Query 044271
Match_columns 369
No_of_seqs 235 out of 2355
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 13:02:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044271.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044271hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13947 GUB_WAK_bind: Wall-as 99.8 8.6E-19 1.9E-23 138.7 8.6 97 19-123 1-106 (106)
2 KOG4628 Predicted E3 ubiquitin 99.8 5.4E-19 1.2E-23 163.2 6.9 78 284-364 204-282 (348)
3 PF14380 WAK_assoc: Wall-assoc 99.6 1.4E-15 3E-20 117.2 8.0 86 133-224 1-94 (94)
4 PF13639 zf-RING_2: Ring finge 99.6 7.5E-16 1.6E-20 101.4 1.9 44 312-356 1-44 (44)
5 PF12678 zf-rbx1: RING-H2 zinc 99.3 7.2E-13 1.6E-17 96.8 3.9 45 311-356 19-73 (73)
6 PHA02929 N1R/p28-like protein; 99.3 7.4E-13 1.6E-17 117.6 4.6 77 285-361 148-228 (238)
7 COG5540 RING-finger-containing 99.3 2.9E-12 6.2E-17 114.1 4.1 53 308-361 320-373 (374)
8 COG5243 HRD1 HRD ubiquitin lig 99.0 1.5E-10 3.2E-15 105.9 3.5 52 308-360 284-345 (491)
9 cd00162 RING RING-finger (Real 98.9 6.9E-10 1.5E-14 72.8 3.6 44 313-359 1-45 (45)
10 PF13923 zf-C3HC4_2: Zinc fing 98.9 8.7E-10 1.9E-14 70.3 2.8 39 314-355 1-39 (39)
11 PF13920 zf-C3HC4_3: Zinc fing 98.9 1.5E-09 3.2E-14 73.3 3.0 47 311-361 2-49 (50)
12 PF12861 zf-Apc11: Anaphase-pr 98.8 3.4E-09 7.3E-14 78.0 3.4 51 310-360 20-82 (85)
13 PLN03208 E3 ubiquitin-protein 98.7 9.1E-09 2E-13 87.8 4.3 51 308-362 15-81 (193)
14 COG5194 APC11 Component of SCF 98.7 1E-08 2.2E-13 73.1 2.5 51 312-362 21-83 (88)
15 KOG0802 E3 ubiquitin ligase [P 98.7 9E-09 2E-13 104.0 2.2 52 309-361 289-342 (543)
16 PF14634 zf-RING_5: zinc-RING 98.6 2E-08 4.3E-13 65.8 3.0 44 313-357 1-44 (44)
17 PHA02926 zinc finger-like prot 98.6 1.6E-08 3.6E-13 87.1 3.1 52 309-360 168-230 (242)
18 KOG0317 Predicted E3 ubiquitin 98.6 2.2E-08 4.7E-13 89.6 3.9 52 308-363 236-287 (293)
19 PF00097 zf-C3HC4: Zinc finger 98.6 1.9E-08 4.1E-13 64.9 2.2 39 314-355 1-41 (41)
20 smart00184 RING Ring finger. E 98.6 3.3E-08 7.2E-13 62.4 3.0 38 314-355 1-39 (39)
21 KOG0320 Predicted E3 ubiquitin 98.6 6.7E-08 1.4E-12 80.4 4.7 52 308-361 128-179 (187)
22 KOG0823 Predicted E3 ubiquitin 98.4 1.4E-07 3.1E-12 82.0 3.7 52 308-363 44-98 (230)
23 smart00744 RINGv The RING-vari 98.4 2.6E-07 5.6E-12 61.7 2.7 42 313-356 1-49 (49)
24 smart00504 Ubox Modified RING 98.3 6.4E-07 1.4E-11 63.4 3.9 46 312-361 2-47 (63)
25 KOG1493 Anaphase-promoting com 98.3 9.7E-08 2.1E-12 67.6 -0.6 51 310-360 19-81 (84)
26 KOG1734 Predicted RING-contain 98.3 2.4E-07 5.2E-12 81.8 1.2 53 308-361 221-282 (328)
27 KOG0828 Predicted E3 ubiquitin 98.3 2.9E-07 6.2E-12 87.6 1.7 51 311-362 571-636 (636)
28 KOG2930 SCF ubiquitin ligase, 98.2 6.5E-07 1.4E-11 67.3 2.3 50 310-359 45-107 (114)
29 PF15227 zf-C3HC4_4: zinc fing 98.2 7.3E-07 1.6E-11 57.5 2.0 38 314-355 1-42 (42)
30 KOG0804 Cytoplasmic Zn-finger 98.0 1.6E-06 3.5E-11 82.0 1.5 48 311-361 175-223 (493)
31 TIGR00599 rad18 DNA repair pro 98.0 3.8E-06 8.3E-11 80.4 3.9 49 310-362 25-73 (397)
32 PF11793 FANCL_C: FANCL C-term 98.0 1.4E-06 3E-11 63.0 -0.2 50 311-360 2-66 (70)
33 COG5219 Uncharacterized conser 97.8 7.5E-06 1.6E-10 83.6 1.6 53 308-360 1466-1523(1525)
34 PF13445 zf-RING_UBOX: RING-ty 97.8 2E-05 4.3E-10 50.9 2.6 38 314-353 1-43 (43)
35 KOG0827 Predicted E3 ubiquitin 97.8 1.1E-05 2.3E-10 75.0 1.8 46 311-356 4-52 (465)
36 COG5574 PEX10 RING-finger-cont 97.7 1.5E-05 3.2E-10 70.8 2.3 51 309-363 213-265 (271)
37 KOG1645 RING-finger-containing 97.5 7.2E-05 1.6E-09 70.2 3.6 50 310-359 3-55 (463)
38 TIGR00570 cdk7 CDK-activating 97.5 9.1E-05 2E-09 68.2 3.8 52 311-363 3-57 (309)
39 KOG2164 Predicted E3 ubiquitin 97.4 9.3E-05 2E-09 71.7 2.5 47 311-361 186-237 (513)
40 KOG4265 Predicted E3 ubiquitin 97.3 0.00013 2.9E-09 67.7 2.9 49 309-361 288-337 (349)
41 PF04564 U-box: U-box domain; 97.3 0.00015 3.2E-09 52.9 2.5 49 310-362 3-52 (73)
42 KOG0825 PHD Zn-finger protein 97.2 7.7E-05 1.7E-09 75.1 -0.1 51 309-360 121-171 (1134)
43 KOG2177 Predicted E3 ubiquitin 97.2 0.00017 3.8E-09 67.5 1.9 45 309-357 11-55 (386)
44 KOG1039 Predicted E3 ubiquitin 97.2 0.00024 5.2E-09 66.9 2.7 52 309-360 159-221 (344)
45 COG5432 RAD18 RING-finger-cont 97.1 0.00026 5.7E-09 63.5 2.0 48 311-362 25-72 (391)
46 KOG0311 Predicted E3 ubiquitin 96.8 0.00023 5E-09 65.8 -0.9 58 309-369 41-99 (381)
47 KOG0287 Postreplication repair 96.7 0.00066 1.4E-08 62.3 1.6 48 311-362 23-70 (442)
48 KOG0801 Predicted E3 ubiquitin 96.6 0.00056 1.2E-08 56.1 0.4 32 308-340 174-205 (205)
49 KOG4445 Uncharacterized conser 96.6 0.0005 1.1E-08 62.1 0.1 50 311-361 115-187 (368)
50 KOG4172 Predicted E3 ubiquitin 96.6 0.0005 1.1E-08 45.7 -0.0 46 311-360 7-54 (62)
51 KOG0824 Predicted E3 ubiquitin 96.6 0.0013 2.9E-08 59.6 2.5 50 309-362 5-55 (324)
52 PF05883 Baculo_RING: Baculovi 96.5 0.00087 1.9E-08 53.9 0.9 36 311-347 26-67 (134)
53 PF11789 zf-Nse: Zinc-finger o 96.5 0.0017 3.8E-08 44.7 1.9 42 310-354 10-53 (57)
54 PF14835 zf-RING_6: zf-RING of 96.5 0.00072 1.6E-08 47.0 0.0 46 312-362 8-53 (65)
55 PHA02862 5L protein; Provision 96.4 0.0024 5.3E-08 51.6 2.6 45 311-360 2-53 (156)
56 KOG3970 Predicted E3 ubiquitin 96.2 0.0036 7.7E-08 54.3 2.9 54 309-364 48-109 (299)
57 PF14570 zf-RING_4: RING/Ubox 96.2 0.0036 7.8E-08 41.1 2.1 45 314-359 1-47 (48)
58 KOG1428 Inhibitor of type V ad 96.2 0.0036 7.9E-08 67.1 3.1 64 295-360 3471-3544(3738)
59 PF12906 RINGv: RING-variant d 96.0 0.0055 1.2E-07 40.4 2.2 40 314-355 1-47 (47)
60 PHA02825 LAP/PHD finger-like p 95.9 0.0074 1.6E-07 49.9 3.4 49 308-360 5-59 (162)
61 KOG1785 Tyrosine kinase negati 95.9 0.0029 6.4E-08 59.4 0.9 51 309-363 367-419 (563)
62 KOG1941 Acetylcholine receptor 95.9 0.0028 6.1E-08 59.4 0.7 47 309-356 363-412 (518)
63 KOG1952 Transcription factor N 95.1 0.017 3.7E-07 59.4 3.3 51 308-358 188-245 (950)
64 PF14446 Prok-RING_1: Prokaryo 95.0 0.024 5.3E-07 38.1 2.8 35 310-344 4-38 (54)
65 KOG0297 TNF receptor-associate 94.9 0.014 3.1E-07 56.7 2.1 53 309-364 19-71 (391)
66 PF14447 Prok-RING_4: Prokaryo 94.8 0.018 4E-07 38.7 1.8 45 313-363 9-53 (55)
67 KOG1571 Predicted E3 ubiquitin 94.3 0.021 4.6E-07 53.4 1.6 46 308-360 302-347 (355)
68 KOG0827 Predicted E3 ubiquitin 94.3 0.0033 7.1E-08 58.9 -3.8 52 311-363 196-248 (465)
69 PF08746 zf-RING-like: RING-li 94.0 0.038 8.3E-07 35.6 1.9 41 314-355 1-43 (43)
70 PF10367 Vps39_2: Vacuolar sor 94.0 0.023 4.9E-07 44.5 1.0 33 309-343 76-108 (109)
71 KOG4159 Predicted E3 ubiquitin 93.9 0.037 8E-07 53.5 2.5 49 309-361 82-130 (398)
72 PHA03096 p28-like protein; Pro 93.7 0.033 7.2E-07 51.4 1.7 46 312-357 179-231 (284)
73 KOG0978 E3 ubiquitin ligase in 93.6 0.028 6E-07 57.6 1.1 47 311-361 643-690 (698)
74 KOG3039 Uncharacterized conser 93.1 0.09 2E-06 46.5 3.3 52 310-361 220-271 (303)
75 KOG2879 Predicted E3 ubiquitin 92.5 0.18 3.9E-06 45.5 4.4 51 308-361 236-288 (298)
76 KOG0826 Predicted E3 ubiquitin 92.1 0.12 2.6E-06 47.8 2.9 48 308-358 297-344 (357)
77 COG5236 Uncharacterized conser 92.0 0.21 4.5E-06 46.5 4.3 51 307-361 57-109 (493)
78 COG5152 Uncharacterized conser 92.0 0.063 1.4E-06 45.9 0.9 45 311-359 196-240 (259)
79 KOG1002 Nucleotide excision re 91.8 0.077 1.7E-06 51.9 1.4 54 308-365 533-591 (791)
80 KOG3268 Predicted E3 ubiquitin 91.6 0.12 2.6E-06 43.4 2.1 50 312-362 166-230 (234)
81 KOG1940 Zn-finger protein [Gen 91.3 0.12 2.6E-06 47.3 1.9 46 312-357 159-204 (276)
82 KOG1814 Predicted E3 ubiquitin 91.1 0.11 2.4E-06 49.4 1.7 46 311-357 184-237 (445)
83 KOG4692 Predicted E3 ubiquitin 89.9 0.25 5.4E-06 46.1 2.7 52 305-360 416-467 (489)
84 PF04478 Mid2: Mid2 like cell 89.4 0.11 2.4E-06 42.9 0.0 39 225-263 42-80 (154)
85 KOG2114 Vacuolar assembly/sort 89.0 0.18 3.9E-06 52.3 1.3 45 311-361 840-884 (933)
86 PF04641 Rtf2: Rtf2 RING-finge 88.9 0.46 1E-05 43.6 3.8 53 308-361 110-162 (260)
87 KOG2660 Locus-specific chromos 88.5 0.11 2.4E-06 48.1 -0.6 48 310-360 14-61 (331)
88 PF02439 Adeno_E3_CR2: Adenovi 88.4 0.49 1.1E-05 29.3 2.4 29 237-265 8-36 (38)
89 PHA03099 epidermal growth fact 88.2 1.1 2.4E-05 35.7 4.9 22 204-226 56-77 (139)
90 KOG1813 Predicted E3 ubiquitin 86.8 0.26 5.7E-06 44.9 0.8 46 311-360 241-286 (313)
91 KOG0309 Conserved WD40 repeat- 86.0 0.47 1E-05 48.6 2.1 22 333-354 1048-1069(1081)
92 PF03854 zf-P11: P-11 zinc fin 84.7 0.45 9.7E-06 30.9 0.9 29 333-361 18-47 (50)
93 COG5222 Uncharacterized conser 83.9 1 2.2E-05 41.2 3.1 46 311-359 274-321 (427)
94 KOG4185 Predicted E3 ubiquitin 83.8 0.79 1.7E-05 42.8 2.6 48 311-359 3-54 (296)
95 KOG2034 Vacuolar sorting prote 83.3 0.57 1.2E-05 49.1 1.4 37 308-346 814-850 (911)
96 KOG3053 Uncharacterized conser 82.5 0.55 1.2E-05 42.0 0.8 54 308-362 17-84 (293)
97 PF07800 DUF1644: Protein of u 82.3 1.7 3.7E-05 36.2 3.5 52 311-363 2-94 (162)
98 COG5175 MOT2 Transcriptional r 82.3 0.79 1.7E-05 42.6 1.8 52 308-360 11-64 (480)
99 KOG1609 Protein involved in mR 81.8 0.72 1.6E-05 43.4 1.4 51 311-362 78-136 (323)
100 KOG2932 E3 ubiquitin ligase in 81.7 0.59 1.3E-05 42.9 0.8 33 324-359 101-133 (389)
101 KOG0802 E3 ubiquitin ligase [P 80.1 0.98 2.1E-05 46.1 1.8 49 308-364 476-524 (543)
102 KOG0298 DEAD box-containing he 79.9 0.7 1.5E-05 50.3 0.7 45 312-359 1154-1198(1394)
103 PF15102 TMEM154: TMEM154 prot 79.7 1.7 3.7E-05 35.7 2.7 6 342-347 130-135 (146)
104 KOG3002 Zn finger protein [Gen 78.8 1.3 2.8E-05 41.3 2.0 43 310-360 47-91 (299)
105 PF12191 stn_TNFRSF12A: Tumour 78.3 0.62 1.3E-05 37.0 -0.2 35 231-265 75-109 (129)
106 PF01102 Glycophorin_A: Glycop 77.5 1.7 3.7E-05 34.8 2.1 10 236-245 68-77 (122)
107 KOG3161 Predicted E3 ubiquitin 73.6 1.2 2.6E-05 45.0 0.4 44 312-358 12-55 (861)
108 KOG4275 Predicted E3 ubiquitin 73.1 0.78 1.7E-05 41.8 -1.0 41 311-359 300-341 (350)
109 PF13901 DUF4206: Domain of un 72.2 2.6 5.6E-05 37.1 2.1 42 309-356 150-196 (202)
110 KOG1001 Helicase-like transcri 71.6 1 2.2E-05 46.9 -0.7 44 312-360 455-500 (674)
111 PF15050 SCIMP: SCIMP protein 71.5 0.97 2.1E-05 35.5 -0.6 16 240-255 13-28 (133)
112 KOG0269 WD40 repeat-containing 66.6 4.5 9.7E-05 41.9 2.6 41 312-354 780-820 (839)
113 PF10272 Tmpp129: Putative tra 66.3 4.4 9.5E-05 38.8 2.4 27 333-359 311-350 (358)
114 KOG2817 Predicted E3 ubiquitin 66.3 5.2 0.00011 38.3 2.8 50 310-360 333-385 (394)
115 KOG1829 Uncharacterized conser 64.4 2.5 5.4E-05 42.9 0.4 43 309-355 509-556 (580)
116 COG5183 SSM4 Protein involved 64.1 5.4 0.00012 41.6 2.7 51 308-359 9-65 (1175)
117 PF01102 Glycophorin_A: Glycop 63.3 3.6 7.8E-05 33.0 1.0 29 237-265 66-94 (122)
118 smart00249 PHD PHD zinc finger 62.8 4.5 9.7E-05 25.5 1.3 31 313-344 1-31 (47)
119 PF15102 TMEM154: TMEM154 prot 62.1 3.1 6.7E-05 34.2 0.5 17 241-257 66-82 (146)
120 PF13908 Shisa: Wnt and FGF in 60.7 9.3 0.0002 32.8 3.2 7 214-220 48-54 (179)
121 KOG3005 GIY-YIG type nuclease 59.3 5.5 0.00012 36.1 1.6 49 311-359 182-242 (276)
122 KOG4362 Transcriptional regula 57.9 3.1 6.8E-05 42.8 -0.2 50 311-364 21-73 (684)
123 PF05290 Baculo_IE-1: Baculovi 57.4 11 0.00023 30.5 2.7 56 310-365 79-137 (140)
124 PF00558 Vpu: Vpu protein; In 56.5 4.7 0.0001 29.7 0.6 9 236-244 9-17 (81)
125 KOG3899 Uncharacterized conser 55.4 7.4 0.00016 35.7 1.7 27 333-359 325-364 (381)
126 PF00628 PHD: PHD-finger; Int 54.8 5.2 0.00011 26.3 0.5 43 313-356 1-49 (51)
127 TIGR01478 STEVOR variant surfa 54.6 6.4 0.00014 36.1 1.2 27 238-264 262-288 (295)
128 KOG1812 Predicted E3 ubiquitin 53.7 5.5 0.00012 38.7 0.7 38 310-348 145-183 (384)
129 PTZ00370 STEVOR; Provisional 53.3 6.8 0.00015 36.0 1.2 27 238-264 258-284 (296)
130 PF02891 zf-MIZ: MIZ/SP-RING z 51.6 13 0.00027 24.7 2.0 43 312-358 3-50 (50)
131 KOG3842 Adaptor protein Pellin 49.4 20 0.00043 33.3 3.5 54 308-362 338-416 (429)
132 PHA03164 hypothetical protein; 49.3 29 0.00062 25.0 3.5 44 214-257 33-81 (88)
133 PRK11827 hypothetical protein; 49.1 7.3 0.00016 27.0 0.5 20 343-362 2-21 (60)
134 PF15065 NCU-G1: Lysosomal tra 49.0 16 0.00035 34.9 3.0 32 231-262 317-348 (350)
135 PF13719 zinc_ribbon_5: zinc-r 48.9 10 0.00022 23.3 1.2 26 313-338 4-36 (37)
136 KOG3113 Uncharacterized conser 47.9 20 0.00043 32.3 3.2 51 310-362 110-160 (293)
137 PF07975 C1_4: TFIIH C1-like d 47.4 19 0.0004 24.1 2.2 43 314-356 2-50 (51)
138 PF01299 Lamp: Lysosome-associ 47.4 20 0.00042 33.7 3.3 10 156-165 224-233 (306)
139 KOG1100 Predicted E3 ubiquitin 46.9 9.3 0.0002 33.7 1.0 40 314-361 161-201 (207)
140 PF14979 TMEM52: Transmembrane 46.6 24 0.00052 29.0 3.2 35 227-262 15-50 (154)
141 PF15330 SIT: SHP2-interacting 46.3 25 0.00055 27.5 3.3 26 240-265 5-30 (107)
142 PF07204 Orthoreo_P10: Orthore 45.6 9.9 0.00021 28.7 0.8 28 237-264 43-70 (98)
143 COG5220 TFB3 Cdk activating ki 45.1 8.9 0.00019 34.1 0.6 47 310-356 9-60 (314)
144 PF01034 Syndecan: Syndecan do 44.9 7.6 0.00016 27.1 0.1 6 253-258 30-35 (64)
145 PF08374 Protocadherin: Protoc 44.2 18 0.00038 31.9 2.2 16 237-252 43-58 (221)
146 PF05568 ASFV_J13L: African sw 42.8 27 0.00059 28.6 3.0 19 243-261 38-56 (189)
147 PF02009 Rifin_STEVOR: Rifin/s 42.6 12 0.00026 35.0 1.0 28 237-264 258-285 (299)
148 KOG2066 Vacuolar assembly/sort 42.1 11 0.00023 39.5 0.7 8 52-59 85-92 (846)
149 TIGR00622 ssl1 transcription f 42.0 32 0.0007 27.1 3.2 47 311-357 55-111 (112)
150 cd00350 rubredoxin_like Rubred 42.0 17 0.00037 21.7 1.3 20 333-358 7-26 (33)
151 KOG0825 PHD Zn-finger protein 41.6 13 0.00028 38.9 1.1 54 310-363 95-157 (1134)
152 PF05454 DAG1: Dystroglycan (D 41.5 8.8 0.00019 35.7 0.0 22 244-265 156-177 (290)
153 PF06365 CD34_antigen: CD34/Po 41.4 28 0.00061 30.5 3.1 25 241-265 108-132 (202)
154 TIGR01477 RIFIN variant surfac 41.0 17 0.00036 34.7 1.8 28 237-264 312-339 (353)
155 PTZ00046 rifin; Provisional 40.7 17 0.00037 34.7 1.8 28 237-264 317-344 (358)
156 PF14569 zf-UDP: Zinc-binding 39.4 49 0.0011 24.1 3.5 54 309-362 7-64 (80)
157 PF05715 zf-piccolo: Piccolo Z 39.4 23 0.0005 24.3 1.8 14 349-362 2-15 (61)
158 KOG2807 RNA polymerase II tran 39.3 32 0.00069 32.2 3.2 65 292-357 311-375 (378)
159 PF01363 FYVE: FYVE zinc finge 38.2 15 0.00033 25.8 0.9 38 309-346 7-44 (69)
160 PF04639 Baculo_E56: Baculovir 38.0 41 0.00089 31.0 3.7 26 233-258 276-301 (305)
161 PF04710 Pellino: Pellino; In 37.6 11 0.00024 36.2 0.0 51 310-361 327-402 (416)
162 smart00132 LIM Zinc-binding do 37.4 22 0.00047 21.3 1.4 38 313-360 1-38 (39)
163 KOG4718 Non-SMC (structural ma 37.2 19 0.0004 31.6 1.3 43 311-356 181-223 (235)
164 PF13717 zinc_ribbon_4: zinc-r 36.9 18 0.00039 22.1 0.9 25 313-338 4-36 (36)
165 PF04423 Rad50_zn_hook: Rad50 36.4 9.1 0.0002 25.7 -0.5 12 350-361 21-32 (54)
166 KOG0824 Predicted E3 ubiquitin 36.3 21 0.00045 33.1 1.5 52 308-362 102-153 (324)
167 PF10571 UPF0547: Uncharacteri 36.2 17 0.00037 20.6 0.6 23 313-337 2-24 (26)
168 PF14991 MLANA: Protein melan- 36.1 6.7 0.00015 30.7 -1.4 9 257-265 46-54 (118)
169 PF14169 YdjO: Cold-inducible 35.7 20 0.00042 24.8 1.0 13 349-361 39-51 (59)
170 PF06679 DUF1180: Protein of u 34.9 50 0.0011 27.9 3.5 20 235-254 96-115 (163)
171 PTZ00208 65 kDa invariant surf 34.6 35 0.00076 33.0 2.8 29 236-264 387-415 (436)
172 PF05393 Hum_adeno_E3A: Human 33.3 17 0.00037 27.0 0.4 9 257-265 54-62 (94)
173 KOG1815 Predicted E3 ubiquitin 30.7 27 0.00058 34.7 1.5 38 308-348 67-104 (444)
174 PF14914 LRRC37AB_C: LRRC37A/B 29.8 51 0.0011 27.2 2.7 8 236-243 122-129 (154)
175 PF14311 DUF4379: Domain of un 29.8 35 0.00076 22.9 1.5 24 331-355 32-55 (55)
176 KOG1219 Uncharacterized conser 29.3 44 0.00094 39.9 2.8 17 203-222 3953-3969(4289)
177 PTZ00046 rifin; Provisional 29.0 34 0.00073 32.8 1.7 35 233-267 316-350 (358)
178 PF00412 LIM: LIM domain; Int 28.9 25 0.00054 23.4 0.7 39 314-362 1-39 (58)
179 TIGR01477 RIFIN variant surfac 28.3 35 0.00076 32.5 1.7 34 233-266 311-344 (353)
180 PF15179 Myc_target_1: Myc tar 26.9 82 0.0018 27.0 3.5 26 237-262 25-50 (197)
181 KOG1729 FYVE finger containing 26.5 14 0.00031 34.3 -1.2 38 312-350 215-252 (288)
182 PF05399 EVI2A: Ectropic viral 26.4 45 0.00098 29.2 1.9 19 236-254 132-150 (227)
183 PRK05978 hypothetical protein; 25.4 49 0.0011 27.5 1.9 28 330-362 36-65 (148)
184 PF12877 DUF3827: Domain of un 25.2 74 0.0016 32.8 3.4 8 72-79 57-64 (684)
185 PHA02902 putative IMV membrane 25.1 1.8E+02 0.0039 20.4 4.2 14 281-294 48-61 (70)
186 PF05568 ASFV_J13L: African sw 25.0 45 0.00097 27.4 1.5 22 241-262 39-60 (189)
187 smart00064 FYVE Protein presen 24.2 66 0.0014 22.4 2.2 37 311-347 10-46 (68)
188 COG1592 Rubrerythrin [Energy p 24.1 45 0.00097 28.3 1.4 25 327-358 134-158 (166)
189 PF13832 zf-HC5HC2H_2: PHD-zin 23.8 48 0.0011 25.6 1.5 33 311-345 55-88 (110)
190 PF10497 zf-4CXXC_R1: Zinc-fin 23.4 1E+02 0.0022 24.0 3.2 47 311-357 7-69 (105)
191 PF07649 C1_3: C1-like domain; 23.2 68 0.0015 18.4 1.7 29 313-342 2-30 (30)
192 PF06906 DUF1272: Protein of u 23.2 1.6E+02 0.0035 20.0 3.6 47 312-362 6-54 (57)
193 PF12606 RELT: Tumour necrosis 22.6 95 0.0021 20.7 2.5 8 258-265 24-31 (50)
194 PLN02189 cellulose synthase 22.0 1.2E+02 0.0027 33.3 4.5 52 309-360 32-87 (1040)
195 PF03302 VSP: Giardia variant- 21.6 70 0.0015 31.3 2.5 25 236-260 371-395 (397)
196 PF06844 DUF1244: Protein of u 21.5 56 0.0012 23.0 1.3 12 336-347 11-22 (68)
197 PF00558 Vpu: Vpu protein; In 21.4 81 0.0017 23.3 2.1 22 236-257 6-27 (81)
198 PF10577 UPF0560: Uncharacteri 21.2 97 0.0021 32.9 3.4 10 31-40 41-50 (807)
199 PF09723 Zn-ribbon_8: Zinc rib 20.9 24 0.00051 22.4 -0.6 25 332-357 10-34 (42)
200 PF05393 Hum_adeno_E3A: Human 20.7 75 0.0016 23.7 1.8 24 242-265 42-66 (94)
201 cd00065 FYVE FYVE domain; Zinc 20.5 74 0.0016 21.1 1.7 36 312-347 3-38 (57)
202 PF10868 DUF2667: Protein of u 20.1 59 0.0013 24.5 1.2 27 194-220 45-77 (90)
No 1
>PF13947 GUB_WAK_bind: Wall-associated receptor kinase galacturonan-binding
Probab=99.77 E-value=8.6e-19 Score=138.71 Aligned_cols=97 Identities=30% Similarity=0.688 Sum_probs=75.7
Q ss_pred CCCCCCCCCCCCCCcccccccCCCCCCCCCC-CCCeeEecCC-CceeEeCCCcccEEEeEEeecCcEEEEeCC--CCCcc
Q 044271 19 SESCQVHFCADNIPVRFPFQLHGKQPENCSY-PGFNLTCTSQ-GITVLKLPNSGEFFVRNINYITQQIYLYDP--EDCLP 94 (369)
Q Consensus 19 ~~~C~~~~CG~~~~i~yPF~~~~~~~~~Cg~-~~f~l~C~~~-~~~~~~~~~~~~~~V~~I~~~~~~i~v~~~--~~C~~ 94 (369)
+++|+ .+||| ++|+||||++++ |++ |+|+|+|+++ +.+.+.+. .+.|+|++|+|++++|+|.++ ..|..
T Consensus 1 ~~~C~-~~CGn-v~IpYPFgi~~~----C~~~~~F~L~C~~~~~~~~l~l~-~~~~~V~~I~~~~~~i~v~~~~~~~~~~ 73 (106)
T PF13947_consen 1 KPGCP-SSCGN-VSIPYPFGIGPG----CGRDPGFELTCNNNTSPPKLLLS-SGNYEVLSISYENGTIRVSDPISSNCYS 73 (106)
T ss_pred CCCCC-CccCC-EeecCCCccCCC----CCCCCCcEEECCCCCCCceeEec-CCcEEEEEEecCCCEEEEEeccccceec
Confidence 46897 49999 999999999765 999 9999999885 24566663 578999999999999999995 45544
Q ss_pred ccc-----cccccCCCCceeecccccEEEEcCCC
Q 044271 95 KRL-----QSFNLSGSPFVATFVSHNYTFLSCPA 123 (369)
Q Consensus 95 ~~~-----~~~~l~~~~f~~s~~~~~~~~~~C~~ 123 (369)
... .+++++. +|.++...|.++++||+.
T Consensus 74 ~~~~~~~~~~~~~~~-~~~~s~~~N~~~~~GC~t 106 (106)
T PF13947_consen 74 SSSSNSSNSNLSLNG-PFFFSSSSNKFTVVGCNT 106 (106)
T ss_pred CCCCcccccEEeecC-CceEccCCcEEEEECCCC
Confidence 321 1233334 788888889999999974
No 2
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=5.4e-19 Score=163.16 Aligned_cols=78 Identities=26% Similarity=0.658 Sum_probs=65.4
Q ss_pred cCCCCHHHHhhccceeeccCCCCCCCCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCC-CCCcCCCCcCC
Q 044271 284 TVGLDESTIESFQKLVLGESKRLPGPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDK-CPVCRNSATPV 362 (369)
Q Consensus 284 ~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~-CP~Cr~~~~~~ 362 (369)
...+.++.++++|...|......... +.||||||+|++||++|+|| |+|.||..|||+||.++.+ ||+||+++...
T Consensus 204 ~~r~~k~~l~~~p~~~f~~~~~~~~~--~~CaIClEdY~~GdklRiLP-C~H~FH~~CIDpWL~~~r~~CPvCK~di~~~ 280 (348)
T KOG4628|consen 204 RNRLIKRLLKKLPVRTFTKGDDEDAT--DTCAICLEDYEKGDKLRILP-CSHKFHVNCIDPWLTQTRTFCPVCKRDIRTD 280 (348)
T ss_pred hhhhHHHHHhhCCcEEeccccccCCC--ceEEEeecccccCCeeeEec-CCCchhhccchhhHhhcCccCCCCCCcCCCC
Confidence 34677889999999999875533222 79999999999999999999 9999999999999988755 99999987655
Q ss_pred CC
Q 044271 363 HA 364 (369)
Q Consensus 363 ~~ 364 (369)
..
T Consensus 281 ~~ 282 (348)
T KOG4628|consen 281 SG 282 (348)
T ss_pred CC
Confidence 43
No 3
>PF14380 WAK_assoc: Wall-associated receptor kinase C-terminal
Probab=99.62 E-value=1.4e-15 Score=117.23 Aligned_cols=86 Identities=28% Similarity=0.574 Sum_probs=64.8
Q ss_pred eccCCCCCc-eEEEEeCCcccccccccCccceeeeeccccCC-----CCchhHHHhhcCCeeEEeC--CCCChhhhcCCC
Q 044271 133 IDCLSNSTT-SVLATSSVSFVNSMISSCQIISTLTVPISRPV-----HYDEGFIIDLNSDLPLTWS--LPDCIDCEARGQ 204 (369)
Q Consensus 133 ~~C~~~~~~-~~y~~~~~~~~~~~~~~C~~~~~v~vP~~~~~-----~~~~~~~~~l~~Gf~l~w~--~~~C~~C~~sgG 204 (369)
|+|..+++. ..|++... ..+...|+.+ +.|||.... ....+|.++|++||+|+|+ ..+|.+|++|||
T Consensus 1 ~~C~~~~~~~~~~~v~~~---~~~~~~C~~~--v~vPV~~~~~~~~~~~~~~~~~~L~~GF~L~w~~~~~~C~~C~~SgG 75 (94)
T PF14380_consen 1 INCSINSGNSVSYFVFRS---SDLAGSCQKS--VVVPVLGSAVDSIDGSSGNYEEVLKKGFELEWNADSGDCRECEASGG 75 (94)
T ss_pred CccccCCCCceeEEEeCC---cccCCcCCEE--EEEEECchhhhccccchhHHHHHHhcCcEEEEeCCCCcCcChhcCCC
Confidence 467666543 34444333 4467899954 567776542 2458899999999999999 478999999999
Q ss_pred eeecccCCCcceEeecCCCC
Q 044271 205 ICGFKSRNSQEIGCFNNSKP 224 (369)
Q Consensus 205 ~Cg~~~~~~~~~~C~~~~~~ 224 (369)
+|||+.++ .+|.|+|++++
T Consensus 76 ~Cgy~~~~-~~f~C~C~dg~ 94 (94)
T PF14380_consen 76 RCGYDSNS-EQFTCFCSDGP 94 (94)
T ss_pred EeCCCCCC-ceEEEECCCCC
Confidence 99999765 69999999864
No 4
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.57 E-value=7.5e-16 Score=101.40 Aligned_cols=44 Identities=55% Similarity=1.294 Sum_probs=40.8
Q ss_pred ccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcC
Q 044271 312 SACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCR 356 (369)
Q Consensus 312 ~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr 356 (369)
++|+||+++|..++.+..++ |+|.||.+||..|++++.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhCCcCCccC
Confidence 57999999999999999999 999999999999999999999997
No 5
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.34 E-value=7.2e-13 Score=96.79 Aligned_cols=45 Identities=40% Similarity=0.983 Sum_probs=36.2
Q ss_pred cccccccccccccC----------ceeeeeCCCCCccChHhHHHHHhcCCCCCCcC
Q 044271 311 SSACPICLSEFLSQ----------ETIRCIPECKHCFHAECIDEWLRLNDKCPVCR 356 (369)
Q Consensus 311 ~~~C~ICL~~~~~~----------~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr 356 (369)
++.|+||++++.+. -.+...+ |+|.||..||.+||+.+.+||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~-C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGP-CGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEET-TSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecc-cCCCEEHHHHHHHHhcCCcCCCCC
Confidence 56799999999322 3444455 999999999999999999999998
No 6
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.34 E-value=7.4e-13 Score=117.62 Aligned_cols=77 Identities=23% Similarity=0.560 Sum_probs=57.8
Q ss_pred CCCCHHHHhhccceeeccCCCCCCCCcccccccccccccCc----eeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCc
Q 044271 285 VGLDESTIESFQKLVLGESKRLPGPNSSACPICLSEFLSQE----TIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSAT 360 (369)
Q Consensus 285 ~g~~~~~~~~~p~~~~~~~~~~~~~~~~~C~ICL~~~~~~~----~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~ 360 (369)
.+..++.++.+|....+-........+.+|+||++++.+.+ .+.+++.|+|.||.+||..|++.+.+||+||.++.
T Consensus 148 ~~~~~~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 148 GKNYKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred cchhHHHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 44566777788877654332223345789999999987654 23455569999999999999999999999999875
Q ss_pred C
Q 044271 361 P 361 (369)
Q Consensus 361 ~ 361 (369)
.
T Consensus 228 ~ 228 (238)
T PHA02929 228 S 228 (238)
T ss_pred E
Confidence 3
No 7
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=2.9e-12 Score=114.11 Aligned_cols=53 Identities=42% Similarity=1.118 Sum_probs=48.2
Q ss_pred CCCcccccccccccccCceeeeeCCCCCccChHhHHHHHhc-CCCCCCcCCCCcC
Q 044271 308 GPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL-NDKCPVCRNSATP 361 (369)
Q Consensus 308 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~-~~~CP~Cr~~~~~ 361 (369)
...+.+|+|||++|-.+|+++.+| |+|.||..|++.|+.. +..||+||.++.|
T Consensus 320 a~~GveCaICms~fiK~d~~~vlP-C~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 320 ADKGVECAICMSNFIKNDRLRVLP-CDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred cCCCceEEEEhhhhcccceEEEec-cCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 344689999999999999999999 9999999999999985 6679999999876
No 8
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=1.5e-10 Score=105.94 Aligned_cols=52 Identities=31% Similarity=0.887 Sum_probs=43.7
Q ss_pred CCCccccccccccc-ccC---------ceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCc
Q 044271 308 GPNSSACPICLSEF-LSQ---------ETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSAT 360 (369)
Q Consensus 308 ~~~~~~C~ICL~~~-~~~---------~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~ 360 (369)
..++..|+||+||+ +.+ .+-+.|| |||++|-.|+..|++++.+||+||.++.
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLp-CGHilHl~CLknW~ERqQTCPICr~p~i 345 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLP-CGHILHLHCLKNWLERQQTCPICRRPVI 345 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCccccc-ccceeeHHHHHHHHHhccCCCcccCccc
Confidence 45678999999994 443 1336788 9999999999999999999999999953
No 9
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.95 E-value=6.9e-10 Score=72.80 Aligned_cols=44 Identities=48% Similarity=1.262 Sum_probs=37.4
Q ss_pred cccccccccccCceeeeeCCCCCccChHhHHHHHhc-CCCCCCcCCCC
Q 044271 313 ACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL-NDKCPVCRNSA 359 (369)
Q Consensus 313 ~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~-~~~CP~Cr~~~ 359 (369)
.|+||++++ .+.+...+ |+|.||..|++.|++. +..||+||..+
T Consensus 1 ~C~iC~~~~--~~~~~~~~-C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEF--REPVVLLP-CGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhh--hCceEecC-CCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 599999998 44555566 9999999999999987 77899999864
No 10
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.91 E-value=8.7e-10 Score=70.30 Aligned_cols=39 Identities=51% Similarity=1.218 Sum_probs=33.4
Q ss_pred ccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCc
Q 044271 314 CPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVC 355 (369)
Q Consensus 314 C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~C 355 (369)
|+||++++.+ .+..++ |||.|+.+|+..|++.+.+||+|
T Consensus 1 C~iC~~~~~~--~~~~~~-CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD--PVVVTP-CGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS--EEEECT-TSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccC--cCEECC-CCCchhHHHHHHHHHCcCCCcCC
Confidence 8999998877 556777 99999999999999999999998
No 11
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.87 E-value=1.5e-09 Score=73.34 Aligned_cols=47 Identities=34% Similarity=0.909 Sum_probs=39.7
Q ss_pred cccccccccccccCceeeeeCCCCCc-cChHhHHHHHhcCCCCCCcCCCCcC
Q 044271 311 SSACPICLSEFLSQETIRCIPECKHC-FHAECIDEWLRLNDKCPVCRNSATP 361 (369)
Q Consensus 311 ~~~C~ICL~~~~~~~~~~~l~~C~H~-fH~~Ci~~wl~~~~~CP~Cr~~~~~ 361 (369)
+..|.||+++..+ +..+| |||. |...|+..|++.+..||+||+++..
T Consensus 2 ~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 2 DEECPICFENPRD---VVLLP-CGHLCFCEECAERLLKRKKKCPICRQPIES 49 (50)
T ss_dssp HSB-TTTSSSBSS---EEEET-TCEEEEEHHHHHHHHHTTSBBTTTTBB-SE
T ss_pred cCCCccCCccCCc---eEEeC-CCChHHHHHHhHHhcccCCCCCcCChhhcC
Confidence 5789999998554 66788 9999 9999999999999999999998753
No 12
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.81 E-value=3.4e-09 Score=77.98 Aligned_cols=51 Identities=33% Similarity=0.778 Sum_probs=39.5
Q ss_pred Ccccccccccccc--------cCce-eeeeCCCCCccChHhHHHHHhc---CCCCCCcCCCCc
Q 044271 310 NSSACPICLSEFL--------SQET-IRCIPECKHCFHAECIDEWLRL---NDKCPVCRNSAT 360 (369)
Q Consensus 310 ~~~~C~ICL~~~~--------~~~~-~~~l~~C~H~fH~~Ci~~wl~~---~~~CP~Cr~~~~ 360 (369)
.+++|.||...|. .|+. -.++.+|+|.||..||.+||.. +..||+||++..
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 3789999999987 2222 1234469999999999999975 567999999754
No 13
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.74 E-value=9.1e-09 Score=87.83 Aligned_cols=51 Identities=29% Similarity=0.697 Sum_probs=40.3
Q ss_pred CCCcccccccccccccCceeeeeCCCCCccChHhHHHHHhc----------------CCCCCCcCCCCcCC
Q 044271 308 GPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL----------------NDKCPVCRNSATPV 362 (369)
Q Consensus 308 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~----------------~~~CP~Cr~~~~~~ 362 (369)
..++.+|+||++.+++. .+++ |||.|+..||..|+.. ...||+||.++...
T Consensus 15 ~~~~~~CpICld~~~dP---VvT~-CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~ 81 (193)
T PLN03208 15 SGGDFDCNICLDQVRDP---VVTL-CGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEA 81 (193)
T ss_pred CCCccCCccCCCcCCCc---EEcC-CCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChh
Confidence 34568999999998654 3356 9999999999999852 35799999987543
No 14
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.68 E-value=1e-08 Score=73.13 Aligned_cols=51 Identities=27% Similarity=0.670 Sum_probs=38.8
Q ss_pred ccccccccccc-----------cCce-eeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcCC
Q 044271 312 SACPICLSEFL-----------SQET-IRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPV 362 (369)
Q Consensus 312 ~~C~ICL~~~~-----------~~~~-~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~~ 362 (369)
++|+||...+. .+++ ......|+|.||..||.+||..+..|||+|+.-.-+
T Consensus 21 d~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~~ 83 (88)
T COG5194 21 DVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVLA 83 (88)
T ss_pred chhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEEe
Confidence 78888877653 3332 233345999999999999999999999999875433
No 15
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=9e-09 Score=104.05 Aligned_cols=52 Identities=33% Similarity=0.835 Sum_probs=45.8
Q ss_pred CCcccccccccccccCce--eeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcC
Q 044271 309 PNSSACPICLSEFLSQET--IRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATP 361 (369)
Q Consensus 309 ~~~~~C~ICL~~~~~~~~--~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~ 361 (369)
..+..|+||+|++..++. .+.+| |+|+||..|+..|+++..+||+||..+..
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~-C~Hifh~~CL~~W~er~qtCP~CR~~~~~ 342 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLP-CGHIFHDSCLRSWFERQQTCPTCRTVLYD 342 (543)
T ss_pred hcCCeeeeechhhccccccccceee-cccchHHHHHHHHHHHhCcCCcchhhhhc
Confidence 347899999999999866 67888 99999999999999999999999995443
No 16
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.65 E-value=2e-08 Score=65.76 Aligned_cols=44 Identities=30% Similarity=0.810 Sum_probs=38.8
Q ss_pred cccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCC
Q 044271 313 ACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRN 357 (369)
Q Consensus 313 ~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~ 357 (369)
.|.||+++|.+.+..++++ |||+|+..|+..+......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~-CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTS-CGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcc-cCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 4899999996666777787 9999999999999877888999985
No 17
>PHA02926 zinc finger-like protein; Provisional
Probab=98.64 E-value=1.6e-08 Score=87.09 Aligned_cols=52 Identities=31% Similarity=0.788 Sum_probs=40.1
Q ss_pred CCcccccccccccccC-----ceeeeeCCCCCccChHhHHHHHhcC------CCCCCcCCCCc
Q 044271 309 PNSSACPICLSEFLSQ-----ETIRCIPECKHCFHAECIDEWLRLN------DKCPVCRNSAT 360 (369)
Q Consensus 309 ~~~~~C~ICL~~~~~~-----~~~~~l~~C~H~fH~~Ci~~wl~~~------~~CP~Cr~~~~ 360 (369)
..+.+|+||||..-++ ..-.+|+.|+|.|+..||+.|.+.+ .+||+||....
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 3468999999986433 1234676799999999999999753 45999999754
No 18
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=2.2e-08 Score=89.58 Aligned_cols=52 Identities=31% Similarity=0.769 Sum_probs=44.1
Q ss_pred CCCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcCCC
Q 044271 308 GPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPVH 363 (369)
Q Consensus 308 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~~~ 363 (369)
......|.+|||...+.. .+| |||+|+..||..|...+..||+||....+..
T Consensus 236 ~~a~~kC~LCLe~~~~pS---aTp-CGHiFCWsCI~~w~~ek~eCPlCR~~~~psk 287 (293)
T KOG0317|consen 236 PEATRKCSLCLENRSNPS---ATP-CGHIFCWSCILEWCSEKAECPLCREKFQPSK 287 (293)
T ss_pred CCCCCceEEEecCCCCCC---cCc-CcchHHHHHHHHHHccccCCCcccccCCCcc
Confidence 345679999999876654 377 9999999999999999999999999887653
No 19
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.62 E-value=1.9e-08 Score=64.86 Aligned_cols=39 Identities=44% Similarity=1.150 Sum_probs=33.7
Q ss_pred ccccccccccCceeeeeCCCCCccChHhHHHHHh--cCCCCCCc
Q 044271 314 CPICLSEFLSQETIRCIPECKHCFHAECIDEWLR--LNDKCPVC 355 (369)
Q Consensus 314 C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~--~~~~CP~C 355 (369)
|+||++.+.+.. ..++ |+|.|+..|+..|++ ....||+|
T Consensus 1 C~iC~~~~~~~~--~~~~-C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV--ILLP-CGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE--EETT-TSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCC--EEec-CCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999977765 5666 999999999999998 56779998
No 20
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.60 E-value=3.3e-08 Score=62.36 Aligned_cols=38 Identities=47% Similarity=1.241 Sum_probs=32.5
Q ss_pred ccccccccccCceeeeeCCCCCccChHhHHHHHh-cCCCCCCc
Q 044271 314 CPICLSEFLSQETIRCIPECKHCFHAECIDEWLR-LNDKCPVC 355 (369)
Q Consensus 314 C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~-~~~~CP~C 355 (369)
|+||++. ......++ |+|.||..|++.|++ .+..||+|
T Consensus 1 C~iC~~~---~~~~~~~~-C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEE---LKDPVVLP-CGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccC---CCCcEEec-CCChHHHHHHHHHHHhCcCCCCCC
Confidence 7899998 34566677 999999999999998 67779987
No 21
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=6.7e-08 Score=80.39 Aligned_cols=52 Identities=33% Similarity=0.802 Sum_probs=43.8
Q ss_pred CCCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcC
Q 044271 308 GPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATP 361 (369)
Q Consensus 308 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~ 361 (369)
+..-..|+|||+.+.+...+. . +|||+|++.||..-++....||+|+..|..
T Consensus 128 ~~~~~~CPiCl~~~sek~~vs-T-kCGHvFC~~Cik~alk~~~~CP~C~kkIt~ 179 (187)
T KOG0320|consen 128 KEGTYKCPICLDSVSEKVPVS-T-KCGHVFCSQCIKDALKNTNKCPTCRKKITH 179 (187)
T ss_pred cccccCCCceecchhhccccc-c-ccchhHHHHHHHHHHHhCCCCCCcccccch
Confidence 455689999999988876643 3 499999999999999999999999986643
No 22
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=1.4e-07 Score=82.02 Aligned_cols=52 Identities=27% Similarity=0.719 Sum_probs=41.6
Q ss_pred CCCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcC---CCCCCcCCCCcCCC
Q 044271 308 GPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLN---DKCPVCRNSATPVH 363 (369)
Q Consensus 308 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~---~~CP~Cr~~~~~~~ 363 (369)
.....+|-||||. ..|.|..+ |||.|+..||-+||+.+ +.||+||..+....
T Consensus 44 ~~~~FdCNICLd~--akdPVvTl--CGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~ 98 (230)
T KOG0823|consen 44 DGGFFDCNICLDL--AKDPVVTL--CGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDT 98 (230)
T ss_pred CCCceeeeeeccc--cCCCEEee--cccceehHHHHHHHhhcCCCeeCCccccccccce
Confidence 3556899999997 45566655 99999999999999763 45899999876543
No 23
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.37 E-value=2.6e-07 Score=61.71 Aligned_cols=42 Identities=31% Similarity=0.891 Sum_probs=32.6
Q ss_pred cccccccccccCceeeeeCCCC-----CccChHhHHHHHhc--CCCCCCcC
Q 044271 313 ACPICLSEFLSQETIRCIPECK-----HCFHAECIDEWLRL--NDKCPVCR 356 (369)
Q Consensus 313 ~C~ICL~~~~~~~~~~~l~~C~-----H~fH~~Ci~~wl~~--~~~CP~Cr 356 (369)
.|.||+++..+++. .+.| |. |.+|..|++.|+.. +.+||+|+
T Consensus 1 ~CrIC~~~~~~~~~-l~~P-C~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDP-LVSP-CRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCe-eEec-cccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 48999994444444 4678 84 99999999999955 45899995
No 24
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.32 E-value=6.4e-07 Score=63.44 Aligned_cols=46 Identities=24% Similarity=0.508 Sum_probs=39.8
Q ss_pred ccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcC
Q 044271 312 SACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATP 361 (369)
Q Consensus 312 ~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~ 361 (369)
..|+||++-+++. + .++ |||+|.+.||..|++.+.+||+|+.++..
T Consensus 2 ~~Cpi~~~~~~~P--v-~~~-~G~v~~~~~i~~~~~~~~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMKDP--V-ILP-SGQTYERRAIEKWLLSHGTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCCCC--E-ECC-CCCEEeHHHHHHHHHHCCCCCCCcCCCCh
Confidence 4799999998874 3 356 99999999999999999999999998744
No 25
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=9.7e-08 Score=67.60 Aligned_cols=51 Identities=33% Similarity=0.763 Sum_probs=37.4
Q ss_pred Ccccccccccccc--------cCcee-eeeCCCCCccChHhHHHHHhc---CCCCCCcCCCCc
Q 044271 310 NSSACPICLSEFL--------SQETI-RCIPECKHCFHAECIDEWLRL---NDKCPVCRNSAT 360 (369)
Q Consensus 310 ~~~~C~ICL~~~~--------~~~~~-~~l~~C~H~fH~~Ci~~wl~~---~~~CP~Cr~~~~ 360 (369)
.+++|-||..+|. .||.. .++..|.|.||..||.+|+.. +..||+||+.-.
T Consensus 19 ~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 19 PDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 3569999999985 22311 233359999999999999965 455999998743
No 26
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=2.4e-07 Score=81.76 Aligned_cols=53 Identities=25% Similarity=0.635 Sum_probs=43.5
Q ss_pred CCCcccccccccccccCc-------eeeeeCCCCCccChHhHHHHH--hcCCCCCCcCCCCcC
Q 044271 308 GPNSSACPICLSEFLSQE-------TIRCIPECKHCFHAECIDEWL--RLNDKCPVCRNSATP 361 (369)
Q Consensus 308 ~~~~~~C~ICL~~~~~~~-------~~~~l~~C~H~fH~~Ci~~wl--~~~~~CP~Cr~~~~~ 361 (369)
..++..|+||-..+.... ..-.|. |+|+||+.||+.|. -++.+||.||..++.
T Consensus 221 hl~d~vCaVCg~~~~~s~~eegvienty~Ls-CnHvFHEfCIrGWcivGKkqtCPYCKekVdl 282 (328)
T KOG1734|consen 221 HLSDSVCAVCGQQIDVSVDEEGVIENTYKLS-CNHVFHEFCIRGWCIVGKKQTCPYCKEKVDL 282 (328)
T ss_pred CCCcchhHhhcchheeecchhhhhhhheeee-cccchHHHhhhhheeecCCCCCchHHHHhhH
Confidence 446789999998876655 556787 99999999999998 467899999886643
No 27
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=2.9e-07 Score=87.62 Aligned_cols=51 Identities=33% Similarity=0.871 Sum_probs=40.0
Q ss_pred cccccccccccccCce--------------eeeeCCCCCccChHhHHHHHh-cCCCCCCcCCCCcCC
Q 044271 311 SSACPICLSEFLSQET--------------IRCIPECKHCFHAECIDEWLR-LNDKCPVCRNSATPV 362 (369)
Q Consensus 311 ~~~C~ICL~~~~~~~~--------------~~~l~~C~H~fH~~Ci~~wl~-~~~~CP~Cr~~~~~~ 362 (369)
..+|+||+.+...-.+ --..| |.|+||+.|+.+|+. .+..||+||.++.+.
T Consensus 571 t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tP-C~HifH~~CL~~WMd~ykl~CPvCR~pLPpl 636 (636)
T KOG0828|consen 571 TNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTP-CHHIFHRQCLLQWMDTYKLICPVCRCPLPPL 636 (636)
T ss_pred cccceEeccccceeeccCcchhhhhhhhccccccc-hHHHHHHHHHHHHHhhhcccCCccCCCCCCC
Confidence 4799999998653221 12446 999999999999998 466999999998763
No 28
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=6.5e-07 Score=67.32 Aligned_cols=50 Identities=30% Similarity=0.699 Sum_probs=39.4
Q ss_pred Cccccccccccc-------------ccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCC
Q 044271 310 NSSACPICLSEF-------------LSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSA 359 (369)
Q Consensus 310 ~~~~C~ICL~~~-------------~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~ 359 (369)
.-+.||||...+ ..++-......|+|.||-.||.+||+.+..||||.++-
T Consensus 45 ~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW 107 (114)
T KOG2930|consen 45 VVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEW 107 (114)
T ss_pred eechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcce
Confidence 458899997654 23344455557999999999999999999999998764
No 29
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.21 E-value=7.3e-07 Score=57.51 Aligned_cols=38 Identities=37% Similarity=0.987 Sum_probs=28.6
Q ss_pred ccccccccccCceeeeeCCCCCccChHhHHHHHhcC----CCCCCc
Q 044271 314 CPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLN----DKCPVC 355 (369)
Q Consensus 314 C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~----~~CP~C 355 (369)
|+||++-|++... ++ |||.|...||..|.+.. ..||+|
T Consensus 1 CpiC~~~~~~Pv~---l~-CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVS---LP-CGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE----S-SSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccc---cC-CcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999887554 66 99999999999999763 469987
No 30
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=98.04 E-value=1.6e-06 Score=81.96 Aligned_cols=48 Identities=40% Similarity=1.014 Sum_probs=40.8
Q ss_pred cccccccccccccCc-eeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcC
Q 044271 311 SSACPICLSEFLSQE-TIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATP 361 (369)
Q Consensus 311 ~~~C~ICL~~~~~~~-~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~ 361 (369)
...|+||||.+.+.- .++... |+|.||..|+..| ...+||+||....+
T Consensus 175 LPTCpVCLERMD~s~~gi~t~~-c~Hsfh~~cl~~w--~~~scpvcR~~q~p 223 (493)
T KOG0804|consen 175 LPTCPVCLERMDSSTTGILTIL-CNHSFHCSCLMKW--WDSSCPVCRYCQSP 223 (493)
T ss_pred CCCcchhHhhcCccccceeeee-cccccchHHHhhc--ccCcChhhhhhcCc
Confidence 469999999998776 445555 9999999999999 89999999987664
No 31
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.03 E-value=3.8e-06 Score=80.42 Aligned_cols=49 Identities=33% Similarity=0.670 Sum_probs=41.7
Q ss_pred CcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcCC
Q 044271 310 NSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPV 362 (369)
Q Consensus 310 ~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~~ 362 (369)
....|+||++.|... + +++ |+|.|+..||..|+.....||+||..+...
T Consensus 25 ~~l~C~IC~d~~~~P--v-itp-CgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~ 73 (397)
T TIGR00599 25 TSLRCHICKDFFDVP--V-LTS-CSHTFCSLCIRRCLSNQPKCPLCRAEDQES 73 (397)
T ss_pred cccCCCcCchhhhCc--c-CCC-CCCchhHHHHHHHHhCCCCCCCCCCccccc
Confidence 457999999998654 3 467 999999999999999888999999987543
No 32
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.97 E-value=1.4e-06 Score=62.96 Aligned_cols=50 Identities=30% Similarity=0.705 Sum_probs=24.1
Q ss_pred cccccccccccccCc--eeeee--CCCCCccChHhHHHHHhc----C-------CCCCCcCCCCc
Q 044271 311 SSACPICLSEFLSQE--TIRCI--PECKHCFHAECIDEWLRL----N-------DKCPVCRNSAT 360 (369)
Q Consensus 311 ~~~C~ICL~~~~~~~--~~~~l--~~C~H~fH~~Ci~~wl~~----~-------~~CP~Cr~~~~ 360 (369)
+.+|.||.+...+.+ ..... +.|++.||..||..||+. + -.||.|+.++.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 468999999876333 22333 269999999999999963 1 13999999875
No 33
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.80 E-value=7.5e-06 Score=83.58 Aligned_cols=53 Identities=28% Similarity=0.715 Sum_probs=40.4
Q ss_pred CCCcccccccccccccCc---eeeeeCCCCCccChHhHHHHHhc--CCCCCCcCCCCc
Q 044271 308 GPNSSACPICLSEFLSQE---TIRCIPECKHCFHAECIDEWLRL--NDKCPVCRNSAT 360 (369)
Q Consensus 308 ~~~~~~C~ICL~~~~~~~---~~~~l~~C~H~fH~~Ci~~wl~~--~~~CP~Cr~~~~ 360 (369)
-.+..+||||..-...-| +-...+.|+|-||..|+-.|++. +.+||+||.++.
T Consensus 1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred cCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 345689999988765222 22345569999999999999976 677999998764
No 34
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=97.77 E-value=2e-05 Score=50.89 Aligned_cols=38 Identities=37% Similarity=0.946 Sum_probs=22.1
Q ss_pred ccccccccccCc-eeeeeCCCCCccChHhHHHHHhcC----CCCC
Q 044271 314 CPICLSEFLSQE-TIRCIPECKHCFHAECIDEWLRLN----DKCP 353 (369)
Q Consensus 314 C~ICL~~~~~~~-~~~~l~~C~H~fH~~Ci~~wl~~~----~~CP 353 (369)
|+||+| |.+.+ .-..|+ |||.|.++||+.|++.. ..||
T Consensus 1 CpIc~e-~~~~~n~P~~L~-CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLP-CGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-S-SS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEe-CccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 75544 446688 99999999999999753 3476
No 35
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=1.1e-05 Score=75.04 Aligned_cols=46 Identities=30% Similarity=0.871 Sum_probs=35.4
Q ss_pred cccccccccccccCceeeeeCCCCCccChHhHHHHHhc---CCCCCCcC
Q 044271 311 SSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL---NDKCPVCR 356 (369)
Q Consensus 311 ~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~---~~~CP~Cr 356 (369)
...|.||-+-+-....+.-+..|||+||..|+.+|+.. +..||+||
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ 52 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQ 52 (465)
T ss_pred cceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCcee
Confidence 35899994444444455555569999999999999976 46799999
No 36
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=1.5e-05 Score=70.79 Aligned_cols=51 Identities=31% Similarity=0.770 Sum_probs=41.4
Q ss_pred CCcccccccccccccCceeeeeCCCCCccChHhHHH-HHhcCCC-CCCcCCCCcCCC
Q 044271 309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDE-WLRLNDK-CPVCRNSATPVH 363 (369)
Q Consensus 309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~-wl~~~~~-CP~Cr~~~~~~~ 363 (369)
..+..|+||++...... .++ |||+|.-.||-. |=+++.- ||+||+-..+..
T Consensus 213 ~~d~kC~lC~e~~~~ps---~t~-CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~ 265 (271)
T COG5574 213 LADYKCFLCLEEPEVPS---CTP-CGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK 265 (271)
T ss_pred ccccceeeeecccCCcc---ccc-ccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence 45789999999866543 366 999999999999 9877665 999999876653
No 37
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=7.2e-05 Score=70.19 Aligned_cols=50 Identities=32% Similarity=0.871 Sum_probs=39.0
Q ss_pred CcccccccccccccC-ceeeeeCCCCCccChHhHHHHHhc--CCCCCCcCCCC
Q 044271 310 NSSACPICLSEFLSQ-ETIRCIPECKHCFHAECIDEWLRL--NDKCPVCRNSA 359 (369)
Q Consensus 310 ~~~~C~ICL~~~~~~-~~~~~l~~C~H~fH~~Ci~~wl~~--~~~CP~Cr~~~ 359 (369)
.+..|+|||+.|... +.....+.|+|.|..+||+.||-+ ...||+|....
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~ka 55 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKA 55 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChh
Confidence 467999999999754 444445569999999999999943 35599998753
No 38
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.49 E-value=9.1e-05 Score=68.24 Aligned_cols=52 Identities=21% Similarity=0.577 Sum_probs=38.4
Q ss_pred cccccccccc-cccCce-eeeeCCCCCccChHhHHHHH-hcCCCCCCcCCCCcCCC
Q 044271 311 SSACPICLSE-FLSQET-IRCIPECKHCFHAECIDEWL-RLNDKCPVCRNSATPVH 363 (369)
Q Consensus 311 ~~~C~ICL~~-~~~~~~-~~~l~~C~H~fH~~Ci~~wl-~~~~~CP~Cr~~~~~~~ 363 (369)
+..|+||+.+ |-..+. +-+.+ |||.|+..|++..+ .....||.|+..+....
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~-CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~ 57 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGSGSCPECDTPLRKNN 57 (309)
T ss_pred CCCCCcCCCCCccCcccccccCC-CCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence 5689999997 444442 22234 99999999999955 55668999999876543
No 39
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=9.3e-05 Score=71.68 Aligned_cols=47 Identities=34% Similarity=0.748 Sum_probs=37.1
Q ss_pred cccccccccccccCceeeeeCCCCCccChHhHHHHHhc-----CCCCCCcCCCCcC
Q 044271 311 SSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL-----NDKCPVCRNSATP 361 (369)
Q Consensus 311 ~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~-----~~~CP~Cr~~~~~ 361 (369)
+..|+|||++-.... + +- |||+|+-.||-+++.. ...||+||..+..
T Consensus 186 ~~~CPICL~~~~~p~--~-t~-CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPV--R-TN-CGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCccc--c-cc-cCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 789999999854433 3 22 9999999999998843 5679999987765
No 40
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.00013 Score=67.66 Aligned_cols=49 Identities=29% Similarity=0.718 Sum_probs=39.8
Q ss_pred CCcccccccccccccCceeeeeCCCCCc-cChHhHHHHHhcCCCCCCcCCCCcC
Q 044271 309 PNSSACPICLSEFLSQETIRCIPECKHC-FHAECIDEWLRLNDKCPVCRNSATP 361 (369)
Q Consensus 309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~-fH~~Ci~~wl~~~~~CP~Cr~~~~~ 361 (369)
+...+|.|||.+-++ ..+|| |+|. .+..|.+.-.-+++.||+||+++.+
T Consensus 288 ~~gkeCVIClse~rd---t~vLP-CRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 288 ESGKECVICLSESRD---TVVLP-CRHLCLCSGCAKSLRYQTNNCPICRQPIEE 337 (349)
T ss_pred cCCCeeEEEecCCcc---eEEec-chhhehhHhHHHHHHHhhcCCCccccchHh
Confidence 457899999998444 55699 9986 5778999977789999999998754
No 41
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.33 E-value=0.00015 Score=52.93 Aligned_cols=49 Identities=20% Similarity=0.465 Sum_probs=37.1
Q ss_pred CcccccccccccccCceeeeeCCCCCccChHhHHHHHhc-CCCCCCcCCCCcCC
Q 044271 310 NSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL-NDKCPVCRNSATPV 362 (369)
Q Consensus 310 ~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~-~~~CP~Cr~~~~~~ 362 (369)
+...|+|+.+-|.+. |+ +| +||.|-+.+|..|+++ +.+||+++.++...
T Consensus 3 ~~f~CpIt~~lM~dP--Vi-~~-~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~ 52 (73)
T PF04564_consen 3 DEFLCPITGELMRDP--VI-LP-SGHTYERSAIERWLEQNGGTDPFTRQPLSES 52 (73)
T ss_dssp GGGB-TTTSSB-SSE--EE-ET-TSEEEEHHHHHHHHCTTSSB-TTT-SB-SGG
T ss_pred cccCCcCcCcHhhCc--ee-CC-cCCEEcHHHHHHHHHcCCCCCCCCCCcCCcc
Confidence 457899999987774 33 67 9999999999999998 89999999987654
No 42
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.21 E-value=7.7e-05 Score=75.07 Aligned_cols=51 Identities=29% Similarity=0.544 Sum_probs=45.8
Q ss_pred CCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCc
Q 044271 309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSAT 360 (369)
Q Consensus 309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~ 360 (369)
.....|++||..+.++......+ |+|.||..||+.|-+.-.+||+||.+..
T Consensus 121 ~~~~~CP~Ci~s~~DqL~~~~k~-c~H~FC~~Ci~sWsR~aqTCPiDR~EF~ 171 (1134)
T KOG0825|consen 121 HVENQCPNCLKSCNDQLEESEKH-TAHYFCEECVGSWSRCAQTCPVDRGEFG 171 (1134)
T ss_pred hhhhhhhHHHHHHHHHhhccccc-cccccHHHHhhhhhhhcccCchhhhhhh
Confidence 44578999999999998887777 9999999999999999999999998753
No 43
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.00017 Score=67.46 Aligned_cols=45 Identities=36% Similarity=0.789 Sum_probs=40.1
Q ss_pred CCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCC
Q 044271 309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRN 357 (369)
Q Consensus 309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~ 357 (369)
.+...|+||++.|.+. .++| |+|.|...|+..+......||.||.
T Consensus 11 ~~~~~C~iC~~~~~~p---~~l~-C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 11 QEELTCPICLEYFREP---VLLP-CGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred cccccChhhHHHhhcC---cccc-ccchHhHHHHHHhcCCCcCCcccCC
Confidence 4568999999999998 6788 9999999999999886678999993
No 44
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.00024 Score=66.88 Aligned_cols=52 Identities=27% Similarity=0.818 Sum_probs=41.2
Q ss_pred CCcccccccccccccCc----eeeeeCCCCCccChHhHHHHH--hc-----CCCCCCcCCCCc
Q 044271 309 PNSSACPICLSEFLSQE----TIRCIPECKHCFHAECIDEWL--RL-----NDKCPVCRNSAT 360 (369)
Q Consensus 309 ~~~~~C~ICL~~~~~~~----~~~~l~~C~H~fH~~Ci~~wl--~~-----~~~CP~Cr~~~~ 360 (369)
..+.+|.||+|...+.. .-+++|.|.|.|...||+.|- ++ .+.||.||....
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 45789999999866554 234567899999999999998 44 477999998643
No 45
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.09 E-value=0.00026 Score=63.50 Aligned_cols=48 Identities=29% Similarity=0.559 Sum_probs=39.9
Q ss_pred cccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcCC
Q 044271 311 SSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPV 362 (369)
Q Consensus 311 ~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~~ 362 (369)
-..|.||-+-+...- .++ |||.|+.-||+..|..+..||+||.+....
T Consensus 25 ~lrC~IC~~~i~ip~---~Tt-CgHtFCslCIR~hL~~qp~CP~Cr~~~~es 72 (391)
T COG5432 25 MLRCRICDCRISIPC---ETT-CGHTFCSLCIRRHLGTQPFCPVCREDPCES 72 (391)
T ss_pred HHHhhhhhheeecce---ecc-cccchhHHHHHHHhcCCCCCccccccHHhh
Confidence 479999998876532 244 999999999999999999999999976443
No 46
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.00023 Score=65.76 Aligned_cols=58 Identities=34% Similarity=0.689 Sum_probs=46.5
Q ss_pred CCcccccccccccccCceeeeeCCCCCccChHhHHHHHhc-CCCCCCcCCCCcCCCCCCCCC
Q 044271 309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL-NDKCPVCRNSATPVHASSVNP 369 (369)
Q Consensus 309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~-~~~CP~Cr~~~~~~~~~~~~~ 369 (369)
..+..|+|||+=++... ..++|.|-|+.+||..-++. ++.||.||+.+.+...-.++|
T Consensus 41 ~~~v~c~icl~llk~tm---ttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp 99 (381)
T KOG0311|consen 41 DIQVICPICLSLLKKTM---TTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDP 99 (381)
T ss_pred hhhhccHHHHHHHHhhc---ccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCc
Confidence 44789999999876644 35579999999999998854 788999999988776655554
No 47
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=96.73 E-value=0.00066 Score=62.32 Aligned_cols=48 Identities=31% Similarity=0.704 Sum_probs=41.4
Q ss_pred cccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcCC
Q 044271 311 SSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPV 362 (369)
Q Consensus 311 ~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~~ 362 (369)
-..|.||.|=|...- ++| |+|-|+.-||+..|..+..||+|+.+..+.
T Consensus 23 lLRC~IC~eyf~ip~---itp-CsHtfCSlCIR~~L~~~p~CP~C~~~~~Es 70 (442)
T KOG0287|consen 23 LLRCGICFEYFNIPM---ITP-CSHTFCSLCIRKFLSYKPQCPTCCVTVTES 70 (442)
T ss_pred HHHHhHHHHHhcCce---ecc-ccchHHHHHHHHHhccCCCCCceecccchh
Confidence 468999999887644 366 999999999999999999999999987554
No 48
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.00056 Score=56.14 Aligned_cols=32 Identities=28% Similarity=0.714 Sum_probs=28.5
Q ss_pred CCCcccccccccccccCceeeeeCCCCCccChH
Q 044271 308 GPNSSACPICLSEFLSQETIRCIPECKHCFHAE 340 (369)
Q Consensus 308 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~ 340 (369)
+.+.-+|.|||||+..++++..|| |-.+||+.
T Consensus 174 ~ddkGECvICLEdL~~GdtIARLP-CLCIYHK~ 205 (205)
T KOG0801|consen 174 KDDKGECVICLEDLEAGDTIARLP-CLCIYHKQ 205 (205)
T ss_pred cccCCcEEEEhhhccCCCceeccc-eEEEeecC
Confidence 445579999999999999999999 99999973
No 49
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=96.64 E-value=0.0005 Score=62.09 Aligned_cols=50 Identities=32% Similarity=0.758 Sum_probs=42.4
Q ss_pred cccccccccccccCceeeeeCCCCCccChHhHHHHHhc-----------------------CCCCCCcCCCCcC
Q 044271 311 SSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL-----------------------NDKCPVCRNSATP 361 (369)
Q Consensus 311 ~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~-----------------------~~~CP~Cr~~~~~ 361 (369)
.-.|.|||=-|.+++....++ |-|.||..|+..+|.. ...||+||..|..
T Consensus 115 ~gqCvICLygfa~~~~ft~T~-C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTA-CDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred CCceEEEEEeecCCCceeeeh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 468999999999999988898 9999999999988741 3469999987643
No 50
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.0005 Score=45.65 Aligned_cols=46 Identities=26% Similarity=0.592 Sum_probs=31.4
Q ss_pred cccccccccccccCceeeeeCCCCCcc-ChHhH-HHHHhcCCCCCCcCCCCc
Q 044271 311 SSACPICLSEFLSQETIRCIPECKHCF-HAECI-DEWLRLNDKCPVCRNSAT 360 (369)
Q Consensus 311 ~~~C~ICL~~~~~~~~~~~l~~C~H~f-H~~Ci-~~wl~~~~~CP~Cr~~~~ 360 (369)
+++|.||+|.=. +.|..+ |||.- .-+|- +.|-..+..||+||+++.
T Consensus 7 ~dECTICye~pv--dsVlYt--CGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 7 SDECTICYEHPV--DSVLYT--CGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred ccceeeeccCcc--hHHHHH--cchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 489999999733 333333 99873 33454 445447889999999874
No 51
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.0013 Score=59.57 Aligned_cols=50 Identities=24% Similarity=0.452 Sum_probs=40.0
Q ss_pred CCcccccccccccccCceeeeeCCCCCccChHhHHHHHhc-CCCCCCcCCCCcCC
Q 044271 309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL-NDKCPVCRNSATPV 362 (369)
Q Consensus 309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~-~~~CP~Cr~~~~~~ 362 (369)
....+|+||+...... ..|+ |+|.|.--||..-.+. ..+|++||.++.+.
T Consensus 5 ~~~~eC~IC~nt~n~P---v~l~-C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 5 TKKKECLICYNTGNCP---VNLY-CFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred ccCCcceeeeccCCcC---cccc-ccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 3457999999986655 3477 9999999999987755 55699999998654
No 52
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=96.55 E-value=0.00087 Score=53.93 Aligned_cols=36 Identities=22% Similarity=0.609 Sum_probs=30.7
Q ss_pred cccccccccccccCceeeeeCCCC------CccChHhHHHHHh
Q 044271 311 SSACPICLSEFLSQETIRCIPECK------HCFHAECIDEWLR 347 (369)
Q Consensus 311 ~~~C~ICL~~~~~~~~~~~l~~C~------H~fH~~Ci~~wl~ 347 (369)
..+|+||++...+.+.|..++ |+ |.||.+|+..|-+
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt-~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVT-DGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEe-cCCeehHHHHHHHHHHHHHHh
Confidence 579999999999977777777 64 9999999999943
No 53
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.47 E-value=0.0017 Score=44.67 Aligned_cols=42 Identities=33% Similarity=0.736 Sum_probs=28.4
Q ss_pred CcccccccccccccCceeeeeCCCCCccChHhHHHHHhc--CCCCCC
Q 044271 310 NSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL--NDKCPV 354 (369)
Q Consensus 310 ~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~--~~~CP~ 354 (369)
....|+|.+..|++ .|+... |+|.|-++.|.+|+++ ...||+
T Consensus 10 ~~~~CPiT~~~~~~--PV~s~~-C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFED--PVKSKK-CGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SS--EEEESS-S--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhC--CcCcCC-CCCeecHHHHHHHHHhcCCCCCCC
Confidence 35799999998764 677666 9999999999999944 456998
No 54
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=96.46 E-value=0.00072 Score=46.96 Aligned_cols=46 Identities=28% Similarity=0.696 Sum_probs=22.8
Q ss_pred ccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcCC
Q 044271 312 SACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPV 362 (369)
Q Consensus 312 ~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~~ 362 (369)
..|++|.+-+++.- - +..|.|+|...||..-+. ..||+|+.+.-..
T Consensus 8 LrCs~C~~~l~~pv--~-l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~q 53 (65)
T PF14835_consen 8 LRCSICFDILKEPV--C-LGGCEHIFCSSCIRDCIG--SECPVCHTPAWIQ 53 (65)
T ss_dssp TS-SSS-S--SS-B------SSS--B-TTTGGGGTT--TB-SSS--B-S-S
T ss_pred cCCcHHHHHhcCCc--e-eccCccHHHHHHhHHhcC--CCCCCcCChHHHH
Confidence 57999999866543 3 334999999999988543 4599999887443
No 55
>PHA02862 5L protein; Provisional
Probab=96.40 E-value=0.0024 Score=51.63 Aligned_cols=45 Identities=22% Similarity=0.600 Sum_probs=34.2
Q ss_pred cccccccccccccCceeeeeCCC-----CCccChHhHHHHHhc--CCCCCCcCCCCc
Q 044271 311 SSACPICLSEFLSQETIRCIPEC-----KHCFHAECIDEWLRL--NDKCPVCRNSAT 360 (369)
Q Consensus 311 ~~~C~ICL~~~~~~~~~~~l~~C-----~H~fH~~Ci~~wl~~--~~~CP~Cr~~~~ 360 (369)
++.|-||+++-++. + -| | ....|.+|+.+|++. +..||+|+.+..
T Consensus 2 ~diCWIC~~~~~e~--~--~P-C~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 2 SDICWICNDVCDER--N--NF-CGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred CCEEEEecCcCCCC--c--cc-ccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 46899999985433 2 34 5 367899999999964 567999998753
No 56
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.0036 Score=54.33 Aligned_cols=54 Identities=28% Similarity=0.640 Sum_probs=45.9
Q ss_pred CCcccccccccccccCceeeeeCCCCCccChHhHHHHHhc--------CCCCCCcCCCCcCCCC
Q 044271 309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL--------NDKCPVCRNSATPVHA 364 (369)
Q Consensus 309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~--------~~~CP~Cr~~~~~~~~ 364 (369)
+....|..|--.+..+|.+|.. |=|.||-+|++.|-.. ...||-|..++.+...
T Consensus 48 DY~pNC~LC~t~La~gdt~RLv--CyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~N 109 (299)
T KOG3970|consen 48 DYNPNCRLCNTPLASGDTTRLV--CYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPIN 109 (299)
T ss_pred CCCCCCceeCCccccCcceeeh--hhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCcc
Confidence 3457999999999999999966 9999999999999853 4569999999987643
No 57
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=96.17 E-value=0.0036 Score=41.10 Aligned_cols=45 Identities=29% Similarity=0.685 Sum_probs=22.5
Q ss_pred ccccccccccCceeeeeC-CCCCccChHhHHHHHh-cCCCCCCcCCCC
Q 044271 314 CPICLSEFLSQETIRCIP-ECKHCFHAECIDEWLR-LNDKCPVCRNSA 359 (369)
Q Consensus 314 C~ICL~~~~~~~~~~~l~-~C~H~fH~~Ci~~wl~-~~~~CP~Cr~~~ 359 (369)
|++|.+++...+ ....| +|++.+...|...-++ .+..||-||.+.
T Consensus 1 cp~C~e~~d~~d-~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETD-KDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCC-TT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCC-CccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 789999993333 34455 4789999999888775 578899999864
No 58
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=96.16 E-value=0.0036 Score=67.13 Aligned_cols=64 Identities=28% Similarity=0.563 Sum_probs=48.1
Q ss_pred ccceeeccCCCCCCCCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcC----------CCCCCcCCCCc
Q 044271 295 FQKLVLGESKRLPGPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLN----------DKCPVCRNSAT 360 (369)
Q Consensus 295 ~p~~~~~~~~~~~~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~----------~~CP~Cr~~~~ 360 (369)
+|-+..+++.. ..+.++.|-||.-|--.....+.|. |+|+||-.|.+.-|+.+ .+||+|+.++.
T Consensus 3471 LPCl~Cdks~t-kQD~DDmCmICFTE~L~AAP~IqL~-C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3471 LPCLHCDKSAT-KQDADDMCMICFTEALSAAPAIQLD-CSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred ccccccChhhh-hcccCceEEEEehhhhCCCcceecC-CccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 44444333222 2566899999999988888888897 99999999999877542 36999998763
No 59
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=95.95 E-value=0.0055 Score=40.40 Aligned_cols=40 Identities=38% Similarity=1.017 Sum_probs=27.3
Q ss_pred ccccccccccCceeeeeCCCC-----CccChHhHHHHHh--cCCCCCCc
Q 044271 314 CPICLSEFLSQETIRCIPECK-----HCFHAECIDEWLR--LNDKCPVC 355 (369)
Q Consensus 314 C~ICL~~~~~~~~~~~l~~C~-----H~fH~~Ci~~wl~--~~~~CP~C 355 (369)
|-||+++-.+.+.+ +.| |+ -..|..|+..|++ .+.+|++|
T Consensus 1 CrIC~~~~~~~~~l-i~p-C~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPL-ISP-CRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-E-E-S-SS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCce-ecc-cccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 67999997777633 355 62 4779999999996 45779987
No 60
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=95.94 E-value=0.0074 Score=49.91 Aligned_cols=49 Identities=29% Similarity=0.712 Sum_probs=35.3
Q ss_pred CCCcccccccccccccCceeeeeC-CCCC---ccChHhHHHHHhc--CCCCCCcCCCCc
Q 044271 308 GPNSSACPICLSEFLSQETIRCIP-ECKH---CFHAECIDEWLRL--NDKCPVCRNSAT 360 (369)
Q Consensus 308 ~~~~~~C~ICL~~~~~~~~~~~l~-~C~H---~fH~~Ci~~wl~~--~~~CP~Cr~~~~ 360 (369)
...+..|-||.++.. +.. .| .|.. ..|.+|++.|+.. ..+|++|+++..
T Consensus 5 s~~~~~CRIC~~~~~--~~~--~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 5 SLMDKCCWICKDEYD--VVT--NYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCCCeeEecCCCCC--Ccc--CCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 345789999999853 232 35 1333 6699999999965 566999998753
No 61
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=95.89 E-value=0.0029 Score=59.35 Aligned_cols=51 Identities=24% Similarity=0.677 Sum_probs=40.2
Q ss_pred CCcccccccccccccCceeeeeCCCCCccChHhHHHHHhc--CCCCCCcCCCCcCCC
Q 044271 309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL--NDKCPVCRNSATPVH 363 (369)
Q Consensus 309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~--~~~CP~Cr~~~~~~~ 363 (369)
..-..|-||-|.- ..|++-| |||..+..|+..|-.. ...||.||.++-..+
T Consensus 367 sTFeLCKICaend---KdvkIEP-CGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte 419 (563)
T KOG1785|consen 367 STFELCKICAEND---KDVKIEP-CGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTE 419 (563)
T ss_pred chHHHHHHhhccC---CCccccc-ccchHHHHHHHhhcccCCCCCCCceeeEecccc
Confidence 3457999998863 3477788 9999999999999633 578999999875543
No 62
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.86 E-value=0.0028 Score=59.37 Aligned_cols=47 Identities=32% Similarity=0.793 Sum_probs=39.9
Q ss_pred CCcccccccccccccCc-eeeeeCCCCCccChHhHHHHHhcC--CCCCCcC
Q 044271 309 PNSSACPICLSEFLSQE-TIRCIPECKHCFHAECIDEWLRLN--DKCPVCR 356 (369)
Q Consensus 309 ~~~~~C~ICL~~~~~~~-~~~~l~~C~H~fH~~Ci~~wl~~~--~~CP~Cr 356 (369)
+.+..|-.|-|.+..++ .+..|| |.|+||..|+...|+++ .+||-||
T Consensus 363 e~~L~Cg~CGe~~Glk~e~LqALp-CsHIfH~rCl~e~L~~n~~rsCP~Cr 412 (518)
T KOG1941|consen 363 ETELYCGLCGESIGLKNERLQALP-CSHIFHLRCLQEILENNGTRSCPNCR 412 (518)
T ss_pred HHhhhhhhhhhhhcCCcccccccc-hhHHHHHHHHHHHHHhCCCCCCccHH
Confidence 44679999999987664 567788 99999999999999765 6799999
No 63
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=95.10 E-value=0.017 Score=59.41 Aligned_cols=51 Identities=27% Similarity=0.730 Sum_probs=42.7
Q ss_pred CCCcccccccccccccCceeeeeCCCCCccChHhHHHHHhc-------CCCCCCcCCC
Q 044271 308 GPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL-------NDKCPVCRNS 358 (369)
Q Consensus 308 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~-------~~~CP~Cr~~ 358 (369)
.....+|.||.+.++..+.+....-|=|+||-.||..|.+. ..+||-|+..
T Consensus 188 ~~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv 245 (950)
T KOG1952|consen 188 SNRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSV 245 (950)
T ss_pred hcCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccch
Confidence 34457999999999999988777778899999999999964 3569999854
No 64
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=95.03 E-value=0.024 Score=38.10 Aligned_cols=35 Identities=29% Similarity=0.801 Sum_probs=31.5
Q ss_pred CcccccccccccccCceeeeeCCCCCccChHhHHH
Q 044271 310 NSSACPICLSEFLSQETIRCIPECKHCFHAECIDE 344 (369)
Q Consensus 310 ~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~ 344 (369)
....|.+|-++|++++.+.+.|.|+-.+|++|.+.
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 45789999999999999999999999999999765
No 65
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=94.92 E-value=0.014 Score=56.71 Aligned_cols=53 Identities=36% Similarity=0.704 Sum_probs=44.0
Q ss_pred CCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcCCCC
Q 044271 309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPVHA 364 (369)
Q Consensus 309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~~~~ 364 (369)
..+..|+||...+.+.-.. .. |||.|...|+..|+..+..||.|+.++..+..
T Consensus 19 ~~~l~C~~C~~vl~~p~~~--~~-cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~ 71 (391)
T KOG0297|consen 19 DENLLCPICMSVLRDPVQT--TT-CGHRFCAGCLLESLSNHQKCPVCRQELTQAEE 71 (391)
T ss_pred cccccCccccccccCCCCC--CC-CCCcccccccchhhccCcCCcccccccchhhc
Confidence 4468999999997776543 34 99999999999999999999999998766543
No 66
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=94.82 E-value=0.018 Score=38.72 Aligned_cols=45 Identities=20% Similarity=0.448 Sum_probs=33.8
Q ss_pred cccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcCCC
Q 044271 313 ACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPVH 363 (369)
Q Consensus 313 ~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~~~ 363 (369)
.|-.|.. .+.+...+| |+|.....|.+.+ +-+-||+|-++++.+.
T Consensus 9 ~~~~~~~---~~~~~~~~p-CgH~I~~~~f~~~--rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 9 PCVFCGF---VGTKGTVLP-CGHLICDNCFPGE--RYNGCPFCGTPFEFDD 53 (55)
T ss_pred eEEEccc---ccccccccc-ccceeeccccChh--hccCCCCCCCcccCCC
Confidence 4444443 344456687 9999999999985 7788999999987764
No 67
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.31 E-value=0.021 Score=53.37 Aligned_cols=46 Identities=33% Similarity=0.669 Sum_probs=34.1
Q ss_pred CCCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCc
Q 044271 308 GPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSAT 360 (369)
Q Consensus 308 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~ 360 (369)
....+.|.||+++.++ ...+| |||.=. |..- .+....||+||+.+.
T Consensus 302 ~~~p~lcVVcl~e~~~---~~fvp-cGh~cc--ct~c-s~~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 302 LPQPDLCVVCLDEPKS---AVFVP-CGHVCC--CTLC-SKHLPQCPVCRQRIR 347 (355)
T ss_pred cCCCCceEEecCCccc---eeeec-CCcEEE--chHH-HhhCCCCchhHHHHH
Confidence 4456899999999776 55688 999943 4443 455667999998764
No 68
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.27 E-value=0.0033 Score=58.93 Aligned_cols=52 Identities=25% Similarity=0.580 Sum_probs=46.2
Q ss_pred cccccccccccccC-ceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcCCC
Q 044271 311 SSACPICLSEFLSQ-ETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPVH 363 (369)
Q Consensus 311 ~~~C~ICL~~~~~~-~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~~~ 363 (369)
...|+||-+.|+.. +++..+. |||++|.+|+..||.....||.||+++.-..
T Consensus 196 v~sl~I~~~slK~~y~k~~~~~-~g~~~~~~kL~k~L~~~~kl~~~~rel~~~~ 248 (465)
T KOG0827|consen 196 VGSLSICFESLKQNYDKISAIV-CGHIYHHGKLSKWLATKRKLPSCRRELPKNG 248 (465)
T ss_pred HhhhHhhHHHHHHHHHHHHHHh-hcccchhhHHHHHHHHHHHhHHHHhhhhhhh
Confidence 35899999999988 7888887 9999999999999999999999999886543
No 69
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=94.03 E-value=0.038 Score=35.61 Aligned_cols=41 Identities=24% Similarity=0.686 Sum_probs=24.1
Q ss_pred ccccccccccCceeeeeCCCCCccChHhHHHHHhcCC--CCCCc
Q 044271 314 CPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLND--KCPVC 355 (369)
Q Consensus 314 C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~--~CP~C 355 (369)
|.+|-+-...|....... |+--+|..|++.+++... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~-C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRD-CNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS---S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCc-cCchHHHHHHHHHHhcCCCCCCcCC
Confidence 667777776766655443 888999999999997765 79987
No 70
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=94.00 E-value=0.023 Score=44.50 Aligned_cols=33 Identities=27% Similarity=0.695 Sum_probs=27.3
Q ss_pred CCcccccccccccccCceeeeeCCCCCccChHhHH
Q 044271 309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECID 343 (369)
Q Consensus 309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~ 343 (369)
..+..|++|-..+.. ......| |||+||..|++
T Consensus 76 ~~~~~C~vC~k~l~~-~~f~~~p-~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGN-SVFVVFP-CGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCC-ceEEEeC-CCeEEeccccc
Confidence 346789999999887 4566678 99999999975
No 71
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.94 E-value=0.037 Score=53.46 Aligned_cols=49 Identities=29% Similarity=0.735 Sum_probs=40.3
Q ss_pred CCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcC
Q 044271 309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATP 361 (369)
Q Consensus 309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~ 361 (369)
..+.+|.||+.-+...- .+| |||.|...||+.-+.+..-||+||.++..
T Consensus 82 ~sef~c~vc~~~l~~pv---~tp-cghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPV---VTP-CGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCCc---ccc-ccccccHHHHHHHhccCCCCccccccccc
Confidence 45789999977765533 357 99999999999988878889999998864
No 72
>PHA03096 p28-like protein; Provisional
Probab=93.75 E-value=0.033 Score=51.42 Aligned_cols=46 Identities=28% Similarity=0.552 Sum_probs=35.0
Q ss_pred ccccccccccccCc----eeeeeCCCCCccChHhHHHHHhc---CCCCCCcCC
Q 044271 312 SACPICLSEFLSQE----TIRCIPECKHCFHAECIDEWLRL---NDKCPVCRN 357 (369)
Q Consensus 312 ~~C~ICL~~~~~~~----~~~~l~~C~H~fH~~Ci~~wl~~---~~~CP~Cr~ 357 (369)
.+|.||+|...... .-..|+.|.|.|...|++.|... ...||.||.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 68999999977643 33578889999999999999854 344555554
No 73
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=93.62 E-value=0.028 Score=57.56 Aligned_cols=47 Identities=23% Similarity=0.627 Sum_probs=36.4
Q ss_pred cccccccccccccCceeeeeCCCCCccChHhHHHHHh-cCCCCCCcCCCCcC
Q 044271 311 SSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLR-LNDKCPVCRNSATP 361 (369)
Q Consensus 311 ~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~-~~~~CP~Cr~~~~~ 361 (369)
-..|+.|-...++.- +. +|+|+|+..|+..-+. ++..||.|....-+
T Consensus 643 ~LkCs~Cn~R~Kd~v---I~-kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFga 690 (698)
T KOG0978|consen 643 LLKCSVCNTRWKDAV---IT-KCGHVFCEECVQTRYETRQRKCPKCNAAFGA 690 (698)
T ss_pred ceeCCCccCchhhHH---HH-hcchHHHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 368999997765532 23 3999999999999995 57789999886544
No 74
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.14 E-value=0.09 Score=46.54 Aligned_cols=52 Identities=15% Similarity=0.349 Sum_probs=47.2
Q ss_pred CcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcC
Q 044271 310 NSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATP 361 (369)
Q Consensus 310 ~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~ 361 (369)
....|+||.+.+.....+..|.+|||+|..+|++..+++...||+|-.++..
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkd 271 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKD 271 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcc
Confidence 4579999999999999999999999999999999999999999999777643
No 75
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.51 E-value=0.18 Score=45.49 Aligned_cols=51 Identities=24% Similarity=0.559 Sum_probs=39.5
Q ss_pred CCCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcC--CCCCCcCCCCcC
Q 044271 308 GPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLN--DKCPVCRNSATP 361 (369)
Q Consensus 308 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~--~~CP~Cr~~~~~ 361 (369)
...+.+|++|-+. .-.+....+ |+|+|+--||..=+... -+||.|-.+..+
T Consensus 236 ~t~~~~C~~Cg~~--PtiP~~~~~-C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~ 288 (298)
T KOG2879|consen 236 GTSDTECPVCGEP--PTIPHVIGK-CGHIYCYYCIATSRLWDASFTCPLCGENVEP 288 (298)
T ss_pred ccCCceeeccCCC--CCCCeeecc-ccceeehhhhhhhhcchhhcccCccCCCCcc
Confidence 4457899999987 333445566 99999999999977654 679999887763
No 76
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=92.14 E-value=0.12 Score=47.78 Aligned_cols=48 Identities=23% Similarity=0.560 Sum_probs=37.7
Q ss_pred CCCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCC
Q 044271 308 GPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNS 358 (369)
Q Consensus 308 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~ 358 (369)
..+...|+||+..-+..-.+. . -|-+|+-.|+-+.+..+..||+=-.+
T Consensus 297 ~~~~~~CpvClk~r~Nptvl~-v--SGyVfCY~Ci~~Yv~~~~~CPVT~~p 344 (357)
T KOG0826|consen 297 PPDREVCPVCLKKRQNPTVLE-V--SGYVFCYPCIFSYVVNYGHCPVTGYP 344 (357)
T ss_pred CCccccChhHHhccCCCceEE-e--cceEEeHHHHHHHHHhcCCCCccCCc
Confidence 456789999999866554432 2 58999999999999999999975444
No 77
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=92.04 E-value=0.21 Score=46.48 Aligned_cols=51 Identities=24% Similarity=0.569 Sum_probs=37.3
Q ss_pred CCCCcccccccccccccCceeeeeCCCCCccChHhHHHH--HhcCCCCCCcCCCCcC
Q 044271 307 PGPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEW--LRLNDKCPVCRNSATP 361 (369)
Q Consensus 307 ~~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~w--l~~~~~CP~Cr~~~~~ 361 (369)
..++...|-||-+... -...+| |+|..+..|--.. |-..+.||+||.+-+.
T Consensus 57 tDEen~~C~ICA~~~T---Ys~~~P-C~H~~CH~Ca~RlRALY~~K~C~~CrTE~e~ 109 (493)
T COG5236 57 TDEENMNCQICAGSTT---YSARYP-CGHQICHACAVRLRALYMQKGCPLCRTETEA 109 (493)
T ss_pred cccccceeEEecCCce---EEEecc-CCchHHHHHHHHHHHHHhccCCCccccccce
Confidence 3556789999988643 345677 9999888886542 3457889999997443
No 78
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=92.03 E-value=0.063 Score=45.85 Aligned_cols=45 Identities=27% Similarity=0.594 Sum_probs=37.9
Q ss_pred cccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCC
Q 044271 311 SSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSA 359 (369)
Q Consensus 311 ~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~ 359 (369)
...|.||-++|+..-. .. |||.|+..|...=+++...|-+|-...
T Consensus 196 PF~C~iCKkdy~spvv---t~-CGH~FC~~Cai~~y~kg~~C~~Cgk~t 240 (259)
T COG5152 196 PFLCGICKKDYESPVV---TE-CGHSFCSLCAIRKYQKGDECGVCGKAT 240 (259)
T ss_pred ceeehhchhhccchhh---hh-cchhHHHHHHHHHhccCCcceecchhh
Confidence 4699999999987532 33 999999999999999999999997653
No 79
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=91.84 E-value=0.077 Score=51.94 Aligned_cols=54 Identities=24% Similarity=0.495 Sum_probs=40.6
Q ss_pred CCCcccccccccccccCceeeeeCCCCCccChHhHHHHHhc-----CCCCCCcCCCCcCCCCC
Q 044271 308 GPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL-----NDKCPVCRNSATPVHAS 365 (369)
Q Consensus 308 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~-----~~~CP~Cr~~~~~~~~~ 365 (369)
.....+|-+|-++-++--. .. |.|.|++.||..++.. +-+||+|...|....++
T Consensus 533 nk~~~~C~lc~d~aed~i~---s~-ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse 591 (791)
T KOG1002|consen 533 NKGEVECGLCHDPAEDYIE---SS-CHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSE 591 (791)
T ss_pred ccCceeecccCChhhhhHh---hh-hhHHHHHHHHHHHHHhhhcccCCCCccccccccccccc
Confidence 3456799999998555333 44 9999999999888853 57799999887655433
No 80
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.63 E-value=0.12 Score=43.39 Aligned_cols=50 Identities=34% Similarity=0.735 Sum_probs=33.1
Q ss_pred ccccccccccccCc----eeeeeCCCCCccChHhHHHHHhcC-----------CCCCCcCCCCcCC
Q 044271 312 SACPICLSEFLSQE----TIRCIPECKHCFHAECIDEWLRLN-----------DKCPVCRNSATPV 362 (369)
Q Consensus 312 ~~C~ICL~~~~~~~----~~~~l~~C~H~fH~~Ci~~wl~~~-----------~~CP~Cr~~~~~~ 362 (369)
-.|.||..---+|. ..-... ||..||.-|+..||+.- ..||.|..++.-.
T Consensus 166 ~~cgicyayqldGTipDqtCdN~q-CgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK 230 (234)
T KOG3268|consen 166 GACGICYAYQLDGTIPDQTCDNIQ-CGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK 230 (234)
T ss_pred hcccceeeeecCCccccccccccc-cCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence 35666664322221 222333 99999999999999641 2499999987543
No 81
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=91.29 E-value=0.12 Score=47.30 Aligned_cols=46 Identities=26% Similarity=0.676 Sum_probs=38.7
Q ss_pred ccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCC
Q 044271 312 SACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRN 357 (369)
Q Consensus 312 ~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~ 357 (369)
..|+||.+.+-.........+|+|.-|..|++.....+-+||+|..
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred CCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 3599999998877755433349999999999999988899999987
No 82
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.13 E-value=0.11 Score=49.39 Aligned_cols=46 Identities=28% Similarity=0.737 Sum_probs=37.8
Q ss_pred cccccccccccccCceeeeeCCCCCccChHhHHHHHhc--------CCCCCCcCC
Q 044271 311 SSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL--------NDKCPVCRN 357 (369)
Q Consensus 311 ~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~--------~~~CP~Cr~ 357 (369)
-..|.||.++..-......+| |+|+|.+.|+..++.. .-.||-++-
T Consensus 184 lf~C~ICf~e~~G~~c~~~lp-C~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLP-CSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred cccceeeehhhcCcceeeecc-cchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 469999999977778889999 9999999999999854 235876544
No 83
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.87 E-value=0.25 Score=46.07 Aligned_cols=52 Identities=27% Similarity=0.625 Sum_probs=41.5
Q ss_pred CCCCCCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCc
Q 044271 305 RLPGPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSAT 360 (369)
Q Consensus 305 ~~~~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~ 360 (369)
..+..+++.|+||... ...-...| |+|.=+..||.+-|...+.|=.|+..+.
T Consensus 416 ~lp~sEd~lCpICyA~---pi~Avf~P-C~H~SC~~CI~qHlmN~k~CFfCktTv~ 467 (489)
T KOG4692|consen 416 DLPDSEDNLCPICYAG---PINAVFAP-CSHRSCYGCITQHLMNCKRCFFCKTTVI 467 (489)
T ss_pred CCCCcccccCcceecc---cchhhccC-CCCchHHHHHHHHHhcCCeeeEecceee
Confidence 4446678999999875 22223466 9999999999999999999999998654
No 84
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=89.40 E-value=0.11 Score=42.86 Aligned_cols=39 Identities=15% Similarity=0.202 Sum_probs=23.0
Q ss_pred CCCCCCchhhhHHHHHHHHHHHHHHHhhhhceecccccc
Q 044271 225 GGSNGGLQVFRILALSIAIPALICASAIGICACCTDRSR 263 (369)
Q Consensus 225 ~~~~~~~~~~~ii~l~i~~~~l~~~~~~~~~~~~~~R~~ 263 (369)
+.+.+...+++.+++++++++++.++++++++|+++|+.
T Consensus 42 GlS~knknIVIGvVVGVGg~ill~il~lvf~~c~r~kkt 80 (154)
T PF04478_consen 42 GLSSKNKNIVIGVVVGVGGPILLGILALVFIFCIRRKKT 80 (154)
T ss_pred CCCcCCccEEEEEEecccHHHHHHHHHhheeEEEecccC
Confidence 445555566666677777766666555555555444443
No 85
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.03 E-value=0.18 Score=52.26 Aligned_cols=45 Identities=27% Similarity=0.610 Sum_probs=34.5
Q ss_pred cccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcC
Q 044271 311 SSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATP 361 (369)
Q Consensus 311 ~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~ 361 (369)
...|..|--..+... ..-. |+|.||.+|+. .+...||-|+.++..
T Consensus 840 ~skCs~C~~~LdlP~--VhF~-CgHsyHqhC~e---~~~~~CP~C~~e~~~ 884 (933)
T KOG2114|consen 840 VSKCSACEGTLDLPF--VHFL-CGHSYHQHCLE---DKEDKCPKCLPELRG 884 (933)
T ss_pred eeeecccCCccccce--eeee-cccHHHHHhhc---cCcccCCccchhhhh
Confidence 478999988766543 3444 99999999999 567789999986543
No 86
>PF04641 Rtf2: Rtf2 RING-finger
Probab=88.92 E-value=0.46 Score=43.59 Aligned_cols=53 Identities=25% Similarity=0.546 Sum_probs=42.9
Q ss_pred CCCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcC
Q 044271 308 GPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATP 361 (369)
Q Consensus 308 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~ 361 (369)
......|+|...+|........+..|||+|-..+|..- +....||+|-.+...
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~~~~Cp~c~~~f~~ 162 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KKSKKCPVCGKPFTE 162 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-cccccccccCCcccc
Confidence 35568999999999777677777669999999999996 346679999887653
No 87
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=88.52 E-value=0.11 Score=48.13 Aligned_cols=48 Identities=29% Similarity=0.663 Sum_probs=40.3
Q ss_pred CcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCc
Q 044271 310 NSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSAT 360 (369)
Q Consensus 310 ~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~ 360 (369)
....|.+|-.=+.+...+. +|-|-|++.||-..|+....||.|...+-
T Consensus 14 ~~itC~LC~GYliDATTI~---eCLHTFCkSCivk~l~~~~~CP~C~i~ih 61 (331)
T KOG2660|consen 14 PHITCRLCGGYLIDATTIT---ECLHTFCKSCIVKYLEESKYCPTCDIVIH 61 (331)
T ss_pred cceehhhccceeecchhHH---HHHHHHHHHHHHHHHHHhccCCccceecc
Confidence 4578999988777776643 59999999999999999999999987653
No 88
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=88.39 E-value=0.49 Score=29.25 Aligned_cols=29 Identities=17% Similarity=0.376 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHhhhhceecccccccc
Q 044271 237 LALSIAIPALICASAIGICACCTDRSRLG 265 (369)
Q Consensus 237 i~l~i~~~~l~~~~~~~~~~~~~~R~~~~ 265 (369)
++.++.+.+.++++.++.|.|+.+|.+++
T Consensus 8 IIv~V~vg~~iiii~~~~YaCcykk~~~~ 36 (38)
T PF02439_consen 8 IIVAVVVGMAIIIICMFYYACCYKKHRRQ 36 (38)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccccc
Confidence 33444444555555555566665555543
No 89
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=88.18 E-value=1.1 Score=35.68 Aligned_cols=22 Identities=14% Similarity=0.086 Sum_probs=16.0
Q ss_pred CeeecccCCCcceEeecCCCCCC
Q 044271 204 QICGFKSRNSQEIGCFNNSKPGG 226 (369)
Q Consensus 204 G~Cg~~~~~~~~~~C~~~~~~~~ 226 (369)
|.|.|-.+. .+..|.|..+-.+
T Consensus 56 G~C~yI~dl-~~~~CrC~~GYtG 77 (139)
T PHA03099 56 GDCIHARDI-DGMYCRCSHGYTG 77 (139)
T ss_pred CEEEeeccC-CCceeECCCCccc
Confidence 589988654 4899999775443
No 90
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.81 E-value=0.26 Score=44.95 Aligned_cols=46 Identities=26% Similarity=0.520 Sum_probs=38.7
Q ss_pred cccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCc
Q 044271 311 SSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSAT 360 (369)
Q Consensus 311 ~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~ 360 (369)
.+.|-||...|...-. .. |+|.|...|...=+++...|++|.+..-
T Consensus 241 Pf~c~icr~~f~~pVv---t~-c~h~fc~~ca~~~~qk~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVV---TK-CGHYFCEVCALKPYQKGEKCYVCSQQTH 286 (313)
T ss_pred Cccccccccccccchh---hc-CCceeehhhhccccccCCcceecccccc
Confidence 4689999999887543 33 9999999999999999999999987643
No 91
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=85.99 E-value=0.47 Score=48.65 Aligned_cols=22 Identities=45% Similarity=1.115 Sum_probs=20.9
Q ss_pred CCCccChHhHHHHHhcCCCCCC
Q 044271 333 CKHCFHAECIDEWLRLNDKCPV 354 (369)
Q Consensus 333 C~H~fH~~Ci~~wl~~~~~CP~ 354 (369)
|+|+-|.+|...|++....||.
T Consensus 1048 C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1048 CGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred ccccccHHHHHHHHhcCCcCCC
Confidence 9999999999999999999983
No 92
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=84.71 E-value=0.45 Score=30.95 Aligned_cols=29 Identities=28% Similarity=0.818 Sum_probs=21.9
Q ss_pred C-CCccChHhHHHHHhcCCCCCCcCCCCcC
Q 044271 333 C-KHCFHAECIDEWLRLNDKCPVCRNSATP 361 (369)
Q Consensus 333 C-~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~ 361 (369)
| .|.....|+...|.....||+|..++..
T Consensus 18 C~dHYLCl~CLt~ml~~s~~C~iC~~~LPt 47 (50)
T PF03854_consen 18 CSDHYLCLNCLTLMLSRSDRCPICGKPLPT 47 (50)
T ss_dssp -SS-EEEHHHHHHT-SSSSEETTTTEE---
T ss_pred ecchhHHHHHHHHHhccccCCCcccCcCcc
Confidence 7 6999999999999999999999998764
No 93
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=83.94 E-value=1 Score=41.18 Aligned_cols=46 Identities=35% Similarity=0.761 Sum_probs=33.9
Q ss_pred cccccccccccccCceeeeeCCCCCccChHhHHHHHh-cCCCCCCcCC-CC
Q 044271 311 SSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLR-LNDKCPVCRN-SA 359 (369)
Q Consensus 311 ~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~-~~~~CP~Cr~-~~ 359 (369)
...|+.|-.-... .++. |.|+|-|.++||..-|. ....||.|.+ ++
T Consensus 274 ~LkCplc~~Llrn--p~kT-~cC~~~fc~eci~~al~dsDf~CpnC~rkdv 321 (427)
T COG5222 274 SLKCPLCHCLLRN--PMKT-PCCGHTFCDECIGTALLDSDFKCPNCSRKDV 321 (427)
T ss_pred cccCcchhhhhhC--cccC-ccccchHHHHHHhhhhhhccccCCCcccccc
Confidence 3789888765443 3343 67999999999998775 5788999944 44
No 94
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.83 E-value=0.79 Score=42.81 Aligned_cols=48 Identities=27% Similarity=0.670 Sum_probs=38.1
Q ss_pred cccccccccccccCcee---eeeCCCCCccChHhHHHHHhc-CCCCCCcCCCC
Q 044271 311 SSACPICLSEFLSQETI---RCIPECKHCFHAECIDEWLRL-NDKCPVCRNSA 359 (369)
Q Consensus 311 ~~~C~ICL~~~~~~~~~---~~l~~C~H~fH~~Ci~~wl~~-~~~CP~Cr~~~ 359 (369)
-.+|-||-++|..++.. |.|. |||.|...|+..-+.. ...||.||...
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~-c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLK-CGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CCceeecCccccccCcccCCcccc-cCceehHhHHHHHhcCceeeccCCCCcc
Confidence 35899999999877433 5565 9999999999987654 45599999984
No 95
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.26 E-value=0.57 Score=49.07 Aligned_cols=37 Identities=27% Similarity=0.716 Sum_probs=28.7
Q ss_pred CCCcccccccccccccCceeeeeCCCCCccChHhHHHHH
Q 044271 308 GPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWL 346 (369)
Q Consensus 308 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl 346 (369)
-+.++.|.+|.-.+... .-.+-| |||.||++|+..-.
T Consensus 814 ~ep~d~C~~C~~~ll~~-pF~vf~-CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 814 LEPQDSCDHCGRPLLIK-PFYVFP-CGHCFHRDCLIRHV 850 (911)
T ss_pred ecCccchHHhcchhhcC-cceeee-ccchHHHHHHHHHH
Confidence 34578999998887655 334466 99999999998766
No 96
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.47 E-value=0.55 Score=42.00 Aligned_cols=54 Identities=22% Similarity=0.584 Sum_probs=37.9
Q ss_pred CCCcccccccccccccCcee-eeeCCC-----CCccChHhHHHHHhcCC--------CCCCcCCCCcCC
Q 044271 308 GPNSSACPICLSEFLSQETI-RCIPEC-----KHCFHAECIDEWLRLND--------KCPVCRNSATPV 362 (369)
Q Consensus 308 ~~~~~~C~ICL~~~~~~~~~-~~l~~C-----~H~fH~~Ci~~wl~~~~--------~CP~Cr~~~~~~ 362 (369)
.+.+..|-||++.=++...- -+-| | .|=.|..|+..|+.++. +||-|+++...+
T Consensus 17 ~e~eR~CWiCF~TdeDn~~a~WV~P-CrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv 84 (293)
T KOG3053|consen 17 QELERCCWICFATDEDNRLAAWVHP-CRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIV 84 (293)
T ss_pred cccceeEEEEeccCcccchhhhccc-ccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheee
Confidence 34567999999875554322 2334 5 48899999999994422 499999986544
No 97
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=82.34 E-value=1.7 Score=36.18 Aligned_cols=52 Identities=25% Similarity=0.703 Sum_probs=33.0
Q ss_pred cccccccccccccCcee---------eeeCCCCCcc-ChHhHHHHHhc-------------------------------C
Q 044271 311 SSACPICLSEFLSQETI---------RCIPECKHCF-HAECIDEWLRL-------------------------------N 349 (369)
Q Consensus 311 ~~~C~ICL~~~~~~~~~---------~~l~~C~H~f-H~~Ci~~wl~~-------------------------------~ 349 (369)
+..|+||||-=...--+ |--- |+..+ |..|+++.-+. +
T Consensus 2 d~~CpICme~PHNAVLLlCSS~~kgcRpym-c~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYM-CDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQPE 80 (162)
T ss_pred CccCceeccCCCceEEEEeccccCCccccc-cCCccchhHHHHHHHHHhcCCCCccccccccCcCCCccccccccccccc
Confidence 56899999974333221 1111 55444 66899997641 2
Q ss_pred CCCCCcCCCCcCCC
Q 044271 350 DKCPVCRNSATPVH 363 (369)
Q Consensus 350 ~~CP~Cr~~~~~~~ 363 (369)
..||+||.++..+.
T Consensus 81 L~CPLCRG~V~GWt 94 (162)
T PF07800_consen 81 LACPLCRGEVKGWT 94 (162)
T ss_pred ccCccccCceeceE
Confidence 35999999987663
No 98
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=82.29 E-value=0.79 Score=42.63 Aligned_cols=52 Identities=23% Similarity=0.557 Sum_probs=36.0
Q ss_pred CCCcccccccccccccCceee-eeCCCCCccChHhHHHHHh-cCCCCCCcCCCCc
Q 044271 308 GPNSSACPICLSEFLSQETIR-CIPECKHCFHAECIDEWLR-LNDKCPVCRNSAT 360 (369)
Q Consensus 308 ~~~~~~C~ICL~~~~~~~~~~-~l~~C~H~fH~~Ci~~wl~-~~~~CP~Cr~~~~ 360 (369)
+++++.|+.|+|++...|+-- -.| ||-..+.-|...--+ -+.+||.||+-..
T Consensus 11 edeed~cplcie~mditdknf~pc~-cgy~ic~fc~~~irq~lngrcpacrr~y~ 64 (480)
T COG5175 11 EDEEDYCPLCIEPMDITDKNFFPCP-CGYQICQFCYNNIRQNLNGRCPACRRKYD 64 (480)
T ss_pred ccccccCcccccccccccCCcccCC-cccHHHHHHHHHHHhhccCCChHhhhhcc
Confidence 345677999999998877532 233 776666677666332 2678999998654
No 99
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=81.78 E-value=0.72 Score=43.41 Aligned_cols=51 Identities=25% Similarity=0.627 Sum_probs=37.8
Q ss_pred cccccccccccccCce-eeeeCCC-----CCccChHhHHHHHh--cCCCCCCcCCCCcCC
Q 044271 311 SSACPICLSEFLSQET-IRCIPEC-----KHCFHAECIDEWLR--LNDKCPVCRNSATPV 362 (369)
Q Consensus 311 ~~~C~ICL~~~~~~~~-~~~l~~C-----~H~fH~~Ci~~wl~--~~~~CP~Cr~~~~~~ 362 (369)
+..|-||.++..+... .-..| | .+..|+.|++.|+. .+..|.+|.......
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~p-C~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~ 136 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISP-CSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINV 136 (323)
T ss_pred CCcEEEEecccccccccccccC-ccccCcHHHHHHHHHHhhhccccCeeeecccccceec
Confidence 5789999998765542 23345 6 27779999999997 567799998865443
No 100
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=81.69 E-value=0.59 Score=42.92 Aligned_cols=33 Identities=36% Similarity=0.787 Sum_probs=26.2
Q ss_pred CceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCC
Q 044271 324 QETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSA 359 (369)
Q Consensus 324 ~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~ 359 (369)
.--.|.+| |+|+|+.+|.+. ...+.||+|-..+
T Consensus 101 ~IYGRmIP-CkHvFCl~CAr~--~~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 101 AIYGRMIP-CKHVFCLECARS--DSDKICPLCDDRV 133 (389)
T ss_pred eeeecccc-cchhhhhhhhhc--CccccCcCcccHH
Confidence 33457888 999999999876 4578999997654
No 101
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.07 E-value=0.98 Score=46.10 Aligned_cols=49 Identities=31% Similarity=0.823 Sum_probs=39.5
Q ss_pred CCCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcCCCC
Q 044271 308 GPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPVHA 364 (369)
Q Consensus 308 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~~~~ 364 (369)
.+..++|+||++++ ..+..+ |. |..|+..|+..+..||+|+........
T Consensus 476 ~~~~~~~~~~~~~~----~~~~~~-~~---~~~~l~~~~~~~~~~pl~~~~~~~~~~ 524 (543)
T KOG0802|consen 476 REPNDVCAICYQEM----SARITP-CS---HALCLRKWLYVQEVCPLCHTYMKEDDF 524 (543)
T ss_pred hcccCcchHHHHHH----Hhcccc-cc---chhHHHhhhhhccccCCCchhhhcccc
Confidence 34468999999998 455566 77 999999999999999999887655443
No 102
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=79.93 E-value=0.7 Score=50.33 Aligned_cols=45 Identities=31% Similarity=0.746 Sum_probs=37.3
Q ss_pred ccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCC
Q 044271 312 SACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSA 359 (369)
Q Consensus 312 ~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~ 359 (369)
..|.||++.+.....+ . .|+|.+...|+..|+..+..||+|+...
T Consensus 1154 ~~c~ic~dil~~~~~I--~-~cgh~~c~~c~~~~l~~~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1154 FVCEICLDILRNQGGI--A-GCGHEPCCRCDELWLYASSRCPICKSIK 1198 (1394)
T ss_pred cchHHHHHHHHhcCCe--e-eechhHhhhHHHHHHHHhccCcchhhhh
Confidence 5999999998743332 2 2999999999999999999999998543
No 103
>PF15102 TMEM154: TMEM154 protein family
Probab=79.66 E-value=1.7 Score=35.71 Aligned_cols=6 Identities=33% Similarity=1.442 Sum_probs=3.5
Q ss_pred HHHHHh
Q 044271 342 IDEWLR 347 (369)
Q Consensus 342 i~~wl~ 347 (369)
+|+|+.
T Consensus 130 ldkwm~ 135 (146)
T PF15102_consen 130 LDKWMN 135 (146)
T ss_pred HHhHHH
Confidence 566664
No 104
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=78.80 E-value=1.3 Score=41.33 Aligned_cols=43 Identities=26% Similarity=0.729 Sum_probs=34.0
Q ss_pred CcccccccccccccCceeeeeCCC--CCccChHhHHHHHhcCCCCCCcCCCCc
Q 044271 310 NSSACPICLSEFLSQETIRCIPEC--KHCFHAECIDEWLRLNDKCPVCRNSAT 360 (369)
Q Consensus 310 ~~~~C~ICL~~~~~~~~~~~l~~C--~H~fH~~Ci~~wl~~~~~CP~Cr~~~~ 360 (369)
+-.+|+||.+.+..... +| ||.....|-. +....||.||.++.
T Consensus 47 ~lleCPvC~~~l~~Pi~-----QC~nGHlaCssC~~---~~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 47 DLLDCPVCFNPLSPPIF-----QCDNGHLACSSCRT---KVSNKCPTCRLPIG 91 (299)
T ss_pred hhccCchhhccCcccce-----ecCCCcEehhhhhh---hhcccCCccccccc
Confidence 34799999999877543 26 7888888876 57888999999875
No 105
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=78.35 E-value=0.62 Score=37.03 Aligned_cols=35 Identities=17% Similarity=0.032 Sum_probs=1.6
Q ss_pred chhhhHHHHHHHHHHHHHHHhhhhceecccccccc
Q 044271 231 LQVFRILALSIAIPALICASAIGICACCTDRSRLG 265 (369)
Q Consensus 231 ~~~~~ii~l~i~~~~l~~~~~~~~~~~~~~R~~~~ 265 (369)
-..++.|..+++++++++.++..++++++.||+++
T Consensus 75 ~~l~~pi~~sal~v~lVl~llsg~lv~rrcrrr~~ 109 (129)
T PF12191_consen 75 FPLLWPILGSALSVVLVLALLSGFLVWRRCRRREK 109 (129)
T ss_dssp SSSS-------------------------------
T ss_pred cceehhhhhhHHHHHHHHHHHHHHHHHhhhhcccc
Confidence 33445565566655555555444444444444443
No 106
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=77.53 E-value=1.7 Score=34.83 Aligned_cols=10 Identities=0% Similarity=0.002 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 044271 236 ILALSIAIPA 245 (369)
Q Consensus 236 ii~l~i~~~~ 245 (369)
.|++++++.+
T Consensus 68 ~Ii~gv~aGv 77 (122)
T PF01102_consen 68 GIIFGVMAGV 77 (122)
T ss_dssp HHHHHHHHHH
T ss_pred ehhHHHHHHH
Confidence 3333443333
No 107
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.60 E-value=1.2 Score=44.97 Aligned_cols=44 Identities=27% Similarity=0.617 Sum_probs=33.8
Q ss_pred ccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCC
Q 044271 312 SACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNS 358 (369)
Q Consensus 312 ~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~ 358 (369)
..|.||+.+|....-.-+-+.|||...+.|++. .-+.+|| |+++
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~--lyn~scp-~~~D 55 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQL--LYNASCP-TKRD 55 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccchHHHHHHHh--HhhccCC-CCcc
Confidence 579999999876664444445999999999997 4677898 6554
No 108
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.15 E-value=0.78 Score=41.83 Aligned_cols=41 Identities=24% Similarity=0.682 Sum_probs=28.4
Q ss_pred cccccccccccccCceeeeeCCCCCccCh-HhHHHHHhcCCCCCCcCCCC
Q 044271 311 SSACPICLSEFLSQETIRCIPECKHCFHA-ECIDEWLRLNDKCPVCRNSA 359 (369)
Q Consensus 311 ~~~C~ICL~~~~~~~~~~~l~~C~H~fH~-~Ci~~wl~~~~~CP~Cr~~~ 359 (369)
+..|+||++.-. ....|+ |||..-- .|-.. -..||+||+-+
T Consensus 300 ~~LC~ICmDaP~---DCvfLe-CGHmVtCt~CGkr----m~eCPICRqyi 341 (350)
T KOG4275|consen 300 RRLCAICMDAPR---DCVFLE-CGHMVTCTKCGKR----MNECPICRQYI 341 (350)
T ss_pred HHHHHHHhcCCc---ceEEee-cCcEEeehhhccc----cccCchHHHHH
Confidence 679999999733 355687 9997542 34433 34899999754
No 109
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=72.23 E-value=2.6 Score=37.11 Aligned_cols=42 Identities=36% Similarity=0.850 Sum_probs=31.0
Q ss_pred CCcccccccccc-----cccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcC
Q 044271 309 PNSSACPICLSE-----FLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCR 356 (369)
Q Consensus 309 ~~~~~C~ICL~~-----~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr 356 (369)
..+..|.||-++ |+. +.+...++|+.+||+.|... ..||-|.
T Consensus 150 ~kGfiCe~C~~~~~IfPF~~-~~~~~C~~C~~v~H~~C~~~-----~~CpkC~ 196 (202)
T PF13901_consen 150 QKGFICEICNSDDIIFPFQI-DTTVRCPKCKSVFHKSCFRK-----KSCPKCA 196 (202)
T ss_pred hCCCCCccCCCCCCCCCCCC-CCeeeCCcCccccchhhcCC-----CCCCCcH
Confidence 346899999764 344 34555667999999999882 6799994
No 110
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=71.59 E-value=1 Score=46.93 Aligned_cols=44 Identities=32% Similarity=0.747 Sum_probs=34.1
Q ss_pred ccccccccccccCceeeeeCCCCCccChHhHHHHHhc--CCCCCCcCCCCc
Q 044271 312 SACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL--NDKCPVCRNSAT 360 (369)
Q Consensus 312 ~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~--~~~CP~Cr~~~~ 360 (369)
..|.||++ .+.....+ |+|.|..+|+..-+.. ...||+||..+.
T Consensus 455 ~~c~ic~~----~~~~~it~-c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~ 500 (674)
T KOG1001|consen 455 HWCHICCD----LDSFFITR-CGHDFCVECLKKSIQQSENAPCPLCRNVLK 500 (674)
T ss_pred cccccccc----cccceeec-ccchHHHHHHHhccccccCCCCcHHHHHHH
Confidence 69999999 44445566 9999999999988754 345999998643
No 111
>PF15050 SCIMP: SCIMP protein
Probab=71.55 E-value=0.97 Score=35.50 Aligned_cols=16 Identities=13% Similarity=0.125 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHhhhhc
Q 044271 240 SIAIPALICASAIGIC 255 (369)
Q Consensus 240 ~i~~~~l~~~~~~~~~ 255 (369)
+++++++.+.+++++|
T Consensus 13 AVaII~vS~~lglIly 28 (133)
T PF15050_consen 13 AVAIILVSVVLGLILY 28 (133)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333443333
No 112
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=66.61 E-value=4.5 Score=41.91 Aligned_cols=41 Identities=17% Similarity=0.432 Sum_probs=30.3
Q ss_pred ccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCC
Q 044271 312 SACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPV 354 (369)
Q Consensus 312 ~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~ 354 (369)
..|++|-.-+.. ..+ ..+.|+|.=|.+|+.+|+.++.-||.
T Consensus 780 ~~CtVC~~vi~G-~~~-~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 780 AKCTVCDLVIRG-VDV-WCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred cCceeecceeee-eEe-ecccccccccHHHHHHHHhcCCCCcc
Confidence 478887655332 222 33459999999999999999998876
No 113
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=66.34 E-value=4.4 Score=38.78 Aligned_cols=27 Identities=30% Similarity=0.931 Sum_probs=20.3
Q ss_pred CCCccChHhHHHHHhc-------------CCCCCCcCCCC
Q 044271 333 CKHCFHAECIDEWLRL-------------NDKCPVCRNSA 359 (369)
Q Consensus 333 C~H~fH~~Ci~~wl~~-------------~~~CP~Cr~~~ 359 (369)
|.-.++.+|+.+|+.. +..||+||+..
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~F 350 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKF 350 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccc
Confidence 5666788999999832 44699999863
No 114
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=66.26 E-value=5.2 Score=38.33 Aligned_cols=50 Identities=16% Similarity=0.383 Sum_probs=41.0
Q ss_pred CcccccccccccccCceeeeeCCCCCccChHhHHHHHhcC---CCCCCcCCCCc
Q 044271 310 NSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLN---DKCPVCRNSAT 360 (369)
Q Consensus 310 ~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~---~~CP~Cr~~~~ 360 (369)
.-..|+|=-+.-.+..+-..|. |||+.-++-++...+.. ..||.|-.+-.
T Consensus 333 SvF~CPVlKeqtsdeNPPm~L~-CGHVISkdAlnrLS~ng~~sfKCPYCP~e~~ 385 (394)
T KOG2817|consen 333 SVFICPVLKEQTSDENPPMMLI-CGHVISKDALNRLSKNGSQSFKCPYCPVEQL 385 (394)
T ss_pred ceeecccchhhccCCCCCeeee-ccceecHHHHHHHhhCCCeeeeCCCCCcccC
Confidence 4579999999988888878888 99999999999977654 36999966543
No 115
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=64.38 E-value=2.5 Score=42.92 Aligned_cols=43 Identities=30% Similarity=0.803 Sum_probs=28.4
Q ss_pred CCcccccccccc-----cccCceeeeeCCCCCccChHhHHHHHhcCCCCCCc
Q 044271 309 PNSSACPICLSE-----FLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVC 355 (369)
Q Consensus 309 ~~~~~C~ICL~~-----~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~C 355 (369)
..+..|.+|-.. |+.....+.. .|+++||+.|+.. +...||-|
T Consensus 509 ~~gfiCe~Cq~~~iiyPF~~~~~~rC~-~C~avfH~~C~~r---~s~~CPrC 556 (580)
T KOG1829|consen 509 GKGFICELCQHNDIIYPFETRNTRRCS-TCLAVFHKKCLRR---KSPCCPRC 556 (580)
T ss_pred cCeeeeeeccCCCcccccccccceeHH-HHHHHHHHHHHhc---cCCCCCch
Confidence 446788999221 3322233334 4999999999876 55559999
No 116
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=64.08 E-value=5.4 Score=41.61 Aligned_cols=51 Identities=27% Similarity=0.780 Sum_probs=38.7
Q ss_pred CCCcccccccccccccCceeeeeC-CCC---CccChHhHHHHHhc--CCCCCCcCCCC
Q 044271 308 GPNSSACPICLSEFLSQETIRCIP-ECK---HCFHAECIDEWLRL--NDKCPVCRNSA 359 (369)
Q Consensus 308 ~~~~~~C~ICL~~~~~~~~~~~l~-~C~---H~fH~~Ci~~wl~~--~~~CP~Cr~~~ 359 (369)
.++...|-||..|=..++++- -| +|. ...|++|+.+|+.- ...|-+|+.+.
T Consensus 9 N~d~~~CRICr~e~~~d~pLf-hPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~ 65 (1175)
T COG5183 9 NEDKRSCRICRTEDIRDDPLF-HPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEY 65 (1175)
T ss_pred CccchhceeecCCCCCCCcCc-ccccccchhHHHHHHHHHHHHhcCCCcceeeeccee
Confidence 455689999999977777654 33 232 56899999999964 56699999875
No 117
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=63.27 E-value=3.6 Score=32.99 Aligned_cols=29 Identities=17% Similarity=0.005 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHhhhhceecccccccc
Q 044271 237 LALSIAIPALICASAIGICACCTDRSRLG 265 (369)
Q Consensus 237 i~l~i~~~~l~~~~~~~~~~~~~~R~~~~ 265 (369)
|++.+++++..+++.++++.|+.+|++++
T Consensus 66 i~~Ii~gv~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred eeehhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 55555555555555544444444444444
No 118
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF15102 TMEM154: TMEM154 protein family
Probab=62.13 E-value=3.1 Score=34.23 Aligned_cols=17 Identities=6% Similarity=0.022 Sum_probs=6.7
Q ss_pred HHHHHHHHHHhhhhcee
Q 044271 241 IAIPALICASAIGICAC 257 (369)
Q Consensus 241 i~~~~l~~~~~~~~~~~ 257 (369)
+++++++++++++++++
T Consensus 66 VLLvlLLl~vV~lv~~~ 82 (146)
T PF15102_consen 66 VLLVLLLLSVVCLVIYY 82 (146)
T ss_pred HHHHHHHHHHHHheeEE
Confidence 44434444443333333
No 120
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=60.68 E-value=9.3 Score=32.79 Aligned_cols=7 Identities=29% Similarity=0.444 Sum_probs=4.0
Q ss_pred cceEeec
Q 044271 214 QEIGCFN 220 (369)
Q Consensus 214 ~~~~C~~ 220 (369)
.+-.|..
T Consensus 48 ~q~~C~~ 54 (179)
T PF13908_consen 48 DQGSCDN 54 (179)
T ss_pred ccccccc
Confidence 3556665
No 121
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=59.32 E-value=5.5 Score=36.14 Aligned_cols=49 Identities=29% Similarity=0.637 Sum_probs=36.0
Q ss_pred cccccccccccccCceeeee---CCCCCccChHhHHHHHhc---------CCCCCCcCCCC
Q 044271 311 SSACPICLSEFLSQETIRCI---PECKHCFHAECIDEWLRL---------NDKCPVCRNSA 359 (369)
Q Consensus 311 ~~~C~ICL~~~~~~~~~~~l---~~C~H~fH~~Ci~~wl~~---------~~~CP~Cr~~~ 359 (369)
..+|.+|.+++.+.++.+.. |.|+-.+|..|+..-+.. ...||.|+..+
T Consensus 182 ~~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~ 242 (276)
T KOG3005|consen 182 NVECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFL 242 (276)
T ss_pred chhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhcee
Confidence 36999999999655554422 357889999999995532 35699998753
No 122
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=57.86 E-value=3.1 Score=42.83 Aligned_cols=50 Identities=22% Similarity=0.640 Sum_probs=39.3
Q ss_pred cccccccccccccCceeeeeCCCCCccChHhHHHHHhc---CCCCCCcCCCCcCCCC
Q 044271 311 SSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL---NDKCPVCRNSATPVHA 364 (369)
Q Consensus 311 ~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~---~~~CP~Cr~~~~~~~~ 364 (369)
..+|+||++.|.+. ..+ +|.|.|...|+..-+.. ...||+|+..++....
T Consensus 21 ~lEc~ic~~~~~~p---~~~-kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~ 73 (684)
T KOG4362|consen 21 ILECPICLEHVKEP---SLL-KCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSL 73 (684)
T ss_pred hccCCceeEEeecc---chh-hhhHHHHhhhhhceeeccCccccchhhhhhhhhhhc
Confidence 57999999999887 234 39999999999886644 4569999987766544
No 123
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=57.38 E-value=11 Score=30.55 Aligned_cols=56 Identities=20% Similarity=0.418 Sum_probs=37.1
Q ss_pred CcccccccccccccCceeeeeCCCCCccChH-hHHHHH--hcCCCCCCcCCCCcCCCCC
Q 044271 310 NSSACPICLSEFLSQETIRCIPECKHCFHAE-CIDEWL--RLNDKCPVCRNSATPVHAS 365 (369)
Q Consensus 310 ~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~-Ci~~wl--~~~~~CP~Cr~~~~~~~~~ 365 (369)
.-.+|-||-|.-.+..-++---.||=...-. |...|= ..+..||+|+.+.-+....
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~~~ 137 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSSSA 137 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccccc
Confidence 3479999999865554332222367666665 566775 3478899999987665443
No 124
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=56.53 E-value=4.7 Score=29.69 Aligned_cols=9 Identities=44% Similarity=0.634 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 044271 236 ILALSIAIP 244 (369)
Q Consensus 236 ii~l~i~~~ 244 (369)
+++++++++
T Consensus 9 iialiv~~i 17 (81)
T PF00558_consen 9 IIALIVALI 17 (81)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 125
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.43 E-value=7.4 Score=35.67 Aligned_cols=27 Identities=22% Similarity=0.733 Sum_probs=21.8
Q ss_pred CCCccChHhHHHHHh-------------cCCCCCCcCCCC
Q 044271 333 CKHCFHAECIDEWLR-------------LNDKCPVCRNSA 359 (369)
Q Consensus 333 C~H~fH~~Ci~~wl~-------------~~~~CP~Cr~~~ 359 (369)
|.-.++++|+.+|+. ++..||+||+..
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~f 364 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNF 364 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhce
Confidence 778889999999883 356799999864
No 126
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=54.77 E-value=5.2 Score=26.31 Aligned_cols=43 Identities=30% Similarity=0.722 Sum_probs=30.0
Q ss_pred cccccccccccCceeeeeCCCCCccChHhHHHHHh------cCCCCCCcC
Q 044271 313 ACPICLSEFLSQETIRCIPECKHCFHAECIDEWLR------LNDKCPVCR 356 (369)
Q Consensus 313 ~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~------~~~~CP~Cr 356 (369)
.|.||...-..++.|.-- .|+..||..|+..=.. ....||.|+
T Consensus 1 ~C~vC~~~~~~~~~i~C~-~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCD-SCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSSEEEBS-TTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCCCeEEcC-CCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 488999955555555544 5999999999987543 245677774
No 127
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=54.56 E-value=6.4 Score=36.09 Aligned_cols=27 Identities=7% Similarity=0.086 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHhhhhceeccccccc
Q 044271 238 ALSIAIPALICASAIGICACCTDRSRL 264 (369)
Q Consensus 238 ~l~i~~~~l~~~~~~~~~~~~~~R~~~ 264 (369)
+++.++++++.++++++|+|..|||++
T Consensus 262 giaalvllil~vvliiLYiWlyrrRK~ 288 (295)
T TIGR01478 262 GIAALVLIILTVVLIILYIWLYRRRKK 288 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 333444444444444455554444443
No 128
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=53.73 E-value=5.5 Score=38.75 Aligned_cols=38 Identities=21% Similarity=0.638 Sum_probs=29.0
Q ss_pred CcccccccccccccC-ceeeeeCCCCCccChHhHHHHHhc
Q 044271 310 NSSACPICLSEFLSQ-ETIRCIPECKHCFHAECIDEWLRL 348 (369)
Q Consensus 310 ~~~~C~ICL~~~~~~-~~~~~l~~C~H~fH~~Ci~~wl~~ 348 (369)
...+|.||..++... +.-... .|+|.|..+|+.+.++.
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~-~C~H~fC~~C~k~~iev 183 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVL-KCGHRFCKDCVKQHIEV 183 (384)
T ss_pred ccccCccCccccccHhhhHHHh-cccchhhhHHhHHHhhh
Confidence 467999999555555 444444 49999999999998864
No 129
>PTZ00370 STEVOR; Provisional
Probab=53.32 E-value=6.8 Score=35.98 Aligned_cols=27 Identities=7% Similarity=0.082 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHhhhhceeccccccc
Q 044271 238 ALSIAIPALICASAIGICACCTDRSRL 264 (369)
Q Consensus 238 ~l~i~~~~l~~~~~~~~~~~~~~R~~~ 264 (369)
+++.++++++.++++++|+|..|||++
T Consensus 258 giaalvllil~vvliilYiwlyrrRK~ 284 (296)
T PTZ00370 258 GIAALVLLILAVVLIILYIWLYRRRKN 284 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 333334444444444445554444433
No 130
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=51.60 E-value=13 Score=24.70 Aligned_cols=43 Identities=26% Similarity=0.645 Sum_probs=19.2
Q ss_pred ccccccccccccCceeeeeCCCCCccChHhHHHHHhc-----CCCCCCcCCC
Q 044271 312 SACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL-----NDKCPVCRNS 358 (369)
Q Consensus 312 ~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~-----~~~CP~Cr~~ 358 (369)
..|+|-...++. .+|... |.|.-.-+ ++.||+. ...||+|.++
T Consensus 3 L~CPls~~~i~~--P~Rg~~-C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRI--PVRGKN-CKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SS--EEEETT---SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEe--CccCCc-CcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 367777776544 666665 88873222 3456643 3569999864
No 131
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=49.41 E-value=20 Score=33.34 Aligned_cols=54 Identities=22% Similarity=0.539 Sum_probs=37.8
Q ss_pred CCCccccccccccc---------ccCc-------eeeeeCCCCCccChHhHHHHHhc---------CCCCCCcCCCCcCC
Q 044271 308 GPNSSACPICLSEF---------LSQE-------TIRCIPECKHCFHAECIDEWLRL---------NDKCPVCRNSATPV 362 (369)
Q Consensus 308 ~~~~~~C~ICL~~~---------~~~~-------~~~~l~~C~H~fH~~Ci~~wl~~---------~~~CP~Cr~~~~~~ 362 (369)
...+.+|++|+..= +.+- ....-| |||+--+.=..-|.+. +..||.|-+.|...
T Consensus 338 g~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~P-CGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge 416 (429)
T KOG3842|consen 338 GQRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNP-CGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGE 416 (429)
T ss_pred CcccCcCCeeeeecceeeeeccccceeEecCCCcccccCC-cccccchhhhhHhhcCcCCCccccccccCcchhhhhccC
Confidence 34468999999861 1111 123455 9999888889999865 56799998877654
No 132
>PHA03164 hypothetical protein; Provisional
Probab=49.34 E-value=29 Score=25.04 Aligned_cols=44 Identities=14% Similarity=0.148 Sum_probs=20.4
Q ss_pred cceEeecCCCCCCCC-----CCchhhhHHHHHHHHHHHHHHHhhhhcee
Q 044271 214 QEIGCFNNSKPGGSN-----GGLQVFRILALSIAIPALICASAIGICAC 257 (369)
Q Consensus 214 ~~~~C~~~~~~~~~~-----~~~~~~~ii~l~i~~~~l~~~~~~~~~~~ 257 (369)
.-..|.-+.+...+. ...+.+..+++..++++.++.+++++++.
T Consensus 33 sfveclpPpqisrtawnlwnnrRktftFlvLtgLaIamILfiifvlyvF 81 (88)
T PHA03164 33 SFVECLPPPQISRTAWNLWNNRRKTFTFLVLTGLAIAMILFIIFVLYVF 81 (88)
T ss_pred ccceecCCcccCchhHHHHHhhhheeehHHHHHHHHHHHHHHHHHHHhe
Confidence 367788776543332 11222333444444444444444444443
No 133
>PRK11827 hypothetical protein; Provisional
Probab=49.05 E-value=7.3 Score=26.98 Aligned_cols=20 Identities=30% Similarity=0.340 Sum_probs=16.2
Q ss_pred HHHHhcCCCCCCcCCCCcCC
Q 044271 343 DEWLRLNDKCPVCRNSATPV 362 (369)
Q Consensus 343 ~~wl~~~~~CP~Cr~~~~~~ 362 (369)
++||..-..||+|+.++.-.
T Consensus 2 d~~LLeILaCP~ckg~L~~~ 21 (60)
T PRK11827 2 DHRLLEIIACPVCNGKLWYN 21 (60)
T ss_pred ChHHHhheECCCCCCcCeEc
Confidence 57888888999999988643
No 134
>PF15065 NCU-G1: Lysosomal transcription factor, NCU-G1
Probab=48.99 E-value=16 Score=34.93 Aligned_cols=32 Identities=19% Similarity=0.183 Sum_probs=19.0
Q ss_pred chhhhHHHHHHHHHHHHHHHhhhhceeccccc
Q 044271 231 LQVFRILALSIAIPALICASAIGICACCTDRS 262 (369)
Q Consensus 231 ~~~~~ii~l~i~~~~l~~~~~~~~~~~~~~R~ 262 (369)
..++.|+.++.++.+++++++.++.+.+++|+
T Consensus 317 ~lvi~i~~vgLG~P~l~li~Ggl~v~~~r~r~ 348 (350)
T PF15065_consen 317 PLVIMIMAVGLGVPLLLLILGGLYVCLRRRRK 348 (350)
T ss_pred HHHHHHHHHHhhHHHHHHHHhhheEEEecccc
Confidence 44555666666777776666666555444443
No 135
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=48.89 E-value=10 Score=23.34 Aligned_cols=26 Identities=31% Similarity=0.774 Sum_probs=16.1
Q ss_pred cccccccccccCce-------eeeeCCCCCccC
Q 044271 313 ACPICLSEFLSQET-------IRCIPECKHCFH 338 (369)
Q Consensus 313 ~C~ICL~~~~~~~~-------~~~l~~C~H~fH 338 (369)
.|+=|-..|+..+. ....+.|+|.|+
T Consensus 4 ~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred ECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 57777777765542 223445888886
No 136
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.88 E-value=20 Score=32.33 Aligned_cols=51 Identities=18% Similarity=0.317 Sum_probs=39.9
Q ss_pred CcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcCC
Q 044271 310 NSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPV 362 (369)
Q Consensus 310 ~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~~ 362 (369)
....|+|=--+|.....-..+..|||+|-..-+.+- +..+|++|.+.....
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~~~ 160 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQED 160 (293)
T ss_pred ceeecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCccccc
Confidence 457899988888777766667779999998887774 477899999876543
No 137
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=47.39 E-value=19 Score=24.10 Aligned_cols=43 Identities=26% Similarity=0.494 Sum_probs=21.4
Q ss_pred ccccccccccCc------eeeeeCCCCCccChHhHHHHHhcCCCCCCcC
Q 044271 314 CPICLSEFLSQE------TIRCIPECKHCFHAECIDEWLRLNDKCPVCR 356 (369)
Q Consensus 314 C~ICL~~~~~~~------~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr 356 (369)
|.-|+..+..+. ..-.-|.|++.|.-+|=.=-=+.-.+||-|.
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcChhhhccccCCcCCC
Confidence 556777776652 3455677999998887332114456688874
No 138
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=47.36 E-value=20 Score=33.73 Aligned_cols=10 Identities=10% Similarity=0.288 Sum_probs=5.7
Q ss_pred cccCccceee
Q 044271 156 ISSCQIISTL 165 (369)
Q Consensus 156 ~~~C~~~~~v 165 (369)
.+.|.....+
T Consensus 224 SY~C~seq~i 233 (306)
T PF01299_consen 224 SYKCNSEQSI 233 (306)
T ss_pred eeECCCCCEE
Confidence 4578755433
No 139
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=46.85 E-value=9.3 Score=33.72 Aligned_cols=40 Identities=30% Similarity=0.762 Sum_probs=28.4
Q ss_pred ccccccccccCceeeeeCCCCCccC-hHhHHHHHhcCCCCCCcCCCCcC
Q 044271 314 CPICLSEFLSQETIRCIPECKHCFH-AECIDEWLRLNDKCPVCRNSATP 361 (369)
Q Consensus 314 C~ICL~~~~~~~~~~~l~~C~H~fH-~~Ci~~wl~~~~~CP~Cr~~~~~ 361 (369)
|-.|-++ ...|-.+| |.|.-| ..|-.. -..||+|+.....
T Consensus 161 Cr~C~~~---~~~VlllP-CrHl~lC~~C~~~----~~~CPiC~~~~~s 201 (207)
T KOG1100|consen 161 CRKCGER---EATVLLLP-CRHLCLCGICDES----LRICPICRSPKTS 201 (207)
T ss_pred ceecCcC---CceEEeec-ccceEeccccccc----CccCCCCcChhhc
Confidence 8888775 55588899 987655 457654 3459999987644
No 140
>PF14979 TMEM52: Transmembrane 52
Probab=46.60 E-value=24 Score=28.99 Aligned_cols=35 Identities=17% Similarity=0.341 Sum_probs=16.0
Q ss_pred CCCCchhhhHHHHHHHHHHHHHHHhhhhce-eccccc
Q 044271 227 SNGGLQVFRILALSIAIPALICASAIGICA-CCTDRS 262 (369)
Q Consensus 227 ~~~~~~~~~ii~l~i~~~~l~~~~~~~~~~-~~~~R~ 262 (369)
.+.+.|-+|++++++ +.++++-+....+. |+.+|+
T Consensus 15 ~W~~LWyIwLill~~-~llLLCG~ta~C~rfCClrk~ 50 (154)
T PF14979_consen 15 RWSSLWYIWLILLIG-FLLLLCGLTASCVRFCCLRKQ 50 (154)
T ss_pred ceehhhHHHHHHHHH-HHHHHHHHHHHHHHHHHhccc
Confidence 455566555554433 33344444333333 454444
No 141
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=46.35 E-value=25 Score=27.46 Aligned_cols=26 Identities=15% Similarity=0.069 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHhhhhceecccccccc
Q 044271 240 SIAIPALICASAIGICACCTDRSRLG 265 (369)
Q Consensus 240 ~i~~~~l~~~~~~~~~~~~~~R~~~~ 265 (369)
+++++++++.+++.+..|+..|++.+
T Consensus 5 ~il~llLll~l~asl~~wr~~~rq~k 30 (107)
T PF15330_consen 5 GILALLLLLSLAASLLAWRMKQRQKK 30 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 34444444445555555554444444
No 142
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=45.58 E-value=9.9 Score=28.65 Aligned_cols=28 Identities=14% Similarity=0.334 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHhhhhceeccccccc
Q 044271 237 LALSIAIPALICASAIGICACCTDRSRL 264 (369)
Q Consensus 237 i~l~i~~~~l~~~~~~~~~~~~~~R~~~ 264 (369)
-+++.++.++++++++.+++||+.|++.
T Consensus 43 pyLA~GGG~iLilIii~Lv~CC~~K~K~ 70 (98)
T PF07204_consen 43 PYLAAGGGLILILIIIALVCCCRAKHKT 70 (98)
T ss_pred HHhhccchhhhHHHHHHHHHHhhhhhhh
Confidence 3333333333333334444455555443
No 143
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=45.14 E-value=8.9 Score=34.13 Aligned_cols=47 Identities=32% Similarity=0.827 Sum_probs=35.0
Q ss_pred Ccccccccccc-cccCc-eeeeeCCCCCccChHhHHHHHhc-CCCCC--CcC
Q 044271 310 NSSACPICLSE-FLSQE-TIRCIPECKHCFHAECIDEWLRL-NDKCP--VCR 356 (369)
Q Consensus 310 ~~~~C~ICL~~-~~~~~-~~~~l~~C~H~fH~~Ci~~wl~~-~~~CP--~Cr 356 (369)
.+..|+||-.+ |-..+ ++-+-|+|=|-.+..|++.-+.. ...|| -|-
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~ 60 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCG 60 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHH
Confidence 35699999887 43333 44556679999999999999854 67798 664
No 144
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=44.85 E-value=7.6 Score=27.15 Aligned_cols=6 Identities=0% Similarity=-0.463 Sum_probs=0.0
Q ss_pred hhceec
Q 044271 253 GICACC 258 (369)
Q Consensus 253 ~~~~~~ 258 (369)
++++++
T Consensus 30 lf~iyR 35 (64)
T PF01034_consen 30 LFLIYR 35 (64)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 333343
No 145
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=44.17 E-value=18 Score=31.88 Aligned_cols=16 Identities=13% Similarity=0.154 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHhh
Q 044271 237 LALSIAIPALICASAI 252 (369)
Q Consensus 237 i~l~i~~~~l~~~~~~ 252 (369)
++.+++.++|++++.+
T Consensus 43 iVAG~~tVILVI~i~v 58 (221)
T PF08374_consen 43 IVAGIMTVILVIFIVV 58 (221)
T ss_pred eecchhhhHHHHHHHH
Confidence 3333333333333333
No 146
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=42.81 E-value=27 Score=28.58 Aligned_cols=19 Identities=26% Similarity=0.392 Sum_probs=8.2
Q ss_pred HHHHHHHHhhhhceecccc
Q 044271 243 IPALICASAIGICACCTDR 261 (369)
Q Consensus 243 ~~~l~~~~~~~~~~~~~~R 261 (369)
+++++++++++++++.+|+
T Consensus 38 IvVliiiiivli~lcssRK 56 (189)
T PF05568_consen 38 IVVLIIIIIVLIYLCSSRK 56 (189)
T ss_pred HHHHHHHHHHHHHHHhhhh
Confidence 3344444444444444333
No 147
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=42.56 E-value=12 Score=35.02 Aligned_cols=28 Identities=18% Similarity=0.063 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHhhhhceeccccccc
Q 044271 237 LALSIAIPALICASAIGICACCTDRSRL 264 (369)
Q Consensus 237 i~l~i~~~~l~~~~~~~~~~~~~~R~~~ 264 (369)
|+.+++++++++++++++|+..+.||.+
T Consensus 258 I~aSiiaIliIVLIMvIIYLILRYRRKK 285 (299)
T PF02009_consen 258 IIASIIAILIIVLIMVIIYLILRYRRKK 285 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555556666666666666544444433
No 148
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.14 E-value=11 Score=39.51 Aligned_cols=8 Identities=13% Similarity=0.733 Sum_probs=3.7
Q ss_pred CeeEecCC
Q 044271 52 FNLTCTSQ 59 (369)
Q Consensus 52 f~l~C~~~ 59 (369)
+-.+|+++
T Consensus 85 y~asCS~D 92 (846)
T KOG2066|consen 85 YVASCSDD 92 (846)
T ss_pred eEEEecCC
Confidence 33455444
No 149
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=42.03 E-value=32 Score=27.08 Aligned_cols=47 Identities=23% Similarity=0.352 Sum_probs=34.7
Q ss_pred cccccccccccccCc----------eeeeeCCCCCccChHhHHHHHhcCCCCCCcCC
Q 044271 311 SSACPICLSEFLSQE----------TIRCIPECKHCFHAECIDEWLRLNDKCPVCRN 357 (369)
Q Consensus 311 ~~~C~ICL~~~~~~~----------~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~ 357 (369)
...|--|+..|.+.. ..-.-++|++.|..+|=.=+-+.-.+||-|..
T Consensus 55 ~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~~ 111 (112)
T TIGR00622 55 SRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCIH 111 (112)
T ss_pred CCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCCC
Confidence 356999999886531 12235579999999997777777788999863
No 150
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=41.96 E-value=17 Score=21.70 Aligned_cols=20 Identities=30% Similarity=0.630 Sum_probs=13.4
Q ss_pred CCCccChHhHHHHHhcCCCCCCcCCC
Q 044271 333 CKHCFHAECIDEWLRLNDKCPVCRNS 358 (369)
Q Consensus 333 C~H~fH~~Ci~~wl~~~~~CP~Cr~~ 358 (369)
|||++-..- ....||+|.++
T Consensus 7 CGy~y~~~~------~~~~CP~Cg~~ 26 (33)
T cd00350 7 CGYIYDGEE------APWVCPVCGAP 26 (33)
T ss_pred CCCEECCCc------CCCcCcCCCCc
Confidence 777765432 55689999764
No 151
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=41.62 E-value=13 Score=38.92 Aligned_cols=54 Identities=13% Similarity=0.224 Sum_probs=38.5
Q ss_pred Cccccccccccccc---CceeeeeCCCCCccChHhHHHHHhc------CCCCCCcCCCCcCCC
Q 044271 310 NSSACPICLSEFLS---QETIRCIPECKHCFHAECIDEWLRL------NDKCPVCRNSATPVH 363 (369)
Q Consensus 310 ~~~~C~ICL~~~~~---~~~~~~l~~C~H~fH~~Ci~~wl~~------~~~CP~Cr~~~~~~~ 363 (369)
..+.|.||.-++.+ +..+-.+-.|.|-|...||..|+.+ +-.|++|...+..+.
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWs 157 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWS 157 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhh
Confidence 34667777777665 3333333369999999999999954 455899999887664
No 152
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=41.47 E-value=8.8 Score=35.67 Aligned_cols=22 Identities=18% Similarity=0.413 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhceecccccccc
Q 044271 244 PALICASAIGICACCTDRSRLG 265 (369)
Q Consensus 244 ~~l~~~~~~~~~~~~~~R~~~~ 265 (369)
+++++++++++++|+++||..+
T Consensus 156 ~~iLLIA~iIa~icyrrkR~GK 177 (290)
T PF05454_consen 156 AAILLIAGIIACICYRRKRKGK 177 (290)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHhhhhhhccc
Confidence 3333334444444444444333
No 153
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=41.40 E-value=28 Score=30.50 Aligned_cols=25 Identities=16% Similarity=-0.016 Sum_probs=12.1
Q ss_pred HHHHHHHHHHhhhhceecccccccc
Q 044271 241 IAIPALICASAIGICACCTDRSRLG 265 (369)
Q Consensus 241 i~~~~l~~~~~~~~~~~~~~R~~~~ 265 (369)
++.+++++++++..|++..||..+.
T Consensus 108 ~g~~lLla~~~~~~Y~~~~Rrs~~~ 132 (202)
T PF06365_consen 108 SGSFLLLAILLGAGYCCHQRRSWSK 132 (202)
T ss_pred hhHHHHHHHHHHHHHHhhhhccCCc
Confidence 3334455555555555554554433
No 154
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=41.02 E-value=17 Score=34.65 Aligned_cols=28 Identities=18% Similarity=0.063 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHhhhhceeccccccc
Q 044271 237 LALSIAIPALICASAIGICACCTDRSRL 264 (369)
Q Consensus 237 i~l~i~~~~l~~~~~~~~~~~~~~R~~~ 264 (369)
|+.+++++++++++.+++|+..|.||+.
T Consensus 312 IiaSiIAIvvIVLIMvIIYLILRYRRKK 339 (353)
T TIGR01477 312 IIASIIAILIIVLIMVIIYLILRYRRKK 339 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3344444444444444444444444443
No 155
>PTZ00046 rifin; Provisional
Probab=40.69 E-value=17 Score=34.69 Aligned_cols=28 Identities=18% Similarity=0.077 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHhhhhceeccccccc
Q 044271 237 LALSIAIPALICASAIGICACCTDRSRL 264 (369)
Q Consensus 237 i~l~i~~~~l~~~~~~~~~~~~~~R~~~ 264 (369)
|+.+++++++++++.+++|+..|.||+.
T Consensus 317 IiaSiiAIvVIVLIMvIIYLILRYRRKK 344 (358)
T PTZ00046 317 IIASIVAIVVIVLIMVIIYLILRYRRKK 344 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3344444444444444444444444443
No 156
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=39.44 E-value=49 Score=24.12 Aligned_cols=54 Identities=22% Similarity=0.392 Sum_probs=20.9
Q ss_pred CCcccccccccccccC---ceeeeeCCCCCccChHhHHHHHh-cCCCCCCcCCCCcCC
Q 044271 309 PNSSACPICLSEFLSQ---ETIRCIPECKHCFHAECIDEWLR-LNDKCPVCRNSATPV 362 (369)
Q Consensus 309 ~~~~~C~ICL~~~~~~---~~~~~l~~C~H~fH~~Ci~~wl~-~~~~CP~Cr~~~~~~ 362 (369)
.....|-||-+++... +.-...-.|+-...+.|.+-=.+ .++.||-|+.+....
T Consensus 7 ~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr~ 64 (80)
T PF14569_consen 7 LNGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKRH 64 (80)
T ss_dssp -SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B----
T ss_pred cCCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcccc
Confidence 4467999999997544 33333334677777888876554 478899999876543
No 157
>PF05715 zf-piccolo: Piccolo Zn-finger; InterPro: IPR008899 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This (predicted) zinc finger is found in the bassoon and piccolo proteins, both of which are components of the presynaptic cytoskeletal matrix (PCM) assembled at the active zone of neurotransmitter release, where Piccolo plays a role in the trafficking of synaptic vesicles (SVs) [, , ]. The Piccolo zinc fingers were found to interact with the dual prenylated rab3A and VAMP2/Synaptobrevin II receptor PRA1. There are eight conserved cysteines in Piccolo-type zinc fingers, suggesting that they coordinates two zinc ligands. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding, 0045202 synapse
Probab=39.38 E-value=23 Score=24.32 Aligned_cols=14 Identities=21% Similarity=0.726 Sum_probs=10.3
Q ss_pred CCCCCCcCCCCcCC
Q 044271 349 NDKCPVCRNSATPV 362 (369)
Q Consensus 349 ~~~CP~Cr~~~~~~ 362 (369)
+..||+|+..+...
T Consensus 2 k~~CPlCkt~~n~g 15 (61)
T PF05715_consen 2 KSLCPLCKTTLNVG 15 (61)
T ss_pred CccCCcccchhhcC
Confidence 46799999887443
No 158
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=39.31 E-value=32 Score=32.25 Aligned_cols=65 Identities=26% Similarity=0.400 Sum_probs=44.2
Q ss_pred HhhccceeeccCCCCCCCCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCC
Q 044271 292 IESFQKLVLGESKRLPGPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRN 357 (369)
Q Consensus 292 ~~~~p~~~~~~~~~~~~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~ 357 (369)
..-+|-..+.+...........|-.|-++.+.+...+--. |+|.|..+|=.--=+.-..||-|..
T Consensus 311 hhL~PL~~F~Eip~~~~~~~~~Cf~C~~~~~~~~~y~C~~-Ck~~FCldCDv~iHesLh~CpgCeh 375 (378)
T KOG2807|consen 311 HHLFPLKPFVEIPETEYNGSRFCFACQGELLSSGRYRCES-CKNVFCLDCDVFIHESLHNCPGCEH 375 (378)
T ss_pred HhhcCCcchhhccccccCCCcceeeeccccCCCCcEEchh-ccceeeccchHHHHhhhhcCCCcCC
Confidence 3344544454443333445567999988888877777554 9999999996554455677999974
No 159
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=38.16 E-value=15 Score=25.78 Aligned_cols=38 Identities=18% Similarity=0.406 Sum_probs=21.3
Q ss_pred CCcccccccccccccCceeeeeCCCCCccChHhHHHHH
Q 044271 309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWL 346 (369)
Q Consensus 309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl 346 (369)
.+...|.+|..+|..-..-..-..||++|...|.....
T Consensus 7 ~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 7 SEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp GG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 34579999999997766555666799999999987544
No 160
>PF04639 Baculo_E56: Baculoviral E56 protein, specific to ODV envelope; InterPro: IPR006733 This family represents the E56 protein, which is localized to the occlusion derived virus (ODV) envelope, but not to the budded virus (BV) envelope []. Signals necessary for transport and/or retention into this structure are believed to be found within the C-terminal portion of ODV-E56.; GO: 0019031 viral envelope
Probab=37.96 E-value=41 Score=30.96 Aligned_cols=26 Identities=19% Similarity=-0.062 Sum_probs=15.9
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhceec
Q 044271 233 VFRILALSIAIPALICASAIGICACC 258 (369)
Q Consensus 233 ~~~ii~l~i~~~~l~~~~~~~~~~~~ 258 (369)
.+.-+++.+++++++++++++++.+.
T Consensus 276 ~l~piil~IG~vl~i~~Ig~~ifK~~ 301 (305)
T PF04639_consen 276 SLLPIILIIGGVLLIVFIGYFIFKRL 301 (305)
T ss_pred hhhHHHHHHHHHHHHHHhhheeeEee
Confidence 44455566666677777766665543
No 161
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=37.55 E-value=11 Score=36.24 Aligned_cols=51 Identities=24% Similarity=0.596 Sum_probs=0.0
Q ss_pred Cccccccccccc--------------ccC--ceeeeeCCCCCccChHhHHHHHhc---------CCCCCCcCCCCcC
Q 044271 310 NSSACPICLSEF--------------LSQ--ETIRCIPECKHCFHAECIDEWLRL---------NDKCPVCRNSATP 361 (369)
Q Consensus 310 ~~~~C~ICL~~~--------------~~~--~~~~~l~~C~H~fH~~Ci~~wl~~---------~~~CP~Cr~~~~~ 361 (369)
...+|++|+..= .+. -...--| |||+--+....-|-+. +..||.|-.+|..
T Consensus 327 ~~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~P-CGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 327 RSRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNP-CGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred ccccCCCccccCCceeEeeccccceeecCCCCceeecc-cccccchhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 367999999761 111 1334566 9999999999999864 4679999988764
No 162
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=37.43 E-value=22 Score=21.25 Aligned_cols=38 Identities=24% Similarity=0.517 Sum_probs=24.4
Q ss_pred cccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCc
Q 044271 313 ACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSAT 360 (369)
Q Consensus 313 ~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~ 360 (369)
.|+.|-+.+..++..... =+..||.+|+ .|..|+..|.
T Consensus 1 ~C~~C~~~i~~~~~~~~~--~~~~~H~~Cf--------~C~~C~~~L~ 38 (39)
T smart00132 1 KCAGCGKPIRGGELVLRA--LGKVWHPECF--------KCSKCGKPLG 38 (39)
T ss_pred CccccCCcccCCcEEEEe--CCccccccCC--------CCcccCCcCc
Confidence 377888887776333222 4688998775 4666666553
No 163
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=37.15 E-value=19 Score=31.61 Aligned_cols=43 Identities=26% Similarity=0.669 Sum_probs=33.5
Q ss_pred cccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcC
Q 044271 311 SSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCR 356 (369)
Q Consensus 311 ~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr 356 (369)
-..|-+|.+=.-.+.. ...|+-.+|..|+...+++...||.|-
T Consensus 181 lk~Cn~Ch~LvIqg~r---Cg~c~i~~h~~c~qty~q~~~~cphc~ 223 (235)
T KOG4718|consen 181 LKNCNLCHCLVIQGIR---CGSCNIQYHRGCIQTYLQRRDICPHCG 223 (235)
T ss_pred HHHHhHhHHHhheeec---cCcccchhhhHHHHHHhcccCcCCchh
Confidence 3689999876444332 224888999999999999999999993
No 164
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=36.88 E-value=18 Score=22.14 Aligned_cols=25 Identities=28% Similarity=0.862 Sum_probs=16.3
Q ss_pred cccccccccccCce--------eeeeCCCCCccC
Q 044271 313 ACPICLSEFLSQET--------IRCIPECKHCFH 338 (369)
Q Consensus 313 ~C~ICL~~~~~~~~--------~~~l~~C~H~fH 338 (369)
+|+=|...|...|. ++ .+.|+|.|+
T Consensus 4 ~Cp~C~~~y~i~d~~ip~~g~~v~-C~~C~~~f~ 36 (36)
T PF13717_consen 4 TCPNCQAKYEIDDEKIPPKGRKVR-CSKCGHVFF 36 (36)
T ss_pred ECCCCCCEEeCCHHHCCCCCcEEE-CCCCCCEeC
Confidence 67778888876553 33 335788875
No 165
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=36.45 E-value=9.1 Score=25.70 Aligned_cols=12 Identities=25% Similarity=0.769 Sum_probs=6.1
Q ss_pred CCCCCcCCCCcC
Q 044271 350 DKCPVCRNSATP 361 (369)
Q Consensus 350 ~~CP~Cr~~~~~ 361 (369)
..||+|.+++.+
T Consensus 21 ~~CPlC~r~l~~ 32 (54)
T PF04423_consen 21 GCCPLCGRPLDE 32 (54)
T ss_dssp EE-TTT--EE-H
T ss_pred CcCCCCCCCCCH
Confidence 389999988754
No 166
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=36.26 E-value=21 Score=33.09 Aligned_cols=52 Identities=27% Similarity=0.626 Sum_probs=41.6
Q ss_pred CCCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcCC
Q 044271 308 GPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPV 362 (369)
Q Consensus 308 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~~ 362 (369)
....+.|-||...+...... . .|.|.|...|...|....+.||.||.-+.+.
T Consensus 102 ~~~~~~~~~~~g~l~vpt~~--q-g~w~qf~~~~p~~~~~~~~~~~d~~~~~~pv 153 (324)
T KOG0824|consen 102 QQDHDICYICYGKLTVPTRI--Q-GCWHQFCYVCPKSNFAMGNDCPDCRGKISPV 153 (324)
T ss_pred cCCccceeeeeeeEEecccc--c-CceeeeeecCCchhhhhhhccchhhcCcCce
Confidence 44567899998887766553 2 3999999999999999999999999876554
No 167
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=36.17 E-value=17 Score=20.55 Aligned_cols=23 Identities=30% Similarity=0.655 Sum_probs=11.5
Q ss_pred cccccccccccCceeeeeCCCCCcc
Q 044271 313 ACPICLSEFLSQETIRCIPECKHCF 337 (369)
Q Consensus 313 ~C~ICL~~~~~~~~~~~l~~C~H~f 337 (369)
.|+-|-.++....+ ..|-|||.|
T Consensus 2 ~CP~C~~~V~~~~~--~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPESAK--FCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhhcC--cCCCCCCCC
Confidence 35555555433332 334466665
No 168
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=36.08 E-value=6.7 Score=30.68 Aligned_cols=9 Identities=33% Similarity=0.578 Sum_probs=0.0
Q ss_pred ecccccccc
Q 044271 257 CCTDRSRLG 265 (369)
Q Consensus 257 ~~~~R~~~~ 265 (369)
+++||...+
T Consensus 46 YckRRSGYk 54 (118)
T PF14991_consen 46 YCKRRSGYK 54 (118)
T ss_dssp ---------
T ss_pred eeeecchhh
Confidence 444444333
No 169
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=35.70 E-value=20 Score=24.76 Aligned_cols=13 Identities=23% Similarity=0.887 Sum_probs=10.1
Q ss_pred CCCCCCcCCCCcC
Q 044271 349 NDKCPVCRNSATP 361 (369)
Q Consensus 349 ~~~CP~Cr~~~~~ 361 (369)
...||+|+.+...
T Consensus 39 ~p~CPlC~s~M~~ 51 (59)
T PF14169_consen 39 EPVCPLCKSPMVS 51 (59)
T ss_pred CccCCCcCCcccc
Confidence 4679999998654
No 170
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=34.88 E-value=50 Score=27.94 Aligned_cols=20 Identities=20% Similarity=0.127 Sum_probs=8.5
Q ss_pred hHHHHHHHHHHHHHHHhhhh
Q 044271 235 RILALSIAIPALICASAIGI 254 (369)
Q Consensus 235 ~ii~l~i~~~~l~~~~~~~~ 254 (369)
..+++.+++.+++++.+++-
T Consensus 96 R~~~Vl~g~s~l~i~yfvir 115 (163)
T PF06679_consen 96 RALYVLVGLSALAILYFVIR 115 (163)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 171
>PTZ00208 65 kDa invariant surface glycoprotein; Provisional
Probab=34.60 E-value=35 Score=32.95 Aligned_cols=29 Identities=24% Similarity=0.305 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHhhhhceeccccccc
Q 044271 236 ILALSIAIPALICASAIGICACCTDRSRL 264 (369)
Q Consensus 236 ii~l~i~~~~l~~~~~~~~~~~~~~R~~~ 264 (369)
+|++++++.++|+++..+.++..-+|||.
T Consensus 387 ~i~~avl~p~~il~~~~~~~~~~v~rrr~ 415 (436)
T PTZ00208 387 MIILAVLVPAIILAIIAVAFFIMVKRRRN 415 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHhheeeeeccC
Confidence 44555666665555444433333333333
No 172
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=33.29 E-value=17 Score=27.04 Aligned_cols=9 Identities=44% Similarity=1.110 Sum_probs=4.3
Q ss_pred ecccccccc
Q 044271 257 CCTDRSRLG 265 (369)
Q Consensus 257 ~~~~R~~~~ 265 (369)
||+.|++.+
T Consensus 54 CC~kRkrsR 62 (94)
T PF05393_consen 54 CCKKRKRSR 62 (94)
T ss_pred HHHHhhhcc
Confidence 445444444
No 173
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=30.67 E-value=27 Score=34.71 Aligned_cols=38 Identities=24% Similarity=0.538 Sum_probs=31.2
Q ss_pred CCCcccccccccccccCceeeeeCCCCCccChHhHHHHHhc
Q 044271 308 GPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL 348 (369)
Q Consensus 308 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~ 348 (369)
......|-||.+.+.. .+..+. |+|.|...|+...+.+
T Consensus 67 ~~~~~~c~ic~~~~~~--~~~~~~-c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 67 KKGDVQCGICVESYDG--EIIGLG-CGHPFCPPCWTGYLGT 104 (444)
T ss_pred CCccccCCcccCCCcc--hhhhcC-CCcHHHHHHHHHHhhh
Confidence 3456899999999887 455565 9999999999999965
No 174
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=29.84 E-value=51 Score=27.18 Aligned_cols=8 Identities=50% Similarity=0.924 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 044271 236 ILALSIAI 243 (369)
Q Consensus 236 ii~l~i~~ 243 (369)
|+++++.+
T Consensus 122 ilaisvtv 129 (154)
T PF14914_consen 122 ILAISVTV 129 (154)
T ss_pred HHHHHHHH
Confidence 33333333
No 175
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=29.84 E-value=35 Score=22.88 Aligned_cols=24 Identities=33% Similarity=0.915 Sum_probs=16.0
Q ss_pred CCCCCccChHhHHHHHhcCCCCCCc
Q 044271 331 PECKHCFHAECIDEWLRLNDKCPVC 355 (369)
Q Consensus 331 ~~C~H~fH~~Ci~~wl~~~~~CP~C 355 (369)
+.|+|.|... |..-......||.|
T Consensus 32 ~~Cgh~w~~~-v~~R~~~~~~CP~C 55 (55)
T PF14311_consen 32 PKCGHEWKAS-VNDRTRRGKGCPYC 55 (55)
T ss_pred CCCCCeeEcc-HhhhccCCCCCCCC
Confidence 3578887765 33334667789988
No 176
>KOG1219 consensus Uncharacterized conserved protein, contains laminin, cadherin and EGF domains [Signal transduction mechanisms]
Probab=29.34 E-value=44 Score=39.87 Aligned_cols=17 Identities=18% Similarity=0.241 Sum_probs=11.8
Q ss_pred CCeeecccCCCcceEeecCC
Q 044271 203 GQICGFKSRNSQEIGCFNNS 222 (369)
Q Consensus 203 gG~Cg~~~~~~~~~~C~~~~ 222 (369)
||+|-.- ...|.|.|..
T Consensus 3953 gg~C~n~---~gsf~CncT~ 3969 (4289)
T KOG1219|consen 3953 GGQCINI---PGSFHCNCTP 3969 (4289)
T ss_pred Cceeecc---CCceEeccCh
Confidence 6777533 3579999976
No 177
>PTZ00046 rifin; Provisional
Probab=28.96 E-value=34 Score=32.75 Aligned_cols=35 Identities=11% Similarity=0.025 Sum_probs=23.0
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhceecccccccccc
Q 044271 233 VFRILALSIAIPALICASAIGICACCTDRSRLGSM 267 (369)
Q Consensus 233 ~~~ii~l~i~~~~l~~~~~~~~~~~~~~R~~~~~~ 267 (369)
.+..-++++++++|+.+++++++.|+|.+....+.
T Consensus 316 aIiaSiiAIvVIVLIMvIIYLILRYRRKKKMkKKL 350 (358)
T PTZ00046 316 AIIASIVAIVVIVLIMVIIYLILRYRRKKKMKKKL 350 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHH
Confidence 34555566667777777777777777776665533
No 178
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=28.88 E-value=25 Score=23.44 Aligned_cols=39 Identities=23% Similarity=0.529 Sum_probs=28.0
Q ss_pred ccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcCC
Q 044271 314 CPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPV 362 (369)
Q Consensus 314 C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~~ 362 (369)
|+-|-+.+..++.+... -+..||.+|+ +|-.|+.+|...
T Consensus 1 C~~C~~~I~~~~~~~~~--~~~~~H~~Cf--------~C~~C~~~l~~~ 39 (58)
T PF00412_consen 1 CARCGKPIYGTEIVIKA--MGKFWHPECF--------KCSKCGKPLNDG 39 (58)
T ss_dssp BTTTSSBESSSSEEEEE--TTEEEETTTS--------BETTTTCBTTTS
T ss_pred CCCCCCCccCcEEEEEe--CCcEEEcccc--------ccCCCCCccCCC
Confidence 67788888877665333 6789997765 588888877654
No 179
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=28.27 E-value=35 Score=32.55 Aligned_cols=34 Identities=15% Similarity=-0.014 Sum_probs=22.6
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhceeccccccccc
Q 044271 233 VFRILALSIAIPALICASAIGICACCTDRSRLGS 266 (369)
Q Consensus 233 ~~~ii~l~i~~~~l~~~~~~~~~~~~~~R~~~~~ 266 (369)
.+.+-++++++++++.+++++++.|+|.+....+
T Consensus 311 ~IiaSiIAIvvIVLIMvIIYLILRYRRKKKMkKK 344 (353)
T TIGR01477 311 PIIASIIAILIIVLIMVIIYLILRYRRKKKMKKK 344 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHH
Confidence 3555556666677777777777777777666553
No 180
>PF15179 Myc_target_1: Myc target protein 1
Probab=26.92 E-value=82 Score=27.03 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHhhhhceeccccc
Q 044271 237 LALSIAIPALICASAIGICACCTDRS 262 (369)
Q Consensus 237 i~l~i~~~~l~~~~~~~~~~~~~~R~ 262 (369)
+.+++++.+++..++.+++.|..|||
T Consensus 25 F~vSm~iGLviG~li~~LltwlSRRR 50 (197)
T PF15179_consen 25 FCVSMAIGLVIGALIWALLTWLSRRR 50 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33444444444444444444555444
No 181
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=26.54 E-value=14 Score=34.26 Aligned_cols=38 Identities=24% Similarity=0.519 Sum_probs=30.8
Q ss_pred ccccccccccccCceeeeeCCCCCccChHhHHHHHhcCC
Q 044271 312 SACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLND 350 (369)
Q Consensus 312 ~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~ 350 (369)
.+|.+|+++|..+......- |.-+||..|+-.|+....
T Consensus 215 rvC~~CF~el~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 252 (288)
T KOG1729|consen 215 RVCDICFEELEKGARGDRED-SLPVFHGKCYPNWLTTGA 252 (288)
T ss_pred eecHHHHHHHhcccccchhh-cccccccccccccccccc
Confidence 49999999998766666555 666999999999997644
No 182
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=26.36 E-value=45 Score=29.25 Aligned_cols=19 Identities=32% Similarity=0.331 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 044271 236 ILALSIAIPALICASAIGI 254 (369)
Q Consensus 236 ii~l~i~~~~l~~~~~~~~ 254 (369)
|.++.|+++++||.++++-
T Consensus 132 IClIIIAVLfLICT~LfLS 150 (227)
T PF05399_consen 132 ICLIIIAVLFLICTLLFLS 150 (227)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444455555555443
No 183
>PRK05978 hypothetical protein; Provisional
Probab=25.43 E-value=49 Score=27.52 Aligned_cols=28 Identities=29% Similarity=0.662 Sum_probs=21.6
Q ss_pred eCCC--CCccChHhHHHHHhcCCCCCCcCCCCcCC
Q 044271 330 IPEC--KHCFHAECIDEWLRLNDKCPVCRNSATPV 362 (369)
Q Consensus 330 l~~C--~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~~ 362 (369)
.|.| ||.|+ .+|+.+.+||.|-.++...
T Consensus 36 CP~CG~G~LF~-----g~Lkv~~~C~~CG~~~~~~ 65 (148)
T PRK05978 36 CPACGEGKLFR-----AFLKPVDHCAACGEDFTHH 65 (148)
T ss_pred CCCCCCCcccc-----cccccCCCccccCCccccC
Confidence 3446 58886 7889999999998877654
No 184
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=25.20 E-value=74 Score=32.81 Aligned_cols=8 Identities=25% Similarity=0.210 Sum_probs=3.8
Q ss_pred EEEeEEee
Q 044271 72 FFVRNINY 79 (369)
Q Consensus 72 ~~V~~I~~ 79 (369)
.+|++|..
T Consensus 57 Vqiln~t~ 64 (684)
T PF12877_consen 57 VQILNITQ 64 (684)
T ss_pred EEEEeeec
Confidence 34455544
No 185
>PHA02902 putative IMV membrane protein; Provisional
Probab=25.07 E-value=1.8e+02 Score=20.36 Aligned_cols=14 Identities=21% Similarity=0.475 Sum_probs=6.2
Q ss_pred CcccCCCCHHHHhh
Q 044271 281 PIMTVGLDESTIES 294 (369)
Q Consensus 281 ~~~~~g~~~~~~~~ 294 (369)
...+.-++.++++.
T Consensus 48 ~~F~D~lTpDQirA 61 (70)
T PHA02902 48 PLFKDSLTPDQIKA 61 (70)
T ss_pred chhhccCCHHHHHH
Confidence 33444444444443
No 186
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=25.01 E-value=45 Score=27.36 Aligned_cols=22 Identities=5% Similarity=-0.049 Sum_probs=10.0
Q ss_pred HHHHHHHHHHhhhhceeccccc
Q 044271 241 IAIPALICASAIGICACCTDRS 262 (369)
Q Consensus 241 i~~~~l~~~~~~~~~~~~~~R~ 262 (369)
++.++++++++.++--+.+.+.
T Consensus 39 vVliiiiivli~lcssRKkKaa 60 (189)
T PF05568_consen 39 VVLIIIIIVLIYLCSSRKKKAA 60 (189)
T ss_pred HHHHHHHHHHHHHHhhhhHHHH
Confidence 3344444444444544555443
No 187
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the COG1592 Rubrerythrin [Energy production and conversion]
Probab=24.09 E-value=45 Score=28.31 Aligned_cols=25 Identities=20% Similarity=0.618 Sum_probs=16.3
Q ss_pred eeeeCCCCCccChHhHHHHHhcCCCCCCcCCC
Q 044271 327 IRCIPECKHCFHAECIDEWLRLNDKCPVCRNS 358 (369)
Q Consensus 327 ~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~ 358 (369)
+.+.+.|||.+- + .-...||+|.++
T Consensus 134 ~~vC~vCGy~~~----g---e~P~~CPiCga~ 158 (166)
T COG1592 134 VWVCPVCGYTHE----G---EAPEVCPICGAP 158 (166)
T ss_pred EEEcCCCCCccc----C---CCCCcCCCCCCh
Confidence 555666888832 1 345679999765
No 189
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=23.83 E-value=48 Score=25.62 Aligned_cols=33 Identities=27% Similarity=0.649 Sum_probs=22.6
Q ss_pred cccccccccccccCceee-eeCCCCCccChHhHHHH
Q 044271 311 SSACPICLSEFLSQETIR-CIPECKHCFHAECIDEW 345 (369)
Q Consensus 311 ~~~C~ICL~~~~~~~~~~-~l~~C~H~fH~~Ci~~w 345 (369)
...|.||... .|..++ .-+.|...||..|....
T Consensus 55 ~~~C~iC~~~--~G~~i~C~~~~C~~~fH~~CA~~~ 88 (110)
T PF13832_consen 55 KLKCSICGKS--GGACIKCSHPGCSTAFHPTCARKA 88 (110)
T ss_pred CCcCcCCCCC--CceeEEcCCCCCCcCCCHHHHHHC
Confidence 4699999998 333332 11138889999998763
No 190
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=23.43 E-value=1e+02 Score=24.00 Aligned_cols=47 Identities=30% Similarity=0.577 Sum_probs=29.0
Q ss_pred cccccccccccccCceee----eeCCC---CCccChHhHHHHHhc---------CCCCCCcCC
Q 044271 311 SSACPICLSEFLSQETIR----CIPEC---KHCFHAECIDEWLRL---------NDKCPVCRN 357 (369)
Q Consensus 311 ~~~C~ICL~~~~~~~~~~----~l~~C---~H~fH~~Ci~~wl~~---------~~~CP~Cr~ 357 (369)
+..|..|...-.+....- ..+.| .=.|...||..++.. +..||.||.
T Consensus 7 g~~CHqCrqKt~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 7 GKTCHQCRQKTLDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred CCCchhhcCCCCCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 456777776433222110 12336 677999999888843 456999986
No 191
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=23.18 E-value=68 Score=18.42 Aligned_cols=29 Identities=24% Similarity=0.462 Sum_probs=9.8
Q ss_pred cccccccccccCceeeeeCCCCCccChHhH
Q 044271 313 ACPICLSEFLSQETIRCIPECKHCFHAECI 342 (369)
Q Consensus 313 ~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci 342 (369)
.|.+|-++... +..-.-..|.-.+|..|+
T Consensus 2 ~C~~C~~~~~~-~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDG-GWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S---EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCC-CceEECccCCCccChhcC
Confidence 47777777665 333333459999999885
No 192
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=23.16 E-value=1.6e+02 Score=20.04 Aligned_cols=47 Identities=26% Similarity=0.610 Sum_probs=33.0
Q ss_pred ccccccccccccCceeeeeCCC--CCccChHhHHHHHhcCCCCCCcCCCCcCC
Q 044271 312 SACPICLSEFLSQETIRCIPEC--KHCFHAECIDEWLRLNDKCPVCRNSATPV 362 (369)
Q Consensus 312 ~~C~ICL~~~~~~~~~~~l~~C--~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~~ 362 (369)
..|-.|-.++..+..-..+ | ..-|..+|.+..| +..||-|-.++...
T Consensus 6 pnCE~C~~dLp~~s~~A~I--CSfECTFC~~C~e~~l--~~~CPNCgGelv~R 54 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPEAYI--CSFECTFCADCAETML--NGVCPNCGGELVRR 54 (57)
T ss_pred CCccccCCCCCCCCCcceE--EeEeCcccHHHHHHHh--cCcCcCCCCccccC
Confidence 3566677776655522222 4 4679999999966 78899998887654
No 193
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=22.62 E-value=95 Score=20.66 Aligned_cols=8 Identities=0% Similarity=-0.346 Sum_probs=3.2
Q ss_pred cccccccc
Q 044271 258 CTDRSRLG 265 (369)
Q Consensus 258 ~~~R~~~~ 265 (369)
.+++..+.
T Consensus 24 ~K~ygYkh 31 (50)
T PF12606_consen 24 LKAYGYKH 31 (50)
T ss_pred hhcccccc
Confidence 34444443
No 194
>PLN02189 cellulose synthase
Probab=22.00 E-value=1.2e+02 Score=33.26 Aligned_cols=52 Identities=19% Similarity=0.404 Sum_probs=37.9
Q ss_pred CCcccccccccccc---cCceeeeeCCCCCccChHhHHHHH-hcCCCCCCcCCCCc
Q 044271 309 PNSSACPICLSEFL---SQETIRCIPECKHCFHAECIDEWL-RLNDKCPVCRNSAT 360 (369)
Q Consensus 309 ~~~~~C~ICL~~~~---~~~~~~~l~~C~H~fH~~Ci~~wl-~~~~~CP~Cr~~~~ 360 (369)
.....|.||-|+.. +|+.-....+|+--.++.|.+-=- ..+++||-|++...
T Consensus 32 ~~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 32 LDGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred ccCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 34579999999975 555555566688888999985422 34788999998754
No 195
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=21.60 E-value=70 Score=31.28 Aligned_cols=25 Identities=4% Similarity=0.012 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHhhhhceeccc
Q 044271 236 ILALSIAIPALICASAIGICACCTD 260 (369)
Q Consensus 236 ii~l~i~~~~l~~~~~~~~~~~~~~ 260 (369)
.|.+++++++..++-++.+++.+|.
T Consensus 371 GIsvavvvvVgglvGfLcWwf~crg 395 (397)
T PF03302_consen 371 GISVAVVVVVGGLVGFLCWWFICRG 395 (397)
T ss_pred eeeehhHHHHHHHHHHHhhheeecc
Confidence 3444444444444444444444443
No 196
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=21.48 E-value=56 Score=23.00 Aligned_cols=12 Identities=33% Similarity=1.079 Sum_probs=8.8
Q ss_pred ccChHhHHHHHh
Q 044271 336 CFHAECIDEWLR 347 (369)
Q Consensus 336 ~fH~~Ci~~wl~ 347 (369)
.|++.|+..|++
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 589999999985
No 197
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=21.45 E-value=81 Score=23.30 Aligned_cols=22 Identities=36% Similarity=0.283 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHhhhhcee
Q 044271 236 ILALSIAIPALICASAIGICAC 257 (369)
Q Consensus 236 ii~l~i~~~~l~~~~~~~~~~~ 257 (369)
++++..+++++++++++..+++
T Consensus 6 i~~iialiv~~iiaIvvW~iv~ 27 (81)
T PF00558_consen 6 ILAIIALIVALIIAIVVWTIVY 27 (81)
T ss_dssp --HHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555444433
No 198
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=21.20 E-value=97 Score=32.91 Aligned_cols=10 Identities=30% Similarity=0.969 Sum_probs=7.7
Q ss_pred CCcccccccC
Q 044271 31 IPVRFPFQLH 40 (369)
Q Consensus 31 ~~i~yPF~~~ 40 (369)
+-|.+||.++
T Consensus 41 ~~l~~~yrlg 50 (807)
T PF10577_consen 41 VLLKFPYRLG 50 (807)
T ss_pred EEEEEeccCC
Confidence 5688888775
No 199
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=20.91 E-value=24 Score=22.37 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=14.8
Q ss_pred CCCCccChHhHHHHHhcCCCCCCcCC
Q 044271 332 ECKHCFHAECIDEWLRLNDKCPVCRN 357 (369)
Q Consensus 332 ~C~H~fH~~Ci~~wl~~~~~CP~Cr~ 357 (369)
+|||.|...--..= .....||.|..
T Consensus 10 ~Cg~~fe~~~~~~~-~~~~~CP~Cg~ 34 (42)
T PF09723_consen 10 ECGHEFEVLQSISE-DDPVPCPECGS 34 (42)
T ss_pred CCCCEEEEEEEcCC-CCCCcCCCCCC
Confidence 48888775321110 24566999987
No 200
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=20.66 E-value=75 Score=23.75 Aligned_cols=24 Identities=17% Similarity=0.080 Sum_probs=11.4
Q ss_pred HHHHHHHHHhhhhce-ecccccccc
Q 044271 242 AIPALICASAIGICA-CCTDRSRLG 265 (369)
Q Consensus 242 ~~~~l~~~~~~~~~~-~~~~R~~~~ 265 (369)
+++++++++.++.+. +.+.|+-..
T Consensus 42 ~iFil~VilwfvCC~kRkrsRrPIY 66 (94)
T PF05393_consen 42 GIFILLVILWFVCCKKRKRSRRPIY 66 (94)
T ss_pred HHHHHHHHHHHHHHHHhhhccCCcc
Confidence 344455555555555 444444443
No 201
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=20.54 E-value=74 Score=21.13 Aligned_cols=36 Identities=19% Similarity=0.404 Sum_probs=27.6
Q ss_pred ccccccccccccCceeeeeCCCCCccChHhHHHHHh
Q 044271 312 SACPICLSEFLSQETIRCIPECKHCFHAECIDEWLR 347 (369)
Q Consensus 312 ~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~ 347 (369)
..|.+|-..|.....-.....||++|...|......
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCeee
Confidence 578899888877655555556999999999887654
No 202
>PF10868 DUF2667: Protein of unknown function (DUF2667); InterPro: IPR022618 This family of proteins with unknown function appears to be restricted to Arabidopsis thaliana.
Probab=20.08 E-value=59 Score=24.51 Aligned_cols=27 Identities=22% Similarity=0.508 Sum_probs=19.0
Q ss_pred CCChh-hhc-----CCCeeecccCCCcceEeec
Q 044271 194 PDCID-CEA-----RGQICGFKSRNSQEIGCFN 220 (369)
Q Consensus 194 ~~C~~-C~~-----sgG~Cg~~~~~~~~~~C~~ 220 (369)
.+|.+ |.+ .||+|.+.+.......|+|
T Consensus 45 ~~C~~~Ck~~~~~y~GG~C~~~~~~~~~~~C~C 77 (90)
T PF10868_consen 45 SDCNEPCKKFGSNYYGGQCVPVGPPPGDGVCYC 77 (90)
T ss_pred HHHHHHHHhhccCCCCceeccCCCCCCCcEEEE
Confidence 45774 763 5899999766455778876
Done!