaGakeGDtV-~IGd~EF 101 (129)
-.++|++.||.| .|++...
T Consensus 50 A~~aGL~~GD~I~~ing~~v 69 (96)
T 2ego_A 50 AQLAGLTPGDTIASVNGLNV 69 (96)
T ss_dssp HHHTTCCTTCEEEEETTEEC
T ss_pred HHHcCCCCCCEEEEECCEEC
Confidence 357899999987 4666654
No 135
>3rsw_A Fatty acid-binding protein, heart; lipid carrier, molecular chaperone, heart fatty acid binding type 2 diabetes, atherosclerosis, chaperone; 2.60A {Homo sapiens} PDB: 1g5w_A 1hmr_A* 1hms_A* 1hmt_A* 2hmb_A* 1bwy_A
Probab=25.54 E-value=25 Score=25.96 Aligned_cols=20 Identities=15% Similarity=0.218 Sum_probs=17.1
Q ss_pred HHHHHHHCChHHHHHHcCCC
Q 044269 70 FQHGLEACGVTKSLMKLGVK 89 (129)
Q Consensus 70 F~r~Lk~~GV~~aLkkaGak 89 (129)
|...|+++||..++++++..
T Consensus 42 fdeymkalGV~~~~Rk~a~~ 61 (158)
T 3rsw_A 42 FDDYMKSLGVGFATRQVASM 61 (158)
T ss_dssp HHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHh
Confidence 66778999999999999854
No 136
>1poi_A Glutaconate coenzyme A-transferase; COA, glutamate, protein fermentation; 2.50A {Acidaminococcus fermentans} SCOP: c.124.1.2
Probab=25.48 E-value=42 Score=26.88 Aligned_cols=21 Identities=24% Similarity=0.561 Sum_probs=16.0
Q ss_pred ChHHHHHHcCCCCCCEEEEcCE
Q 044269 78 GVTKSLMKLGVKEGDTVIVGDM 99 (129)
Q Consensus 78 GV~~aLkkaGakeGDtV~IGd~ 99 (129)
-..+|+++. |++||||.+|++
T Consensus 5 sa~eAv~~~-IkdG~tV~~gGf 25 (317)
T 1poi_A 5 TLKDAIAKY-VHSGDHIALGGF 25 (317)
T ss_dssp CHHHHHHHH-CCTTCEEEECSB
T ss_pred CHHHHHHhh-CCCCCEEEECCc
Confidence 456677433 999999999985
No 137
>2k5f_A Ferrous iron transport protein A; SH3-like, alpha+beta, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum}
Probab=25.27 E-value=47 Score=22.51 Aligned_cols=16 Identities=38% Similarity=0.665 Sum_probs=12.5
Q ss_pred HHHHHcCCCCCCEEEE
Q 044269 81 KSLMKLGVKEGDTVIV 96 (129)
Q Consensus 81 ~aLkkaGakeGDtV~I 96 (129)
+.|.++|+.+|.+|.|
T Consensus 25 rrL~~lGl~pG~~V~V 40 (105)
T 2k5f_A 25 RRLMDLGLVRGAKLKV 40 (105)
T ss_dssp HHHHHHTCSTTCEEEE
T ss_pred HHHHHcCCCCCCEEEE
Confidence 3466778999999877
No 138
>1crb_A Cellular retinol binding protein; cellular lipophilic transport protein; HET: RTL; 2.10A {Rattus rattus} SCOP: b.60.1.2 PDB: 1mx7_A 1mx8_A* 1jbh_A 1kgl_A*
Probab=25.19 E-value=23 Score=24.97 Aligned_cols=20 Identities=30% Similarity=0.306 Sum_probs=17.5
Q ss_pred HHHHHHHCChHHHHHHcCCC
Q 044269 70 FQHGLEACGVTKSLMKLGVK 89 (129)
Q Consensus 70 F~r~Lk~~GV~~aLkkaGak 89 (129)
|...|+++||..++++++..
T Consensus 16 fdeylkalGv~~~~rk~a~~ 35 (134)
T 1crb_A 16 FEEYLRALDVNVALRKIANL 35 (134)
T ss_dssp HHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHhhc
Confidence 67789999999999999864
No 139
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=25.12 E-value=32 Score=21.68 Aligned_cols=18 Identities=11% Similarity=0.363 Sum_probs=13.2
Q ss_pred HHcCCCCCCEEE-EcCEEE
Q 044269 84 MKLGVKEGDTVI-VGDMEM 101 (129)
Q Consensus 84 kkaGakeGDtV~-IGd~EF 101 (129)
.++|++.||.|. |++..+
T Consensus 44 ~~aGL~~GD~I~~ing~~v 62 (94)
T 1vb7_A 44 EAADLRPGDIIVAINGQSA 62 (94)
T ss_dssp HHHTCCTTCEEEEETTEEC
T ss_pred HHCCCCCCCEEEEECCEEC
Confidence 467999999875 566554
No 140
>3q6l_A Fatty acid-binding protein, adipocyte; lipid chaperone, lipid binding protein; 1.40A {Homo sapiens} PDB: 2q9s_A* 2qm9_A*
Probab=25.07 E-value=20 Score=26.23 Aligned_cols=20 Identities=20% Similarity=0.215 Sum_probs=16.9
Q ss_pred HHHHHHHCChHHHHHHcCCC
Q 044269 70 FQHGLEACGVTKSLMKLGVK 89 (129)
Q Consensus 70 F~r~Lk~~GV~~aLkkaGak 89 (129)
|...|+++||..++++++..
T Consensus 37 fdeymkalGv~~~~Rk~a~~ 56 (152)
T 3q6l_A 37 FDDYMKEVGVGFATRKVAGM 56 (152)
T ss_dssp HHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHh
Confidence 66678999999999998864
No 141
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}
Probab=25.01 E-value=27 Score=21.99 Aligned_cols=18 Identities=28% Similarity=0.486 Sum_probs=13.5
Q ss_pred HHcCCCCCCEE-EEcCEEE
Q 044269 84 MKLGVKEGDTV-IVGDMEM 101 (129)
Q Consensus 84 kkaGakeGDtV-~IGd~EF 101 (129)
.++|++.||.| .|++..+
T Consensus 44 ~~aGl~~GD~I~~ing~~v 62 (96)
T 2v90_A 44 KKAGMQAGDRLVAVAGESV 62 (96)
T ss_dssp HHTTCCTTEEEEEETTEEC
T ss_pred HHcCCCCCCEEEEECCEEC
Confidence 56899999987 4666554
No 142
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=24.99 E-value=28 Score=20.61 Aligned_cols=16 Identities=13% Similarity=0.341 Sum_probs=12.6
Q ss_pred HHHHHcCCCCCCEEEE
Q 044269 81 KSLMKLGVKEGDTVIV 96 (129)
Q Consensus 81 ~aLkkaGakeGDtV~I 96 (129)
..|.+.|+++|++|.+
T Consensus 54 ~tL~~~~i~~g~~i~l 69 (76)
T 3a9j_A 54 RTLSDYNIQRESTLHL 69 (76)
T ss_dssp CBTGGGTCCTTCEEEE
T ss_pred CcHHHcCCCCCCEEEE
Confidence 3467779999999875
No 143
>3h0g_E DNA-directed RNA polymerases I, II, and III subunit rpabc1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=24.88 E-value=37 Score=26.37 Aligned_cols=14 Identities=36% Similarity=0.539 Sum_probs=11.4
Q ss_pred HHcCCCCCCEEEEc
Q 044269 84 MKLGVKEGDTVIVG 97 (129)
Q Consensus 84 kkaGakeGDtV~IG 97 (129)
+-.|++.||.|+|-
T Consensus 181 ~~~g~k~GdVvkI~ 194 (210)
T 3h0g_E 181 RYLGLKRGEVVKIV 194 (210)
T ss_dssp HHHTCCTTCEEEEE
T ss_pred hhhCCCCCCEEEEE
Confidence 33499999999983
No 144
>3j20_R 30S ribosomal protein S17P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.87 E-value=27 Score=24.76 Aligned_cols=12 Identities=33% Similarity=0.714 Sum_probs=10.3
Q ss_pred CCCCCCEEEEcC
Q 044269 87 GVKEGDTVIVGD 98 (129)
Q Consensus 87 GakeGDtV~IGd 98 (129)
-++.||+|.|+.
T Consensus 79 ~~~vGD~V~I~E 90 (113)
T 3j20_R 79 NAKVGDKVLIAE 90 (113)
T ss_dssp CCCTTSEEEEEE
T ss_pred CCCCCCEEEEEe
Confidence 589999999973
No 145
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0
Probab=24.84 E-value=38 Score=21.72 Aligned_cols=18 Identities=28% Similarity=0.446 Sum_probs=13.5
Q ss_pred HHcCCCCCCEE-EEcCEEE
Q 044269 84 MKLGVKEGDTV-IVGDMEM 101 (129)
Q Consensus 84 kkaGakeGDtV-~IGd~EF 101 (129)
.++|++.||.| .|++..+
T Consensus 40 ~~aGl~~GD~I~~ing~~v 58 (106)
T 3ngh_A 40 EKAGLLDGDRVLRINGVFV 58 (106)
T ss_dssp HHTTCCTTCEEEEETTEEC
T ss_pred HHcCCCCCCEEEEECCEEC
Confidence 46899999987 5666654
No 146
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Probab=24.79 E-value=31 Score=21.48 Aligned_cols=18 Identities=17% Similarity=0.353 Sum_probs=13.4
Q ss_pred HHcCCCCCCEE-EEcCEEE
Q 044269 84 MKLGVKEGDTV-IVGDMEM 101 (129)
Q Consensus 84 kkaGakeGDtV-~IGd~EF 101 (129)
.++|++.||.| .|++..+
T Consensus 42 ~~aGl~~GD~I~~ing~~v 60 (90)
T 2he4_A 42 ARSGLRAQDRLIEVNGQNV 60 (90)
T ss_dssp HHHTCCTTCEEEEETTEEC
T ss_pred HHCCCCCCCEEEEECCEEC
Confidence 56799999987 4666554
No 147
>1dzf_A DNA-directed RNA polymerases I, II, and III 27 KD polypeptide; RNA polymerase subunit; 1.9A {Saccharomyces cerevisiae} SCOP: c.52.3.1 d.78.1.1 PDB: 1i3q_E 1i50_E 1i6h_E 1k83_E* 1nik_E 1nt9_E 1pqv_E 1r5u_E 1r9s_E* 1r9t_E* 1sfo_E* 1twa_E* 1twc_E* 1twf_E* 1twg_E* 1twh_E* 1wcm_E 1y1v_E 1y1w_E 1y1y_E ...
Probab=24.73 E-value=38 Score=26.46 Aligned_cols=14 Identities=36% Similarity=0.695 Sum_probs=11.6
Q ss_pred HHHcCCCCCCEEEE
Q 044269 83 LMKLGVKEGDTVIV 96 (129)
Q Consensus 83 LkkaGakeGDtV~I 96 (129)
.+-.|++.||.|+|
T Consensus 185 ar~~g~k~G~vvkI 198 (215)
T 1dzf_A 185 ALYLGLKRGEVVKI 198 (215)
T ss_dssp HHHHTCCTTCEEEE
T ss_pred hHHhCCcCCCEEEE
Confidence 34459999999998
No 148
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A
Probab=24.65 E-value=35 Score=22.75 Aligned_cols=19 Identities=26% Similarity=0.440 Sum_probs=14.0
Q ss_pred HHHcCCCCCCEE-EEcCEEE
Q 044269 83 LMKLGVKEGDTV-IVGDMEM 101 (129)
Q Consensus 83 LkkaGakeGDtV-~IGd~EF 101 (129)
-.++|++.||.| .|++...
T Consensus 48 A~~aGL~~GD~Il~vng~~v 67 (94)
T 3kzd_A 48 ASKKGLKAGDEILEINNRAA 67 (94)
T ss_dssp HHHTTCCTTCEEEEETTEEG
T ss_pred HHHcCCCCCCEEEEECCEEC
Confidence 357899999987 5666554
No 149
>1wv8_A TT1413, hypothetical protein TTHA1013; structural genomics, unknown function, novel F riken structural genomics/proteomics initiative, RSGI; 2.20A {Thermus thermophilus} SCOP: d.304.1.1
Probab=24.64 E-value=78 Score=20.71 Aligned_cols=55 Identities=15% Similarity=0.160 Sum_probs=33.2
Q ss_pred EEEEcCCCCeEEEEcchHHHHHHhcCCCCHHHHHHHHHHHHHCChHHHHHHcCCCCCCEEE
Q 044269 35 EIFHDSGSNTWNVVGAGLQRFVQMTNWRYLDSERRFQHGLEACGVTKSLMKLGVKEGDTVI 95 (129)
Q Consensus 35 ~I~k~~e~g~f~V~G~~IEr~v~~tnfd~~es~~rF~r~Lk~~GV~~aLkkaGakeGDtV~ 95 (129)
.+..+.+.|+|+.+.+.|.-++..-+ ++.-|.++++.+ +.+.|...|...++-|.
T Consensus 7 ~~~~Deeagv~vA~s~di~Glvtea~-----Tleel~~~i~~~-i~~lLe~n~~~~~~~i~ 61 (73)
T 1wv8_A 7 QALWDGEAGVWVAESDDVPGLATEAA-----TLEELLAKLAVM-VPELLEENGVALELPVE 61 (73)
T ss_dssp EEEEETTTTEEEEECSSSTTCCCEES-----SHHHHHHHHHHH-HHHHHHHSCCCCCSSCE
T ss_pred EEEEeCCCCEEEEECCCCCceeeecC-----CHHHHHHHHHHH-HHHHHHhcCCCCCCcEE
Confidence 34455334999999988876654332 344445555543 55666667777755544
No 150
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=24.57 E-value=31 Score=25.25 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=17.0
Q ss_pred HHCChHHHHHHcCCCCC-CEEEEc
Q 044269 75 EACGVTKSLMKLGVKEG-DTVIVG 97 (129)
Q Consensus 75 k~~GV~~aLkkaGakeG-DtV~IG 97 (129)
-.+|+.++|+++|++-+ |.-.||
T Consensus 189 ~A~g~~~al~~~g~~vP~di~vig 212 (277)
T 3hs3_A 189 YAAEIIKEAKRRNLKIPDDFQLVG 212 (277)
T ss_dssp HHHHHHHHHHHTTCCTTTTCEEEC
T ss_pred HHHHHHHHHHHcCCCCCCceEEEe
Confidence 35689999999999954 554444
No 151
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Probab=24.51 E-value=36 Score=21.10 Aligned_cols=18 Identities=28% Similarity=0.388 Sum_probs=14.0
Q ss_pred HHcCCCCCCEE-EEcCEEE
Q 044269 84 MKLGVKEGDTV-IVGDMEM 101 (129)
Q Consensus 84 kkaGakeGDtV-~IGd~EF 101 (129)
.++|++.||.| .|++..+
T Consensus 41 ~~aGL~~GD~I~~ing~~v 59 (91)
T 1g9o_A 41 EKAGLLAGDRLVEVNGENV 59 (91)
T ss_dssp HHTTCCTTCEEEEETTEEC
T ss_pred HHCCCCCCCEEEEECCEEC
Confidence 57899999987 5677655
No 152
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}
Probab=24.46 E-value=41 Score=21.29 Aligned_cols=21 Identities=19% Similarity=0.188 Sum_probs=15.8
Q ss_pred HHHHHHcCCCCCCEEEEcCEE
Q 044269 80 TKSLMKLGVKEGDTVIVGDME 100 (129)
Q Consensus 80 ~~aLkkaGakeGDtV~IGd~E 100 (129)
..++++.|+.+.++|.|||-.
T Consensus 81 ~~~~~~~~~~~~~~~~vgD~~ 101 (137)
T 2pr7_A 81 QAAADAIDLPMRDCVLVDDSI 101 (137)
T ss_dssp HHHHHHTTCCGGGEEEEESCH
T ss_pred HHHHHHcCCCcccEEEEcCCH
Confidence 345666788889999999753
No 153
>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}
Probab=24.44 E-value=28 Score=23.89 Aligned_cols=18 Identities=11% Similarity=0.239 Sum_probs=12.8
Q ss_pred HHcCCCCCCEE-EEcCEEE
Q 044269 84 MKLGVKEGDTV-IVGDMEM 101 (129)
Q Consensus 84 kkaGakeGDtV-~IGd~EF 101 (129)
.+||+++||.| .|++...
T Consensus 53 ~~AGL~~GD~I~~Ing~~v 71 (101)
T 3qik_A 53 EVAGLQVGRKIYSINEDLV 71 (101)
T ss_dssp HHHTCCTTCBEEEETTEES
T ss_pred HHcCCCCCCEEEEECCEEc
Confidence 46799999965 5666553
No 154
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=24.36 E-value=19 Score=22.88 Aligned_cols=18 Identities=33% Similarity=0.545 Sum_probs=14.6
Q ss_pred HHHHHcCCCCCCEEEEcC
Q 044269 81 KSLMKLGVKEGDTVIVGD 98 (129)
Q Consensus 81 ~aLkkaGakeGDtV~IGd 98 (129)
+-|.+.|+++|++|.+-+
T Consensus 59 ~tL~~~gl~~g~~l~v~~ 76 (86)
T 2kzr_A 59 ITLGDLPIQSGDMLIVEE 76 (86)
T ss_dssp CBTTTSSCCTTCEEECCC
T ss_pred CCHHHcCCCCCCEEEEEe
Confidence 458889999999988653
No 155
>4gib_A Beta-phosphoglucomutase; rossmann fold, HAD-like, structural genomics, center for structural genomics of infectious DISE csgid, isomerase; 2.27A {Clostridium difficile}
Probab=24.36 E-value=33 Score=24.91 Aligned_cols=20 Identities=20% Similarity=0.160 Sum_probs=16.2
Q ss_pred HHHHHHcCCCCCCEEEEcCE
Q 044269 80 TKSLMKLGVKEGDTVIVGDM 99 (129)
Q Consensus 80 ~~aLkkaGakeGDtV~IGd~ 99 (129)
..+|++.|+.+.++|.|||-
T Consensus 177 ~~a~~~lg~~p~e~l~VGDs 196 (250)
T 4gib_A 177 LMSAKGLNVNPQNCIGIEDA 196 (250)
T ss_dssp HHHHHHHTCCGGGEEEEESS
T ss_pred HHHHHHhCCChHHeEEECCC
Confidence 35677889999999999963
No 156
>3nas_A Beta-PGM, beta-phosphoglucomutase; PSI, structural genomics, protein structure initiative, NEW research center for structural genomics; 3.00A {Bacillus subtilis}
Probab=24.32 E-value=26 Score=24.40 Aligned_cols=48 Identities=8% Similarity=-0.030 Sum_probs=28.1
Q ss_pred chHHHHHHhcCCCCH-------HHHHHHHHHHHHCChHHHHHHcCCCCCCEEEEcCE
Q 044269 50 AGLQRFVQMTNWRYL-------DSERRFQHGLEACGVTKSLMKLGVKEGDTVIVGDM 99 (129)
Q Consensus 50 ~~IEr~v~~tnfd~~-------es~~rF~r~Lk~~GV~~aLkkaGakeGDtV~IGd~ 99 (129)
+.++.++...++..+ +.+. ..+=+.-++..++++.|+.+.++|.|||-
T Consensus 118 ~~~~~~l~~~gl~~~f~~i~~~~~~~--~~Kp~~~~~~~~~~~lgi~~~~~i~vGDs 172 (233)
T 3nas_A 118 RNAPKILRRLAIIDDFHAIVDPTTLA--KGKPDPDIFLTAAAMLDVSPADCAAIEDA 172 (233)
T ss_dssp TTHHHHHHHTTCTTTCSEECCC-----------CCHHHHHHHHHTSCGGGEEEEECS
T ss_pred hhHHHHHHHcCcHhhcCEEeeHhhCC--CCCCChHHHHHHHHHcCCCHHHEEEEeCC
Confidence 346777777665421 1110 11222345677888889999999999975
No 157
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=24.25 E-value=17 Score=24.87 Aligned_cols=20 Identities=35% Similarity=0.704 Sum_probs=15.1
Q ss_pred hHHHHHHcCCCCCCEEEEcC
Q 044269 79 VTKSLMKLGVKEGDTVIVGD 98 (129)
Q Consensus 79 V~~aLkkaGakeGDtV~IGd 98 (129)
+.+.|++.|+.+||.|.|-|
T Consensus 64 L~k~l~eLgl~~g~ei~VtD 83 (98)
T 1y8x_B 64 LSKTLKELGLVDGQELAVAD 83 (98)
T ss_dssp HHSBSGGGTCCTTCEEEEEC
T ss_pred hhCCHHHhCCCCCCEEEEEC
Confidence 34447778899999999854
No 158
>3vay_A HAD-superfamily hydrolase; rossmann fold, haloacid dehalogenase; 1.98A {Pseudomonas syringae PV}
Probab=24.19 E-value=27 Score=24.16 Aligned_cols=21 Identities=29% Similarity=0.366 Sum_probs=16.9
Q ss_pred hHHHHHHcCCCCCCEEEEcCE
Q 044269 79 VTKSLMKLGVKEGDTVIVGDM 99 (129)
Q Consensus 79 V~~aLkkaGakeGDtV~IGd~ 99 (129)
+..++++.|+.+.++|.|||-
T Consensus 161 ~~~~~~~~~~~~~~~~~vGD~ 181 (230)
T 3vay_A 161 FLEALRRAKVDASAAVHVGDH 181 (230)
T ss_dssp HHHHHHHHTCCGGGEEEEESC
T ss_pred HHHHHHHhCCCchheEEEeCC
Confidence 455667778999999999975
No 159
>3umg_A Haloacid dehalogenase; defluorinase, hydrolase; 2.25A {Rhodococcus jostii}
Probab=24.11 E-value=31 Score=24.01 Aligned_cols=22 Identities=14% Similarity=0.359 Sum_probs=17.8
Q ss_pred ChHHHHHHcCCCCCCEEEEcCE
Q 044269 78 GVTKSLMKLGVKEGDTVIVGDM 99 (129)
Q Consensus 78 GV~~aLkkaGakeGDtV~IGd~ 99 (129)
++..++++.|+.+.+++.|||-
T Consensus 174 ~~~~~~~~lgi~~~~~~~iGD~ 195 (254)
T 3umg_A 174 AYLRTAQVLGLHPGEVMLAAAH 195 (254)
T ss_dssp HHHHHHHHTTCCGGGEEEEESC
T ss_pred HHHHHHHHcCCChHHEEEEeCC
Confidence 3456788889999999999975
No 160
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=24.10 E-value=29 Score=25.45 Aligned_cols=20 Identities=15% Similarity=0.330 Sum_probs=16.2
Q ss_pred CChHHHHHHcCCCCCCEEEEc
Q 044269 77 CGVTKSLMKLGVKEGDTVIVG 97 (129)
Q Consensus 77 ~GV~~aLkkaGakeGDtV~IG 97 (129)
+|+.++|+++|++ +|...||
T Consensus 202 ~g~~~al~~~g~~-~dv~vig 221 (303)
T 3d02_A 202 IGAGRAVKEKRAK-NKVAVYG 221 (303)
T ss_dssp HHHHHHHHHTTCT-TTCEEEE
T ss_pred hHHHHHHHhcCCC-CCeEEEE
Confidence 4788999999999 7766655
No 161
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=23.93 E-value=27 Score=25.67 Aligned_cols=21 Identities=19% Similarity=0.302 Sum_probs=17.0
Q ss_pred HCChHHHHHHcCCCCCCEEEEc
Q 044269 76 ACGVTKSLMKLGVKEGDTVIVG 97 (129)
Q Consensus 76 ~~GV~~aLkkaGakeGDtV~IG 97 (129)
.+|+.++|+++|++ +|.-.||
T Consensus 199 a~g~~~al~~~g~~-~di~vig 219 (305)
T 3g1w_A 199 GVGVGDAVRLESRA-GEIQIIS 219 (305)
T ss_dssp HHHHHHHHHHTTCT-TTSEEEE
T ss_pred hhhHHHHHHhcCCC-CCeEEEE
Confidence 35889999999999 8866654
No 162
>4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1, inhibitor, lysine specific HI demethylase; HET: K0I; 1.86A {Homo sapiens} PDB: 2xue_A* 4eyu_A* 4ez4_A* 4ezh_A*
Probab=23.86 E-value=83 Score=27.60 Aligned_cols=26 Identities=19% Similarity=0.394 Sum_probs=22.2
Q ss_pred HHHHHHcCC-------CCCCEEEEcCEEEEEEe
Q 044269 80 TKSLMKLGV-------KEGDTVIVGDMEMVWHD 105 (129)
Q Consensus 80 ~~aLkkaGa-------keGDtV~IGd~EFey~e 105 (129)
.+.|+++|| ++||.|.++...+-|.-
T Consensus 302 pe~L~kagIPvyr~iQkPGdfVit~PgtyH~Vq 334 (510)
T 4ask_A 302 LDDLYASNIPVYRFVQRPGDLVWINAGTVHWVQ 334 (510)
T ss_dssp HHHHHHTTCCCEEEEECTTCEEEECTTCEEEEE
T ss_pred HHHHHhCCCCeEEEEECCCCEEEECCCceEEEE
Confidence 589999999 59999999888777754
No 163
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A
Probab=23.85 E-value=32 Score=21.74 Aligned_cols=18 Identities=50% Similarity=0.706 Sum_probs=13.8
Q ss_pred HHcCCCCCCEE-EEcCEEE
Q 044269 84 MKLGVKEGDTV-IVGDMEM 101 (129)
Q Consensus 84 kkaGakeGDtV-~IGd~EF 101 (129)
.++|++.||.| .|++..+
T Consensus 43 ~~aGL~~GD~I~~ing~~v 61 (93)
T 2dls_A 43 MKAGVKEGDRIIKVNGTMV 61 (93)
T ss_dssp TTTTCCSSCEEEEETTEEC
T ss_pred HHcCCCCCCEEEEECCEEC
Confidence 46899999987 5676655
No 164
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=23.77 E-value=50 Score=27.65 Aligned_cols=17 Identities=29% Similarity=0.563 Sum_probs=13.0
Q ss_pred HHHHHcCCCCCCEEEEc
Q 044269 81 KSLMKLGVKEGDTVIVG 97 (129)
Q Consensus 81 ~aLkkaGakeGDtV~IG 97 (129)
..|+++|++.||.|-|.
T Consensus 101 ~~L~~~Gv~~Gd~V~l~ 117 (580)
T 3etc_A 101 NFFVKHGIGKGDYVMLT 117 (580)
T ss_dssp HHHHHTTCCTTCEEEEE
T ss_pred HHHHHcCCCCCCEEEEE
Confidence 34566789999999873
No 165
>1eal_A Gastrotropin, ileal lipid binding protein; intracellular lipid binding protein, bIle acid binding, ileal epithelium, fatty acid binding protein; NMR {Sus scrofa} SCOP: b.60.1.2 PDB: 1eio_A* 1o1u_A 1o1v_A*
Probab=23.70 E-value=21 Score=25.00 Aligned_cols=21 Identities=0% Similarity=0.039 Sum_probs=17.7
Q ss_pred HHHHHHHCChHHHHHHcCCCC
Q 044269 70 FQHGLEACGVTKSLMKLGVKE 90 (129)
Q Consensus 70 F~r~Lk~~GV~~aLkkaGake 90 (129)
|...|+++||..++++++...
T Consensus 14 fdeymkalGv~~~~rk~a~~~ 34 (127)
T 1eal_A 14 YDEFMKRLALPSDAIDKARNL 34 (127)
T ss_dssp TTHHHHHHTCCHHHHHHHTTC
T ss_pred HHHHHHHhCCCHHHHHhhhcC
Confidence 556789999999999999765
No 166
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=23.65 E-value=31 Score=25.61 Aligned_cols=22 Identities=36% Similarity=0.632 Sum_probs=16.5
Q ss_pred HCChHHHHHHcCCCCC-CEEEEc
Q 044269 76 ACGVTKSLMKLGVKEG-DTVIVG 97 (129)
Q Consensus 76 ~~GV~~aLkkaGakeG-DtV~IG 97 (129)
.+|+.++|+++|++-+ |.-.||
T Consensus 209 A~g~~~al~~~G~~vP~di~vig 231 (303)
T 3kke_A 209 AVGALSTALRLGLRVPEDLSIVG 231 (303)
T ss_dssp HHHHHHHHHHTTCCTTTTCEEEE
T ss_pred HHHHHHHHHHcCCCCCCceEEEE
Confidence 4689999999999954 554444
No 167
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}
Probab=23.63 E-value=35 Score=22.40 Aligned_cols=18 Identities=28% Similarity=0.542 Sum_probs=12.9
Q ss_pred HHcCCCCCCEEE-EcCEEE
Q 044269 84 MKLGVKEGDTVI-VGDMEM 101 (129)
Q Consensus 84 kkaGakeGDtV~-IGd~EF 101 (129)
.++|++.||.|. |++..+
T Consensus 52 ~~aGL~~GD~I~~ing~~v 70 (114)
T 2edz_A 52 EKAGLLDGDRVLRINGVFV 70 (114)
T ss_dssp GGGTCCTTCEEEEESSSBC
T ss_pred HHcCCCCCCEEEEECCEEC
Confidence 468999999874 555443
No 168
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=23.57 E-value=32 Score=22.03 Aligned_cols=18 Identities=22% Similarity=0.471 Sum_probs=12.8
Q ss_pred HHcCCCCCCEEE-EcCEEE
Q 044269 84 MKLGVKEGDTVI-VGDMEM 101 (129)
Q Consensus 84 kkaGakeGDtV~-IGd~EF 101 (129)
.++|++.||.|. |++...
T Consensus 45 ~~aGL~~GD~Il~Ing~~v 63 (90)
T 1y7n_A 45 ERGGVRVGHRIIEINGQSV 63 (90)
T ss_dssp HHHTCCSSCEEEEETTEEC
T ss_pred HHcCCCCCCEEEEECCEEC
Confidence 367999999875 555544
No 169
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=23.51 E-value=28 Score=25.29 Aligned_cols=21 Identities=14% Similarity=0.392 Sum_probs=16.2
Q ss_pred HCChHHHHHHcCCCCCCEEEEc
Q 044269 76 ACGVTKSLMKLGVKEGDTVIVG 97 (129)
Q Consensus 76 ~~GV~~aLkkaGakeGDtV~IG 97 (129)
.+|+.++|+++|++ +|.-.||
T Consensus 202 a~g~~~al~~~G~~-~di~vvg 222 (289)
T 3brs_A 202 ATGAARAIKDMSLE-AKVKLVC 222 (289)
T ss_dssp HHHHHHHHHHTTCT-TTSEEEE
T ss_pred hHHHHHHHHhcCCC-CCEEEEE
Confidence 35788999999999 7765543
No 170
>1ztp_A Basophilic leukemia expressed protein BLES03; HS.433573, BC010512, structural genomics, Pro structure initiative, PSI, CESG; HET: MSE; 2.50A {Homo sapiens} SCOP: d.86.1.2 PDB: 2q4k_A
Probab=23.44 E-value=52 Score=26.32 Aligned_cols=22 Identities=9% Similarity=0.114 Sum_probs=18.9
Q ss_pred hcCCCCHHHHHHHHHHHHHCCh
Q 044269 58 MTNWRYLDSERRFQHGLEACGV 79 (129)
Q Consensus 58 ~tnfd~~es~~rF~r~Lk~~GV 79 (129)
.-||.+.+++.|..+.|+.+||
T Consensus 176 T~D~~D~edV~RV~~~LreLGl 197 (251)
T 1ztp_A 176 TDDFTDRLGVLEADSAIRAAGI 197 (251)
T ss_dssp ESCTTCHHHHHHHHHHHHHTTC
T ss_pred CCCcCCHHHHHHHHHHHHHcCC
Confidence 4689999999999888888776
No 171
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=23.26 E-value=31 Score=21.88 Aligned_cols=17 Identities=12% Similarity=0.315 Sum_probs=13.9
Q ss_pred HHHHHHcCCCCCCEEEE
Q 044269 80 TKSLMKLGVKEGDTVIV 96 (129)
Q Consensus 80 ~~aLkkaGakeGDtV~I 96 (129)
.+.|.+.|+++|++|.+
T Consensus 70 ~~tL~~~gi~~g~~i~l 86 (91)
T 3v6c_B 70 GRTLSDYNIQKESTLHL 86 (91)
T ss_dssp TCBTGGGTCCTTCEEEE
T ss_pred cCcHHHCCCCCCCEEEE
Confidence 34688899999999875
No 172
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=23.25 E-value=32 Score=25.34 Aligned_cols=21 Identities=24% Similarity=0.370 Sum_probs=15.9
Q ss_pred HCChHHHHHHcCCC-CCCEEEE
Q 044269 76 ACGVTKSLMKLGVK-EGDTVIV 96 (129)
Q Consensus 76 ~~GV~~aLkkaGak-eGDtV~I 96 (129)
.+|+.++|+++|++ ++|.-.|
T Consensus 207 A~g~~~al~~~G~~vP~di~vv 228 (289)
T 2fep_A 207 ALGIIHAAQDQGLSIPEDLDII 228 (289)
T ss_dssp HHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHHHHHcCCCCCCCeEEE
Confidence 45889999999998 4565444
No 173
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2
Probab=23.25 E-value=15 Score=26.00 Aligned_cols=13 Identities=23% Similarity=0.562 Sum_probs=11.4
Q ss_pred cCCCCCCEEEEcC
Q 044269 86 LGVKEGDTVIVGD 98 (129)
Q Consensus 86 aGakeGDtV~IGd 98 (129)
.=+++||+|.||+
T Consensus 98 ~~L~~GD~I~iG~ 110 (145)
T 2csw_A 98 YSIHQGDYIQLGV 110 (145)
T ss_dssp EECCSSCCEEESC
T ss_pred EECCCCCEEEECC
Confidence 4588999999998
No 174
>1zq1_A Glutamyl-tRNA(Gln) amidotransferase subunit D; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} SCOP: b.38.3.1 c.88.1.1
Probab=23.24 E-value=54 Score=27.86 Aligned_cols=20 Identities=25% Similarity=0.283 Sum_probs=16.5
Q ss_pred ChHHHHHHcCCCCCCEEEEc
Q 044269 78 GVTKSLMKLGVKEGDTVIVG 97 (129)
Q Consensus 78 GV~~aLkkaGakeGDtV~IG 97 (129)
-+-+.|+++|+..||.|+|-
T Consensus 2 ~~~~~~~~~~~~~gd~v~~~ 21 (438)
T 1zq1_A 2 RVDEFLKERNINVGDFVRIT 21 (438)
T ss_dssp CHHHHHHHTTCCTTCEEEEE
T ss_pred chHHHHHhcCCCCCCEEEEE
Confidence 34577889999999999973
No 175
>2lx9_A Ferrous iron transport protein A; FEOA; NMR {Escherichia coli}
Probab=23.16 E-value=64 Score=20.74 Aligned_cols=16 Identities=31% Similarity=0.571 Sum_probs=12.8
Q ss_pred HHHHHcCCCCCCEEEE
Q 044269 81 KSLMKLGVKEGDTVIV 96 (129)
Q Consensus 81 ~aLkkaGakeGDtV~I 96 (129)
+.|.++|+.+|..|.+
T Consensus 24 rrL~~mGl~pG~~V~V 39 (83)
T 2lx9_A 24 QKLLSLGMLPGSSFNV 39 (83)
T ss_dssp HHHHHSSCCSSSEEEE
T ss_pred HHHHHCCCCCCCEEEE
Confidence 3466778999999987
No 176
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=23.13 E-value=33 Score=20.88 Aligned_cols=16 Identities=31% Similarity=0.328 Sum_probs=13.0
Q ss_pred HHHHHcCCCCCCEEEE
Q 044269 81 KSLMKLGVKEGDTVIV 96 (129)
Q Consensus 81 ~aLkkaGakeGDtV~I 96 (129)
..|.+.|+++|++|.+
T Consensus 58 ~tL~~~~i~~~~~l~l 73 (79)
T 3phx_B 58 LPLGEYGLKPLSTVFM 73 (79)
T ss_dssp SBGGGGTCCTTCEEEE
T ss_pred CcHHHCCCCCCCEEEE
Confidence 4577889999999875
No 177
>1ti6_A Pyrogallol hydroxytransferase large subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.52.2.2 c.81.1.1 PDB: 1ti2_A* 1ti4_A* 1vld_M* 1vle_M* 1vlf_M*
Probab=23.11 E-value=38 Score=30.29 Aligned_cols=16 Identities=25% Similarity=0.360 Sum_probs=13.6
Q ss_pred HHHHHcCCCCCCEEEE
Q 044269 81 KSLMKLGVKEGDTVIV 96 (129)
Q Consensus 81 ~aLkkaGakeGDtV~I 96 (129)
+--++.||++||.|+|
T Consensus 777 ~dA~~lGI~dGD~V~V 792 (875)
T 1ti6_A 777 IDAEARGIKNGDLIRA 792 (875)
T ss_dssp HHHHHTTCCTTCEEEE
T ss_pred HHHHHhCCCCCCEEEE
Confidence 4457889999999999
No 178
>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A
Probab=23.08 E-value=37 Score=21.62 Aligned_cols=19 Identities=26% Similarity=0.408 Sum_probs=13.6
Q ss_pred HHHcCCCCCCEE-EEcCEEE
Q 044269 83 LMKLGVKEGDTV-IVGDMEM 101 (129)
Q Consensus 83 LkkaGakeGDtV-~IGd~EF 101 (129)
-.++|++.||.| .|++..+
T Consensus 58 A~~aGl~~GD~I~~ing~~v 77 (104)
T 3sfj_A 58 AEIAGLQIGDKIMQVNGWDM 77 (104)
T ss_dssp HHHHTCCTTCEEEEETTEEC
T ss_pred HHHcCCCCCCEEEEECCEEC
Confidence 346899999986 4566554
No 179
>1xr4_A Putative citrate lyase alpha chain/citrate-ACP TR; the midwest center for structural genomics, MCSG, structural genomics; 2.37A {Salmonella typhimurium} SCOP: c.124.1.2 c.124.1.2
Probab=23.05 E-value=55 Score=28.10 Aligned_cols=21 Identities=19% Similarity=0.400 Sum_probs=19.3
Q ss_pred ChHHHHHHcCCCCCCEEEEcC
Q 044269 78 GVTKSLMKLGVKEGDTVIVGD 98 (129)
Q Consensus 78 GV~~aLkkaGakeGDtV~IGd 98 (129)
-.++|+...||++||+|.++.
T Consensus 48 SaeEAv~~~~IkdG~tV~~gg 68 (509)
T 1xr4_A 48 SLEEAIRRSGLKNGMTISFHH 68 (509)
T ss_dssp SHHHHHHHTTCCTTCEEEECC
T ss_pred CHHHHhcCCCCCCcCEEEECC
Confidence 688999999999999999985
No 180
>1fr3_A MOP, molybdate/tungstate binding protein; molybdate homeostasis, metal binding protein; 1.50A {Sporomusa ovata} SCOP: b.40.6.1
Probab=23.02 E-value=57 Score=18.97 Aligned_cols=13 Identities=31% Similarity=0.457 Sum_probs=10.3
Q ss_pred HHcCCCCCCEEEE
Q 044269 84 MKLGVKEGDTVIV 96 (129)
Q Consensus 84 kkaGakeGDtV~I 96 (129)
.+.|+++|+.|.+
T Consensus 44 ~~l~L~~G~~V~~ 56 (67)
T 1fr3_A 44 ADLDLVPGDKVTA 56 (67)
T ss_dssp HHHTCCTTCEEEE
T ss_pred HhCCCCCCCEEEE
Confidence 4459999999985
No 181
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1
Probab=23.01 E-value=33 Score=21.99 Aligned_cols=19 Identities=21% Similarity=0.408 Sum_probs=13.8
Q ss_pred HHHcCCCCCCEEE-EcCEEE
Q 044269 83 LMKLGVKEGDTVI-VGDMEM 101 (129)
Q Consensus 83 LkkaGakeGDtV~-IGd~EF 101 (129)
-.++|++.||.|. |++..+
T Consensus 49 A~~aGL~~GD~I~~vng~~v 68 (100)
T 1whd_A 49 AERAGLQQLDTVLQLNERPV 68 (100)
T ss_dssp HHHHTCCSSCEEEEETTEEC
T ss_pred HHHcCCCCCCEEEEECCEEC
Confidence 3457999999874 666654
No 182
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=22.92 E-value=33 Score=25.43 Aligned_cols=23 Identities=9% Similarity=0.010 Sum_probs=16.7
Q ss_pred HHCChHHHHHHcCCCCC-CEEEEc
Q 044269 75 EACGVTKSLMKLGVKEG-DTVIVG 97 (129)
Q Consensus 75 k~~GV~~aLkkaGakeG-DtV~IG 97 (129)
-.+|+.++|+++|++-+ |.-.||
T Consensus 213 ~A~g~~~al~~~g~~vP~di~vig 236 (305)
T 3huu_A 213 LNMQLLNVLYEYQLRIPEDIQTAT 236 (305)
T ss_dssp HHHHHHHHHHHTTCCTTTTCEEEE
T ss_pred HHHHHHHHHHHcCCCCCcceEEEE
Confidence 34589999999999954 544443
No 183
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=22.77 E-value=34 Score=24.91 Aligned_cols=21 Identities=38% Similarity=0.400 Sum_probs=15.6
Q ss_pred CChHHHHHHcCCCCC-CEEEEc
Q 044269 77 CGVTKSLMKLGVKEG-DTVIVG 97 (129)
Q Consensus 77 ~GV~~aLkkaGakeG-DtV~IG 97 (129)
+|+.++|+++|++-+ |...||
T Consensus 205 ~g~~~al~~~g~~vP~di~vig 226 (292)
T 3k4h_A 205 LGVLSALSKKGFVVPKDVSIVS 226 (292)
T ss_dssp HHHHHHHHHTTCCTTTTCEEEE
T ss_pred HHHHHHHHHhCCCCCCeEEEEE
Confidence 489999999999854 544443
No 184
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*
Probab=22.74 E-value=40 Score=21.82 Aligned_cols=18 Identities=22% Similarity=0.431 Sum_probs=13.2
Q ss_pred HHcCCCCCCEE-EEcCEEE
Q 044269 84 MKLGVKEGDTV-IVGDMEM 101 (129)
Q Consensus 84 kkaGakeGDtV-~IGd~EF 101 (129)
.++|++.||.| .|++..+
T Consensus 59 ~~aGl~~GD~I~~vng~~v 77 (109)
T 1q3o_A 59 WRAGLRMGDFLIEVNGQNV 77 (109)
T ss_dssp HHTTCCTTCEEEEETTEEC
T ss_pred HHcCCCCCCEEEEECCEEC
Confidence 35799999987 4666554
No 185
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=22.70 E-value=55 Score=26.55 Aligned_cols=16 Identities=38% Similarity=0.590 Sum_probs=12.4
Q ss_pred HHHHcCCCCCCEEEEc
Q 044269 82 SLMKLGVKEGDTVIVG 97 (129)
Q Consensus 82 aLkkaGakeGDtV~IG 97 (129)
.|+++|++.||.|-|.
T Consensus 65 ~L~~~Gv~~gd~V~i~ 80 (576)
T 3gqw_A 65 RLLSLNLKKGDRVALI 80 (576)
T ss_dssp HHHHTCCCTTCEEEEE
T ss_pred HHHHcCCCCCCEEEEE
Confidence 4455689999999874
No 186
>3dnp_A Stress response protein YHAX; structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, unknown function; HET: MSE; 1.85A {Bacillus subtilis} SCOP: c.108.1.0
Probab=22.66 E-value=31 Score=25.39 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=21.4
Q ss_pred HHCChHHHHHHcCCCCCCEEEEcCE
Q 044269 75 EACGVTKSLMKLGVKEGDTVIVGDM 99 (129)
Q Consensus 75 k~~GV~~aLkkaGakeGDtV~IGd~ 99 (129)
|..||...++..|+...+++.|||-
T Consensus 203 K~~~l~~l~~~lgi~~~~~i~~GD~ 227 (290)
T 3dnp_A 203 KEAGLALVASELGLSMDDVVAIGHQ 227 (290)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEEECS
T ss_pred HHHHHHHHHHHcCCCHHHEEEECCc
Confidence 4456788999999999999999974
No 187
>3e58_A Putative beta-phosphoglucomutase; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.86A {Streptococcus thermophilus lmg 18311}
Probab=22.61 E-value=30 Score=23.19 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=16.2
Q ss_pred hHHHHHHcCCCCCCEEEEcCE
Q 044269 79 VTKSLMKLGVKEGDTVIVGDM 99 (129)
Q Consensus 79 V~~aLkkaGakeGDtV~IGd~ 99 (129)
+..++++.|+.+.+++.|||-
T Consensus 151 ~~~~~~~~~~~~~~~~~iGD~ 171 (214)
T 3e58_A 151 YLTALKQLNVQASRALIIEDS 171 (214)
T ss_dssp HHHHHHHHTCCGGGEEEEECS
T ss_pred HHHHHHHcCCChHHeEEEecc
Confidence 345677778888899999865
No 188
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=22.57 E-value=35 Score=21.88 Aligned_cols=18 Identities=22% Similarity=0.355 Sum_probs=13.8
Q ss_pred HHcCCCCCCEE-EEcCEEE
Q 044269 84 MKLGVKEGDTV-IVGDMEM 101 (129)
Q Consensus 84 kkaGakeGDtV-~IGd~EF 101 (129)
.++|++.||.| .|++..+
T Consensus 43 ~~aGL~~GD~I~~ing~~v 61 (103)
T 1wf7_A 43 SQAHVRIGDVVLSIDGISA 61 (103)
T ss_dssp HHTTCCTTCBEEEETTEEC
T ss_pred HHcCCCCCCEEEEECCEEC
Confidence 46799999987 5677665
No 189
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.54 E-value=38 Score=21.61 Aligned_cols=19 Identities=21% Similarity=0.414 Sum_probs=14.4
Q ss_pred HHHcCCCCCCEE-EEcCEEE
Q 044269 83 LMKLGVKEGDTV-IVGDMEM 101 (129)
Q Consensus 83 LkkaGakeGDtV-~IGd~EF 101 (129)
-.++|++.||.| .|++..+
T Consensus 49 A~~aGL~~GD~I~~ing~~v 68 (100)
T 2eeh_A 49 AERAGLCVGDKITEVNGLSL 68 (100)
T ss_dssp HHHHTCCSSCEEEEETTEEC
T ss_pred HHHcCCCCCCEEEEECCEEC
Confidence 467899999997 4666655
No 190
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=22.53 E-value=38 Score=21.91 Aligned_cols=19 Identities=26% Similarity=0.513 Sum_probs=14.2
Q ss_pred HHHcCCCCCCEE-EEcCEEE
Q 044269 83 LMKLGVKEGDTV-IVGDMEM 101 (129)
Q Consensus 83 LkkaGakeGDtV-~IGd~EF 101 (129)
-.++|++.||.| .|++..+
T Consensus 59 A~~aGL~~GD~I~~ing~~v 78 (110)
T 1x5q_A 59 AARAGVRVGDKLLEVNGVAL 78 (110)
T ss_dssp HHHHTCCTTCEEEEETTEEC
T ss_pred HHHcCCCCCCEEEEECCEEC
Confidence 456899999986 5677655
No 191
>3dv9_A Beta-phosphoglucomutase; structural genomics, APC60149, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.72A {Bacteroides vulgatus}
Probab=22.52 E-value=30 Score=24.13 Aligned_cols=22 Identities=18% Similarity=0.304 Sum_probs=17.5
Q ss_pred hHHHHHHcCCCCCCEEEEcCEE
Q 044269 79 VTKSLMKLGVKEGDTVIVGDME 100 (129)
Q Consensus 79 V~~aLkkaGakeGDtV~IGd~E 100 (129)
+..++++.|+.+.++|.|||-.
T Consensus 171 ~~~~~~~lg~~~~~~i~vGD~~ 192 (247)
T 3dv9_A 171 YLMALKKGGFKPNEALVIENAP 192 (247)
T ss_dssp HHHHHHHHTCCGGGEEEEECSH
T ss_pred HHHHHHHcCCChhheEEEeCCH
Confidence 5567778889999999999753
No 192
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=22.52 E-value=55 Score=26.87 Aligned_cols=17 Identities=35% Similarity=0.587 Sum_probs=13.4
Q ss_pred HHHHHcCCCCCCEEEEc
Q 044269 81 KSLMKLGVKEGDTVIVG 97 (129)
Q Consensus 81 ~aLkkaGakeGDtV~IG 97 (129)
..|+++|++.||.|-|.
T Consensus 70 ~~L~~~Gv~~gd~V~i~ 86 (544)
T 3o83_A 70 TRLAEKGLGKGDTALVQ 86 (544)
T ss_dssp HHHHHTTCCTTCEEEEC
T ss_pred HHHHHCCCCCCCEEEEE
Confidence 45566799999999885
No 193
>3umc_A Haloacid dehalogenase; HY; 2.15A {Pseudomonas aeruginosa}
Probab=22.46 E-value=30 Score=24.30 Aligned_cols=21 Identities=5% Similarity=0.036 Sum_probs=17.4
Q ss_pred hHHHHHHcCCCCCCEEEEcCE
Q 044269 79 VTKSLMKLGVKEGDTVIVGDM 99 (129)
Q Consensus 79 V~~aLkkaGakeGDtV~IGd~ 99 (129)
+..+|++.|+.+.++|.|||-
T Consensus 179 ~~~~~~~lgi~~~~~~~iGD~ 199 (254)
T 3umc_A 179 YLGACRLLDLPPQEVMLCAAH 199 (254)
T ss_dssp HHHHHHHHTCCGGGEEEEESC
T ss_pred HHHHHHHcCCChHHEEEEcCc
Confidence 456788889999999999975
No 194
>2ah5_A COG0546: predicted phosphatases; MCSG, structural genomics, hydrola haloacid dehalogenase-like, PSI; 1.74A {Streptococcus pneumoniae} SCOP: c.108.1.6
Probab=22.39 E-value=44 Score=23.28 Aligned_cols=21 Identities=19% Similarity=0.447 Sum_probs=15.6
Q ss_pred hHHHHHHcCCCCCCEEEEcCE
Q 044269 79 VTKSLMKLGVKEGDTVIVGDM 99 (129)
Q Consensus 79 V~~aLkkaGakeGDtV~IGd~ 99 (129)
+..++++.|+.+.++|.|||-
T Consensus 143 ~~~~~~~lg~~p~~~~~vgDs 163 (210)
T 2ah5_A 143 IHQALQTHQLAPEQAIIIGDT 163 (210)
T ss_dssp HHHHHHHTTCCGGGEEEEESS
T ss_pred HHHHHHHcCCCcccEEEECCC
Confidence 344566678888899999864
No 195
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=22.30 E-value=40 Score=24.78 Aligned_cols=21 Identities=29% Similarity=0.338 Sum_probs=16.3
Q ss_pred HCChHHHHHHcCCCCCCEEEE
Q 044269 76 ACGVTKSLMKLGVKEGDTVIV 96 (129)
Q Consensus 76 ~~GV~~aLkkaGakeGDtV~I 96 (129)
.+|+.++|+++|++-++.|.|
T Consensus 197 A~g~~~al~~~g~~vP~di~v 217 (289)
T 3k9c_A 197 ATGVLDLLVRSGRDVPADISV 217 (289)
T ss_dssp HHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHHHHHHHcCCCCCCceEE
Confidence 458999999999996654444
No 196
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*
Probab=22.23 E-value=31 Score=21.53 Aligned_cols=18 Identities=28% Similarity=0.364 Sum_probs=13.4
Q ss_pred HHcCCCCCCEE-EEcCEEE
Q 044269 84 MKLGVKEGDTV-IVGDMEM 101 (129)
Q Consensus 84 kkaGakeGDtV-~IGd~EF 101 (129)
.++|++.||.| .|++..+
T Consensus 43 ~~aGl~~GD~I~~ing~~v 61 (95)
T 3r68_A 43 EAAGLKNNDLVVAVNGKSV 61 (95)
T ss_dssp HHHTCCTTEEEEEETTEEC
T ss_pred HHCCCCCCCEEEEECCEEC
Confidence 46899999976 5666654
No 197
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=22.22 E-value=37 Score=24.61 Aligned_cols=22 Identities=36% Similarity=0.406 Sum_probs=15.9
Q ss_pred HCChHHHHHHcCCCCC-CEEEEc
Q 044269 76 ACGVTKSLMKLGVKEG-DTVIVG 97 (129)
Q Consensus 76 ~~GV~~aLkkaGakeG-DtV~IG 97 (129)
.+|+.++|+++|++-+ |.-.||
T Consensus 213 a~g~~~al~~~g~~vP~di~vvg 235 (298)
T 3tb6_A 213 ALKVIDMLREMDLKVPEDMSIVG 235 (298)
T ss_dssp HHHHHHHHHHTTCCTTTTCEEEC
T ss_pred HHHHHHHHHHcCCCCCCceEEEe
Confidence 3478899999999955 544443
No 198
>2nap_A Protein (periplasmic nitrate reductase); nitrogenous acceptor, dissimilatory nitrate reductase; HET: MGD MES; 1.90A {Desulfovibrio desulfuricans} SCOP: b.52.2.2 c.81.1.1 PDB: 2jim_A* 2jir_A* 2jip_A* 2v45_A* 2v3v_A* 2jiq_A* 2jio_A*
Probab=22.15 E-value=45 Score=28.89 Aligned_cols=17 Identities=41% Similarity=0.731 Sum_probs=13.8
Q ss_pred HHHHHcCCCCCCEEEEc
Q 044269 81 KSLMKLGVKEGDTVIVG 97 (129)
Q Consensus 81 ~aLkkaGakeGDtV~IG 97 (129)
+-.++.||++||.|+|.
T Consensus 648 ~dA~~lGI~~GD~V~v~ 664 (723)
T 2nap_A 648 EDAARTGIKHGDSVIVE 664 (723)
T ss_dssp HHHHHHTCCTTCEEEEE
T ss_pred HHHHHcCCCCCCEEEEE
Confidence 34578899999999983
No 199
>1tmo_A TMAO reductase, trimethylamine N-oxide reductase; oxidoreductase, oxotransferase, molybdoenzyme, MO-cofactor, molybdenum; HET: 2MD; 2.50A {Shewanella massilia} SCOP: b.52.2.2 c.81.1.1
Probab=22.10 E-value=49 Score=29.23 Aligned_cols=17 Identities=35% Similarity=0.376 Sum_probs=13.9
Q ss_pred HHHHHcCCCCCCEEEEc
Q 044269 81 KSLMKLGVKEGDTVIVG 97 (129)
Q Consensus 81 ~aLkkaGakeGDtV~IG 97 (129)
+--++.||++||.|+|.
T Consensus 714 ~dA~~lGI~dGD~V~V~ 730 (829)
T 1tmo_A 714 VDAKARGIKDGDIVRVF 730 (829)
T ss_dssp HHHHHTTCCTTCEEEEE
T ss_pred HHHHHcCCCCCCEEEEE
Confidence 34478899999999994
No 200
>3kzx_A HAD-superfamily hydrolase, subfamily IA, variant; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 1.90A {Ehrlichia chaffeensis}
Probab=22.07 E-value=59 Score=22.47 Aligned_cols=20 Identities=15% Similarity=0.464 Sum_probs=16.2
Q ss_pred HHHHHHcCCCCC-CEEEEcCE
Q 044269 80 TKSLMKLGVKEG-DTVIVGDM 99 (129)
Q Consensus 80 ~~aLkkaGakeG-DtV~IGd~ 99 (129)
..++++.|+.+. ++|.|||-
T Consensus 166 ~~~~~~lgi~~~~~~v~vGD~ 186 (231)
T 3kzx_A 166 LAALTNINIEPSKEVFFIGDS 186 (231)
T ss_dssp HHHHHHHTCCCSTTEEEEESS
T ss_pred HHHHHHcCCCcccCEEEEcCC
Confidence 466777899998 89999964
No 201
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=21.98 E-value=38 Score=24.49 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=16.9
Q ss_pred HHCChHHHHHHcCCCCC-CEEEEc
Q 044269 75 EACGVTKSLMKLGVKEG-DTVIVG 97 (129)
Q Consensus 75 k~~GV~~aLkkaGakeG-DtV~IG 97 (129)
-.+|+.++|+++|++-+ |.-.||
T Consensus 188 ~a~g~~~al~~~g~~vP~di~vig 211 (277)
T 3e61_A 188 LAINVLGIVQRYHFKVPAEIQIIG 211 (277)
T ss_dssp HHHHHHHHHHHTTCCTTTTCEEEC
T ss_pred HHHHHHHHHHHcCCCCCCceEEEe
Confidence 34689999999999955 544444
No 202
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=21.92 E-value=34 Score=22.63 Aligned_cols=14 Identities=29% Similarity=0.610 Sum_probs=10.6
Q ss_pred HHHcCCCCCCEEEE
Q 044269 83 LMKLGVKEGDTVIV 96 (129)
Q Consensus 83 LkkaGakeGDtV~I 96 (129)
|.+.|+.+||.+.|
T Consensus 67 L~d~~ItnGD~Lei 80 (81)
T 2bps_A 67 LSDCGITNGDRLEI 80 (81)
T ss_dssp TGGGTCCTTCEEEE
T ss_pred EeeCCcCCCCEEEE
Confidence 44668889998876
No 203
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=21.89 E-value=58 Score=26.73 Aligned_cols=17 Identities=41% Similarity=0.423 Sum_probs=12.7
Q ss_pred HHHHHcCCCCCCEEEEc
Q 044269 81 KSLMKLGVKEGDTVIVG 97 (129)
Q Consensus 81 ~aLkkaGakeGDtV~IG 97 (129)
..|+++|++.||.|-|.
T Consensus 62 ~~L~~~Gv~~gd~V~i~ 78 (541)
T 1v25_A 62 GGLRALGVGVGDRVATL 78 (541)
T ss_dssp HHHHHTTCCTTCEEEEE
T ss_pred HHHHHcCCCCCCEEEEE
Confidence 34556688999999874
No 204
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=21.86 E-value=58 Score=26.42 Aligned_cols=17 Identities=24% Similarity=0.468 Sum_probs=13.1
Q ss_pred HHHHHcCCCCCCEEEEc
Q 044269 81 KSLMKLGVKEGDTVIVG 97 (129)
Q Consensus 81 ~aLkkaGakeGDtV~IG 97 (129)
..|+++|++.||.|-|.
T Consensus 63 ~~L~~~Gv~~gd~V~i~ 79 (529)
T 2v7b_A 63 SALRTLGVHPEERILLV 79 (529)
T ss_dssp HHHHHTTCCTTCEEEEE
T ss_pred HHHHHcCCCCCCEEEEE
Confidence 34556789999999874
No 205
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=21.86 E-value=19 Score=23.16 Aligned_cols=16 Identities=38% Similarity=0.455 Sum_probs=12.9
Q ss_pred HHHHcCCCCCCEEEEc
Q 044269 82 SLMKLGVKEGDTVIVG 97 (129)
Q Consensus 82 aLkkaGakeGDtV~IG 97 (129)
-|...|++.||++.+.
T Consensus 63 ~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 63 SLHLLKIKHGDLLFLF 78 (80)
T ss_dssp TTTTTCCCTTCCEEC-
T ss_pred CHHHcCCCCCCEEEEe
Confidence 5778899999999864
No 206
>2d9r_A Conserved hypothetical protein; MCSG, structural genomics, hypothe protein, PSI, protein structure initiative; 2.01A {Porphyromonas gingivalis} SCOP: b.129.2.1
Probab=21.85 E-value=54 Score=22.55 Aligned_cols=20 Identities=30% Similarity=0.617 Sum_probs=13.8
Q ss_pred CChHHHHH-HcCCCCCCEEEE
Q 044269 77 CGVTKSLM-KLGVKEGDTVIV 96 (129)
Q Consensus 77 ~GV~~aLk-kaGakeGDtV~I 96 (129)
++|.++++ +.|++.||+|.+
T Consensus 79 Lpvk~~vRka~g~~~GD~V~V 99 (104)
T 2d9r_A 79 LGLRQDIRRAIGKQPGDSVYV 99 (104)
T ss_dssp EEECHHHHHHHTCCTTSEEEE
T ss_pred EEecHHHHHHcCCCCCCEEEE
Confidence 34555544 469999999875
No 207
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A
Probab=21.84 E-value=41 Score=21.27 Aligned_cols=17 Identities=18% Similarity=0.499 Sum_probs=13.1
Q ss_pred HcCCCCCCEE-EEcCEEE
Q 044269 85 KLGVKEGDTV-IVGDMEM 101 (129)
Q Consensus 85 kaGakeGDtV-~IGd~EF 101 (129)
++|++.||.| .|++...
T Consensus 49 ~aGl~~GD~I~~ing~~v 66 (99)
T 3khf_A 49 EAGLRAGDLITHINGESV 66 (99)
T ss_dssp HHTCCTTCEEEEETTEEC
T ss_pred HcCCCCCCEEEEECCEEC
Confidence 6799999986 5676654
No 208
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=21.84 E-value=59 Score=26.29 Aligned_cols=17 Identities=24% Similarity=0.212 Sum_probs=12.9
Q ss_pred HHHHHcCCCCCCEEEEc
Q 044269 81 KSLMKLGVKEGDTVIVG 97 (129)
Q Consensus 81 ~aLkkaGakeGDtV~IG 97 (129)
..|+++|++.||.|-|.
T Consensus 44 ~~L~~~Gv~~gd~V~i~ 60 (504)
T 1t5h_X 44 ARLHADGLRPQQRVAVV 60 (504)
T ss_dssp HHHHHTTCCTTCEEEEE
T ss_pred HHHHHcCCCCCCEEEEE
Confidence 34556689999999874
No 209
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=21.83 E-value=37 Score=21.64 Aligned_cols=17 Identities=29% Similarity=0.431 Sum_probs=12.0
Q ss_pred HHcCCCCCCEEE-EcCEE
Q 044269 84 MKLGVKEGDTVI-VGDME 100 (129)
Q Consensus 84 kkaGakeGDtV~-IGd~E 100 (129)
.++|++.||.|. |++..
T Consensus 44 ~~aGl~~GD~I~~ing~~ 61 (102)
T 2d90_A 44 EAAGLKNNDLVVAVNGKS 61 (102)
T ss_dssp TTTTCCTTCEEEEESSCB
T ss_pred HHcCCCCCCEEEEECCEE
Confidence 368999999875 44443
No 210
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=21.78 E-value=37 Score=24.87 Aligned_cols=21 Identities=24% Similarity=0.311 Sum_probs=15.4
Q ss_pred HCChHHHHHHcCCCC-CCEEEE
Q 044269 76 ACGVTKSLMKLGVKE-GDTVIV 96 (129)
Q Consensus 76 ~~GV~~aLkkaGake-GDtV~I 96 (129)
.+|+.++|+++|++. +|.-.|
T Consensus 200 a~g~~~al~~~G~~vP~di~vi 221 (287)
T 3bbl_A 200 AIGAMAAARERGLTIGTDLAII 221 (287)
T ss_dssp HHHHHHHHHHTTCCBTTTBEEE
T ss_pred HHHHHHHHHHcCCCCCCCEEEE
Confidence 457889999999985 554443
No 211
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=21.75 E-value=38 Score=24.80 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=16.4
Q ss_pred HCChHHHHHHcCCCC-CCEEEEc
Q 044269 76 ACGVTKSLMKLGVKE-GDTVIVG 97 (129)
Q Consensus 76 ~~GV~~aLkkaGake-GDtV~IG 97 (129)
.+|+.++|+++|++. +|.-.||
T Consensus 196 A~g~~~al~~~g~~vP~di~vvg 218 (285)
T 3c3k_A 196 AAGAIQALTESGLSIPQDVAVVG 218 (285)
T ss_dssp HHHHHHHHHHTTCCTTTTCEEEC
T ss_pred HHHHHHHHHHcCCCCCCceEEEE
Confidence 467889999999984 5655544
No 212
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=21.72 E-value=23 Score=26.31 Aligned_cols=20 Identities=30% Similarity=0.544 Sum_probs=16.3
Q ss_pred CChHHHHHHcCCCCCCEEEEc
Q 044269 77 CGVTKSLMKLGVKEGDTVIVG 97 (129)
Q Consensus 77 ~GV~~aLkkaGakeGDtV~IG 97 (129)
+|+.++|+++|++ +|...||
T Consensus 201 ~g~~~al~~~G~~-~di~vig 220 (313)
T 3m9w_A 201 GGAIQALSAQGLS-GKVAISG 220 (313)
T ss_dssp HHHHHHHHTTTCT-TTSEECC
T ss_pred HHHHHHHHHcCCC-CCcEEEe
Confidence 4788999999999 7766665
No 213
>3ed5_A YFNB; APC60080, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.72A {Bacillus subtilis} PDB: 3i76_A
Probab=21.70 E-value=32 Score=23.71 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=17.3
Q ss_pred hHHHHHHcC-CCCCCEEEEcCEE
Q 044269 79 VTKSLMKLG-VKEGDTVIVGDME 100 (129)
Q Consensus 79 V~~aLkkaG-akeGDtV~IGd~E 100 (129)
+..++++.| +.+.++|.|||-.
T Consensus 164 ~~~~~~~~g~~~~~~~i~vGD~~ 186 (238)
T 3ed5_A 164 FNYVFERIPQFSAEHTLIIGDSL 186 (238)
T ss_dssp HHHHHHTSTTCCGGGEEEEESCT
T ss_pred HHHHHHHcCCCChhHeEEECCCc
Confidence 445777788 8999999999763
No 214
>2ivy_A Hypothetical protein SSO1404; structural genomics, unknown function, CAS, RNAI, crispr; 1.4A {Sulfolobus solfataricus} SCOP: d.58.58.1 PDB: 2i8e_A
Probab=21.69 E-value=1.1e+02 Score=20.51 Aligned_cols=42 Identities=17% Similarity=0.141 Sum_probs=30.2
Q ss_pred hcCCCCHHHHHHHHHHHHHCC--------------------hHHHHHHcC------CCCCCEEEEcCE
Q 044269 58 MTNWRYLDSERRFQHGLEACG--------------------VTKSLMKLG------VKEGDTVIVGDM 99 (129)
Q Consensus 58 ~tnfd~~es~~rF~r~Lk~~G--------------------V~~aLkkaG------akeGDtV~IGd~ 99 (129)
.+|..+....++|.+.|++.| +...|++.- -.+.|.|+|..+
T Consensus 8 ~YDI~~~kr~~kv~k~L~~yGl~rvQ~SVFe~~lt~~~~~~l~~~L~~~i~~~~~~d~~~Dsv~iy~l 75 (101)
T 2ivy_A 8 FYDITDDNLRNRVAEFLKKKGLDRIQYSVFMGDLNSSRLKDVEAGLKIIGNRKKLQEDERFFILIVPI 75 (101)
T ss_dssp EEEECCHHHHHHHHHHHHHTTCEEEETTEEEEEECHHHHHHHHHHHHHHTCSCCCSTTCCEEEEEEEE
T ss_pred EEeCCChHHHHHHHHHHHHhCChhccccEEEEEcCHHHHHHHHHHHHHHhhhhcCCCCCCCEEEEEEe
Confidence 466667788899999999999 234455544 357899998754
No 215
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=21.68 E-value=59 Score=26.68 Aligned_cols=17 Identities=29% Similarity=0.505 Sum_probs=13.1
Q ss_pred HHHHHcCCCCCCEEEEc
Q 044269 81 KSLMKLGVKEGDTVIVG 97 (129)
Q Consensus 81 ~aLkkaGakeGDtV~IG 97 (129)
..|.++|++.||.|-|.
T Consensus 67 ~~L~~~Gv~~gd~V~i~ 83 (549)
T 3g7s_A 67 SGISRKGVRKGEHVGVC 83 (549)
T ss_dssp HHHHHTTCCTTCEEEEE
T ss_pred HHHHHcCCCCCCEEEEE
Confidence 34566789999999874
No 216
>2pib_A Phosphorylated carbohydrates phosphatase TM_1254; 3D-structure, structural genomics, NPPSFA; HET: MSE GOL; 1.73A {Thermotoga maritima MSB8} PDB: 3kbb_A*
Probab=21.68 E-value=32 Score=23.08 Aligned_cols=21 Identities=24% Similarity=0.218 Sum_probs=16.8
Q ss_pred hHHHHHHcCCCCCCEEEEcCE
Q 044269 79 VTKSLMKLGVKEGDTVIVGDM 99 (129)
Q Consensus 79 V~~aLkkaGakeGDtV~IGd~ 99 (129)
+..++++.|+.+.+++.|||-
T Consensus 146 ~~~~~~~~~~~~~~~i~iGD~ 166 (216)
T 2pib_A 146 YLLVLERLNVVPEKVVVFEDS 166 (216)
T ss_dssp HHHHHHHHTCCGGGEEEEECS
T ss_pred HHHHHHHcCCCCceEEEEeCc
Confidence 345777778999999999975
No 217
>1sgl_A Trichomaglin; S-like ribonuclease, X-RAY sequence, MASS SPEC analysis, hydrolase; 2.20A {Trichosanthes lepiniana} SCOP: d.124.1.1
Probab=21.68 E-value=53 Score=24.36 Aligned_cols=32 Identities=19% Similarity=0.192 Sum_probs=24.5
Q ss_pred HHHHHHHHHH---HHCChHHHHHHcCCCC--CCEEEE
Q 044269 65 DSERRFQHGL---EACGVTKSLMKLGVKE--GDTVIV 96 (129)
Q Consensus 65 es~~rF~r~L---k~~GV~~aLkkaGake--GDtV~I 96 (129)
+...||+..| ++..+.+.|+++||.+ |.++.+
T Consensus 115 ~~~~YF~~a~~L~~~~~l~~~L~~~gI~P~~g~~yt~ 151 (209)
T 1sgl_A 115 GEWNYFKKTLKLFMKYNVDKALEDAGIVASNSKMYDL 151 (209)
T ss_dssp SHHHHHHHHHHHHHHTCHHHHHHHHTCCCCSSCEEEH
T ss_pred cHHHHHHHHHHHHHHcChHHHHHHCCCcCCCCccccH
Confidence 4567777654 6789999999999998 556554
No 218
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=21.68 E-value=59 Score=26.58 Aligned_cols=16 Identities=31% Similarity=0.721 Sum_probs=12.6
Q ss_pred HHHHcCCCCCCEEEEc
Q 044269 82 SLMKLGVKEGDTVIVG 97 (129)
Q Consensus 82 aLkkaGakeGDtV~IG 97 (129)
.|+++|++.||.|-|.
T Consensus 65 ~L~~~Gv~~gd~V~i~ 80 (536)
T 3ni2_A 65 GLNKIGIQQGDVIMLF 80 (536)
T ss_dssp HHHHTTCCTTCEEEEE
T ss_pred HHHHcCCCCCCEEEEE
Confidence 4556789999999874
No 219
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=21.67 E-value=37 Score=23.18 Aligned_cols=16 Identities=31% Similarity=0.515 Sum_probs=13.7
Q ss_pred HHHHHcCCCCCCEEEE
Q 044269 81 KSLMKLGVKEGDTVIV 96 (129)
Q Consensus 81 ~aLkkaGakeGDtV~I 96 (129)
+.|.+.||++|++|.+
T Consensus 77 ~tL~dygI~~g~~l~l 92 (105)
T 1v2y_A 77 KKLRDYGIRNRDEVSF 92 (105)
T ss_dssp SBHHHHTCCSSEEEEE
T ss_pred CCHHHcCCCCCCEEEE
Confidence 4799999999999863
No 220
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=21.51 E-value=36 Score=26.09 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=16.1
Q ss_pred HCChHHHHHHcCCCCC-CEEEEc
Q 044269 76 ACGVTKSLMKLGVKEG-DTVIVG 97 (129)
Q Consensus 76 ~~GV~~aLkkaGakeG-DtV~IG 97 (129)
.+|+.++|+++|++-+ |.-.||
T Consensus 280 A~g~~~al~~~G~~vP~disvig 302 (366)
T 3h5t_A 280 AFGVLEYLKSVGKSAPADLSLTG 302 (366)
T ss_dssp HHHHHHHHHHTTCCTTTTCEEEE
T ss_pred HHHHHHHHHHcCCCCCCceEEEE
Confidence 3489999999999954 544443
No 221
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=21.49 E-value=51 Score=27.99 Aligned_cols=19 Identities=37% Similarity=0.726 Sum_probs=14.7
Q ss_pred hHHHHHHcCCCCCCEEEEc
Q 044269 79 VTKSLMKLGVKEGDTVIVG 97 (129)
Q Consensus 79 V~~aLkkaGakeGDtV~IG 97 (129)
+-..|+++|++.||.|-|.
T Consensus 120 lA~~L~~~Gv~~Gd~V~i~ 138 (652)
T 1pg4_A 120 FANTLLDLGIKKGDVVAIY 138 (652)
T ss_dssp HHHHHHHHTCCTTCEEEEE
T ss_pred HHHHHHHcCCCCCCEEEEE
Confidence 3456667789999999875
No 222
>3dao_A Putative phosphatse; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE 1PE CIT; 1.80A {Eubacterium rectale}
Probab=21.45 E-value=33 Score=25.50 Aligned_cols=22 Identities=9% Similarity=0.219 Sum_probs=19.2
Q ss_pred ChHHHHHHcCCCCCCEEEEcCE
Q 044269 78 GVTKSLMKLGVKEGDTVIVGDM 99 (129)
Q Consensus 78 GV~~aLkkaGakeGDtV~IGd~ 99 (129)
||...++..|+...+++.|||-
T Consensus 215 ~l~~l~~~lgi~~~e~ia~GD~ 236 (283)
T 3dao_A 215 ALSYLIDRFDLLPDEVCCFGDN 236 (283)
T ss_dssp HHHHHHHHTTCCGGGEEEEECS
T ss_pred HHHHHHHHhCCCHHHEEEECCC
Confidence 6777789999999999999983
No 223
>1b56_A Fatty acid binding protein; lipid-binding, fatty acid transport, beta barrel, lipid binding protein; HET: PLM; 2.05A {Homo sapiens} SCOP: b.60.1.2 PDB: 1jjj_A
Probab=21.45 E-value=26 Score=24.74 Aligned_cols=20 Identities=30% Similarity=0.473 Sum_probs=17.2
Q ss_pred HHHHHHHCChHHHHHHcCCC
Q 044269 70 FQHGLEACGVTKSLMKLGVK 89 (129)
Q Consensus 70 F~r~Lk~~GV~~aLkkaGak 89 (129)
|...|+++||..++++++..
T Consensus 19 fdeylkalGv~~~~rk~a~~ 38 (135)
T 1b56_A 19 FDEYMKELGVGIALRKMGAM 38 (135)
T ss_dssp HHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHhhc
Confidence 66778999999999999944
No 224
>2c4n_A Protein NAGD; nucleotide phosphatase, HAD superfamily, UMP phosphatase, carbohydrate metabolism, hydrolase; 1.8A {Escherichia coli} SCOP: c.108.1.14
Probab=21.44 E-value=33 Score=23.72 Aligned_cols=22 Identities=36% Similarity=0.472 Sum_probs=18.9
Q ss_pred ChHHHHHHcCCCCCCEEEEcCE
Q 044269 78 GVTKSLMKLGVKEGDTVIVGDM 99 (129)
Q Consensus 78 GV~~aLkkaGakeGDtV~IGd~ 99 (129)
++..++++.|+.+.+++.|||-
T Consensus 181 ~~~~~~~~lgi~~~~~i~iGD~ 202 (250)
T 2c4n_A 181 IIRAALNKMQAHSEETVIVGDN 202 (250)
T ss_dssp HHHHHHHHHTCCGGGEEEEESC
T ss_pred HHHHHHHHcCCCcceEEEECCC
Confidence 4667788889999999999986
No 225
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=21.43 E-value=33 Score=24.89 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=16.0
Q ss_pred HCChHHHHHHcCCCCC-CEEEEc
Q 044269 76 ACGVTKSLMKLGVKEG-DTVIVG 97 (129)
Q Consensus 76 ~~GV~~aLkkaGakeG-DtV~IG 97 (129)
.+|+.++|+++|++-+ |...||
T Consensus 188 a~g~~~al~~~g~~vP~di~vvg 210 (280)
T 3gyb_A 188 AIGALGAARELGLRVPEDLSIIG 210 (280)
T ss_dssp HHHHHHHHHHHTCCTTTTCEEEE
T ss_pred HHHHHHHHHHcCCCCCCeeEEEE
Confidence 4588999999999854 544443
No 226
>2fdr_A Conserved hypothetical protein; SAD, structural genomics, agrobacter tumefaciens, HAD-superfamily hydrolase; 2.00A {Agrobacterium tumefaciens str} SCOP: c.108.1.6
Probab=21.42 E-value=33 Score=23.59 Aligned_cols=57 Identities=14% Similarity=0.055 Sum_probs=33.1
Q ss_pred eEEEEcc---hHHHHHHhcCCCCHH-HHHHHHHHHHH-------CChHHHHHHcCCCCCCEEEEcCEE
Q 044269 44 TWNVVGA---GLQRFVQMTNWRYLD-SERRFQHGLEA-------CGVTKSLMKLGVKEGDTVIVGDME 100 (129)
Q Consensus 44 ~f~V~G~---~IEr~v~~tnfd~~e-s~~rF~r~Lk~-------~GV~~aLkkaGakeGDtV~IGd~E 100 (129)
.+.+++. .++.+++..++...- ........... .++..++++.|+.+.++|.|||-.
T Consensus 103 ~~i~s~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~kpk~~~~~~~~~~l~~~~~~~i~iGD~~ 170 (229)
T 2fdr_A 103 RCICSNSSSHRLDMMLTKVGLKPYFAPHIYSAKDLGADRVKPKPDIFLHGAAQFGVSPDRVVVVEDSV 170 (229)
T ss_dssp EEEEESSCHHHHHHHHHHTTCGGGTTTCEEEHHHHCTTCCTTSSHHHHHHHHHHTCCGGGEEEEESSH
T ss_pred EEEEECCChhHHHHHHHhCChHHhccceEEeccccccCCCCcCHHHHHHHHHHcCCChhHeEEEcCCH
Confidence 5666653 456667776654321 11111111111 246778888899999999999643
No 227
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=21.40 E-value=60 Score=26.33 Aligned_cols=17 Identities=29% Similarity=0.464 Sum_probs=13.0
Q ss_pred HHHHHcCCCCCCEEEEc
Q 044269 81 KSLMKLGVKEGDTVIVG 97 (129)
Q Consensus 81 ~aLkkaGakeGDtV~IG 97 (129)
..|.++|++.||.|-|.
T Consensus 43 ~~L~~~Gv~~gd~V~i~ 59 (503)
T 4fuq_A 43 NVLVARGLQVGDRVAAQ 59 (503)
T ss_dssp HHHHHTTCCTTCEEEEE
T ss_pred HHHHHcCCCCCCEEEEE
Confidence 34566789999999874
No 228
>1o8v_A Fatty acid binding protein homolog; lipid binding protein, hydatid disease, fatty-acid transport; HET: PLM; 1.60A {Echinococcus granulosus} SCOP: b.60.1.2
Probab=21.35 E-value=26 Score=24.69 Aligned_cols=18 Identities=33% Similarity=0.438 Sum_probs=16.3
Q ss_pred HHHHHHHCChHHHHHHcC
Q 044269 70 FQHGLEACGVTKSLMKLG 87 (129)
Q Consensus 70 F~r~Lk~~GV~~aLkkaG 87 (129)
|...|+++||..++++++
T Consensus 17 fdeylkalGv~~~~rk~a 34 (134)
T 1o8v_A 17 FDKIMERLGVDFVTRKMG 34 (134)
T ss_dssp HHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHh
Confidence 677789999999999998
No 229
>2iv2_X Formate dehydrogenase H; oxidoreductase, 4Fe-4S, anaerobic, complete proteome, direct protein sequencing, Fe4S4, iron, iron sulfur cluster; HET: 2MD MGD; 2.27A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1fdi_A* 1fdo_A* 1aa6_A*
Probab=21.32 E-value=47 Score=28.79 Aligned_cols=17 Identities=24% Similarity=0.405 Sum_probs=14.2
Q ss_pred HHHHHcCCCCCCEEEEc
Q 044269 81 KSLMKLGVKEGDTVIVG 97 (129)
Q Consensus 81 ~aLkkaGakeGDtV~IG 97 (129)
+-.++.||++||.|+|.
T Consensus 613 ~dA~~lGI~~Gd~V~v~ 629 (715)
T 2iv2_X 613 EDAKRLGIEDEALVWVH 629 (715)
T ss_dssp HHHHHHTCCTTCEEEEE
T ss_pred HHHHHhCCCCCCEEEEE
Confidence 44578899999999994
No 230
>1zd0_A Hypothetical protein PF0523; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: d.329.1.1
Probab=21.30 E-value=35 Score=25.14 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=17.4
Q ss_pred HHHHHCChHHHHHHcCCCCCCEE
Q 044269 72 HGLEACGVTKSLMKLGVKEGDTV 94 (129)
Q Consensus 72 r~Lk~~GV~~aLkkaGakeGDtV 94 (129)
+.==..-+.+||++.|+++|+.+
T Consensus 81 ~lSgtrQIs~Alk~~Gi~~g~n~ 103 (150)
T 1zd0_A 81 RLSGNRQIKEAIKKVGAKEGENY 103 (150)
T ss_dssp HHHTCSSHHHHHHHHBCCSEEEE
T ss_pred HHcccchHHHHHHHhCCCCCCce
Confidence 33345678999999999999543
No 231
>1h0h_A Formate dehydrogenase (large subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: b.52.2.2 c.81.1.1
Probab=21.26 E-value=39 Score=30.91 Aligned_cols=15 Identities=40% Similarity=0.612 Sum_probs=12.8
Q ss_pred HHHcCCCCCCEEEEc
Q 044269 83 LMKLGVKEGDTVIVG 97 (129)
Q Consensus 83 LkkaGakeGDtV~IG 97 (129)
-++.||++||.|+|.
T Consensus 889 A~~lGI~~GD~V~V~ 903 (977)
T 1h0h_A 889 ATLRGIKNGDKVILE 903 (977)
T ss_dssp HHHHTCCTTCEEEEE
T ss_pred HHHcCCCCCCEEEEE
Confidence 467799999999983
No 232
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=21.24 E-value=31 Score=27.80 Aligned_cols=42 Identities=19% Similarity=0.188 Sum_probs=32.3
Q ss_pred HHHHHHhcCCC---------CHHHHHHHHHHHHHCChHHHHHHcCCCCCCE
Q 044269 52 LQRFVQMTNWR---------YLDSERRFQHGLEACGVTKSLMKLGVKEGDT 93 (129)
Q Consensus 52 IEr~v~~tnfd---------~~es~~rF~r~Lk~~GV~~aLkkaGakeGDt 93 (129)
..++.+..... ..+.+.++.+.++++|+-..|.+.|+.+.|.
T Consensus 304 ~~~la~~lg~~~~~~~~~~~~~~~~~~i~~l~~~~glp~~l~~~gi~~~~~ 354 (387)
T 3bfj_A 304 FADIAELMGENITGLSTLDAAEKAIAAITRLSMDIGIPQHLRDLGVKETDF 354 (387)
T ss_dssp HHHHHHHTTCCCTTCCHHHHHHHHHHHHHHHHHHTTCCCCGGGGTCCGGGH
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHH
Confidence 45566666554 2457789999999999999999999987653
No 233
>3rrl_A Succinyl-COA:3-ketoacid-coenzyme A transferase SU; MCSG,PSI-biology, structural genomics, midwest center for ST genomics; 2.29A {Helicobacter pylori}
Probab=21.24 E-value=45 Score=25.78 Aligned_cols=21 Identities=38% Similarity=0.746 Sum_probs=16.1
Q ss_pred CChHHHHHHcCCCCCCEEEEcCE
Q 044269 77 CGVTKSLMKLGVKEGDTVIVGDM 99 (129)
Q Consensus 77 ~GV~~aLkkaGakeGDtV~IGd~ 99 (129)
+-..+|+.. |++||||.+|++
T Consensus 9 ~sa~eAv~~--IkdG~tV~~gGf 29 (235)
T 3rrl_A 9 TDLDKALSA--LKDGDTILVGGF 29 (235)
T ss_dssp SSTHHHHTT--CCTTCEEEECCB
T ss_pred CCHHHHHhh--CCCCCEEEECCc
Confidence 345666643 999999999985
No 234
>3qxg_A Inorganic pyrophosphatase; hydrolase, magnesium binding site, NEW YORK research center for structural genomics; HET: TLA; 1.24A {Bacteroides thetaiotaomicron} PDB: 3qu2_A* 3qx7_A 3quq_A* 3r9k_A 3qut_A 3qu9_A* 3qu7_A 3qu5_A 3qyp_A 3quc_A 3qub_A 3qu4_A
Probab=21.14 E-value=48 Score=23.32 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=17.3
Q ss_pred hHHHHHHcCCCCCCEEEEcCEE
Q 044269 79 VTKSLMKLGVKEGDTVIVGDME 100 (129)
Q Consensus 79 V~~aLkkaGakeGDtV~IGd~E 100 (129)
+..++++.|+.+.++|.|||-.
T Consensus 172 ~~~~~~~lg~~~~~~i~vGD~~ 193 (243)
T 3qxg_A 172 YLMALKKGGLKADEAVVIENAP 193 (243)
T ss_dssp HHHHHHHTTCCGGGEEEEECSH
T ss_pred HHHHHHHcCCCHHHeEEEeCCH
Confidence 4457777889999999999753
No 235
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=21.10 E-value=38 Score=24.36 Aligned_cols=22 Identities=23% Similarity=0.143 Sum_probs=16.3
Q ss_pred HCChHHHHHHcCCCC-CCEEEEc
Q 044269 76 ACGVTKSLMKLGVKE-GDTVIVG 97 (129)
Q Consensus 76 ~~GV~~aLkkaGake-GDtV~IG 97 (129)
.+|+.++|+++|++- +|...||
T Consensus 193 a~g~~~al~~~g~~vP~di~vvg 215 (275)
T 3d8u_A 193 AIGALFECHRRVLKVPTDIAIIC 215 (275)
T ss_dssp HHHHHHHHHHTTCCTTTTCEEEE
T ss_pred HHHHHHHHHHcCCCCCCceEEEe
Confidence 458889999999984 5655443
No 236
>3bbn_Q Ribosomal protein S17; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=20.99 E-value=29 Score=25.63 Aligned_cols=12 Identities=33% Similarity=0.396 Sum_probs=10.2
Q ss_pred CCCCCCEEEEcC
Q 044269 87 GVKEGDTVIVGD 98 (129)
Q Consensus 87 GakeGDtV~IGd 98 (129)
-++.||+|.|..
T Consensus 107 ~~kvGD~V~I~E 118 (142)
T 3bbn_Q 107 QFKVGDVVRLEK 118 (142)
T ss_dssp CCCTTEEEEEEE
T ss_pred CCCCCCEEEEEE
Confidence 589999999974
No 237
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Probab=20.98 E-value=43 Score=21.77 Aligned_cols=20 Identities=20% Similarity=0.637 Sum_probs=14.6
Q ss_pred HHHHcCCCCCCEEE-EcCEEE
Q 044269 82 SLMKLGVKEGDTVI-VGDMEM 101 (129)
Q Consensus 82 aLkkaGakeGDtV~-IGd~EF 101 (129)
.-.++|++.||.|. |++...
T Consensus 47 pA~~aGl~~GD~I~~ing~~v 67 (113)
T 2pzd_A 47 PAHRAGLRPGDVILAIGEQMV 67 (113)
T ss_dssp HHHHHTCCTTCEEEEETTEEC
T ss_pred hHHHcCCCCCCEEEEECCEEC
Confidence 34578999999875 666554
No 238
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=20.93 E-value=37 Score=21.80 Aligned_cols=17 Identities=24% Similarity=0.401 Sum_probs=13.4
Q ss_pred HcCCCCCCEE-EEcCEEE
Q 044269 85 KLGVKEGDTV-IVGDMEM 101 (129)
Q Consensus 85 kaGakeGDtV-~IGd~EF 101 (129)
++|++.||.| .|++..+
T Consensus 45 ~aGL~~GD~I~~vng~~v 62 (96)
T 1ujv_A 45 CPGLCEGDLIVEINQQNV 62 (96)
T ss_dssp STTCCSSCEEEEETTEEC
T ss_pred cCCCCCCCEEEEECCEEC
Confidence 5899999987 4677655
No 239
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=20.91 E-value=43 Score=20.36 Aligned_cols=16 Identities=31% Similarity=0.507 Sum_probs=12.5
Q ss_pred HHHHHcCCCCCCEEEE
Q 044269 81 KSLMKLGVKEGDTVIV 96 (129)
Q Consensus 81 ~aLkkaGakeGDtV~I 96 (129)
+-|.+.|+++||+|.+
T Consensus 57 ~tl~~~~i~~~~~i~l 72 (79)
T 2uyz_B 57 HTPKELGMEEEDVIEV 72 (79)
T ss_dssp CCHHHHTCCTTEEEEE
T ss_pred CCHHHcCCCCCCEEEE
Confidence 4566779999999864
No 240
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=20.91 E-value=34 Score=24.87 Aligned_cols=22 Identities=32% Similarity=0.383 Sum_probs=16.3
Q ss_pred HCChHHHHHHcCCCC-CCEEEEc
Q 044269 76 ACGVTKSLMKLGVKE-GDTVIVG 97 (129)
Q Consensus 76 ~~GV~~aLkkaGake-GDtV~IG 97 (129)
.+|+.++|+++|++- +|...||
T Consensus 189 a~g~~~al~~~g~~vP~di~vvg 211 (277)
T 3cs3_A 189 AIGVYKYVAETNYQMGKDIRIIG 211 (277)
T ss_dssp HHHHHHHHTTSSCCBTTTEEEEC
T ss_pred HHHHHHHHHHcCCCCCCcEEEEE
Confidence 357889999999984 5655554
No 241
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=20.87 E-value=40 Score=24.58 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=16.2
Q ss_pred HCChHHHHHHcCCCC-CCEEEEc
Q 044269 76 ACGVTKSLMKLGVKE-GDTVIVG 97 (129)
Q Consensus 76 ~~GV~~aLkkaGake-GDtV~IG 97 (129)
.+|+.++|+++|++- +|.-.||
T Consensus 199 a~g~~~al~~~g~~vP~di~vvg 221 (288)
T 2qu7_A 199 LLGALQAIKESEKEIKKDVIIVG 221 (288)
T ss_dssp HHHHHHHHHHSSCCBTTTBEEEE
T ss_pred HHHHHHHHHHhCCCCCCceEEEE
Confidence 457899999999984 5654443
No 242
>2zkq_q 40S ribosomal protein S11E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 3jyv_Q* 1s1h_Q
Probab=20.86 E-value=41 Score=25.22 Aligned_cols=12 Identities=50% Similarity=0.792 Sum_probs=9.3
Q ss_pred CCCCCCEEEEcC
Q 044269 87 GVKEGDTVIVGD 98 (129)
Q Consensus 87 GakeGDtV~IGd 98 (129)
-++.||+|.|+.
T Consensus 119 ~~kvGD~V~I~E 130 (158)
T 2zkq_q 119 DVQIGDIVTVGE 130 (158)
T ss_dssp CC-CCCEEEEEC
T ss_pred cCCCCCEEEEEE
Confidence 389999999984
No 243
>3mc1_A Predicted phosphatase, HAD family; PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.93A {Clostridium acetobutylicum} SCOP: c.108.1.0
Probab=20.85 E-value=34 Score=23.51 Aligned_cols=22 Identities=27% Similarity=0.622 Sum_probs=16.7
Q ss_pred hHHHHHHcCCCCCCEEEEcCEE
Q 044269 79 VTKSLMKLGVKEGDTVIVGDME 100 (129)
Q Consensus 79 V~~aLkkaGakeGDtV~IGd~E 100 (129)
+..++++.|+.+.++|.|||-.
T Consensus 148 ~~~~~~~lgi~~~~~i~iGD~~ 169 (226)
T 3mc1_A 148 IRYAMESLNIKSDDAIMIGDRE 169 (226)
T ss_dssp HHHHHHHHTCCGGGEEEEESSH
T ss_pred HHHHHHHhCcCcccEEEECCCH
Confidence 3456777788888999999753
No 244
>2wf7_A Beta-PGM, beta-phosphoglucomutase; transition state analogue, haloacid dehalogenase superfamily, isomerase, phosphotransferase; HET: G7P; 1.05A {Lactococcus lactis} PDB: 1o03_A* 1z4n_A* 1z4o_A* 1zol_A 2wf5_A* 2wf6_A* 1o08_A* 2wf8_A* 2wf9_A* 2wfa_A 2whe_A 1lvh_A* 3fm9_A
Probab=20.80 E-value=40 Score=22.93 Aligned_cols=21 Identities=14% Similarity=0.251 Sum_probs=16.7
Q ss_pred hHHHHHHcCCCCCCEEEEcCE
Q 044269 79 VTKSLMKLGVKEGDTVIVGDM 99 (129)
Q Consensus 79 V~~aLkkaGakeGDtV~IGd~ 99 (129)
+..++++.|+.+.++|.|||-
T Consensus 151 ~~~~~~~lgi~~~~~i~iGD~ 171 (221)
T 2wf7_A 151 FIAAAHAVGVAPSESIGLEDS 171 (221)
T ss_dssp HHHHHHHTTCCGGGEEEEESS
T ss_pred HHHHHHHcCCChhHeEEEeCC
Confidence 455777788999999999874
No 245
>4ex6_A ALNB; modified rossman fold, phosphatase, magnesium binding, hydro; 1.25A {Streptomyces SP} PDB: 4ex7_A
Probab=20.74 E-value=34 Score=23.78 Aligned_cols=20 Identities=25% Similarity=0.380 Sum_probs=15.9
Q ss_pred HHHHHHcCCCCCCEEEEcCE
Q 044269 80 TKSLMKLGVKEGDTVIVGDM 99 (129)
Q Consensus 80 ~~aLkkaGakeGDtV~IGd~ 99 (129)
..++++.|+.+.++|.|||-
T Consensus 167 ~~~~~~lg~~~~~~i~vGD~ 186 (237)
T 4ex6_A 167 LHVARGLGIPPERCVVIGDG 186 (237)
T ss_dssp HHHHHHHTCCGGGEEEEESS
T ss_pred HHHHHHcCCCHHHeEEEcCC
Confidence 45677778899999999864
No 246
>2e7z_A Acetylene hydratase AHY; tungstoprotein, DMSO reductase family, iron-sulfur-cluster, lyase; HET: MGD; 1.26A {Pelobacter acetylenicus}
Probab=20.74 E-value=49 Score=28.73 Aligned_cols=17 Identities=29% Similarity=0.478 Sum_probs=13.8
Q ss_pred HHHHHcCCCCCCEEEEc
Q 044269 81 KSLMKLGVKEGDTVIVG 97 (129)
Q Consensus 81 ~aLkkaGakeGDtV~IG 97 (129)
+--++.||++||.|+|.
T Consensus 632 ~dA~~lGI~~Gd~V~v~ 648 (727)
T 2e7z_A 632 KTAQSLGLPSGEWIWVE 648 (727)
T ss_dssp HHHHHHTCCTTSEEEEE
T ss_pred HHHHHcCCCCCCEEEEE
Confidence 34467899999999994
No 247
>1eu1_A Dimethyl sulfoxide reductase; molybdenum, molybdenum cofactor, DMSO, molybdopte oxidoreductase; HET: GLC MGD EPE; 1.30A {Rhodobacter sphaeroides} SCOP: b.52.2.2 c.81.1.1 PDB: 4dmr_A* 1dmr_A* 1e5v_A* 1h5n_A* 2dmr_A* 3dmr_A* 1e61_A* 1e60_A* 1e18_A* 1dms_A*
Probab=20.65 E-value=50 Score=29.00 Aligned_cols=16 Identities=25% Similarity=0.353 Sum_probs=13.4
Q ss_pred HHHHcCCCCCCEEEEc
Q 044269 82 SLMKLGVKEGDTVIVG 97 (129)
Q Consensus 82 aLkkaGakeGDtV~IG 97 (129)
--++.||++||.|+|.
T Consensus 675 dA~~lGI~dGD~V~V~ 690 (780)
T 1eu1_A 675 DAAARGIADGDVLRVF 690 (780)
T ss_dssp HHHTTTCCTTCEEEEE
T ss_pred HHHHcCCCCCCEEEEE
Confidence 3467899999999993
No 248
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=20.61 E-value=64 Score=26.28 Aligned_cols=17 Identities=35% Similarity=0.552 Sum_probs=13.0
Q ss_pred HHHHHcCCCCCCEEEEc
Q 044269 81 KSLMKLGVKEGDTVIVG 97 (129)
Q Consensus 81 ~aLkkaGakeGDtV~IG 97 (129)
..|+++|++.||.|-|.
T Consensus 58 ~~L~~~Gv~~gd~V~i~ 74 (517)
T 3r44_A 58 DVLTALGIAKGDRVALL 74 (517)
T ss_dssp HHHHHTTCCTTCEEEEE
T ss_pred HHHHHcCCCCcCEEEEE
Confidence 34556789999999874
No 249
>3m9l_A Hydrolase, haloacid dehalogenase-like family; HAD family hydrolase, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Pseudomonas fluorescens} PDB: 2ybd_A* 3r09_A*
Probab=20.50 E-value=40 Score=23.11 Aligned_cols=21 Identities=29% Similarity=0.324 Sum_probs=16.8
Q ss_pred hHHHHHHcCCCCCCEEEEcCE
Q 044269 79 VTKSLMKLGVKEGDTVIVGDM 99 (129)
Q Consensus 79 V~~aLkkaGakeGDtV~IGd~ 99 (129)
+..++++.|+.+.++|.|||-
T Consensus 133 ~~~~~~~~g~~~~~~i~iGD~ 153 (205)
T 3m9l_A 133 LLKLAEAWDVSPSRMVMVGDY 153 (205)
T ss_dssp HHHHHHHTTCCGGGEEEEESS
T ss_pred HHHHHHHcCCCHHHEEEECCC
Confidence 456777888899999999974
No 250
>1kqf_A FDH-N alpha, formate dehydrogenase, nitrate-inducible, major S; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1kqg_A*
Probab=20.33 E-value=41 Score=30.86 Aligned_cols=16 Identities=31% Similarity=0.472 Sum_probs=13.3
Q ss_pred HHHHcCCCCCCEEEEc
Q 044269 82 SLMKLGVKEGDTVIVG 97 (129)
Q Consensus 82 aLkkaGakeGDtV~IG 97 (129)
.-++.||++||.|+|.
T Consensus 926 dA~~~GI~~GD~V~V~ 941 (1015)
T 1kqf_A 926 LAAAKGINNGDRVTVS 941 (1015)
T ss_dssp HHHHHTCCTTCEEEEE
T ss_pred HHHHcCCCCCCEEEEE
Confidence 3467799999999984
No 251
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=20.31 E-value=33 Score=25.16 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=16.3
Q ss_pred HCChHHHHHHcCCCCCCEEEEc
Q 044269 76 ACGVTKSLMKLGVKEGDTVIVG 97 (129)
Q Consensus 76 ~~GV~~aLkkaGakeGDtV~IG 97 (129)
.+|+.++|+++|++.+|...||
T Consensus 209 A~g~~~al~~~g~~v~di~vvG 230 (306)
T 8abp_A 209 VLGGVRATEGQGFKAADIIGIG 230 (306)
T ss_dssp HHHHHHHHHHTTCCGGGEEEEE
T ss_pred HHHHHHHHHHcCCCCCceEEEE
Confidence 4588999999999885544443
No 252
>2ayi_A Aminopeptidase T; metallopeptidase, hydrolase; 3.70A {Thermus thermophilus} SCOP: e.60.1.1
Probab=20.30 E-value=1.1e+02 Score=25.39 Aligned_cols=27 Identities=15% Similarity=0.235 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHCChHHHHHHcCCCCCCEEEEc
Q 044269 64 LDSERRFQHGLEACGVTKSLMKLGVKEGDTVIVG 97 (129)
Q Consensus 64 ~es~~rF~r~Lk~~GV~~aLkkaGakeGDtV~IG 97 (129)
++.+.++.+.|-+.|+ ++|+|++|.|-
T Consensus 5 ~~~l~k~A~~~v~~~~-------~lq~Ge~vlI~ 31 (408)
T 2ayi_A 5 KRNLEKLAELAIRVGL-------NLEKGQEVIAT 31 (408)
T ss_dssp HHHHHHHHHHHHHTTT-------CCCTTCEEEEE
T ss_pred HHHHHHHHHHHHHhCc-------CCCCCCEEEEE
Confidence 5788889999988888 99999999984
No 253
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A
Probab=20.24 E-value=58 Score=25.02 Aligned_cols=17 Identities=24% Similarity=0.700 Sum_probs=14.7
Q ss_pred CCCCCEEEEc------CEEEEEE
Q 044269 88 VKEGDTVIVG------DMEMVWH 104 (129)
Q Consensus 88 akeGDtV~IG------d~EFey~ 104 (129)
+++||+|.|| .+||.|.
T Consensus 181 L~~GD~I~fG~s~r~~~~el~f~ 203 (205)
T 3elv_A 181 LRSGDVLTLSEFEEDNDYELIFM 203 (205)
T ss_dssp CCTTCEEESSSSGGGCSEEEEEE
T ss_pred CCCCCEEEECCCCCCCCeEEEEE
Confidence 8999999999 7788775
No 254
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=20.23 E-value=40 Score=24.72 Aligned_cols=21 Identities=24% Similarity=0.507 Sum_probs=15.5
Q ss_pred HCChHHHHHHcCCCC-CCEEEE
Q 044269 76 ACGVTKSLMKLGVKE-GDTVIV 96 (129)
Q Consensus 76 ~~GV~~aLkkaGake-GDtV~I 96 (129)
.+|+.++|+++|++- +|.-.|
T Consensus 201 A~g~~~al~~~G~~vP~di~vv 222 (290)
T 2rgy_A 201 AVSALARFQQLGISVPGDVSVI 222 (290)
T ss_dssp HHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHHHHHcCCCCCCceEEE
Confidence 358899999999985 454443
No 255
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=20.23 E-value=1e+02 Score=23.87 Aligned_cols=33 Identities=15% Similarity=0.131 Sum_probs=28.6
Q ss_pred chHHHHHHhcCCC--CHHHHHHHHHHHHHCChHHH
Q 044269 50 AGLQRFVQMTNWR--YLDSERRFQHGLEACGVTKS 82 (129)
Q Consensus 50 ~~IEr~v~~tnfd--~~es~~rF~r~Lk~~GV~~a 82 (129)
..++.+++.++.+ ++..+.|+.+.|-.+|+.+.
T Consensus 46 ~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~gll~~ 80 (358)
T 1zg3_A 46 MTLSELASSLKLHPSKVNILHRFLRLLTHNGFFAK 80 (358)
T ss_dssp EEHHHHHHHTTCCTTTHHHHHHHHHHHHHTTSEEE
T ss_pred cCHHHHHHhcCCCCcchHHHHHHHHHHhhCCcEEE
Confidence 3578899999997 78999999999999999654
No 256
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=20.21 E-value=66 Score=26.32 Aligned_cols=16 Identities=38% Similarity=0.530 Sum_probs=12.2
Q ss_pred HHHHcCCCCCCEEEEc
Q 044269 82 SLMKLGVKEGDTVIVG 97 (129)
Q Consensus 82 aLkkaGakeGDtV~IG 97 (129)
.|+++|++.||.|-|.
T Consensus 56 ~L~~~gv~~gd~V~i~ 71 (590)
T 3kxw_A 56 TLQAEGAKPGDRVLLL 71 (590)
T ss_dssp HHHHTTCCTTCEEEEE
T ss_pred HHHHcCCCCCCEEEEE
Confidence 3456688999999874
No 257
>2vpz_A Thiosulfate reductase; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_A* 2vpw_A* 2vpy_A*
Probab=20.19 E-value=58 Score=28.56 Aligned_cols=21 Identities=43% Similarity=0.638 Sum_probs=16.3
Q ss_pred HHHHHcCCCCCCEEEE----cCEEE
Q 044269 81 KSLMKLGVKEGDTVIV----GDMEM 101 (129)
Q Consensus 81 ~aLkkaGakeGDtV~I----Gd~EF 101 (129)
+--++.||++||.|+| |.++.
T Consensus 654 ~dA~~lGI~~Gd~V~v~s~~G~v~~ 678 (765)
T 2vpz_A 654 EEAKRLGLKEGDYVMLVNQDGVKEG 678 (765)
T ss_dssp HHHHHTTCCTTCEEEEEETTCCEEE
T ss_pred HHHHHcCCCCCCEEEEEcCCCeEEE
Confidence 4457889999999999 45555
No 258
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=20.17 E-value=58 Score=26.69 Aligned_cols=17 Identities=12% Similarity=0.466 Sum_probs=12.8
Q ss_pred HHHHHcCCCCCCEEEEc
Q 044269 81 KSLMKLGVKEGDTVIVG 97 (129)
Q Consensus 81 ~aLkkaGakeGDtV~IG 97 (129)
..|+++|++.||.|-|.
T Consensus 65 ~~L~~~Gv~~gd~V~i~ 81 (550)
T 3rix_A 65 EAMKRYGLNTNHRIVVC 81 (550)
T ss_dssp HHHHHHTCCTTCEEEEE
T ss_pred HHHHHhCCCCCCEEEEE
Confidence 34556689999999874
No 259
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=20.17 E-value=42 Score=21.57 Aligned_cols=18 Identities=39% Similarity=0.844 Sum_probs=13.6
Q ss_pred HHcCCCCCCEEE-EcCEEE
Q 044269 84 MKLGVKEGDTVI-VGDMEM 101 (129)
Q Consensus 84 kkaGakeGDtV~-IGd~EF 101 (129)
.++|++.||.|. |++..+
T Consensus 55 ~~aGL~~GD~I~~ing~~v 73 (104)
T 1wi2_A 55 HRAGLQEGDQVLAVNDVDF 73 (104)
T ss_dssp HHHTCCTTCEEEEETTEEC
T ss_pred HHcCCCCCCEEEEECCEEC
Confidence 468999999874 666654
No 260
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=20.16 E-value=44 Score=25.54 Aligned_cols=22 Identities=27% Similarity=0.576 Sum_probs=16.7
Q ss_pred HCChHHHHHHcCCCC-CCEEEEc
Q 044269 76 ACGVTKSLMKLGVKE-GDTVIVG 97 (129)
Q Consensus 76 ~~GV~~aLkkaGake-GDtV~IG 97 (129)
.+|+.++|+++|++- +|.-.||
T Consensus 250 A~g~~~al~~~G~~vP~disvvG 272 (349)
T 1jye_A 250 ALGAMRAITESGLRVGADISVVG 272 (349)
T ss_dssp HHHHHHHHHHTTCCBTTTBEEEC
T ss_pred HHHHHHHHHHcCCCCCCcEEEEE
Confidence 568899999999985 5655554
No 261
>4g9b_A Beta-PGM, beta-phosphoglucomutase; HAD, putative phosphoglucomutase, enzyme function initiative structural genomics, isomerase; 1.70A {Escherichia coli}
Probab=20.16 E-value=44 Score=24.16 Aligned_cols=20 Identities=20% Similarity=0.204 Sum_probs=16.3
Q ss_pred HHHHHHcCCCCCCEEEEcCE
Q 044269 80 TKSLMKLGVKEGDTVIVGDM 99 (129)
Q Consensus 80 ~~aLkkaGakeGDtV~IGd~ 99 (129)
..++++.|+.+.++|.|||-
T Consensus 156 ~~a~~~lg~~p~e~l~VgDs 175 (243)
T 4g9b_A 156 LAACAGLGVPPQACIGIEDA 175 (243)
T ss_dssp HHHHHHHTSCGGGEEEEESS
T ss_pred HHHHHHcCCChHHEEEEcCC
Confidence 35677788999999999974
No 262
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=20.16 E-value=41 Score=20.63 Aligned_cols=16 Identities=19% Similarity=0.320 Sum_probs=13.2
Q ss_pred HHHHHcCCCCCCEEEE
Q 044269 81 KSLMKLGVKEGDTVIV 96 (129)
Q Consensus 81 ~aLkkaGakeGDtV~I 96 (129)
+.|.+.|+++|++|.+
T Consensus 62 ~tL~~~~i~~g~~i~l 77 (85)
T 2wyq_A 62 VPIRDYRIDEKNFVVV 77 (85)
T ss_dssp SBGGGGCCCTTSEEEE
T ss_pred CCHHHcCCCCCCEEEE
Confidence 3578889999999875
No 263
>4dw8_A Haloacid dehalogenase-like hydrolase; HAD, putative phosphatase, enzyme function initiative, EFI, structural genomics; 1.50A {Bacteroides thetaiotaomicron} PDB: 3niw_A 4dwo_A
Probab=20.15 E-value=33 Score=25.08 Aligned_cols=23 Identities=17% Similarity=0.404 Sum_probs=18.8
Q ss_pred CChHHHHHHcCCCCCCEEEEcCE
Q 044269 77 CGVTKSLMKLGVKEGDTVIVGDM 99 (129)
Q Consensus 77 ~GV~~aLkkaGakeGDtV~IGd~ 99 (129)
.||...++..|+...+++.|||-
T Consensus 200 ~~l~~l~~~lgi~~~~~i~~GD~ 222 (279)
T 4dw8_A 200 LSLSVLLENIGMTREEVIAIGDG 222 (279)
T ss_dssp HHHHHHHHHHTCCGGGEEEEECS
T ss_pred HHHHHHHHHcCCCHHHEEEECCC
Confidence 34567788889999999999973
No 264
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}
Probab=20.02 E-value=52 Score=20.26 Aligned_cols=18 Identities=28% Similarity=0.571 Sum_probs=13.5
Q ss_pred HHcC-CCCCCEEE-EcCEEE
Q 044269 84 MKLG-VKEGDTVI-VGDMEM 101 (129)
Q Consensus 84 kkaG-akeGDtV~-IGd~EF 101 (129)
.++| ++.||.|. |++..+
T Consensus 37 ~~aG~l~~GD~I~~ing~~v 56 (92)
T 3cyy_A 37 ARDGNIQEGDVVLKINGTVT 56 (92)
T ss_dssp HHSCCCCTTCEEEEETTEEC
T ss_pred HhcCCCCCCCEEEEECCEEC
Confidence 3679 99999984 666655
Done!