BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044271
(369 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Query: 314 CPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATP 361
C +C+ +F S++ +R +P C H FHA+C+D+WL+ N CP+CR + P
Sbjct: 26 CVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGP 72
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 54.3 bits (129), Expect = 1e-07, Method: Composition-based stats.
Identities = 21/43 (48%), Positives = 27/43 (62%)
Query: 314 CPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCR 356
C +CL+E E R +P C H FHAEC+D WL + CP+CR
Sbjct: 8 CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCR 50
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 314 CPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSAT 360
CP+C ++ E++R +P C H FH CI WL +D CPVCR S T
Sbjct: 18 CPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLT 63
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 314 CPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCR 356
C ICLS E +R +P C H FH C+D+WL N KCP+CR
Sbjct: 17 CTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICR 58
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 289 ESTIESFQKLVLGESKRLPGPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL 348
+ +I++ ++++ E G CPIC SE++ + +P C H FH C+ WL+
Sbjct: 19 KESIDALPEILVTEDHGAVG-QEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQK 76
Query: 349 NDKCPVCR 356
+ CPVCR
Sbjct: 77 SGTCPVCR 84
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 314 CPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVC 355
C +CL +F ++ + P CKH FH +C+ +WL + CP+C
Sbjct: 18 CAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLC 58
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 310 NSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSAT 360
SS CPICL + + + + C H H C +E L+ +CP+C ++
Sbjct: 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 38.9 bits (89), Expect = 0.005, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 313 ACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCR 356
AC C +E ++ + EC H FH C+ W++ N++CP+C+
Sbjct: 28 ACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQ 71
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCR 356
N C IC F+ T+ C H F + CI+EW++ +CP+CR
Sbjct: 51 ENELQCIICSEYFIEAVTLNCA----HSFCSYCINEWMKRKIECPICR 94
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCR 356
N C IC F+ T+ C H F + CI+EW++ +CP+CR
Sbjct: 62 ENELQCIICSEYFIEAVTLNCA----HSFCSYCINEWMKRKIECPICR 105
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCR 356
N C IC F+ T+ C H F + CI+EW++ +CP+CR
Sbjct: 51 ENELQCIICSEYFIEAVTLNCA----HSFCSYCINEWMKRKIECPICR 94
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 314 CPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNS 358
CPICL + + + + C H H C +E L+ +CP+C +S
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCMHS 52
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 34.7 bits (78), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 308 GPNSSACPICL---SEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCR 356
G + +CPIC+ SE + + EC H F ++C+ + L+ + CP CR
Sbjct: 4 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 55
Score = 34.7 bits (78), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 308 GPNSSACPICL---SEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCR 356
G + +CPIC+ SE + + EC H F ++C+ + L+ + CP CR
Sbjct: 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 120
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 313 ACPICL---SEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCR 356
+CPIC+ SE + + EC H F ++C+ + L+ + CP CR
Sbjct: 12 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 58
>pdb|3RPG|C Chain C, Bmi1RING1B-Ubch5c Complex Structure
Length = 121
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 314 CPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL-NDKCPVCRN 357
CPICL + T + EC H F A+CI LR N +CP CR
Sbjct: 56 CPICLDMLKNTMTTK---ECLHRFCADCIITALRSGNKECPTCRK 97
>pdb|2CKL|B Chain B, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 165
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 314 CPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL-NDKCPVCRNS 358
CPICL + T + EC H F A+CI LR N +CP CR
Sbjct: 57 CPICLDMLKNTMTTK---ECLHRFCADCIITALRSGNKECPTCRKK 99
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 313 ACPICL---SEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCR 356
+CPIC+ SE + + EC H F ++C+ + L+ + CP CR
Sbjct: 17 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 63
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 313 ACPICL---SEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNS 358
+CPIC+ SE + + EC H F ++C+ + L+ + CP CR
Sbjct: 5 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKK 53
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 32.3 bits (72), Expect = 0.43, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 333 CKHCFHAECIDEWLRLNDKCPV 354
C H FH CI WL+ CP+
Sbjct: 84 CNHAFHFHCISRWLKTRQVCPL 105
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 333 CKHCFHAECIDEWLRLNDKCPVCRNSATPVHASS 366
C H F +CID+W + CP+CR T + SS
Sbjct: 32 CAHSFCQKCIDKWSDRHRNCPICRLQMTGANESS 65
>pdb|2H0D|B Chain B, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 100
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 314 CPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL-NDKCPVCRNSATPVHASSVNP 369
CPICL + T + EC H F A+CI LR N +CP CR V S+ P
Sbjct: 37 CPICLDMLKNTMTTK---ECLHRFCADCIITALRSGNKECPTCRKKL--VSKRSLRP 88
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 32.0 bits (71), Expect = 0.55, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 333 CKHCFHAECIDEWLRLNDKCPV 354
C H FH CI WL+ CP+
Sbjct: 75 CNHAFHFHCISRWLKTRQVCPL 96
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 98
Score = 32.0 bits (71), Expect = 0.57, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 333 CKHCFHAECIDEWLRLNDKCPV 354
C H FH CI WL+ CP+
Sbjct: 65 CNHAFHFHCISRWLKTRQVCPL 86
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 32.0 bits (71), Expect = 0.63, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 333 CKHCFHAECIDEWLRLNDKCPV 354
C H FH CI WL+ CP+
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPL 94
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 31.6 bits (70), Expect = 0.69, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 333 CKHCFHAECIDEWLRLNDKCPV 354
C H FH CI WL+ CP+
Sbjct: 57 CNHAFHFHCISRWLKTRQVCPL 78
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 31.6 bits (70), Expect = 0.69, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 333 CKHCFHAECIDEWLRLNDKCPV 354
C H FH CI WL+ CP+
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPL 94
>pdb|3HNC|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effector Ttp
pdb|3HNC|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effector Ttp
pdb|3HND|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effector Ttp And Substrate Gdp
pdb|3HND|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effector Ttp And Substrate Gdp
pdb|3HNE|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effectors Ttp And Atp
pdb|3HNE|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effectors Ttp And Atp
pdb|3HNF|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effectors Ttp And Datp
pdb|3HNF|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effectors Ttp And Datp
Length = 792
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 38/91 (41%), Gaps = 3/91 (3%)
Query: 46 NCSYPGFNLTCTSQ-GITVLKLPNSGEFFVRNINYITQQIYLYDPEDCLP-KRLQSFNLS 103
N + N+ TS+ KL + VRN+N I Y PE CL KR + +
Sbjct: 445 NLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIG 504
Query: 104 GSPFVATFVSHNYTFLSCPAQVI-KSRFTTI 133
F+ Y F S AQ++ K F TI
Sbjct: 505 VQGLADAFILMRYPFESAEAQLLNKQIFETI 535
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 31.2 bits (69), Expect = 1.0, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 333 CKHCFHAECIDEWLRLNDKCPV 354
C H FH CI WL+ CP+
Sbjct: 67 CNHAFHFHCISRWLKTRQVCPL 88
>pdb|2WGH|A Chain A, Human Ribonucleotide Reductase R1 Subunit (Rrm1) In
Complex With Datp And Mg.
pdb|2WGH|B Chain B, Human Ribonucleotide Reductase R1 Subunit (Rrm1) In
Complex With Datp And Mg
Length = 676
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 38/91 (41%), Gaps = 3/91 (3%)
Query: 46 NCSYPGFNLTCTSQ-GITVLKLPNSGEFFVRNINYITQQIYLYDPEDCLP-KRLQSFNLS 103
N + N+ TS+ KL + VRN+N I Y PE CL KR + +
Sbjct: 372 NLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIG 431
Query: 104 GSPFVATFVSHNYTFLSCPAQVI-KSRFTTI 133
F+ Y F S AQ++ K F TI
Sbjct: 432 VQGLADAFILMRYPFESAEAQLLNKQIFETI 462
>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
Length = 117
Score = 30.8 bits (68), Expect = 1.3, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 314 CPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVC 355
C +C F+ TI EC H F CI +L + CP+C
Sbjct: 18 CVLCGGYFIDATTI---IECLHSFCKTCIVRYLETSKYCPIC 56
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 311 SSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCR 356
+ CPICL + +P C H F CI W+R N CP+C+
Sbjct: 5 AERCPICLED--PSNYSMALP-CLHAFCYVCITRWIRQNPTCPLCK 47
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 30.4 bits (67), Expect = 1.5, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 314 CPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVC 355
C +C F+ TI EC H F CI +L + CP+C
Sbjct: 18 CVLCGGYFIDATTI---IECLHSFCKTCIVRYLETSKYCPIC 56
>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 97
Score = 30.4 bits (67), Expect = 1.6, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 314 CPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVC 355
C +C F+ TI EC H F CI +L + CP+C
Sbjct: 14 CVLCGGYFIDATTI---IECLHSFCKTCIVRYLETSKYCPIC 52
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,645,882
Number of Sequences: 62578
Number of extensions: 351053
Number of successful extensions: 715
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 683
Number of HSP's gapped (non-prelim): 41
length of query: 369
length of database: 14,973,337
effective HSP length: 100
effective length of query: 269
effective length of database: 8,715,537
effective search space: 2344479453
effective search space used: 2344479453
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)