Query 044271
Match_columns 369
No_of_seqs 235 out of 2355
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 22:53:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044271.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044271hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.7 6.2E-17 2.1E-21 123.3 8.7 82 279-362 9-90 (91)
2 1x4j_A Ring finger protein 38; 99.6 1.1E-16 3.9E-21 117.3 3.8 69 291-362 5-73 (75)
3 1iym_A EL5; ring-H2 finger, ub 99.6 1.7E-15 5.8E-20 103.9 4.1 52 309-360 3-54 (55)
4 2kiz_A E3 ubiquitin-protein li 99.5 6.4E-15 2.2E-19 106.0 6.2 56 308-364 11-66 (69)
5 2ect_A Ring finger protein 126 99.5 7.9E-15 2.7E-19 108.2 5.9 58 308-366 12-69 (78)
6 2ep4_A Ring finger protein 24; 99.5 1.1E-14 3.8E-19 106.2 6.0 55 309-364 13-67 (74)
7 2ecl_A Ring-box protein 2; RNF 99.5 6.6E-15 2.2E-19 109.4 4.3 53 310-362 14-77 (81)
8 2ecm_A Ring finger and CHY zin 99.4 7.4E-14 2.5E-18 95.6 4.4 51 309-360 3-54 (55)
9 3dpl_R Ring-box protein 1; ubi 99.4 7.8E-14 2.7E-18 108.5 4.0 51 309-360 35-100 (106)
10 3ng2_A RNF4, snurf, ring finge 99.4 1.9E-13 6.6E-18 98.7 4.2 56 308-364 7-66 (71)
11 2d8s_A Cellular modulator of i 99.4 2.6E-13 8.9E-18 100.0 4.6 53 308-362 12-71 (80)
12 1v87_A Deltex protein 2; ring- 99.4 4.3E-13 1.5E-17 106.3 5.8 52 310-362 24-95 (114)
13 2ea6_A Ring finger protein 4; 99.4 3.9E-13 1.3E-17 96.4 4.9 52 309-361 13-68 (69)
14 2xeu_A Ring finger protein 4; 99.3 3.6E-13 1.2E-17 95.1 3.6 52 310-362 2-57 (64)
15 4a0k_B E3 ubiquitin-protein li 99.3 9.8E-14 3.4E-18 109.4 -0.3 53 309-362 46-113 (117)
16 2ecn_A Ring finger protein 141 99.3 1.1E-12 3.6E-17 94.5 2.7 51 309-364 13-63 (70)
17 1chc_A Equine herpes virus-1 r 99.3 2.1E-12 7.1E-17 92.4 3.8 50 309-361 3-52 (68)
18 2d8t_A Dactylidin, ring finger 99.3 2.4E-12 8.3E-17 92.9 3.6 50 308-361 12-61 (71)
19 2djb_A Polycomb group ring fin 99.2 9.2E-12 3.1E-16 90.1 6.0 52 309-363 13-64 (72)
20 2ct0_A Non-SMC element 1 homol 99.2 1.2E-11 4.1E-16 89.1 6.4 51 308-361 12-64 (74)
21 2ct2_A Tripartite motif protei 99.2 2.1E-11 7.1E-16 91.7 5.9 53 309-362 13-69 (88)
22 2ecy_A TNF receptor-associated 99.1 6E-11 2E-15 84.2 5.7 50 309-362 13-63 (66)
23 2csy_A Zinc finger protein 183 99.1 5.7E-11 1.9E-15 87.9 5.1 48 309-360 13-60 (81)
24 2yur_A Retinoblastoma-binding 99.1 1.2E-10 4E-15 84.7 5.7 50 309-361 13-64 (74)
25 4ap4_A E3 ubiquitin ligase RNF 99.1 5E-11 1.7E-15 96.7 4.1 53 309-362 5-61 (133)
26 2ysl_A Tripartite motif-contai 99.1 1.2E-10 3.9E-15 84.4 5.2 50 309-362 18-70 (73)
27 1g25_A CDK-activating kinase a 99.0 1.6E-10 5.5E-15 81.7 4.7 51 311-362 3-56 (65)
28 4ayc_A E3 ubiquitin-protein li 99.0 1.1E-10 3.9E-15 95.5 3.9 47 311-361 53-99 (138)
29 4ap4_A E3 ubiquitin ligase RNF 99.0 1.2E-10 4.2E-15 94.4 3.6 53 309-362 70-126 (133)
30 3lrq_A E3 ubiquitin-protein li 99.0 1.1E-10 3.7E-15 90.1 2.9 48 311-361 22-70 (100)
31 2y43_A E3 ubiquitin-protein li 99.0 1.5E-10 5E-15 89.2 3.4 48 311-361 22-69 (99)
32 2ecj_A Tripartite motif-contai 99.0 3.2E-10 1.1E-14 78.0 4.5 43 309-355 13-58 (58)
33 2ecw_A Tripartite motif-contai 99.0 4.3E-10 1.5E-14 83.7 5.4 50 309-362 17-72 (85)
34 1t1h_A Gspef-atpub14, armadill 99.0 5E-10 1.7E-14 82.1 4.9 50 309-362 6-56 (78)
35 2egp_A Tripartite motif-contai 99.0 2.4E-10 8.2E-15 84.0 3.0 50 309-362 10-66 (79)
36 2ckl_A Polycomb group ring fin 99.0 4E-10 1.4E-14 88.2 4.4 50 310-362 14-63 (108)
37 2ecv_A Tripartite motif-contai 98.9 9.4E-10 3.2E-14 81.8 5.9 51 309-363 17-73 (85)
38 2ysj_A Tripartite motif-contai 98.9 7.5E-10 2.6E-14 77.6 5.0 43 309-355 18-63 (63)
39 2ckl_B Ubiquitin ligase protei 98.9 9.5E-10 3.3E-14 92.8 5.0 49 310-361 53-102 (165)
40 3fl2_A E3 ubiquitin-protein li 98.8 1.9E-09 6.5E-14 86.5 4.0 47 311-361 52-99 (124)
41 3ztg_A E3 ubiquitin-protein li 98.8 5.3E-09 1.8E-13 79.1 5.8 49 309-360 11-61 (92)
42 1jm7_A BRCA1, breast cancer ty 98.8 3.5E-09 1.2E-13 83.2 4.9 49 311-363 21-72 (112)
43 2vje_A E3 ubiquitin-protein li 98.8 1.9E-09 6.6E-14 75.8 3.0 51 308-361 5-57 (64)
44 3hct_A TNF receptor-associated 98.8 3.3E-09 1.1E-13 84.3 3.7 50 309-362 16-66 (118)
45 1e4u_A Transcriptional repress 98.8 1E-08 3.5E-13 74.9 6.0 55 308-363 8-64 (78)
46 1vyx_A ORF K3, K3RING; zinc-bi 98.8 5.9E-09 2E-13 72.0 4.4 49 308-360 3-58 (60)
47 1bor_A Transcription factor PM 98.7 4.6E-09 1.6E-13 71.7 2.6 49 309-364 4-52 (56)
48 1z6u_A NP95-like ring finger p 98.7 5.8E-09 2E-13 86.4 3.7 48 311-362 78-126 (150)
49 1rmd_A RAG1; V(D)J recombinati 98.7 4.3E-09 1.5E-13 83.3 2.7 48 311-362 23-71 (116)
50 3l11_A E3 ubiquitin-protein li 98.7 2.4E-09 8.1E-14 84.7 0.7 48 309-360 13-61 (115)
51 2y1n_A E3 ubiquitin-protein li 98.7 1E-08 3.5E-13 96.8 4.4 48 311-362 332-380 (389)
52 2vje_B MDM4 protein; proto-onc 98.7 1.1E-08 3.7E-13 71.7 3.2 51 309-361 5-56 (63)
53 3k1l_B Fancl; UBC, ring, RWD, 98.6 7.1E-09 2.4E-13 94.9 1.9 53 309-361 306-373 (381)
54 3knv_A TNF receptor-associated 98.5 1.3E-08 4.5E-13 83.3 0.9 48 309-360 29-77 (141)
55 4ic3_A E3 ubiquitin-protein li 98.5 2.8E-08 9.5E-13 71.9 2.0 43 311-361 24-67 (74)
56 2kr4_A Ubiquitin conjugation f 98.5 7.5E-08 2.6E-12 71.6 4.2 50 309-362 12-61 (85)
57 1jm7_B BARD1, BRCA1-associated 98.5 3.3E-08 1.1E-12 78.3 2.1 46 311-361 22-67 (117)
58 2kre_A Ubiquitin conjugation f 98.4 1.5E-07 5.1E-12 72.2 4.6 50 309-362 27-76 (100)
59 1wgm_A Ubiquitin conjugation f 98.4 1.8E-07 6.1E-12 71.5 4.8 50 309-362 20-70 (98)
60 1wim_A KIAA0161 protein; ring 98.3 1.6E-07 5.4E-12 71.3 2.6 48 310-358 4-61 (94)
61 3hcs_A TNF receptor-associated 98.3 1.9E-07 6.4E-12 79.0 2.8 50 309-362 16-66 (170)
62 2ea5_A Cell growth regulator w 98.3 4.7E-07 1.6E-11 64.2 4.2 45 309-361 13-58 (68)
63 2ecg_A Baculoviral IAP repeat- 98.3 2E-07 6.9E-12 67.5 2.2 44 311-362 25-69 (75)
64 2yu4_A E3 SUMO-protein ligase 98.1 1.2E-06 4.2E-11 66.3 3.5 47 309-358 5-59 (94)
65 2yho_A E3 ubiquitin-protein li 98.1 7.2E-07 2.5E-11 65.2 1.7 43 311-361 18-61 (79)
66 2bay_A PRE-mRNA splicing facto 98.0 2E-06 7E-11 59.4 2.2 49 311-362 3-51 (61)
67 2c2l_A CHIP, carboxy terminus 98.0 3.7E-06 1.3E-10 76.6 4.2 50 308-361 205-255 (281)
68 2f42_A STIP1 homology and U-bo 97.8 8.1E-06 2.8E-10 68.9 3.1 51 308-362 103-154 (179)
69 3t6p_A Baculoviral IAP repeat- 97.8 5.9E-06 2E-10 77.4 1.9 43 311-361 295-338 (345)
70 3htk_C E3 SUMO-protein ligase 97.8 1E-05 3.4E-10 71.9 2.9 50 309-361 179-232 (267)
71 3vk6_A E3 ubiquitin-protein li 97.7 3.9E-05 1.3E-09 57.3 4.3 45 314-361 4-49 (101)
72 3nw0_A Non-structural maintena 97.5 7.6E-05 2.6E-09 66.2 5.2 50 310-362 179-230 (238)
73 2lri_C Autoimmune regulator; Z 95.2 0.02 6.8E-07 39.7 4.1 51 309-363 10-64 (66)
74 2ko5_A Ring finger protein Z; 94.3 0.026 8.8E-07 41.3 2.7 48 309-362 26-74 (99)
75 2jun_A Midline-1; B-BOX, TRIM, 88.4 0.21 7E-06 37.4 2.1 35 311-346 3-38 (101)
76 1wil_A KIAA1045 protein; ring 85.3 1.1 3.7E-05 32.1 4.2 48 308-357 12-75 (89)
77 1fp0_A KAP-1 corepressor; PHD 85.1 0.58 2E-05 34.1 2.9 49 308-360 22-74 (88)
78 2ysm_A Myeloid/lymphoid or mix 84.4 0.27 9.1E-06 37.7 0.8 48 308-356 4-55 (111)
79 2l5u_A Chromodomain-helicase-D 84.1 0.45 1.5E-05 32.1 1.8 47 308-358 8-58 (61)
80 1mm2_A MI2-beta; PHD, zinc fin 84.0 0.38 1.3E-05 32.5 1.4 49 308-360 6-58 (61)
81 1we9_A PHD finger family prote 83.8 0.24 8.3E-06 33.7 0.3 50 309-358 4-58 (64)
82 2l2t_A Receptor tyrosine-prote 82.5 1 3.6E-05 28.1 2.8 13 244-256 20-32 (44)
83 1f62_A Transcription factor WS 82.4 0.6 2E-05 30.1 1.8 44 313-357 2-49 (51)
84 3lqh_A Histone-lysine N-methyl 78.3 0.82 2.8E-05 38.3 1.7 49 311-359 2-64 (183)
85 3u5n_A E3 ubiquitin-protein li 77.8 0.69 2.3E-05 39.6 1.2 48 308-359 4-55 (207)
86 2k16_A Transcription initiatio 76.8 0.76 2.6E-05 32.3 1.0 51 309-360 16-70 (75)
87 2lbm_A Transcriptional regulat 76.5 3 0.0001 33.3 4.4 47 308-358 60-117 (142)
88 2jwa_A Receptor tyrosine-prote 76.4 3.2 0.00011 25.8 3.6 17 246-262 23-39 (44)
89 1wev_A Riken cDNA 1110020M19; 75.9 0.26 8.9E-06 36.1 -1.8 50 310-359 15-73 (88)
90 2yql_A PHD finger protein 21A; 75.8 0.33 1.1E-05 32.2 -1.2 46 308-357 6-55 (56)
91 3v43_A Histone acetyltransfera 73.7 0.94 3.2E-05 34.6 0.9 46 312-357 62-111 (112)
92 3v43_A Histone acetyltransfera 73.5 4.5 0.00016 30.7 4.7 46 311-356 5-62 (112)
93 2l43_A N-teminal domain from h 73.1 0.98 3.4E-05 32.9 0.8 53 309-361 23-78 (88)
94 3ql9_A Transcriptional regulat 72.8 4.2 0.00014 31.8 4.4 47 308-358 54-111 (129)
95 1xwh_A Autoimmune regulator; P 72.4 0.61 2.1E-05 32.0 -0.5 46 308-357 5-54 (66)
96 1wep_A PHF8; structural genomi 72.3 4.1 0.00014 28.8 4.0 50 309-359 10-64 (79)
97 2ku3_A Bromodomain-containing 71.9 1.1 3.9E-05 31.1 0.9 50 308-357 13-65 (71)
98 2vpb_A Hpygo1, pygopus homolog 71.6 2.7 9.1E-05 28.7 2.7 35 309-343 6-41 (65)
99 2puy_A PHD finger protein 21A; 71.1 0.24 8.3E-06 33.3 -2.8 47 310-360 4-54 (60)
100 3shb_A E3 ubiquitin-protein li 70.3 0.71 2.4E-05 32.8 -0.5 45 313-358 28-77 (77)
101 2kwj_A Zinc finger protein DPF 68.4 3 0.0001 31.9 2.6 45 312-356 2-59 (114)
102 1weo_A Cellulose synthase, cat 66.1 22 0.00074 25.7 6.5 52 309-360 14-69 (93)
103 2kgg_A Histone demethylase jar 65.6 1.9 6.6E-05 27.8 0.9 44 313-356 4-52 (52)
104 2e6r_A Jumonji/ARID domain-con 65.0 0.8 2.7E-05 33.7 -1.2 48 309-357 14-65 (92)
105 2e6s_A E3 ubiquitin-protein li 62.4 1.6 5.5E-05 30.9 0.0 46 311-357 26-76 (77)
106 1iij_A ERBB-2 receptor protein 61.9 4.9 0.00017 23.7 2.0 25 237-261 10-34 (35)
107 3asl_A E3 ubiquitin-protein li 61.3 1.9 6.6E-05 29.8 0.3 45 313-358 20-69 (70)
108 2yt5_A Metal-response element- 60.8 4 0.00014 27.6 1.8 50 309-358 4-61 (66)
109 1wem_A Death associated transc 59.0 2.6 9E-05 29.6 0.7 49 311-361 16-73 (76)
110 2lv9_A Histone-lysine N-methyl 57.9 3.4 0.00012 30.6 1.1 45 312-358 29-76 (98)
111 2ri7_A Nucleosome-remodeling f 55.6 2.2 7.6E-05 35.1 -0.2 48 309-357 6-58 (174)
112 2l8s_A Integrin alpha-1; trans 49.0 23 0.00079 23.0 3.8 22 235-256 10-32 (54)
113 2ysm_A Myeloid/lymphoid or mix 48.6 3.3 0.00011 31.4 -0.3 47 313-360 56-106 (111)
114 4gne_A Histone-lysine N-methyl 48.5 17 0.00059 27.3 3.7 47 308-359 12-63 (107)
115 3f6q_B LIM and senescent cell 48.5 10 0.00035 25.5 2.4 42 310-361 10-51 (72)
116 2pk7_A Uncharacterized protein 48.0 4.1 0.00014 28.1 0.2 20 342-361 1-20 (69)
117 1wen_A Inhibitor of growth fam 47.9 13 0.00044 25.7 2.7 45 310-359 15-66 (71)
118 1weu_A Inhibitor of growth fam 47.8 15 0.00051 26.8 3.2 46 310-360 35-87 (91)
119 2jny_A Uncharacterized BCR; st 47.8 3.3 0.00011 28.4 -0.4 20 342-361 3-22 (67)
120 2cs3_A Protein C14ORF4, MY039 46.8 34 0.0012 24.1 4.6 41 308-348 12-52 (93)
121 1z2q_A LM5-1; membrane protein 45.5 16 0.00054 26.0 3.0 38 308-345 18-55 (84)
122 2yw8_A RUN and FYVE domain-con 44.0 16 0.00055 25.9 2.8 37 309-345 17-53 (82)
123 2cu8_A Cysteine-rich protein 2 44.0 12 0.00041 25.7 2.2 42 310-362 8-49 (76)
124 1wee_A PHD finger family prote 43.7 2.7 9.3E-05 29.2 -1.3 49 310-359 15-67 (72)
125 2co8_A NEDD9 interacting prote 43.0 23 0.0008 24.7 3.6 43 309-362 13-55 (82)
126 1x4l_A Skeletal muscle LIM-pro 42.4 19 0.00065 24.3 3.0 41 311-361 5-47 (72)
127 2xb1_A Pygopus homolog 2, B-ce 42.2 13 0.00044 27.8 2.2 50 311-360 3-63 (105)
128 3t7l_A Zinc finger FYVE domain 42.1 16 0.00054 26.4 2.6 37 310-346 19-55 (90)
129 3ask_A E3 ubiquitin-protein li 41.9 5.9 0.0002 34.2 0.2 47 311-358 174-225 (226)
130 1x4k_A Skeletal muscle LIM-pro 41.4 11 0.00039 25.4 1.7 42 311-362 5-46 (72)
131 2l2t_A Receptor tyrosine-prote 41.3 41 0.0014 20.8 4.0 26 233-258 12-37 (44)
132 1x4u_A Zinc finger, FYVE domai 40.9 18 0.0006 25.8 2.6 38 308-345 11-48 (84)
133 1zfo_A LAsp-1; LIM domain, zin 39.3 9.1 0.00031 21.6 0.7 28 312-342 4-31 (31)
134 1wyh_A SLIM 2, skeletal muscle 38.9 13 0.00043 25.2 1.6 41 311-361 5-45 (72)
135 1g47_A Pinch protein; LIM doma 38.9 13 0.00046 25.4 1.7 43 309-361 9-51 (77)
136 2dj7_A Actin-binding LIM prote 38.6 29 0.001 24.1 3.5 40 310-360 14-53 (80)
137 2kpi_A Uncharacterized protein 38.5 3 0.0001 27.5 -1.7 19 342-360 3-21 (56)
138 1y02_A CARP2, FYVE-ring finger 37.2 4.2 0.00014 31.4 -1.3 49 308-356 16-64 (120)
139 1joc_A EEA1, early endosomal a 37.0 20 0.00069 27.7 2.6 36 310-345 68-103 (125)
140 2jr6_A UPF0434 protein NMA0874 36.8 3.9 0.00013 28.1 -1.4 19 343-361 2-20 (68)
141 3o70_A PHD finger protein 13; 36.6 5.1 0.00017 27.5 -0.8 47 309-357 17-66 (68)
142 2knc_A Integrin alpha-IIB; tra 36.5 52 0.0018 21.3 4.1 17 234-250 12-28 (54)
143 1x61_A Thyroid receptor intera 36.4 19 0.00066 24.2 2.2 40 311-360 5-44 (72)
144 1iml_A CRIP, cysteine rich int 36.4 9.5 0.00032 26.3 0.6 14 311-324 27-40 (76)
145 1wew_A DNA-binding family prot 36.4 9.8 0.00034 26.7 0.6 49 310-359 15-73 (78)
146 1x63_A Skeletal muscle LIM-pro 35.7 23 0.00078 24.6 2.6 41 311-361 15-55 (82)
147 1vfy_A Phosphatidylinositol-3- 35.5 27 0.00091 24.0 2.8 34 311-344 11-44 (73)
148 2d8y_A Eplin protein; LIM doma 33.4 26 0.00089 24.9 2.6 40 311-361 15-54 (91)
149 2hf1_A Tetraacyldisaccharide-1 33.3 3.9 0.00013 28.1 -1.8 19 343-361 2-20 (68)
150 1wfk_A Zinc finger, FYVE domai 33.0 25 0.00086 25.3 2.4 37 309-345 7-43 (88)
151 3m62_A Ubiquitin conjugation f 32.9 29 0.001 36.4 3.7 51 308-362 888-939 (968)
152 2d8x_A Protein pinch; LIM doma 31.9 26 0.0009 23.4 2.3 40 311-362 5-44 (70)
153 3mjh_B Early endosome antigen 31.9 6.1 0.00021 23.1 -0.9 16 311-326 5-20 (34)
154 2gmg_A Hypothetical protein PF 30.8 10 0.00035 28.3 -0.0 23 332-359 72-94 (105)
155 1x68_A FHL5 protein; four-and- 30.6 29 0.001 23.6 2.4 40 311-360 5-46 (76)
156 2js4_A UPF0434 protein BB2007; 30.5 4.4 0.00015 28.1 -2.0 19 343-361 2-20 (70)
157 2kwj_A Zinc finger protein DPF 30.4 4.9 0.00017 30.7 -2.0 46 312-358 59-108 (114)
158 2vnf_A ING 4, P29ING4, inhibit 30.4 9.6 0.00033 25.3 -0.2 42 311-357 10-58 (60)
159 3c6w_A P28ING5, inhibitor of g 28.4 12 0.0004 24.8 -0.1 43 310-357 8-57 (59)
160 1a7i_A QCRP2 (LIM1); LIM domai 28.1 11 0.00039 26.2 -0.2 40 311-361 7-46 (81)
161 1z60_A TFIIH basal transcripti 25.9 41 0.0014 22.3 2.2 43 312-355 16-58 (59)
162 2k1a_A Integrin alpha-IIB; sin 25.4 1.2E+02 0.0039 18.5 4.0 17 234-250 10-26 (42)
163 1x62_A C-terminal LIM domain p 25.4 55 0.0019 22.4 3.1 38 311-360 15-52 (79)
164 3u7u_G Neuregulin 1; signaling 25.1 37 0.0013 22.0 1.9 32 196-227 8-45 (55)
165 1dvp_A HRS, hepatocyte growth 24.7 33 0.0011 29.2 2.1 35 311-345 161-195 (220)
166 2g6q_A Inhibitor of growth pro 24.5 15 0.00051 24.6 -0.1 42 311-357 11-59 (62)
167 2cor_A Pinch protein; LIM doma 24.3 79 0.0027 21.6 3.7 40 310-361 14-53 (79)
168 3o7a_A PHD finger protein 13 v 24.0 9.3 0.00032 24.4 -1.2 41 316-357 8-51 (52)
169 3zyq_A Hepatocyte growth facto 23.5 38 0.0013 29.0 2.3 35 311-345 164-198 (226)
170 2rgt_A Fusion of LIM/homeobox 23.3 42 0.0014 27.0 2.4 34 312-346 94-127 (169)
171 1nyp_A Pinch protein; LIM doma 23.1 25 0.00086 23.1 0.8 39 311-361 5-43 (66)
172 1zbd_B Rabphilin-3A; G protein 21.7 44 0.0015 26.1 2.1 35 309-343 53-88 (134)
173 2ehe_A Four and A half LIM dom 21.1 41 0.0014 23.2 1.7 41 311-361 15-55 (82)
174 2jvx_A NF-kappa-B essential mo 20.4 25 0.00084 19.5 0.3 12 349-360 3-14 (28)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.69 E-value=6.2e-17 Score=123.26 Aligned_cols=82 Identities=27% Similarity=0.681 Sum_probs=70.6
Q ss_pred CCCcccCCCCHHHHhhccceeeccCCCCCCCCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCC
Q 044271 279 QPPIMTVGLDESTIESFQKLVLGESKRLPGPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNS 358 (369)
Q Consensus 279 ~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~ 358 (369)
.......|++++.++.+|.+.+..... ....+..|+|||++|..++.++.+| |+|.||..||+.|++.+.+||+||.+
T Consensus 9 ~~~~~~~~~s~~~i~~lp~~~~~~~~~-~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~ 86 (91)
T 2l0b_A 9 SHMVANPPASKESIDALPEILVTEDHG-AVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCM 86 (91)
T ss_dssp CCSSCCCCCCHHHHHTSCEEECCTTCS-SSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCCB
T ss_pred CCCcCCCCCCHHHHHhCCCeeeccccc-ccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCcc
Confidence 345566799999999999998876432 2456789999999999999999999 99999999999999999999999998
Q ss_pred CcCC
Q 044271 359 ATPV 362 (369)
Q Consensus 359 ~~~~ 362 (369)
+.+.
T Consensus 87 ~~~~ 90 (91)
T 2l0b_A 87 FPPP 90 (91)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 8653
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.1e-16 Score=117.28 Aligned_cols=69 Identities=30% Similarity=0.866 Sum_probs=58.7
Q ss_pred HHhhccceeeccCCCCCCCCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcCC
Q 044271 291 TIESFQKLVLGESKRLPGPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPV 362 (369)
Q Consensus 291 ~~~~~p~~~~~~~~~~~~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~~ 362 (369)
.++.+|.+.+.... ...++.+|+||+++|..++.++.+| |+|.||..||+.|++.+.+||+||+++.+.
T Consensus 5 ~i~~lp~~~~~~~~--~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 5 SSGQLPSYRFNPNN--HQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp CCSSCCCEEBCSSS--CSSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred hHhhCCcEEecCcc--ccCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 34567777776533 2356789999999999999999999 999999999999999999999999998765
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.56 E-value=1.7e-15 Score=103.91 Aligned_cols=52 Identities=40% Similarity=0.995 Sum_probs=47.7
Q ss_pred CCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCc
Q 044271 309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSAT 360 (369)
Q Consensus 309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~ 360 (369)
+++.+|+||++++.+++.+..++.|+|.||..||++|++.+.+||+||+++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 3467999999999999998888779999999999999999999999999874
No 4
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.54 E-value=6.4e-15 Score=106.01 Aligned_cols=56 Identities=39% Similarity=0.887 Sum_probs=50.4
Q ss_pred CCCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcCCCC
Q 044271 308 GPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPVHA 364 (369)
Q Consensus 308 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~~~~ 364 (369)
...+..|+||+++|..++.++.++ |+|.||..||..|++.+.+||+||..+.....
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQLP 66 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCSCCC
T ss_pred CCCCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccCcCC
Confidence 445689999999999999999999 99999999999999999999999999877643
No 5
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.53 E-value=7.9e-15 Score=108.19 Aligned_cols=58 Identities=38% Similarity=0.917 Sum_probs=51.5
Q ss_pred CCCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcCCCCCC
Q 044271 308 GPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPVHASS 366 (369)
Q Consensus 308 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~~~~~~ 366 (369)
...+.+|+||+++|..++.++.++ |+|.||..||..|++.+.+||+||..+.......
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 69 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTAT 69 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCC
T ss_pred CCCCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCcccCC
Confidence 345689999999999999999998 9999999999999999999999999987765544
No 6
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=1.1e-14 Score=106.25 Aligned_cols=55 Identities=29% Similarity=0.855 Sum_probs=49.6
Q ss_pred CCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcCCCC
Q 044271 309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPVHA 364 (369)
Q Consensus 309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~~~~ 364 (369)
..+..|+||+++|..++.++.++ |+|.||..||+.|++.+.+||+||+++.....
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQ 67 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSSCCS
T ss_pred CCCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCcccccccc
Confidence 45689999999999999999999 99999999999999999999999999865543
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=6.6e-15 Score=109.39 Aligned_cols=53 Identities=26% Similarity=0.819 Sum_probs=43.6
Q ss_pred Cccccccccccccc-----------CceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcCC
Q 044271 310 NSSACPICLSEFLS-----------QETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPV 362 (369)
Q Consensus 310 ~~~~C~ICL~~~~~-----------~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~~ 362 (369)
+++.|+||+++|.+ ++.++.++.|+|.||.+||++||+.+.+||+||+++...
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 45678888887754 565667767999999999999999999999999987643
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.43 E-value=7.4e-14 Score=95.59 Aligned_cols=51 Identities=33% Similarity=0.893 Sum_probs=44.1
Q ss_pred CCcccccccccccccCc-eeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCc
Q 044271 309 PNSSACPICLSEFLSQE-TIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSAT 360 (369)
Q Consensus 309 ~~~~~C~ICL~~~~~~~-~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~ 360 (369)
..+.+|+||++++.+++ .++.++ |+|.||..||+.|++.+.+||+||+++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 34679999999997654 466677 9999999999999999999999999875
No 9
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.41 E-value=7.8e-14 Score=108.53 Aligned_cols=51 Identities=27% Similarity=0.643 Sum_probs=43.6
Q ss_pred CCcccccccccccccCc---------------eeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCc
Q 044271 309 PNSSACPICLSEFLSQE---------------TIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSAT 360 (369)
Q Consensus 309 ~~~~~C~ICL~~~~~~~---------------~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~ 360 (369)
..++.|+||+++|.+.- .++.++ |+|.||..||+.||+.+.+||+||++..
T Consensus 35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 35789999999998651 356677 9999999999999999999999999854
No 10
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.39 E-value=1.9e-13 Score=98.68 Aligned_cols=56 Identities=25% Similarity=0.683 Sum_probs=47.3
Q ss_pred CCCcccccccccccccC----ceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcCCCC
Q 044271 308 GPNSSACPICLSEFLSQ----ETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPVHA 364 (369)
Q Consensus 308 ~~~~~~C~ICL~~~~~~----~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~~~~ 364 (369)
..++..|+||++++.+. +.+..++ |||.||..||+.|++.+.+||+||.++.....
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 66 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccChhhe
Confidence 34578999999999764 5556777 99999999999999999999999999876543
No 11
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=2.6e-13 Score=99.96 Aligned_cols=53 Identities=23% Similarity=0.652 Sum_probs=44.9
Q ss_pred CCCcccccccccccccCceeeeeCCCC-----CccChHhHHHHHhcC--CCCCCcCCCCcCC
Q 044271 308 GPNSSACPICLSEFLSQETIRCIPECK-----HCFHAECIDEWLRLN--DKCPVCRNSATPV 362 (369)
Q Consensus 308 ~~~~~~C~ICL~~~~~~~~~~~l~~C~-----H~fH~~Ci~~wl~~~--~~CP~Cr~~~~~~ 362 (369)
...+..|+|||++|.+++.+ ++| |+ |.||.+||++||+.+ .+||+||+++...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 34568999999999988877 488 96 999999999999875 5899999988543
No 12
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.37 E-value=4.3e-13 Score=106.33 Aligned_cols=52 Identities=23% Similarity=0.518 Sum_probs=42.7
Q ss_pred CcccccccccccccCc---------------eeeeeCCCCCccChHhHHHHH-----hcCCCCCCcCCCCcCC
Q 044271 310 NSSACPICLSEFLSQE---------------TIRCIPECKHCFHAECIDEWL-----RLNDKCPVCRNSATPV 362 (369)
Q Consensus 310 ~~~~C~ICL~~~~~~~---------------~~~~l~~C~H~fH~~Ci~~wl-----~~~~~CP~Cr~~~~~~ 362 (369)
.++.|+|||++|.++. .++.++ |+|.||..||+.|+ +.+.+||+||+.+...
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 3579999999997654 344666 99999999999999 4578999999987544
No 13
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=3.9e-13 Score=96.43 Aligned_cols=52 Identities=27% Similarity=0.767 Sum_probs=44.7
Q ss_pred CCcccccccccccccC----ceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcC
Q 044271 309 PNSSACPICLSEFLSQ----ETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATP 361 (369)
Q Consensus 309 ~~~~~C~ICL~~~~~~----~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~ 361 (369)
.+...|+||++++.+. +.+..++ |+|.||..||+.|++.+.+||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 4568999999999864 4446677 99999999999999999999999998754
No 14
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.35 E-value=3.6e-13 Score=95.11 Aligned_cols=52 Identities=27% Similarity=0.731 Sum_probs=45.1
Q ss_pred CcccccccccccccC----ceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcCC
Q 044271 310 NSSACPICLSEFLSQ----ETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPV 362 (369)
Q Consensus 310 ~~~~C~ICL~~~~~~----~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~~ 362 (369)
++.+|+||++++.+. +.+..++ |||.||..||..|++.+.+||+||.++...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 357999999999864 4556777 999999999999999999999999998764
No 15
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.33 E-value=9.8e-14 Score=109.44 Aligned_cols=53 Identities=28% Similarity=0.627 Sum_probs=1.6
Q ss_pred CCcccccccccccccC-------------c--eeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcCC
Q 044271 309 PNSSACPICLSEFLSQ-------------E--TIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPV 362 (369)
Q Consensus 309 ~~~~~C~ICL~~~~~~-------------~--~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~~ 362 (369)
..++.|+||+++|.+. + .+..++ |+|.||..||++||+.+.+||+||++...+
T Consensus 46 ~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~-C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~~ 113 (117)
T 4a0k_B 46 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWEFQ 113 (117)
T ss_dssp CCC------------------------------------------------------------------
T ss_pred CCCCcCeECChhhcCcChhhhcccccccccccccccCC-cCceEcHHHHHHHHHcCCcCCCCCCeeeee
Confidence 3568999999999763 2 222245 999999999999999999999999986443
No 16
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=1.1e-12 Score=94.53 Aligned_cols=51 Identities=31% Similarity=0.823 Sum_probs=44.7
Q ss_pred CCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcCCCC
Q 044271 309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPVHA 364 (369)
Q Consensus 309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~~~~ 364 (369)
..+..|+||++.+.+ ..++ |+|.||..||..|++.+.+||+||.++.....
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 63 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGANE 63 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCCCC
T ss_pred CCCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCCCc
Confidence 346899999999887 5677 99999999999999999999999998876543
No 17
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.27 E-value=2.1e-12 Score=92.39 Aligned_cols=50 Identities=34% Similarity=0.873 Sum_probs=43.1
Q ss_pred CCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcC
Q 044271 309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATP 361 (369)
Q Consensus 309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~ 361 (369)
..+..|+||++++.+ .+..++ |+|.||..|+..|++.+.+||+||.++..
T Consensus 3 ~~~~~C~IC~~~~~~--~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPSN--YSMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCCS--CEEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCCeeCCccccC--CcEecC-CCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 346799999999865 346677 99999999999999999999999998754
No 18
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=2.4e-12 Score=92.90 Aligned_cols=50 Identities=28% Similarity=0.693 Sum_probs=42.8
Q ss_pred CCCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcC
Q 044271 308 GPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATP 361 (369)
Q Consensus 308 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~ 361 (369)
...+..|+||++.+.+. ..++ |+|.||..||..|++.+..||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~---~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHP---VSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSSCCBCSSSSSBCSSE---EEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCCccCCcccCCC---EEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 34568999999998653 4567 99999999999999999999999998753
No 19
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=9.2e-12 Score=90.09 Aligned_cols=52 Identities=21% Similarity=0.545 Sum_probs=43.7
Q ss_pred CCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcCCC
Q 044271 309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPVH 363 (369)
Q Consensus 309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~~~ 363 (369)
.....|+||++.+.+ .+..++ |+|.||..||..|++.+..||+||.++....
T Consensus 13 ~~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 13 TPYILCSICKGYLID--ATTITE-CLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQ 64 (72)
T ss_dssp CGGGSCTTTSSCCSS--CEECSS-SCCEECHHHHHHHHHHCSSCTTTCCCCCSSC
T ss_pred CCCCCCCCCChHHHC--cCEECC-CCCHHHHHHHHHHHHcCCcCCCcCcccCccc
Confidence 446899999999876 344446 9999999999999999999999999886543
No 20
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=1.2e-11 Score=89.07 Aligned_cols=51 Identities=22% Similarity=0.582 Sum_probs=43.6
Q ss_pred CCCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcC--CCCCCcCCCCcC
Q 044271 308 GPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLN--DKCPVCRNSATP 361 (369)
Q Consensus 308 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~--~~CP~Cr~~~~~ 361 (369)
.+..++|+||.+.+..++... .|+|.||..||+.||+.+ .+||+||++...
T Consensus 12 ~~~i~~C~IC~~~i~~g~~C~---~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 12 PDAVKICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSSSCBCSSSCCBCSSSEECS---SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred cCCCCcCcchhhHcccCCccC---CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 445689999999999877654 499999999999999887 889999998653
No 21
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=2.1e-11 Score=91.74 Aligned_cols=53 Identities=23% Similarity=0.670 Sum_probs=45.0
Q ss_pred CCcccccccccccccCce-eeeeCCCCCccChHhHHHHHhcC---CCCCCcCCCCcCC
Q 044271 309 PNSSACPICLSEFLSQET-IRCIPECKHCFHAECIDEWLRLN---DKCPVCRNSATPV 362 (369)
Q Consensus 309 ~~~~~C~ICL~~~~~~~~-~~~l~~C~H~fH~~Ci~~wl~~~---~~CP~Cr~~~~~~ 362 (369)
.+...|+||++.|.+.+. .+.++ |||.||..||..|++.+ ..||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred cCCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 446799999999998775 56677 99999999999999876 7899999987543
No 22
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=6e-11 Score=84.19 Aligned_cols=50 Identities=24% Similarity=0.523 Sum_probs=41.9
Q ss_pred CCcccccccccccccCceeeeeCCCCCccChHhHHHHH-hcCCCCCCcCCCCcCC
Q 044271 309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWL-RLNDKCPVCRNSATPV 362 (369)
Q Consensus 309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl-~~~~~CP~Cr~~~~~~ 362 (369)
.+...|+||++.+.+... ++ |||.||..||..|+ +.+..||+||.++...
T Consensus 13 ~~~~~C~IC~~~~~~p~~---~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPKQ---TE-CGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCCEECTTTCCEESSCCC---CS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CcCCCCCCCChHhcCeeE---CC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 346899999999876543 56 99999999999999 4577899999998654
No 23
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=5.7e-11 Score=87.95 Aligned_cols=48 Identities=25% Similarity=0.623 Sum_probs=41.5
Q ss_pred CCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCc
Q 044271 309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSAT 360 (369)
Q Consensus 309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~ 360 (369)
.....|+||++.+.+ .+ .++ |+|.||..||..|++....||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~--p~-~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQN--PV-VTK-CRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCS--EE-ECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcC--ee-Ecc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 345799999999866 33 477 9999999999999999999999999875
No 24
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.09 E-value=1.2e-10 Score=84.69 Aligned_cols=50 Identities=28% Similarity=0.674 Sum_probs=41.0
Q ss_pred CCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcC--CCCCCcCCCCcC
Q 044271 309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLN--DKCPVCRNSATP 361 (369)
Q Consensus 309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~--~~CP~Cr~~~~~ 361 (369)
..+..|+||++.|.+. +. ++.|+|.||..||..|++.+ ..||+||+++..
T Consensus 13 ~~~~~C~IC~~~~~~p--~~-~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 13 PDELLCLICKDIMTDA--VV-IPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp CGGGSCSSSCCCCTTC--EE-CSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCCCCcCCChHHhCC--eE-cCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 4468999999999864 33 65599999999999999865 689999997543
No 25
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.08 E-value=5e-11 Score=96.70 Aligned_cols=53 Identities=26% Similarity=0.742 Sum_probs=45.6
Q ss_pred CCcccccccccccccC----ceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcCC
Q 044271 309 PNSSACPICLSEFLSQ----ETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPV 362 (369)
Q Consensus 309 ~~~~~C~ICL~~~~~~----~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~~ 362 (369)
.++..|+||++.|.+. +.+..++ |||.||..||+.|++.+.+||+||..+...
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 61 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTTT
T ss_pred CCCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCccc
Confidence 3467999999999764 5557787 999999999999999999999999987654
No 26
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=1.2e-10 Score=84.39 Aligned_cols=50 Identities=32% Similarity=0.632 Sum_probs=41.3
Q ss_pred CCcccccccccccccCceeeeeCCCCCccChHhHHHHHh---cCCCCCCcCCCCcCC
Q 044271 309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLR---LNDKCPVCRNSATPV 362 (369)
Q Consensus 309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~---~~~~CP~Cr~~~~~~ 362 (369)
..+..|+||++.+.+ . ..++ |||.||..||..|++ .+..||+||.++...
T Consensus 18 ~~~~~C~IC~~~~~~--~-~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 18 QEEVICPICLDILQK--P-VTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCBCTTTCSBCSS--E-EECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred ccCCEeccCCcccCC--e-EEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 446799999999885 3 3357 999999999999997 466899999998654
No 27
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.04 E-value=1.6e-10 Score=81.67 Aligned_cols=51 Identities=20% Similarity=0.528 Sum_probs=41.3
Q ss_pred ccccccccc-ccccCcee-eeeCCCCCccChHhHHHHHhc-CCCCCCcCCCCcCC
Q 044271 311 SSACPICLS-EFLSQETI-RCIPECKHCFHAECIDEWLRL-NDKCPVCRNSATPV 362 (369)
Q Consensus 311 ~~~C~ICL~-~~~~~~~~-~~l~~C~H~fH~~Ci~~wl~~-~~~CP~Cr~~~~~~ 362 (369)
+..|+||++ .+.+.... ..++ |||.||..||+.|+.+ ...||+||..+...
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred CCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence 578999999 77776544 3456 9999999999999765 56799999998654
No 28
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.03 E-value=1.1e-10 Score=95.52 Aligned_cols=47 Identities=32% Similarity=0.883 Sum_probs=41.0
Q ss_pred cccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcC
Q 044271 311 SSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATP 361 (369)
Q Consensus 311 ~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~ 361 (369)
+..|+||++.|.+. ..+| |||.||..||..|++.+.+||+||.++..
T Consensus 53 ~~~C~iC~~~~~~~---~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSEYFIEA---VTLN-CAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HSBCTTTCSBCSSE---EEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred cCCCcccCcccCCc---eECC-CCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 45799999998753 4578 99999999999999999999999998753
No 29
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.01 E-value=1.2e-10 Score=94.37 Aligned_cols=53 Identities=26% Similarity=0.742 Sum_probs=45.1
Q ss_pred CCcccccccccccccC----ceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcCC
Q 044271 309 PNSSACPICLSEFLSQ----ETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPV 362 (369)
Q Consensus 309 ~~~~~C~ICL~~~~~~----~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~~ 362 (369)
.+...|+||++++++. .....++ |||.||..||++|++.+.+||+||.++...
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 126 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence 4467899999999863 3446676 999999999999999999999999998654
No 30
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.01 E-value=1.1e-10 Score=90.07 Aligned_cols=48 Identities=27% Similarity=0.668 Sum_probs=41.1
Q ss_pred cccccccccccccCceeeeeCCCCCccChHhHHHHHhcC-CCCCCcCCCCcC
Q 044271 311 SSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLN-DKCPVCRNSATP 361 (369)
Q Consensus 311 ~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~-~~CP~Cr~~~~~ 361 (369)
...|+||++.+.+ .+..++ |||.||..||..|++.+ ..||+||.++..
T Consensus 22 ~~~C~IC~~~~~~--p~~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 22 VFRCFICMEKLRD--ARLCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HTBCTTTCSBCSS--EEECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCccCCccccC--ccccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 5799999999875 444466 99999999999999887 699999998754
No 31
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.00 E-value=1.5e-10 Score=89.16 Aligned_cols=48 Identities=27% Similarity=0.645 Sum_probs=41.4
Q ss_pred cccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcC
Q 044271 311 SSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATP 361 (369)
Q Consensus 311 ~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~ 361 (369)
...|+||++.|.+ .+..++ |||.||..||..|++.+.+||+||..+..
T Consensus 22 ~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYFNI--AMIIPQ-CSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBCSS--EEECTT-TCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCcccCChhhCC--cCEECC-CCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 5789999999876 344346 99999999999999999999999998764
No 32
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=3.2e-10 Score=78.05 Aligned_cols=43 Identities=33% Similarity=0.828 Sum_probs=35.9
Q ss_pred CCcccccccccccccCceeeeeCCCCCccChHhHHHHH---hcCCCCCCc
Q 044271 309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWL---RLNDKCPVC 355 (369)
Q Consensus 309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl---~~~~~CP~C 355 (369)
.++..|+||++.+.+. ..++ |+|.||..||..|+ +.+.+||+|
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEP---VIIE-CGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSC---CCCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCcc---EeCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3467999999999875 3367 99999999999995 457889998
No 33
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.99 E-value=4.3e-10 Score=83.70 Aligned_cols=50 Identities=30% Similarity=0.620 Sum_probs=42.3
Q ss_pred CCcccccccccccccCceeeeeCCCCCccChHhHHHHHhc------CCCCCCcCCCCcCC
Q 044271 309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL------NDKCPVCRNSATPV 362 (369)
Q Consensus 309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~------~~~CP~Cr~~~~~~ 362 (369)
..+..|+||++.+.+.. .++ |+|.||..||..|++. ...||+||..+...
T Consensus 17 ~~~~~C~IC~~~~~~p~---~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 17 KEEVTCPICLELLKEPV---SAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp CTTTSCTTTCSCCSSCE---ECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred ccCCCCcCCChhhCcce---eCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 34679999999987643 577 9999999999999987 67899999988654
No 34
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.97 E-value=5e-10 Score=82.13 Aligned_cols=50 Identities=20% Similarity=0.533 Sum_probs=42.3
Q ss_pred CCcccccccccccccCceeeeeCCCCCccChHhHHHHHhc-CCCCCCcCCCCcCC
Q 044271 309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL-NDKCPVCRNSATPV 362 (369)
Q Consensus 309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~-~~~CP~Cr~~~~~~ 362 (369)
.++..|+||++.|.+. + .++ |||.||..||..|++. +.+||+||.++...
T Consensus 6 ~~~~~C~IC~~~~~~P--v-~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 6 PEYFRCPISLELMKDP--V-IVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLHA 56 (78)
T ss_dssp SSSSSCTTTSCCCSSE--E-EET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred cccCCCCCccccccCC--E-EcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence 4568999999998764 3 357 9999999999999987 78899999988654
No 35
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.96 E-value=2.4e-10 Score=84.00 Aligned_cols=50 Identities=28% Similarity=0.586 Sum_probs=41.9
Q ss_pred CCcccccccccccccCceeeeeCCCCCccChHhHHHHHhc-------CCCCCCcCCCCcCC
Q 044271 309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL-------NDKCPVCRNSATPV 362 (369)
Q Consensus 309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~-------~~~CP~Cr~~~~~~ 362 (369)
.++..|+||++.+.+.. .++ |||.||..||..|++. ...||+||..+...
T Consensus 10 ~~~~~C~IC~~~~~~p~---~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 10 QEEVTCPICLELLTEPL---SLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CCCCEETTTTEECSSCC---CCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred ccCCCCcCCCcccCCee---ECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 44689999999987643 367 9999999999999987 67899999988653
No 36
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.96 E-value=4e-10 Score=88.19 Aligned_cols=50 Identities=26% Similarity=0.645 Sum_probs=42.8
Q ss_pred CcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcCC
Q 044271 310 NSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPV 362 (369)
Q Consensus 310 ~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~~ 362 (369)
.+..|+||++.+.+ .+..++ |||.||..||..|++.+..||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 14 PHLMCVLCGGYFID--ATTIIE-CLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GGTBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CcCCCccCChHHhC--cCEeCC-CCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 36799999999875 455447 999999999999999999999999988653
No 37
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=9.4e-10 Score=81.84 Aligned_cols=51 Identities=31% Similarity=0.735 Sum_probs=42.6
Q ss_pred CCcccccccccccccCceeeeeCCCCCccChHhHHHHHhc------CCCCCCcCCCCcCCC
Q 044271 309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL------NDKCPVCRNSATPVH 363 (369)
Q Consensus 309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~------~~~CP~Cr~~~~~~~ 363 (369)
.....|+||++.+.+. ..++ |+|.||..|+..|++. ...||+||..+....
T Consensus 17 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecv_A 17 KEEVTCPICLELLTQP---LSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN 73 (85)
T ss_dssp CCCCCCTTTCSCCSSC---BCCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSS
T ss_pred cCCCCCCCCCcccCCc---eeCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHh
Confidence 3467999999998764 3367 9999999999999987 788999999887543
No 38
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=7.5e-10 Score=77.62 Aligned_cols=43 Identities=35% Similarity=0.712 Sum_probs=36.0
Q ss_pred CCcccccccccccccCceeeeeCCCCCccChHhHHHHHh---cCCCCCCc
Q 044271 309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLR---LNDKCPVC 355 (369)
Q Consensus 309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~---~~~~CP~C 355 (369)
.++..|+||++.+.+. ..++ |||.||..||..|++ .+..||+|
T Consensus 18 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKP---VTID-CGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSC---EECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCCe---EEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 4467999999998863 3357 999999999999998 46689998
No 39
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.90 E-value=9.5e-10 Score=92.80 Aligned_cols=49 Identities=39% Similarity=0.798 Sum_probs=41.6
Q ss_pred CcccccccccccccCceeeeeCCCCCccChHhHHHHHhc-CCCCCCcCCCCcC
Q 044271 310 NSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL-NDKCPVCRNSATP 361 (369)
Q Consensus 310 ~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~-~~~CP~Cr~~~~~ 361 (369)
....|+||++.+.+ .+..++ |||.||..||..|++. +..||+||..+..
T Consensus 53 ~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLKN--TMTTKE-CLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCcccChHhhC--cCEeCC-CCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 35699999999886 455457 9999999999999987 7889999998753
No 40
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.82 E-value=1.9e-09 Score=86.47 Aligned_cols=47 Identities=23% Similarity=0.562 Sum_probs=39.9
Q ss_pred cccccccccccccCceeeeeCCCCCccChHhHHHHHhcCC-CCCCcCCCCcC
Q 044271 311 SSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLND-KCPVCRNSATP 361 (369)
Q Consensus 311 ~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~-~CP~Cr~~~~~ 361 (369)
+..|+||++.|.+. ..++ |||.||..||..|+..+. .||+||.++..
T Consensus 52 ~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVFRP---ITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCSSE---EECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHcCc---EEee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 56899999998853 2357 999999999999998554 89999999866
No 41
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.81 E-value=5.3e-09 Score=79.15 Aligned_cols=49 Identities=29% Similarity=0.698 Sum_probs=40.2
Q ss_pred CCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcC--CCCCCcCCCCc
Q 044271 309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLN--DKCPVCRNSAT 360 (369)
Q Consensus 309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~--~~CP~Cr~~~~ 360 (369)
.++..|+||++.|.+. + .++.|||.|+..||..|+..+ ..||+||.++.
T Consensus 11 ~~~~~C~IC~~~~~~p--~-~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIMTDA--V-VIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEECSSC--E-ECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CcCCCCCCCChhhcCc--e-ECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 4568999999998854 3 355599999999999999753 68999999873
No 42
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.80 E-value=3.5e-09 Score=83.17 Aligned_cols=49 Identities=31% Similarity=0.694 Sum_probs=40.7
Q ss_pred cccccccccccccCceeeeeCCCCCccChHhHHHHHhcCC---CCCCcCCCCcCCC
Q 044271 311 SSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLND---KCPVCRNSATPVH 363 (369)
Q Consensus 311 ~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~---~CP~Cr~~~~~~~ 363 (369)
...|+||++.+.+... ++ |||.||..||..|+..+. .||+||.++....
T Consensus 21 ~~~C~IC~~~~~~p~~---~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 72 (112)
T 1jm7_A 21 ILECPICLELIKEPVS---TK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS 72 (112)
T ss_dssp HTSCSSSCCCCSSCCB---CT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTT
T ss_pred CCCCcccChhhcCeEE---CC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhh
Confidence 4689999999876432 67 999999999999998754 8999999887543
No 43
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.80 E-value=1.9e-09 Score=75.75 Aligned_cols=51 Identities=22% Similarity=0.321 Sum_probs=41.5
Q ss_pred CCCcccccccccccccCceee-eeCCCCCc-cChHhHHHHHhcCCCCCCcCCCCcC
Q 044271 308 GPNSSACPICLSEFLSQETIR-CIPECKHC-FHAECIDEWLRLNDKCPVCRNSATP 361 (369)
Q Consensus 308 ~~~~~~C~ICL~~~~~~~~~~-~l~~C~H~-fH~~Ci~~wl~~~~~CP~Cr~~~~~ 361 (369)
..++.+|.||+++..+. +. .+| |||. |..+|+..|.+.+..||+||+++..
T Consensus 5 ~~~~~~C~IC~~~~~~~--~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 5 LNAIEPCVICQGRPKNG--CIVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQM 57 (64)
T ss_dssp CGGGSCCTTTSSSCSCE--EEEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred CCCcCCCCcCCCCCCCE--EEECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence 45678999999986553 32 238 9999 7899999999999999999998753
No 44
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.77 E-value=3.3e-09 Score=84.27 Aligned_cols=50 Identities=32% Similarity=0.582 Sum_probs=41.8
Q ss_pred CCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCC-CCCCcCCCCcCC
Q 044271 309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLND-KCPVCRNSATPV 362 (369)
Q Consensus 309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~-~CP~Cr~~~~~~ 362 (369)
.+...|+||++.+.+. ..++ |||.||..||..|++... +||+||.++...
T Consensus 16 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 16 ESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp CGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCcCChhhcCe---EECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 4567999999998764 3367 999999999999998765 999999988653
No 45
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.77 E-value=1e-08 Score=74.91 Aligned_cols=55 Identities=18% Similarity=0.380 Sum_probs=41.9
Q ss_pred CCCcccccccccccccCcee-eeeCCCCCccChHhHHHHHh-cCCCCCCcCCCCcCCC
Q 044271 308 GPNSSACPICLSEFLSQETI-RCIPECKHCFHAECIDEWLR-LNDKCPVCRNSATPVH 363 (369)
Q Consensus 308 ~~~~~~C~ICL~~~~~~~~~-~~l~~C~H~fH~~Ci~~wl~-~~~~CP~Cr~~~~~~~ 363 (369)
..++..|+||++.+...+.. .-++ |||.|+..|+..|.+ .+..||+||+++....
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred cccCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 34567999999998654432 2234 999999999999874 4678999999876543
No 46
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.77 E-value=5.9e-09 Score=72.04 Aligned_cols=49 Identities=24% Similarity=0.629 Sum_probs=38.5
Q ss_pred CCCcccccccccccccCceeeeeCCCC--C---ccChHhHHHHHhc--CCCCCCcCCCCc
Q 044271 308 GPNSSACPICLSEFLSQETIRCIPECK--H---CFHAECIDEWLRL--NDKCPVCRNSAT 360 (369)
Q Consensus 308 ~~~~~~C~ICL~~~~~~~~~~~l~~C~--H---~fH~~Ci~~wl~~--~~~CP~Cr~~~~ 360 (369)
..++..|.||+++. ++.+ ++| |. | .||..|++.|+.. +.+||+||+++.
T Consensus 3 ~~~~~~CrIC~~~~--~~~l-~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 3 DEDVPVCWICNEEL--GNER-FRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp TCSCCEETTTTEEC--SCCC-CCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCEeEEeecCC--CCce-ecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 34568999999983 3444 577 65 4 9999999999964 678999999864
No 47
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.72 E-value=4.6e-09 Score=71.73 Aligned_cols=49 Identities=20% Similarity=0.518 Sum_probs=40.1
Q ss_pred CCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcCCCC
Q 044271 309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPVHA 364 (369)
Q Consensus 309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~~~~ 364 (369)
.+...|+||++.|.+. +.++ |+|.|+..|+..| ...||+||+.+.....
T Consensus 4 ~~~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~~ 52 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP---KLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLGAD 52 (56)
T ss_dssp CCCSSCSSSCSSCBCC---SCST-TSCCSBTTTCSSS---SSSCSSCCSSSSCCSS
T ss_pred ccCCCceEeCCccCCe---EEcC-CCCcccHHHHccC---CCCCCcCCcEeecCCc
Confidence 4567899999999864 4577 9999999999884 6789999998865443
No 48
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.72 E-value=5.8e-09 Score=86.38 Aligned_cols=48 Identities=21% Similarity=0.495 Sum_probs=40.7
Q ss_pred cccccccccccccCceeeeeCCCCCccChHhHHHHHhcCC-CCCCcCCCCcCC
Q 044271 311 SSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLND-KCPVCRNSATPV 362 (369)
Q Consensus 311 ~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~-~CP~Cr~~~~~~ 362 (369)
...|+||++.|.+.. . ++ |||.||..||..|++... .||+||.++...
T Consensus 78 ~~~C~IC~~~~~~pv--~-~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVYQPV--T-TE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCSSEE--E-CT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CCEeecCChhhcCCE--E-cC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 468999999987643 3 67 999999999999998754 899999998765
No 49
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.71 E-value=4.3e-09 Score=83.31 Aligned_cols=48 Identities=33% Similarity=0.736 Sum_probs=40.8
Q ss_pred cccccccccccccCceeeeeCCCCCccChHhHHHHHhc-CCCCCCcCCCCcCC
Q 044271 311 SSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL-NDKCPVCRNSATPV 362 (369)
Q Consensus 311 ~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~-~~~CP~Cr~~~~~~ 362 (369)
+..|+||++.+.+. +. ++ |||.||..||..|++. +.+||+||.++...
T Consensus 23 ~~~C~IC~~~~~~p--~~-~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 23 SISCQICEHILADP--VE-TS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPT 71 (116)
T ss_dssp HTBCTTTCSBCSSE--EE-CT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCCCCCcHhcCc--EE-cC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCHh
Confidence 57899999998753 33 67 9999999999999987 78899999987654
No 50
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.69 E-value=2.4e-09 Score=84.71 Aligned_cols=48 Identities=23% Similarity=0.661 Sum_probs=40.4
Q ss_pred CCcccccccccccccCceeeeeCCCCCccChHhHHHHHhc-CCCCCCcCCCCc
Q 044271 309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL-NDKCPVCRNSAT 360 (369)
Q Consensus 309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~-~~~CP~Cr~~~~ 360 (369)
.++..|+||++.+.+. ..++ |||.||..||..|++. +..||+||..+.
T Consensus 13 ~~~~~C~iC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 13 LSECQCGICMEILVEP---VTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHHHBCTTTCSBCSSC---EECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCCCccCCcccCce---eEcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 4467999999998753 3357 9999999999999976 678999999875
No 51
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.67 E-value=1e-08 Score=96.75 Aligned_cols=48 Identities=25% Similarity=0.684 Sum_probs=41.4
Q ss_pred cccccccccccccCceeeeeCCCCCccChHhHHHHHh-cCCCCCCcCCCCcCC
Q 044271 311 SSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLR-LNDKCPVCRNSATPV 362 (369)
Q Consensus 311 ~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~-~~~~CP~Cr~~~~~~ 362 (369)
...|+||++.+.+ ...+| |||.||..|+..|+. .+.+||+||.++...
T Consensus 332 ~~~C~ICle~~~~---pv~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBCC---EEEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCCC---eEEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 4799999999855 45678 999999999999998 788999999987654
No 52
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.66 E-value=1.1e-08 Score=71.66 Aligned_cols=51 Identities=16% Similarity=0.322 Sum_probs=40.8
Q ss_pred CCcccccccccccccCceeeeeCCCCCc-cChHhHHHHHhcCCCCCCcCCCCcC
Q 044271 309 PNSSACPICLSEFLSQETIRCIPECKHC-FHAECIDEWLRLNDKCPVCRNSATP 361 (369)
Q Consensus 309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~-fH~~Ci~~wl~~~~~CP~Cr~~~~~ 361 (369)
..+..|.||++...+.. +..+| |||. |...|+..|.+.+..||+||+++..
T Consensus 5 ~~~~~C~IC~~~~~~~~-~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGN-IIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQL 56 (63)
T ss_dssp GGGSBCTTTSSSBSCEE-EEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred CcCCCCcccCCcCCCeE-EEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence 45679999999855432 12237 9998 9999999999888999999998753
No 53
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.63 E-value=7.1e-09 Score=94.94 Aligned_cols=53 Identities=25% Similarity=0.636 Sum_probs=41.4
Q ss_pred CCcccccccccccccCcee----eeeCCCCCccChHhHHHHHhcC-----------CCCCCcCCCCcC
Q 044271 309 PNSSACPICLSEFLSQETI----RCIPECKHCFHAECIDEWLRLN-----------DKCPVCRNSATP 361 (369)
Q Consensus 309 ~~~~~C~ICL~~~~~~~~~----~~l~~C~H~fH~~Ci~~wl~~~-----------~~CP~Cr~~~~~ 361 (369)
....+|+||++.+.++..+ ...++|+|.||..|+.+||+.. ..||+||+++..
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 4568999999999874433 2233599999999999999753 469999998754
No 54
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.54 E-value=1.3e-08 Score=83.33 Aligned_cols=48 Identities=17% Similarity=0.453 Sum_probs=40.2
Q ss_pred CCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCC-CCCCcCCCCc
Q 044271 309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLND-KCPVCRNSAT 360 (369)
Q Consensus 309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~-~CP~Cr~~~~ 360 (369)
.+...|+||++.+.+. + .++ |||.|+..||..|++... .||+||.++.
T Consensus 29 ~~~~~C~IC~~~~~~p--v-~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 29 EAKYLCSACRNVLRRP--F-QAQ-CGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp CGGGBCTTTCSBCSSE--E-ECT-TSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred CcCcCCCCCChhhcCc--E-ECC-CCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 4568999999998775 3 366 999999999999998664 8999999764
No 55
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.51 E-value=2.8e-08 Score=71.94 Aligned_cols=43 Identities=33% Similarity=0.784 Sum_probs=36.7
Q ss_pred cccccccccccccCceeeeeCCCCCc-cChHhHHHHHhcCCCCCCcCCCCcC
Q 044271 311 SSACPICLSEFLSQETIRCIPECKHC-FHAECIDEWLRLNDKCPVCRNSATP 361 (369)
Q Consensus 311 ~~~C~ICL~~~~~~~~~~~l~~C~H~-fH~~Ci~~wl~~~~~CP~Cr~~~~~ 361 (369)
+..|+||++.+.+ ...+| |||. |+..|+..| ..||+||..+..
T Consensus 24 ~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSBCC---EEEET-TCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCCC---EEEcC-CCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 5689999998755 44578 9999 999999998 889999998754
No 56
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.50 E-value=7.5e-08 Score=71.60 Aligned_cols=50 Identities=16% Similarity=0.128 Sum_probs=42.8
Q ss_pred CCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcCC
Q 044271 309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPV 362 (369)
Q Consensus 309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~~ 362 (369)
.....|+||++-|++.- +++ |||.|.+.||..|+..+.+||+||.++...
T Consensus 12 p~~~~CpI~~~~m~dPV---~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDPV---RLP-SGTVMDRSIILRHLLNSPTDPFNRQMLTES 61 (85)
T ss_dssp CTTTBCTTTCSBCSSEE---ECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred chheECcccCchhcCCe---ECC-CCCEECHHHHHHHHhcCCCCCCCcCCCChH
Confidence 45789999999988743 367 999999999999999999999999987643
No 57
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.49 E-value=3.3e-08 Score=78.27 Aligned_cols=46 Identities=24% Similarity=0.569 Sum_probs=38.5
Q ss_pred cccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcC
Q 044271 311 SSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATP 361 (369)
Q Consensus 311 ~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~ 361 (369)
...|+||++.|.+. +...+ |||.|+..||..|+. ..||+||..+..
T Consensus 22 ~~~C~IC~~~~~~p--v~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 22 LLRCSRCTNILREP--VCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAWI 67 (117)
T ss_dssp TTSCSSSCSCCSSC--BCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCSC
T ss_pred CCCCCCCChHhhCc--cEeCC-CCCHHHHHHHHHHhc--CCCcCCCCcCcc
Confidence 57999999998754 33336 999999999999988 889999998754
No 58
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.44 E-value=1.5e-07 Score=72.19 Aligned_cols=50 Identities=18% Similarity=0.186 Sum_probs=43.1
Q ss_pred CCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcCC
Q 044271 309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPV 362 (369)
Q Consensus 309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~~ 362 (369)
.....|+||++-|++.- . ++ |||.|.+.||..|+..+.+||+||.++...
T Consensus 27 p~~~~CpI~~~~m~dPV--~-~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 76 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDPV--R-LP-SGTIMDRSIILRHLLNSPTDPFNRQTLTES 76 (100)
T ss_dssp STTTBCTTTCSBCSSEE--E-ET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCTT
T ss_pred cHhhCCcCccCcccCCe--E-CC-CCCEEchHHHHHHHHcCCCCCCCCCCCChh
Confidence 45789999999987743 3 67 999999999999999999999999988654
No 59
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.43 E-value=1.8e-07 Score=71.47 Aligned_cols=50 Identities=16% Similarity=0.132 Sum_probs=42.8
Q ss_pred CCcccccccccccccCceeeeeCCCC-CccChHhHHHHHhcCCCCCCcCCCCcCC
Q 044271 309 PNSSACPICLSEFLSQETIRCIPECK-HCFHAECIDEWLRLNDKCPVCRNSATPV 362 (369)
Q Consensus 309 ~~~~~C~ICL~~~~~~~~~~~l~~C~-H~fH~~Ci~~wl~~~~~CP~Cr~~~~~~ 362 (369)
..+..|+||++-|++. |. ++ || |.|.+.||..|+..+.+||+||.++...
T Consensus 20 p~~~~CpI~~~~m~dP--V~-~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~ 70 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDP--VV-LP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTMD 70 (98)
T ss_dssp CTTTBCTTTCSBCSSE--EE-CT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred cHhcCCcCccccccCC--eE-CC-CCCeEECHHHHHHHHHhCCCCCCCCCCCChh
Confidence 3468999999998774 33 66 99 9999999999999999999999988654
No 60
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.35 E-value=1.6e-07 Score=71.25 Aligned_cols=48 Identities=27% Similarity=0.729 Sum_probs=40.9
Q ss_pred CcccccccccccccCceeeeeCCCCCccChHhHHHHHhc--------CCCCCC--cCCC
Q 044271 310 NSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL--------NDKCPV--CRNS 358 (369)
Q Consensus 310 ~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~--------~~~CP~--Cr~~ 358 (369)
....|+||++++...+.++..+ |+|.|+.+|+..+++. ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 3568999999998888777667 9999999999999963 247999 9987
No 61
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.32 E-value=1.9e-07 Score=78.96 Aligned_cols=50 Identities=32% Similarity=0.618 Sum_probs=41.6
Q ss_pred CCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcC-CCCCCcCCCCcCC
Q 044271 309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLN-DKCPVCRNSATPV 362 (369)
Q Consensus 309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~-~~CP~Cr~~~~~~ 362 (369)
.+...|+||++.+.+. + .++ |||.|+..||..|++.. .+||+||.++...
T Consensus 16 ~~~~~C~IC~~~~~~p--v-~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 16 ESKYECPICLMALREA--V-QTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp CGGGBCTTTCSBCSSE--E-ECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCChhhcCc--E-ECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 4568999999998764 3 367 99999999999999764 4999999988653
No 62
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.31 E-value=4.7e-07 Score=64.18 Aligned_cols=45 Identities=27% Similarity=0.734 Sum_probs=37.0
Q ss_pred CCcccccccccccccCceeeeeCCCCCc-cChHhHHHHHhcCCCCCCcCCCCcC
Q 044271 309 PNSSACPICLSEFLSQETIRCIPECKHC-FHAECIDEWLRLNDKCPVCRNSATP 361 (369)
Q Consensus 309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~-fH~~Ci~~wl~~~~~CP~Cr~~~~~ 361 (369)
.+...|.||++...+ +..+| |+|. |...|+.. ...||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVN---WVLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCCC---CEETT-TTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCCC---EEEEC-CCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 446799999998654 66688 9999 99999984 5789999998754
No 63
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.30 E-value=2e-07 Score=67.52 Aligned_cols=44 Identities=32% Similarity=0.756 Sum_probs=35.8
Q ss_pred cccccccccccccCceeeeeCCCCCc-cChHhHHHHHhcCCCCCCcCCCCcCC
Q 044271 311 SSACPICLSEFLSQETIRCIPECKHC-FHAECIDEWLRLNDKCPVCRNSATPV 362 (369)
Q Consensus 311 ~~~C~ICL~~~~~~~~~~~l~~C~H~-fH~~Ci~~wl~~~~~CP~Cr~~~~~~ 362 (369)
+..|+||++.+.+ ...+| |||. |+..|+.. ...||+||.++...
T Consensus 25 ~~~C~IC~~~~~~---~~~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 25 EKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEA----VDKCPMCYTVITFK 69 (75)
T ss_dssp HHSCSSSCSSCCC---BCCSS-SCCCCBCHHHHHH----CSBCTTTCCBCCCC
T ss_pred CCCCCcCCCCCCC---EEEec-CCCHHHHHHHhhC----CCCCccCCceecCc
Confidence 4689999998755 34577 9999 99999964 47899999988653
No 64
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.14 E-value=1.2e-06 Score=66.28 Aligned_cols=47 Identities=21% Similarity=0.566 Sum_probs=38.2
Q ss_pred CCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcC------CCCCC--cCCC
Q 044271 309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLN------DKCPV--CRNS 358 (369)
Q Consensus 309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~------~~CP~--Cr~~ 358 (369)
.....|+||++-|++ .|. ++.|||.|.+.||..|+..+ .+||+ |+..
T Consensus 5 ~~~~~CPI~~~~~~d--PV~-~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMKK--PVK-NKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCSS--EEE-ESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhcC--CEE-cCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 446899999999875 555 43399999999999999764 58999 9865
No 65
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.12 E-value=7.2e-07 Score=65.23 Aligned_cols=43 Identities=28% Similarity=0.719 Sum_probs=35.7
Q ss_pred cccccccccccccCceeeeeCCCCCc-cChHhHHHHHhcCCCCCCcCCCCcC
Q 044271 311 SSACPICLSEFLSQETIRCIPECKHC-FHAECIDEWLRLNDKCPVCRNSATP 361 (369)
Q Consensus 311 ~~~C~ICL~~~~~~~~~~~l~~C~H~-fH~~Ci~~wl~~~~~CP~Cr~~~~~ 361 (369)
+..|.||++...+ ...+| |||. |...|+..| ..||+||..+..
T Consensus 18 ~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEEIN---STFCP-CGHTVCCESCAAQL----QSCPVCRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSBCC---EEEET-TCBCCBCHHHHTTC----SBCTTTCCBCCE
T ss_pred CCEeEEeCcccCc---EEEEC-CCCHHHHHHHHHhc----CcCCCCCchhhC
Confidence 4689999998654 55688 9999 999999987 499999998653
No 66
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.01 E-value=2e-06 Score=59.40 Aligned_cols=49 Identities=8% Similarity=0.160 Sum_probs=40.9
Q ss_pred cccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcCC
Q 044271 311 SSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPV 362 (369)
Q Consensus 311 ~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~~ 362 (369)
...|+|+++-+++ .|...+ +||.|-+.||..|++++.+||+.+.++...
T Consensus 3 ~~~CpIs~~~m~d--PV~~~~-sG~~yer~~I~~~l~~~~~cP~t~~~L~~~ 51 (61)
T 2bay_A 3 HMLCAISGKVPRR--PVLSPK-SRTIFEKSLLEQYVKDTGNDPITNEPLSIE 51 (61)
T ss_dssp -CCCTTTCSCCSS--EEEETT-TTEEEEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred eEEecCCCCCCCC--CEEeCC-CCcEEcHHHHHHHHHhCCCCcCCcCCCChh
Confidence 4689999999885 454325 999999999999999988999999987654
No 67
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.99 E-value=3.7e-06 Score=76.56 Aligned_cols=50 Identities=20% Similarity=0.208 Sum_probs=41.3
Q ss_pred CCCcccccccccccccCceeeeeCCCCCccChHhHHHHHhc-CCCCCCcCCCCcC
Q 044271 308 GPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL-NDKCPVCRNSATP 361 (369)
Q Consensus 308 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~-~~~CP~Cr~~~~~ 361 (369)
......|+||++-|.+. |. ++ |||.|.+.||..|+.. +.+||+||.++..
T Consensus 205 ~~~~~~c~i~~~~~~dP--v~-~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 205 IPDYLCGKISFELMREP--CI-TP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CCSTTBCTTTCSBCSSE--EE-CS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CCcccCCcCcCCHhcCC--eE-CC-CCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 44678999999998764 33 67 9999999999999986 4459999998854
No 68
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.82 E-value=8.1e-06 Score=68.94 Aligned_cols=51 Identities=20% Similarity=0.161 Sum_probs=42.1
Q ss_pred CCCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcC-CCCCCcCCCCcCC
Q 044271 308 GPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLN-DKCPVCRNSATPV 362 (369)
Q Consensus 308 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~-~~CP~Cr~~~~~~ 362 (369)
......|+||++-|.+ +|. ++ |||.|.+.||..|+..+ .+||+||.++...
T Consensus 103 ip~~f~CPI~~elm~D--PV~-~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~ 154 (179)
T 2f42_A 103 IPDYLCGKISFELMRE--PCI-TP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQD 154 (179)
T ss_dssp CCGGGBCTTTCSBCSS--EEE-CT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CcHhhcccCccccCCC--CeE-CC-CCCEECHHHHHHHHHhCCCCCCCCcCCCChh
Confidence 4567899999999886 444 47 99999999999999764 5799999987643
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.78 E-value=5.9e-06 Score=77.37 Aligned_cols=43 Identities=33% Similarity=0.828 Sum_probs=36.7
Q ss_pred cccccccccccccCceeeeeCCCCCc-cChHhHHHHHhcCCCCCCcCCCCcC
Q 044271 311 SSACPICLSEFLSQETIRCIPECKHC-FHAECIDEWLRLNDKCPVCRNSATP 361 (369)
Q Consensus 311 ~~~C~ICL~~~~~~~~~~~l~~C~H~-fH~~Ci~~wl~~~~~CP~Cr~~~~~ 361 (369)
+..|+||++.+.+ ...+| |||. |+..|+..| ..||+||..+..
T Consensus 295 ~~~C~IC~~~~~~---~v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 295 ERTCKVCMDKEVS---VVFIP-CGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp TCBCTTTSSSBCC---EEEET-TCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred CCCCCccCCcCCc---eEEcC-CCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 5799999998764 44578 9999 999999998 789999998754
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.76 E-value=1e-05 Score=71.89 Aligned_cols=50 Identities=22% Similarity=0.537 Sum_probs=40.6
Q ss_pred CCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcC--CCCCC--cCCCCcC
Q 044271 309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLN--DKCPV--CRNSATP 361 (369)
Q Consensus 309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~--~~CP~--Cr~~~~~ 361 (369)
.....|+||++-|++ .|+... |||.|.+.||..|++.+ ..||+ ||..+..
T Consensus 179 ~~el~CPIcl~~f~D--PVts~~-CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 179 KIELTCPITCKPYEA--PLISRK-CNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp BCCSBCTTTSSBCSS--EEEESS-SCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred ceeeECcCccCcccC--CeeeCC-CCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 345799999999855 666556 99999999999999764 56999 9997654
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.66 E-value=3.9e-05 Score=57.27 Aligned_cols=45 Identities=29% Similarity=0.583 Sum_probs=36.1
Q ss_pred ccccccccccCceeeeeCCCCCccChHhHHHHHh-cCCCCCCcCCCCcC
Q 044271 314 CPICLSEFLSQETIRCIPECKHCFHAECIDEWLR-LNDKCPVCRNSATP 361 (369)
Q Consensus 314 C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~-~~~~CP~Cr~~~~~ 361 (369)
|.+|--.+ ....|.+| |+|+|..+|+..|.+ +.++||+|+.++.-
T Consensus 4 C~~C~~Pi--~iygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 4 CDKCGLPI--KVYGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp CTTTCSBC--SEEEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred cCccCCCe--EEEeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 56665553 34678999 999999999999985 57889999998753
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.54 E-value=7.6e-05 Score=66.18 Aligned_cols=50 Identities=22% Similarity=0.593 Sum_probs=40.6
Q ss_pred CcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCC--CCCCcCCCCcCC
Q 044271 310 NSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLND--KCPVCRNSATPV 362 (369)
Q Consensus 310 ~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~--~CP~Cr~~~~~~ 362 (369)
....|+||.+-...|... +.|+|.||..|+..|++.+. .||.|+.+-...
T Consensus 179 ~i~~C~iC~~iv~~g~~C---~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSC---ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp TCCBCTTTCSBCSSCEEC---SSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCCcCcchhhHHhCCccc---CccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 468999999998876543 34999999999999997754 899999875443
No 73
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=95.24 E-value=0.02 Score=39.72 Aligned_cols=51 Identities=22% Similarity=0.495 Sum_probs=37.2
Q ss_pred CCcccccccccccccCceeeeeCCCCCccChHhHHHHHhc----CCCCCCcCCCCcCCC
Q 044271 309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL----NDKCPVCRNSATPVH 363 (369)
Q Consensus 309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~----~~~CP~Cr~~~~~~~ 363 (369)
..+..|.||.+ .++.+. --.|...||..|+++.|.. ...||.|+....++.
T Consensus 10 ~~~~~C~vC~~---~~~ll~-Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~p~P 64 (66)
T 2lri_C 10 APGARCGVCGD---GTDVLR-CTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTPAP 64 (66)
T ss_dssp CTTCCCTTTSC---CTTCEE-CSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCCCCC
T ss_pred CCCCCcCCCCC---CCeEEE-CCCCCCceecccCCCccCcCCCCCEECccccCCCccCC
Confidence 34578999975 344443 3458999999999998855 457999988766553
No 74
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=94.27 E-value=0.026 Score=41.35 Aligned_cols=48 Identities=21% Similarity=0.595 Sum_probs=38.6
Q ss_pred CCcccccccccccccCceeeeeCCC-CCccChHhHHHHHhcCCCCCCcCCCCcCC
Q 044271 309 PNSSACPICLSEFLSQETIRCIPEC-KHCFHAECIDEWLRLNDKCPVCRNSATPV 362 (369)
Q Consensus 309 ~~~~~C~ICL~~~~~~~~~~~l~~C-~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~~ 362 (369)
-+-..|-.||-+.+ .-|+ | .|.+...|+...|.....||+|+.+|...
T Consensus 26 ~G~~nCKsCWf~~k--~LV~----C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 26 LGPQFCKSCWFENK--GLVE----CNNHYLCLNCLTLLLSVSNRCPICKMPLPTK 74 (99)
T ss_dssp SCCCCCCSSCSCCS--SEEE----CSSCEEEHHHHHHTCSSSSEETTTTEECCCC
T ss_pred cCcccChhhccccC--Ceee----ecchhhHHHHHHHHHhhccCCcccCCcCCcc
Confidence 34579999998744 3333 6 79999999999999999999999987544
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=88.36 E-value=0.21 Score=37.43 Aligned_cols=35 Identities=17% Similarity=0.560 Sum_probs=27.5
Q ss_pred cccccccccccccCceeeeeCCCCCccChHhHHH-HH
Q 044271 311 SSACPICLSEFLSQETIRCIPECKHCFHAECIDE-WL 346 (369)
Q Consensus 311 ~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~-wl 346 (369)
+..|.||++++.......-+. |+|.|...|+.. |-
T Consensus 3 e~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKATHP 38 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHHSC
T ss_pred CCCCcCCCCCCCCCceEECCc-CChHHhHHHCHHHhc
Confidence 468999998865555545466 999999999998 53
No 76
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=85.29 E-value=1.1 Score=32.10 Aligned_cols=48 Identities=21% Similarity=0.500 Sum_probs=31.3
Q ss_pred CCCcccccccccccccCceeeeeCCCCCccChHhHHHH------------Hhc----CCCCCCcCC
Q 044271 308 GPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEW------------LRL----NDKCPVCRN 357 (369)
Q Consensus 308 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~w------------l~~----~~~CP~Cr~ 357 (369)
...++.|.||-. +..++... ..-|+-+||..|+++. ++. ..+||-|..
T Consensus 12 ~~~D~~C~VC~~-~t~~~l~p-CRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Cen 75 (89)
T 1wil_A 12 VVNDEMCDVCEV-WTAESLFP-CRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDN 75 (89)
T ss_dssp CCCSCCCTTTCC-CCSSCCSS-CSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCC
T ss_pred CCCCcccCcccc-ccccceec-cccccccccHhhcccccccccHHHHHHHHccCCCCCccccccch
Confidence 346789999852 33333322 2237999999999996 211 356999965
No 77
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=85.12 E-value=0.58 Score=34.14 Aligned_cols=49 Identities=20% Similarity=0.584 Sum_probs=35.3
Q ss_pred CCCcccccccccccccCceeeeeCCCCCccChHhHHHHHhc----CCCCCCcCCCCc
Q 044271 308 GPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL----NDKCPVCRNSAT 360 (369)
Q Consensus 308 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~----~~~CP~Cr~~~~ 360 (369)
...++.|.+|.+. ++.+. .-.|.-.||..|+++=|.. ...||.|+....
T Consensus 22 d~n~~~C~vC~~~---g~LL~-CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~~ 74 (88)
T 1fp0_A 22 DDSATICRVCQKP---GDLVM-CNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPD 74 (88)
T ss_dssp SSSSSCCSSSCSS---SCCEE-CTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCCS
T ss_pred CCCCCcCcCcCCC---CCEEE-CCCCCCceecccCCCCCCCCcCCCcCCccccCCCc
Confidence 4557899999964 44333 3358899999999886643 456999986543
No 78
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=84.36 E-value=0.27 Score=37.67 Aligned_cols=48 Identities=25% Similarity=0.641 Sum_probs=32.7
Q ss_pred CCCcccccccccccccCceeeeeCCCCCccChHhHHHHHhc----CCCCCCcC
Q 044271 308 GPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL----NDKCPVCR 356 (369)
Q Consensus 308 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~----~~~CP~Cr 356 (369)
...++.|.||.+.=+..+.+.- ..|...||..|++..+.. ...||-|+
T Consensus 4 ~~~~~~C~~C~~~g~~~~ll~C-~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLLDQFFC-TTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCCSCBTTTCCCCCTTTSEEC-SSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCCcCCCCCCCCcCCeEC-CCCCCCcChHHhCCccccccccCccCCcCC
Confidence 3457899999887433333443 349999999999987742 34466654
No 79
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=84.12 E-value=0.45 Score=32.14 Aligned_cols=47 Identities=26% Similarity=0.646 Sum_probs=33.7
Q ss_pred CCCcccccccccccccCceeeeeCCCCCccChHhHHHHHh----cCCCCCCcCCC
Q 044271 308 GPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLR----LNDKCPVCRNS 358 (369)
Q Consensus 308 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~----~~~~CP~Cr~~ 358 (369)
...+..|.||.+. ++.+.-- .|...||..|+++=+. ....||.|+..
T Consensus 8 ~~~~~~C~vC~~~---g~ll~CD-~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 8 TDHQDYCEVCQQG---GEIILCD-TCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SCCCSSCTTTSCC---SSEEECS-SSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCCccCCCC---CcEEECC-CCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 4557899999873 4444433 4899999999998653 34569999753
No 80
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=84.04 E-value=0.38 Score=32.50 Aligned_cols=49 Identities=22% Similarity=0.504 Sum_probs=34.1
Q ss_pred CCCcccccccccccccCceeeeeCCCCCccChHhHHHHHhc----CCCCCCcCCCCc
Q 044271 308 GPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL----NDKCPVCRNSAT 360 (369)
Q Consensus 308 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~----~~~CP~Cr~~~~ 360 (369)
...+..|.||.+. ++.+. --.|...||..|+.+=|.. ...||.|+....
T Consensus 6 d~~~~~C~vC~~~---g~ll~-Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 58 (61)
T 1mm2_A 6 DHHMEFCRVCKDG---GELLC-CDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPAL 58 (61)
T ss_dssp CSSCSSCTTTCCC---SSCBC-CSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCC
T ss_pred cCCCCcCCCCCCC---CCEEE-cCCCCHHHcccccCCCcCcCCCCccCChhhcCchh
Confidence 3456789999852 44333 3348999999999975543 456999987654
No 81
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=83.85 E-value=0.24 Score=33.75 Aligned_cols=50 Identities=28% Similarity=0.612 Sum_probs=35.7
Q ss_pred CCcccccccccccccCceeeeeCCCCCccChHhHHHHHh-----cCCCCCCcCCC
Q 044271 309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLR-----LNDKCPVCRNS 358 (369)
Q Consensus 309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~-----~~~~CP~Cr~~ 358 (369)
.++..|+||...+.++...+..-.|..=||..|+..-.. ....||.|+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 456789999999875544443445899999999875332 35679999754
No 82
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=82.51 E-value=1 Score=28.09 Aligned_cols=13 Identities=0% Similarity=0.079 Sum_probs=4.9
Q ss_pred HHHHHHHhhhhce
Q 044271 244 PALICASAIGICA 256 (369)
Q Consensus 244 ~~l~~~~~~~~~~ 256 (369)
+++++++.+.+++
T Consensus 20 v~~v~ii~~~~~~ 32 (44)
T 2l2t_A 20 LFILVIVGLTFAV 32 (44)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 83
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=82.45 E-value=0.6 Score=30.11 Aligned_cols=44 Identities=27% Similarity=0.606 Sum_probs=30.2
Q ss_pred cccccccccccCceeeeeCCCCCccChHhHHHHHhc----CCCCCCcCC
Q 044271 313 ACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL----NDKCPVCRN 357 (369)
Q Consensus 313 ~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~----~~~CP~Cr~ 357 (369)
.|.||.+.-..++.+. --.|...||..|+++=+.. ...||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~-Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLIL-CDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEE-CTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEE-CCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 5888887644444444 3358999999999864433 445999975
No 84
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=78.27 E-value=0.82 Score=38.32 Aligned_cols=49 Identities=18% Similarity=0.490 Sum_probs=35.6
Q ss_pred cccccccccccccCce---eeeeCCCCCccChHhHHHH------Hh-----cCCCCCCcCCCC
Q 044271 311 SSACPICLSEFLSQET---IRCIPECKHCFHAECIDEW------LR-----LNDKCPVCRNSA 359 (369)
Q Consensus 311 ~~~C~ICL~~~~~~~~---~~~l~~C~H~fH~~Ci~~w------l~-----~~~~CP~Cr~~~ 359 (369)
+..|+||...|.+++. .+..-.|..=||..|+..= +. ..-.||.|+..-
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 4579999999998872 4444459999999998531 11 167899998753
No 85
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=77.81 E-value=0.69 Score=39.60 Aligned_cols=48 Identities=27% Similarity=0.666 Sum_probs=34.9
Q ss_pred CCCcccccccccccccCceeeeeCCCCCccChHhHHHHHhc----CCCCCCcCCCC
Q 044271 308 GPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL----NDKCPVCRNSA 359 (369)
Q Consensus 308 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~----~~~CP~Cr~~~ 359 (369)
...++.|.+|.+. |+ +...-.|...||..|+++-+.. ...||.|+..-
T Consensus 4 d~~~~~C~~C~~~---g~-ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 4 DPNEDWCAVCQNG---GD-LLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp CSSCSSBTTTCCC---EE-EEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCC---Cc-eEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 3456889999743 33 4444458999999999887753 46799998754
No 86
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=76.83 E-value=0.76 Score=32.32 Aligned_cols=51 Identities=22% Similarity=0.430 Sum_probs=35.2
Q ss_pred CCcccccccccccccCceeeeeCCCCCccChHhHHHHHh----cCCCCCCcCCCCc
Q 044271 309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLR----LNDKCPVCRNSAT 360 (369)
Q Consensus 309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~----~~~~CP~Cr~~~~ 360 (369)
.....|.||.........|. .-.|..-||..|+..-+. ....||.|+..+.
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~-CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIG-CDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEE-CSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCcCCCCCCCCCCCCCEEE-cCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 34567999988764333444 334899999999987553 2456999976543
No 87
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=76.46 E-value=3 Score=33.30 Aligned_cols=47 Identities=21% Similarity=0.391 Sum_probs=34.2
Q ss_pred CCCcccccccccccccCceeeeeCCCCCccChHhHHHHHh-----------cCCCCCCcCCC
Q 044271 308 GPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLR-----------LNDKCPVCRNS 358 (369)
Q Consensus 308 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~-----------~~~~CP~Cr~~ 358 (369)
...++.|.||-+. |+-+- .-.|-..||..||++=+. ....||+|+..
T Consensus 60 Dg~~d~C~vC~~G---G~Llc-CD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 60 DGMDEQCRWCAEG---GNLIC-CDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp TSCBCSCSSSCCC---SSEEE-CSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCCeecccCCC---CcEEe-CCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 4557899999873 44333 334899999999997652 35679999854
No 88
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=76.37 E-value=3.2 Score=25.83 Aligned_cols=17 Identities=12% Similarity=0.114 Sum_probs=6.5
Q ss_pred HHHHHhhhhceeccccc
Q 044271 246 LICASAIGICACCTDRS 262 (369)
Q Consensus 246 l~~~~~~~~~~~~~~R~ 262 (369)
+++++++.+.++.+||+
T Consensus 23 l~vi~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 23 LVVVLGVVFGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhheehhh
Confidence 33333333333333333
No 89
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=75.90 E-value=0.26 Score=36.09 Aligned_cols=50 Identities=20% Similarity=0.458 Sum_probs=35.2
Q ss_pred Cccccccccccccc-CceeeeeCCCCCccChHhHHHHHh--------cCCCCCCcCCCC
Q 044271 310 NSSACPICLSEFLS-QETIRCIPECKHCFHAECIDEWLR--------LNDKCPVCRNSA 359 (369)
Q Consensus 310 ~~~~C~ICL~~~~~-~~~~~~l~~C~H~fH~~Ci~~wl~--------~~~~CP~Cr~~~ 359 (369)
.+..|.||...-.. ++.+...-.|...||..|+++=|. ....|+.|+...
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~ 73 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQM 73 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHH
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchh
Confidence 35789999986442 234444455899999999997653 356799996543
No 90
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.77 E-value=0.33 Score=32.17 Aligned_cols=46 Identities=22% Similarity=0.639 Sum_probs=32.0
Q ss_pred CCCcccccccccccccCceeeeeCCCCCccChHhHHHHHhc----CCCCCCcCC
Q 044271 308 GPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL----NDKCPVCRN 357 (369)
Q Consensus 308 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~----~~~CP~Cr~ 357 (369)
...+..|.||.+. ++.+. --.|...||..|+++=|.. ...||.|+.
T Consensus 6 ~~~~~~C~vC~~~---g~ll~-Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKS---GQLLM-CDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCS---SCCEE-CSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCC---CeEEE-cCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 4557889999874 44444 3358999999999975533 345888753
No 91
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=73.74 E-value=0.94 Score=34.63 Aligned_cols=46 Identities=26% Similarity=0.542 Sum_probs=32.1
Q ss_pred ccccccccccccCceeeeeCCCCCccChHhHHHHHhc----CCCCCCcCC
Q 044271 312 SACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL----NDKCPVCRN 357 (369)
Q Consensus 312 ~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~----~~~CP~Cr~ 357 (369)
..|.||.+.-.+.+.+..--.|...||..|+++-|.. ...||.|+.
T Consensus 62 ~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 62 KTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 3789998753333344444458999999999876644 456999975
No 92
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=73.47 E-value=4.5 Score=30.71 Aligned_cols=46 Identities=22% Similarity=0.524 Sum_probs=30.1
Q ss_pred ccccccccccc-----ccCceeeeeCCCCCccChHhHHH------HH-hcCCCCCCcC
Q 044271 311 SSACPICLSEF-----LSQETIRCIPECKHCFHAECIDE------WL-RLNDKCPVCR 356 (369)
Q Consensus 311 ~~~C~ICL~~~-----~~~~~~~~l~~C~H~fH~~Ci~~------wl-~~~~~CP~Cr 356 (369)
...|.+|+..- ..++.+..--.|+..||..|++. .+ +....||-|+
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 56899999863 22334444445999999999963 12 3355677665
No 93
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=73.12 E-value=0.98 Score=32.95 Aligned_cols=53 Identities=21% Similarity=0.374 Sum_probs=35.9
Q ss_pred CCccccccccccc-ccCceeeeeCCCCCccChHhHHHHH--hcCCCCCCcCCCCcC
Q 044271 309 PNSSACPICLSEF-LSQETIRCIPECKHCFHAECIDEWL--RLNDKCPVCRNSATP 361 (369)
Q Consensus 309 ~~~~~C~ICL~~~-~~~~~~~~l~~C~H~fH~~Ci~~wl--~~~~~CP~Cr~~~~~ 361 (369)
..+..|.||.+.- .+.+.+...-.|.-.||..|+..-+ .....||.|+.....
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~ 78 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRAR 78 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTS
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccch
Confidence 4568999999753 2334444455689999999998643 235569999765433
No 94
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=72.83 E-value=4.2 Score=31.82 Aligned_cols=47 Identities=21% Similarity=0.480 Sum_probs=33.1
Q ss_pred CCCcccccccccccccCceeeeeCCCCCccChHhHHHHH-----------hcCCCCCCcCCC
Q 044271 308 GPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWL-----------RLNDKCPVCRNS 358 (369)
Q Consensus 308 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl-----------~~~~~CP~Cr~~ 358 (369)
...++.|.||-+- |+ +..--.|-..||..||++-+ .....|++|+..
T Consensus 54 Dg~~~~C~vC~dG---G~-LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 54 DGMDEQCRWCAEG---GN-LICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp TSCBSSCTTTCCC---SE-EEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCCcCeecCCC---Ce-eEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 4557889999863 33 33333589999999999752 124679999764
No 95
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=72.40 E-value=0.61 Score=32.02 Aligned_cols=46 Identities=28% Similarity=0.618 Sum_probs=32.7
Q ss_pred CCCcccccccccccccCceeeeeCCCCCccChHhHHHHHhc----CCCCCCcCC
Q 044271 308 GPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL----NDKCPVCRN 357 (369)
Q Consensus 308 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~----~~~CP~Cr~ 357 (369)
...+..|.||.+. ++.+. .-.|...||..|+.+=|.. ...||.|+.
T Consensus 5 ~~~~~~C~vC~~~---g~ll~-CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 5 QKNEDECAVCRDG---GELIC-CDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp CSCCCSBSSSSCC---SSCEE-CSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCccCCCC---CCEEE-cCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 3457899999863 44444 3348999999999965533 456999964
No 96
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=72.26 E-value=4.1 Score=28.78 Aligned_cols=50 Identities=18% Similarity=0.365 Sum_probs=33.4
Q ss_pred CCcccccccccccccCceeeeeCCCCCccChHhHHHHHh-----cCCCCCCcCCCC
Q 044271 309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLR-----LNDKCPVCRNSA 359 (369)
Q Consensus 309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~-----~~~~CP~Cr~~~ 359 (369)
.....| ||...+.++...+..-.|..=||..|+..=-. ....||.|+...
T Consensus 10 ~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 10 LVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 344566 99998864443333334899999999963221 356799998764
No 97
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=71.94 E-value=1.1 Score=31.15 Aligned_cols=50 Identities=20% Similarity=0.357 Sum_probs=33.8
Q ss_pred CCCccccccccccc-ccCceeeeeCCCCCccChHhHHHHH--hcCCCCCCcCC
Q 044271 308 GPNSSACPICLSEF-LSQETIRCIPECKHCFHAECIDEWL--RLNDKCPVCRN 357 (369)
Q Consensus 308 ~~~~~~C~ICL~~~-~~~~~~~~l~~C~H~fH~~Ci~~wl--~~~~~CP~Cr~ 357 (369)
...+..|.||.+.- .+.+.+...-.|.-.||..|+..=. +....||.|+.
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 45578999998763 3344444444589999999998632 23456888854
No 98
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=71.62 E-value=2.7 Score=28.69 Aligned_cols=35 Identities=23% Similarity=0.494 Sum_probs=26.8
Q ss_pred CCcccccccccccccCceeeeeC-CCCCccChHhHH
Q 044271 309 PNSSACPICLSEFLSQETIRCIP-ECKHCFHAECID 343 (369)
Q Consensus 309 ~~~~~C~ICL~~~~~~~~~~~l~-~C~H~fH~~Ci~ 343 (369)
.....|.+|...+.+++..+..- .|.--||..|+.
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 44578999999998777666565 599999999985
No 99
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=71.10 E-value=0.24 Score=33.33 Aligned_cols=47 Identities=23% Similarity=0.688 Sum_probs=33.0
Q ss_pred CcccccccccccccCceeeeeCCCCCccChHhHHHHHhc----CCCCCCcCCCCc
Q 044271 310 NSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL----NDKCPVCRNSAT 360 (369)
Q Consensus 310 ~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~----~~~CP~Cr~~~~ 360 (369)
.+..|.||.+. ++.+.-- .|...||..|+++=+.. ...||.|+....
T Consensus 4 ~~~~C~vC~~~---g~ll~Cd-~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 54 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLLMCD-TCSRVYHLDCLDPPLKTIPKGMWICPRCQDQML 54 (60)
T ss_dssp CCSSCTTTCCC---SSCEECS-SSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHH
T ss_pred CCCCCcCCCCC---CcEEEcC-CCCcCEECCcCCCCcCCCCCCceEChhccChhh
Confidence 46789999874 4444433 48999999999975533 455998865443
No 100
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=70.30 E-value=0.71 Score=32.81 Aligned_cols=45 Identities=33% Similarity=0.679 Sum_probs=29.4
Q ss_pred cccccccccccCceeeeeCCCCCccChHhHHHHHhc----C-CCCCCcCCC
Q 044271 313 ACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL----N-DKCPVCRNS 358 (369)
Q Consensus 313 ~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~----~-~~CP~Cr~~ 358 (369)
.|.||-..-..++.+ .--.|...||..|+++-|.. . -.||.|+++
T Consensus 28 ~C~vC~~~~d~~~ll-~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~d 77 (77)
T 3shb_A 28 ACHLCGGRQDPDKQL-MCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 77 (77)
T ss_dssp SBTTTCCCSCGGGEE-ECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC--
T ss_pred cCCccCCCCCCccee-EeCCCCCccCcccCCCcccCCCCCCceECcCcccc
Confidence 577776654333333 33358999999999976643 3 579999864
No 101
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=68.36 E-value=3 Score=31.90 Aligned_cols=45 Identities=24% Similarity=0.512 Sum_probs=29.0
Q ss_pred ccccccccccc------cCceeeeeCCCCCccChHhHHHHH-------hcCCCCCCcC
Q 044271 312 SACPICLSEFL------SQETIRCIPECKHCFHAECIDEWL-------RLNDKCPVCR 356 (369)
Q Consensus 312 ~~C~ICL~~~~------~~~~~~~l~~C~H~fH~~Ci~~wl-------~~~~~CP~Cr 356 (369)
+.|.||+..-. +++.+..--.|+..||..|++.+. +....||.|+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 57999998642 123444444589999999998652 2245566664
No 102
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=66.10 E-value=22 Score=25.66 Aligned_cols=52 Identities=19% Similarity=0.378 Sum_probs=37.5
Q ss_pred CCcccccccccccccC---ceeeeeCCCCCccChHhHHHHHh-cCCCCCCcCCCCc
Q 044271 309 PNSSACPICLSEFLSQ---ETIRCIPECKHCFHAECIDEWLR-LNDKCPVCRNSAT 360 (369)
Q Consensus 309 ~~~~~C~ICL~~~~~~---~~~~~l~~C~H~fH~~Ci~~wl~-~~~~CP~Cr~~~~ 360 (369)
.....|.||-+++... +.-...-.|+-...+.|.+--.+ .+..||-|+....
T Consensus 14 ~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 14 LDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp CSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred cCCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 3457999999997543 33333335777888999987654 4788999998874
No 103
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=65.63 E-value=1.9 Score=27.84 Aligned_cols=44 Identities=18% Similarity=0.300 Sum_probs=30.5
Q ss_pred cccccccccccCceeeeeC-CCCCccChHhHHHHH----hcCCCCCCcC
Q 044271 313 ACPICLSEFLSQETIRCIP-ECKHCFHAECIDEWL----RLNDKCPVCR 356 (369)
Q Consensus 313 ~C~ICL~~~~~~~~~~~l~-~C~H~fH~~Ci~~wl----~~~~~CP~Cr 356 (369)
-|.||...+.+++..+.-- .|..=||..|+..-. ..+..||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 4788999887665444444 488899999976422 3567799885
No 104
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=64.97 E-value=0.8 Score=33.73 Aligned_cols=48 Identities=21% Similarity=0.371 Sum_probs=33.3
Q ss_pred CCcccccccccccccCceeeeeCCCCCccChHhHHHHHhc----CCCCCCcCC
Q 044271 309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL----NDKCPVCRN 357 (369)
Q Consensus 309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~----~~~CP~Cr~ 357 (369)
..+..|.||...-..++.+. .-.|...||..|+++=|.. ...||.|+.
T Consensus 14 ~~~~~C~vC~~~~~~~~ll~-CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 14 IDSYICQVCSRGDEDDKLLF-CDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCSSSCCSGGGGGCEE-CTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred cCCCCCccCCCcCCCCCEEE-cCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 34568999998754444444 3358999999999854432 456999965
No 105
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.41 E-value=1.6 Score=30.90 Aligned_cols=46 Identities=24% Similarity=0.577 Sum_probs=31.5
Q ss_pred cccccccccccccCceeeeeCCCCCccChHhHHHHHhc-----CCCCCCcCC
Q 044271 311 SSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL-----NDKCPVCRN 357 (369)
Q Consensus 311 ~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~-----~~~CP~Cr~ 357 (369)
+..|.||...-..++.+. --.|...||..|+++=|.. .-.||.|+.
T Consensus 26 ~c~C~vC~~~~~~~~ll~-CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 26 SCSCRVCGGKHEPNMQLL-CDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSSCSSSCCCCCSTTEEE-CSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCCcCcCCcCCCCCEEE-cCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 348899987543444443 3348999999999964432 456999875
No 106
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=61.93 E-value=4.9 Score=23.65 Aligned_cols=25 Identities=8% Similarity=0.012 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHhhhhceecccc
Q 044271 237 LALSIAIPALICASAIGICACCTDR 261 (369)
Q Consensus 237 i~l~i~~~~l~~~~~~~~~~~~~~R 261 (369)
++.++.++++++++++.+.++.+||
T Consensus 10 IaagVvglll~vii~l~~~~~iRRr 34 (35)
T 1iij_A 10 IIATVVGVLLFLILVVVVGILIKRR 34 (35)
T ss_dssp HHHHHHHHHHHHHHTTTTTHHHHHC
T ss_pred eHHHHHHHHHHHHHHHHhheEEeec
Confidence 3444444444444444444444333
No 107
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=61.32 E-value=1.9 Score=29.85 Aligned_cols=45 Identities=33% Similarity=0.669 Sum_probs=29.7
Q ss_pred cccccccccccCceeeeeCCCCCccChHhHHHHHhc-----CCCCCCcCCC
Q 044271 313 ACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL-----NDKCPVCRNS 358 (369)
Q Consensus 313 ~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~-----~~~CP~Cr~~ 358 (369)
.|.||...-..++.+ .--.|...||..|+++=|.. .-.||.|+.+
T Consensus 20 ~C~~C~~~~~~~~ll-~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 20 ACHLCGGRQDPDKQL-MCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp SBTTTCCCSCGGGEE-ECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCcCCCCcCCCCCEE-EcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 567787653334433 33358999999999964432 4569999753
No 108
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=60.81 E-value=4 Score=27.64 Aligned_cols=50 Identities=20% Similarity=0.464 Sum_probs=34.5
Q ss_pred CCccccccccccccc-CceeeeeCCCCCccChHhHHHHH-------hcCCCCCCcCCC
Q 044271 309 PNSSACPICLSEFLS-QETIRCIPECKHCFHAECIDEWL-------RLNDKCPVCRNS 358 (369)
Q Consensus 309 ~~~~~C~ICL~~~~~-~~~~~~l~~C~H~fH~~Ci~~wl-------~~~~~CP~Cr~~ 358 (369)
..+..|.||...... ...+...-.|.-.||..|+.+=+ .....||.|+..
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 456899999986432 33444444599999999998643 234669988654
No 109
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=59.00 E-value=2.6 Score=29.55 Aligned_cols=49 Identities=27% Similarity=0.567 Sum_probs=34.1
Q ss_pred cccccccccccccCceeeeeCCCCCccChHhHHHHH---------hcCCCCCCcCCCCcC
Q 044271 311 SSACPICLSEFLSQETIRCIPECKHCFHAECIDEWL---------RLNDKCPVCRNSATP 361 (369)
Q Consensus 311 ~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl---------~~~~~CP~Cr~~~~~ 361 (369)
...| ||...+..+..|.--. |..=||..|+..-. .....||.|+..-.+
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd~-C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~p 73 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCDR-CEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSGP 73 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECSS-SCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSCS
T ss_pred CCEE-ECCCccCCCCEEEeCC-CCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccCc
Confidence 4567 8998877556655444 99999999985321 257789999765433
No 110
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=57.88 E-value=3.4 Score=30.65 Aligned_cols=45 Identities=22% Similarity=0.411 Sum_probs=32.1
Q ss_pred ccccccccccccCceeeeeCCCCCccChHhHHHHHh---cCCCCCCcCCC
Q 044271 312 SACPICLSEFLSQETIRCIPECKHCFHAECIDEWLR---LNDKCPVCRNS 358 (369)
Q Consensus 312 ~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~---~~~~CP~Cr~~ 358 (369)
..| ||-.....+..|.-- .|.--||..|+..=+. ....||.|+..
T Consensus 29 vrC-iC~~~~~~~~mi~Cd-~C~~w~H~~C~~~~~~~~p~~w~C~~C~~~ 76 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMICCD-KCSVWQHIDCMGIDRQHIPDTYLCERCQPR 76 (98)
T ss_dssp CCC-TTSCCSCSSCEEEBT-TTCBEEETTTTTCCTTSCCSSBCCTTTSSS
T ss_pred EEe-ECCCccCCCcEEEcC-CCCCcCcCcCCCCCccCCCCCEECCCCcCC
Confidence 457 898877666665544 4999999999976332 24569999753
No 111
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=55.59 E-value=2.2 Score=35.14 Aligned_cols=48 Identities=19% Similarity=0.438 Sum_probs=32.9
Q ss_pred CCcccccccccccccCceeeeeCCCCCccChHhHHHHH-----hcCCCCCCcCC
Q 044271 309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWL-----RLNDKCPVCRN 357 (369)
Q Consensus 309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl-----~~~~~CP~Cr~ 357 (369)
.....| ||...+.++......-.|..-||..|+..-- .....||.|+.
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence 345788 9999876544444444599999999996321 23567999975
No 112
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=48.96 E-value=23 Score=22.97 Aligned_cols=22 Identities=14% Similarity=0.138 Sum_probs=9.3
Q ss_pred hHHHHHHHHHHHHHH-Hhhhhce
Q 044271 235 RILALSIAIPALICA-SAIGICA 256 (369)
Q Consensus 235 ~ii~l~i~~~~l~~~-~~~~~~~ 256 (369)
++|++++++.+++++ +.++++.
T Consensus 10 WiIi~svl~GLLLL~Lii~~LwK 32 (54)
T 2l8s_A 10 WVILLSAFAGLLLLMLLILALWK 32 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455444443333 3333333
No 113
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=48.63 E-value=3.3 Score=31.35 Aligned_cols=47 Identities=19% Similarity=0.468 Sum_probs=31.5
Q ss_pred cccccccccccCceeeeeCCCCCccChHhHHHHHhc----CCCCCCcCCCCc
Q 044271 313 ACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL----NDKCPVCRNSAT 360 (369)
Q Consensus 313 ~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~----~~~CP~Cr~~~~ 360 (369)
.|.||-+.-.+...+. -..|...||..|+++=|.. ...||.|+....
T Consensus 56 ~C~~C~~~~~~~~ll~-Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c~~ 106 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLV-CDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRICIS 106 (111)
T ss_dssp CCTTTCCCSCCTTEEE-CSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCCSC
T ss_pred cccccCccCCCCCeeE-CCCCCcHHhHHhcCCccccCCCCCcCCcCCcCcCC
Confidence 6778876644333333 4458999999999875543 456998866543
No 114
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=48.52 E-value=17 Score=27.30 Aligned_cols=47 Identities=21% Similarity=0.516 Sum_probs=30.0
Q ss_pred CCCcccccccccccccCceeeeeC-CCCCccChHhHHHHHhc----CCCCCCcCCCC
Q 044271 308 GPNSSACPICLSEFLSQETIRCIP-ECKHCFHAECIDEWLRL----NDKCPVCRNSA 359 (369)
Q Consensus 308 ~~~~~~C~ICL~~~~~~~~~~~l~-~C~H~fH~~Ci~~wl~~----~~~CP~Cr~~~ 359 (369)
...++.|.+|.+ .|+.+.--. .|...||..|+. |.. ...||-|+-.+
T Consensus 12 ~~~~~~C~~C~~---~G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~ 63 (107)
T 4gne_A 12 QMHEDYCFQCGD---GGELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDE 63 (107)
T ss_dssp CSSCSSCTTTCC---CSEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTT
T ss_pred CCCCCCCCcCCC---CCcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCc
Confidence 345788999983 344333220 388999999998 543 34588665443
No 115
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=48.49 E-value=10 Score=25.50 Aligned_cols=42 Identities=24% Similarity=0.522 Sum_probs=31.6
Q ss_pred CcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcC
Q 044271 310 NSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATP 361 (369)
Q Consensus 310 ~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~ 361 (369)
....|+-|-+.+..++.+... -+..||..|+ +|-.|+..|..
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~~--~~~~~H~~CF--------~C~~C~~~L~~ 51 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFPE 51 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEEE--TTEEEETTTS--------SCTTTCCCCGG
T ss_pred CCccchhcCccccCCceEEEe--CcCeeCcCCC--------cccCCCCCCCC
Confidence 356899999998887765433 5678998887 58888887754
No 116
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=47.99 E-value=4.1 Score=28.10 Aligned_cols=20 Identities=25% Similarity=0.468 Sum_probs=15.4
Q ss_pred HHHHHhcCCCCCCcCCCCcC
Q 044271 342 IDEWLRLNDKCPVCRNSATP 361 (369)
Q Consensus 342 i~~wl~~~~~CP~Cr~~~~~ 361 (369)
++.||..-..||+|+.++.-
T Consensus 1 md~~LLeiL~CP~ck~~L~~ 20 (69)
T 2pk7_A 1 MDTKLLDILACPICKGPLKL 20 (69)
T ss_dssp --CCGGGTCCCTTTCCCCEE
T ss_pred CChHHHhheeCCCCCCcCeE
Confidence 46678888999999998864
No 117
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=47.93 E-value=13 Score=25.67 Aligned_cols=45 Identities=27% Similarity=0.621 Sum_probs=28.8
Q ss_pred CcccccccccccccCceeeeeCC--CC-CccChHhHHHHHhc----CCCCCCcCCCC
Q 044271 310 NSSACPICLSEFLSQETIRCIPE--CK-HCFHAECIDEWLRL----NDKCPVCRNSA 359 (369)
Q Consensus 310 ~~~~C~ICL~~~~~~~~~~~l~~--C~-H~fH~~Ci~~wl~~----~~~CP~Cr~~~ 359 (369)
+...| ||-... .++.|. .-. |. .-||..|+. |.. +..||.|+..-
T Consensus 15 ~~~~C-~C~~~~-~g~MI~-CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 15 EPTYC-LCHQVS-YGEMIG-CDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp SCCCS-TTCCCS-CSSEEC-CSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCEE-ECCCCC-CCCEeE-eeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 45677 898764 354333 223 44 689999998 433 45699997654
No 118
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=47.79 E-value=15 Score=26.76 Aligned_cols=46 Identities=26% Similarity=0.613 Sum_probs=29.4
Q ss_pred CcccccccccccccCceeeeeCC--CC-CccChHhHHHHHhc----CCCCCCcCCCCc
Q 044271 310 NSSACPICLSEFLSQETIRCIPE--CK-HCFHAECIDEWLRL----NDKCPVCRNSAT 360 (369)
Q Consensus 310 ~~~~C~ICL~~~~~~~~~~~l~~--C~-H~fH~~Ci~~wl~~----~~~CP~Cr~~~~ 360 (369)
....| ||-.... ++.|. .-. |. .-||..|+. |.. +..||.|+..-.
T Consensus 35 e~~yC-iC~~~~~-g~MI~-CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 35 EPTYC-LCHQVSY-GEMIG-CDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 87 (91)
T ss_dssp CCBCS-TTCCBCC-SCCCC-CSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCCS
T ss_pred CCcEE-ECCCCCC-CCEeE-ecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcCC
Confidence 44667 9988643 44333 223 44 579999998 433 456999987544
No 119
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=47.79 E-value=3.3 Score=28.43 Aligned_cols=20 Identities=20% Similarity=0.167 Sum_probs=16.3
Q ss_pred HHHHHhcCCCCCCcCCCCcC
Q 044271 342 IDEWLRLNDKCPVCRNSATP 361 (369)
Q Consensus 342 i~~wl~~~~~CP~Cr~~~~~ 361 (369)
+++||..-..||+|+.+|.-
T Consensus 3 md~~LLeiL~CP~ck~~L~~ 22 (67)
T 2jny_A 3 LDPQLLEVLACPKDKGPLRY 22 (67)
T ss_dssp SCGGGTCCCBCTTTCCBCEE
T ss_pred CCHHHHHHhCCCCCCCcCeE
Confidence 45788888999999998753
No 120
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=46.84 E-value=34 Score=24.12 Aligned_cols=41 Identities=20% Similarity=0.430 Sum_probs=31.2
Q ss_pred CCCcccccccccccccCceeeeeCCCCCccChHhHHHHHhc
Q 044271 308 GPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL 348 (369)
Q Consensus 308 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~ 348 (369)
......|.+|-|.+++..-|.--..=.|-|.-.|-+..+++
T Consensus 12 ~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 12 NSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp SCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 34567999999999887766522122799999999999875
No 121
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=45.48 E-value=16 Score=26.02 Aligned_cols=38 Identities=16% Similarity=0.337 Sum_probs=29.3
Q ss_pred CCCcccccccccccccCceeeeeCCCCCccChHhHHHH
Q 044271 308 GPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEW 345 (369)
Q Consensus 308 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~w 345 (369)
..+...|.+|-..|..-..-.....||++|...|....
T Consensus 18 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 18 DEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 34457999999999876555555569999999997664
No 122
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=44.03 E-value=16 Score=25.87 Aligned_cols=37 Identities=22% Similarity=0.452 Sum_probs=28.8
Q ss_pred CCcccccccccccccCceeeeeCCCCCccChHhHHHH
Q 044271 309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEW 345 (369)
Q Consensus 309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~w 345 (369)
.+...|.+|-..|..-..-.....||++|...|....
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred ccCCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 4456899999999876655555579999999998754
No 123
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.00 E-value=12 Score=25.70 Aligned_cols=42 Identities=29% Similarity=0.594 Sum_probs=31.5
Q ss_pred CcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcCC
Q 044271 310 NSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPV 362 (369)
Q Consensus 310 ~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~~ 362 (369)
....|+.|-+.+..++.+.. -+..||.+|+ +|-.|+..|...
T Consensus 8 ~~~~C~~C~~~I~~~~~v~a---~~~~~H~~CF--------~C~~C~~~L~~~ 49 (76)
T 2cu8_A 8 MASKCPKCDKTVYFAEKVSS---LGKDWHKFCL--------KCERCSKTLTPG 49 (76)
T ss_dssp CCCBCTTTCCBCCTTTEEEE---TTEEEETTTC--------BCSSSCCBCCTT
T ss_pred CCCCCcCCCCEeECCeEEEE---CCeEeeCCCC--------CCCCCCCccCCC
Confidence 35789999999887776552 4688998775 488888887643
No 124
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=43.69 E-value=2.7 Score=29.15 Aligned_cols=49 Identities=18% Similarity=0.230 Sum_probs=33.0
Q ss_pred CcccccccccccccCceeeeeCCCCCccChHhHHHHH----hcCCCCCCcCCCC
Q 044271 310 NSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWL----RLNDKCPVCRNSA 359 (369)
Q Consensus 310 ~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl----~~~~~CP~Cr~~~ 359 (369)
....| ||-..+.+++..+..-.|..=||..|+..-- .....||.|+..-
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~ 67 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELS 67 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHC
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCC
Confidence 34678 7998877775333333489999999987532 2345699997543
No 125
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.01 E-value=23 Score=24.72 Aligned_cols=43 Identities=23% Similarity=0.595 Sum_probs=30.5
Q ss_pred CCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcCC
Q 044271 309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPV 362 (369)
Q Consensus 309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~~ 362 (369)
.....|+-|-+.+.+++.+.. -+..||.+|+ +|-.|+..|...
T Consensus 13 ~~~~~C~~C~~~I~~~e~v~a---~~~~wH~~CF--------~C~~C~~~L~~~ 55 (82)
T 2co8_A 13 GAGDLCALCGEHLYVLERLCV---NGHFFHRSCF--------RCHTCEATLWPG 55 (82)
T ss_dssp CSSCBCSSSCCBCCTTTBCCB---TTBCCBTTTC--------BCSSSCCBCCTT
T ss_pred CCCCCCcccCCCcccceEEEE---CCCeeCCCcC--------EEcCCCCCcCCC
Confidence 345789999999887776652 4688998884 466777666543
No 126
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.37 E-value=19 Score=24.28 Aligned_cols=41 Identities=22% Similarity=0.470 Sum_probs=28.2
Q ss_pred ccccccccccccc--CceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcC
Q 044271 311 SSACPICLSEFLS--QETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATP 361 (369)
Q Consensus 311 ~~~C~ICL~~~~~--~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~ 361 (369)
...|+-|-+.+.. ++.+... -+..||.+|+ +|-.|+.+|..
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~a--~~~~wH~~CF--------~C~~C~~~L~~ 47 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYISF--EERQWHNDCF--------NCKKCSLSLVG 47 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEEC--SSCEECTTTC--------BCSSSCCBCTT
T ss_pred CCCCcCCCccccCCCCcceEEE--CCcccCcccC--------EeccCCCcCCC
Confidence 4689999998875 3333222 5788998775 58888887753
No 127
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=42.23 E-value=13 Score=27.84 Aligned_cols=50 Identities=22% Similarity=0.411 Sum_probs=34.9
Q ss_pred cccccccccccccCceeeeeC-CCCCccChHhHHHHH----------hcCCCCCCcCCCCc
Q 044271 311 SSACPICLSEFLSQETIRCIP-ECKHCFHAECIDEWL----------RLNDKCPVCRNSAT 360 (369)
Q Consensus 311 ~~~C~ICL~~~~~~~~~~~l~-~C~H~fH~~Ci~~wl----------~~~~~CP~Cr~~~~ 360 (369)
...|.||...|.+.......- .|..=||..|+..=- .....||.|+..-.
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~ 63 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE 63 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCC
Confidence 357999999997665444442 489999999986321 03567999976543
No 128
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=42.11 E-value=16 Score=26.44 Aligned_cols=37 Identities=16% Similarity=0.367 Sum_probs=28.8
Q ss_pred CcccccccccccccCceeeeeCCCCCccChHhHHHHH
Q 044271 310 NSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWL 346 (369)
Q Consensus 310 ~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl 346 (369)
+...|.+|...|..-..-.....||++|...|...+.
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 3568999999998665545555699999999987654
No 129
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=41.87 E-value=5.9 Score=34.16 Aligned_cols=47 Identities=32% Similarity=0.634 Sum_probs=28.1
Q ss_pred cccccccccccccCceeeeeCCCCCccChHhHHHHHhc-----CCCCCCcCCC
Q 044271 311 SSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL-----NDKCPVCRNS 358 (369)
Q Consensus 311 ~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~-----~~~CP~Cr~~ 358 (369)
+..|.+|...=..++.+ ..-.|...||..|+++=|.. ...||.|+.+
T Consensus 174 ~c~C~vC~~~~~~~~lL-~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 174 VCACHLCGGRQDPDKQL-MCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp TTSCSSSCCCCC--CCE-ECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCCCcCCCCCCCCCCeE-EcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 34799998753333333 33358999999999965532 4569999753
No 130
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.39 E-value=11 Score=25.38 Aligned_cols=42 Identities=19% Similarity=0.423 Sum_probs=28.8
Q ss_pred cccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcCC
Q 044271 311 SSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPV 362 (369)
Q Consensus 311 ~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~~ 362 (369)
...|+.|-+.+..++.+... -+..||.+|+ +|-.|+.+|...
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~~ 46 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRKMEY--KGSSWHETCF--------ICHRCQQPIGTK 46 (72)
T ss_dssp CCCBSSSCCCCCSSSCEEEE--TTEEEETTTT--------CCSSSCCCCCSS
T ss_pred CCCCccCCCcccCCceEEEE--CcCeecccCC--------cccccCCccCCC
Confidence 35899999988876544333 4678887765 477887777543
No 131
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=41.27 E-value=41 Score=20.79 Aligned_cols=26 Identities=4% Similarity=-0.170 Sum_probs=13.1
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhceec
Q 044271 233 VFRILALSIAIPALICASAIGICACC 258 (369)
Q Consensus 233 ~~~ii~l~i~~~~l~~~~~~~~~~~~ 258 (369)
+...++.++++++++...+++++..+
T Consensus 12 IA~gVVgGv~~v~ii~~~~~~~~RRR 37 (44)
T 2l2t_A 12 IAAGVIGGLFILVIVGLTFAVYVRRK 37 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEeehHHHHHHHHHHHHHHHHhhhh
Confidence 33344444555555555555555543
No 132
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.92 E-value=18 Score=25.77 Aligned_cols=38 Identities=21% Similarity=0.398 Sum_probs=28.1
Q ss_pred CCCcccccccccccccCceeeeeCCCCCccChHhHHHH
Q 044271 308 GPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEW 345 (369)
Q Consensus 308 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~w 345 (369)
..+...|.+|-.+|..-..--....||.+|...|....
T Consensus 11 d~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 48 (84)
T 1x4u_A 11 TNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFK 48 (84)
T ss_dssp CCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEE
T ss_pred CCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCCc
Confidence 34457899999999766544445569999999996643
No 133
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=39.25 E-value=9.1 Score=21.62 Aligned_cols=28 Identities=21% Similarity=0.638 Sum_probs=21.2
Q ss_pred ccccccccccccCceeeeeCCCCCccChHhH
Q 044271 312 SACPICLSEFLSQETIRCIPECKHCFHAECI 342 (369)
Q Consensus 312 ~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci 342 (369)
+.|+.|-..+-..+++.. -|..||+.|+
T Consensus 4 ~~C~~C~k~Vy~~Ek~~~---~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVNC---LDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCCS---SSSCCCGGGC
T ss_pred CcCCccCCEEecceeEEE---CCeEecccCC
Confidence 579999888777766542 5789999884
No 134
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.93 E-value=13 Score=25.18 Aligned_cols=41 Identities=20% Similarity=0.450 Sum_probs=28.3
Q ss_pred cccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcC
Q 044271 311 SSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATP 361 (369)
Q Consensus 311 ~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~ 361 (369)
...|+-|-+.+..++.+... -+..||.+|+ +|-.|+.+|..
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~ 45 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKLEY--GGQTWHEHCF--------LCSGCEQPLGS 45 (72)
T ss_dssp CCBCSSSCCBCCSSSCEECS--TTCCEETTTC--------BCTTTCCBTTT
T ss_pred CCCCccCCCccccCccEEEE--CccccCcccC--------eECCCCCcCCC
Confidence 46899999988875443322 5788888775 47778777754
No 135
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.89 E-value=13 Score=25.43 Aligned_cols=43 Identities=23% Similarity=0.492 Sum_probs=30.0
Q ss_pred CCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcC
Q 044271 309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATP 361 (369)
Q Consensus 309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~ 361 (369)
.....|+-|-+.+..++.+... -+..||.+|+ +|-.|+.+|..
T Consensus 9 ~~~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~ 51 (77)
T 1g47_A 9 LASATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFPE 51 (77)
T ss_dssp CCCCBCSSSCCBCCSTTTCEEE--TTEEECTTTC--------CCTTTCCCCGG
T ss_pred CCCCCchhcCCccCCCceEEEe--CccEeccccC--------eECCCCCCCCC
Confidence 3457899999998765554323 4678898775 47778777754
No 136
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.61 E-value=29 Score=24.09 Aligned_cols=40 Identities=25% Similarity=0.562 Sum_probs=30.0
Q ss_pred CcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCc
Q 044271 310 NSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSAT 360 (369)
Q Consensus 310 ~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~ 360 (369)
....|+-|-+.+.+++.+.. -+..||.+|+ +|-.|+..|.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a---~~~~wH~~CF--------~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA---LDKQWHVSCF--------KCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE---TTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEE---CCcccccccC--------CcCcCCCCcC
Confidence 45789999999887776553 4678898774 4888887775
No 137
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=38.54 E-value=3 Score=27.52 Aligned_cols=19 Identities=21% Similarity=0.412 Sum_probs=14.8
Q ss_pred HHHHHhcCCCCCCcCCCCc
Q 044271 342 IDEWLRLNDKCPVCRNSAT 360 (369)
Q Consensus 342 i~~wl~~~~~CP~Cr~~~~ 360 (369)
+++||..-..||.|+.++.
T Consensus 3 ~d~~lL~iL~CP~c~~~L~ 21 (56)
T 2kpi_A 3 LEAGLLEILACPACHAPLE 21 (56)
T ss_dssp CCCSCTTSCCCSSSCSCEE
T ss_pred CCHHHHhheeCCCCCCcce
Confidence 3457777889999999864
No 138
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=37.22 E-value=4.2 Score=31.41 Aligned_cols=49 Identities=18% Similarity=0.398 Sum_probs=31.9
Q ss_pred CCCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcC
Q 044271 308 GPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCR 356 (369)
Q Consensus 308 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr 356 (369)
......|..|-..|..-..-.....||.+|...|..........|-.|.
T Consensus 16 d~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~ 64 (120)
T 1y02_A 16 TGLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQ 64 (120)
T ss_dssp ----CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHH
T ss_pred ccccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHH
Confidence 3445799999999976554445557999999999877665566676664
No 139
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=37.00 E-value=20 Score=27.68 Aligned_cols=36 Identities=22% Similarity=0.391 Sum_probs=27.7
Q ss_pred CcccccccccccccCceeeeeCCCCCccChHhHHHH
Q 044271 310 NSSACPICLSEFLSQETIRCIPECKHCFHAECIDEW 345 (369)
Q Consensus 310 ~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~w 345 (369)
....|.+|-..|..-..-.....||++|...|....
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 346899999999866544455569999999997654
No 140
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=36.84 E-value=3.9 Score=28.13 Aligned_cols=19 Identities=16% Similarity=0.146 Sum_probs=14.7
Q ss_pred HHHHhcCCCCCCcCCCCcC
Q 044271 343 DEWLRLNDKCPVCRNSATP 361 (369)
Q Consensus 343 ~~wl~~~~~CP~Cr~~~~~ 361 (369)
+.||..-..||+|+.+|.-
T Consensus 2 d~~LL~iL~CP~ck~~L~~ 20 (68)
T 2jr6_A 2 EKKFLDILVCPVTKGRLEY 20 (68)
T ss_dssp CCSSSCCCBCSSSCCBCEE
T ss_pred ChHHhhheECCCCCCcCeE
Confidence 4567777889999998753
No 141
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=36.56 E-value=5.1 Score=27.50 Aligned_cols=47 Identities=26% Similarity=0.603 Sum_probs=31.5
Q ss_pred CCcccccccccccccCceeeeeCCCCCccChHhHHHHH---hcCCCCCCcCC
Q 044271 309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWL---RLNDKCPVCRN 357 (369)
Q Consensus 309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl---~~~~~CP~Cr~ 357 (369)
.+...| ||-..+..+..|.-- .|..=||..|+..=- .....||.|+.
T Consensus 17 ~~~~~C-iC~~~~~~~~MIqCd-~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFAGRPMIECN-ECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCTTCCEEECT-TTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCCCCCEEECC-CCCccccccccCcCcccCCCcEECCCCCC
Confidence 345678 998877644455544 499999999997522 13456888864
No 142
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=36.52 E-value=52 Score=21.31 Aligned_cols=17 Identities=6% Similarity=-0.015 Sum_probs=7.7
Q ss_pred hhHHHHHHHHHHHHHHH
Q 044271 234 FRILALSIAIPALICAS 250 (369)
Q Consensus 234 ~~ii~l~i~~~~l~~~~ 250 (369)
+++|++++++.++++++
T Consensus 12 ~wiIi~svl~GLllL~l 28 (54)
T 2knc_A 12 IWWVLVGVLGGLLLLTI 28 (54)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34555555444443333
No 143
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.42 E-value=19 Score=24.23 Aligned_cols=40 Identities=25% Similarity=0.545 Sum_probs=23.8
Q ss_pred cccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCc
Q 044271 311 SSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSAT 360 (369)
Q Consensus 311 ~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~ 360 (369)
...|+.|-+.+...+.+... -+..||.+|+ +|-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGVVA--LDRVFHVGCF--------VCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCCSSSCCEEC--SSSEECTTTC--------BCSSSCCBCT
T ss_pred CCCCccCCCccCCCceEEEE--CCCeEcccCC--------cccccCCcCC
Confidence 35777777776654322212 4577777664 4677776663
No 144
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=36.40 E-value=9.5 Score=26.26 Aligned_cols=14 Identities=21% Similarity=0.370 Sum_probs=7.7
Q ss_pred cccccccccccccC
Q 044271 311 SSACPICLSEFLSQ 324 (369)
Q Consensus 311 ~~~C~ICL~~~~~~ 324 (369)
-..|..|-..+..+
T Consensus 27 CF~C~~C~~~L~~~ 40 (76)
T 1iml_A 27 CLKCEKCGKTLTSG 40 (76)
T ss_dssp TCBCTTTCCBCCTT
T ss_pred CCCccccCccCCCC
Confidence 35566666555544
No 145
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=36.35 E-value=9.8 Score=26.72 Aligned_cols=49 Identities=22% Similarity=0.499 Sum_probs=33.0
Q ss_pred CcccccccccccccCceeeee-CCCCCccChHhHHHHH---------hcCCCCCCcCCCC
Q 044271 310 NSSACPICLSEFLSQETIRCI-PECKHCFHAECIDEWL---------RLNDKCPVCRNSA 359 (369)
Q Consensus 310 ~~~~C~ICL~~~~~~~~~~~l-~~C~H~fH~~Ci~~wl---------~~~~~CP~Cr~~~ 359 (369)
....| ||-.....+..|.-- +.|..=||..|+..=- ..+..||.|+..-
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 34677 898876666655544 0399999999996421 1356699997644
No 146
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.72 E-value=23 Score=24.56 Aligned_cols=41 Identities=17% Similarity=0.500 Sum_probs=29.8
Q ss_pred cccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcC
Q 044271 311 SSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATP 361 (369)
Q Consensus 311 ~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~ 361 (369)
...|+.|-+.+..++.+... -+..||.+|+ +|-.|+.+|..
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~ 55 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVEY--KGTVWHKDCF--------TCSNCKQVIGT 55 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEEC--SSCEEETTTC--------CCSSSCCCCTT
T ss_pred CCcCccCCcccccCceEEEE--CccccccccC--------chhhCCCccCC
Confidence 46899999998877654322 5788997775 47788887754
No 147
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=35.52 E-value=27 Score=24.04 Aligned_cols=34 Identities=26% Similarity=0.419 Sum_probs=26.4
Q ss_pred cccccccccccccCceeeeeCCCCCccChHhHHH
Q 044271 311 SSACPICLSEFLSQETIRCIPECKHCFHAECIDE 344 (369)
Q Consensus 311 ~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~ 344 (369)
+..|.+|-..|..-..-.....||++|...|...
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 3589999999986654445556999999999754
No 148
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.37 E-value=26 Score=24.93 Aligned_cols=40 Identities=23% Similarity=0.620 Sum_probs=27.4
Q ss_pred cccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcC
Q 044271 311 SSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATP 361 (369)
Q Consensus 311 ~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~ 361 (369)
...|+-|-+.+...+.+. . -+..||.+|+ +|-.|+..|..
T Consensus 15 ~~~C~~C~~~I~~~~~v~--a-~~~~~H~~CF--------~C~~C~~~L~~ 54 (91)
T 2d8y_A 15 RETCVECQKTVYPMERLL--A-NQQVFHISCF--------RCSYCNNKLSL 54 (91)
T ss_dssp SCBCTTTCCBCCTTSEEE--C-SSSEEETTTC--------BCTTTCCBCCT
T ss_pred CCcCccCCCccCCceeEE--E-CCCEECCCCC--------eeCCCCCCCCC
Confidence 468888888887766553 2 5678887775 36667666654
No 149
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=33.34 E-value=3.9 Score=28.12 Aligned_cols=19 Identities=21% Similarity=0.363 Sum_probs=14.1
Q ss_pred HHHHhcCCCCCCcCCCCcC
Q 044271 343 DEWLRLNDKCPVCRNSATP 361 (369)
Q Consensus 343 ~~wl~~~~~CP~Cr~~~~~ 361 (369)
+.||..-..||+|+.+|.-
T Consensus 2 d~~LL~iL~CP~ck~~L~~ 20 (68)
T 2hf1_A 2 DAKFLEILVCPLCKGPLVF 20 (68)
T ss_dssp CCCCEEECBCTTTCCBCEE
T ss_pred ChHHhhheECCCCCCcCeE
Confidence 4566667789999998753
No 150
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=33.04 E-value=25 Score=25.27 Aligned_cols=37 Identities=19% Similarity=0.282 Sum_probs=28.1
Q ss_pred CCcccccccccccccCceeeeeCCCCCccChHhHHHH
Q 044271 309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEW 345 (369)
Q Consensus 309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~w 345 (369)
.+...|.+|-..|..-..-.....||++|...|....
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 43 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFS 43 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEE
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCc
Confidence 3456899999999876554455569999999997654
No 151
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=32.91 E-value=29 Score=36.38 Aligned_cols=51 Identities=14% Similarity=0.156 Sum_probs=41.5
Q ss_pred CCCcccccccccccccCceeeeeCCCC-CccChHhHHHHHhcCCCCCCcCCCCcCC
Q 044271 308 GPNSSACPICLSEFLSQETIRCIPECK-HCFHAECIDEWLRLNDKCPVCRNSATPV 362 (369)
Q Consensus 308 ~~~~~~C~ICL~~~~~~~~~~~l~~C~-H~fH~~Ci~~wl~~~~~CP~Cr~~~~~~ 362 (369)
..+...|+|=++-|++ +|. +| -| +.|-+..|..||+.+.+||+=|.++...
T Consensus 888 iP~~F~cPIs~~lM~D--PVi-lp-sG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~ 939 (968)
T 3m62_A 888 VPDEFLDPLMYTIMKD--PVI-LP-ASKMNIDRSTIKAHLLSDSTDPFNRMPLKLE 939 (968)
T ss_dssp SCGGGBCTTTCSBCSS--EEE-CT-TTCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred CcHHhCCcchhhHHhC--CeE-cC-CCCEEECHHHHHHHHhcCCCCCCCCCCCCcc
Confidence 4457889999998776 333 66 76 6899999999999999999999887643
No 152
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.95 E-value=26 Score=23.37 Aligned_cols=40 Identities=25% Similarity=0.715 Sum_probs=26.4
Q ss_pred cccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcCC
Q 044271 311 SSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPV 362 (369)
Q Consensus 311 ~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~~ 362 (369)
...|+-|-+.+.. +.+.. -+..||.+|+ +|-.|+.+|...
T Consensus 5 ~~~C~~C~~~I~~-~~~~a---~~~~~H~~CF--------~C~~C~~~L~~~ 44 (70)
T 2d8x_A 5 SSGCHQCGEFIIG-RVIKA---MNNSWHPECF--------RCDLCQEVLADI 44 (70)
T ss_dssp SSBCSSSCCBCCS-CCEEE---TTEEECTTTS--------BCSSSCCBCSSS
T ss_pred CCcCccCCCEecc-eEEEE---CcccccccCC--------EeCCCCCcCCCC
Confidence 4678888888763 33322 4678887775 577787776543
No 153
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=31.90 E-value=6.1 Score=23.13 Aligned_cols=16 Identities=25% Similarity=0.642 Sum_probs=11.8
Q ss_pred cccccccccccccCce
Q 044271 311 SSACPICLSEFLSQET 326 (369)
Q Consensus 311 ~~~C~ICL~~~~~~~~ 326 (369)
+..|+||+.++...+.
T Consensus 5 GFiCP~C~~~l~s~~~ 20 (34)
T 3mjh_B 5 GFICPQCMKSLGSADE 20 (34)
T ss_dssp EEECTTTCCEESSHHH
T ss_pred ccCCcHHHHHcCCHHH
Confidence 5788888888766554
No 154
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=30.75 E-value=10 Score=28.35 Aligned_cols=23 Identities=22% Similarity=0.755 Sum_probs=15.7
Q ss_pred CCCCccChHhHHHHHhcCCCCCCcCCCC
Q 044271 332 ECKHCFHAECIDEWLRLNDKCPVCRNSA 359 (369)
Q Consensus 332 ~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~ 359 (369)
+||+.|- .=+.....||.|+.+=
T Consensus 72 ~CG~~F~-----~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 72 KCGFVFK-----AEINIPSRCPKCKSEW 94 (105)
T ss_dssp TTCCBCC-----CCSSCCSSCSSSCCCC
T ss_pred hCcCeec-----ccCCCCCCCcCCCCCc
Confidence 3999991 1134567899998853
No 155
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.61 E-value=29 Score=23.63 Aligned_cols=40 Identities=28% Similarity=0.615 Sum_probs=26.4
Q ss_pred ccccccccccccc--CceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCc
Q 044271 311 SSACPICLSEFLS--QETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSAT 360 (369)
Q Consensus 311 ~~~C~ICL~~~~~--~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~ 360 (369)
...|+.|-+.+.. .+.+... -+..||.+|+ +|-.|+.+|.
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~~a--~~~~wH~~CF--------~C~~C~~~L~ 46 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFICF--QDSQWHSECF--------NCGKCSVSLV 46 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEEEE--TTEEEEGGGC--------BCTTTCCBCS
T ss_pred CCCCccCCCcccCCCCceeEEE--CCcccCcccC--------ChhhCCCcCC
Confidence 3579999988875 3333222 5688998875 4777776664
No 156
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=30.54 E-value=4.4 Score=28.06 Aligned_cols=19 Identities=26% Similarity=0.394 Sum_probs=14.3
Q ss_pred HHHHhcCCCCCCcCCCCcC
Q 044271 343 DEWLRLNDKCPVCRNSATP 361 (369)
Q Consensus 343 ~~wl~~~~~CP~Cr~~~~~ 361 (369)
+.||..-..||+|+.++.-
T Consensus 2 d~~LL~iL~CP~ck~~L~~ 20 (70)
T 2js4_A 2 ESRLLDILVCPVCKGRLEF 20 (70)
T ss_dssp CCCCCCCCBCTTTCCBEEE
T ss_pred ChHHhhheECCCCCCcCEE
Confidence 3566777889999998753
No 157
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=30.38 E-value=4.9 Score=30.66 Aligned_cols=46 Identities=17% Similarity=0.515 Sum_probs=31.2
Q ss_pred ccccccccccccCceeeeeCCCCCccChHhHHHHHhc----CCCCCCcCCC
Q 044271 312 SACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL----NDKCPVCRNS 358 (369)
Q Consensus 312 ~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~----~~~CP~Cr~~ 358 (369)
..|.||...-.+++.+.-- .|...||..|+++=|.. ...||.|+..
T Consensus 59 ~~C~~C~~~~~~~~ll~Cd-~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~ 108 (114)
T 2kwj_A 59 KSCILCGTSENDDQLLFCD-DCDRGYHMYCLNPPVAEPPEGSWSCHLCWEL 108 (114)
T ss_dssp CCCTTTTCCTTTTTEEECS-SSCCEEETTTSSSCCSSCCSSCCCCHHHHHH
T ss_pred CccCcccccCCCCceEEcC-CCCccccccccCCCccCCCCCCeECccccch
Confidence 3688888765455554444 48999999999964433 3458888543
No 158
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=30.37 E-value=9.6 Score=25.30 Aligned_cols=42 Identities=29% Similarity=0.648 Sum_probs=26.2
Q ss_pred cccccccccccccCceeeeeCC--CC-CccChHhHHHHHhc----CCCCCCcCC
Q 044271 311 SSACPICLSEFLSQETIRCIPE--CK-HCFHAECIDEWLRL----NDKCPVCRN 357 (369)
Q Consensus 311 ~~~C~ICL~~~~~~~~~~~l~~--C~-H~fH~~Ci~~wl~~----~~~CP~Cr~ 357 (369)
...| ||.... .++.|. .-. |. .-||..|+. |.. +..||.|+.
T Consensus 10 ~~~C-~C~~~~-~g~mi~-CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYC-LCHQVS-YGEMIG-CDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CEET-TTTEEC-CSEEEE-CSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCEE-ECCCcC-CCCEEE-eCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 4566 898764 344333 223 33 679999998 433 456988854
No 159
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=28.37 E-value=12 Score=24.81 Aligned_cols=43 Identities=30% Similarity=0.656 Sum_probs=27.1
Q ss_pred CcccccccccccccCceeeeeCC--CC-CccChHhHHHHHhc----CCCCCCcCC
Q 044271 310 NSSACPICLSEFLSQETIRCIPE--CK-HCFHAECIDEWLRL----NDKCPVCRN 357 (369)
Q Consensus 310 ~~~~C~ICL~~~~~~~~~~~l~~--C~-H~fH~~Ci~~wl~~----~~~CP~Cr~ 357 (369)
+...| ||-+.. .++.|. --. |. .-||..|+. |.. +..||.|+.
T Consensus 8 e~~yC-~C~~~~-~g~mi~-CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVS-YGEMIG-CDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEEC-CSEEEE-CSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCC-CCCeeE-eeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 34566 898764 344333 333 44 689999998 433 456998864
No 160
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=28.09 E-value=11 Score=26.22 Aligned_cols=40 Identities=28% Similarity=0.667 Sum_probs=27.2
Q ss_pred cccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcC
Q 044271 311 SSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATP 361 (369)
Q Consensus 311 ~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~ 361 (369)
...|+.|-+.+.+++.+.. -+..||.+|+. |-.|+.+|..
T Consensus 7 ~~~C~~C~~~I~~~~~~~a---~~~~~H~~CF~--------C~~C~~~L~~ 46 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQC---DGRSFHRCCFL--------CMVCRKNLDS 46 (81)
T ss_dssp -CBCSSSCCBCSSTTEEEE---TTEEEESSSEE--------CSSSCCEECS
T ss_pred CCcCcCcCccccCceeEEe---CCcccccccCc--------cCCCCCCCCC
Confidence 4689999888877775442 46788877653 6777776644
No 161
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=25.86 E-value=41 Score=22.26 Aligned_cols=43 Identities=23% Similarity=0.434 Sum_probs=29.8
Q ss_pred ccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCc
Q 044271 312 SACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVC 355 (369)
Q Consensus 312 ~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~C 355 (369)
..|--|...+.+... -.-++|++.|.-+|=.=--+.-.+||-|
T Consensus 16 ~~C~~C~~~~~~~~~-y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHV-YVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEE-ECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCcc-EECCccCcCcccchhHHHHhhccCCcCC
Confidence 469999999865433 3466799999988843322445679887
No 162
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=25.38 E-value=1.2e+02 Score=18.54 Aligned_cols=17 Identities=6% Similarity=-0.015 Sum_probs=7.9
Q ss_pred hhHHHHHHHHHHHHHHH
Q 044271 234 FRILALSIAIPALICAS 250 (369)
Q Consensus 234 ~~ii~l~i~~~~l~~~~ 250 (369)
++++++++++.++++++
T Consensus 10 ~wiIi~s~l~GLllL~l 26 (42)
T 2k1a_A 10 IWWVLVGVLGGLLLLTI 26 (42)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34555555444444433
No 163
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.38 E-value=55 Score=22.41 Aligned_cols=38 Identities=18% Similarity=0.390 Sum_probs=26.6
Q ss_pred cccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCc
Q 044271 311 SSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSAT 360 (369)
Q Consensus 311 ~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~ 360 (369)
...|+-|-+.+.. +.+ . .-+..||.+|+ +|-.|+..|.
T Consensus 15 ~~~C~~C~~~I~~-~~~--~-a~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 1x62_A 15 LPMCDKCGTGIVG-VFV--K-LRDRHRHPECY--------VCTDCGTNLK 52 (79)
T ss_dssp CCCCSSSCCCCCS-SCE--E-CSSCEECTTTT--------SCSSSCCCHH
T ss_pred CCccccCCCCccC-cEE--E-ECcceeCcCcC--------eeCCCCCCCC
Confidence 4689999988775 322 2 25789998876 4777777654
No 164
>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}
Probab=25.08 E-value=37 Score=21.97 Aligned_cols=32 Identities=22% Similarity=0.336 Sum_probs=19.0
Q ss_pred ChhhhcC----CCeeeccc--CCCcceEeecCCCCCCC
Q 044271 196 CIDCEAR----GQICGFKS--RNSQEIGCFNNSKPGGS 227 (369)
Q Consensus 196 C~~C~~s----gG~Cg~~~--~~~~~~~C~~~~~~~~~ 227 (369)
|.+|..+ ||.|.... +....+.|.|+.+-.+.
T Consensus 8 ~~eC~s~pC~NgGtC~~~~~~d~~~~y~C~C~~g~~G~ 45 (55)
T 3u7u_G 8 CAEKEKTFCVNGGECFMVKDLSNPSRYLCKCPNEFTGD 45 (55)
T ss_dssp CCSTTTTTSCTTCEEEEECCC--CCCEEEEECTTEEST
T ss_pred CCCCcCCCCCCCCCcCCCCccCCCCCEeEeCCCCCcCC
Confidence 4555543 89996321 12358999998754443
No 165
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=24.73 E-value=33 Score=29.17 Aligned_cols=35 Identities=20% Similarity=0.463 Sum_probs=27.4
Q ss_pred cccccccccccccCceeeeeCCCCCccChHhHHHH
Q 044271 311 SSACPICLSEFLSQETIRCIPECKHCFHAECIDEW 345 (369)
Q Consensus 311 ~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~w 345 (369)
+..|.+|-..|..-..-.....||++|+..|....
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 57999999999766544455569999999997653
No 166
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=24.54 E-value=15 Score=24.55 Aligned_cols=42 Identities=31% Similarity=0.697 Sum_probs=26.7
Q ss_pred cccccccccccccCceeeeeCC--CC-CccChHhHHHHHhc----CCCCCCcCC
Q 044271 311 SSACPICLSEFLSQETIRCIPE--CK-HCFHAECIDEWLRL----NDKCPVCRN 357 (369)
Q Consensus 311 ~~~C~ICL~~~~~~~~~~~l~~--C~-H~fH~~Ci~~wl~~----~~~CP~Cr~ 357 (369)
...| ||-+.. .++.|. --. |. .-||..|+. |.. +..||.|+.
T Consensus 11 ~~yC-~C~~~~-~g~MI~-CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 11 PTYC-LCNQVS-YGEMIG-CDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CEET-TTTEEC-CSEEEE-CSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CcEE-ECCCCC-CCCeee-eeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 4566 898763 354333 323 33 799999998 332 456998864
No 167
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.28 E-value=79 Score=21.65 Aligned_cols=40 Identities=15% Similarity=0.373 Sum_probs=27.1
Q ss_pred CcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcC
Q 044271 310 NSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATP 361 (369)
Q Consensus 310 ~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~ 361 (369)
....|+-|-+.+. ++.+. .-+..||.+|+ +|-.|+.+|..
T Consensus 14 ~~~~C~~C~~~I~-~~~v~---a~~~~~H~~CF--------~C~~C~~~L~~ 53 (79)
T 2cor_A 14 GKYICQKCHAIID-EQPLI---FKNDPYHPDHF--------NCANCGKELTA 53 (79)
T ss_dssp CCCBCTTTCCBCC-SCCCC---CSSSCCCTTTS--------BCSSSCCBCCT
T ss_pred CCCCCccCCCEec-ceEEE---ECcceeCCCCC--------EeCCCCCccCC
Confidence 3468999988877 33332 25678887764 57888777754
No 168
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=23.99 E-value=9.3 Score=24.45 Aligned_cols=41 Identities=27% Similarity=0.616 Sum_probs=27.0
Q ss_pred ccccccccCceeeeeCCCCCccChHhHHHHH---hcCCCCCCcCC
Q 044271 316 ICLSEFLSQETIRCIPECKHCFHAECIDEWL---RLNDKCPVCRN 357 (369)
Q Consensus 316 ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl---~~~~~CP~Cr~ 357 (369)
||-.....+..|.-- .|+.=||..|+..=- ..+..||.|+.
T Consensus 8 ~C~~~~~~~~MI~Cd-~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFAGRPMIECN-ECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCTTCCEEECT-TTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCCCCCEEEcC-CCCccccccccCCCcccCCCcEECcCCCC
Confidence 677766544555544 489999999987422 23456888865
No 169
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=23.50 E-value=38 Score=28.98 Aligned_cols=35 Identities=17% Similarity=0.460 Sum_probs=27.9
Q ss_pred cccccccccccccCceeeeeCCCCCccChHhHHHH
Q 044271 311 SSACPICLSEFLSQETIRCIPECKHCFHAECIDEW 345 (369)
Q Consensus 311 ~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~w 345 (369)
+..|.+|-.+|..-..-.....||++|...|-...
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 57999999999876555555679999999997754
No 170
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=23.35 E-value=42 Score=27.01 Aligned_cols=34 Identities=9% Similarity=0.142 Sum_probs=13.3
Q ss_pred ccccccccccccCceeeeeCCCCCccChHhHHHHH
Q 044271 312 SACPICLSEFLSQETIRCIPECKHCFHAECIDEWL 346 (369)
Q Consensus 312 ~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl 346 (369)
..|..|-..+..++..-... =+.+|...|....+
T Consensus 94 F~C~~C~~~L~~g~~f~~~~-~g~~~C~~c~~~~~ 127 (169)
T 2rgt_A 94 FACVVCKRQLATGDEFYLME-DSRLVCKADYETAK 127 (169)
T ss_dssp CBCTTTCCBCCTTCEEEECT-TSCEEEHHHHHHHH
T ss_pred CcCCCCCCCCCCCCceEEcc-CCeEECHHHHHHHh
Confidence 34444444444333321111 23444444444433
No 171
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=23.11 E-value=25 Score=23.14 Aligned_cols=39 Identities=15% Similarity=0.367 Sum_probs=27.7
Q ss_pred cccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcC
Q 044271 311 SSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATP 361 (369)
Q Consensus 311 ~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~ 361 (369)
...|+.|-+.+. ++.+. .-+..||.+|+ .|-.|+.+|..
T Consensus 5 ~~~C~~C~~~I~-~~~~~---a~~~~~H~~CF--------~C~~C~~~L~~ 43 (66)
T 1nyp_A 5 VPICGACRRPIE-GRVVN---AMGKQWHVEHF--------VCAKCEKPFLG 43 (66)
T ss_dssp CCEETTTTEECC-SCEEC---CTTSBEETTTC--------BCTTTCCBCSS
T ss_pred CCCCcccCCEec-ceEEE---ECccccccCcC--------EECCCCCCCCC
Confidence 468999999887 44332 25788998774 48888887754
No 172
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=21.67 E-value=44 Score=26.09 Aligned_cols=35 Identities=14% Similarity=0.292 Sum_probs=25.7
Q ss_pred CCcccccccccccc-cCceeeeeCCCCCccChHhHH
Q 044271 309 PNSSACPICLSEFL-SQETIRCIPECKHCFHAECID 343 (369)
Q Consensus 309 ~~~~~C~ICL~~~~-~~~~~~~l~~C~H~fH~~Ci~ 343 (369)
..+..|++|...|. .+..-+....|.|-+...|-.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 56789999999994 334445555689988888754
No 173
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.14 E-value=41 Score=23.18 Aligned_cols=41 Identities=20% Similarity=0.446 Sum_probs=26.6
Q ss_pred cccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcC
Q 044271 311 SSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATP 361 (369)
Q Consensus 311 ~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~ 361 (369)
...|+.|-+.+..++.+... -+..||.+|+ +|-.|+.+|..
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~ 55 (82)
T 2ehe_A 15 ANTCAECQQLIGHDSRELFY--EDRHFHEGCF--------RCCRCQRSLAD 55 (82)
T ss_dssp SCBCTTTCCBCCSSCCBCCC--SSCCCBTTTS--------BCTTTCCBCSS
T ss_pred CCcCccCCCccccCcEEEEe--CCccccccCC--------eecCCCCccCC
Confidence 35799999888743333221 4688887774 37777777653
No 174
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=20.44 E-value=25 Score=19.52 Aligned_cols=12 Identities=33% Similarity=0.739 Sum_probs=8.4
Q ss_pred CCCCCCcCCCCc
Q 044271 349 NDKCPVCRNSAT 360 (369)
Q Consensus 349 ~~~CP~Cr~~~~ 360 (369)
+..||+|+..+.
T Consensus 3 k~~CpvCk~q~P 14 (28)
T 2jvx_A 3 DFCCPKCQYQAP 14 (28)
T ss_dssp CEECTTSSCEES
T ss_pred cccCccccccCc
Confidence 356999987543
Done!