Query 044272
Match_columns 133
No_of_seqs 121 out of 1384
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 13:03:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044272.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044272hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1225 Bcp Peroxiredoxin [Pos 100.0 2.8E-37 6.1E-42 199.2 14.4 132 1-133 1-133 (157)
2 PRK09437 bcp thioredoxin-depen 100.0 3.2E-31 7E-36 173.1 14.4 132 1-133 1-133 (154)
3 PF00578 AhpC-TSA: AhpC/TSA fa 100.0 2.4E-31 5.2E-36 167.6 12.6 121 6-133 1-122 (124)
4 cd03018 PRX_AhpE_like Peroxire 100.0 3.9E-30 8.5E-35 166.9 13.5 123 4-133 1-127 (149)
5 PRK13190 putative peroxiredoxi 100.0 6E-30 1.3E-34 173.8 13.6 123 4-133 2-130 (202)
6 PRK13189 peroxiredoxin; Provis 100.0 9.8E-30 2.1E-34 174.8 13.9 126 3-133 8-139 (222)
7 PRK10382 alkyl hydroperoxide r 100.0 1.3E-29 2.8E-34 169.9 13.7 123 4-133 2-132 (187)
8 PRK13599 putative peroxiredoxi 100.0 1.4E-29 3E-34 173.1 13.7 123 5-133 3-132 (215)
9 PRK13191 putative peroxiredoxi 100.0 1.3E-29 2.8E-34 173.3 13.5 124 4-133 7-137 (215)
10 cd03016 PRX_1cys Peroxiredoxin 100.0 2E-29 4.3E-34 171.4 13.9 124 6-133 1-130 (203)
11 TIGR03137 AhpC peroxiredoxin. 100.0 1.8E-29 4E-34 169.7 13.3 122 5-133 3-132 (187)
12 cd03017 PRX_BCP Peroxiredoxin 100.0 3.9E-29 8.4E-34 160.6 13.0 122 8-133 1-123 (140)
13 cd03014 PRX_Atyp2cys Peroxired 100.0 3.3E-29 7.3E-34 161.7 12.7 120 5-133 1-123 (143)
14 PTZ00137 2-Cys peroxiredoxin; 100.0 7E-29 1.5E-33 173.1 13.6 123 4-133 68-201 (261)
15 PF08534 Redoxin: Redoxin; In 100.0 6E-29 1.3E-33 160.9 12.1 125 5-133 1-128 (146)
16 cd03015 PRX_Typ2cys Peroxiredo 100.0 1.2E-28 2.5E-33 163.9 13.6 121 6-133 1-133 (173)
17 cd02970 PRX_like2 Peroxiredoxi 100.0 8.3E-29 1.8E-33 160.4 12.5 125 9-133 1-143 (149)
18 cd03013 PRX5_like Peroxiredoxi 100.0 1.2E-28 2.5E-33 161.2 12.8 126 6-133 1-134 (155)
19 PRK00522 tpx lipid hydroperoxi 100.0 2.9E-28 6.2E-33 161.2 13.0 124 4-133 18-144 (167)
20 cd02971 PRX_family Peroxiredox 100.0 5.3E-28 1.2E-32 155.2 13.5 121 9-133 1-123 (140)
21 PTZ00253 tryparedoxin peroxida 100.0 4E-28 8.6E-33 164.6 13.5 126 1-133 3-140 (199)
22 PRK15000 peroxidase; Provision 100.0 4.8E-28 1E-32 164.1 13.7 123 5-133 3-138 (200)
23 COG0450 AhpC Peroxiredoxin [Po 100.0 1.2E-27 2.6E-32 157.8 12.6 123 4-133 3-137 (194)
24 cd02969 PRX_like1 Peroxiredoxi 99.9 4.4E-26 9.5E-31 151.2 12.1 114 7-133 1-123 (171)
25 cd00340 GSH_Peroxidase Glutath 99.9 3.9E-26 8.5E-31 148.9 8.0 122 9-133 1-136 (152)
26 PTZ00056 glutathione peroxidas 99.9 2.9E-25 6.2E-30 150.5 12.5 126 5-133 14-158 (199)
27 PRK03147 thiol-disulfide oxido 99.9 8.5E-25 1.8E-29 145.0 13.2 117 3-133 34-152 (173)
28 cd03012 TlpA_like_DipZ_like Tl 99.9 3.9E-25 8.4E-30 140.0 10.2 99 21-133 15-119 (126)
29 PLN02412 probable glutathione 99.9 4E-25 8.7E-30 146.2 10.6 126 6-133 5-144 (167)
30 PLN02399 phospholipid hydroper 99.9 8.4E-25 1.8E-29 150.9 11.2 127 5-133 74-214 (236)
31 TIGR02661 MauD methylamine deh 99.9 2E-24 4.4E-29 145.4 12.8 113 3-133 45-160 (189)
32 cd02968 SCO SCO (an acronym fo 99.9 2E-24 4.4E-29 138.9 11.3 123 9-133 1-137 (142)
33 PTZ00256 glutathione peroxidas 99.9 3.3E-24 7.2E-29 143.7 12.7 128 5-133 15-161 (183)
34 PRK15412 thiol:disulfide inter 99.9 1.8E-24 3.9E-29 145.2 11.3 113 4-133 39-156 (185)
35 TIGR00385 dsbE periplasmic pro 99.9 6E-24 1.3E-28 141.3 11.0 114 3-133 33-151 (173)
36 TIGR02540 gpx7 putative glutat 99.9 4E-24 8.7E-29 139.5 9.9 113 10-133 2-133 (153)
37 cd02967 mauD Methylamine utili 99.9 1.7E-23 3.8E-28 130.0 12.2 107 11-133 1-109 (114)
38 cd03010 TlpA_like_DsbE TlpA-li 99.9 1.1E-23 2.4E-28 133.4 11.2 108 9-133 2-114 (127)
39 cd03008 TryX_like_RdCVF Trypar 99.9 9.1E-23 2E-27 131.5 10.2 98 22-133 18-126 (146)
40 KOG0854 Alkyl hydroperoxide re 99.9 1.5E-22 3.3E-27 131.2 11.0 133 1-133 3-144 (224)
41 KOG0855 Alkyl hydroperoxide re 99.9 1.3E-22 2.9E-27 130.3 9.7 123 4-131 63-186 (211)
42 cd02966 TlpA_like_family TlpA- 99.9 3.6E-22 7.8E-27 123.0 10.8 108 12-133 1-111 (116)
43 cd03011 TlpA_like_ScsD_MtbDsbE 99.9 2.3E-21 5E-26 121.9 10.7 102 11-132 1-105 (123)
44 PRK14018 trifunctional thiored 99.9 2.9E-21 6.2E-26 145.7 12.6 114 4-133 32-153 (521)
45 KOG0852 Alkyl hydroperoxide re 99.9 2.9E-21 6.3E-26 125.0 10.2 124 3-133 3-137 (196)
46 cd03009 TryX_like_TryX_NRX Try 99.9 2E-21 4.4E-26 123.6 9.3 105 15-133 3-113 (131)
47 cd02964 TryX_like_family Trypa 99.9 8.2E-21 1.8E-25 121.1 11.0 100 19-133 7-113 (132)
48 PLN02919 haloacid dehalogenase 99.8 2.9E-20 6.2E-25 150.7 11.3 116 4-133 391-516 (1057)
49 PF02630 SCO1-SenC: SCO1/SenC; 99.8 7.4E-20 1.6E-24 121.7 11.0 127 6-133 28-168 (174)
50 PF13905 Thioredoxin_8: Thiore 99.8 1.3E-19 2.9E-24 109.1 8.2 90 30-132 1-95 (95)
51 TIGR01626 ytfJ_HI0045 conserve 99.8 3.9E-19 8.5E-24 118.4 10.2 112 4-133 23-160 (184)
52 PRK10606 btuE putative glutath 99.8 1.6E-18 3.4E-23 115.9 12.0 84 8-94 3-96 (183)
53 COG2077 Tpx Peroxiredoxin [Pos 99.8 3.3E-18 7.2E-23 108.5 10.8 125 3-133 17-144 (158)
54 PRK13728 conjugal transfer pro 99.8 1.7E-18 3.7E-23 114.8 8.5 97 6-132 51-149 (181)
55 COG0678 AHP1 Peroxiredoxin [Po 99.7 9E-16 2E-20 97.3 9.9 127 4-132 3-141 (165)
56 COG1999 Uncharacterized protei 99.7 1.6E-15 3.4E-20 103.4 10.5 124 9-133 45-184 (207)
57 KOG2501 Thioredoxin, nucleored 99.6 3.3E-15 7.2E-20 96.2 7.5 107 13-132 15-128 (157)
58 KOG0541 Alkyl hydroperoxide re 99.6 7.5E-15 1.6E-19 93.7 7.7 130 1-132 6-147 (171)
59 TIGR02738 TrbB type-F conjugat 99.6 1E-14 2.2E-19 95.0 6.6 82 21-132 46-131 (153)
60 KOG2792 Putative cytochrome C 99.5 1.3E-13 2.9E-18 94.6 9.7 122 11-133 120-255 (280)
61 cd02950 TxlA TRX-like protein 99.4 4.6E-13 9.9E-18 86.4 6.1 86 15-133 3-90 (142)
62 TIGR02740 TraF-like TraF-like 99.4 2E-12 4.2E-17 91.5 6.3 83 21-130 158-240 (271)
63 PF05988 DUF899: Bacterial pro 99.3 4.2E-11 9.1E-16 80.7 10.9 123 4-132 40-168 (211)
64 cd02985 TRX_CDSP32 TRX family, 99.3 1.7E-11 3.7E-16 74.9 8.0 70 29-132 14-83 (103)
65 cd02999 PDI_a_ERp44_like PDIa 99.2 8.1E-11 1.8E-15 71.5 8.0 69 25-129 14-82 (100)
66 cd02951 SoxW SoxW family; SoxW 99.2 4.3E-11 9.4E-16 75.4 6.2 82 29-132 12-98 (125)
67 cd02963 TRX_DnaJ TRX domain, D 99.1 3.5E-10 7.6E-15 70.0 7.9 69 29-132 23-91 (111)
68 PF13098 Thioredoxin_2: Thiore 99.1 9.1E-11 2E-15 72.4 5.1 88 29-132 4-95 (112)
69 COG0386 BtuE Glutathione perox 99.1 2.1E-09 4.6E-14 68.9 10.3 121 9-133 4-140 (162)
70 cd02956 ybbN ybbN protein fami 99.1 5.8E-10 1.3E-14 66.9 7.3 68 29-132 11-78 (96)
71 cd02953 DsbDgamma DsbD gamma f 99.1 1.1E-09 2.4E-14 66.7 7.9 73 29-132 10-86 (104)
72 cd02948 TRX_NDPK TRX domain, T 99.1 1.1E-09 2.3E-14 66.8 7.3 44 29-73 16-59 (102)
73 cd02954 DIM1 Dim1 family; Dim1 99.0 2.8E-09 6E-14 66.0 7.3 42 30-73 14-55 (114)
74 cd03002 PDI_a_MPD1_like PDI fa 99.0 3.7E-09 7.9E-14 64.8 7.4 69 29-130 17-85 (109)
75 cd02994 PDI_a_TMX PDIa family, 99.0 4.6E-09 9.9E-14 63.6 7.3 68 29-132 16-83 (101)
76 PF00255 GSHPx: Glutathione pe 99.0 1.3E-08 2.8E-13 62.5 9.2 79 12-93 3-91 (108)
77 PRK09381 trxA thioredoxin; Pro 99.0 3.8E-09 8.2E-14 64.9 6.9 68 29-132 20-87 (109)
78 COG4312 Uncharacterized protei 99.0 1.4E-08 3.1E-13 68.6 10.0 122 11-132 53-193 (247)
79 cd02993 PDI_a_APS_reductase PD 98.9 8.2E-09 1.8E-13 63.5 8.0 45 29-74 20-64 (109)
80 cd03000 PDI_a_TMX3 PDIa family 98.9 6.7E-09 1.5E-13 63.3 7.2 65 29-127 14-80 (104)
81 cd02959 ERp19 Endoplasmic reti 98.9 5.4E-09 1.2E-13 65.3 6.8 43 29-73 18-60 (117)
82 cd03003 PDI_a_ERdj5_N PDIa fam 98.9 1.2E-08 2.6E-13 61.8 8.1 44 29-74 17-60 (101)
83 cd02952 TRP14_like Human TRX-r 98.9 7.2E-09 1.6E-13 64.8 6.7 77 29-132 20-103 (119)
84 KOG1651 Glutathione peroxidase 98.9 3E-08 6.4E-13 64.4 9.4 122 7-133 11-149 (171)
85 PF13911 AhpC-TSA_2: AhpC/TSA 98.9 2E-08 4.4E-13 62.4 8.3 81 53-133 2-108 (115)
86 cd03004 PDI_a_ERdj5_C PDIa fam 98.9 2.2E-08 4.7E-13 60.9 8.3 43 29-73 18-60 (104)
87 cd03005 PDI_a_ERp46 PDIa famil 98.9 1.1E-08 2.5E-13 61.7 6.5 65 32-131 18-84 (102)
88 cd02996 PDI_a_ERp44 PDIa famil 98.8 3.6E-08 7.9E-13 60.4 8.5 68 29-131 17-89 (108)
89 PRK10996 thioredoxin 2; Provis 98.8 2.6E-08 5.6E-13 64.0 7.7 68 29-132 51-118 (139)
90 cd02949 TRX_NTR TRX domain, no 98.8 2.9E-08 6.3E-13 59.8 7.4 68 29-132 12-79 (97)
91 cd02962 TMX2 TMX2 family; comp 98.8 2.8E-08 6.2E-13 64.7 7.4 45 30-75 47-91 (152)
92 PTZ00051 thioredoxin; Provisio 98.8 3.9E-08 8.4E-13 59.1 7.3 66 30-132 18-83 (98)
93 cd02984 TRX_PICOT TRX domain, 98.8 4.9E-08 1.1E-12 58.5 7.4 67 30-132 14-80 (97)
94 PF13728 TraF: F plasmid trans 98.8 5.9E-08 1.3E-12 66.7 8.3 82 22-130 113-194 (215)
95 TIGR01126 pdi_dom protein disu 98.8 5.5E-08 1.2E-12 58.5 7.3 69 29-131 12-81 (102)
96 PHA02278 thioredoxin-like prot 98.8 5.2E-08 1.1E-12 59.5 7.1 43 29-73 13-55 (103)
97 cd02997 PDI_a_PDIR PDIa family 98.7 8.5E-08 1.8E-12 58.0 7.7 71 29-132 16-87 (104)
98 KOG0910 Thioredoxin-like prote 98.7 3.7E-08 7.9E-13 63.3 6.1 43 29-73 60-102 (150)
99 cd02998 PDI_a_ERp38 PDIa famil 98.7 6.6E-08 1.4E-12 58.5 7.1 68 30-130 18-86 (105)
100 cd03006 PDI_a_EFP1_N PDIa fami 98.7 1E-07 2.2E-12 59.2 7.8 46 29-76 28-73 (113)
101 cd02961 PDI_a_family Protein D 98.7 1.2E-07 2.5E-12 56.6 7.8 68 29-130 14-82 (101)
102 KOG0907 Thioredoxin [Posttrans 98.7 7.3E-08 1.6E-12 59.1 6.5 43 29-74 20-62 (106)
103 PRK13703 conjugal pilus assemb 98.7 9.6E-08 2.1E-12 66.7 7.3 81 23-130 137-217 (248)
104 TIGR01295 PedC_BrcD bacterioci 98.7 1.4E-07 3E-12 59.3 7.3 41 29-73 22-62 (122)
105 TIGR02739 TraF type-F conjugat 98.7 1.5E-07 3.2E-12 66.1 7.7 81 23-130 144-224 (256)
106 TIGR01068 thioredoxin thioredo 98.7 1.5E-07 3.3E-12 56.4 6.9 65 31-131 15-79 (101)
107 PF00837 T4_deiodinase: Iodoth 98.6 1.6E-07 3.5E-12 64.7 7.3 113 4-132 73-213 (237)
108 cd02992 PDI_a_QSOX PDIa family 98.6 4.6E-07 1E-11 56.3 8.6 40 31-71 20-61 (114)
109 PF00085 Thioredoxin: Thioredo 98.6 4.1E-07 8.8E-12 54.7 7.8 42 30-73 17-58 (103)
110 cd02986 DLP Dim1 family, Dim1- 98.6 3.6E-07 7.7E-12 56.5 7.1 45 29-75 13-57 (114)
111 cd03001 PDI_a_P5 PDIa family, 98.6 6E-07 1.3E-11 54.2 7.8 42 30-73 18-59 (103)
112 PTZ00443 Thioredoxin domain-co 98.6 2.8E-07 6.1E-12 63.6 7.0 66 31-132 53-118 (224)
113 cd02957 Phd_like Phosducin (Ph 98.5 4.6E-07 1E-11 56.1 7.0 40 31-73 25-64 (113)
114 cd02975 PfPDO_like_N Pyrococcu 98.5 9.8E-07 2.1E-11 54.7 8.2 41 31-73 22-62 (113)
115 cd02965 HyaE HyaE family; HyaE 98.5 4.9E-07 1.1E-11 55.7 6.7 68 29-132 26-95 (111)
116 PRK00293 dipZ thiol:disulfide 98.5 3.7E-07 8E-12 71.0 7.5 72 29-132 473-547 (571)
117 cd02947 TRX_family TRX family; 98.5 9.8E-07 2.1E-11 51.5 7.2 41 31-74 11-51 (93)
118 cd02955 SSP411 TRX domain, SSP 98.5 1.7E-06 3.7E-11 54.5 8.4 77 29-133 14-94 (124)
119 cd02989 Phd_like_TxnDC9 Phosdu 98.5 1.1E-06 2.5E-11 54.4 7.4 43 29-74 21-63 (113)
120 COG3118 Thioredoxin domain-con 98.5 7E-07 1.5E-11 63.3 7.0 43 29-73 42-84 (304)
121 cd03065 PDI_b_Calsequestrin_N 98.5 9.3E-07 2E-11 55.4 6.6 70 29-132 25-99 (120)
122 TIGR00424 APS_reduc 5'-adenyly 98.4 2E-06 4.3E-11 65.1 8.3 45 29-74 370-414 (463)
123 TIGR00411 redox_disulf_1 small 98.4 2.2E-06 4.9E-11 49.6 6.6 38 35-73 3-40 (82)
124 PLN00410 U5 snRNP protein, DIM 98.3 1.5E-06 3.2E-11 55.9 5.7 46 29-76 22-67 (142)
125 cd02987 Phd_like_Phd Phosducin 98.3 3.4E-06 7.5E-11 56.2 7.0 39 32-73 85-123 (175)
126 PTZ00102 disulphide isomerase; 98.3 2E-06 4.4E-11 65.2 6.5 44 29-73 374-418 (477)
127 cd02995 PDI_a_PDI_a'_C PDIa fa 98.3 2.5E-06 5.4E-11 51.4 5.1 43 30-73 18-61 (104)
128 PTZ00102 disulphide isomerase; 98.3 4.6E-06 9.9E-11 63.3 7.6 43 29-72 48-92 (477)
129 cd01659 TRX_superfamily Thiore 98.3 7.6E-06 1.7E-10 43.9 6.6 43 37-81 3-45 (69)
130 KOG4498 Uncharacterized conser 98.2 3E-06 6.4E-11 56.3 5.5 116 17-132 36-172 (197)
131 PTZ00062 glutaredoxin; Provisi 98.2 6.8E-06 1.5E-10 56.0 6.0 39 33-73 19-57 (204)
132 PLN02309 5'-adenylylsulfate re 98.2 1.4E-05 3E-10 60.6 8.2 44 29-73 364-407 (457)
133 cd02960 AGR Anterior Gradient 98.2 1.7E-05 3.7E-10 50.3 7.4 26 29-55 22-47 (130)
134 PF05176 ATP-synt_10: ATP10 pr 98.1 2.9E-05 6.4E-10 54.6 8.9 114 8-133 99-230 (252)
135 TIGR01130 ER_PDI_fam protein d 98.1 1.4E-05 3.1E-10 60.1 7.6 44 29-73 17-62 (462)
136 TIGR00412 redox_disulf_2 small 98.1 2.5E-05 5.5E-10 44.9 6.9 38 35-76 3-40 (76)
137 cd02988 Phd_like_VIAF Phosduci 98.0 2.3E-05 4.9E-10 53.0 6.6 40 31-73 103-142 (192)
138 TIGR02187 GlrX_arch Glutaredox 97.9 4.6E-05 1E-09 52.3 6.6 43 29-73 18-62 (215)
139 cd02958 UAS UAS family; UAS is 97.9 9.4E-05 2E-09 45.7 7.2 71 29-132 16-90 (114)
140 cd03026 AhpF_NTD_C TRX-GRX-lik 97.9 9.4E-05 2E-09 43.9 6.5 45 25-73 8-52 (89)
141 COG0526 TrxA Thiol-disulfide i 97.8 9.6E-05 2.1E-09 44.4 6.6 43 29-73 31-73 (127)
142 PF13899 Thioredoxin_7: Thiore 97.8 0.00027 5.9E-09 41.0 7.9 49 29-79 16-67 (82)
143 PF09695 YtfJ_HI0045: Bacteria 97.7 0.00079 1.7E-08 43.9 9.1 116 4-133 1-138 (160)
144 TIGR01130 ER_PDI_fam protein d 97.7 0.00012 2.6E-09 55.2 6.3 44 29-73 363-408 (462)
145 smart00594 UAS UAS domain. 97.5 0.00095 2.1E-08 41.8 7.8 69 29-130 26-97 (122)
146 PF04592 SelP_N: Selenoprotein 97.5 0.00086 1.9E-08 46.3 8.0 106 9-132 9-122 (238)
147 cd02973 TRX_GRX_like Thioredox 97.5 0.00026 5.7E-09 39.3 4.4 36 36-73 4-39 (67)
148 TIGR02187 GlrX_arch Glutaredox 97.5 0.00098 2.1E-08 45.8 7.8 41 31-73 133-173 (215)
149 cd02982 PDI_b'_family Protein 97.5 0.00035 7.7E-09 42.0 4.9 54 30-88 12-65 (103)
150 PF14595 Thioredoxin_9: Thiore 97.4 0.00034 7.4E-09 44.4 4.2 42 29-73 40-81 (129)
151 KOG0190 Protein disulfide isom 97.2 0.00052 1.1E-08 52.4 4.1 60 29-89 40-99 (493)
152 TIGR02196 GlrX_YruB Glutaredox 97.2 0.0043 9.4E-08 34.4 6.9 52 36-94 3-56 (74)
153 KOG0908 Thioredoxin-like prote 97.1 0.00059 1.3E-08 47.6 3.7 60 22-88 14-73 (288)
154 PF06110 DUF953: Eukaryotic pr 97.0 0.005 1.1E-07 38.5 6.4 46 29-75 18-69 (119)
155 TIGR02200 GlrX_actino Glutared 96.9 0.0051 1.1E-07 34.7 6.0 39 37-82 4-42 (77)
156 PF13778 DUF4174: Domain of un 96.9 0.0028 6.1E-08 39.5 5.1 89 24-132 3-91 (118)
157 KOG0190 Protein disulfide isom 96.9 0.0011 2.4E-08 50.7 3.8 34 29-63 383-416 (493)
158 PHA02125 thioredoxin-like prot 96.7 0.004 8.7E-08 35.5 4.3 20 36-55 3-22 (75)
159 PRK11657 dsbG disulfide isomer 96.4 0.015 3.2E-07 41.1 6.1 28 30-58 117-144 (251)
160 TIGR02190 GlrX-dom Glutaredoxi 96.1 0.039 8.6E-07 31.6 6.0 43 37-86 12-54 (79)
161 cd02976 NrdH NrdH-redoxin (Nrd 96.1 0.048 1E-06 30.0 6.3 52 36-94 3-56 (73)
162 PF00462 Glutaredoxin: Glutare 96.0 0.053 1.1E-06 29.2 6.0 38 37-81 3-40 (60)
163 TIGR02180 GRX_euk Glutaredoxin 96.0 0.045 9.8E-07 31.3 6.0 42 37-81 3-45 (84)
164 KOG3425 Uncharacterized conser 95.9 0.018 3.8E-07 35.9 4.0 51 22-73 17-74 (128)
165 PRK11509 hydrogenase-1 operon 95.8 0.053 1.2E-06 34.5 6.0 26 94-132 78-103 (132)
166 PRK11200 grxA glutaredoxin 1; 95.7 0.11 2.4E-06 30.1 6.8 36 36-73 4-39 (85)
167 cd03007 PDI_a_ERp29_N PDIa fam 95.6 0.045 9.7E-07 34.1 5.2 37 31-72 19-59 (116)
168 KOG0912 Thiol-disulfide isomer 95.6 0.017 3.8E-07 41.6 3.7 42 31-73 14-57 (375)
169 cd02979 PHOX_C FAD-dependent P 95.6 0.13 2.9E-06 34.0 7.7 112 7-132 1-148 (167)
170 TIGR02194 GlrX_NrdH Glutaredox 95.6 0.07 1.5E-06 29.9 5.6 51 37-94 3-54 (72)
171 cd02066 GRX_family Glutaredoxi 95.5 0.11 2.4E-06 28.3 6.3 50 37-93 4-55 (72)
172 KOG0191 Thioredoxin/protein di 95.5 0.028 6E-07 42.0 4.6 48 29-78 46-93 (383)
173 PRK10329 glutaredoxin-like pro 95.3 0.16 3.5E-06 29.4 6.5 51 37-94 5-56 (81)
174 PF07976 Phe_hydrox_dim: Pheno 95.2 0.061 1.3E-06 35.7 5.1 105 3-107 29-166 (169)
175 TIGR02181 GRX_bact Glutaredoxi 95.1 0.15 3.3E-06 28.9 6.0 45 36-87 2-47 (79)
176 TIGR02183 GRXA Glutaredoxin, G 95.1 0.17 3.8E-06 29.5 6.3 37 35-73 2-38 (86)
177 cd03029 GRX_hybridPRX5 Glutare 95.0 0.16 3.6E-06 28.3 6.0 31 37-74 5-35 (72)
178 cd03418 GRX_GRXb_1_3_like Glut 95.0 0.29 6.2E-06 27.3 7.0 45 36-87 3-48 (75)
179 TIGR00365 monothiol glutaredox 95.0 0.17 3.6E-06 30.4 6.2 38 29-73 10-50 (97)
180 PHA03050 glutaredoxin; Provisi 94.9 0.24 5.3E-06 30.3 6.8 26 29-56 11-36 (108)
181 PRK10877 protein disulfide iso 94.9 0.27 5.8E-06 34.3 7.7 37 29-70 106-142 (232)
182 cd03419 GRX_GRXh_1_2_like Glut 94.8 0.13 2.8E-06 29.2 5.3 34 36-74 3-36 (82)
183 PF11009 DUF2847: Protein of u 94.8 0.16 3.5E-06 31.0 5.7 70 33-132 21-90 (105)
184 cd03028 GRX_PICOT_like Glutare 94.8 0.23 5E-06 29.2 6.3 28 29-56 6-36 (90)
185 COG4232 Thiol:disulfide interc 94.5 0.059 1.3E-06 42.1 4.0 38 29-67 473-511 (569)
186 COG2143 Thioredoxin-related pr 94.3 0.23 5.1E-06 32.6 5.9 85 29-132 41-128 (182)
187 cd03027 GRX_DEP Glutaredoxin ( 94.2 0.35 7.5E-06 27.0 6.0 42 38-86 6-48 (73)
188 PRK10638 glutaredoxin 3; Provi 94.2 0.34 7.4E-06 27.9 6.1 49 37-92 6-56 (83)
189 PRK06183 mhpA 3-(3-hydroxyphen 94.2 0.43 9.3E-06 37.2 8.3 101 4-132 411-512 (538)
190 PF13462 Thioredoxin_4: Thiore 94.1 0.26 5.6E-06 31.7 5.9 49 22-72 5-54 (162)
191 cd03023 DsbA_Com1_like DsbA fa 94.0 0.088 1.9E-06 33.4 3.6 36 33-70 7-42 (154)
192 PF03190 Thioredox_DsbH: Prote 93.9 0.27 5.9E-06 32.5 5.8 22 29-51 36-57 (163)
193 KOG0191 Thioredoxin/protein di 93.8 0.12 2.5E-06 38.7 4.4 51 32-83 164-215 (383)
194 COG0695 GrxC Glutaredoxin and 93.8 0.38 8.2E-06 27.8 5.6 50 38-94 6-59 (80)
195 PRK08294 phenol 2-monooxygenas 93.6 0.51 1.1E-05 37.8 7.8 119 3-132 462-611 (634)
196 PRK06184 hypothetical protein; 93.5 0.57 1.2E-05 36.2 7.8 88 4-132 386-475 (502)
197 cd02972 DsbA_family DsbA famil 93.5 0.32 7E-06 28.0 5.2 34 37-71 3-36 (98)
198 cd02991 UAS_ETEA UAS family, E 93.4 0.6 1.3E-05 29.0 6.5 43 29-76 16-64 (116)
199 TIGR02189 GlrX-like_plant Glut 93.3 0.19 4.1E-06 30.3 4.0 26 29-56 6-31 (99)
200 PRK08132 FAD-dependent oxidore 92.5 0.81 1.8E-05 35.8 7.4 98 4-132 427-525 (547)
201 PF05768 DUF836: Glutaredoxin- 92.4 0.76 1.6E-05 26.4 5.5 56 35-96 2-57 (81)
202 KOG1731 FAD-dependent sulfhydr 92.0 0.21 4.6E-06 39.0 3.5 30 32-62 59-88 (606)
203 cd03019 DsbA_DsbA DsbA family, 91.6 0.4 8.6E-06 31.4 4.2 38 29-68 14-51 (178)
204 cd03032 ArsC_Spx Arsenate Redu 91.5 0.97 2.1E-05 27.8 5.6 64 36-106 3-70 (115)
205 PRK10824 glutaredoxin-4; Provi 91.3 0.79 1.7E-05 28.5 5.0 27 29-56 13-43 (115)
206 PRK01655 spxA transcriptional 91.2 0.81 1.7E-05 29.0 5.1 65 35-106 2-70 (131)
207 cd02977 ArsC_family Arsenate R 91.0 0.75 1.6E-05 27.7 4.7 63 36-105 2-68 (105)
208 cd03036 ArsC_like Arsenate Red 90.8 0.83 1.8E-05 28.0 4.8 61 37-105 3-68 (111)
209 TIGR03143 AhpF_homolog putativ 90.2 1.5 3.3E-05 34.5 6.9 39 31-71 476-514 (555)
210 PTZ00062 glutaredoxin; Provisi 89.9 1.5 3.2E-05 30.1 5.9 52 24-82 106-160 (204)
211 TIGR01617 arsC_related transcr 89.7 1.2 2.6E-05 27.5 4.9 61 37-105 3-68 (117)
212 COG2179 Predicted hydrolase of 89.6 1.1 2.3E-05 29.8 4.7 42 48-89 46-87 (175)
213 cd03020 DsbA_DsbC_DsbG DsbA fa 89.5 0.8 1.7E-05 30.9 4.3 25 30-55 77-101 (197)
214 TIGR00995 3a0901s06TIC22 chlor 88.8 3.9 8.5E-05 29.3 7.4 90 8-106 80-170 (270)
215 PF13192 Thioredoxin_3: Thiore 88.8 2.9 6.2E-05 23.6 5.8 21 40-60 7-27 (76)
216 KOG4277 Uncharacterized conser 88.5 0.25 5.5E-06 35.9 1.3 33 33-66 46-78 (468)
217 PF08235 LNS2: LNS2 (Lipin/Ned 88.4 3.2 7E-05 27.3 6.3 73 15-96 3-84 (157)
218 PRK10954 periplasmic protein d 88.3 0.87 1.9E-05 31.0 3.9 45 22-68 29-76 (207)
219 PF06764 DUF1223: Protein of u 87.1 1.5 3.2E-05 30.0 4.4 37 34-73 1-37 (202)
220 PRK12559 transcriptional regul 86.6 1.6 3.5E-05 27.6 4.1 64 36-106 3-70 (131)
221 cd03035 ArsC_Yffb Arsenate Red 85.1 4.6 0.0001 24.5 5.5 61 36-105 2-66 (105)
222 KOG2116 Protein involved in pl 84.5 3.5 7.6E-05 33.2 5.7 75 16-99 535-618 (738)
223 PRK12759 bifunctional gluaredo 84.3 2.9 6.4E-05 31.7 5.2 31 37-74 6-36 (410)
224 PRK13344 spxA transcriptional 83.9 6.6 0.00014 24.9 6.0 61 37-105 4-69 (132)
225 TIGR03759 conj_TIGR03759 integ 83.5 3.1 6.6E-05 28.4 4.5 51 33-89 111-162 (200)
226 PF06053 DUF929: Domain of unk 82.8 2.4 5.1E-05 30.1 3.9 40 22-61 49-88 (249)
227 cd03060 GST_N_Omega_like GST_N 82.8 3.8 8.3E-05 22.5 4.2 52 37-95 3-55 (71)
228 PF01323 DSBA: DSBA-like thior 82.5 5.8 0.00013 26.1 5.6 41 35-75 2-42 (193)
229 PHA03075 glutaredoxin-like pro 80.4 2.1 4.7E-05 26.6 2.6 38 32-70 3-40 (123)
230 COG0552 FtsY Signal recognitio 77.4 7.7 0.00017 28.8 5.1 90 29-132 136-233 (340)
231 KOG1752 Glutaredoxin and relat 76.7 13 0.00029 22.6 5.3 48 29-85 12-62 (104)
232 COG1651 DsbG Protein-disulfide 75.3 9.2 0.0002 26.5 5.0 30 31-61 85-114 (244)
233 PF04278 Tic22: Tic22-like fam 75.0 6.6 0.00014 28.2 4.2 84 9-96 74-161 (274)
234 PF08821 CGGC: CGGC domain; I 74.9 14 0.00031 22.6 5.2 47 21-72 27-73 (107)
235 KOG0911 Glutaredoxin-related p 74.6 3.2 6.9E-05 28.9 2.4 53 29-84 16-69 (227)
236 PF02114 Phosducin: Phosducin; 74.0 11 0.00024 26.9 5.2 40 32-73 147-186 (265)
237 COG1393 ArsC Arsenate reductas 73.8 6.9 0.00015 24.3 3.6 64 35-105 3-70 (117)
238 KOG0914 Thioredoxin-like prote 73.6 2.3 5E-05 29.6 1.6 36 32-67 145-180 (265)
239 KOG0913 Thiol-disulfide isomer 73.3 0.71 1.5E-05 32.3 -0.9 40 25-66 35-74 (248)
240 PRK13738 conjugal transfer pil 72.8 16 0.00035 25.2 5.5 44 64-125 146-189 (209)
241 COG1419 FlhF Flagellar GTP-bin 71.6 16 0.00034 27.9 5.6 72 46-131 216-292 (407)
242 COG5429 Uncharacterized secret 71.4 6.9 0.00015 27.6 3.5 36 32-72 42-77 (261)
243 PRK15317 alkyl hydroperoxide r 70.5 15 0.00033 28.7 5.7 38 31-70 116-153 (517)
244 PF00875 DNA_photolyase: DNA p 69.4 13 0.00029 24.1 4.5 41 49-89 51-91 (165)
245 COG3054 Predicted transcriptio 69.1 11 0.00023 24.8 3.8 115 4-132 23-159 (184)
246 PF01106 NifU: NifU-like domai 68.1 13 0.00029 20.6 3.7 32 19-53 16-47 (68)
247 cd01427 HAD_like Haloacid deha 67.2 15 0.00033 21.9 4.3 40 48-87 24-63 (139)
248 KOG2741 Dimeric dihydrodiol de 66.5 16 0.00034 27.3 4.7 57 46-102 14-70 (351)
249 cd03025 DsbA_FrnE_like DsbA fa 65.4 7.9 0.00017 25.6 2.9 26 35-60 3-28 (193)
250 cd03034 ArsC_ArsC Arsenate Red 65.0 23 0.00049 21.6 4.6 62 37-105 3-68 (112)
251 TIGR02743 TraW type-F conjugat 63.2 27 0.00059 24.0 5.1 44 64-125 148-191 (202)
252 cd03059 GST_N_SspA GST_N famil 61.8 24 0.00051 19.0 4.2 19 38-56 4-22 (73)
253 PF00702 Hydrolase: haloacid d 61.6 17 0.00038 24.0 4.0 56 50-105 129-193 (215)
254 COG0694 Thioredoxin-like prote 60.9 34 0.00073 20.5 5.2 36 19-55 29-65 (93)
255 COG0821 gcpE 1-hydroxy-2-methy 60.3 69 0.0015 24.0 6.9 64 29-96 18-82 (361)
256 cd05017 SIS_PGI_PMI_1 The memb 60.2 32 0.0007 20.9 4.8 30 56-87 62-91 (119)
257 PF04134 DUF393: Protein of un 58.1 12 0.00026 22.6 2.5 32 37-72 2-33 (114)
258 TIGR03765 ICE_PFL_4695 integra 56.7 44 0.00094 20.5 6.9 64 37-105 28-91 (105)
259 TIGR01490 HAD-SF-IB-hyp1 HAD-s 56.7 39 0.00085 22.3 5.1 40 50-89 89-128 (202)
260 TIGR00014 arsC arsenate reduct 56.4 44 0.00095 20.4 5.6 61 37-105 3-69 (114)
261 PLN03098 LPA1 LOW PSII ACCUMUL 56.3 21 0.00046 27.6 4.0 64 7-73 273-337 (453)
262 TIGR01662 HAD-SF-IIIA HAD-supe 56.3 30 0.00065 21.3 4.2 40 50-89 27-74 (132)
263 PF13419 HAD_2: Haloacid dehal 55.2 27 0.00057 22.0 4.0 38 51-88 80-117 (176)
264 COG3019 Predicted metal-bindin 55.1 56 0.0012 21.2 5.3 41 33-80 26-66 (149)
265 TIGR03140 AhpF alkyl hydropero 54.5 32 0.00069 26.9 4.8 29 31-59 117-145 (515)
266 PF15092 UPF0728: Uncharacteri 54.5 37 0.00081 20.0 3.9 46 31-76 5-50 (88)
267 PF12710 HAD: haloacid dehalog 54.4 20 0.00044 23.3 3.4 35 55-89 96-130 (192)
268 PF11072 DUF2859: Protein of u 54.3 57 0.0012 21.1 7.0 64 37-105 66-129 (142)
269 TIGR01668 YqeG_hyp_ppase HAD s 53.5 42 0.00091 22.0 4.7 40 48-87 43-83 (170)
270 cd03041 GST_N_2GST_N GST_N fam 53.5 38 0.00081 18.8 6.2 20 37-56 4-23 (77)
271 PF14427 Pput2613-deam: Pput_2 53.4 21 0.00046 22.0 2.9 44 10-55 42-90 (118)
272 smart00775 LNS2 LNS2 domain. T 53.3 60 0.0013 21.1 7.0 61 15-84 3-66 (157)
273 PRK10026 arsenate reductase; P 52.0 31 0.00066 22.3 3.7 62 36-105 5-71 (141)
274 COG0415 PhrB Deoxyribodipyrimi 51.2 41 0.00089 26.2 4.8 42 48-89 52-93 (461)
275 cd05013 SIS_RpiR RpiR-like pro 51.1 41 0.00088 20.4 4.2 30 52-81 75-104 (139)
276 PRK00366 ispG 4-hydroxy-3-meth 50.6 1.1E+02 0.0023 23.2 6.9 71 22-96 15-88 (360)
277 TIGR00612 ispG_gcpE 1-hydroxy- 50.6 1E+02 0.0023 23.0 7.1 64 29-96 16-80 (346)
278 cd05008 SIS_GlmS_GlmD_1 SIS (S 50.5 19 0.00042 21.9 2.6 30 52-81 61-90 (126)
279 KOG4172 Predicted E3 ubiquitin 50.5 12 0.00026 20.1 1.3 17 41-57 44-60 (62)
280 cd03033 ArsC_15kD Arsenate Red 50.5 57 0.0012 20.0 5.7 44 37-87 4-51 (113)
281 TIGR01488 HAD-SF-IB Haloacid D 50.3 43 0.00093 21.5 4.4 38 51-88 76-113 (177)
282 cd03040 GST_N_mPGES2 GST_N fam 49.0 26 0.00056 19.2 2.8 19 38-56 5-23 (77)
283 cd05014 SIS_Kpsf KpsF-like pro 48.8 16 0.00034 22.4 2.0 30 52-81 62-91 (128)
284 COG0560 SerB Phosphoserine pho 48.5 44 0.00095 22.9 4.3 43 47-89 76-118 (212)
285 PF10453 NUFIP1: Nuclear fragi 48.1 20 0.00043 19.3 2.0 25 69-93 14-38 (56)
286 COG3769 Predicted hydrolase (H 47.8 41 0.00088 23.8 3.9 40 57-96 32-72 (274)
287 TIGR02652 conserved hypothetic 47.2 6.6 0.00014 25.3 0.1 19 36-54 5-23 (163)
288 PF10673 DUF2487: Protein of u 46.1 61 0.0013 21.0 4.4 25 51-75 71-96 (142)
289 PRK05370 argininosuccinate syn 45.6 66 0.0014 25.0 5.1 71 23-103 4-81 (447)
290 TIGR01512 ATPase-IB2_Cd heavy 45.6 54 0.0012 25.9 4.9 41 49-89 363-404 (536)
291 PRK01122 potassium-transportin 45.4 54 0.0012 26.9 4.9 37 52-88 449-485 (679)
292 COG3011 Predicted thiol-disulf 45.1 60 0.0013 20.9 4.2 38 32-73 8-45 (137)
293 cd00570 GST_N_family Glutathio 44.9 44 0.00096 17.1 4.5 19 38-56 4-22 (71)
294 PF09673 TrbC_Ftype: Type-F co 44.8 73 0.0016 19.5 6.2 63 52-128 12-80 (113)
295 cd03031 GRX_GRX_like Glutaredo 44.7 86 0.0019 20.3 5.4 15 42-56 15-29 (147)
296 TIGR00559 pdxJ pyridoxine 5'-p 44.6 54 0.0012 23.2 4.2 44 45-89 104-147 (237)
297 PRK00771 signal recognition pa 44.3 1.5E+02 0.0032 23.0 7.4 55 31-89 94-153 (437)
298 TIGR01449 PGP_bact 2-phosphogl 43.8 51 0.0011 21.9 4.1 38 51-88 88-125 (213)
299 PF03740 PdxJ: Pyridoxal phosp 43.8 53 0.0012 23.2 4.1 43 46-89 106-148 (239)
300 PF08394 Arc_trans_TRASH: Arch 43.6 21 0.00046 17.4 1.6 11 42-52 25-35 (37)
301 cd03037 GST_N_GRX2 GST_N famil 43.6 53 0.0011 17.6 4.9 17 40-56 6-22 (71)
302 PRK14010 potassium-transportin 43.5 63 0.0014 26.5 5.0 36 53-88 446-481 (673)
303 PRK04011 peptide chain release 43.3 39 0.00084 25.9 3.7 26 51-76 367-392 (411)
304 KOG2507 Ubiquitin regulatory p 43.3 64 0.0014 25.0 4.6 14 118-131 76-89 (506)
305 PF09654 DUF2396: Protein of u 42.9 7.5 0.00016 25.0 -0.1 18 37-54 3-20 (161)
306 COG0409 HypD Hydrogenase matur 42.6 22 0.00047 26.4 2.1 45 23-70 47-91 (364)
307 PRK06126 hypothetical protein; 42.5 1.3E+02 0.0027 23.7 6.5 30 5-37 447-476 (545)
308 TIGR00338 serB phosphoserine p 42.4 59 0.0013 21.8 4.2 39 51-89 88-126 (219)
309 cd03051 GST_N_GTT2_like GST_N 42.4 30 0.00065 18.5 2.4 20 37-56 3-22 (74)
310 COG4545 Glutaredoxin-related p 42.1 18 0.0004 20.8 1.3 21 40-60 9-29 (85)
311 TIGR01485 SPP_plant-cyano sucr 42.0 1.2E+02 0.0025 21.1 7.3 45 46-90 19-63 (249)
312 smart00734 ZnF_Rad18 Rad18-lik 41.9 12 0.00026 16.6 0.5 9 42-50 3-11 (26)
313 TIGR03499 FlhF flagellar biosy 41.7 1.3E+02 0.0028 21.6 6.4 53 65-130 225-282 (282)
314 cd01450 vWFA_subfamily_ECM Von 41.6 86 0.0019 19.5 5.8 31 52-82 120-152 (161)
315 TIGR01497 kdpB K+-transporting 41.5 73 0.0016 26.2 5.1 37 52-88 450-486 (675)
316 cd01452 VWA_26S_proteasome_sub 41.5 1.1E+02 0.0024 20.7 5.3 36 52-87 124-163 (187)
317 PF06491 Disulph_isomer: Disul 40.8 97 0.0021 19.9 5.2 13 119-132 95-107 (136)
318 TIGR01491 HAD-SF-IB-PSPlk HAD- 40.8 77 0.0017 20.8 4.5 38 51-88 83-120 (201)
319 PF03960 ArsC: ArsC family; I 40.7 81 0.0018 18.9 6.0 58 40-104 3-64 (110)
320 cd00003 PNPsynthase Pyridoxine 40.6 66 0.0014 22.7 4.2 43 46-89 105-147 (234)
321 PF13743 Thioredoxin_5: Thiore 40.5 18 0.00039 24.0 1.4 29 37-66 2-30 (176)
322 KOG0780 Signal recognition par 40.5 1.3E+02 0.0027 23.4 5.8 54 29-89 98-159 (483)
323 PF01740 STAS: STAS domain; I 40.4 81 0.0018 18.8 5.5 53 31-87 49-101 (117)
324 PRK05265 pyridoxine 5'-phospha 40.4 63 0.0014 22.9 4.0 44 45-89 107-150 (239)
325 PF12017 Tnp_P_element: Transp 40.3 1.3E+02 0.0028 21.2 5.6 24 51-74 196-219 (236)
326 TIGR03143 AhpF_homolog putativ 39.8 1.7E+02 0.0038 23.2 6.9 25 32-56 367-391 (555)
327 PF01924 HypD: Hydrogenase for 39.7 35 0.00076 25.6 2.8 36 35-70 49-84 (355)
328 PLN02954 phosphoserine phospha 39.7 75 0.0016 21.4 4.4 38 51-88 87-124 (224)
329 PLN02640 glucose-6-phosphate 1 39.1 1.8E+02 0.0038 23.6 6.7 68 6-73 61-130 (573)
330 cd05710 SIS_1 A subgroup of th 39.0 34 0.00073 21.0 2.4 28 52-79 62-89 (120)
331 KOG2603 Oligosaccharyltransfer 38.9 72 0.0016 23.6 4.3 32 31-62 60-95 (331)
332 TIGR02765 crypto_DASH cryptoch 38.7 87 0.0019 23.9 5.0 41 49-89 59-99 (429)
333 cd03055 GST_N_Omega GST_N fami 38.6 77 0.0017 18.1 4.5 17 40-56 24-40 (89)
334 PF02743 Cache_1: Cache domain 38.6 25 0.00053 19.7 1.6 14 120-133 53-66 (81)
335 TIGR02742 TrbC_Ftype type-F co 38.6 1E+02 0.0023 19.5 6.1 64 52-129 13-81 (130)
336 PRK10853 putative reductase; P 38.6 96 0.0021 19.2 5.4 46 36-88 3-52 (118)
337 PLN02945 nicotinamide-nucleoti 38.2 1.3E+02 0.0028 21.0 5.5 43 25-68 15-57 (236)
338 PRK08244 hypothetical protein; 38.0 38 0.00082 26.2 3.0 34 4-37 391-426 (493)
339 PF13417 GST_N_3: Glutathione 37.6 65 0.0014 17.6 3.3 18 38-55 2-19 (75)
340 PF14062 DUF4253: Domain of un 37.3 72 0.0016 19.5 3.6 42 43-87 26-78 (111)
341 COG0525 ValS Valyl-tRNA synthe 37.1 25 0.00053 29.7 1.9 19 114-132 282-300 (877)
342 TIGR01428 HAD_type_II 2-haloal 36.9 84 0.0018 20.7 4.2 37 51-87 95-131 (198)
343 smart00701 PGRP Animal peptido 36.9 21 0.00045 22.9 1.2 14 119-132 62-75 (142)
344 TIGR01511 ATPase-IB1_Cu copper 36.7 95 0.002 24.8 5.0 40 49-88 406-445 (562)
345 PRK11033 zntA zinc/cadmium/mer 36.6 82 0.0018 26.1 4.8 40 50-89 570-609 (741)
346 PF01380 SIS: SIS domain SIS d 36.4 51 0.0011 19.9 2.9 31 52-82 68-98 (131)
347 TIGR00591 phr2 photolyase PhrI 36.4 1E+02 0.0023 23.7 5.1 42 48-89 75-116 (454)
348 cd08356 Glo_EDI_BRP_like_17 Th 36.3 79 0.0017 18.8 3.7 22 67-88 58-79 (113)
349 TIGR01647 ATPase-IIIA_H plasma 36.3 93 0.002 25.8 5.0 34 56-89 450-483 (755)
350 PF03193 DUF258: Protein of un 36.1 68 0.0015 21.2 3.5 42 55-96 3-44 (161)
351 KOG1123 RNA polymerase II tran 36.0 2.4E+02 0.0051 22.9 7.8 66 23-89 480-567 (776)
352 PF00448 SRP54: SRP54-type pro 35.8 79 0.0017 21.4 4.0 34 56-89 21-59 (196)
353 PF04551 GcpE: GcpE protein; 35.4 1.4E+02 0.0031 22.6 5.4 62 29-94 13-80 (359)
354 TIGR01698 PUNP purine nucleoti 35.3 1.2E+02 0.0025 21.5 4.8 60 9-71 27-90 (237)
355 PRK15062 hydrogenase isoenzyme 35.1 35 0.00076 25.7 2.2 64 35-99 54-122 (364)
356 COG1535 EntB Isochorismate hyd 35.0 36 0.00077 23.2 2.1 38 33-71 41-78 (218)
357 cd01453 vWA_transcription_fact 34.9 1.4E+02 0.003 19.8 7.4 49 54-103 126-175 (183)
358 PRK12702 mannosyl-3-phosphogly 34.9 1.8E+02 0.0039 21.5 5.8 38 57-94 27-64 (302)
359 PF05378 Hydant_A_N: Hydantoin 34.9 78 0.0017 21.1 3.7 28 45-72 128-155 (176)
360 TIGR01681 HAD-SF-IIIC HAD-supe 34.7 1.1E+02 0.0024 18.8 5.2 39 48-86 29-68 (128)
361 cd05006 SIS_GmhA Phosphoheptos 34.4 38 0.00082 22.2 2.2 22 52-73 116-137 (177)
362 TIGR03556 photolyase_8HDF deox 34.3 1.1E+02 0.0024 23.7 5.0 43 47-89 51-93 (471)
363 TIGR02463 MPGP_rel mannosyl-3- 34.0 1.5E+02 0.0032 20.0 5.7 39 55-93 23-62 (221)
364 TIGR01675 plant-AP plant acid 33.9 1.2E+02 0.0026 21.3 4.7 40 50-89 122-164 (229)
365 TIGR01489 DKMTPPase-SF 2,3-dik 33.8 1E+02 0.0022 19.9 4.2 36 53-88 77-112 (188)
366 TIGR01684 viral_ppase viral ph 33.7 1.5E+02 0.0032 21.9 5.2 40 50-89 148-187 (301)
367 PF02966 DIM1: Mitosis protein 33.7 1.3E+02 0.0028 19.3 4.6 45 29-75 19-63 (133)
368 PF07449 HyaE: Hydrogenase-1 e 33.5 1.2E+02 0.0025 18.6 4.1 9 97-105 72-80 (107)
369 COG2217 ZntA Cation transport 33.4 94 0.002 25.8 4.6 49 55-103 544-595 (713)
370 TIGR00075 hypD hydrogenase exp 33.3 39 0.00085 25.5 2.3 84 12-99 33-128 (369)
371 COG3695 Predicted methylated D 33.2 25 0.00053 21.4 1.0 26 1-26 46-71 (103)
372 TIGR02000 NifU_proper Fe-S clu 33.2 99 0.0021 22.5 4.3 40 20-62 240-279 (290)
373 PRK11867 2-oxoglutarate ferred 33.0 50 0.0011 23.9 2.8 20 41-61 18-37 (286)
374 COG1453 Predicted oxidoreducta 32.8 2E+02 0.0043 22.0 5.8 34 56-89 135-170 (391)
375 TIGR01670 YrbI-phosphatas 3-de 32.7 1.1E+02 0.0023 19.6 4.1 31 58-88 38-68 (154)
376 cd07766 DHQ_Fe-ADH Dehydroquin 32.6 79 0.0017 23.0 3.8 77 52-129 66-150 (332)
377 PF08285 DPM3: Dolichol-phosph 32.5 53 0.0012 19.5 2.4 27 41-67 64-91 (91)
378 PF02670 DXP_reductoisom: 1-de 32.5 48 0.001 21.0 2.3 33 64-96 24-57 (129)
379 TIGR01482 SPP-subfamily Sucros 32.4 1.6E+02 0.0034 19.8 5.6 33 57-89 24-56 (225)
380 KOG1842 FYVE finger-containing 32.4 30 0.00066 26.8 1.6 20 42-61 17-36 (505)
381 cd08353 Glo_EDI_BRP_like_7 Thi 32.4 1.2E+02 0.0026 18.5 5.5 50 63-132 86-135 (142)
382 COG0467 RAD55 RecA-superfamily 32.2 1.8E+02 0.0039 20.4 6.5 45 44-89 32-77 (260)
383 cd03061 GST_N_CLIC GST_N famil 32.2 58 0.0013 19.2 2.5 46 42-96 21-69 (91)
384 TIGR01525 ATPase-IB_hvy heavy 32.1 1.3E+02 0.0028 23.9 5.1 41 49-89 385-426 (556)
385 PRK13222 phosphoglycolate phos 31.4 1.2E+02 0.0025 20.4 4.3 38 51-88 96-133 (226)
386 TIGR03590 PseG pseudaminic aci 31.4 1.9E+02 0.0042 20.5 6.7 35 59-94 48-87 (279)
387 COG0854 PdxJ Pyridoxal phospha 31.0 1.2E+02 0.0027 21.3 4.2 44 45-89 105-148 (243)
388 cd04795 SIS SIS domain. SIS (S 31.0 76 0.0017 17.5 2.9 21 51-71 61-81 (87)
389 PRK13288 pyrophosphatase PpaX; 30.9 1.2E+02 0.0026 20.3 4.3 38 51-88 85-122 (214)
390 PRK10867 signal recognition pa 30.9 2.6E+02 0.0055 21.8 6.7 55 31-89 99-159 (433)
391 PRK15122 magnesium-transportin 30.8 1.2E+02 0.0026 25.9 4.9 37 52-88 554-590 (903)
392 cd03022 DsbA_HCCA_Iso DsbA fam 30.8 52 0.0011 21.5 2.4 24 37-60 3-26 (192)
393 PHA03398 viral phosphatase sup 30.7 1.6E+02 0.0035 21.7 5.0 40 50-89 150-189 (303)
394 PF13344 Hydrolase_6: Haloacid 30.6 63 0.0014 19.2 2.5 40 50-89 16-58 (101)
395 KOG3414 Component of the U4/U6 30.5 1.5E+02 0.0033 19.0 5.6 54 30-88 23-76 (142)
396 COG1503 eRF1 Peptide chain rel 30.3 93 0.002 24.0 3.8 21 57-77 371-391 (411)
397 TIGR02826 RNR_activ_nrdG3 anae 30.1 67 0.0014 20.7 2.7 26 22-48 7-34 (147)
398 cd08362 BphC5-RrK37_N_like N-t 30.0 1E+02 0.0022 18.0 3.5 12 121-132 100-111 (120)
399 TIGR02461 osmo_MPG_phos mannos 29.9 1.9E+02 0.0041 19.9 5.8 39 55-93 22-60 (225)
400 TIGR01524 ATPase-IIIB_Mg magne 29.7 1.3E+02 0.0027 25.6 4.8 36 53-88 520-555 (867)
401 TIGR01487 SPP-like sucrose-pho 29.7 1.8E+02 0.0038 19.5 5.5 34 56-89 26-59 (215)
402 PF07494 Reg_prop: Two compone 29.7 52 0.0011 13.9 1.6 11 122-132 8-18 (24)
403 TIGR02253 CTE7 HAD superfamily 29.7 1.1E+02 0.0023 20.5 3.9 37 52-88 98-134 (221)
404 PRK01018 50S ribosomal protein 29.5 1.3E+02 0.0028 17.9 7.2 50 56-105 24-77 (99)
405 cd03024 DsbA_FrnE DsbA family, 29.5 74 0.0016 21.0 3.0 25 37-61 3-27 (201)
406 COG0541 Ffh Signal recognition 29.4 2.8E+02 0.0061 21.7 6.9 55 31-89 99-158 (451)
407 PF09651 Cas_APE2256: CRISPR-a 29.2 1.5E+02 0.0034 18.7 4.6 9 66-74 24-32 (136)
408 TIGR03127 RuMP_HxlB 6-phospho 29.1 58 0.0013 21.3 2.4 10 80-89 93-102 (179)
409 COG5561 Predicted metal-bindin 29.0 58 0.0013 19.4 2.0 27 43-70 7-33 (101)
410 PRK10517 magnesium-transportin 28.9 1.3E+02 0.0028 25.7 4.8 38 51-88 553-590 (902)
411 COG0546 Gph Predicted phosphat 28.8 1.3E+02 0.0028 20.5 4.2 40 50-89 91-130 (220)
412 PTZ00106 60S ribosomal protein 28.6 1.4E+02 0.0031 18.2 6.5 49 57-105 34-86 (108)
413 COG3919 Predicted ATP-grasp en 28.5 1.3E+02 0.0027 22.5 4.1 11 118-128 127-137 (415)
414 KOG2944 Glyoxalase [Carbohydra 28.5 1.8E+02 0.004 19.3 4.9 26 63-88 114-139 (170)
415 COG0796 MurI Glutamate racemas 28.2 2.4E+02 0.0051 20.5 7.5 59 33-93 32-96 (269)
416 PHA00447 lysozyme 28.1 42 0.0009 21.6 1.5 14 119-132 42-55 (142)
417 TIGR01352 tonB_Cterm TonB fami 28.0 39 0.00085 18.3 1.3 14 119-132 11-24 (74)
418 PRK00192 mannosyl-3-phosphogly 27.8 2.2E+02 0.0048 20.0 5.8 35 55-89 28-62 (273)
419 TIGR03831 YgiT_finger YgiT-typ 27.8 41 0.00089 16.4 1.2 20 29-48 21-40 (46)
420 PRK13601 putative L7Ae-like ri 27.8 1.3E+02 0.0028 17.4 6.8 50 57-107 17-70 (82)
421 PRK07190 hypothetical protein; 27.8 52 0.0011 25.6 2.2 33 5-37 382-415 (487)
422 PF05673 DUF815: Protein of un 27.7 1.9E+02 0.0041 20.7 4.8 55 53-107 69-131 (249)
423 COG5418 Predicted secreted pro 27.7 91 0.002 20.4 2.9 27 45-71 78-104 (164)
424 COG0794 GutQ Predicted sugar p 27.6 68 0.0015 22.1 2.5 33 49-81 98-130 (202)
425 PRK10826 2-deoxyglucose-6-phos 27.5 1.2E+02 0.0027 20.4 3.9 36 52-87 96-131 (222)
426 PF03544 TonB_C: Gram-negative 27.5 31 0.00068 19.0 0.8 14 119-132 17-30 (79)
427 PF12907 zf-met2: Zinc-binding 27.4 35 0.00076 17.0 0.8 20 42-61 3-25 (40)
428 COG1465 Predicted alternative 27.4 1.1E+02 0.0023 22.7 3.5 29 9-37 329-358 (376)
429 TIGR01522 ATPase-IIA2_Ca golgi 27.3 1.6E+02 0.0034 25.0 5.0 38 51-88 531-568 (884)
430 PRK14988 GMP/IMP nucleotidase; 27.3 1.4E+02 0.0031 20.4 4.2 38 50-87 95-132 (224)
431 TIGR01459 HAD-SF-IIA-hyp4 HAD- 27.2 1.2E+02 0.0026 21.0 3.8 38 50-87 26-65 (242)
432 PF12689 Acid_PPase: Acid Phos 27.1 1.5E+02 0.0032 19.8 4.0 37 52-88 49-86 (169)
433 COG1180 PflA Pyruvate-formate 27.0 45 0.00097 23.7 1.7 28 21-49 26-55 (260)
434 COG1709 Predicted transcriptio 26.8 1.2E+02 0.0026 21.4 3.5 33 68-107 22-54 (241)
435 TIGR00441 gmhA phosphoheptose 26.7 60 0.0013 20.9 2.1 11 62-72 104-114 (154)
436 PF10230 DUF2305: Uncharacteri 26.6 1.6E+02 0.0035 20.9 4.4 39 32-72 2-40 (266)
437 PRK05778 2-oxoglutarate ferred 26.4 69 0.0015 23.4 2.6 24 38-62 16-39 (301)
438 TIGR01454 AHBA_synth_RP 3-amin 26.3 1.4E+02 0.0031 19.7 4.0 37 51-87 78-114 (205)
439 TIGR03341 YhgI_GntY IscR-regul 26.3 89 0.0019 21.2 2.9 50 20-71 127-180 (190)
440 TIGR00108 eRF peptide chain re 26.2 75 0.0016 24.3 2.8 34 43-76 349-388 (409)
441 PF03716 WCCH: WCCH motif ; I 26.2 22 0.00048 15.7 0.0 9 42-50 7-15 (25)
442 cd08351 ChaP_like ChaP, an enz 26.1 80 0.0017 18.9 2.5 13 120-132 103-115 (123)
443 TIGR00099 Cof-subfamily Cof su 25.8 2.3E+02 0.005 19.6 5.9 32 57-88 25-56 (256)
444 PF07476 MAAL_C: Methylasparta 25.8 2.5E+02 0.0054 20.0 5.4 47 43-89 115-164 (248)
445 cd07241 Glo_EDI_BRP_like_3 Thi 25.6 1.5E+02 0.0032 17.3 4.3 23 64-86 70-92 (125)
446 PRK13937 phosphoheptose isomer 25.5 73 0.0016 21.3 2.4 10 80-89 127-136 (188)
447 TIGR03351 PhnX-like phosphonat 25.4 1.4E+02 0.003 20.0 3.8 38 51-88 90-127 (220)
448 PF13894 zf-C2H2_4: C2H2-type 25.3 9.9 0.00021 15.5 -1.3 16 43-58 3-18 (24)
449 cd08196 DHQS-like1 Dehydroquin 25.3 1.6E+02 0.0035 21.9 4.4 35 49-83 58-96 (346)
450 PF01383 CpcD: CpcD/allophycoc 25.3 1.2E+02 0.0026 16.1 2.8 21 52-72 35-55 (56)
451 PRK13225 phosphoglycolate phos 25.2 1.6E+02 0.0034 21.1 4.2 39 50-88 144-182 (273)
452 PF04723 GRDA: Glycine reducta 25.2 67 0.0015 20.8 2.0 36 38-73 35-77 (150)
453 cd08197 DOIS 2-deoxy-scyllo-in 25.1 1.4E+02 0.003 22.4 4.0 36 49-84 66-105 (355)
454 PRK06724 hypothetical protein; 24.7 1.2E+02 0.0027 18.7 3.2 12 121-132 106-117 (128)
455 PF01248 Ribosomal_L7Ae: Ribos 24.7 1.5E+02 0.0033 17.1 4.9 52 54-106 21-77 (95)
456 TIGR03333 salvage_mtnX 2-hydro 24.6 2.3E+02 0.0049 19.1 5.1 36 51-86 73-108 (214)
457 TIGR01680 Veg_Stor_Prot vegeta 24.6 1.8E+02 0.004 21.1 4.3 40 50-89 147-189 (275)
458 cd05005 SIS_PHI Hexulose-6-pho 24.6 71 0.0015 21.0 2.2 15 80-94 96-110 (179)
459 PLN02770 haloacid dehalogenase 24.5 1.7E+02 0.0037 20.3 4.2 38 51-88 111-148 (248)
460 PF10443 RNA12: RNA12 protein; 24.5 3.1E+02 0.0068 21.4 5.7 74 31-105 149-226 (431)
461 cd07262 Glo_EDI_BRP_like_19 Th 24.4 1.2E+02 0.0026 17.9 3.1 22 65-86 65-86 (123)
462 PF09237 GAGA: GAGA factor; I 24.4 13 0.00027 19.7 -1.1 18 43-60 27-44 (54)
463 cd03052 GST_N_GDAP1 GST_N fami 24.2 1.4E+02 0.0029 16.3 3.9 54 37-95 3-58 (73)
464 PF07680 DoxA: TQO small subun 24.0 58 0.0013 20.9 1.6 29 103-133 33-61 (133)
465 COG2607 Predicted ATPase (AAA+ 23.9 2.3E+02 0.0049 20.6 4.6 55 53-107 102-164 (287)
466 cd07252 BphC1-RGP6_N_like N-te 23.8 1.7E+02 0.0037 17.3 5.8 12 121-132 100-111 (120)
467 TIGR00288 conserved hypothetic 23.7 1.6E+02 0.0035 19.5 3.6 23 67-89 109-132 (160)
468 TIGR01689 EcbF-BcbF capsule bi 23.6 2E+02 0.0043 18.1 4.9 36 54-89 30-80 (126)
469 PRK08674 bifunctional phosphog 23.5 1.9E+02 0.0042 21.2 4.5 30 57-88 98-127 (337)
470 PRK06834 hypothetical protein; 23.5 74 0.0016 24.8 2.4 33 5-37 382-415 (488)
471 TIGR01549 HAD-SF-IA-v1 haloaci 23.4 1.8E+02 0.0039 18.1 3.9 34 51-84 67-100 (154)
472 PRK15126 thiamin pyrimidine py 23.4 2.7E+02 0.0058 19.5 5.8 32 58-89 29-60 (272)
473 TIGR02177 PorB_KorB 2-oxoacid: 23.4 78 0.0017 23.0 2.3 19 41-59 2-22 (287)
474 COG0266 Nei Formamidopyrimidin 23.4 23 0.0005 25.6 -0.4 9 39-47 264-272 (273)
475 PF04423 Rad50_zn_hook: Rad50 23.3 24 0.00052 18.4 -0.2 11 42-52 22-32 (54)
476 PRK09552 mtnX 2-hydroxy-3-keto 23.3 1.8E+02 0.0038 19.7 4.0 36 50-85 76-111 (219)
477 PRK11866 2-oxoacid ferredoxin 23.3 83 0.0018 22.8 2.5 22 39-60 6-29 (279)
478 PF04800 ETC_C1_NDUFA4: ETC co 23.0 89 0.0019 19.0 2.2 27 68-94 51-77 (101)
479 TIGR01116 ATPase-IIA1_Ca sarco 23.0 2E+02 0.0044 24.5 5.0 33 56-88 545-577 (917)
480 PRK11478 putative lyase; Provi 23.0 1.8E+02 0.0038 17.3 5.2 25 64-88 75-99 (129)
481 PRK14974 cell division protein 22.9 3E+02 0.0064 20.5 5.3 55 31-89 139-198 (336)
482 TIGR01616 nitro_assoc nitrogen 22.9 2E+02 0.0044 18.0 5.7 43 37-86 5-51 (126)
483 TIGR01517 ATPase-IIB_Ca plasma 22.9 1.9E+02 0.004 24.8 4.7 34 55-88 586-619 (941)
484 PF04502 DUF572: Family of unk 22.8 61 0.0013 23.9 1.7 38 11-52 13-52 (324)
485 PRK00414 gmhA phosphoheptose i 22.8 88 0.0019 21.0 2.4 27 63-89 111-141 (192)
486 TIGR01523 ATPase-IID_K-Na pota 22.8 2E+02 0.0044 25.1 4.9 32 57-88 655-686 (1053)
487 TIGR01422 phosphonatase phosph 22.8 1.5E+02 0.0033 20.5 3.7 37 51-87 102-138 (253)
488 PF12617 LdpA_C: Iron-Sulfur b 22.6 1.8E+02 0.0038 19.8 3.7 17 65-81 37-53 (183)
489 PRK01158 phosphoglycolate phos 22.4 2.5E+02 0.0055 18.8 6.7 36 54-89 26-61 (230)
490 TIGR01509 HAD-SF-IA-v3 haloaci 22.3 2.1E+02 0.0047 18.2 4.2 37 50-87 87-123 (183)
491 COG3529 Predicted nucleic-acid 22.3 35 0.00075 18.7 0.3 27 37-68 7-33 (66)
492 PRK13938 phosphoheptose isomer 22.3 90 0.0019 21.2 2.4 20 55-74 131-150 (196)
493 PF11760 CbiG_N: Cobalamin syn 22.2 63 0.0014 18.9 1.4 14 118-131 36-49 (84)
494 PRK12723 flagellar biosynthesi 22.1 3.6E+02 0.0079 20.6 8.3 27 63-89 205-236 (388)
495 PF04244 DPRP: Deoxyribodipyri 22.1 2.8E+02 0.0061 19.3 5.5 47 50-96 48-101 (224)
496 PLN03243 haloacid dehalogenase 22.0 2E+02 0.0044 20.3 4.2 38 51-88 112-149 (260)
497 KOG4530 Predicted flavoprotein 22.0 1.6E+02 0.0034 19.7 3.3 30 29-58 117-146 (199)
498 COG1490 Dtd D-Tyr-tRNAtyr deac 22.0 98 0.0021 20.0 2.3 35 65-99 28-62 (145)
499 TIGR02451 anti_sig_ChrR anti-s 21.9 72 0.0016 22.0 1.9 22 41-62 29-50 (215)
500 COG4252 Predicted transmembran 21.8 1.8E+02 0.0039 22.4 4.1 80 51-133 83-167 (400)
No 1
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-37 Score=199.16 Aligned_cols=132 Identities=25% Similarity=0.447 Sum_probs=122.7
Q ss_pred CCCCCCCCCCCceEEecCCC-eeecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHH
Q 044272 1 MPGLTIGDSVPNLQVQTNQG-NFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHN 79 (133)
Q Consensus 1 m~~l~~G~~~p~f~l~~~~G-~~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~ 79 (133)
|..+.+|+++|||+|++++| +++|+|+ +|+++||+||+..++|.|+.++..+++.+++|++.|..|++||.|++++++
T Consensus 1 ~~~l~~G~~aPdF~Lp~~~g~~v~Lsd~-~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~ 79 (157)
T COG1225 1 MMMLKVGDKAPDFELPDQDGETVSLSDL-RGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHK 79 (157)
T ss_pred CCcCCCCCcCCCeEeecCCCCEEehHHh-cCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHH
Confidence 45689999999999999999 8999999 889999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCceeeCCcHHHHHHcCCCCCCCCCCCCCCccceeEEEECCCCccC
Q 044272 80 EWIKDIEAYTPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVQ 133 (133)
Q Consensus 80 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~ 133 (133)
+|+++++.+|++++|++.+++++||++.++.+.+...+...|++||||++|+|+
T Consensus 80 ~F~~k~~L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~ 133 (157)
T COG1225 80 KFAEKHGLTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIR 133 (157)
T ss_pred HHHHHhCCCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEE
Confidence 999999999999999999999999999876544444446999999999999985
No 2
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.98 E-value=3.2e-31 Score=173.10 Aligned_cols=132 Identities=19% Similarity=0.341 Sum_probs=115.7
Q ss_pred CCCCCCCCCCCceEEecCCC-eeecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHH
Q 044272 1 MPGLTIGDSVPNLQVQTNQG-NFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHN 79 (133)
Q Consensus 1 m~~l~~G~~~p~f~l~~~~G-~~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~ 79 (133)
|+.+.+|+.+|+|++++.+| .++++++ +|++++|+||++.|||.|+.+++.|++++++++++|+++|+||.|+.+.++
T Consensus 1 ~~~~~~g~~~p~f~l~~~~G~~~~l~~~-~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~ 79 (154)
T PRK09437 1 MNPLKAGDIAPKFSLPDQDGEQVSLTDF-QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLS 79 (154)
T ss_pred CCcCCCCCcCCCcEeeCCCCCEEeHHHh-CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHH
Confidence 78899999999999999999 8999999 889999999988899999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCceeeCCcHHHHHHcCCCCCCCCCCCCCCccceeEEEECCCCccC
Q 044272 80 EWIKDIEAYTPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVQ 133 (133)
Q Consensus 80 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~ 133 (133)
+|+++++.++++++|+++.+.+.||+...+.....+.....|++||||++|+|+
T Consensus 80 ~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~ 133 (154)
T PRK09437 80 RFAEKELLNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIE 133 (154)
T ss_pred HHHHHhCCCCeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEE
Confidence 999999999999999999999999997543221111111247899999999985
No 3
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.98 E-value=2.4e-31 Score=167.56 Aligned_cols=121 Identities=22% Similarity=0.562 Sum_probs=112.4
Q ss_pred CCCCCCceEEecCCC-eeecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHh
Q 044272 6 IGDSVPNLQVQTNQG-NFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKD 84 (133)
Q Consensus 6 ~G~~~p~f~l~~~~G-~~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~ 84 (133)
+|+++|+|++++.+| +++|+++ +|++++|+||++.|||.|..++++|++++++++++|+++++||.|+.+.+++|.++
T Consensus 1 vG~~~P~f~l~~~~g~~~~l~~l-~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~ 79 (124)
T PF00578_consen 1 VGDKAPDFTLTDSDGKTVSLSDL-KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEE 79 (124)
T ss_dssp TTSBGGCEEEETTTSEEEEGGGG-TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHH
T ss_pred CcCCCCCcEeECCCCCEEEHHHH-CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhh
Confidence 699999999999999 8999999 88999999998889999999999999999999999999999999999999999999
Q ss_pred cCCCCceeeCCcHHHHHHcCCCCCCCCCCCCCCccceeEEEECCCCccC
Q 044272 85 IEAYTPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVQ 133 (133)
Q Consensus 85 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~ 133 (133)
++.+++++.|.+..+.+.|++.... .....|++||||++|+|+
T Consensus 80 ~~~~~~~~~D~~~~~~~~~~~~~~~------~~~~~p~~~lid~~g~I~ 122 (124)
T PF00578_consen 80 YGLPFPVLSDPDGELAKAFGIEDEK------DTLALPAVFLIDPDGKIR 122 (124)
T ss_dssp HTCSSEEEEETTSHHHHHTTCEETT------TSEESEEEEEEETTSBEE
T ss_pred hccccccccCcchHHHHHcCCcccc------CCceEeEEEEECCCCEEE
Confidence 9999999999999999999996432 124899999999999985
No 4
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.97 E-value=3.9e-30 Score=166.88 Aligned_cols=123 Identities=27% Similarity=0.517 Sum_probs=111.6
Q ss_pred CCCCCCCCceEEecCCC-eeecccccCC-CeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHH
Q 044272 4 LTIGDSVPNLQVQTNQG-NFKLHDFIGD-NWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEW 81 (133)
Q Consensus 4 l~~G~~~p~f~l~~~~G-~~~l~d~~~~-~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~ 81 (133)
|.+|+.+|+|++++.+| .++++++ +| ++++|+||+++||+.|+.++++|+++++++++.|+++++||.|+++.+++|
T Consensus 1 ~~~G~~~p~~~l~~~~g~~v~l~~~-~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~ 79 (149)
T cd03018 1 LEVGDKAPDFELPDQNGQEVRLSEF-RGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAW 79 (149)
T ss_pred CCCCCcCCCcEecCCCCCEEeHHHH-cCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHH
Confidence 57899999999999999 8999999 66 889999999999999999999999999999988999999999999999999
Q ss_pred HHhcCCCCceeeCCc--HHHHHHcCCCCCCCCCCCCCCccceeEEEECCCCccC
Q 044272 82 IKDIEAYTPIIADPN--REIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVQ 133 (133)
Q Consensus 82 ~~~~~~~~~~~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~ 133 (133)
+++++.++++++|.+ +++.+.||+..... + .+.|++||||++|+|+
T Consensus 80 ~~~~~~~~~~~~D~~~~~~~~~~~g~~~~~~----~--~~~~~~~lid~~G~v~ 127 (149)
T cd03018 80 AEENGLTFPLLSDFWPHGEVAKAYGVFDEDL----G--VAERAVFVIDRDGIIR 127 (149)
T ss_pred HHhcCCCceEecCCCchhHHHHHhCCccccC----C--CccceEEEECCCCEEE
Confidence 999999999999987 89999999964321 2 4678999999999985
No 5
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.97 E-value=6e-30 Score=173.76 Aligned_cols=123 Identities=36% Similarity=0.751 Sum_probs=108.9
Q ss_pred CCCCCCCCceEEecCCCeeecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHH
Q 044272 4 LTIGDSVPNLQVQTNQGNFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIK 83 (133)
Q Consensus 4 l~~G~~~p~f~l~~~~G~~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~ 83 (133)
+.+|+.+|+|++.+..|.++|+++ +|++++|+|||++|||.|+.+++.|++++++|+++|++|++||.|+.+...+|++
T Consensus 2 ~~vG~~aP~F~~~~~~g~v~l~d~-~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~ 80 (202)
T PRK13190 2 VKLGQKAPDFTVNTTKGPIDLSKY-KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLR 80 (202)
T ss_pred CCCCCCCCCcEEecCCCcEeHHHh-CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHH
Confidence 579999999999998889999999 7889999999999999999999999999999999999999999999988777764
Q ss_pred ----hcC--CCCceeeCCcHHHHHHcCCCCCCCCCCCCCCccceeEEEECCCCccC
Q 044272 84 ----DIE--AYTPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVQ 133 (133)
Q Consensus 84 ----~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~ 133 (133)
+.+ .++|+++|+++++++.||+...+ .| ...|++||||++|+|+
T Consensus 81 ~~~~~~g~~~~fPll~D~~~~ia~~ygv~~~~----~g--~~~p~~fiId~~G~I~ 130 (202)
T PRK13190 81 DIEERFGIKIPFPVIADIDKELAREYNLIDEN----SG--ATVRGVFIIDPNQIVR 130 (202)
T ss_pred hHHHhcCCCceEEEEECCChHHHHHcCCcccc----CC--cEEeEEEEECCCCEEE
Confidence 344 36799999999999999996432 22 3689999999999985
No 6
>PRK13189 peroxiredoxin; Provisional
Probab=99.97 E-value=9.8e-30 Score=174.77 Aligned_cols=126 Identities=41% Similarity=0.678 Sum_probs=109.8
Q ss_pred CCCCCCCCCceEEecCCCeeecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHH
Q 044272 3 GLTIGDSVPNLQVQTNQGNFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWI 82 (133)
Q Consensus 3 ~l~~G~~~p~f~l~~~~G~~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~ 82 (133)
.+.+|+.+|+|++++..|.++++++.+|++++|+|||++|||.|+.+++.|++++++|+++|++|++||.|+.....+|.
T Consensus 8 ~~~vG~~aPdF~~~~~~g~~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~ 87 (222)
T PRK13189 8 MPLIGDKFPEFEVKTTHGPIKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWV 87 (222)
T ss_pred cccCCCcCCCcEeEcCCCCEeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHH
Confidence 46789999999999999988888754788999999999999999999999999999999999999999999999888887
Q ss_pred Hhc------CCCCceeeCCcHHHHHHcCCCCCCCCCCCCCCccceeEEEECCCCccC
Q 044272 83 KDI------EAYTPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVQ 133 (133)
Q Consensus 83 ~~~------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~ 133 (133)
+.. +.++|+++|.+..+++.||+..... .+ ...|++||||++|+|+
T Consensus 88 ~~~~~~~g~~i~fPllsD~~~~ia~~ygv~~~~~---~~--~~~r~tfIID~~G~Ir 139 (222)
T PRK13189 88 EWIKEKLGVEIEFPIIADDRGEIAKKLGMISPGK---GT--NTVRAVFIIDPKGIIR 139 (222)
T ss_pred HhHHHhcCcCcceeEEEcCccHHHHHhCCCcccc---CC--CceeEEEEECCCCeEE
Confidence 752 3567999999999999999964321 11 2789999999999985
No 7
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=99.97 E-value=1.3e-29 Score=169.88 Aligned_cols=123 Identities=28% Similarity=0.497 Sum_probs=109.2
Q ss_pred CCCCCCCCceEEecC-CC---eeecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHH
Q 044272 4 LTIGDSVPNLQVQTN-QG---NFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHN 79 (133)
Q Consensus 4 l~~G~~~p~f~l~~~-~G---~~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~ 79 (133)
+.+|+++|+|+.+.. +| +++|+++ +||++||+||+++|||.|+.+++.|++++++++++|++|++||.|+++.++
T Consensus 2 ~~~~~~~p~f~~~~~~~g~~~~v~L~d~-~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~ 80 (187)
T PRK10382 2 SLINTKIKPFKNQAFKNGEFIEVTEKDT-EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHK 80 (187)
T ss_pred CccCCcCCCcEEEEEeCCcceEEEHHHh-CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHH
Confidence 468999999999874 45 5899999 788999999999999999999999999999999999999999999999999
Q ss_pred HHHHhc----CCCCceeeCCcHHHHHHcCCCCCCCCCCCCCCccceeEEEECCCCccC
Q 044272 80 EWIKDI----EAYTPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVQ 133 (133)
Q Consensus 80 ~~~~~~----~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~ 133 (133)
+|++.. +.++|+++|++.++++.||+..++ .| ...|++||||++|+|+
T Consensus 81 a~~~~~~~~~~l~fpllsD~~~~ia~~ygv~~~~----~g--~~~r~tfIID~~G~I~ 132 (187)
T PRK10382 81 AWHSSSETIAKIKYAMIGDPTGALTRNFDNMRED----EG--LADRATFVVDPQGIIQ 132 (187)
T ss_pred HHHHhhccccCCceeEEEcCchHHHHHcCCCccc----CC--ceeeEEEEECCCCEEE
Confidence 999764 667799999999999999996432 22 3679999999999985
No 8
>PRK13599 putative peroxiredoxin; Provisional
Probab=99.97 E-value=1.4e-29 Score=173.13 Aligned_cols=123 Identities=37% Similarity=0.699 Sum_probs=107.7
Q ss_pred CCCCCCCceEEecCCC-eeecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHH
Q 044272 5 TIGDSVPNLQVQTNQG-NFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIK 83 (133)
Q Consensus 5 ~~G~~~p~f~l~~~~G-~~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~ 83 (133)
.+|+++|+|++.+.+| ...++++ +|+++||+||+++|||+|+.+++.|++++++|+++|+++++||.|+.+...+|.+
T Consensus 3 ~~Gd~aPdF~l~t~~G~~~~~~~~-~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~ 81 (215)
T PRK13599 3 LLGEKFPSMEVVTTQGVKRLPEDY-AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVE 81 (215)
T ss_pred CCCCCCCCCEeECCCCcEecHHHH-CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHH
Confidence 6899999999999999 5666888 7889999999999999999999999999999999999999999999998888765
Q ss_pred ------hcCCCCceeeCCcHHHHHHcCCCCCCCCCCCCCCccceeEEEECCCCccC
Q 044272 84 ------DIEAYTPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVQ 133 (133)
Q Consensus 84 ------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~ 133 (133)
..+.+||+++|+++++++.||+..+.. + ....|++||||++|+|+
T Consensus 82 ~i~~~~~~~i~fPil~D~~~~va~~yg~~~~~~----~-~~~~R~tfIID~dG~Ir 132 (215)
T PRK13599 82 WIKDNTNIAIPFPVIADDLGKVSNQLGMIHPGK----G-TNTVRAVFIVDDKGTIR 132 (215)
T ss_pred hHHHhcCCCCceeEEECCCchHHHHcCCCccCC----C-CceeeEEEEECCCCEEE
Confidence 235677999999999999999965321 2 12689999999999985
No 9
>PRK13191 putative peroxiredoxin; Provisional
Probab=99.97 E-value=1.3e-29 Score=173.34 Aligned_cols=124 Identities=43% Similarity=0.735 Sum_probs=108.3
Q ss_pred CCCCCCCCceEEecCCCeeeccc-ccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHH
Q 044272 4 LTIGDSVPNLQVQTNQGNFKLHD-FIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWI 82 (133)
Q Consensus 4 l~~G~~~p~f~l~~~~G~~~l~d-~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~ 82 (133)
+.+|+++|+|++.+.+|++.+++ + +|++++|+||+++||+.|+.+++.|++++++|+++|++|++||.|+.....+|.
T Consensus 7 ~~iG~~aPdF~l~~~~G~~~l~~~~-~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~ 85 (215)
T PRK13191 7 PLIGEKFPEMEVITTHGKIKLPDDY-KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWV 85 (215)
T ss_pred ccCCCcCCCCEeecCCCCEEcHHHh-CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHH
Confidence 56899999999999999777755 6 788999999999999999999999999999999999999999999999888876
Q ss_pred H------hcCCCCceeeCCcHHHHHHcCCCCCCCCCCCCCCccceeEEEECCCCccC
Q 044272 83 K------DIEAYTPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVQ 133 (133)
Q Consensus 83 ~------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~ 133 (133)
+ ..+.++|+++|++.++++.||+..++. .+ ...|++||||++|+|+
T Consensus 86 ~~~~~~~~~~i~fPllsD~~~~ia~~ygv~~~~~---~~--~~~r~tfIID~~G~Ir 137 (215)
T PRK13191 86 MWIEKNLKVEVPFPIIADPMGNVAKRLGMIHAES---ST--ATVRAVFIVDDKGTVR 137 (215)
T ss_pred hhHHHhcCCCCceEEEECCchHHHHHcCCccccc---CC--ceeEEEEEECCCCEEE
Confidence 5 235667999999999999999965331 12 4789999999999985
No 10
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=99.97 E-value=2e-29 Score=171.42 Aligned_cols=124 Identities=56% Similarity=1.059 Sum_probs=108.5
Q ss_pred CCCCCCceEEecCCCeeecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHh-
Q 044272 6 IGDSVPNLQVQTNQGNFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKD- 84 (133)
Q Consensus 6 ~G~~~p~f~l~~~~G~~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~- 84 (133)
+|+.+|+|++++.+|.++++++.++++++|+||+++|||.|+.+++.|++++++|+++|++|++||.|+.+...+|.+.
T Consensus 1 vG~~aP~F~~~~~~g~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i 80 (203)
T cd03016 1 LGDTAPNFEADTTHGPIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDI 80 (203)
T ss_pred CcCCCCCeEEecCCCcEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhH
Confidence 5899999999999899999999433789999999999999999999999999999999999999999999988888775
Q ss_pred -----cCCCCceeeCCcHHHHHHcCCCCCCCCCCCCCCccceeEEEECCCCccC
Q 044272 85 -----IEAYTPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVQ 133 (133)
Q Consensus 85 -----~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~ 133 (133)
.+.+||+++|++..+++.||+..... +.....|++||||++|+|+
T Consensus 81 ~~~~~~~~~fpil~D~~~~ia~~yg~~~~~~----~~~~~~r~~fiID~~G~I~ 130 (203)
T cd03016 81 EEYTGVEIPFPIIADPDREVAKLLGMIDPDA----GSTLTVRAVFIIDPDKKIR 130 (203)
T ss_pred HHhcCCCCceeEEECchHHHHHHcCCccccC----CCCceeeEEEEECCCCeEE
Confidence 57778999999999999999965321 2224678999999999985
No 11
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.97 E-value=1.8e-29 Score=169.65 Aligned_cols=122 Identities=25% Similarity=0.506 Sum_probs=107.2
Q ss_pred CCCCCCCceEEec-CCC---eeecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHH
Q 044272 5 TIGDSVPNLQVQT-NQG---NFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNE 80 (133)
Q Consensus 5 ~~G~~~p~f~l~~-~~G---~~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~ 80 (133)
.+|+++|+|++++ .+| .++++++ +|+++||+||+++||+.|+.+++.|++++++++++|++|++||.|+.+.+++
T Consensus 3 ~~G~~aP~f~l~~~~~g~~~~~sl~d~-~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~ 81 (187)
T TIGR03137 3 LINTEIKPFKATAYHNGEFVEVTDEDV-KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKA 81 (187)
T ss_pred ccCCcCCCcEeeeccCCceeEecHHHH-CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHH
Confidence 5799999999998 566 3788899 7899999999999999999999999999999999999999999999998888
Q ss_pred HHHhc----CCCCceeeCCcHHHHHHcCCCCCCCCCCCCCCccceeEEEECCCCccC
Q 044272 81 WIKDI----EAYTPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVQ 133 (133)
Q Consensus 81 ~~~~~----~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~ 133 (133)
|++.. +.++++++|++.++++.||+.... .| .+.|++||||++|+|+
T Consensus 82 ~~~~~~~~~~l~fpllsD~~~~~a~~~gv~~~~----~g--~~~p~tfiID~~G~I~ 132 (187)
T TIGR03137 82 WHDTSEAIGKITYPMLGDPTGVLTRNFGVLIEE----AG--LADRGTFVIDPEGVIQ 132 (187)
T ss_pred HHhhhhhccCcceeEEECCccHHHHHhCCcccC----CC--ceeeEEEEECCCCEEE
Confidence 87764 466799999999999999996432 12 3679999999999985
No 12
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.96 E-value=3.9e-29 Score=160.61 Aligned_cols=122 Identities=22% Similarity=0.406 Sum_probs=109.6
Q ss_pred CCCCceEEecCCC-eeecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcC
Q 044272 8 DSVPNLQVQTNQG-NFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIE 86 (133)
Q Consensus 8 ~~~p~f~l~~~~G-~~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~ 86 (133)
+++|+|++++.+| .++++++ +|++++|+||+++|||.|..+++.|++++++++++++++++||.|+++.+.+|+++++
T Consensus 1 ~~~p~f~l~~~~g~~~~l~~~-~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~ 79 (140)
T cd03017 1 DKAPDFTLPDQDGETVSLSDL-RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYG 79 (140)
T ss_pred CCCCCccccCCCCCEEeHHHh-CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhC
Confidence 4789999999999 8999999 7899999999899999999999999999999999999999999999999999999999
Q ss_pred CCCceeeCCcHHHHHHcCCCCCCCCCCCCCCccceeEEEECCCCccC
Q 044272 87 AYTPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVQ 133 (133)
Q Consensus 87 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~ 133 (133)
..+++++|.+..+.+.||+..... .+.....|++||||++|+|+
T Consensus 80 ~~~~~l~D~~~~~~~~~gv~~~~~---~~~~~~~p~~~lid~~G~v~ 123 (140)
T cd03017 80 LPFPLLSDPDGKLAKAYGVWGEKK---KKYMGIERSTFLIDPDGKIV 123 (140)
T ss_pred CCceEEECCccHHHHHhCCccccc---cccCCcceeEEEECCCCEEE
Confidence 999999999999999999975432 12224679999999999985
No 13
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.96 E-value=3.3e-29 Score=161.67 Aligned_cols=120 Identities=23% Similarity=0.366 Sum_probs=106.8
Q ss_pred CCCCCCCceEEecCCC-eeecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHH
Q 044272 5 TIGDSVPNLQVQTNQG-NFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIK 83 (133)
Q Consensus 5 ~~G~~~p~f~l~~~~G-~~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~ 83 (133)
.+|+.+|+|++++.+| +++|+++ +||++||+||++.|||.|+.+++.|++++++++ |+.+++||.|+.+.+++|.+
T Consensus 1 ~~G~~aP~f~l~~~~g~~~~l~~~-~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--~~~vi~Is~d~~~~~~~~~~ 77 (143)
T cd03014 1 KVGDKAPDFTLVTSDLSEVSLADF-AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--NTVVLTISADLPFAQKRWCG 77 (143)
T ss_pred CCCCCCCCcEEECCCCcEEeHHHh-CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--CCEEEEEECCCHHHHHHHHH
Confidence 3799999999999999 8999999 789999999988889999999999999999874 89999999999999999999
Q ss_pred hcCC-CCceeeCCc-HHHHHHcCCCCCCCCCCCCCCccceeEEEECCCCccC
Q 044272 84 DIEA-YTPIIADPN-REIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVQ 133 (133)
Q Consensus 84 ~~~~-~~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~ 133 (133)
+++. .+++++|.. ..+.+.||+..+. .+ ...|++||||++|+|+
T Consensus 78 ~~~~~~~~~l~D~~~~~~~~~~gv~~~~----~~--~~~~~~~iid~~G~I~ 123 (143)
T cd03014 78 AEGVDNVTTLSDFRDHSFGKAYGVLIKD----LG--LLARAVFVIDENGKVI 123 (143)
T ss_pred hcCCCCceEeecCcccHHHHHhCCeecc----CC--ccceEEEEEcCCCeEE
Confidence 9986 569999986 9999999996432 12 3589999999999985
No 14
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=99.96 E-value=7e-29 Score=173.07 Aligned_cols=123 Identities=28% Similarity=0.485 Sum_probs=108.7
Q ss_pred CCCCCCCCceEEec-CCC---eeecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHH
Q 044272 4 LTIGDSVPNLQVQT-NQG---NFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHN 79 (133)
Q Consensus 4 l~~G~~~p~f~l~~-~~G---~~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~ 79 (133)
+.+|+++|+|++++ .+| +++|+++.+|+++||+||+++|||.|+.+++.|++++++|+++|++|++||.|+++..+
T Consensus 68 ~~vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~ 147 (261)
T PTZ00137 68 SLVGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHK 147 (261)
T ss_pred ccCCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHH
Confidence 57999999999987 455 48999986778999999999999999999999999999999999999999999998888
Q ss_pred HHHHh-------cCCCCceeeCCcHHHHHHcCCCCCCCCCCCCCCccceeEEEECCCCccC
Q 044272 80 EWIKD-------IEAYTPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVQ 133 (133)
Q Consensus 80 ~~~~~-------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~ 133 (133)
+|++. .+.++|+++|++.++++.||+..+ .| ...|++||||++|+|+
T Consensus 148 aw~~~~~~~~g~~~l~fPlLsD~~~~iakayGv~~~-----~g--~a~R~tFIID~dG~I~ 201 (261)
T PTZ00137 148 AWKELDVRQGGVSPLKFPLFSDISREVSKSFGLLRD-----EG--FSHRASVLVDKAGVVK 201 (261)
T ss_pred HHHhhhhhhccccCcceEEEEcCChHHHHHcCCCCc-----CC--ceecEEEEECCCCEEE
Confidence 88864 456679999999999999999642 13 4799999999999985
No 15
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.96 E-value=6e-29 Score=160.92 Aligned_cols=125 Identities=21% Similarity=0.436 Sum_probs=105.9
Q ss_pred CCCCCCCceEEec--CCC-eeecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHH
Q 044272 5 TIGDSVPNLQVQT--NQG-NFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEW 81 (133)
Q Consensus 5 ~~G~~~p~f~l~~--~~G-~~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~ 81 (133)
++|+++|+|++++ .+| +++|+++ +||+++|+||.+.|||.|+.+++.|.++++.++++++++++|+.++...+.+|
T Consensus 1 k~G~~~P~~~~~~~~~~g~~~~l~~~-~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~ 79 (146)
T PF08534_consen 1 KVGDKAPDFSLKDLDLDGKPVSLSDF-KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREF 79 (146)
T ss_dssp STTSB--CCEEEEEETTSEEEEGGGG-TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHH
T ss_pred CCCCCCCCeEEEeecCCCCEecHHHh-CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHH
Confidence 4899999999966 899 8999998 88999998885559999999999999999999999999999999877779999
Q ss_pred HHhcCCCCceeeCCcHHHHHHcCCCCCCCCCCCCCCccceeEEEECCCCccC
Q 044272 82 IKDIEAYTPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVQ 133 (133)
Q Consensus 82 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~ 133 (133)
+++++.+++++.|.+..+.+.|++...... ..| ..+|++||||++|+|+
T Consensus 80 ~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~~~--~~~P~~~lId~~G~V~ 128 (146)
T PF08534_consen 80 LKKYGINFPVLSDPDGALAKALGVTIMEDP-GNG--FGIPTTFLIDKDGKVV 128 (146)
T ss_dssp HHHTTTTSEEEEETTSHHHHHTTCEEECCT-TTT--SSSSEEEEEETTSBEE
T ss_pred HHhhCCCceEEechHHHHHHHhCCcccccc-ccC--CeecEEEEEECCCEEE
Confidence 999999999999999999999998421110 011 3799999999999985
No 16
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.96 E-value=1.2e-28 Score=163.94 Aligned_cols=121 Identities=28% Similarity=0.576 Sum_probs=106.7
Q ss_pred CCCCCCceEEecCCC-----eeecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHH
Q 044272 6 IGDSVPNLQVQTNQG-----NFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNE 80 (133)
Q Consensus 6 ~G~~~p~f~l~~~~G-----~~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~ 80 (133)
+|+++|+|++++.+| +++|+++ +|+++||+||+++||+.|..+++.|+++++++++.|+++++||.|+.+...+
T Consensus 1 vG~~aP~f~~~~~~g~~~~~~~~l~~~-~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~ 79 (173)
T cd03015 1 VGKKAPDFKATAVVPNGEFKEISLSDY-KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLA 79 (173)
T ss_pred CCCcCCCCEeecccCCCCceEEehHHh-CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHH
Confidence 599999999998765 6999999 7899999999999999999999999999999999999999999999887778
Q ss_pred HHHhc-------CCCCceeeCCcHHHHHHcCCCCCCCCCCCCCCccceeEEEECCCCccC
Q 044272 81 WIKDI-------EAYTPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVQ 133 (133)
Q Consensus 81 ~~~~~-------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~ 133 (133)
|.+.. +.++++++|+++++++.||+...+ .+ ...|++||||++|+|+
T Consensus 80 ~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~~----~~--~~~p~~~lID~~G~I~ 133 (173)
T cd03015 80 WRNTPRKEGGLGKINFPLLADPKKKISRDYGVLDEE----EG--VALRGTFIIDPEGIIR 133 (173)
T ss_pred HHHhhhhhCCccCcceeEEECCchhHHHHhCCcccc----CC--ceeeEEEEECCCCeEE
Confidence 87764 467799999999999999996533 12 4689999999999984
No 17
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.96 E-value=8.3e-29 Score=160.36 Aligned_cols=125 Identities=21% Similarity=0.409 Sum_probs=109.4
Q ss_pred CCCceEEecCCC-eeecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCC
Q 044272 9 SVPNLQVQTNQG-NFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEA 87 (133)
Q Consensus 9 ~~p~f~l~~~~G-~~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~ 87 (133)
.+|+|++++.+| +++++++.++++++|+||+++|||.|+.+++.|+++++++++.|+++++|+.|+.+...+|.++.+.
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~~ 80 (149)
T cd02970 1 TAPDFELPDAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKFL 80 (149)
T ss_pred CCCCccccCCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcCC
Confidence 479999999999 8999998556789999999999999999999999999999989999999999999988899999999
Q ss_pred CCceeeCCcHHHHHHcCCCCCCC-----------------CCCCCCCccceeEEEECCCCccC
Q 044272 88 YTPIIADPNREIIKQLNMVDPDE-----------------KDSSGKQLPSRALHIVGPDHQVQ 133 (133)
Q Consensus 88 ~~~~~~d~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~p~~~lid~~G~i~ 133 (133)
++|+++|++..+.+.||+..... ....+.....|++||||++|+|+
T Consensus 81 ~~p~~~D~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~ 143 (149)
T cd02970 81 PFPVYADPDRKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTIL 143 (149)
T ss_pred CCeEEECCchhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEE
Confidence 99999999999999999963221 11223335899999999999985
No 18
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=99.96 E-value=1.2e-28 Score=161.21 Aligned_cols=126 Identities=26% Similarity=0.419 Sum_probs=110.1
Q ss_pred CCCCCCceEEecCC---C-eeecccccCCCeEEEEEeeCCCCchhHHH-HHHHHhhhhHHHHcCc-eEEEEeCCCHHHHH
Q 044272 6 IGDSVPNLQVQTNQ---G-NFKLHDFIGDNWTIIFSHPGDFTPVCTTE-LGKMAAYVPEFDKREV-KLLGLSCDDVKSHN 79 (133)
Q Consensus 6 ~G~~~p~f~l~~~~---G-~~~l~d~~~~~~~vl~f~~~~~c~~C~~~-~~~l~~~~~~~~~~~v-~vv~is~d~~~~~~ 79 (133)
+|+++|+|++++.+ | +++|+++.+|+++||+||++.|||.|..+ ++.+++.+++++++|+ +|++||.|+++.++
T Consensus 1 vG~~aPdF~l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~ 80 (155)
T cd03013 1 VGDKLPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMK 80 (155)
T ss_pred CCCcCCCeEeeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHH
Confidence 59999999999985 7 79999943778999999999999999999 9999999999999999 69999999999999
Q ss_pred HHHHhcCC--CCceeeCCcHHHHHHcCCCCCCCCCCCCCCccceeEEEECCCCccC
Q 044272 80 EWIKDIEA--YTPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVQ 133 (133)
Q Consensus 80 ~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~ 133 (133)
+|+++++. ++++++|++.++++.||+...+.....+ ....+++|||| +|+|+
T Consensus 81 ~~~~~~~~~~~f~lLsD~~~~~~~~ygv~~~~~~~~~~-~~~~R~~fiId-~g~I~ 134 (155)
T cd03013 81 AWGKALGAKDKIRFLADGNGEFTKALGLTLDLSAAGGG-IRSKRYALIVD-DGKVK 134 (155)
T ss_pred HHHHhhCCCCcEEEEECCCHHHHHHcCCCccccccCCc-ceeeeEEEEEC-CCEEE
Confidence 99999997 7899999999999999998654321111 13689999999 69985
No 19
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.96 E-value=2.9e-28 Score=161.21 Aligned_cols=124 Identities=20% Similarity=0.292 Sum_probs=107.4
Q ss_pred CCCCCCCCceEEecCCC-eeecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHH
Q 044272 4 LTIGDSVPNLQVQTNQG-NFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWI 82 (133)
Q Consensus 4 l~~G~~~p~f~l~~~~G-~~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~ 82 (133)
+.+|+.+|+|++++.+| .++|+++ +||+++|+||++.|||.|+.+++.|++++++++ +++|++||.|+++.+++|+
T Consensus 18 ~~~G~~~P~f~l~~~~g~~v~l~~~-~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~--~~~vv~vs~D~~~~~~~f~ 94 (167)
T PRK00522 18 PQVGDKAPDFTLVANDLSDVSLADF-AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD--NTVVLCISADLPFAQKRFC 94 (167)
T ss_pred CCCCCCCCCeEEEcCCCcEEehHHh-CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC--CcEEEEEeCCCHHHHHHHH
Confidence 57899999999999999 7999999 788999999977779999999999999998883 8999999999999999999
Q ss_pred HhcCCC-CceeeCC-cHHHHHHcCCCCCCCCCCCCCCccceeEEEECCCCccC
Q 044272 83 KDIEAY-TPIIADP-NREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVQ 133 (133)
Q Consensus 83 ~~~~~~-~~~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~ 133 (133)
++++.. +++++|. .+.+++.||+...+. ...| ...|++||||++|+|+
T Consensus 95 ~~~~~~~~~~lsD~~~~~~~~~~gv~~~~~-~~~g--~~~r~tfvId~~G~I~ 144 (167)
T PRK00522 95 GAEGLENVITLSDFRDHSFGKAYGVAIAEG-PLKG--LLARAVFVLDENNKVV 144 (167)
T ss_pred HhCCCCCceEeecCCccHHHHHhCCeeccc-ccCC--ceeeEEEEECCCCeEE
Confidence 999987 5999994 559999999964321 1123 4788999999999985
No 20
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.96 E-value=5.3e-28 Score=155.24 Aligned_cols=121 Identities=33% Similarity=0.645 Sum_probs=108.8
Q ss_pred CCCceEEecCCC-eeecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhc-C
Q 044272 9 SVPNLQVQTNQG-NFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDI-E 86 (133)
Q Consensus 9 ~~p~f~l~~~~G-~~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~-~ 86 (133)
.+|+|++++.+| +++++++ +|++++|+||+++||+.|..++++|+++++++++.++++++||.|+++.+++|++++ +
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~-~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~ 79 (140)
T cd02971 1 KAPDFTLPATDGGEVSLSDF-KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGG 79 (140)
T ss_pred CCCCceeccCCCcEEehHHh-CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccC
Confidence 479999999999 8999999 889999999999999999999999999999998889999999999999999999999 8
Q ss_pred CCCceeeCCcHHHHHHcCCCCCCCCCCCCCCccceeEEEECCCCccC
Q 044272 87 AYTPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVQ 133 (133)
Q Consensus 87 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~ 133 (133)
.++++++|+++.+++.||+...... +.....|++||||++|+|+
T Consensus 80 ~~~~~l~D~~~~~~~~~g~~~~~~~---~~~~~~p~~~lid~~g~i~ 123 (140)
T cd02971 80 LNFPLLSDPDGEFAKAYGVLIEKSA---GGGLAARATFIIDPDGKIR 123 (140)
T ss_pred CCceEEECCChHHHHHcCCcccccc---ccCceeEEEEEECCCCcEE
Confidence 8889999999999999999754322 2224789999999999984
No 21
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=99.96 E-value=4e-28 Score=164.62 Aligned_cols=126 Identities=23% Similarity=0.470 Sum_probs=107.5
Q ss_pred CCCCCCCCCCCceEEec----CCC-eeecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCH
Q 044272 1 MPGLTIGDSVPNLQVQT----NQG-NFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDV 75 (133)
Q Consensus 1 m~~l~~G~~~p~f~l~~----~~G-~~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~ 75 (133)
|..+.+|+++|+|++.+ .+| +++|+++ +|++++|+||++.||++|+.++.+|++++++++++|++|++||.|+.
T Consensus 3 ~~~~~~G~~aPdF~~~~~~~~~~~~~v~l~d~-~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~ 81 (199)
T PTZ00253 3 CGDAKINHPAPSFEEVALMPNGSFKKISLSSY-KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSE 81 (199)
T ss_pred ccccccCCcCCCCEeeccccCCCCcEEeHHHH-CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCH
Confidence 44578999999999765 455 7999999 78999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHhc-------CCCCceeeCCcHHHHHHcCCCCCCCCCCCCCCccceeEEEECCCCccC
Q 044272 76 KSHNEWIKDI-------EAYTPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVQ 133 (133)
Q Consensus 76 ~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~ 133 (133)
....+|.... +.++|+++|+++++++.||+...+ .| ...|++||||++|+|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~~ygv~~~~----~g--~~~r~~fiID~~G~i~ 140 (199)
T PTZ00253 82 YAHLQWTLQERKKGGLGTMAIPMLADKTKSIARSYGVLEEE----QG--VAYRGLFIIDPKGMLR 140 (199)
T ss_pred HHHHHHHhChHhhCCccccccceEECcHhHHHHHcCCcccC----CC--ceEEEEEEECCCCEEE
Confidence 8877775321 356799999999999999996432 12 3679999999999975
No 22
>PRK15000 peroxidase; Provisional
Probab=99.96 E-value=4.8e-28 Score=164.11 Aligned_cols=123 Identities=28% Similarity=0.472 Sum_probs=104.8
Q ss_pred CCCCCCCceEEecC--CC-e---eecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHH
Q 044272 5 TIGDSVPNLQVQTN--QG-N---FKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSH 78 (133)
Q Consensus 5 ~~G~~~p~f~l~~~--~G-~---~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~ 78 (133)
.+|+++|+|++++. +| . ++++++.+|+++||+||++.||+.|+.++++|++++++|+++|++|++||.|+.+..
T Consensus 3 ~vg~~aPdF~~~~~~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~ 82 (200)
T PRK15000 3 LVTRQAPDFTAAAVLGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVH 82 (200)
T ss_pred cCCCcCCCCEeecccCCCceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHH
Confidence 48999999999986 34 3 355665468899999999999999999999999999999999999999999999988
Q ss_pred HHHHHh----cC---CCCceeeCCcHHHHHHcCCCCCCCCCCCCCCccceeEEEECCCCccC
Q 044272 79 NEWIKD----IE---AYTPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVQ 133 (133)
Q Consensus 79 ~~~~~~----~~---~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~ 133 (133)
++|.+. .+ .++|+++|++.++++.||+..++ .| ...|++||||++|+|+
T Consensus 83 ~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ygv~~~~----~g--~~~r~tfiID~~G~I~ 138 (200)
T PRK15000 83 NAWRNTPVDKGGIGPVKYAMVADVKREIQKAYGIEHPD----EG--VALRGSFLIDANGIVR 138 (200)
T ss_pred HHHHhhHHHhCCccccCceEEECCCcHHHHHcCCccCC----CC--cEEeEEEEECCCCEEE
Confidence 888654 33 36799999999999999996533 23 4799999999999985
No 23
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.2e-27 Score=157.76 Aligned_cols=123 Identities=35% Similarity=0.642 Sum_probs=111.0
Q ss_pred CCCCCCCCceEEecC-CC----eeecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHH
Q 044272 4 LTIGDSVPNLQVQTN-QG----NFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSH 78 (133)
Q Consensus 4 l~~G~~~p~f~l~~~-~G----~~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~ 78 (133)
+.+|+++|+|++... .| +++++++ .|+|+||+||++.+.++|+.++..+++.+++|+++|++|++||.|+..+.
T Consensus 3 ~lIg~~aP~F~~~a~~~~~~~~~i~l~d~-~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fsH 81 (194)
T COG0450 3 SLIGKKAPDFTANAVLGGEIFEEITLSDY-YGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFSH 81 (194)
T ss_pred cccCCcCCCcEEEEEecCceeeEEechhh-cCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHHH
Confidence 679999999999887 66 6999998 45999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh----cC---CCCceeeCCcHHHHHHcCCCCCCCCCCCCCCccceeEEEECCCCccC
Q 044272 79 NEWIKD----IE---AYTPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVQ 133 (133)
Q Consensus 79 ~~~~~~----~~---~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~ 133 (133)
.+|... .+ .++|+++|.+.++++.||+..++ .| ...+++|||||+|+||
T Consensus 82 ~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ygvl~~~----~g--~a~R~~FIIDp~g~ir 137 (194)
T COG0450 82 KAWKATIREAGGIGKIKFPMIADPKGEIARAYGVLHPE----EG--LALRGTFIIDPDGVIR 137 (194)
T ss_pred HHHHhcHHhcCCccceecceEEcCchhHHHHcCCcccC----CC--cceeEEEEECCCCeEE
Confidence 999887 44 34599999999999999997654 33 4899999999999985
No 24
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.94 E-value=4.4e-26 Score=151.23 Aligned_cols=114 Identities=14% Similarity=0.309 Sum_probs=103.3
Q ss_pred CCCCCceEEecCCC-eeecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCC--------CHHH
Q 044272 7 GDSVPNLQVQTNQG-NFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCD--------DVKS 77 (133)
Q Consensus 7 G~~~p~f~l~~~~G-~~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d--------~~~~ 77 (133)
|+.+|+|++.+.+| +++++++.+++++||+|| ++|||.|..++++|++++++++++++++++|+.| +.+.
T Consensus 1 g~~~p~f~l~~~~g~~v~l~~~~~~k~~ll~f~-~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~ 79 (171)
T cd02969 1 GSPAPDFSLPDTDGKTYSLADFADGKALVVMFI-CNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPEN 79 (171)
T ss_pred CCcCCCccccCCCCCEEeHHHHhCCCEEEEEEE-CCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHH
Confidence 78999999999999 899999856677777776 8899999999999999999999889999999986 4688
Q ss_pred HHHHHHhcCCCCceeeCCcHHHHHHcCCCCCCCCCCCCCCccceeEEEECCCCccC
Q 044272 78 HNEWIKDIEAYTPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVQ 133 (133)
Q Consensus 78 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~ 133 (133)
+++|+++++.+++++.|.+..+.+.||+ ...|.+||||++|+|+
T Consensus 80 ~~~~~~~~~~~~~~l~D~~~~~~~~~~v------------~~~P~~~lid~~G~v~ 123 (171)
T cd02969 80 MKAKAKEHGYPFPYLLDETQEVAKAYGA------------ACTPDFFLFDPDGKLV 123 (171)
T ss_pred HHHHHHHCCCCceEEECCchHHHHHcCC------------CcCCcEEEECCCCeEE
Confidence 9999999999999999999999999999 4679999999999984
No 25
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.93 E-value=3.9e-26 Score=148.89 Aligned_cols=122 Identities=16% Similarity=0.219 Sum_probs=93.5
Q ss_pred CCCceEEecCCC-eeecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeC--------CCHHHHH
Q 044272 9 SVPNLQVQTNQG-NFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSC--------DDVKSHN 79 (133)
Q Consensus 9 ~~p~f~l~~~~G-~~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~--------d~~~~~~ 79 (133)
.+|+|++++.+| +++|+++ +||+++|+|| ++||+ |+.+++.|++++++++++|+++++|+. ++.+.++
T Consensus 1 ~~~~f~l~d~~G~~v~l~~~-~Gk~vvl~fw-atwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~ 77 (152)
T cd00340 1 SIYDFSVKDIDGEPVSLSKY-KGKVLLIVNV-ASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIK 77 (152)
T ss_pred CcceeEEECCCCCEEeHHHh-CCCEEEEEEE-cCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHH
Confidence 379999999999 8999999 7888777776 99999 999999999999999988999999986 3478899
Q ss_pred HHHHh-cCCCCceeeCC--cHH-HHHHcCCCCCCCCCC-CCCCccceeEEEECCCCccC
Q 044272 80 EWIKD-IEAYTPIIADP--NRE-IIKQLNMVDPDEKDS-SGKQLPSRALHIVGPDHQVQ 133 (133)
Q Consensus 80 ~~~~~-~~~~~~~~~d~--~~~-~~~~~~~~~~~~~~~-~~~~~~~p~~~lid~~G~i~ 133 (133)
+|+++ ++.++|++.|. ++. ....|+......+.. .+...+.+++||||++|+|+
T Consensus 78 ~f~~~~~~~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~ 136 (152)
T cd00340 78 EFCETNYGVTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVV 136 (152)
T ss_pred HHHHHhcCCCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEE
Confidence 99987 78889999763 332 344555321111100 01112466999999999984
No 26
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.93 E-value=2.9e-25 Score=150.48 Aligned_cols=126 Identities=11% Similarity=0.137 Sum_probs=95.6
Q ss_pred CCCCCCCceEEecCCC-eeecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeC--------CCH
Q 044272 5 TIGDSVPNLQVQTNQG-NFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSC--------DDV 75 (133)
Q Consensus 5 ~~G~~~p~f~l~~~~G-~~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~--------d~~ 75 (133)
.+|..+|+|++++.+| +++|+++ +|++++|+|| ++||+.|+.+++.|++++++++++|++||+|+. |+.
T Consensus 14 ~~~~~~pdf~l~d~~G~~vsL~~~-kGkvvlv~fw-AswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~ 91 (199)
T PTZ00056 14 ELRKSIYDYTVKTLEGTTVPMSSL-KNKVLMITNS-ASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNT 91 (199)
T ss_pred hcCCCCCceEEECCCCCEEeHHHh-CCCEEEEEEE-CCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCH
Confidence 5788999999999999 8999999 7887766665 899999999999999999999999999999995 578
Q ss_pred HHHHHHHHhcCCCCceeeCC------cHHHHHHcC----CCCCCCCCCCCCCccceeEEEECCCCccC
Q 044272 76 KSHNEWIKDIEAYTPIIADP------NREIIKQLN----MVDPDEKDSSGKQLPSRALHIVGPDHQVQ 133 (133)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~d~------~~~~~~~~~----~~~~~~~~~~~~~~~~p~~~lid~~G~i~ 133 (133)
+.+++|+++++.++|++.|. ...+.+.+. ..........+ ....+++||||++|+|+
T Consensus 92 e~~~~f~~~~~~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~-i~~~~~tflID~~G~iv 158 (199)
T PTZ00056 92 KDIRKFNDKNKIKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKA-IGWNFGKFLVNKSGNVV 158 (199)
T ss_pred HHHHHHHHHcCCCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCc-cCCCCEEEEECCCCcEE
Confidence 89999999999999988752 223332221 10000000001 01235899999999984
No 27
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.93 E-value=8.5e-25 Score=144.99 Aligned_cols=117 Identities=17% Similarity=0.387 Sum_probs=107.0
Q ss_pred CCCCCCCCCceEEecCCC-eeecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCC-CHHHHHH
Q 044272 3 GLTIGDSVPNLQVQTNQG-NFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCD-DVKSHNE 80 (133)
Q Consensus 3 ~l~~G~~~p~f~l~~~~G-~~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d-~~~~~~~ 80 (133)
.+.+|+.+|+|++.+.+| .++++++ ++++++|+|| ++||+.|+.+++.|++++++++++++++++|+.| +.+...+
T Consensus 34 ~~~~g~~~p~~~~~~~~g~~~~l~~~-~~k~~~l~f~-a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~ 111 (173)
T PRK03147 34 KVQVGKEAPNFVLTDLEGKKIELKDL-KGKGVFLNFW-GTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKN 111 (173)
T ss_pred ccCCCCCCCCcEeecCCCCEEeHHHc-CCCEEEEEEE-CCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHH
Confidence 468899999999999999 8999998 7788888887 8999999999999999999999888999999997 5678899
Q ss_pred HHHhcCCCCceeeCCcHHHHHHcCCCCCCCCCCCCCCccceeEEEECCCCccC
Q 044272 81 WIKDIEAYTPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVQ 133 (133)
Q Consensus 81 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~ 133 (133)
|.++++.+++++.|.+..+.+.||+ ...|++|+||++|+|+
T Consensus 112 ~~~~~~~~~~~~~d~~~~~~~~~~v------------~~~P~~~lid~~g~i~ 152 (173)
T PRK03147 112 FVNRYGLTFPVAIDKGRQVIDAYGV------------GPLPTTFLIDKDGKVV 152 (173)
T ss_pred HHHHhCCCceEEECCcchHHHHcCC------------CCcCeEEEECCCCcEE
Confidence 9999999999999999999999999 3689999999999974
No 28
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.93 E-value=3.9e-25 Score=140.00 Aligned_cols=99 Identities=11% Similarity=0.151 Sum_probs=90.9
Q ss_pred eeecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeC------CCHHHHHHHHHhcCCCCceeeC
Q 044272 21 NFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSC------DDVKSHNEWIKDIEAYTPIIAD 94 (133)
Q Consensus 21 ~~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~------d~~~~~~~~~~~~~~~~~~~~d 94 (133)
+++++++ +|+++||+|| ++||+.|+.+++.|++++++++++++++++|+. ++.+.+++|+++++.+++++.|
T Consensus 15 ~v~l~~~-~gk~vvl~F~-a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D 92 (126)
T cd03012 15 PLSLAQL-RGKVVLLDFW-TYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVAND 92 (126)
T ss_pred ccCHHHh-CCCEEEEEEE-CCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEEC
Confidence 7999999 8888888876 889999999999999999999988999999986 4688999999999999999999
Q ss_pred CcHHHHHHcCCCCCCCCCCCCCCccceeEEEECCCCccC
Q 044272 95 PNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVQ 133 (133)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~ 133 (133)
++..+.+.|++ ..+|++||||++|+|+
T Consensus 93 ~~~~~~~~~~v------------~~~P~~~vid~~G~v~ 119 (126)
T cd03012 93 NDYATWRAYGN------------QYWPALYLIDPTGNVR 119 (126)
T ss_pred CchHHHHHhCC------------CcCCeEEEECCCCcEE
Confidence 99999999999 4689999999999985
No 29
>PLN02412 probable glutathione peroxidase
Probab=99.93 E-value=4e-25 Score=146.17 Aligned_cols=126 Identities=11% Similarity=0.195 Sum_probs=96.2
Q ss_pred CCCCCCceEEecCCC-eeecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCC--------CHH
Q 044272 6 IGDSVPNLQVQTNQG-NFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCD--------DVK 76 (133)
Q Consensus 6 ~G~~~p~f~l~~~~G-~~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d--------~~~ 76 (133)
..+.+|+|++++.+| +++|+++ +|+++||+|| ++||+.|..+++.|++++++|+++|+.|++||.| +.+
T Consensus 5 ~~~~~pdf~l~d~~G~~v~l~~~-~gk~vlv~f~-a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~ 82 (167)
T PLN02412 5 SPKSIYDFTVKDIGGNDVSLNQY-KGKVLLIVNV-ASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNE 82 (167)
T ss_pred cCCCCCceEEECCCCCEEeHHHh-CCCEEEEEEe-CCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHH
Confidence 447899999999999 8999999 7887777777 9999999999999999999999999999999963 454
Q ss_pred HHH-HHHHhcCCCCceeeC--CcH-HHHHHcCCCCCCCCCCCCCC-ccceeEEEECCCCccC
Q 044272 77 SHN-EWIKDIEAYTPIIAD--PNR-EIIKQLNMVDPDEKDSSGKQ-LPSRALHIVGPDHQVQ 133 (133)
Q Consensus 77 ~~~-~~~~~~~~~~~~~~d--~~~-~~~~~~~~~~~~~~~~~~~~-~~~p~~~lid~~G~i~ 133 (133)
.+. .|+++++.++|++.| .++ .....|+....+.....+.. ...|++||||++|+|+
T Consensus 83 ~~~~~~~~~~~~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv 144 (167)
T PLN02412 83 EIQQTVCTRFKAEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVV 144 (167)
T ss_pred HHHHHHHHccCCCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEE
Confidence 544 457888999999873 443 55566654322111111111 2378999999999984
No 30
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.92 E-value=8.4e-25 Score=150.86 Aligned_cols=127 Identities=13% Similarity=0.212 Sum_probs=98.6
Q ss_pred CCCCCCCceEEecCCC-eeecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeC--------CCH
Q 044272 5 TIGDSVPNLQVQTNQG-NFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSC--------DDV 75 (133)
Q Consensus 5 ~~G~~~p~f~l~~~~G-~~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~--------d~~ 75 (133)
..|+.+|+|+++|.+| .++|+++ +|+++||+|| ++||+.|..++++|++++++++++|++||+|+. ++.
T Consensus 74 ~~g~~aPdF~l~d~~G~~vsLsd~-kGK~vvl~Fw-AswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~ 151 (236)
T PLN02399 74 ATEKSVHDFTVKDIDGKDVALSKF-KGKVLLIVNV-ASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSN 151 (236)
T ss_pred hcCCCCCceEEECCCCCEEeHHHh-CCCeEEEEEE-cCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCH
Confidence 4789999999999999 8999999 7888888877 999999999999999999999999999999996 456
Q ss_pred HHHHHHH-HhcCCCCceeeC--CcH-HHHHHcCCCCCCCCCCCC-CCccceeEEEECCCCccC
Q 044272 76 KSHNEWI-KDIEAYTPIIAD--PNR-EIIKQLNMVDPDEKDSSG-KQLPSRALHIVGPDHQVQ 133 (133)
Q Consensus 76 ~~~~~~~-~~~~~~~~~~~d--~~~-~~~~~~~~~~~~~~~~~~-~~~~~p~~~lid~~G~i~ 133 (133)
+.+++|+ ++++..+|++.| .++ .+...|+..........| .....|++||||++|+|+
T Consensus 152 ~ei~~f~~~~~g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv 214 (236)
T PLN02399 152 PEIKQFACTRFKAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVV 214 (236)
T ss_pred HHHHHHHHHhcCCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEE
Confidence 7888997 688988998854 333 444455432100000001 112579999999999984
No 31
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.92 E-value=2e-24 Score=145.42 Aligned_cols=113 Identities=16% Similarity=0.197 Sum_probs=96.4
Q ss_pred CCCCCCCCCceEEecCCC-eeecc--cccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHH
Q 044272 3 GLTIGDSVPNLQVQTNQG-NFKLH--DFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHN 79 (133)
Q Consensus 3 ~l~~G~~~p~f~l~~~~G-~~~l~--d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~ 79 (133)
++.+|+++|+|+++|.+| +++++ ++ +|++++|+|| ++|||.|+.++|.+.+++++ .++.+++||.|+++.+.
T Consensus 45 ~~~vG~~aP~f~l~d~~G~~v~l~~~~~-~gk~vvl~F~-atwCp~C~~~lp~l~~~~~~---~~~~vv~Is~~~~~~~~ 119 (189)
T TIGR02661 45 GPDVGDAAPIFNLPDFDGEPVRIGGSIA-PGRPTLLMFT-APSCPVCDKLFPIIKSIARA---EETDVVMISDGTPAEHR 119 (189)
T ss_pred CCCCCCcCCCcEecCCCCCEEeccchhc-CCCEEEEEEE-CCCChhHHHHHHHHHHHHHh---cCCcEEEEeCCCHHHHH
Confidence 368999999999999999 89995 45 7788888876 99999999999999987643 47889999999999999
Q ss_pred HHHHhcCCCCceeeCCcHHHHHHcCCCCCCCCCCCCCCccceeEEEECCCCccC
Q 044272 80 EWIKDIEAYTPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVQ 133 (133)
Q Consensus 80 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~ 133 (133)
+|+++++.+++.+. .++++.+.|++ ...|++|+||++|+|+
T Consensus 120 ~~~~~~~~~~~~~~-~~~~i~~~y~v------------~~~P~~~lID~~G~I~ 160 (189)
T TIGR02661 120 RFLKDHELGGERYV-VSAEIGMAFQV------------GKIPYGVLLDQDGKIR 160 (189)
T ss_pred HHHHhcCCCcceee-chhHHHHhccC------------CccceEEEECCCCeEE
Confidence 99999998775443 46788899998 3689999999999984
No 32
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.92 E-value=2e-24 Score=138.92 Aligned_cols=123 Identities=15% Similarity=0.209 Sum_probs=101.5
Q ss_pred CCCceEEecCCC-eeecccccCCCeEEEEEeeCCCCch-hHHHHHHHHhhhhHHHHcC---ceEEEEeCC----CHHHHH
Q 044272 9 SVPNLQVQTNQG-NFKLHDFIGDNWTIIFSHPGDFTPV-CTTELGKMAAYVPEFDKRE---VKLLGLSCD----DVKSHN 79 (133)
Q Consensus 9 ~~p~f~l~~~~G-~~~l~d~~~~~~~vl~f~~~~~c~~-C~~~~~~l~~~~~~~~~~~---v~vv~is~d----~~~~~~ 79 (133)
.+|+|++++.+| +++++++ +|++++|+|| ++||+. |..+++.|+++++++++++ +++++||.| +++.++
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~-~gk~~vl~f~-~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~ 78 (142)
T cd02968 1 IGPDFTLTDQDGRPVTLSDL-KGKPVLVYFG-YTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLK 78 (142)
T ss_pred CCCceEEEcCCCCEEchHHh-CCCEEEEEEE-cCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHH
Confidence 479999999999 8999999 8888888877 788996 9999999999999998765 999999974 568899
Q ss_pred HHHHhcCCCCceeeCCc---HHHHHHcCCCCCCCCC--CCCCCccceeEEEECCCCccC
Q 044272 80 EWIKDIEAYTPIIADPN---REIIKQLNMVDPDEKD--SSGKQLPSRALHIVGPDHQVQ 133 (133)
Q Consensus 80 ~~~~~~~~~~~~~~d~~---~~~~~~~~~~~~~~~~--~~~~~~~~p~~~lid~~G~i~ 133 (133)
+|+++++.+++++.|+. ..+.+.||+....... ......+.|.+||||++|+|+
T Consensus 79 ~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~ 137 (142)
T cd02968 79 AYAKAFGPGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLV 137 (142)
T ss_pred HHHHHhCCCcEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEE
Confidence 99999998889999875 6889999986432110 011123789999999999985
No 33
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.92 E-value=3.3e-24 Score=143.71 Aligned_cols=128 Identities=12% Similarity=0.199 Sum_probs=92.9
Q ss_pred CCCCCCCceEEecCCC-eeecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCC--------CH
Q 044272 5 TIGDSVPNLQVQTNQG-NFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCD--------DV 75 (133)
Q Consensus 5 ~~G~~~p~f~l~~~~G-~~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d--------~~ 75 (133)
..+..+|+|++++.+| +++|+++ +|++++|+|+|++|||.|+.+++.|++++++++++|+.|++||.| +.
T Consensus 15 ~~~~~~p~f~l~d~~G~~vsLs~~-~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~ 93 (183)
T PTZ00256 15 PPTKSFFEFEAIDIDGQLVQLSKF-KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDE 93 (183)
T ss_pred CCCCcccceEeEcCCCCEEeHHHh-CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCH
Confidence 3467899999999999 8999999 788766655569999999999999999999999999999999963 34
Q ss_pred HHHHHHHH-hcCCCCceeeC--CcHHH-HHHcCCCCCCCCC---CCCCCccce---eEEEECCCCccC
Q 044272 76 KSHNEWIK-DIEAYTPIIAD--PNREI-IKQLNMVDPDEKD---SSGKQLPSR---ALHIVGPDHQVQ 133 (133)
Q Consensus 76 ~~~~~~~~-~~~~~~~~~~d--~~~~~-~~~~~~~~~~~~~---~~~~~~~~p---~~~lid~~G~i~ 133 (133)
+...+|.. +++.++|++.| .++.. .+.|+........ ..+....+| ++||||++|+|+
T Consensus 94 ~~~~~f~~~~~~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv 161 (183)
T PTZ00256 94 PEIKEYVQKKFNVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVV 161 (183)
T ss_pred HHHHHHHHHhcCCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEE
Confidence 67778864 78888998865 33322 2333221111000 001112455 579999999984
No 34
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.92 E-value=1.8e-24 Score=145.21 Aligned_cols=113 Identities=12% Similarity=0.309 Sum_probs=95.7
Q ss_pred CCCCCCCCceEEecCC--C-eeecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCC-CHHHHH
Q 044272 4 LTIGDSVPNLQVQTNQ--G-NFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCD-DVKSHN 79 (133)
Q Consensus 4 l~~G~~~p~f~l~~~~--G-~~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d-~~~~~~ 79 (133)
..+|+++|+|++++.+ | .++++++.+|++++|+|| ++||+.|+.++|.|.++. +++++|++|+.| +.+...
T Consensus 39 ~~~g~~~p~f~l~~~~g~g~~~~~~~~~~gk~vvv~Fw-atwC~~C~~e~p~l~~l~----~~~~~vi~v~~~~~~~~~~ 113 (185)
T PRK15412 39 ALIGKPVPKFRLESLENPGQFYQADVLTQGKPVLLNVW-ATWCPTCRAEHQYLNQLS----AQGIRVVGMNYKDDRQKAI 113 (185)
T ss_pred hhcCCCCCCcCCccCCCCCccccHHHhcCCCEEEEEEE-CCCCHHHHHHHHHHHHHH----HcCCEEEEEECCCCHHHHH
Confidence 4578999999999987 4 466666546788888887 999999999999998764 358999999974 678889
Q ss_pred HHHHhcCCCCc-eeeCCcHHHHHHcCCCCCCCCCCCCCCccceeEEEECCCCccC
Q 044272 80 EWIKDIEAYTP-IIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVQ 133 (133)
Q Consensus 80 ~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~ 133 (133)
+|.++++.+++ ++.|+++.+.+.||+ ..+|++|+||++|+|+
T Consensus 114 ~~~~~~~~~~~~~~~D~~~~~~~~~gv------------~~~P~t~vid~~G~i~ 156 (185)
T PRK15412 114 SWLKELGNPYALSLFDGDGMLGLDLGV------------YGAPETFLIDGNGIIR 156 (185)
T ss_pred HHHHHcCCCCceEEEcCCccHHHhcCC------------CcCCeEEEECCCceEE
Confidence 99999999886 588999999999998 4689999999999984
No 35
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.91 E-value=6e-24 Score=141.30 Aligned_cols=114 Identities=16% Similarity=0.306 Sum_probs=95.3
Q ss_pred CCCCCCCCCceEEecCCC-e--eecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCC-CHHHH
Q 044272 3 GLTIGDSVPNLQVQTNQG-N--FKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCD-DVKSH 78 (133)
Q Consensus 3 ~l~~G~~~p~f~l~~~~G-~--~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d-~~~~~ 78 (133)
...+|.++|+|++++.+| . ++++++.+|++++|+|| ++||+.|+.+++.++++. ++++++++|+.+ +.+..
T Consensus 33 ~~~vG~~ap~f~l~~~~G~~~~~~~~~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~----~~~~~vi~V~~~~~~~~~ 107 (173)
T TIGR00385 33 SALIGKPVPAFPLAALREPLQAYTPEAFIQGKPVLLNVW-ASWCPPCRAEHPYLNELA----KDGLPIVGVDYKDQSQNA 107 (173)
T ss_pred chhcCCCCCCccccccCCCCcccCHHHhcCCCEEEEEEE-CCcCHHHHHHHHHHHHHH----HcCCEEEEEECCCChHHH
Confidence 356799999999999988 3 55567656787888877 999999999999988764 357999999985 56667
Q ss_pred HHHHHhcCCCCc-eeeCCcHHHHHHcCCCCCCCCCCCCCCccceeEEEECCCCccC
Q 044272 79 NEWIKDIEAYTP-IIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVQ 133 (133)
Q Consensus 79 ~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~ 133 (133)
.+|+++++.+++ ++.|+++.+.+.|++ ..+|++|+||++|+|+
T Consensus 108 ~~~~~~~~~~f~~v~~D~~~~~~~~~~v------------~~~P~~~~id~~G~i~ 151 (173)
T TIGR00385 108 LKFLKELGNPYQAILIDPNGKLGLDLGV------------YGAPETFLVDGNGVIL 151 (173)
T ss_pred HHHHHHcCCCCceEEECCCCchHHhcCC------------eeCCeEEEEcCCceEE
Confidence 889999998885 678999999999999 3589999999999984
No 36
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.91 E-value=4e-24 Score=139.53 Aligned_cols=113 Identities=12% Similarity=0.221 Sum_probs=90.2
Q ss_pred CCceEEecCCC-eeecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeC--------CCHHHHHH
Q 044272 10 VPNLQVQTNQG-NFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSC--------DDVKSHNE 80 (133)
Q Consensus 10 ~p~f~l~~~~G-~~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~--------d~~~~~~~ 80 (133)
+-+|++++.+| +++|+++ +||++||+|| ++|||.|..+++.|++++++++++|+.|++|+. |+.+.+++
T Consensus 2 ~~~f~l~~~~G~~~~l~~~-~Gk~vvv~~~-as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~ 79 (153)
T TIGR02540 2 FYSFEVKDARGRTVSLEKY-RGKVSLVVNV-ASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIES 79 (153)
T ss_pred cccceeECCCCCEecHHHh-CCCEEEEEEe-CCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHH
Confidence 45899999999 8999999 7888777765 999999999999999999999999999999994 67889999
Q ss_pred HHHh-cCCCCceeeCC-----cHHHHHHcCCCCCCCCCCCCCCcccee----EEEECCCCccC
Q 044272 81 WIKD-IEAYTPIIADP-----NREIIKQLNMVDPDEKDSSGKQLPSRA----LHIVGPDHQVQ 133 (133)
Q Consensus 81 ~~~~-~~~~~~~~~d~-----~~~~~~~~~~~~~~~~~~~~~~~~~p~----~~lid~~G~i~ 133 (133)
|+++ ++.++|++.|. +......|.+... ...|+ +||||++|+|+
T Consensus 80 f~~~~~~~~fp~~~d~~~~~~~~~~~~~~~~~~~---------~~~p~~~~~tflID~~G~v~ 133 (153)
T TIGR02540 80 FARRNYGVTFPMFSKIKILGSEAEPAFRFLVDSS---------KKEPRWNFWKYLVNPEGQVV 133 (153)
T ss_pred HHHHhcCCCCCccceEecCCCCCCcHHHHHHhcC---------CCCCCCccEEEEEcCCCcEE
Confidence 9986 89999998762 2222223333211 12454 99999999985
No 37
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.91 E-value=1.7e-23 Score=130.00 Aligned_cols=107 Identities=13% Similarity=0.156 Sum_probs=91.4
Q ss_pred CceEEecCCC-eeecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCC-
Q 044272 11 PNLQVQTNQG-NFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAY- 88 (133)
Q Consensus 11 p~f~l~~~~G-~~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~- 88 (133)
|+|++++.+| .++|+++.+|++++|+|| ++||+.|+.+++.+.++++.++ .++.+++++.++.+..++++++++..
T Consensus 1 p~f~l~~~~G~~~~l~~~~~gk~vvl~F~-~~wC~~C~~~~p~l~~~~~~~~-~~~~vi~v~~~~~~~~~~~~~~~~~~~ 78 (114)
T cd02967 1 PTFDLTTIDGAPVRIGGISPGRPTLLFFL-SPTCPVCKKLLPVIRSIARAEA-DWLDVVLASDGEKAEHQRFLKKHGLEA 78 (114)
T ss_pred CCceeecCCCCEEEcccccCCCeEEEEEE-CCCCcchHhHhHHHHHHHHHhc-CCcEEEEEeCCCHHHHHHHHHHhCCCC
Confidence 7999999999 899999832788888876 9999999999999999877764 36888889877889999999999985
Q ss_pred CceeeCCcHHHHHHcCCCCCCCCCCCCCCccceeEEEECCCCccC
Q 044272 89 TPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVQ 133 (133)
Q Consensus 89 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~ 133 (133)
+|.+.+ ..+.+.|++ ..+|++|+||++|+|+
T Consensus 79 ~p~~~~--~~~~~~~~~------------~~~P~~~vid~~G~v~ 109 (114)
T cd02967 79 FPYVLS--AELGMAYQV------------SKLPYAVLLDEAGVIA 109 (114)
T ss_pred CcEEec--HHHHhhcCC------------CCcCeEEEECCCCeEE
Confidence 687763 568889998 3689999999999984
No 38
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.91 E-value=1.1e-23 Score=133.36 Aligned_cols=108 Identities=13% Similarity=0.232 Sum_probs=94.7
Q ss_pred CCCceEEecCCC---eeecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeC-CCHHHHHHHHHh
Q 044272 9 SVPNLQVQTNQG---NFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSC-DDVKSHNEWIKD 84 (133)
Q Consensus 9 ~~p~f~l~~~~G---~~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~-d~~~~~~~~~~~ 84 (133)
++|+|++++.+| +++++++ +|++++|.|| ++|||.|+.+++.|+++.+++ ++++++|+. ++.+.+++|+++
T Consensus 2 ~~p~f~~~~~~g~~~~~~~~~~-~gk~vvv~F~-a~~C~~C~~~~~~l~~l~~~~---~~~vv~v~~~~~~~~~~~~~~~ 76 (127)
T cd03010 2 PAPAFSLPALPGPDKTLTSADL-KGKPYLLNVW-ASWCAPCREEHPVLMALARQG---RVPIYGINYKDNPENALAWLAR 76 (127)
T ss_pred CCCCcccccccCCCccccHHHc-CCCEEEEEEE-cCcCHHHHHHHHHHHHHHHhc---CcEEEEEECCCCHHHHHHHHHh
Confidence 689999999876 3899999 7888888887 999999999999999986553 599999996 578899999999
Q ss_pred cCCCC-ceeeCCcHHHHHHcCCCCCCCCCCCCCCccceeEEEECCCCccC
Q 044272 85 IEAYT-PIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVQ 133 (133)
Q Consensus 85 ~~~~~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~ 133 (133)
++.++ +++.|.++.+.+.|++ ..+|++|+||++|+|+
T Consensus 77 ~~~~~~~~~~D~~~~~~~~~~v------------~~~P~~~~ld~~G~v~ 114 (127)
T cd03010 77 HGNPYAAVGFDPDGRVGIDLGV------------YGVPETFLIDGDGIIR 114 (127)
T ss_pred cCCCCceEEECCcchHHHhcCC------------CCCCeEEEECCCceEE
Confidence 99888 5778999999999999 4689999999999974
No 39
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.89 E-value=9.1e-23 Score=131.51 Aligned_cols=98 Identities=16% Similarity=0.276 Sum_probs=82.7
Q ss_pred eecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHc-------CceEEEEeCC-CHHHHHHHHHhcCCCC---c
Q 044272 22 FKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKR-------EVKLLGLSCD-DVKSHNEWIKDIEAYT---P 90 (133)
Q Consensus 22 ~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~-------~v~vv~is~d-~~~~~~~~~~~~~~~~---~ 90 (133)
++|+++ +|++++|+|| ++|||.|+.++|.|.+++++++++ ++.+|+||.| +.+...+|.++++..+ +
T Consensus 18 ~~ls~~-kgk~vlL~Fw-AsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p 95 (146)
T cd03008 18 EIVARL-ENRVLLLFFG-AVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLP 95 (146)
T ss_pred ccHHHh-CCCEEEEEEE-CCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeec
Confidence 688999 8888888887 999999999999999999888753 6999999998 4566889999998665 4
Q ss_pred eeeCCcHHHHHHcCCCCCCCCCCCCCCccceeEEEECCCCccC
Q 044272 91 IIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVQ 133 (133)
Q Consensus 91 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~ 133 (133)
+..+....+.+.|++ ..+|++||||++|+|+
T Consensus 96 ~~~~~~~~l~~~y~v------------~~iPt~vlId~~G~Vv 126 (146)
T cd03008 96 FEDEFRRELEAQFSV------------EELPTVVVLKPDGDVL 126 (146)
T ss_pred ccchHHHHHHHHcCC------------CCCCEEEEECCCCcEE
Confidence 444445689999999 4699999999999984
No 40
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.5e-22 Score=131.15 Aligned_cols=133 Identities=55% Similarity=1.022 Sum_probs=118.9
Q ss_pred CCCCCCCCCCCceEEecCCCeeecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHH
Q 044272 1 MPGLTIGDSVPNLQVQTNQGNFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNE 80 (133)
Q Consensus 1 m~~l~~G~~~p~f~l~~~~G~~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~ 80 (133)
|++|+.|+.+|+|+..+..|.+.+.|+.++.|.||+-.++.+.|+|+.++..++.+..+|+++|++.+++|.|+.++...
T Consensus 3 ~~~l~lgd~~PNfea~Tt~g~i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRnvKlialS~d~vesH~~ 82 (224)
T KOG0854|consen 3 GPRLRLGDTVPNFEADTTVGKIKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRNVKLIALSVDDVESHKD 82 (224)
T ss_pred CCcccccCcCCCccccccccceehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhcCceEEEeehhhHHHHHH
Confidence 45788999999999999999999999988899999999999999999999999999999999999999999999998888
Q ss_pred HHHhc-------C--CCCceeeCCcHHHHHHcCCCCCCCCCCCCCCccceeEEEECCCCccC
Q 044272 81 WIKDI-------E--AYTPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVQ 133 (133)
Q Consensus 81 ~~~~~-------~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~ 133 (133)
|.+.. . .++|++.|++++++-.|++..+++....|.....++.|+|||+-||+
T Consensus 83 Wi~DIks~~~~~~~~~~yPIIaD~~rela~~l~MlD~~e~~~~~~~~T~Ravfvi~pdkKir 144 (224)
T KOG0854|consen 83 WIKDIKSYAKVKNHSVPYPIIADPNRELAFLLNMLDPEEKKNIGDGKTVRAVFVIDPDKKIR 144 (224)
T ss_pred HHHHHHHHHhccCCCCCCCeecCCchhhhhhhcccCHhHcCCCCCCceEEEEEEECCCceEE
Confidence 76654 2 34499999999999999998777665555557899999999999885
No 41
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.3e-22 Score=130.35 Aligned_cols=123 Identities=25% Similarity=0.460 Sum_probs=111.8
Q ss_pred CCCCCCCCceEEecCCC-eeecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHH
Q 044272 4 LTIGDSVPNLQVQTNQG-NFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWI 82 (133)
Q Consensus 4 l~~G~~~p~f~l~~~~G-~~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~ 82 (133)
++.|+.+|||+|.|++| .++|.++.+++++|++||+....|.|+++...+...|+++++.+..|+++|.|+....++|+
T Consensus 63 v~~Gd~iPD~tL~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~aeV~GlS~D~s~sqKaF~ 142 (211)
T KOG0855|consen 63 VNKGDAIPDFTLKDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAGAEVIGLSGDDSASQKAFA 142 (211)
T ss_pred eecCCcCCCcccccCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhcCceEEeeccCchHHHHHhh
Confidence 67899999999999999 89999996666999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCceeeCCcHHHHHHcCCCCCCCCCCCCCCccceeEEEECCCCc
Q 044272 83 KDIEAYTPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQ 131 (133)
Q Consensus 83 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~ 131 (133)
.+.+.+..+++|+.+++.+.||+.... ..| ...+..||+|.+|.
T Consensus 143 sKqnlPYhLLSDpk~e~ik~lGa~k~p---~gg--~~~Rsh~if~kg~~ 186 (211)
T KOG0855|consen 143 SKQNLPYHLLSDPKNEVIKDLGAPKDP---FGG--LPGRSHYIFDKGGV 186 (211)
T ss_pred hhccCCeeeecCcchhHHHHhCCCCCC---CCC--cccceEEEEecCCe
Confidence 999999999999999999999996533 223 47788999988763
No 42
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.89 E-value=3.6e-22 Score=123.01 Aligned_cols=108 Identities=18% Similarity=0.401 Sum_probs=97.7
Q ss_pred ceEEecCCC-eeecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCC--HHHHHHHHHhcCCC
Q 044272 12 NLQVQTNQG-NFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDD--VKSHNEWIKDIEAY 88 (133)
Q Consensus 12 ~f~l~~~~G-~~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~--~~~~~~~~~~~~~~ 88 (133)
+|++.+.+| +++++++ ++++++|+|| ++||+.|+..++.|.++.+++++.++.+++|+.|+ .+..+++.++++.+
T Consensus 1 ~~~~~~~~g~~~~~~~~-~~k~~ll~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~ 78 (116)
T cd02966 1 DFSLPDLDGKPVSLSDL-KGKVVLVNFW-ASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGIT 78 (116)
T ss_pred CccccCCCCCEeehHHc-CCCEEEEEee-cccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCC
Confidence 578899999 8999998 6787777776 88999999999999999999987789999999997 89999999999988
Q ss_pred CceeeCCcHHHHHHcCCCCCCCCCCCCCCccceeEEEECCCCccC
Q 044272 89 TPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVQ 133 (133)
Q Consensus 89 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~ 133 (133)
++++.|....+.+.|++ ...|.++|+|++|+|+
T Consensus 79 ~~~~~~~~~~~~~~~~~------------~~~P~~~l~d~~g~v~ 111 (116)
T cd02966 79 FPVLLDPDGELAKAYGV------------RGLPTTFLIDRDGRIR 111 (116)
T ss_pred cceEEcCcchHHHhcCc------------CccceEEEECCCCcEE
Confidence 89999998999999999 4689999999999874
No 43
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.87 E-value=2.3e-21 Score=121.91 Aligned_cols=102 Identities=18% Similarity=0.342 Sum_probs=90.8
Q ss_pred CceEEecCCC-eeecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCC--CHHHHHHHHHhcCC
Q 044272 11 PNLQVQTNQG-NFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCD--DVKSHNEWIKDIEA 87 (133)
Q Consensus 11 p~f~l~~~~G-~~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d--~~~~~~~~~~~~~~ 87 (133)
|+|++++.+| .++++++ ++++++|+|| ++||+.|+.+++.|.+++++ +++++|+.| +.+.+.+|+++++.
T Consensus 1 p~f~l~~~~g~~~~~~~~-~~k~~vl~F~-~~~C~~C~~~~~~l~~~~~~-----~~~i~i~~~~~~~~~~~~~~~~~~~ 73 (123)
T cd03011 1 PLFTATTLDGEQFDLESL-SGKPVLVYFW-ATWCPVCRFTSPTVNQLAAD-----YPVVSVALRSGDDGAVARFMQKKGY 73 (123)
T ss_pred CCceeecCCCCEeeHHHh-CCCEEEEEEE-CCcChhhhhhChHHHHHHhh-----CCEEEEEccCCCHHHHHHHHHHcCC
Confidence 7999999999 8999998 7788888887 89999999999999988754 678888875 47899999999999
Q ss_pred CCceeeCCcHHHHHHcCCCCCCCCCCCCCCccceeEEEECCCCcc
Q 044272 88 YTPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQV 132 (133)
Q Consensus 88 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i 132 (133)
+++++.|.+.++.+.|++ ...|+++++|++| |
T Consensus 74 ~~~~~~d~~~~~~~~~~i------------~~~P~~~vid~~g-i 105 (123)
T cd03011 74 GFPVINDPDGVISARWGV------------SVTPAIVIVDPGG-I 105 (123)
T ss_pred CccEEECCCcHHHHhCCC------------CcccEEEEEcCCC-e
Confidence 999999999999999999 4799999999998 5
No 44
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.87 E-value=2.9e-21 Score=145.65 Aligned_cols=114 Identities=20% Similarity=0.382 Sum_probs=96.8
Q ss_pred CCCCCCCCceEEecCCC-eeecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCC------CHH
Q 044272 4 LTIGDSVPNLQVQTNQG-NFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCD------DVK 76 (133)
Q Consensus 4 l~~G~~~p~f~l~~~~G-~~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d------~~~ 76 (133)
+..++.+|+|++.|.+| +++++ +|++++|.|| ++||+.|+.++|.|.+++++++..+++||+|+.+ +.+
T Consensus 32 ~~~~~~lP~f~l~D~dG~~v~ls---kGKpVvV~FW-ATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~ 107 (521)
T PRK14018 32 ATVPHTLSTLKTADNRPASVYLK---KDKPTLIKFW-ASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDG 107 (521)
T ss_pred ccccCCCCCeEeecCCCceeecc---CCCEEEEEEE-cCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHH
Confidence 45667999999999999 88886 6788888877 9999999999999999999998778999999863 345
Q ss_pred HHHHHHHhcCCC-CceeeCCcHHHHHHcCCCCCCCCCCCCCCccceeEEEECCCCccC
Q 044272 77 SHNEWIKDIEAY-TPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVQ 133 (133)
Q Consensus 77 ~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~ 133 (133)
...+|.+..+.. ++++.|.+..+.+.|++ ..+|++||||++|+|+
T Consensus 108 ~~~~~~~~~~y~~~pV~~D~~~~lak~fgV------------~giPTt~IIDkdGkIV 153 (521)
T PRK14018 108 DFQKWYAGLDYPKLPVLTDNGGTLAQSLNI------------SVYPSWAIIGKDGDVQ 153 (521)
T ss_pred HHHHHHHhCCCcccceeccccHHHHHHcCC------------CCcCeEEEEcCCCeEE
Confidence 566777776653 48999999999999999 4799999999999984
No 45
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=2.9e-21 Score=124.95 Aligned_cols=124 Identities=31% Similarity=0.564 Sum_probs=109.0
Q ss_pred CCCCCCCCCceEEecC-CC---eeecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHH
Q 044272 3 GLTIGDSVPNLQVQTN-QG---NFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSH 78 (133)
Q Consensus 3 ~l~~G~~~p~f~l~~~-~G---~~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~ 78 (133)
.+.+..++|+|+-+.. +| .++|+|| +|++++++|++..+..+|+.++-.+.+...+|++.|.+|+++|.|+....
T Consensus 3 ~~~~~~p~p~fk~~aVVdG~f~e~~L~dy-~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~fsh 81 (196)
T KOG0852|consen 3 MEVVFKPAPDFKGTAVVDGEFKEIKLSDY-KGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSVFSH 81 (196)
T ss_pred ccccCCCCCCcceeEEEcCcceEEeehhh-cccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccchhhh
Confidence 3567778899998765 67 5999999 88999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCC-------ceeeCCcHHHHHHcCCCCCCCCCCCCCCccceeEEEECCCCccC
Q 044272 79 NEWIKDIEAYT-------PIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVQ 133 (133)
Q Consensus 79 ~~~~~~~~~~~-------~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~ 133 (133)
.+|...-.... |+++|.+.++++.||+..++ .| ...+..||||++|.+|
T Consensus 82 lAW~ntprk~gGlg~~~iPllsD~~~~IsrdyGvL~~~----~G--~~lRglfIId~~gi~R 137 (196)
T KOG0852|consen 82 LAWINTPRKQGGLGPLNIPLLSDLNHEISRDYGVLKED----EG--IALRGLFIIDPDGILR 137 (196)
T ss_pred hhHhcCchhhCCcCccccceeeccchhhHHhcCceecC----CC--cceeeeEEEccccceE
Confidence 99976543322 99999999999999998755 34 6899999999999875
No 46
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.86 E-value=2e-21 Score=123.59 Aligned_cols=105 Identities=13% Similarity=0.286 Sum_probs=82.7
Q ss_pred EecCCC-eeecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHc--CceEEEEeCCC-HHHHHHHHHhcCCCC-
Q 044272 15 VQTNQG-NFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKR--EVKLLGLSCDD-VKSHNEWIKDIEAYT- 89 (133)
Q Consensus 15 l~~~~G-~~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~--~v~vv~is~d~-~~~~~~~~~~~~~~~- 89 (133)
+++.+| .++++++ +|++++|+|| ++||+.|+.+++.|++++++++++ +++|++||.|. .+...++.++++...
T Consensus 3 l~~~~G~~v~l~~~-~gk~vll~Fw-a~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~ 80 (131)
T cd03009 3 LLRNDGGKVPVSSL-EGKTVGLYFS-ASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAV 80 (131)
T ss_pred ccccCCCCccHHHh-CCcEEEEEEE-CCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEc
Confidence 457789 8999999 7888777776 889999999999999999999865 78999999984 455566666654322
Q ss_pred cee-eCCcHHHHHHcCCCCCCCCCCCCCCccceeEEEECCCCccC
Q 044272 90 PII-ADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVQ 133 (133)
Q Consensus 90 ~~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~ 133 (133)
++. .|....+.+.|++ ..+|+++|||++|+|+
T Consensus 81 ~~~~~~~~~~~~~~~~v------------~~~P~~~lid~~G~i~ 113 (131)
T cd03009 81 PFSDRERRSRLNRTFKI------------EGIPTLIILDADGEVV 113 (131)
T ss_pred ccCCHHHHHHHHHHcCC------------CCCCEEEEECCCCCEE
Confidence 322 2445688899999 3689999999999984
No 47
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.86 E-value=8.2e-21 Score=121.07 Aligned_cols=100 Identities=16% Similarity=0.262 Sum_probs=81.4
Q ss_pred CCeeecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHc--CceEEEEeCC-CHHHHHHHHHhcCCCCce--ee
Q 044272 19 QGNFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKR--EVKLLGLSCD-DVKSHNEWIKDIEAYTPI--IA 93 (133)
Q Consensus 19 ~G~~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~--~v~vv~is~d-~~~~~~~~~~~~~~~~~~--~~ 93 (133)
+.+++++++ +|++++|+|| ++||+.|+.+++.|+++++++++. ++++++|+.| +.+...+|.++++ .+.. +.
T Consensus 7 ~~~v~l~~~-~Gk~vll~F~-atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~-~~~~~~~~ 83 (132)
T cd02964 7 EGVVPVSAL-EGKTVGLYFS-ASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMP-PWLAVPFE 83 (132)
T ss_pred CccccHHHh-CCCEEEEEEE-CCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCC-CeEeeccC
Confidence 346999999 7887777776 999999999999999999999875 7999999997 4678889999987 4422 22
Q ss_pred C--CcHHHHHHcCCCCCCCCCCCCCCccceeEEEECCCCccC
Q 044272 94 D--PNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVQ 133 (133)
Q Consensus 94 d--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~ 133 (133)
| ....+.+.|++ ..+|+++|||++|+|+
T Consensus 84 d~~~~~~~~~~~~v------------~~iPt~~lid~~G~iv 113 (132)
T cd02964 84 DEELRELLEKQFKV------------EGIPTLVVLKPDGDVV 113 (132)
T ss_pred cHHHHHHHHHHcCC------------CCCCEEEEECCCCCEE
Confidence 3 23577888998 4699999999999984
No 48
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.83 E-value=2.9e-20 Score=150.68 Aligned_cols=116 Identities=12% Similarity=0.231 Sum_probs=101.9
Q ss_pred CCCCCCCCceEEec--CCC-eeec-ccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeC---C---
Q 044272 4 LTIGDSVPNLQVQT--NQG-NFKL-HDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSC---D--- 73 (133)
Q Consensus 4 l~~G~~~p~f~l~~--~~G-~~~l-~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~---d--- 73 (133)
...|+++|+|...+ .+| ++++ +++ +||++||.|| ++||+.|+.++|.|++++++++++++.||+|+. |
T Consensus 391 ~~~g~~~p~f~~~~~~~~g~~~~l~~~l-kGK~vll~FW-AsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~ 468 (1057)
T PLN02919 391 KKTATKVPEFPPKLDWLNTAPLQFRRDL-KGKVVILDFW-TYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEK 468 (1057)
T ss_pred cccCCcCCCCcccccccCCccccchhhc-CCCEEEEEEE-CCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccc
Confidence 45799999999876 578 7888 578 8888888887 999999999999999999999988999999974 3
Q ss_pred CHHHHHHHHHhcCCCCceeeCCcHHHHHHcCCCCCCCCCCCCCCccceeEEEECCCCccC
Q 044272 74 DVKSHNEWIKDIEAYTPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVQ 133 (133)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~ 133 (133)
+.+..+++.++++..+|++.|.+..+.+.|++ ..+|+++|||++|+|+
T Consensus 469 ~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~~V------------~~iPt~ilid~~G~iv 516 (1057)
T PLN02919 469 DLEAIRNAVLRYNISHPVVNDGDMYLWRELGV------------SSWPTFAVVSPNGKLI 516 (1057)
T ss_pred cHHHHHHHHHHhCCCccEEECCchHHHHhcCC------------CccceEEEECCCCeEE
Confidence 35677889999999999999999999999998 4799999999999974
No 49
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=99.83 E-value=7.4e-20 Score=121.73 Aligned_cols=127 Identities=17% Similarity=0.299 Sum_probs=99.2
Q ss_pred CCCCCCceEEecCCC-eeecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHc--CceEEEEeCC----CHHHH
Q 044272 6 IGDSVPNLQVQTNQG-NFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKR--EVKLLGLSCD----DVKSH 78 (133)
Q Consensus 6 ~G~~~p~f~l~~~~G-~~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~--~v~vv~is~d----~~~~~ 78 (133)
.....|+|+|+|++| +++++++ +||+++|+|+++.|..+|+..+..|.++++++.++ .+++++||.| +++.+
T Consensus 28 ~~~~~~~f~L~d~~G~~~~~~~~-~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~L 106 (174)
T PF02630_consen 28 NPRIVPDFTLTDQDGKTVTLDDL-KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPEVL 106 (174)
T ss_dssp TSCSSST-EEEETTSSEEEGGGG-TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHHH
T ss_pred CCccCCCcEEEcCCCCEecHHHh-CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHHHH
Confidence 345678999999999 8999999 89999999998987789999999999999999864 6889999975 68999
Q ss_pred HHHHHhcCCCCceeeC---CcHHHHHHcCCCCCCC----CCCCCCCccceeEEEECCCCccC
Q 044272 79 NEWIKDIEAYTPIIAD---PNREIIKQLNMVDPDE----KDSSGKQLPSRALHIVGPDHQVQ 133 (133)
Q Consensus 79 ~~~~~~~~~~~~~~~d---~~~~~~~~~~~~~~~~----~~~~~~~~~~p~~~lid~~G~i~ 133 (133)
++|+++++.++..+.. ...++.+.|++...+. ....+...|...++||||+|+|+
T Consensus 107 ~~Y~~~~~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~ 168 (174)
T PF02630_consen 107 KKYAKKFGPDFIGLTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIR 168 (174)
T ss_dssp HHHHHCHTTTCEEEEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEE
T ss_pred HHHHHhcCCCcceeEeCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEE
Confidence 9999999988743333 3357788899874322 12223334999999999999985
No 50
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.81 E-value=1.3e-19 Score=109.11 Aligned_cols=90 Identities=19% Similarity=0.361 Sum_probs=72.8
Q ss_pred CCeEEEEEeeCCCCchhHHHHHHHHhhhhHHH-HcCceEEEEeCCC-HHHHHHHHHhcCCCCceee---CCcHHHHHHcC
Q 044272 30 DNWTIIFSHPGDFTPVCTTELGKMAAYVPEFD-KREVKLLGLSCDD-VKSHNEWIKDIEAYTPIIA---DPNREIIKQLN 104 (133)
Q Consensus 30 ~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~-~~~v~vv~is~d~-~~~~~~~~~~~~~~~~~~~---d~~~~~~~~~~ 104 (133)
||+++|+|| ++||+.|..+++.|.+++++++ +.++++|+||.|. .+..+++.++.+.++..+. +....+.+.|+
T Consensus 1 gK~~ll~fw-a~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (95)
T PF13905_consen 1 GKPVLLYFW-ASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYG 79 (95)
T ss_dssp TSEEEEEEE--TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT
T ss_pred CCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCC
Confidence 577777777 8899999999999999999998 6679999999985 5788889998866663333 34568889999
Q ss_pred CCCCCCCCCCCCCccceeEEEECCCCcc
Q 044272 105 MVDPDEKDSSGKQLPSRALHIVGPDHQV 132 (133)
Q Consensus 105 ~~~~~~~~~~~~~~~~p~~~lid~~G~i 132 (133)
+ ..+|+++|+|++|+|
T Consensus 80 i------------~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 80 I------------NGIPTLVLLDPDGKI 95 (95)
T ss_dssp -------------TSSSEEEEEETTSBE
T ss_pred C------------CcCCEEEEECCCCCC
Confidence 9 479999999999997
No 51
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.81 E-value=3.9e-19 Score=118.39 Aligned_cols=112 Identities=13% Similarity=0.165 Sum_probs=90.4
Q ss_pred CCCCCCCCceEEecC-----CC------eeecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceE-----
Q 044272 4 LTIGDSVPNLQVQTN-----QG------NFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKL----- 67 (133)
Q Consensus 4 l~~G~~~p~f~l~~~-----~G------~~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~v----- 67 (133)
+..|+++|..++.+- +| .++++++ .||..+|.|| ++||+.|+.+.|.|.++ +++|+.+
T Consensus 23 ~~~~~~~p~v~~~~~ge~~~~~~~~~y~~~~~~~l-~GKV~lvn~~-Aswc~~c~~e~P~l~~l----~~~~~~~~~y~~ 96 (184)
T TIGR01626 23 LQVEQSVPSVGVSEYGEIVLSGKDTVYQPWGSAEL-AGKVRVVHHI-AGRTSAKEXNASLIDAI----KAAKFPPVKYQT 96 (184)
T ss_pred hhcCCcCCceEecCCceEEEcCCcccceeccHHHc-CCCEEEEEEE-ecCCChhhccchHHHHH----HHcCCCcccccc
Confidence 678999999988754 32 2788888 7887777776 99999999999999987 5568888
Q ss_pred -EEEeCCC-HH----HHHHHHHhcCCCCc---eeeCCcHHHHHHcCCCCCCCCCCCCCCccceeE-EEECCCCccC
Q 044272 68 -LGLSCDD-VK----SHNEWIKDIEAYTP---IIADPNREIIKQLNMVDPDEKDSSGKQLPSRAL-HIVGPDHQVQ 133 (133)
Q Consensus 68 -v~is~d~-~~----~~~~~~~~~~~~~~---~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~lid~~G~i~ 133 (133)
++|+.|+ .. -+++|+++.+..+| ++.|.++.+...||+ ...|.+ ||||++|+|+
T Consensus 97 t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g~v~~~~gv------------~~~P~T~fVIDk~GkVv 160 (184)
T TIGR01626 97 TTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKGAVKNAWQL------------NSEDSAIIVLDKTGKVK 160 (184)
T ss_pred eEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcchHHHhcCC------------CCCCceEEEECCCCcEE
Confidence 9999974 33 34556666676666 999999999999999 468777 9999999985
No 52
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.80 E-value=1.6e-18 Score=115.86 Aligned_cols=84 Identities=14% Similarity=0.262 Sum_probs=74.1
Q ss_pred CCCCceEEecCCC-eeecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeC--------CCHHHH
Q 044272 8 DSVPNLQVQTNQG-NFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSC--------DDVKSH 78 (133)
Q Consensus 8 ~~~p~f~l~~~~G-~~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~--------d~~~~~ 78 (133)
+.+++|++++.+| +++|+++ +||+++|+|| ++||+.|. +++.|++++++|+++|++|++|+. ++.+.+
T Consensus 3 ~~~~~f~~~~~~G~~v~Ls~~-~GKvvLVvf~-AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei 79 (183)
T PRK10606 3 DSILTTVVTTIDGEVTTLEKY-AGNVLLIVNV-ASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEI 79 (183)
T ss_pred CCccCcEeECCCCCEEeHHHh-CCCEEEEEEE-eCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHH
Confidence 3688999999999 8999999 7888878875 99999885 899999999999999999999987 578889
Q ss_pred HHHHH-hcCCCCceeeC
Q 044272 79 NEWIK-DIEAYTPIIAD 94 (133)
Q Consensus 79 ~~~~~-~~~~~~~~~~d 94 (133)
.+|++ +++..+|++.+
T Consensus 80 ~~f~~~~~g~~Fpv~~k 96 (183)
T PRK10606 80 KTYCRTTWGVTFPMFSK 96 (183)
T ss_pred HHHHHHccCCCceeEEE
Confidence 99997 78988998843
No 53
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=3.3e-18 Score=108.49 Aligned_cols=125 Identities=19% Similarity=0.294 Sum_probs=108.3
Q ss_pred CCCCCCCCCceEEecCCC-eeecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHH
Q 044272 3 GLTIGDSVPNLQVQTNQG-NFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEW 81 (133)
Q Consensus 3 ~l~~G~~~p~f~l~~~~G-~~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~ 81 (133)
.+++|+++|+|++.+.+. .++++++ +||+.++..|++.-.|+|..+.+++++...++. ++.|+.||.|.|..+.+|
T Consensus 17 ~~~vGd~ap~ftl~~~dL~~v~l~~~-~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~--~~~Vl~IS~DLPFAq~Rf 93 (158)
T COG2077 17 EPQVGDKAPDFTLVGKDLNDVSLADF-AGKKKVISVFPSIDTPVCATQVRKFNEEAAKLG--NTVVLCISMDLPFAQKRF 93 (158)
T ss_pred CCccCCcCCceEEEcCcccceecccc-CCceEEEEEccCCCCchhhHHHHHHHHHHhccC--CcEEEEEeCCChhHHhhh
Confidence 378999999999999988 8999999 889999999999999999999999999877776 699999999999999999
Q ss_pred HHhcCCCC-ceeeCC-cHHHHHHcCCCCCCCCCCCCCCccceeEEEECCCCccC
Q 044272 82 IKDIEAYT-PIIADP-NREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVQ 133 (133)
Q Consensus 82 ~~~~~~~~-~~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~ 133 (133)
+...|... ..++|- +.++.+.||+...+. +..| ...++.|++|++|+|.
T Consensus 94 C~aeGi~nv~~lSd~r~~~Fge~yGv~I~eg-pL~g--LlARaV~V~De~g~V~ 144 (158)
T COG2077 94 CGAEGIENVITLSDFRDRAFGENYGVLINEG-PLAG--LLARAVFVLDENGKVT 144 (158)
T ss_pred hhhcCcccceEhhhhhhhhhhHhhCEEeccc-cccC--eeeeEEEEEcCCCcEE
Confidence 99999987 777774 456889999975442 2234 5789999999999873
No 54
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.77 E-value=1.7e-18 Score=114.84 Aligned_cols=97 Identities=9% Similarity=0.163 Sum_probs=77.0
Q ss_pred CCCCCCceEEecCCC-eeecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHh
Q 044272 6 IGDSVPNLQVQTNQG-NFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKD 84 (133)
Q Consensus 6 ~G~~~p~f~l~~~~G-~~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~ 84 (133)
+...-|+|++. +| +++++++ + +|+|| ++|||+|+.++|.|+++++++ |+.|++||.|...
T Consensus 51 ~~~~~~~f~l~--dG~~v~lsd~-~----lV~Fw-aswCp~C~~e~P~L~~l~~~~---g~~Vi~Vs~D~~~-------- 111 (181)
T PRK13728 51 EKPAPRWFRLS--NGRQVNLADW-K----VVLFM-QGHCPYCHQFDPVLKQLAQQY---GFSVFPYTLDGQG-------- 111 (181)
T ss_pred CCCCCCccCCC--CCCEeehhHc-e----EEEEE-CCCCHhHHHHHHHHHHHHHHc---CCEEEEEEeCCCC--------
Confidence 44456788886 88 8999999 4 55555 899999999999999998776 6999999997432
Q ss_pred cCCCCceeeC-CcHHHHHHcCCCCCCCCCCCCCCccceeEEEECCCCcc
Q 044272 85 IEAYTPIIAD-PNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQV 132 (133)
Q Consensus 85 ~~~~~~~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i 132 (133)
...+|++.| ....+.+.||+.. ..+|++||||++|+|
T Consensus 112 -~~~fPv~~dd~~~~~~~~~g~~~----------~~iPttfLId~~G~i 149 (181)
T PRK13728 112 -DTAFPEALPAPPDVMQTFFPNIP----------VATPTTFLVNVNTLE 149 (181)
T ss_pred -CCCCceEecCchhHHHHHhCCCC----------CCCCeEEEEeCCCcE
Confidence 146788885 5667888898521 379999999999987
No 55
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=9e-16 Score=97.33 Aligned_cols=127 Identities=25% Similarity=0.432 Sum_probs=108.4
Q ss_pred CCCCCCCCceEEecC------CC--eeecccccCCCeEEEEEeeCCCCchhHH-HHHHHHhhhhHHHHcCce-EEEEeCC
Q 044272 4 LTIGDSVPNLQVQTN------QG--NFKLHDFIGDNWTIIFSHPGDFTPVCTT-ELGKMAAYVPEFDKREVK-LLGLSCD 73 (133)
Q Consensus 4 l~~G~~~p~f~l~~~------~G--~~~l~d~~~~~~~vl~f~~~~~c~~C~~-~~~~l~~~~~~~~~~~v~-vv~is~d 73 (133)
+.+|+++|+.++... .| .++..++.+||+++|+-.++.+.|.|.. ++|.+.+++++++++||. |+.||.+
T Consensus 3 ~~vg~klP~vtf~tr~~~~~~~~~~~~ts~~lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD~I~cVSVN 82 (165)
T COG0678 3 IMVGKKLPAVTFKTRVGDETADGWVDVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKGVDEIYCVSVN 82 (165)
T ss_pred cccCCcCCceEeEEeeccccCCCcccccHHHhcCCCEEEEEeCCCccCCCcccccCccHHHHHHHHHHcCCceEEEEEeC
Confidence 679999998777543 55 4788888899999999999999999998 899999999999999987 9999999
Q ss_pred CHHHHHHHHHhcCCC-C-ceeeCCcHHHHHHcCCCCCCCCCCCCCCccceeEEEECCCCcc
Q 044272 74 DVKSHNEWIKDIEAY-T-PIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQV 132 (133)
Q Consensus 74 ~~~~~~~~~~~~~~~-~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i 132 (133)
++..+.+|++..+.. . .++.|.+.++.+.+|+....+..+.|. ...+...|| +||.|
T Consensus 83 D~FVm~AWak~~g~~~~I~fi~Dg~geFTk~~Gm~~d~~~~g~G~-RS~RYsmvV-~nGvV 141 (165)
T COG0678 83 DAFVMNAWAKSQGGEGNIKFIPDGNGEFTKAMGMLVDKSDLGFGV-RSWRYSMVV-ENGVV 141 (165)
T ss_pred cHHHHHHHHHhcCCCccEEEecCCCchhhhhcCceeecccCCcce-eeeeEEEEE-eCCeE
Confidence 999999999999988 4 999999999999999987776655553 356666666 57765
No 56
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=99.66 E-value=1.6e-15 Score=103.39 Aligned_cols=124 Identities=14% Similarity=0.240 Sum_probs=95.5
Q ss_pred CCC-ceEEecCCC-eeecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHH---HcCceEEEEeCC----CHHHHH
Q 044272 9 SVP-NLQVQTNQG-NFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFD---KREVKLLGLSCD----DVKSHN 79 (133)
Q Consensus 9 ~~p-~f~l~~~~G-~~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~---~~~v~vv~is~d----~~~~~~ 79 (133)
.++ +|+++|++| .+++.++ +|++.+|+|.+++|..+|+.++..|..+++++. ...++++.||.| +++.++
T Consensus 45 ~~~g~f~l~d~~G~~~~~~~l-~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk 123 (207)
T COG1999 45 YIGGDFELTDQDGKPFTLKDL-KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLK 123 (207)
T ss_pred ccCCceeeecCCCCEeecccc-CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHH
Confidence 344 799999999 8999999 899999999988877899999999999999987 335889999975 688888
Q ss_pred HHHH-hcCCCCceeeC---CcHHHHHHcCCCCC--CCCC-CCCCCccceeEEEECCCCccC
Q 044272 80 EWIK-DIEAYTPIIAD---PNREIIKQLNMVDP--DEKD-SSGKQLPSRALHIVGPDHQVQ 133 (133)
Q Consensus 80 ~~~~-~~~~~~~~~~d---~~~~~~~~~~~~~~--~~~~-~~~~~~~~p~~~lid~~G~i~ 133 (133)
+|+. .....+..+.+ ...++.++|++... +... ......|...+|+||++|+++
T Consensus 124 ~Y~~~~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~ 184 (207)
T COG1999 124 KYAELNFDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFL 184 (207)
T ss_pred HHhcccCCCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEE
Confidence 9988 44433444443 34578899999742 2121 123335999999999999873
No 57
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.61 E-value=3.3e-15 Score=96.15 Aligned_cols=107 Identities=16% Similarity=0.255 Sum_probs=87.6
Q ss_pred eEEecCCC-eeecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHc--CceEEEEeCC-CHHHHHHHHHhcCCC
Q 044272 13 LQVQTNQG-NFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKR--EVKLLGLSCD-DVKSHNEWIKDIEAY 88 (133)
Q Consensus 13 f~l~~~~G-~~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~--~v~vv~is~d-~~~~~~~~~~~~~~~ 88 (133)
..+...+| .+-.++...|| +|..+|++.|||.|+.-.|.|.+++++++++ .+.||.||.| +.+.+.+|..+++.+
T Consensus 15 ~~l~~~~~~~~~~~~~l~gK-vV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~ 93 (157)
T KOG2501|consen 15 NRLRKQDGTEVLASEALQGK-VVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGD 93 (157)
T ss_pred CeeeccCCccchHhHhhCCc-EEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCC
Confidence 56777788 55555433775 5555678999999999999999999999866 4889999998 577888898887777
Q ss_pred C---ceeeCCcHHHHHHcCCCCCCCCCCCCCCccceeEEEECCCCcc
Q 044272 89 T---PIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQV 132 (133)
Q Consensus 89 ~---~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i 132 (133)
+ |+..+..+++.+.|++ ..+|+..++.++|++
T Consensus 94 W~~iPf~d~~~~~l~~ky~v------------~~iP~l~i~~~dG~~ 128 (157)
T KOG2501|consen 94 WLAIPFGDDLIQKLSEKYEV------------KGIPALVILKPDGTV 128 (157)
T ss_pred eEEecCCCHHHHHHHHhccc------------CcCceeEEecCCCCE
Confidence 6 7777777899999999 479999999999975
No 58
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=7.5e-15 Score=93.67 Aligned_cols=130 Identities=23% Similarity=0.423 Sum_probs=104.5
Q ss_pred CCCCCCCCCCCc--eE-EecC----CC-eeecccccCCCeEEEEEeeCCCCch-hHHHHHHHHhhhhHHHHcCce-EEEE
Q 044272 1 MPGLTIGDSVPN--LQ-VQTN----QG-NFKLHDFIGDNWTIIFSHPGDFTPV-CTTELGKMAAYVPEFDKREVK-LLGL 70 (133)
Q Consensus 1 m~~l~~G~~~p~--f~-l~~~----~G-~~~l~d~~~~~~~vl~f~~~~~c~~-C~~~~~~l~~~~~~~~~~~v~-vv~i 70 (133)
|+.+.+|+.+|+ .+ +.+. .+ +++++++.+||+++|+=-++.+.|. |+.++|.+.+..++++.+|+. |++|
T Consensus 6 ~a~i~vGd~~p~~~is~~~~~~~~~~~~tv~~~~l~~GKKvIifGvPgAFtPtCs~~HvPGyi~~a~elksKGVd~iicv 85 (171)
T KOG0541|consen 6 MAPIAVGDTLPSGTISLFEDEPEQLQGNTVNVSSLFKGKKVILFGVPGAFTPTCSSSHVPGYIEKADELKSKGVDEIICV 85 (171)
T ss_pred cccccccCccccccchhhccCccccccceEEhHHhcCCceEEEEcCCCccCCccccccCchHHHHHHHHHhcCCcEEEEE
Confidence 567899999999 44 3333 24 7999999899999999899999999 678899999999999999988 9999
Q ss_pred eCCCHHHHHHHHHhcCCCC--ceeeCCcHHHHHHcCCCCCCCCCCCCCCccceeEEEECCCCcc
Q 044272 71 SCDDVKSHNEWIKDIEAYT--PIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQV 132 (133)
Q Consensus 71 s~d~~~~~~~~~~~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i 132 (133)
|.+++..+.+|++.++.+. .++.|+++++.+.+|+.....+..-|. ...+...++ .||+|
T Consensus 86 SVnDpFv~~aW~k~~g~~~~V~f~aD~~g~ftk~lgleld~~d~~~g~-RS~R~a~vv-engkV 147 (171)
T KOG0541|consen 86 SVNDPFVMKAWAKSLGANDHVKFVADPAGEFTKSLGLELDLSDKLLGV-RSRRYALVV-ENGKV 147 (171)
T ss_pred ecCcHHHHHHHHhhcCccceEEEEecCCCceeeeccceeeeccccCcc-ccccEEEEE-eCCeE
Confidence 9999999999999998866 999999999999999976544332231 233344444 67876
No 59
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.56 E-value=1e-14 Score=94.99 Aligned_cols=82 Identities=13% Similarity=0.192 Sum_probs=57.7
Q ss_pred eeecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCCCceeeCCcHHH-
Q 044272 21 NFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPIIADPNREI- 99 (133)
Q Consensus 21 ~~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~- 99 (133)
+++++++ .+|+|| ++||++|+.++|.|+++++++ ++.|++|+.|.... ..++...|.+...
T Consensus 46 ~~~l~~~-----~lvnFW-AsWCppCr~e~P~L~~l~~~~---~~~Vi~Vs~d~~~~---------~~fp~~~~~~~~~~ 107 (153)
T TIGR02738 46 HANQDDY-----ALVFFY-QSTCPYCHQFAPVLKRFSQQF---GLPVYAFSLDGQGL---------TGFPDPLPATPEVM 107 (153)
T ss_pred hhhcCCC-----EEEEEE-CCCChhHHHHHHHHHHHHHHc---CCcEEEEEeCCCcc---------cccccccCCchHHH
Confidence 4565554 366665 899999999999999998776 68999999985321 1344444433333
Q ss_pred HHHc---CCCCCCCCCCCCCCccceeEEEECCCCcc
Q 044272 100 IKQL---NMVDPDEKDSSGKQLPSRALHIVGPDHQV 132 (133)
Q Consensus 100 ~~~~---~~~~~~~~~~~~~~~~~p~~~lid~~G~i 132 (133)
.+.| ++ ..+|++|+||++|++
T Consensus 108 ~~~~~~~~v------------~~iPTt~LID~~G~~ 131 (153)
T TIGR02738 108 QTFFPNPRP------------VVTPATFLVNVNTRK 131 (153)
T ss_pred HHHhccCCC------------CCCCeEEEEeCCCCE
Confidence 3445 44 479999999999874
No 60
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=99.52 E-value=1.3e-13 Score=94.64 Aligned_cols=122 Identities=17% Similarity=0.297 Sum_probs=94.5
Q ss_pred CceEEecCCC-eeecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHc-Cc--eEEEEeCC----CHHHHHHHH
Q 044272 11 PNLQVQTNQG-NFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKR-EV--KLLGLSCD----DVKSHNEWI 82 (133)
Q Consensus 11 p~f~l~~~~G-~~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~-~v--~vv~is~d----~~~~~~~~~ 82 (133)
-+|+|.|.+| .++-.|| .|||++++|-++.|..+|+.++..|....+++++. |+ .-|+||.| +++.+.+|.
T Consensus 120 GpF~L~d~~Gk~~te~df-~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~ 198 (280)
T KOG2792|consen 120 GPFSLVDHDGKRVTEKDF-LGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYV 198 (280)
T ss_pred CceEEEecCCCeeccccc-ccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHH
Confidence 3899999999 7999999 89999999998887779999999999999999865 33 35788864 688999999
Q ss_pred HhcCCCCceeeC---CcHHHHHHcCCCCCCCCCC--CCCCc-cceeEEEECCCCccC
Q 044272 83 KDIEAYTPIIAD---PNREIIKQLNMVDPDEKDS--SGKQL-PSRALHIVGPDHQVQ 133 (133)
Q Consensus 83 ~~~~~~~~~~~d---~~~~~~~~~~~~~~~~~~~--~~~~~-~~p~~~lid~~G~i~ 133 (133)
.++.....-+.+ .-..+++.|.||....+.. .+..+ |.-..|||||+|+.+
T Consensus 199 ~eF~pkllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fv 255 (280)
T KOG2792|consen 199 SEFHPKLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFV 255 (280)
T ss_pred HhcChhhhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCccee
Confidence 998755433333 3357889999986553322 22222 778899999999853
No 61
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.42 E-value=4.6e-13 Score=86.39 Aligned_cols=86 Identities=12% Similarity=0.121 Sum_probs=62.7
Q ss_pred EecCCC-eeeccccc-CCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCCCcee
Q 044272 15 VQTNQG-NFKLHDFI-GDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPII 92 (133)
Q Consensus 15 l~~~~G-~~~l~d~~-~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~ 92 (133)
+++.++ ...+.+.. .+++++|+|| ++||+.|+.+++.+.++.+.+.+. ++++.|..|...
T Consensus 3 ~~~~~~~~~~~~~a~~~gk~vvV~F~-A~WC~~C~~~~p~l~~l~~~~~~~-~~~v~v~vd~~~---------------- 64 (142)
T cd02950 3 LEQLAASSTPPEVALSNGKPTLVEFY-ADWCTVCQEMAPDVAKLKQKYGDQ-VNFVMLNVDNPK---------------- 64 (142)
T ss_pred hHHHhhccCCHHHHHhCCCEEEEEEE-CCcCHHHHHhHHHHHHHHHHhccC-eeEEEEEcCCcc----------------
Confidence 344444 44444432 5677777766 999999999999999998888643 788888887421
Q ss_pred eCCcHHHHHHcCCCCCCCCCCCCCCccceeEEEECCCCccC
Q 044272 93 ADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVQ 133 (133)
Q Consensus 93 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~ 133 (133)
...+.+.|++ ..+|+++++|++|+++
T Consensus 65 ---~~~~~~~~~V------------~~iPt~v~~~~~G~~v 90 (142)
T cd02950 65 ---WLPEIDRYRV------------DGIPHFVFLDREGNEE 90 (142)
T ss_pred ---cHHHHHHcCC------------CCCCEEEEECCCCCEE
Confidence 1245677888 4799999999999863
No 62
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.35 E-value=2e-12 Score=91.54 Aligned_cols=83 Identities=18% Similarity=0.300 Sum_probs=64.1
Q ss_pred eeecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCCCceeeCCcHHHH
Q 044272 21 NFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPIIADPNREII 100 (133)
Q Consensus 21 ~~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~ 100 (133)
...++++ .+++++++|| ++||+.|+.++|.|.++.+++ |+.|++||.|.... ..++.+ +.+..++
T Consensus 158 ~~~l~~l-~~k~~Lv~F~-AswCp~C~~~~P~L~~la~~y---g~~Vi~VsvD~~~~---------~~fp~~-~~d~~la 222 (271)
T TIGR02740 158 DRVMKDL-AKKSGLFFFF-KSDCPYCHQQAPILQAFEDRY---GIEVLPVSVDGGPL---------PGFPNA-RPDAGQA 222 (271)
T ss_pred HHHHHHh-cCCeEEEEEE-CCCCccHHHHhHHHHHHHHHc---CcEEEEEeCCCCcc---------ccCCcc-cCCHHHH
Confidence 3788888 7777766666 889999999999999987776 69999999985321 114444 3456678
Q ss_pred HHcCCCCCCCCCCCCCCccceeEEEECCCC
Q 044272 101 KQLNMVDPDEKDSSGKQLPSRALHIVGPDH 130 (133)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~p~~~lid~~G 130 (133)
+.||+ ..+|++||+|++|
T Consensus 223 ~~~gV------------~~vPtl~Lv~~~~ 240 (271)
T TIGR02740 223 QQLKI------------RTVPAVFLADPDP 240 (271)
T ss_pred HHcCC------------CcCCeEEEEECCC
Confidence 99999 4799999999954
No 63
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=99.32 E-value=4.2e-11 Score=80.65 Aligned_cols=123 Identities=10% Similarity=0.164 Sum_probs=98.8
Q ss_pred CCCCCCCCceEEecCCCeeecccccCCC-eEEEEEee-----CCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHH
Q 044272 4 LTIGDSVPNLQVQTNQGNFKLHDFIGDN-WTIIFSHP-----GDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKS 77 (133)
Q Consensus 4 l~~G~~~p~f~l~~~~G~~~l~d~~~~~-~~vl~f~~-----~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~ 77 (133)
|+.+..-.++.+...+|+++|+|+..|+ -++|+.|. ...|+.|...+.+++.....+.++++.++.||..+.+.
T Consensus 40 LP~v~v~~~Y~F~g~~G~v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vSraP~~~ 119 (211)
T PF05988_consen 40 LPMVEVDKDYVFDGPDGPVSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVVSRAPLEK 119 (211)
T ss_pred CCCccCCCCeEEeCCCCcccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEEeCCCHHH
Confidence 5556555678998889999999988776 44455553 46799999999999888899999999999999999999
Q ss_pred HHHHHHhcCCCCceeeCCcHHHHHHcCCCCCCCCCCCCCCccceeEEEECCCCcc
Q 044272 78 HNEWIKDIEAYTPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQV 132 (133)
Q Consensus 78 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i 132 (133)
+.+|+++.|+.+|.++.....+...|++...+... .+.-++|+-|. |+|
T Consensus 120 i~afk~rmGW~~pw~Ss~gs~Fn~D~~~~~~~~~~-----~~g~svF~Rdg-~~V 168 (211)
T PF05988_consen 120 IEAFKRRMGWTFPWYSSYGSDFNYDFGVSFDEGGE-----MPGLSVFLRDG-GRV 168 (211)
T ss_pred HHHHHHhcCCCceEEEcCCCcccccccceeccCCC-----ceeEEEEEEcC-CEE
Confidence 99999999999999999888899999986543222 34446676665 665
No 64
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.31 E-value=1.7e-11 Score=74.86 Aligned_cols=70 Identities=10% Similarity=0.067 Sum_probs=53.0
Q ss_pred CCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCCCceeeCCcHHHHHHcCCCCC
Q 044272 29 GDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPIIADPNREIIKQLNMVDP 108 (133)
Q Consensus 29 ~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 108 (133)
++++++|.|| ++||+.|+.++|.|.++.+++ .++.++.|+.|..... ..+++.|++
T Consensus 14 ~~k~vvv~F~-a~wC~~C~~~~p~l~~la~~~--~~v~~~~vd~d~~~~~------------------~~l~~~~~V--- 69 (103)
T cd02985 14 KGRLVVLEFA-LKHSGPSVKIYPTMVKLSRTC--NDVVFLLVNGDENDST------------------MELCRREKI--- 69 (103)
T ss_pred CCCEEEEEEE-CCCCHhHHHHhHHHHHHHHHC--CCCEEEEEECCCChHH------------------HHHHHHcCC---
Confidence 5677777776 999999999999999998888 4688999988753322 245677777
Q ss_pred CCCCCCCCCccceeEEEECCCCcc
Q 044272 109 DEKDSSGKQLPSRALHIVGPDHQV 132 (133)
Q Consensus 109 ~~~~~~~~~~~~p~~~lid~~G~i 132 (133)
..+|+++++ ++|++
T Consensus 70 ---------~~~Pt~~~~-~~G~~ 83 (103)
T cd02985 70 ---------IEVPHFLFY-KDGEK 83 (103)
T ss_pred ---------CcCCEEEEE-eCCeE
Confidence 468886665 78875
No 65
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.23 E-value=8.1e-11 Score=71.55 Aligned_cols=69 Identities=7% Similarity=0.172 Sum_probs=53.4
Q ss_pred ccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCCCceeeCCcHHHHHHcC
Q 044272 25 HDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPIIADPNREIIKQLN 104 (133)
Q Consensus 25 ~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 104 (133)
+++ +|++++|.|| ++||++|+..+|.+.++.+.++ ++.++.|..+. ....+.++|+
T Consensus 14 ~~~-~g~~vlV~F~-a~WC~~C~~~~p~l~~la~~~~--~~~~~~vd~~~--------------------~~~~l~~~~~ 69 (100)
T cd02999 14 AFN-REDYTAVLFY-ASWCPFSASFRPHFNALSSMFP--QIRHLAIEESS--------------------IKPSLLSRYG 69 (100)
T ss_pred Hhc-CCCEEEEEEE-CCCCHHHHhHhHHHHHHHHHhc--cCceEEEECCC--------------------CCHHHHHhcC
Confidence 345 7887777776 9999999999999999988885 57777775441 2346778888
Q ss_pred CCCCCCCCCCCCCccceeEEEECCC
Q 044272 105 MVDPDEKDSSGKQLPSRALHIVGPD 129 (133)
Q Consensus 105 ~~~~~~~~~~~~~~~~p~~~lid~~ 129 (133)
+ ...|++++++++
T Consensus 70 V------------~~~PT~~lf~~g 82 (100)
T cd02999 70 V------------VGFPTILLFNST 82 (100)
T ss_pred C------------eecCEEEEEcCC
Confidence 8 478999999754
No 66
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.21 E-value=4.3e-11 Score=75.39 Aligned_cols=82 Identities=10% Similarity=0.101 Sum_probs=57.3
Q ss_pred CC-CeEEEEEeeCCCCchhHHHHHHHH---hhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCCCceeeCCcHHHHHHcC
Q 044272 29 GD-NWTIIFSHPGDFTPVCTTELGKMA---AYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPIIADPNREIIKQLN 104 (133)
Q Consensus 29 ~~-~~~vl~f~~~~~c~~C~~~~~~l~---~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 104 (133)
.+ ++++|+|| ++||++|+...+.+. ++.+.++ .++.++.|+.|.......| .........+.+.|+
T Consensus 12 ~~~k~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~~i~~d~~~~~~~~--------~~~~~~~~~l~~~~~ 81 (125)
T cd02951 12 DGKKPLLLLFS-QPGCPYCDKLKRDYLNDPAVQAYIR-AHFVVVYINIDGDKEVTDF--------DGEALSEKELARKYR 81 (125)
T ss_pred cCCCcEEEEEe-CCCCHHHHHHHHHhcCcHHHHHHHH-hheEEEEEEccCCceeecc--------CCCCccHHHHHHHcC
Confidence 45 66666665 999999999999885 4444554 3588888888754332221 111124578889999
Q ss_pred CCCCCCCCCCCCCccceeEEEECCC-Ccc
Q 044272 105 MVDPDEKDSSGKQLPSRALHIVGPD-HQV 132 (133)
Q Consensus 105 ~~~~~~~~~~~~~~~~p~~~lid~~-G~i 132 (133)
+ ..+|+++++|++ |++
T Consensus 82 v------------~~~Pt~~~~~~~gg~~ 98 (125)
T cd02951 82 V------------RFTPTVIFLDPEGGKE 98 (125)
T ss_pred C------------ccccEEEEEcCCCCce
Confidence 8 469999999999 775
No 67
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.14 E-value=3.5e-10 Score=69.95 Aligned_cols=69 Identities=14% Similarity=0.119 Sum_probs=53.4
Q ss_pred CCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCCCceeeCCcHHHHHHcCCCCC
Q 044272 29 GDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPIIADPNREIIKQLNMVDP 108 (133)
Q Consensus 29 ~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 108 (133)
++++++|.|| ++||+.|+...+.+.++.+++++.++.+..|..|. +..+.+.|++
T Consensus 23 ~~~~vlV~F~-a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~---------------------~~~l~~~~~V--- 77 (111)
T cd02963 23 FKKPYLIKIT-SDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGH---------------------ERRLARKLGA--- 77 (111)
T ss_pred CCCeEEEEEE-CCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccc---------------------cHHHHHHcCC---
Confidence 4566777766 99999999999999999999986678888887662 2356777888
Q ss_pred CCCCCCCCCccceeEEEECCCCcc
Q 044272 109 DEKDSSGKQLPSRALHIVGPDHQV 132 (133)
Q Consensus 109 ~~~~~~~~~~~~p~~~lid~~G~i 132 (133)
..+|+++++. +|++
T Consensus 78 ---------~~~Pt~~i~~-~g~~ 91 (111)
T cd02963 78 ---------HSVPAIVGII-NGQV 91 (111)
T ss_pred ---------ccCCEEEEEE-CCEE
Confidence 4688888884 6654
No 68
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.14 E-value=9.1e-11 Score=72.35 Aligned_cols=88 Identities=8% Similarity=0.154 Sum_probs=57.6
Q ss_pred CCCeEEEEEeeCCCCchhHHHHHHHHhh---hhHHHHcCceEEEEeCCCHHH-HHHHHHhcCCCCceeeCCcHHHHHHcC
Q 044272 29 GDNWTIIFSHPGDFTPVCTTELGKMAAY---VPEFDKREVKLLGLSCDDVKS-HNEWIKDIEAYTPIIADPNREIIKQLN 104 (133)
Q Consensus 29 ~~~~~vl~f~~~~~c~~C~~~~~~l~~~---~~~~~~~~v~vv~is~d~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~ 104 (133)
.+++++++|+ ..|||+|+...+.+.+. .+.++ .++.++.+..+.... ..++....+. +.+.....++.+.||
T Consensus 4 ~~k~~v~~F~-~~~C~~C~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~ 79 (112)
T PF13098_consen 4 NGKPIVVVFT-DPWCPYCKKLEKELFPDNDVARYLK-DDFQVIFVNIDDSRDESEAVLDFDGQ--KNVRLSNKELAQRYG 79 (112)
T ss_dssp TSSEEEEEEE--TT-HHHHHHHHHHHHHHHHHCEEH-CECEEEECESHSHHHHHHHHHSHTCH--SSCHHHHHHHHHHTT
T ss_pred CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHHHHhh-cCeEEEEEecCCcccccccccccccc--hhhhHHHHHHHHHcC
Confidence 4667777776 99999999888888753 33333 258888888876543 3344443332 222223558999999
Q ss_pred CCCCCCCCCCCCCccceeEEEECCCCcc
Q 044272 105 MVDPDEKDSSGKQLPSRALHIVGPDHQV 132 (133)
Q Consensus 105 ~~~~~~~~~~~~~~~~p~~~lid~~G~i 132 (133)
+ ..+|+++++|++|++
T Consensus 80 v------------~gtPt~~~~d~~G~~ 95 (112)
T PF13098_consen 80 V------------NGTPTIVFLDKDGKI 95 (112)
T ss_dssp --------------SSSEEEECTTTSCE
T ss_pred C------------CccCEEEEEcCCCCE
Confidence 9 479999999999985
No 69
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=2.1e-09 Score=68.91 Aligned_cols=121 Identities=14% Similarity=0.246 Sum_probs=85.7
Q ss_pred CCCceEEecCCC-eeecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeC--------CCHHHHH
Q 044272 9 SVPNLQVQTNQG-NFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSC--------DDVKSHN 79 (133)
Q Consensus 9 ~~p~f~l~~~~G-~~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~--------d~~~~~~ 79 (133)
.+-+|++++.+| +++|+++ +|+.++++-. ++.|..-. +...|..++++|+++|+.|++.-. .+.++..
T Consensus 4 ~~yd~~~~~~~G~~~~l~~~-~GkVlLIVNt-ASkCGfTp-QYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~ 80 (162)
T COG0386 4 SIYDFSVKDIDGEPVSLSDY-KGKVLLIVNT-ASKCGFTP-QYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIA 80 (162)
T ss_pred ccccceeeccCCCCccHHHh-CCcEEEEEEc-ccccCCcH-hHHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHH
Confidence 456899999999 8999999 8887777766 77799766 899999999999999999999964 5678888
Q ss_pred HHHH-hcCCCCceeeC------CcHHHHHHcCCCCCCCCCCCCCCccceeEEEECCCCccC
Q 044272 80 EWIK-DIEAYTPIIAD------PNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVQ 133 (133)
Q Consensus 80 ~~~~-~~~~~~~~~~d------~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~ 133 (133)
+|+. ++|..||+..- ....+.+.+.-..+..... ....=.=+-||||++|+|+
T Consensus 81 ~fC~~~YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~-~~IkWNFtKFLvdr~G~VV 140 (162)
T COG0386 81 KFCQLNYGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGG-KDIKWNFTKFLVDRDGNVV 140 (162)
T ss_pred HHHHhccCceeeeeeEEeecCCCCCcHHHHHHhcCCCCccC-CccceeeEEEEEcCCCcEE
Confidence 8865 56667755542 2234444443322110001 1111244789999999984
No 70
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.10 E-value=5.8e-10 Score=66.92 Aligned_cols=68 Identities=13% Similarity=0.170 Sum_probs=51.3
Q ss_pred CCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCCCceeeCCcHHHHHHcCCCCC
Q 044272 29 GDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPIIADPNREIIKQLNMVDP 108 (133)
Q Consensus 29 ~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 108 (133)
++++++|.|| ++||+.|+...+.+.++.+.+++ .+.++.|..|. ...+.+.|++
T Consensus 11 ~~~~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~---------------------~~~l~~~~~i--- 64 (96)
T cd02956 11 TQVPVVVDFW-APRSPPSKELLPLLERLAEEYQG-QFVLAKVNCDA---------------------QPQIAQQFGV--- 64 (96)
T ss_pred CCCeEEEEEE-CCCChHHHHHHHHHHHHHHHhCC-cEEEEEEeccC---------------------CHHHHHHcCC---
Confidence 3566777766 99999999999999999888864 36666776542 3467778888
Q ss_pred CCCCCCCCCccceeEEEECCCCcc
Q 044272 109 DEKDSSGKQLPSRALHIVGPDHQV 132 (133)
Q Consensus 109 ~~~~~~~~~~~~p~~~lid~~G~i 132 (133)
...|++++++ +|++
T Consensus 65 ---------~~~Pt~~~~~-~g~~ 78 (96)
T cd02956 65 ---------QALPTVYLFA-AGQP 78 (96)
T ss_pred ---------CCCCEEEEEe-CCEE
Confidence 4688888886 7764
No 71
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.08 E-value=1.1e-09 Score=66.74 Aligned_cols=73 Identities=12% Similarity=0.189 Sum_probs=51.8
Q ss_pred CCCeEEEEEeeCCCCchhHHHHHHH---HhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCCCceeeCCcHHHHHHcCC
Q 044272 29 GDNWTIIFSHPGDFTPVCTTELGKM---AAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPIIADPNREIIKQLNM 105 (133)
Q Consensus 29 ~~~~~vl~f~~~~~c~~C~~~~~~l---~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 105 (133)
.+++++|.|| ++||+.|+...+.+ .++.+.+++ ++.++.|..+..+. ....+.++|++
T Consensus 10 ~~k~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~-----------------~~~~~~~~~~i 70 (104)
T cd02953 10 QGKPVFVDFT-ADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDP-----------------EITALLKRFGV 70 (104)
T ss_pred cCCeEEEEEE-cchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCH-----------------HHHHHHHHcCC
Confidence 5567777766 89999999999877 455566654 67777777653110 12356677888
Q ss_pred CCCCCCCCCCCCccceeEEEECC-CCcc
Q 044272 106 VDPDEKDSSGKQLPSRALHIVGP-DHQV 132 (133)
Q Consensus 106 ~~~~~~~~~~~~~~~p~~~lid~-~G~i 132 (133)
..+|+++++++ +|++
T Consensus 71 ------------~~~Pti~~~~~~~g~~ 86 (104)
T cd02953 71 ------------FGPPTYLFYGPGGEPE 86 (104)
T ss_pred ------------CCCCEEEEECCCCCCC
Confidence 47999999998 7875
No 72
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.06 E-value=1.1e-09 Score=66.76 Aligned_cols=44 Identities=9% Similarity=0.156 Sum_probs=35.7
Q ss_pred CCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCC
Q 044272 29 GDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCD 73 (133)
Q Consensus 29 ~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d 73 (133)
.+++++|.|| ++||+.|+...+.+.++.+++++..++++.+..|
T Consensus 16 ~~~~vvv~F~-a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d 59 (102)
T cd02948 16 NKGLTVVDVY-QEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD 59 (102)
T ss_pred cCCeEEEEEE-CCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC
Confidence 4566777766 9999999999999999988887555777777777
No 73
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.00 E-value=2.8e-09 Score=66.04 Aligned_cols=42 Identities=17% Similarity=0.229 Sum_probs=33.5
Q ss_pred CCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCC
Q 044272 30 DNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCD 73 (133)
Q Consensus 30 ~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d 73 (133)
++++||.|| ++||+.|+...|.|.++.+++.+. +.++-|..|
T Consensus 14 ~~~vVV~F~-A~WCgpCk~m~P~le~la~~~~~~-v~f~kVDvD 55 (114)
T cd02954 14 EKVVVIRFG-RDWDPVCMQMDEVLAKIAEDVSNF-AVIYLVDID 55 (114)
T ss_pred CCEEEEEEE-CCCChhHHHHHHHHHHHHHHccCc-eEEEEEECC
Confidence 456767766 999999999999999998887633 677777776
No 74
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=98.98 E-value=3.7e-09 Score=64.77 Aligned_cols=69 Identities=16% Similarity=0.239 Sum_probs=52.2
Q ss_pred CCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCCCceeeCCcHHHHHHcCCCCC
Q 044272 29 GDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPIIADPNREIIKQLNMVDP 108 (133)
Q Consensus 29 ~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 108 (133)
.+++++|.|| ++||+.|+...+.+.++.+.++. .+.++.|..|.. ....+.+.|++
T Consensus 17 ~~~~~lv~f~-a~wC~~C~~~~~~~~~~a~~~~~-~~~~~~v~~~~~-------------------~~~~~~~~~~i--- 72 (109)
T cd03002 17 TNYTTLVEFY-APWCGHCKNLKPEYAKAAKELDG-LVQVAAVDCDED-------------------KNKPLCGKYGV--- 72 (109)
T ss_pred CCCeEEEEEE-CCCCHHHHhhChHHHHHHHHhcC-CceEEEEecCcc-------------------ccHHHHHHcCC---
Confidence 3455666666 89999999999999999888764 478888887741 13466777887
Q ss_pred CCCCCCCCCccceeEEEECCCC
Q 044272 109 DEKDSSGKQLPSRALHIVGPDH 130 (133)
Q Consensus 109 ~~~~~~~~~~~~p~~~lid~~G 130 (133)
...|+++++++++
T Consensus 73 ---------~~~Pt~~~~~~~~ 85 (109)
T cd03002 73 ---------QGFPTLKVFRPPK 85 (109)
T ss_pred ---------CcCCEEEEEeCCC
Confidence 3588888887775
No 75
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=98.96 E-value=4.6e-09 Score=63.60 Aligned_cols=68 Identities=7% Similarity=0.067 Sum_probs=48.1
Q ss_pred CCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCCCceeeCCcHHHHHHcCCCCC
Q 044272 29 GDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPIIADPNREIIKQLNMVDP 108 (133)
Q Consensus 29 ~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 108 (133)
+++ .+|.|| ++||+.|+...|.+.++.+.++..++.+..|..+ .+..+.+.|++
T Consensus 16 ~~~-~lv~f~-a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~---------------------~~~~~~~~~~i--- 69 (101)
T cd02994 16 EGE-WMIEFY-APWCPACQQLQPEWEEFADWSDDLGINVAKVDVT---------------------QEPGLSGRFFV--- 69 (101)
T ss_pred CCC-EEEEEE-CCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEcc---------------------CCHhHHHHcCC---
Confidence 555 556665 9999999999999999988766445666666533 23346677777
Q ss_pred CCCCCCCCCccceeEEEECCCCcc
Q 044272 109 DEKDSSGKQLPSRALHIVGPDHQV 132 (133)
Q Consensus 109 ~~~~~~~~~~~~p~~~lid~~G~i 132 (133)
...|+++++ ++|++
T Consensus 70 ---------~~~Pt~~~~-~~g~~ 83 (101)
T cd02994 70 ---------TALPTIYHA-KDGVF 83 (101)
T ss_pred ---------cccCEEEEe-CCCCE
Confidence 467888776 66753
No 76
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=98.96 E-value=1.3e-08 Score=62.47 Aligned_cols=79 Identities=10% Similarity=0.296 Sum_probs=65.7
Q ss_pred ceEEecCCC-eeecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeC--------CCHHHHHHHH
Q 044272 12 NLQVQTNQG-NFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSC--------DDVKSHNEWI 82 (133)
Q Consensus 12 ~f~l~~~~G-~~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~--------d~~~~~~~~~ 82 (133)
+|++.+.+| .++|+.+ +|+.++++-. ++-|..-. +...|++++++|+++|++|++.=. ++.+++++++
T Consensus 3 df~~~~~~G~~v~l~~y-~Gkv~LIVNv-As~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnqFg~QEp~~~~ei~~~~ 79 (108)
T PF00255_consen 3 DFSAKDIDGKPVSLSKY-KGKVLLIVNV-ASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQFGNQEPGSNEEIKEFC 79 (108)
T ss_dssp GSEEEBTTSSEEEGGGG-TTSEEEEEEE-ESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBSTTTTTTSSCHHHHHHHH
T ss_pred ceeeeCCCCCEECHHHc-CCCEEEEEec-ccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHHhccccCCCHHHHHHHH
Confidence 799999999 8999999 8888877777 66699888 999999999999999999999863 4677888888
Q ss_pred Hh-cCCCCceee
Q 044272 83 KD-IEAYTPIIA 93 (133)
Q Consensus 83 ~~-~~~~~~~~~ 93 (133)
.. ++..|++..
T Consensus 80 ~~~~~~~F~vf~ 91 (108)
T PF00255_consen 80 KEKFGVTFPVFE 91 (108)
T ss_dssp CHCHT-SSEEBS
T ss_pred HhccCCcccceE
Confidence 87 566665543
No 77
>PRK09381 trxA thioredoxin; Provisional
Probab=98.95 E-value=3.8e-09 Score=64.86 Aligned_cols=68 Identities=12% Similarity=0.179 Sum_probs=51.0
Q ss_pred CCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCCCceeeCCcHHHHHHcCCCCC
Q 044272 29 GDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPIIADPNREIIKQLNMVDP 108 (133)
Q Consensus 29 ~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 108 (133)
.+++++|.|| ++||+.|+...+.+.++.+++.+ ++.+..|..|. ...+.+.|++
T Consensus 20 ~~~~vvv~f~-~~~C~~C~~~~p~~~~l~~~~~~-~~~~~~vd~~~---------------------~~~~~~~~~v--- 73 (109)
T PRK09381 20 ADGAILVDFW-AEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQ---------------------NPGTAPKYGI--- 73 (109)
T ss_pred CCCeEEEEEE-CCCCHHHHHHhHHHHHHHHHhCC-CcEEEEEECCC---------------------ChhHHHhCCC---
Confidence 3566777766 88999999999999999998875 47788877653 2235567777
Q ss_pred CCCCCCCCCccceeEEEECCCCcc
Q 044272 109 DEKDSSGKQLPSRALHIVGPDHQV 132 (133)
Q Consensus 109 ~~~~~~~~~~~~p~~~lid~~G~i 132 (133)
...|+++++ ++|++
T Consensus 74 ---------~~~Pt~~~~-~~G~~ 87 (109)
T PRK09381 74 ---------RGIPTLLLF-KNGEV 87 (109)
T ss_pred ---------CcCCEEEEE-eCCeE
Confidence 368888877 57765
No 78
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.95 E-value=1.4e-08 Score=68.57 Aligned_cols=122 Identities=15% Similarity=0.293 Sum_probs=94.7
Q ss_pred CceEEecCCCeeecccccCCCeE-EEE-Eee----CCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHh
Q 044272 11 PNLQVQTNQGNFKLHDFIGDNWT-IIF-SHP----GDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKD 84 (133)
Q Consensus 11 p~f~l~~~~G~~~l~d~~~~~~~-vl~-f~~----~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~ 84 (133)
.++.+...+|+.+|+|+.+|+-. +|+ |++ ...||.|...+.++.-....+...++.+++||.-+.+.+..|.++
T Consensus 53 K~Y~Fe~~~G~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~dv~lv~VsRAPl~~l~~~k~r 132 (247)
T COG4312 53 KDYVFETENGKKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHHDVTLVAVSRAPLEELVAYKRR 132 (247)
T ss_pred ceeEeecCCcchhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhcCceEEEEecCcHHHHHHHHHh
Confidence 36777788899999998877633 333 332 346999999999998888899999999999999999999999999
Q ss_pred cCCCCceeeCCcHHHHHHcCCCCCCCC-------------CCCCCCccceeEEEECCCCcc
Q 044272 85 IEAYTPIIADPNREIIKQLNMVDPDEK-------------DSSGKQLPSRALHIVGPDHQV 132 (133)
Q Consensus 85 ~~~~~~~~~d~~~~~~~~~~~~~~~~~-------------~~~~~~~~~p~~~lid~~G~i 132 (133)
+|+.++.+++.++.+.+.|.+.-.+.. ...|...+.-+.|.=+++|.|
T Consensus 133 mGW~f~w~Ss~~s~Fn~Df~vsf~~~q~~~G~~~yn~~~~~~~~rd~~G~~vF~~~e~g~v 193 (247)
T COG4312 133 MGWQFPWVSSTDSDFNRDFQVSFTEDQQAPGVVVYNFERTPPTGRDLPGISVFYSDEDGRV 193 (247)
T ss_pred cCCcceeEeccCcccccccccccchhhccCceeEeecccCCCccccCCCeeEEEEcCCCcc
Confidence 999999999999889999977432211 122334455667776777765
No 79
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=98.94 E-value=8.2e-09 Score=63.53 Aligned_cols=45 Identities=13% Similarity=0.279 Sum_probs=37.1
Q ss_pred CCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCC
Q 044272 29 GDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDD 74 (133)
Q Consensus 29 ~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~ 74 (133)
.+++++|.|| ++||++|+...+.+.++.+.+++.++.+..|..|.
T Consensus 20 ~~k~vlv~f~-a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~ 64 (109)
T cd02993 20 RNQSTLVVLY-APWCPFCQAMEASYEELAEKLAGSNVKVAKFNADG 64 (109)
T ss_pred cCCCEEEEEE-CCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCc
Confidence 3566666665 99999999999999999999886678888888774
No 80
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=98.93 E-value=6.7e-09 Score=63.33 Aligned_cols=65 Identities=8% Similarity=0.061 Sum_probs=45.4
Q ss_pred CCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcC--ceEEEEeCCCHHHHHHHHHhcCCCCceeeCCcHHHHHHcCCC
Q 044272 29 GDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKRE--VKLLGLSCDDVKSHNEWIKDIEAYTPIIADPNREIIKQLNMV 106 (133)
Q Consensus 29 ~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~--v~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 106 (133)
++++++|.| +++||+.|+...+.+.++.+++++.+ +.+..+..+. ...+.+.|++
T Consensus 14 ~~~~vlv~f-~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~---------------------~~~~~~~~~I- 70 (104)
T cd03000 14 KEDIWLVDF-YAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATA---------------------YSSIASEFGV- 70 (104)
T ss_pred cCCeEEEEE-ECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECcc---------------------CHhHHhhcCC-
Confidence 445555555 49999999999999999999887654 4444454432 2355667777
Q ss_pred CCCCCCCCCCCccceeEEEEC
Q 044272 107 DPDEKDSSGKQLPSRALHIVG 127 (133)
Q Consensus 107 ~~~~~~~~~~~~~~p~~~lid 127 (133)
...|++++++
T Consensus 71 -----------~~~Pt~~l~~ 80 (104)
T cd03000 71 -----------RGYPTIKLLK 80 (104)
T ss_pred -----------ccccEEEEEc
Confidence 3678888774
No 81
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.92 E-value=5.4e-09 Score=65.26 Aligned_cols=43 Identities=9% Similarity=0.111 Sum_probs=31.5
Q ss_pred CCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCC
Q 044272 29 GDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCD 73 (133)
Q Consensus 29 ~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d 73 (133)
.+++++|.|+ ++||+.|+...+.+.+..+... .+..++.|..|
T Consensus 18 ~~kpVlV~F~-a~WC~~C~~~~~~~~~~~~~~~-~~~~fv~v~vd 60 (117)
T cd02959 18 SGKPLMLLIH-KTWCGACKALKPKFAESKEISE-LSHNFVMVNLE 60 (117)
T ss_pred cCCcEEEEEe-CCcCHHHHHHHHHHhhhHHHHh-hcCcEEEEEec
Confidence 5677777776 9999999999999988655433 33556666665
No 82
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=98.92 E-value=1.2e-08 Score=61.83 Aligned_cols=44 Identities=11% Similarity=0.197 Sum_probs=34.6
Q ss_pred CCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCC
Q 044272 29 GDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDD 74 (133)
Q Consensus 29 ~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~ 74 (133)
.++.++|.|| ++||+.|+...+.+.++.++++.. +.+..|..|.
T Consensus 17 ~~~~~~v~f~-a~wC~~C~~~~p~~~~~a~~~~~~-~~~~~vd~~~ 60 (101)
T cd03003 17 SGEIWFVNFY-SPRCSHCHDLAPTWREFAKEMDGV-IRIGAVNCGD 60 (101)
T ss_pred CCCeEEEEEE-CCCChHHHHhHHHHHHHHHHhcCc-eEEEEEeCCc
Confidence 4455666665 999999999999999999888743 7777888763
No 83
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.90 E-value=7.2e-09 Score=64.77 Aligned_cols=77 Identities=12% Similarity=0.121 Sum_probs=57.5
Q ss_pred CCCeEEEEEeeC-------CCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCCCceeeCCcHHHHH
Q 044272 29 GDNWTIIFSHPG-------DFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPIIADPNREIIK 101 (133)
Q Consensus 29 ~~~~~vl~f~~~-------~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 101 (133)
+|++++|.|| + +||+.|+...|.|.++.++++. ++.++-|..|... ...|++..++.
T Consensus 20 ~~~~vvV~F~-A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~-~v~fv~Vdvd~~~--------------~w~d~~~~~~~ 83 (119)
T cd02952 20 EGKPIFILFY-GDKDPDGQSWCPDCVKAEPVVREALKAAPE-DCVFIYCDVGDRP--------------YWRDPNNPFRT 83 (119)
T ss_pred CCCeEEEEEE-ccCCCCCCCCCHhHHhhchhHHHHHHHCCC-CCEEEEEEcCCcc--------------cccCcchhhHh
Confidence 4678888887 6 9999999999999999888763 4888888887432 22344567778
Q ss_pred HcCCCCCCCCCCCCCCccceeEEEECCCCcc
Q 044272 102 QLNMVDPDEKDSSGKQLPSRALHIVGPDHQV 132 (133)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i 132 (133)
.|++. ..+|+.++++..++|
T Consensus 84 ~~~I~-----------~~iPT~~~~~~~~~l 103 (119)
T cd02952 84 DPKLT-----------TGVPTLLRWKTPQRL 103 (119)
T ss_pred ccCcc-----------cCCCEEEEEcCCcee
Confidence 88882 058888888766665
No 84
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=3e-08 Score=64.41 Aligned_cols=122 Identities=14% Similarity=0.225 Sum_probs=85.8
Q ss_pred CCCCCceEEecCCC-eeecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeC--------CCHHH
Q 044272 7 GDSVPNLQVQTNQG-NFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSC--------DDVKS 77 (133)
Q Consensus 7 G~~~p~f~l~~~~G-~~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~--------d~~~~ 77 (133)
-..+-+|+..|.+| .++|+.| +|+.++++-. ++.|..-...-.+|+++++.|++.|+.|++.-. .+.++
T Consensus 11 ~~siydf~~~d~~G~~v~l~~y-rGkV~LiVNV-AS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~E 88 (171)
T KOG1651|consen 11 KGSIYDFSAKDLDGEYVSLSQY-RGKVVLIVNV-ASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNEE 88 (171)
T ss_pred hcceeeeEEecCCCCCccHHHh-CCeEEEEEEc-ccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCcHH
Confidence 34667999999999 8999999 8887777666 788999888889999999999999999999863 34566
Q ss_pred HHHHH-HhcCCCCceee------CCcHHHHHHcCCCCCCCCCCCC-CCccceeEEEECCCCccC
Q 044272 78 HNEWI-KDIEAYTPIIA------DPNREIIKQLNMVDPDEKDSSG-KQLPSRALHIVGPDHQVQ 133 (133)
Q Consensus 78 ~~~~~-~~~~~~~~~~~------d~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~lid~~G~i~ 133 (133)
+..++ .+++..+++.. +....+.+-+...... .-| ...=.=+-||||+||+++
T Consensus 89 i~~f~~~r~~~~f~if~KidVNG~~~~PlykfLK~~~~~---~lg~~IkWNF~KFLVd~~G~vv 149 (171)
T KOG1651|consen 89 ILNFVKVRYGAEFPIFQKIDVNGDNADPLYKFLKKVKGG---PLGDDIKWNFTKFLVDKDGHVV 149 (171)
T ss_pred HHHHHHhccCCCCccEeEEecCCCCCchHHHHHhhcCCC---cccccceeeeEEEeECCCCcEE
Confidence 66665 56676665544 1223444443332211 011 111344689999999874
No 85
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=98.88 E-value=2e-08 Score=62.35 Aligned_cols=81 Identities=19% Similarity=0.317 Sum_probs=66.8
Q ss_pred HHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCCCceeeCCcHHHHHHcCCCCCCCC---------------------
Q 044272 53 MAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPIIADPNREIIKQLNMVDPDEK--------------------- 111 (133)
Q Consensus 53 l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~--------------------- 111 (133)
|.+..+++++.|+++|+|+.++++..++|++..+.+++++.|++.++++.+|+......
T Consensus 2 L~~~~~~l~~~gv~lv~I~~g~~~~~~~f~~~~~~p~~ly~D~~~~lY~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (115)
T PF13911_consen 2 LSRRKPELEAAGVKLVVIGCGSPEGIEKFCELTGFPFPLYVDPERKLYKALGLKRGLKWSLLPPALWSGLSNIVQSAKNG 81 (115)
T ss_pred hhHhHHHHHHcCCeEEEEEcCCHHHHHHHHhccCCCCcEEEeCcHHHHHHhCCccccccCCCchHHHHHHHHHHHHHHHc
Confidence 56667888889999999999999789999999999999999999999999999752210
Q ss_pred ----CC-CCCCccceeEEEECCCCccC
Q 044272 112 ----DS-SGKQLPSRALHIVGPDHQVQ 133 (133)
Q Consensus 112 ----~~-~~~~~~~p~~~lid~~G~i~ 133 (133)
.. .|.....+++||+|++|+|+
T Consensus 82 ~~~~~~~~g~~~q~GG~fv~d~~g~v~ 108 (115)
T PF13911_consen 82 GIPGNKDQGDGWQLGGTFVFDPGGKVL 108 (115)
T ss_pred CCCCcccCCCceecCeEEEEcCCCeEE
Confidence 01 35556788899999999873
No 86
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=98.88 E-value=2.2e-08 Score=60.90 Aligned_cols=43 Identities=12% Similarity=0.166 Sum_probs=33.2
Q ss_pred CCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCC
Q 044272 29 GDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCD 73 (133)
Q Consensus 29 ~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d 73 (133)
.+++++|.|| ++||+.|+...+.+.++.++++. .+.+..|..+
T Consensus 18 ~~~~v~v~f~-a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~ 60 (104)
T cd03004 18 RKEPWLVDFY-APWCGPCQALLPELRKAARALKG-KVKVGSVDCQ 60 (104)
T ss_pred CCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CcEEEEEECC
Confidence 3456666665 99999999999999999888753 4777777665
No 87
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=98.86 E-value=1.1e-08 Score=61.72 Aligned_cols=65 Identities=14% Similarity=0.255 Sum_probs=47.3
Q ss_pred eEEEEEeeCCCCchhHHHHHHHHhhhhHHHH--cCceEEEEeCCCHHHHHHHHHhcCCCCceeeCCcHHHHHHcCCCCCC
Q 044272 32 WTIIFSHPGDFTPVCTTELGKMAAYVPEFDK--REVKLLGLSCDDVKSHNEWIKDIEAYTPIIADPNREIIKQLNMVDPD 109 (133)
Q Consensus 32 ~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~--~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 109 (133)
+++|.|| ++||+.|+...+.+.++.++++. ..+.++.|..+ ....+.+.|++
T Consensus 18 ~~lv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~---------------------~~~~~~~~~~v---- 71 (102)
T cd03005 18 NHFVKFF-APWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCT---------------------QHRELCSEFQV---- 71 (102)
T ss_pred CEEEEEE-CCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECC---------------------CChhhHhhcCC----
Confidence 4666665 99999999999999999999875 24666666543 23356677777
Q ss_pred CCCCCCCCccceeEEEECCCCc
Q 044272 110 EKDSSGKQLPSRALHIVGPDHQ 131 (133)
Q Consensus 110 ~~~~~~~~~~~p~~~lid~~G~ 131 (133)
...|+++++ ++|+
T Consensus 72 --------~~~Pt~~~~-~~g~ 84 (102)
T cd03005 72 --------RGYPTLLLF-KDGE 84 (102)
T ss_pred --------CcCCEEEEE-eCCC
Confidence 367888877 4564
No 88
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=98.85 E-value=3.6e-08 Score=60.42 Aligned_cols=68 Identities=9% Similarity=0.136 Sum_probs=45.7
Q ss_pred CCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHc-----CceEEEEeCCCHHHHHHHHHhcCCCCceeeCCcHHHHHHc
Q 044272 29 GDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKR-----EVKLLGLSCDDVKSHNEWIKDIEAYTPIIADPNREIIKQL 103 (133)
Q Consensus 29 ~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~-----~v~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 103 (133)
.+++++|.|| ++||+.|+...+.+.++.+.+++. .+.+..|.. |.+..+.++|
T Consensus 17 ~~~~vlv~F~-a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~---------------------d~~~~l~~~~ 74 (108)
T cd02996 17 SAELVLVNFY-ADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDC---------------------DKESDIADRY 74 (108)
T ss_pred cCCEEEEEEE-CCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEEC---------------------CCCHHHHHhC
Confidence 3445555555 999999999999999988877542 134444444 3345677777
Q ss_pred CCCCCCCCCCCCCCccceeEEEECCCCc
Q 044272 104 NMVDPDEKDSSGKQLPSRALHIVGPDHQ 131 (133)
Q Consensus 104 ~~~~~~~~~~~~~~~~~p~~~lid~~G~ 131 (133)
++ ...|+++++ ++|+
T Consensus 75 ~v------------~~~Ptl~~~-~~g~ 89 (108)
T cd02996 75 RI------------NKYPTLKLF-RNGM 89 (108)
T ss_pred CC------------CcCCEEEEE-eCCc
Confidence 77 357777777 5665
No 89
>PRK10996 thioredoxin 2; Provisional
Probab=98.83 E-value=2.6e-08 Score=64.01 Aligned_cols=68 Identities=15% Similarity=0.186 Sum_probs=50.0
Q ss_pred CCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCCCceeeCCcHHHHHHcCCCCC
Q 044272 29 GDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPIIADPNREIIKQLNMVDP 108 (133)
Q Consensus 29 ~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 108 (133)
.++.++|+|| ++||+.|+...+.|.++.+++.+ ++.++.|..+ ....+.++|++
T Consensus 51 ~~k~vvv~F~-a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~---------------------~~~~l~~~~~V--- 104 (139)
T PRK10996 51 DDLPVVIDFW-APWCGPCRNFAPIFEDVAAERSG-KVRFVKVNTE---------------------AERELSARFRI--- 104 (139)
T ss_pred CCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhCC-CeEEEEEeCC---------------------CCHHHHHhcCC---
Confidence 3556666665 99999999999999998877654 4777666553 24567788888
Q ss_pred CCCCCCCCCccceeEEEECCCCcc
Q 044272 109 DEKDSSGKQLPSRALHIVGPDHQV 132 (133)
Q Consensus 109 ~~~~~~~~~~~~p~~~lid~~G~i 132 (133)
..+|++++++ +|++
T Consensus 105 ---------~~~Ptlii~~-~G~~ 118 (139)
T PRK10996 105 ---------RSIPTIMIFK-NGQV 118 (139)
T ss_pred ---------CccCEEEEEE-CCEE
Confidence 3688887774 7765
No 90
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=98.83 E-value=2.9e-08 Score=59.78 Aligned_cols=68 Identities=16% Similarity=0.347 Sum_probs=48.7
Q ss_pred CCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCCCceeeCCcHHHHHHcCCCCC
Q 044272 29 GDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPIIADPNREIIKQLNMVDP 108 (133)
Q Consensus 29 ~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 108 (133)
.+++++++| +++||+.|+...+.+.++.+++.+ ++.++.|..|. +.++.+.+++
T Consensus 12 ~~~~vlv~f-~a~~C~~C~~~~~~l~~l~~~~~~-~v~~~~id~d~---------------------~~~l~~~~~v--- 65 (97)
T cd02949 12 SDRLILVLY-TSPTCGPCRTLKPILNKVIDEFDG-AVHFVEIDIDE---------------------DQEIAEAAGI--- 65 (97)
T ss_pred CCCeEEEEE-ECCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECCC---------------------CHHHHHHCCC---
Confidence 344555555 599999999999999998877753 46676666552 3356677777
Q ss_pred CCCCCCCCCccceeEEEECCCCcc
Q 044272 109 DEKDSSGKQLPSRALHIVGPDHQV 132 (133)
Q Consensus 109 ~~~~~~~~~~~~p~~~lid~~G~i 132 (133)
..+|++++++ +|++
T Consensus 66 ---------~~vPt~~i~~-~g~~ 79 (97)
T cd02949 66 ---------MGTPTVQFFK-DKEL 79 (97)
T ss_pred ---------eeccEEEEEE-CCeE
Confidence 4688888885 6765
No 91
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=98.81 E-value=2.8e-08 Score=64.69 Aligned_cols=45 Identities=9% Similarity=0.133 Sum_probs=37.0
Q ss_pred CCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCH
Q 044272 30 DNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDV 75 (133)
Q Consensus 30 ~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~ 75 (133)
++.++|.|| ++||+.|+...+.+.++.+++++.+++++.|..|..
T Consensus 47 ~~~vvV~Fy-a~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~ 91 (152)
T cd02962 47 RVTWLVEFF-TTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRF 91 (152)
T ss_pred CCEEEEEEE-CCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCC
Confidence 445666665 899999999999999999888766799999988743
No 92
>PTZ00051 thioredoxin; Provisional
Probab=98.80 E-value=3.9e-08 Score=59.09 Aligned_cols=66 Identities=11% Similarity=0.194 Sum_probs=47.8
Q ss_pred CCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCCCceeeCCcHHHHHHcCCCCCC
Q 044272 30 DNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPIIADPNREIIKQLNMVDPD 109 (133)
Q Consensus 30 ~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 109 (133)
+++++|.|| ++||+.|+...+.+.++.+++. ++.++.|..+ ....+.+.|++
T Consensus 18 ~~~vli~f~-~~~C~~C~~~~~~l~~l~~~~~--~~~~~~vd~~---------------------~~~~~~~~~~v---- 69 (98)
T PTZ00051 18 NELVIVDFY-AEWCGPCKRIAPFYEECSKEYT--KMVFVKVDVD---------------------ELSEVAEKENI---- 69 (98)
T ss_pred CCeEEEEEE-CCCCHHHHHHhHHHHHHHHHcC--CcEEEEEECc---------------------chHHHHHHCCC----
Confidence 455666655 9999999999999998877653 5777766553 23467788888
Q ss_pred CCCCCCCCccceeEEEECCCCcc
Q 044272 110 EKDSSGKQLPSRALHIVGPDHQV 132 (133)
Q Consensus 110 ~~~~~~~~~~~p~~~lid~~G~i 132 (133)
...|+++++ ++|++
T Consensus 70 --------~~~Pt~~~~-~~g~~ 83 (98)
T PTZ00051 70 --------TSMPTFKVF-KNGSV 83 (98)
T ss_pred --------ceeeEEEEE-eCCeE
Confidence 468887666 68765
No 93
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=98.78 E-value=4.9e-08 Score=58.50 Aligned_cols=67 Identities=9% Similarity=0.154 Sum_probs=48.4
Q ss_pred CCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCCCceeeCCcHHHHHHcCCCCCC
Q 044272 30 DNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPIIADPNREIIKQLNMVDPD 109 (133)
Q Consensus 30 ~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 109 (133)
+++++|.|| ++||+.|+...+.|.++.+++ ..++.++.|..+ ...++.+.|++
T Consensus 14 ~~~v~v~f~-~~~C~~C~~~~~~l~~l~~~~-~~~i~~~~vd~~---------------------~~~~~~~~~~i---- 66 (97)
T cd02984 14 SKLLVLHFW-APWAEPCKQMNQVFEELAKEA-FPSVLFLSIEAE---------------------ELPEISEKFEI---- 66 (97)
T ss_pred CCEEEEEEE-CCCCHHHHHHhHHHHHHHHHh-CCceEEEEEccc---------------------cCHHHHHhcCC----
Confidence 456666666 999999999999999888776 235666666432 23467788888
Q ss_pred CCCCCCCCccceeEEEECCCCcc
Q 044272 110 EKDSSGKQLPSRALHIVGPDHQV 132 (133)
Q Consensus 110 ~~~~~~~~~~~p~~~lid~~G~i 132 (133)
...|++++++ +|++
T Consensus 67 --------~~~Pt~~~~~-~g~~ 80 (97)
T cd02984 67 --------TAVPTFVFFR-NGTI 80 (97)
T ss_pred --------ccccEEEEEE-CCEE
Confidence 4688888884 7764
No 94
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.77 E-value=5.9e-08 Score=66.66 Aligned_cols=82 Identities=18% Similarity=0.340 Sum_probs=60.2
Q ss_pred eecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCCCceeeCCcHHHHH
Q 044272 22 FKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPIIADPNREIIK 101 (133)
Q Consensus 22 ~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 101 (133)
-.+.++ .+++.+++||.++ |++|....+-|..+.+++ |+.|+.||.|....- .++-.. .+..+++
T Consensus 113 ~~l~~l-a~~~gL~~F~~~~-C~~C~~~~pil~~~~~~y---g~~v~~vs~DG~~~~---------~fp~~~-~~~g~~~ 177 (215)
T PF13728_consen 113 KALKQL-AQKYGLFFFYRSD-CPYCQQQAPILQQFADKY---GFSVIPVSLDGRPIP---------SFPNPR-PDPGQAK 177 (215)
T ss_pred HHHHHH-hhCeEEEEEEcCC-CchhHHHHHHHHHHHHHh---CCEEEEEecCCCCCc---------CCCCCC-CCHHHHH
Confidence 344555 5677888888665 999999999999987776 899999999832110 111111 1566788
Q ss_pred HcCCCCCCCCCCCCCCccceeEEEECCCC
Q 044272 102 QLNMVDPDEKDSSGKQLPSRALHIVGPDH 130 (133)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~p~~~lid~~G 130 (133)
.||+ ..+|++|||++++
T Consensus 178 ~l~v------------~~~Pal~Lv~~~~ 194 (215)
T PF13728_consen 178 RLGV------------KVTPALFLVNPNT 194 (215)
T ss_pred HcCC------------CcCCEEEEEECCC
Confidence 8999 4799999999987
No 95
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=98.76 E-value=5.5e-08 Score=58.54 Aligned_cols=69 Identities=4% Similarity=0.114 Sum_probs=49.4
Q ss_pred CCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcC-ceEEEEeCCCHHHHHHHHHhcCCCCceeeCCcHHHHHHcCCCC
Q 044272 29 GDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKRE-VKLLGLSCDDVKSHNEWIKDIEAYTPIIADPNREIIKQLNMVD 107 (133)
Q Consensus 29 ~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~-v~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 107 (133)
++++++|.|| ++||+.|+...+.+.++.+.++..+ +.++.+..+ ....+.+.|++
T Consensus 12 ~~~~~~i~f~-~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~---------------------~~~~~~~~~~i-- 67 (102)
T TIGR01126 12 SNKDVLVEFY-APWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDAT---------------------AEKDLASRFGV-- 67 (102)
T ss_pred cCCcEEEEEE-CCCCHHHHhhChHHHHHHHHhccCCceEEEEEEcc---------------------chHHHHHhCCC--
Confidence 4556667766 8899999999999999888886543 555444432 23466777887
Q ss_pred CCCCCCCCCCccceeEEEECCCCc
Q 044272 108 PDEKDSSGKQLPSRALHIVGPDHQ 131 (133)
Q Consensus 108 ~~~~~~~~~~~~~p~~~lid~~G~ 131 (133)
...|+++++++++.
T Consensus 68 ----------~~~P~~~~~~~~~~ 81 (102)
T TIGR01126 68 ----------SGFPTIKFFPKGKK 81 (102)
T ss_pred ----------CcCCEEEEecCCCc
Confidence 36888888887763
No 96
>PHA02278 thioredoxin-like protein
Probab=98.76 E-value=5.2e-08 Score=59.49 Aligned_cols=43 Identities=16% Similarity=0.146 Sum_probs=33.2
Q ss_pred CCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCC
Q 044272 29 GDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCD 73 (133)
Q Consensus 29 ~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d 73 (133)
.+++++|+|| ++||++|+...|.+.++.+++.. .+.++.|..|
T Consensus 13 ~~~~vvV~F~-A~WCgpCk~m~p~l~~l~~~~~~-~~~~~~vdvd 55 (103)
T PHA02278 13 QKKDVIVMIT-QDNCGKCEILKSVIPMFQESGDI-KKPILTLNLD 55 (103)
T ss_pred CCCcEEEEEE-CCCCHHHHhHHHHHHHHHhhhcC-CceEEEEECC
Confidence 4567777776 99999999999999998766432 3667777776
No 97
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=98.75 E-value=8.5e-08 Score=58.01 Aligned_cols=71 Identities=7% Similarity=0.176 Sum_probs=47.5
Q ss_pred CCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHc-CceEEEEeCCCHHHHHHHHHhcCCCCceeeCCcHHHHHHcCCCC
Q 044272 29 GDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKR-EVKLLGLSCDDVKSHNEWIKDIEAYTPIIADPNREIIKQLNMVD 107 (133)
Q Consensus 29 ~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~-~v~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 107 (133)
.+++++|.|| ++||+.|+...+.+.++.+.+++. .+.++.|..+. +....+.+.|++
T Consensus 16 ~~~~~~v~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~-------------------~~~~~~~~~~~i-- 73 (104)
T cd02997 16 KEKHVLVMFY-APWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTK-------------------PEHDALKEEYNV-- 73 (104)
T ss_pred hCCCEEEEEE-CCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCC-------------------CccHHHHHhCCC--
Confidence 4456666665 999999999999999998888743 34555554442 124456777777
Q ss_pred CCCCCCCCCCccceeEEEECCCCcc
Q 044272 108 PDEKDSSGKQLPSRALHIVGPDHQV 132 (133)
Q Consensus 108 ~~~~~~~~~~~~~p~~~lid~~G~i 132 (133)
..+|+++++ ++|++
T Consensus 74 ----------~~~Pt~~~~-~~g~~ 87 (104)
T cd02997 74 ----------KGFPTFKYF-ENGKF 87 (104)
T ss_pred ----------ccccEEEEE-eCCCe
Confidence 357776555 46653
No 98
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=3.7e-08 Score=63.27 Aligned_cols=43 Identities=19% Similarity=0.271 Sum_probs=35.8
Q ss_pred CCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCC
Q 044272 29 GDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCD 73 (133)
Q Consensus 29 ~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d 73 (133)
.+++|+|.|| +.||..|+...|.|+++..+++.+ +++.-|..|
T Consensus 60 S~~PVlVdF~-A~WCgPCk~l~P~l~~~~~~~~g~-~k~~kvdtD 102 (150)
T KOG0910|consen 60 SDVPVLVDFH-AEWCGPCKMLGPILEELVSEYAGK-FKLYKVDTD 102 (150)
T ss_pred cCCCEEEEEe-cCcCccHhHhhHHHHHHHHhhcCe-EEEEEEccc
Confidence 5578999987 999999999999999998888543 777766665
No 99
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=98.74 E-value=6.6e-08 Score=58.50 Aligned_cols=68 Identities=10% Similarity=0.173 Sum_probs=48.6
Q ss_pred CCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHH-cCceEEEEeCCCHHHHHHHHHhcCCCCceeeCCcHHHHHHcCCCCC
Q 044272 30 DNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDK-REVKLLGLSCDDVKSHNEWIKDIEAYTPIIADPNREIIKQLNMVDP 108 (133)
Q Consensus 30 ~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~-~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 108 (133)
++++++.|| ++||+.|+...+.+.++.+.++. .++.++.|..+.+ ...+.+.|++
T Consensus 18 ~~~~~v~f~-a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--------------------~~~~~~~~~i--- 73 (105)
T cd02998 18 KKDVLVEFY-APWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEA--------------------NKDLAKKYGV--- 73 (105)
T ss_pred CCcEEEEEE-CCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCc--------------------chhhHHhCCC---
Confidence 345666665 99999999999999999888862 3466666665431 2356677777
Q ss_pred CCCCCCCCCccceeEEEECCCC
Q 044272 109 DEKDSSGKQLPSRALHIVGPDH 130 (133)
Q Consensus 109 ~~~~~~~~~~~~p~~~lid~~G 130 (133)
..+|++++++++|
T Consensus 74 ---------~~~P~~~~~~~~~ 86 (105)
T cd02998 74 ---------SGFPTLKFFPKGS 86 (105)
T ss_pred ---------CCcCEEEEEeCCC
Confidence 3578888887665
No 100
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=98.73 E-value=1e-07 Score=59.19 Aligned_cols=46 Identities=4% Similarity=0.146 Sum_probs=35.3
Q ss_pred CCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHH
Q 044272 29 GDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVK 76 (133)
Q Consensus 29 ~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~ 76 (133)
.++.++|.|| ++||++|+...|.+.++.+.+++. +.+..|..|...
T Consensus 28 ~~~~vlV~Fy-A~WC~~Ck~l~p~~~~la~~~~~~-v~~~~Vd~d~~~ 73 (113)
T cd03006 28 DAEVSLVMYY-APWDAQSQAARQEFEQVAQKLSDQ-VLFVAINCWWPQ 73 (113)
T ss_pred CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhcCC-eEEEEEECCCCh
Confidence 4455555555 999999999999999999888653 777888776433
No 101
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.73 E-value=1.2e-07 Score=56.58 Aligned_cols=68 Identities=7% Similarity=0.153 Sum_probs=49.4
Q ss_pred CCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHH-HcCceEEEEeCCCHHHHHHHHHhcCCCCceeeCCcHHHHHHcCCCC
Q 044272 29 GDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFD-KREVKLLGLSCDDVKSHNEWIKDIEAYTPIIADPNREIIKQLNMVD 107 (133)
Q Consensus 29 ~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~-~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 107 (133)
+++++++.|| +.||+.|+...+.+.++.+.++ ..++.++.|..+. ...+.+.|++
T Consensus 14 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---------------------~~~~~~~~~i-- 69 (101)
T cd02961 14 DSKDVLVEFY-APWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA---------------------NNDLCSEYGV-- 69 (101)
T ss_pred CCCcEEEEEE-CCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc---------------------hHHHHHhCCC--
Confidence 3345666655 8899999999999999888875 3457777776442 3466777777
Q ss_pred CCCCCCCCCCccceeEEEECCCC
Q 044272 108 PDEKDSSGKQLPSRALHIVGPDH 130 (133)
Q Consensus 108 ~~~~~~~~~~~~~p~~~lid~~G 130 (133)
...|++++++++|
T Consensus 70 ----------~~~Pt~~~~~~~~ 82 (101)
T cd02961 70 ----------RGYPTIKLFPNGS 82 (101)
T ss_pred ----------CCCCEEEEEcCCC
Confidence 3688888887774
No 102
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=7.3e-08 Score=59.10 Aligned_cols=43 Identities=16% Similarity=0.315 Sum_probs=35.9
Q ss_pred CCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCC
Q 044272 29 GDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDD 74 (133)
Q Consensus 29 ~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~ 74 (133)
+++.+|+.| +++||+.|+...|.+.++..+|.+ +.++-|..|.
T Consensus 20 ~~kliVvdF-~a~wCgPCk~i~P~~~~La~~y~~--v~Flkvdvde 62 (106)
T KOG0907|consen 20 GDKLVVVDF-YATWCGPCKAIAPKFEKLAEKYPD--VVFLKVDVDE 62 (106)
T ss_pred CCCeEEEEE-ECCCCcchhhhhhHHHHHHHHCCC--CEEEEEeccc
Confidence 346666666 599999999999999999999884 8888888874
No 103
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.68 E-value=9.6e-08 Score=66.67 Aligned_cols=81 Identities=15% Similarity=0.288 Sum_probs=58.3
Q ss_pred ecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCCCceeeCCcHHHHHH
Q 044272 23 KLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPIIADPNREIIKQ 102 (133)
Q Consensus 23 ~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 102 (133)
.+.++ .+++.+++||.+. ||+|....|.|..+.+++ |+.|+.||.|-.-. ..+|-.. ++...+..
T Consensus 137 ~i~~l-a~~~GL~fFy~s~-Cp~C~~~aPil~~fa~~y---g~~v~~VS~DG~~~---------p~fp~~~-~d~gqa~~ 201 (248)
T PRK13703 137 AIAKL-AEHYGLMFFYRGQ-DPIDGQLAQVINDFRDTY---GLSVIPVSVDGVIN---------PLLPDSR-TDQGQAQR 201 (248)
T ss_pred HHHHH-HhcceEEEEECCC-CchhHHHHHHHHHHHHHh---CCeEEEEecCCCCC---------CCCCCCc-cChhHHHh
Confidence 35556 5567888888765 999999999999987766 79999999983210 0122211 23345578
Q ss_pred cCCCCCCCCCCCCCCccceeEEEECCCC
Q 044272 103 LNMVDPDEKDSSGKQLPSRALHIVGPDH 130 (133)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~p~~~lid~~G 130 (133)
+|+ ..+|++|||+++.
T Consensus 202 l~v------------~~~PAl~Lv~~~t 217 (248)
T PRK13703 202 LGV------------KYFPALMLVDPKS 217 (248)
T ss_pred cCC------------cccceEEEEECCC
Confidence 888 4789999999985
No 104
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=98.67 E-value=1.4e-07 Score=59.31 Aligned_cols=41 Identities=12% Similarity=0.255 Sum_probs=32.4
Q ss_pred CCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCC
Q 044272 29 GDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCD 73 (133)
Q Consensus 29 ~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d 73 (133)
.++.++++|+ ++|||.|+...|.|.++.++ .++.+.-|..|
T Consensus 22 ~~~~~iv~f~-~~~Cp~C~~~~P~l~~~~~~---~~~~~y~vdvd 62 (122)
T TIGR01295 22 KKETATFFIG-RKTCPYCRKFSGTLSGVVAQ---TKAPIYYIDSE 62 (122)
T ss_pred cCCcEEEEEE-CCCChhHHHHhHHHHHHHHh---cCCcEEEEECC
Confidence 3455666665 88999999999999998765 35778888887
No 105
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.66 E-value=1.5e-07 Score=66.08 Aligned_cols=81 Identities=16% Similarity=0.299 Sum_probs=59.2
Q ss_pred ecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCCCceeeCCcHHHHHH
Q 044272 23 KLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPIIADPNREIIKQ 102 (133)
Q Consensus 23 ~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 102 (133)
.+.++ .+++.+++||.+. |++|....+.|..+.+++ |+.|+.||.|..-.- .+|-.. ++...+..
T Consensus 144 ~i~~l-a~~~gL~fFy~~~-C~~C~~~apil~~fa~~y---gi~v~~VS~DG~~~p---------~fp~~~-~d~gqa~~ 208 (256)
T TIGR02739 144 AIQQL-SQSYGLFFFYRGK-SPISQKMAPVIQAFAKEY---GISVIPISVDGTLIP---------GLPNSR-SDSGQAQH 208 (256)
T ss_pred HHHHH-HhceeEEEEECCC-CchhHHHHHHHHHHHHHh---CCeEEEEecCCCCCC---------CCCCcc-CChHHHHh
Confidence 45555 5568888888665 999999999999987765 799999999832100 121111 24567788
Q ss_pred cCCCCCCCCCCCCCCccceeEEEECCCC
Q 044272 103 LNMVDPDEKDSSGKQLPSRALHIVGPDH 130 (133)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~p~~~lid~~G 130 (133)
+|+ ..+|++|||+++.
T Consensus 209 l~v------------~~~Pal~Lv~~~t 224 (256)
T TIGR02739 209 LGV------------KYFPALYLVNPKS 224 (256)
T ss_pred cCC------------ccCceEEEEECCC
Confidence 899 4799999999984
No 106
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.66 E-value=1.5e-07 Score=56.36 Aligned_cols=65 Identities=14% Similarity=0.245 Sum_probs=46.3
Q ss_pred CeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCCCceeeCCcHHHHHHcCCCCCCC
Q 044272 31 NWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPIIADPNREIIKQLNMVDPDE 110 (133)
Q Consensus 31 ~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 110 (133)
+.++|+|| ++||+.|+...+.+.++.+++.+ .+.++.|..+. +..+.+.|++
T Consensus 15 ~~vvi~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~---------------------~~~~~~~~~v----- 66 (101)
T TIGR01068 15 KPVLVDFW-APWCGPCKMIAPILEELAKEYEG-KVKFVKLNVDE---------------------NPDIAAKYGI----- 66 (101)
T ss_pred CcEEEEEE-CCCCHHHHHhCHHHHHHHHHhcC-CeEEEEEECCC---------------------CHHHHHHcCC-----
Confidence 45666665 89999999999999998877753 47777776542 2345566777
Q ss_pred CCCCCCCccceeEEEECCCCc
Q 044272 111 KDSSGKQLPSRALHIVGPDHQ 131 (133)
Q Consensus 111 ~~~~~~~~~~p~~~lid~~G~ 131 (133)
...|+++++ ++|+
T Consensus 67 -------~~~P~~~~~-~~g~ 79 (101)
T TIGR01068 67 -------RSIPTLLLF-KNGK 79 (101)
T ss_pred -------CcCCEEEEE-eCCc
Confidence 357777777 4554
No 107
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=98.64 E-value=1.6e-07 Score=64.68 Aligned_cols=113 Identities=22% Similarity=0.334 Sum_probs=79.7
Q ss_pred CCCCCCCCceEEecCCC-e-eeccccc-CCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeC------C-
Q 044272 4 LTIGDSVPNLQVQTNQG-N-FKLHDFI-GDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSC------D- 73 (133)
Q Consensus 4 l~~G~~~p~f~l~~~~G-~-~~l~d~~-~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~------d- 73 (133)
..+|..+||..+.+.+| + .++.|+. +++++||.|-+.+ ||.=+..+..++++.++|.+. +.++.|-. |
T Consensus 73 a~~G~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~T-CPpF~~~l~~f~~l~~~f~d~-adFl~VYI~EAHpsDg 150 (237)
T PF00837_consen 73 AKLGGPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCT-CPPFMAKLDAFKRLVEDFSDV-ADFLIVYIEEAHPSDG 150 (237)
T ss_pred eeCCCCCCCCceEeeCCCcceeHHHhccCCCCeEEEccccc-chHHHHHHHHHHHHHHHhhhh-hheehhhHhhhCcCCC
Confidence 46899999999999999 6 8999985 5679999998777 999999999999999999864 44444421 1
Q ss_pred --------------C-HHHH--HHHHHhcCCCCceeeC-CcHHHHHHcCCCCCCCCCCCCCCccceeEEEECCCCcc
Q 044272 74 --------------D-VKSH--NEWIKDIEAYTPIIAD-PNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQV 132 (133)
Q Consensus 74 --------------~-~~~~--~~~~~~~~~~~~~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i 132 (133)
+ .+.+ .+...+.....|++.| -++...+.||.+ +. ..||| .||||
T Consensus 151 W~~~~~~~~i~qh~sledR~~aA~~l~~~~~~~pi~vD~mdN~~~~~YgA~------------Pe-RlyIi-~~gkv 213 (237)
T PF00837_consen 151 WAFGNNPYEIPQHRSLEDRLRAAKLLKEEFPQCPIVVDTMDNNFNKAYGAL------------PE-RLYII-QDGKV 213 (237)
T ss_pred ccCCCCceeecCCCCHHHHHHHHHHHHhhCCCCCEEEEccCCHHHHHhCCC------------cc-eEEEE-ECCEE
Confidence 1 1111 1222222233488887 567889999994 33 34555 48876
No 108
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=98.63 E-value=4.6e-07 Score=56.25 Aligned_cols=40 Identities=8% Similarity=0.077 Sum_probs=29.8
Q ss_pred CeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHc-C-ceEEEEe
Q 044272 31 NWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKR-E-VKLLGLS 71 (133)
Q Consensus 31 ~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~-~-v~vv~is 71 (133)
++++|.|| ++||+.|+...+.+.++.+++++. + +.+..|.
T Consensus 20 ~~vvV~f~-a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd 61 (114)
T cd02992 20 SAWLVEFY-ASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVD 61 (114)
T ss_pred CeEEEEEE-CCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEe
Confidence 45666655 999999999999999998888643 2 4454444
No 109
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.61 E-value=4.1e-07 Score=54.74 Aligned_cols=42 Identities=19% Similarity=0.440 Sum_probs=35.0
Q ss_pred CCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCC
Q 044272 30 DNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCD 73 (133)
Q Consensus 30 ~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d 73 (133)
+++++|.|+ +.||+.|+...+.+.++.+++.+ ++.++.|..+
T Consensus 17 ~~~vvv~f~-~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~ 58 (103)
T PF00085_consen 17 DKPVVVYFY-APWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCD 58 (103)
T ss_dssp SSEEEEEEE-STTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETT
T ss_pred CCCEEEEEe-CCCCCccccccceeccccccccc-ccccchhhhh
Confidence 466777766 88999999999999999988886 6888777765
No 110
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=98.59 E-value=3.6e-07 Score=56.46 Aligned_cols=45 Identities=13% Similarity=0.144 Sum_probs=36.4
Q ss_pred CCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCH
Q 044272 29 GDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDV 75 (133)
Q Consensus 29 ~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~ 75 (133)
+++.+||.|+ ++||+.|+..-|.|.++..++++. +.++-|..|..
T Consensus 13 ~~klVVVdF~-a~WC~pCk~mdp~l~ela~~~~~~-~~f~kVDVDev 57 (114)
T cd02986 13 AEKVLVLRFG-RDEDAVCLQLDDILSKTSHDLSKM-ASIYLVDVDKV 57 (114)
T ss_pred CCCEEEEEEe-CCCChhHHHHHHHHHHHHHHccCc-eEEEEEecccc
Confidence 4567777766 899999999999999999988643 77888888743
No 111
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=98.57 E-value=6e-07 Score=54.20 Aligned_cols=42 Identities=12% Similarity=0.090 Sum_probs=31.9
Q ss_pred CCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCC
Q 044272 30 DNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCD 73 (133)
Q Consensus 30 ~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d 73 (133)
+++++|.|| ++||+.|+...+.+.++.+++.. .+.+..+..+
T Consensus 18 ~~~vlv~f~-a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~id~~ 59 (103)
T cd03001 18 DDVWLVEFY-APWCGHCKNLAPEWKKAAKALKG-IVKVGAVDAD 59 (103)
T ss_pred CCcEEEEEE-CCCCHHHHHHhHHHHHHHHHhcC-CceEEEEECc
Confidence 344666666 89999999999999998887764 3677766654
No 112
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=98.57 E-value=2.8e-07 Score=63.62 Aligned_cols=66 Identities=8% Similarity=0.082 Sum_probs=46.2
Q ss_pred CeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCCCceeeCCcHHHHHHcCCCCCCC
Q 044272 31 NWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPIIADPNREIIKQLNMVDPDE 110 (133)
Q Consensus 31 ~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 110 (133)
++++|.|| ++||++|+...|.+.++.+++++. +.+..|..+ ....+.+.|++
T Consensus 53 ~~vlV~Fy-ApWC~~Ck~~~P~~e~la~~~~~~-v~~~~VD~~---------------------~~~~l~~~~~I----- 104 (224)
T PTZ00443 53 GPWFVKFY-APWCSHCRKMAPAWERLAKALKGQ-VNVADLDAT---------------------RALNLAKRFAI----- 104 (224)
T ss_pred CCEEEEEE-CCCChHHHHHHHHHHHHHHHcCCC-eEEEEecCc---------------------ccHHHHHHcCC-----
Confidence 56666666 999999999999999998888642 555444333 12356777777
Q ss_pred CCCCCCCccceeEEEECCCCcc
Q 044272 111 KDSSGKQLPSRALHIVGPDHQV 132 (133)
Q Consensus 111 ~~~~~~~~~~p~~~lid~~G~i 132 (133)
..+|++++++ +|++
T Consensus 105 -------~~~PTl~~f~-~G~~ 118 (224)
T PTZ00443 105 -------KGYPTLLLFD-KGKM 118 (224)
T ss_pred -------CcCCEEEEEE-CCEE
Confidence 3578888776 5553
No 113
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=98.55 E-value=4.6e-07 Score=56.06 Aligned_cols=40 Identities=10% Similarity=0.228 Sum_probs=31.3
Q ss_pred CeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCC
Q 044272 31 NWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCD 73 (133)
Q Consensus 31 ~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d 73 (133)
++++|.|| ++||+.|+...+.|.++.+++. ++.++-|..+
T Consensus 25 ~~vvv~F~-a~~c~~C~~l~~~l~~la~~~~--~v~f~~vd~~ 64 (113)
T cd02957 25 TRVVVHFY-EPGFPRCKILDSHLEELAAKYP--ETKFVKINAE 64 (113)
T ss_pred CEEEEEEe-CCCCCcHHHHHHHHHHHHHHCC--CcEEEEEEch
Confidence 56666665 9999999999999999988774 5666666554
No 114
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.54 E-value=9.8e-07 Score=54.70 Aligned_cols=41 Identities=10% Similarity=0.029 Sum_probs=30.6
Q ss_pred CeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCC
Q 044272 31 NWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCD 73 (133)
Q Consensus 31 ~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d 73 (133)
...++++|+++||+.|+...+-|.++.+.+ ..+++..|..|
T Consensus 22 ~~~vvv~f~a~wC~~C~~~~~~l~~la~~~--~~i~~~~vd~d 62 (113)
T cd02975 22 PVDLVVFSSKEGCQYCEVTKQLLEELSELS--DKLKLEIYDFD 62 (113)
T ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHHHhc--CceEEEEEeCC
Confidence 334555566999999999999999887665 24777777766
No 115
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=98.53 E-value=4.9e-07 Score=55.72 Aligned_cols=68 Identities=13% Similarity=0.164 Sum_probs=48.6
Q ss_pred CCCeEEEEEeeCCC--CchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCCCceeeCCcHHHHHHcCCC
Q 044272 29 GDNWTIIFSHPGDF--TPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPIIADPNREIIKQLNMV 106 (133)
Q Consensus 29 ~~~~~vl~f~~~~~--c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 106 (133)
.+.++||.|+ +.| ||.|....|.|.++.+++.+. +.++-|..| .+.+++..|++
T Consensus 26 ~~~~~v~~f~-~~~~~cp~c~~i~P~leela~e~~~~-v~f~kVdid---------------------~~~~la~~f~V- 81 (111)
T cd02965 26 AGGDLVLLLA-GDPVRFPEVLDVAVVLPELLKAFPGR-FRAAVVGRA---------------------DEQALAARFGV- 81 (111)
T ss_pred CCCCEEEEec-CCcccCcchhhhHhHHHHHHHHCCCc-EEEEEEECC---------------------CCHHHHHHcCC-
Confidence 4456767666 775 999999999999998888643 566666555 34466777777
Q ss_pred CCCCCCCCCCCccceeEEEECCCCcc
Q 044272 107 DPDEKDSSGKQLPSRALHIVGPDHQV 132 (133)
Q Consensus 107 ~~~~~~~~~~~~~~p~~~lid~~G~i 132 (133)
..+|+.+++ ++|++
T Consensus 82 -----------~sIPTli~f-kdGk~ 95 (111)
T cd02965 82 -----------LRTPALLFF-RDGRY 95 (111)
T ss_pred -----------CcCCEEEEE-ECCEE
Confidence 467877777 46654
No 116
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.53 E-value=3.7e-07 Score=70.96 Aligned_cols=72 Identities=11% Similarity=0.099 Sum_probs=50.3
Q ss_pred CCCeEEEEEeeCCCCchhHHHHHHH---HhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCCCceeeCCcHHHHHHcCC
Q 044272 29 GDNWTIIFSHPGDFTPVCTTELGKM---AAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPIIADPNREIIKQLNM 105 (133)
Q Consensus 29 ~~~~~vl~f~~~~~c~~C~~~~~~l---~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 105 (133)
+||+++|.|| ++||+.|+...+.. .++.++++ ++.++-+..+..+ +.+.++.++|++
T Consensus 473 ~gK~VlVdF~-A~WC~~Ck~~e~~~~~~~~v~~~l~--~~~~v~vDvt~~~-----------------~~~~~l~~~~~v 532 (571)
T PRK00293 473 KGKPVMLDLY-ADWCVACKEFEKYTFSDPQVQQALA--DTVLLQADVTANN-----------------AEDVALLKHYNV 532 (571)
T ss_pred cCCcEEEEEE-CCcCHhHHHHHHHhcCCHHHHHHhc--CCEEEEEECCCCC-----------------hhhHHHHHHcCC
Confidence 4677888877 99999999887654 34444443 5666666654321 123567788888
Q ss_pred CCCCCCCCCCCCccceeEEEECCCCcc
Q 044272 106 VDPDEKDSSGKQLPSRALHIVGPDHQV 132 (133)
Q Consensus 106 ~~~~~~~~~~~~~~~p~~~lid~~G~i 132 (133)
...|+++++|+||++
T Consensus 533 ------------~g~Pt~~~~~~~G~~ 547 (571)
T PRK00293 533 ------------LGLPTILFFDAQGQE 547 (571)
T ss_pred ------------CCCCEEEEECCCCCC
Confidence 469999999999986
No 117
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.50 E-value=9.8e-07 Score=51.50 Aligned_cols=41 Identities=12% Similarity=0.178 Sum_probs=31.9
Q ss_pred CeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCC
Q 044272 31 NWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDD 74 (133)
Q Consensus 31 ~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~ 74 (133)
++++|+|+ +.||+.|....+.+.++.+. ..++.++.|..+.
T Consensus 11 ~~~ll~~~-~~~C~~C~~~~~~~~~~~~~--~~~~~~~~i~~~~ 51 (93)
T cd02947 11 KPVVVDFW-APWCGPCKAIAPVLEELAEE--YPKVKFVKVDVDE 51 (93)
T ss_pred CcEEEEEE-CCCChhHHHhhHHHHHHHHH--CCCceEEEEECCC
Confidence 55666655 88999999999999988766 4568888887764
No 118
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.49 E-value=1.7e-06 Score=54.49 Aligned_cols=77 Identities=5% Similarity=-0.052 Sum_probs=43.1
Q ss_pred CCCeEEEEEeeCCCCchhHHHHHHH-H--hhhhHHHHcCceEEEEeCCC-HHHHHHHHHhcCCCCceeeCCcHHHHHHcC
Q 044272 29 GDNWTIIFSHPGDFTPVCTTELGKM-A--AYVPEFDKREVKLLGLSCDD-VKSHNEWIKDIEAYTPIIADPNREIIKQLN 104 (133)
Q Consensus 29 ~~~~~vl~f~~~~~c~~C~~~~~~l-~--~~~~~~~~~~v~vv~is~d~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 104 (133)
.+|+++|+| .++||+.|+..-+.. . ++.+.+. ++..+|-|..+. ++..+++.+ .....||
T Consensus 14 ~~KpVll~f-~a~WC~~Ck~me~~~f~~~~V~~~l~-~~fv~VkvD~~~~~~~~~~~~~--------------~~~~~~~ 77 (124)
T cd02955 14 EDKPIFLSI-GYSTCHWCHVMEHESFEDEEVAAILN-ENFVPIKVDREERPDVDKIYMN--------------AAQAMTG 77 (124)
T ss_pred cCCeEEEEE-ccCCCHhHHHHHHHccCCHHHHHHHh-CCEEEEEEeCCcCcHHHHHHHH--------------HHHHhcC
Confidence 567777775 499999999887643 2 2333332 245554444432 111111111 1222455
Q ss_pred CCCCCCCCCCCCCccceeEEEECCCCccC
Q 044272 105 MVDPDEKDSSGKQLPSRALHIVGPDHQVQ 133 (133)
Q Consensus 105 ~~~~~~~~~~~~~~~~p~~~lid~~G~i~ 133 (133)
+ ...|+++++|++|+++
T Consensus 78 ~------------~G~Pt~vfl~~~G~~~ 94 (124)
T cd02955 78 Q------------GGWPLNVFLTPDLKPF 94 (124)
T ss_pred C------------CCCCEEEEECCCCCEE
Confidence 5 2589999999999863
No 119
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=98.48 E-value=1.1e-06 Score=54.43 Aligned_cols=43 Identities=7% Similarity=0.026 Sum_probs=33.4
Q ss_pred CCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCC
Q 044272 29 GDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDD 74 (133)
Q Consensus 29 ~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~ 74 (133)
.+++++|.|| ++||+.|+...+.|.++.+++. +++++-|..|.
T Consensus 21 ~~~~vvV~f~-a~~c~~C~~~~p~l~~la~~~~--~i~f~~Vd~~~ 63 (113)
T cd02989 21 SSERVVCHFY-HPEFFRCKIMDKHLEILAKKHL--ETKFIKVNAEK 63 (113)
T ss_pred CCCcEEEEEE-CCCCccHHHHHHHHHHHHHHcC--CCEEEEEEccc
Confidence 3456666665 9999999999999999987764 57887777764
No 120
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=7e-07 Score=63.27 Aligned_cols=43 Identities=14% Similarity=0.275 Sum_probs=35.2
Q ss_pred CCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCC
Q 044272 29 GDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCD 73 (133)
Q Consensus 29 ~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d 73 (133)
+.++|++.|| ++||+.|+..+|.|.++.++++.+ +.+.-|+.|
T Consensus 42 ~~~PVlV~fW-ap~~~~c~qL~p~Lekla~~~~G~-f~LakvN~D 84 (304)
T COG3118 42 REVPVLVDFW-APWCGPCKQLTPTLEKLAAEYKGK-FKLAKVNCD 84 (304)
T ss_pred cCCCeEEEec-CCCCchHHHHHHHHHHHHHHhCCc-eEEEEecCC
Confidence 4468988887 999999999999999999888743 666666665
No 121
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=98.46 E-value=9.3e-07 Score=55.39 Aligned_cols=70 Identities=7% Similarity=0.071 Sum_probs=46.9
Q ss_pred CCCeEEEEEeeCCCCch--hH--HHHHHHHhhhhHH-HHcCceEEEEeCCCHHHHHHHHHhcCCCCceeeCCcHHHHHHc
Q 044272 29 GDNWTIIFSHPGDFTPV--CT--TELGKMAAYVPEF-DKREVKLLGLSCDDVKSHNEWIKDIEAYTPIIADPNREIIKQL 103 (133)
Q Consensus 29 ~~~~~vl~f~~~~~c~~--C~--~~~~~l~~~~~~~-~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 103 (133)
+.+.++|.||+++||+. |+ ...|.|.++.+++ ++.++.+.-|..| .+..++..|
T Consensus 25 ~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d---------------------~~~~La~~~ 83 (120)
T cd03065 25 KYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSK---------------------KDAKVAKKL 83 (120)
T ss_pred hCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCC---------------------CCHHHHHHc
Confidence 34457777777999976 99 6667777776665 2345777776665 345667777
Q ss_pred CCCCCCCCCCCCCCccceeEEEECCCCcc
Q 044272 104 NMVDPDEKDSSGKQLPSRALHIVGPDHQV 132 (133)
Q Consensus 104 ~~~~~~~~~~~~~~~~~p~~~lid~~G~i 132 (133)
|+ ..+|+.+++ .||++
T Consensus 84 ~I------------~~iPTl~lf-k~G~~ 99 (120)
T cd03065 84 GL------------DEEDSIYVF-KDDEV 99 (120)
T ss_pred CC------------ccccEEEEE-ECCEE
Confidence 77 357777777 36653
No 122
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=98.40 E-value=2e-06 Score=65.10 Aligned_cols=45 Identities=11% Similarity=0.192 Sum_probs=37.3
Q ss_pred CCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCC
Q 044272 29 GDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDD 74 (133)
Q Consensus 29 ~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~ 74 (133)
.+++++|.|| ++||++|+...|.+.++.++++..++.++.|..|.
T Consensus 370 ~~k~VLV~Fy-ApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~ 414 (463)
T TIGR00424 370 RKEAWLVVLY-APWCPFCQAMEASYLELAEKLAGSGVKVAKFRADG 414 (463)
T ss_pred CCCeEEEEEE-CCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCC
Confidence 4455666665 99999999999999999999987678888888874
No 123
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.38 E-value=2.2e-06 Score=49.56 Aligned_cols=38 Identities=13% Similarity=0.134 Sum_probs=29.8
Q ss_pred EEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCC
Q 044272 35 IFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCD 73 (133)
Q Consensus 35 l~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d 73 (133)
+..|+++||++|+...+.|.++.++++. .+.++-|..+
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~~vd~~ 40 (82)
T TIGR00411 3 IELFTSPTCPYCPAAKRVVEEVAKEMGD-AVEVEYINVM 40 (82)
T ss_pred EEEEECCCCcchHHHHHHHHHHHHHhcC-ceEEEEEeCc
Confidence 4445599999999999999999887753 3777777765
No 124
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=98.35 E-value=1.5e-06 Score=55.94 Aligned_cols=46 Identities=11% Similarity=0.127 Sum_probs=37.0
Q ss_pred CCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHH
Q 044272 29 GDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVK 76 (133)
Q Consensus 29 ~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~ 76 (133)
+++++||.|| ++||++|+...|.|.++.+++.+. +.++-|..|...
T Consensus 22 ~~~lVVvdF~-A~WCgpCk~m~p~l~~la~~~~~~-~~~~kVDVDe~~ 67 (142)
T PLN00410 22 EERLVVIRFG-HDWDETCMQMDEVLASVAETIKNF-AVIYLVDITEVP 67 (142)
T ss_pred CCCEEEEEEE-CCCChhHHHHHHHHHHHHHHcCCc-eEEEEEECCCCH
Confidence 4567777777 899999999999999998888643 677888887543
No 125
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.31 E-value=3.4e-06 Score=56.22 Aligned_cols=39 Identities=13% Similarity=0.199 Sum_probs=31.6
Q ss_pred eEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCC
Q 044272 32 WTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCD 73 (133)
Q Consensus 32 ~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d 73 (133)
++||.|| ++||+.|+...+.|.++.+++. .+.++-|..+
T Consensus 85 ~VVV~Fy-a~wc~~Ck~m~~~l~~LA~~~~--~vkF~kVd~d 123 (175)
T cd02987 85 TVVVHIY-EPGIPGCAALNSSLLCLAAEYP--AVKFCKIRAS 123 (175)
T ss_pred EEEEEEE-CCCCchHHHHHHHHHHHHHHCC--CeEEEEEecc
Confidence 5555555 9999999999999999988774 5788777776
No 126
>PTZ00102 disulphide isomerase; Provisional
Probab=98.30 E-value=2e-06 Score=65.24 Aligned_cols=44 Identities=5% Similarity=0.052 Sum_probs=33.2
Q ss_pred CCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHc-CceEEEEeCC
Q 044272 29 GDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKR-EVKLLGLSCD 73 (133)
Q Consensus 29 ~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~-~v~vv~is~d 73 (133)
.++.++|.|| ++||++|+...+.+.++.+.+++. .+.+..|..+
T Consensus 374 ~~k~vlv~f~-a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~ 418 (477)
T PTZ00102 374 SDKDVLLEIY-APWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGT 418 (477)
T ss_pred CCCCEEEEEE-CCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECC
Confidence 4566777776 999999999999999998887654 3555555544
No 127
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=98.26 E-value=2.5e-06 Score=51.43 Aligned_cols=43 Identities=7% Similarity=0.077 Sum_probs=33.1
Q ss_pred CCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHH-cCceEEEEeCC
Q 044272 30 DNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDK-REVKLLGLSCD 73 (133)
Q Consensus 30 ~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~-~~v~vv~is~d 73 (133)
++.++|.|| ++||+.|+...+.+.++.+.+++ ..+.+..|..+
T Consensus 18 ~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~ 61 (104)
T cd02995 18 DKDVLVEFY-APWCGHCKALAPIYEELAEKLKGDDNVVIAKMDAT 61 (104)
T ss_pred CCcEEEEEE-CCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCc
Confidence 455666655 99999999999999999988875 34666666665
No 128
>PTZ00102 disulphide isomerase; Provisional
Probab=98.26 E-value=4.6e-06 Score=63.34 Aligned_cols=43 Identities=5% Similarity=0.101 Sum_probs=30.5
Q ss_pred CCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcC--ceEEEEeC
Q 044272 29 GDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKRE--VKLLGLSC 72 (133)
Q Consensus 29 ~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~--v~vv~is~ 72 (133)
+++.++|.| +++||++|+...|.+.++...+++.+ +.+..|..
T Consensus 48 ~~~~~lv~f-~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~ 92 (477)
T PTZ00102 48 ENEIVLVKF-YAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDA 92 (477)
T ss_pred cCCcEEEEE-ECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEEC
Confidence 345555555 59999999999999999888776554 44444443
No 129
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.25 E-value=7.6e-06 Score=43.92 Aligned_cols=43 Identities=14% Similarity=0.192 Sum_probs=33.4
Q ss_pred EeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHH
Q 044272 37 SHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEW 81 (133)
Q Consensus 37 f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~ 81 (133)
+|+..||+.|....+.+.++ +..+.++.++.++.+......++
T Consensus 3 ~~~~~~c~~c~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 45 (69)
T cd01659 3 LFYAPWCPFCQALRPVLAEL--ALLNKGVKFEAVDVDEDPALEKE 45 (69)
T ss_pred EEECCCChhHHhhhhHHHHH--HhhCCCcEEEEEEcCCChHHhhH
Confidence 34488899999999999987 45556899999998865555444
No 130
>KOG4498 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.25 E-value=3e-06 Score=56.27 Aligned_cols=116 Identities=16% Similarity=0.251 Sum_probs=86.0
Q ss_pred cCCC-eeecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCCCceeeCC
Q 044272 17 TNQG-NFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPIIADP 95 (133)
Q Consensus 17 ~~~G-~~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~d~ 95 (133)
+..| ++..+++.+.+..++.|.+-..|-.|+.+...|.++.+-+++.|+.+++|...+......+.........++.|+
T Consensus 36 ~~rg~~vp~~~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~~Gv~Li~vg~g~~~~~~~f~~q~~f~gevylD~ 115 (197)
T KOG4498|consen 36 DSRGESVPVTSLFKERSAVVAFVRRPGCVLCREEAADLASLKDLLDELGVVLIAVGPGSHVQFEDFWDQTYFSGEVYLDP 115 (197)
T ss_pred hhcCceeehHHhhhcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHHhCCEEEEEeccceeecchhhcccCcceeEEEcC
Confidence 4467 799999877788999999888999999999999999888889999999999866666666666655545888888
Q ss_pred cHHHHHHcCCCCCC--------------------CCCCCCCCccceeEEEECCCCcc
Q 044272 96 NREIIKQLNMVDPD--------------------EKDSSGKQLPSRALHIVGPDHQV 132 (133)
Q Consensus 96 ~~~~~~~~~~~~~~--------------------~~~~~~~~~~~p~~~lid~~G~i 132 (133)
+..++..++..... +++..|........++|.++++|
T Consensus 116 ~~~~Y~~le~k~~~~g~l~~g~~~~~~Ka~~~gv~gn~~gd~~~~gG~~~V~~G~~i 172 (197)
T KOG4498|consen 116 HRGFYKPLEFKRAEMGFLRPGTDAAAVKAKAVGVEGNLEGDGLLSGGVLVVGRGKKI 172 (197)
T ss_pred ccceechhhhhcccccccccccHHHHHHHhhcccCCCcccChHHhCCeEEEecCCeE
Confidence 87776666554421 11233443456677777777665
No 131
>PTZ00062 glutaredoxin; Provisional
Probab=98.16 E-value=6.8e-06 Score=56.02 Aligned_cols=39 Identities=10% Similarity=0.176 Sum_probs=31.6
Q ss_pred EEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCC
Q 044272 33 TIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCD 73 (133)
Q Consensus 33 ~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d 73 (133)
.+|+||+++||+.|+.+.+.|.++.+++. .++++-|..|
T Consensus 19 ~~vl~f~a~w~~~C~~m~~vl~~l~~~~~--~~~F~~V~~d 57 (204)
T PTZ00062 19 KLVLYVKSSKEPEYEQLMDVCNALVEDFP--SLEFYVVNLA 57 (204)
T ss_pred cEEEEEeCCCCcchHHHHHHHHHHHHHCC--CcEEEEEccc
Confidence 34555569999999999999999988885 5888888765
No 132
>PLN02309 5'-adenylylsulfate reductase
Probab=98.16 E-value=1.4e-05 Score=60.59 Aligned_cols=44 Identities=11% Similarity=0.194 Sum_probs=36.6
Q ss_pred CCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCC
Q 044272 29 GDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCD 73 (133)
Q Consensus 29 ~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d 73 (133)
.+++++|.|| ++||++|+.+.+.+.++.+++...++.+..|..|
T Consensus 364 ~~k~vlV~Fy-ApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d 407 (457)
T PLN02309 364 RKEPWLVVLY-APWCPFCQAMEASYEELAEKLAGSGVKVAKFRAD 407 (457)
T ss_pred CCCeEEEEEE-CCCChHHHHHHHHHHHHHHHhccCCeEEEEEECC
Confidence 4555666655 9999999999999999999988777888888877
No 133
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.15 E-value=1.7e-05 Score=50.26 Aligned_cols=26 Identities=12% Similarity=0.088 Sum_probs=20.5
Q ss_pred CCCeEEEEEeeCCCCchhHHHHHHHHh
Q 044272 29 GDNWTIIFSHPGDFTPVCTTELGKMAA 55 (133)
Q Consensus 29 ~~~~~vl~f~~~~~c~~C~~~~~~l~~ 55 (133)
.+|+++|+|+ +.||+.|+..-..+-+
T Consensus 22 ~~Kpvmv~f~-sdwC~~Ck~l~k~~f~ 47 (130)
T cd02960 22 SNKPLMVIHH-LEDCPHSQALKKAFAE 47 (130)
T ss_pred CCCeEEEEEe-CCcCHhHHHHHHHhhC
Confidence 5677777755 9999999999887643
No 134
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=98.13 E-value=2.9e-05 Score=54.57 Aligned_cols=114 Identities=12% Similarity=0.173 Sum_probs=72.8
Q ss_pred CCCCceEEecCCC-eeecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHH-Hc--CceEEEEeCCCHHH---HHH
Q 044272 8 DSVPNLQVQTNQG-NFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFD-KR--EVKLLGLSCDDVKS---HNE 80 (133)
Q Consensus 8 ~~~p~f~l~~~~G-~~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~-~~--~v~vv~is~d~~~~---~~~ 80 (133)
-.+|+|...+.+| .+++.+...|+..+|..++..|-..|....-. ...+++. .. .++++-|+...... +..
T Consensus 99 lyFP~l~g~tL~g~~~~~~~~l~gkvSlV~l~s~~~ge~~~~sw~~--p~~~~~~~~~~~~~q~v~In~~e~~~k~~l~~ 176 (252)
T PF05176_consen 99 LYFPNLQGKTLAGNKVDTTDLLRGKVSLVCLFSSAWGEEMVDSWTS--PFLEDFLQEPYGRVQIVEINLIENWLKSWLVK 176 (252)
T ss_pred CcCCCCccccCCCCCcccccccCCceEEEEEeehHHHHHHHHHHhh--HHHHHHhhCCCCceEEEEEecchHHHHHHHHH
Confidence 3579999999999 78888877888777766656665555554433 2333343 33 69999999853221 111
Q ss_pred HH-HhcCC--C-----CceeeC-C--cHHHHHHcCCCCCCCCCCCCCCccceeEEEECCCCccC
Q 044272 81 WI-KDIEA--Y-----TPIIAD-P--NREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVQ 133 (133)
Q Consensus 81 ~~-~~~~~--~-----~~~~~d-~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~ 133 (133)
+. ..... + .-++.+ . ...+.+.+|+.+ ..+..+||||++|+||
T Consensus 177 ~~~~~lrk~ip~~~h~~Yf~~~~~~~~~~iRe~Lgi~N----------~~~GYvyLVD~~grIR 230 (252)
T PF05176_consen 177 LFMGSLRKSIPEERHDRYFIVYRGQLSDDIREALGINN----------SYVGYVYLVDPNGRIR 230 (252)
T ss_pred HHhhhhhccCCHHHCceEEEEeCCcccHHHHHHhCCCC----------CCcCeEEEECCCCeEE
Confidence 11 11111 1 122333 2 568889999965 3688999999999996
No 135
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.11 E-value=1.4e-05 Score=60.15 Aligned_cols=44 Identities=11% Similarity=0.214 Sum_probs=33.0
Q ss_pred CCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcC--ceEEEEeCC
Q 044272 29 GDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKRE--VKLLGLSCD 73 (133)
Q Consensus 29 ~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~--v~vv~is~d 73 (133)
.++.++|.| +++||++|+...+.+.++.+.+++.+ +.++.|..+
T Consensus 17 ~~~~~~v~f-~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~ 62 (462)
T TIGR01130 17 SHEFVLVEF-YAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDAT 62 (462)
T ss_pred cCCCEEEEE-ECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECC
Confidence 344555555 59999999999999999888887665 666666554
No 136
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.11 E-value=2.5e-05 Score=44.90 Aligned_cols=38 Identities=16% Similarity=0.091 Sum_probs=27.2
Q ss_pred EEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHH
Q 044272 35 IFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVK 76 (133)
Q Consensus 35 l~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~ 76 (133)
+.|| ++|||.|....+.+.++.+++. +.+-.+..|+.+
T Consensus 3 i~~~-a~~C~~C~~~~~~~~~~~~e~~---~~~~~~~v~~~~ 40 (76)
T TIGR00412 3 IQIY-GTGCANCQMTEKNVKKAVEELG---IDAEFEKVTDMN 40 (76)
T ss_pred EEEE-CCCCcCHHHHHHHHHHHHHHcC---CCeEEEEeCCHH
Confidence 5565 7999999999999999887764 334445555333
No 137
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.03 E-value=2.3e-05 Score=53.05 Aligned_cols=40 Identities=15% Similarity=0.399 Sum_probs=32.3
Q ss_pred CeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCC
Q 044272 31 NWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCD 73 (133)
Q Consensus 31 ~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d 73 (133)
.++||.|| ++||+.|+...+.|.++.+++. .++++-|..+
T Consensus 103 ~~VVV~Fy-a~wc~~C~~m~~~l~~LA~k~~--~vkFvkI~ad 142 (192)
T cd02988 103 TWVVVHLY-KDGIPLCRLLNQHLSELARKFP--DTKFVKIIST 142 (192)
T ss_pred CEEEEEEE-CCCCchHHHHHHHHHHHHHHCC--CCEEEEEEhH
Confidence 35666655 9999999999999999988875 5888777765
No 138
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=97.92 E-value=4.6e-05 Score=52.35 Aligned_cols=43 Identities=12% Similarity=0.035 Sum_probs=31.1
Q ss_pred CCCeEEEEEee--CCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCC
Q 044272 29 GDNWTIIFSHP--GDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCD 73 (133)
Q Consensus 29 ~~~~~vl~f~~--~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d 73 (133)
++...++.|+. ++||++|+...+-+.++.+++. ++++..+..|
T Consensus 18 ~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~--~~~i~~v~vd 62 (215)
T TIGR02187 18 KNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSP--KLKLEIYDFD 62 (215)
T ss_pred CCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCC--CceEEEEecC
Confidence 44455556664 3999999999999999888774 4565556655
No 139
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=97.90 E-value=9.4e-05 Score=45.70 Aligned_cols=71 Identities=7% Similarity=0.139 Sum_probs=41.2
Q ss_pred CCCeEEEEEeeCCCCchhHHHHHHHHh---hhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCCCceeeCCcHHHHHHcCC
Q 044272 29 GDNWTIIFSHPGDFTPVCTTELGKMAA---YVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPIIADPNREIIKQLNM 105 (133)
Q Consensus 29 ~~~~~vl~f~~~~~c~~C~~~~~~l~~---~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 105 (133)
.+|+++|+|. +.||+.|.......-. +.+.+++ ....+.+..++++ ...+.+.|++
T Consensus 16 ~~K~llv~~~-~~~c~~c~~~~~~vl~~~~v~~~l~~-~~v~~~~d~~~~e-------------------~~~~~~~~~~ 74 (114)
T cd02958 16 EKKWLLVYLQ-SEDEFDSQVLNRDLWSNESVKEFIRE-NFIFWQCDIDSSE-------------------GQRFLQSYKV 74 (114)
T ss_pred hCceEEEEEe-cCCcchHHHHHHHHcCCHHHHHHHHh-CEEEEEecCCCcc-------------------HHHHHHHhCc
Confidence 4566666655 9999999988765422 2222222 2333333333211 2245666666
Q ss_pred CCCCCCCCCCCCccceeEEEECC-CCcc
Q 044272 106 VDPDEKDSSGKQLPSRALHIVGP-DHQV 132 (133)
Q Consensus 106 ~~~~~~~~~~~~~~~p~~~lid~-~G~i 132 (133)
...|+++++|+ +|++
T Consensus 75 ------------~~~P~~~~i~~~~g~~ 90 (114)
T cd02958 75 ------------DKYPHIAIIDPRTGEV 90 (114)
T ss_pred ------------cCCCeEEEEeCccCcE
Confidence 36899999999 7875
No 140
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=97.87 E-value=9.4e-05 Score=43.89 Aligned_cols=45 Identities=2% Similarity=-0.145 Sum_probs=32.1
Q ss_pred ccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCC
Q 044272 25 HDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCD 73 (133)
Q Consensus 25 ~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d 73 (133)
.++ + +++-+.+|.+.||+.|+...+-+.++.+.+. ++.+..+..+
T Consensus 8 ~~l-~-~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~--~i~~~~vd~~ 52 (89)
T cd03026 8 RRL-N-GPINFETYVSLSCHNCPDVVQALNLMAVLNP--NIEHEMIDGA 52 (89)
T ss_pred Hhc-C-CCEEEEEEECCCCCCcHHHHHHHHHHHHHCC--CceEEEEEhH
Confidence 345 4 4566766779999999999888888766543 4776666654
No 141
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.85 E-value=9.6e-05 Score=44.35 Aligned_cols=43 Identities=14% Similarity=0.318 Sum_probs=36.2
Q ss_pred CCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCC
Q 044272 29 GDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCD 73 (133)
Q Consensus 29 ~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d 73 (133)
+++.+++.|| +.||+.|+..++.+.++.+++.. .+.++.+...
T Consensus 31 ~~~~~~v~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~i~~~ 73 (127)
T COG0526 31 KGKPVLVDFW-APWCPPCRAEAPLLEELAEEYGG-DVEVVAVNVD 73 (127)
T ss_pred CCceEEEEEE-cCcCHHHHhhchhHHHHHHHhcC-CcEEEEEECC
Confidence 3667778877 99999999999999999888875 5788888874
No 142
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=97.82 E-value=0.00027 Score=41.04 Aligned_cols=49 Identities=12% Similarity=0.223 Sum_probs=33.5
Q ss_pred CCCeEEEEEeeCCCCchhHHHHHHHHh---hhhHHHHcCceEEEEeCCCHHHHH
Q 044272 29 GDNWTIIFSHPGDFTPVCTTELGKMAA---YVPEFDKREVKLLGLSCDDVKSHN 79 (133)
Q Consensus 29 ~~~~~vl~f~~~~~c~~C~~~~~~l~~---~~~~~~~~~v~vv~is~d~~~~~~ 79 (133)
.+|+++|+|. +.||+.|+..-..+-. +.+.+. +++..+-|..++.+...
T Consensus 16 ~~kpvlv~f~-a~wC~~C~~l~~~~~~~~~v~~~~~-~~fv~v~vd~~~~~~~~ 67 (82)
T PF13899_consen 16 EGKPVLVDFG-ADWCPPCKKLEREVFSDPEVQEALN-KNFVLVKVDVDDEDPNA 67 (82)
T ss_dssp HTSEEEEEEE-TTTTHHHHHHHHHTTTSHHHHHHHH-HCSEEEEEETTTHHHHH
T ss_pred cCCCEEEEEE-CCCCHhHHHHHHHHcCCHHHHHHHH-CCEEEEEEEcCCCChhH
Confidence 5678888875 9999999999888733 222233 45777777776555443
No 143
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=97.70 E-value=0.00079 Score=43.86 Aligned_cols=116 Identities=16% Similarity=0.215 Sum_probs=70.2
Q ss_pred CCCCCCCCceEEecC-----CC-e-----eecccccCCCeEEEEEeeCCCCchhHHHHHHHHh-hhhH-HHHcCceEEEE
Q 044272 4 LTIGDSVPNLQVQTN-----QG-N-----FKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAA-YVPE-FDKREVKLLGL 70 (133)
Q Consensus 4 l~~G~~~p~f~l~~~-----~G-~-----~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~-~~~~-~~~~~v~vv~i 70 (133)
+..|+++|..++.+. +| . .+.+.+ .||.-++....+. +-.+.....|.+ +.++ |.....+..+|
T Consensus 1 ~~~~~~~p~V~v~d~Gel~l~~~~~~y~~W~s~~l-~GKVrviq~iAGr--~sake~N~~l~~aik~a~f~~d~yqtttI 77 (160)
T PF09695_consen 1 ITLGQPVPPVTVADKGELILNGDKISYQPWNSAQL-PGKVRVIQHIAGR--SSAKEMNAPLIEAIKAAKFPHDKYQTTTI 77 (160)
T ss_pred CcCCCcCCceEecCCceEEEcCCcccccccCcccc-CCCEEEEEEeccC--CchhHhhHHHHHHHHHcCCCccceeEEEE
Confidence 468999999998753 23 3 344555 7776666666454 223333333333 2222 44334554444
Q ss_pred -eCC-----CHHHHHHHHHhcCCC--C-ceeeCCcHHHHHHcCCCCCCCCCCCCCCccceeEEEECCCCccC
Q 044272 71 -SCD-----DVKSHNEWIKDIEAY--T-PIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVQ 133 (133)
Q Consensus 71 -s~d-----~~~~~~~~~~~~~~~--~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~ 133 (133)
+.| +..-++..++..... . .++.|.++.+.+.|++.. ..-+++++|++|+|+
T Consensus 78 iN~dDAi~gt~~fVrss~e~~kk~~p~s~~vlD~~G~~~~aW~L~~-----------~~SaiiVlDK~G~V~ 138 (160)
T PF09695_consen 78 INLDDAIWGTGGFVRSSAEDSKKEFPWSQFVLDSNGVVRKAWQLQE-----------ESSAIIVLDKQGKVQ 138 (160)
T ss_pred EecccccccchHHHHHHHHHhhhhCCCcEEEEcCCCceeccccCCC-----------CCceEEEEcCCccEE
Confidence 343 233444455544433 3 689999999999999953 244789999999984
No 144
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=97.70 E-value=0.00012 Score=55.21 Aligned_cols=44 Identities=5% Similarity=0.080 Sum_probs=34.5
Q ss_pred CCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHc--CceEEEEeCC
Q 044272 29 GDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKR--EVKLLGLSCD 73 (133)
Q Consensus 29 ~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~--~v~vv~is~d 73 (133)
.++.++|.|| ++||+.|+...+.+.++.+.++.. ++.+..|..+
T Consensus 363 ~~~~vlv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~ 408 (462)
T TIGR01130 363 ETKDVLVEFY-APWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDAT 408 (462)
T ss_pred CCCeEEEEEE-CCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECC
Confidence 3455666655 999999999999999999998862 5777777665
No 145
>smart00594 UAS UAS domain.
Probab=97.54 E-value=0.00095 Score=41.79 Aligned_cols=69 Identities=9% Similarity=0.104 Sum_probs=42.1
Q ss_pred CCCeEEEEEeeCCCCchhHHHHHHHHh---hhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCCCceeeCCcHHHHHHcCC
Q 044272 29 GDNWTIIFSHPGDFTPVCTTELGKMAA---YVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPIIADPNREIIKQLNM 105 (133)
Q Consensus 29 ~~~~~vl~f~~~~~c~~C~~~~~~l~~---~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 105 (133)
.+|.++|+|+ +.||+.|......+-. +.+.+ +++..++.+..++.+ ...+++.|++
T Consensus 26 ~~K~~lv~~~-~~~c~~c~~~~r~vl~~~~V~~~i-~~~fv~~~~dv~~~e-------------------g~~l~~~~~~ 84 (122)
T smart00594 26 QRRLLWLYLH-SQDSPDSQVFNRDVLCNEAVKSLI-RENFIFWQVDVDTSE-------------------GQRVSQFYKL 84 (122)
T ss_pred hcCCEEEEEe-CCCCchHHHHHHHHccCHHHHHHH-HcCEEEEEecCCChh-------------------HHHHHHhcCc
Confidence 4455655555 8999999998877532 22233 233444444444433 1356666777
Q ss_pred CCCCCCCCCCCCccceeEEEECCCC
Q 044272 106 VDPDEKDSSGKQLPSRALHIVGPDH 130 (133)
Q Consensus 106 ~~~~~~~~~~~~~~~p~~~lid~~G 130 (133)
...|.+.++|++|
T Consensus 85 ------------~~~P~~~~l~~~~ 97 (122)
T smart00594 85 ------------DSFPYVAIVDPRT 97 (122)
T ss_pred ------------CCCCEEEEEecCC
Confidence 3578888888886
No 146
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=97.53 E-value=0.00086 Score=46.34 Aligned_cols=106 Identities=9% Similarity=0.156 Sum_probs=67.7
Q ss_pred CCCceEEecCCCeeecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcC---ceEEEEeCCCHH-HHH--HHH
Q 044272 9 SVPNLQVQTNQGNFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKRE---VKLLGLSCDDVK-SHN--EWI 82 (133)
Q Consensus 9 ~~p~f~l~~~~G~~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~---v~vv~is~d~~~-~~~--~~~ 82 (133)
+.|.+++- |.-...+. .|+.+||-+.-+ .|..|..++..|..+..++.+.| |.++.|+.-... ... +..
T Consensus 9 ~~p~W~i~---~~~pm~~~-~G~VtvVALL~a-sc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~~s~~~~~~l~ 83 (238)
T PF04592_consen 9 PPPPWKIG---GQDPMLNS-LGHVTVVALLQA-SCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGEHSRLKYWELK 83 (238)
T ss_pred CCCCceEC---CchHhhhc-CCcEEeeeehhh-hhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCcchhHHHHHHH
Confidence 44555543 34455555 678888887756 59999999999999999998776 568888864322 222 222
Q ss_pred HhcCCCCceee-C-CcHHHHHHcCCCCCCCCCCCCCCccceeEEEECCCCcc
Q 044272 83 KDIEAYTPIIA-D-PNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQV 132 (133)
Q Consensus 83 ~~~~~~~~~~~-d-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i 132 (133)
.+....+|++. | ....+=..++.. -=.+||+|+-|++
T Consensus 84 ~r~~~~ipVyqq~~~q~dvW~~L~G~-------------kdD~~iyDRCGrL 122 (238)
T PF04592_consen 84 RRVSEHIPVYQQDENQPDVWELLNGS-------------KDDFLIYDRCGRL 122 (238)
T ss_pred HhCCCCCceecCCccccCHHHHhCCC-------------cCcEEEEeccCcE
Confidence 33333358875 3 333444444442 2257889999886
No 147
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=97.50 E-value=0.00026 Score=39.28 Aligned_cols=36 Identities=6% Similarity=0.003 Sum_probs=25.4
Q ss_pred EEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCC
Q 044272 36 FSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCD 73 (133)
Q Consensus 36 ~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d 73 (133)
..|+++|||.|....+.|.++.+.. .++.+.-+..+
T Consensus 4 ~~f~~~~C~~C~~~~~~l~~l~~~~--~~i~~~~id~~ 39 (67)
T cd02973 4 EVFVSPTCPYCPDAVQAANRIAALN--PNISAEMIDAA 39 (67)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHhC--CceEEEEEEcc
Confidence 3445899999999999888875432 24776666554
No 148
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=97.47 E-value=0.00098 Score=45.77 Aligned_cols=41 Identities=7% Similarity=-0.053 Sum_probs=25.7
Q ss_pred CeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCC
Q 044272 31 NWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCD 73 (133)
Q Consensus 31 ~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d 73 (133)
+++++..|+++||++|+...+.+.++..+. ..+.+.-|..+
T Consensus 133 ~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~--~~i~~~~vD~~ 173 (215)
T TIGR02187 133 EPVRIEVFVTPTCPYCPYAVLMAHKFALAN--DKILGEMIEAN 173 (215)
T ss_pred CCcEEEEEECCCCCCcHHHHHHHHHHHHhc--CceEEEEEeCC
Confidence 456666566999999998877666654432 23554444443
No 149
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=97.46 E-value=0.00035 Score=41.96 Aligned_cols=54 Identities=6% Similarity=0.062 Sum_probs=38.7
Q ss_pred CCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCC
Q 044272 30 DNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAY 88 (133)
Q Consensus 30 ~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~ 88 (133)
++++++.|+ +.||+.|....+.+.++.++++.+ +.++.|..|.. .+.++.++..
T Consensus 12 ~~~~~~~f~-~~~~~~~~~~~~~~~~vA~~~~~~-v~f~~vd~~~~---~~~~~~~~i~ 65 (103)
T cd02982 12 GKPLLVLFY-NKDDSESEELRERFKEVAKKFKGK-LLFVVVDADDF---GRHLEYFGLK 65 (103)
T ss_pred CCCEEEEEE-cCChhhHHHHHHHHHHHHHHhCCe-EEEEEEchHhh---HHHHHHcCCC
Confidence 456666665 889999999999999999999844 77777776542 2344445543
No 150
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.37 E-value=0.00034 Score=44.38 Aligned_cols=42 Identities=10% Similarity=0.168 Sum_probs=26.2
Q ss_pred CCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCC
Q 044272 29 GDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCD 73 (133)
Q Consensus 29 ~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d 73 (133)
.++..+|+| ..+|||-|...+|.|.++.+... ++.+-.++.|
T Consensus 40 ~~~~~ilvi-~e~WCgD~~~~vP~l~kiae~~p--~i~~~~i~rd 81 (129)
T PF14595_consen 40 QKPYNILVI-TETWCGDCARNVPVLAKIAEANP--NIEVRIILRD 81 (129)
T ss_dssp -S-EEEEEE---TT-HHHHHHHHHHHHHHHH-T--TEEEEEE-HH
T ss_pred CCCcEEEEE-ECCCchhHHHHHHHHHHHHHhCC--CCeEEEEEec
Confidence 334455554 49999999999999999887643 5666556665
No 151
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.00052 Score=52.38 Aligned_cols=60 Identities=7% Similarity=0.062 Sum_probs=40.6
Q ss_pred CCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCCC
Q 044272 29 GDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYT 89 (133)
Q Consensus 29 ~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~ 89 (133)
.++.++|+-|++.||.+|++..|++.+....+++.+=.+...-+|..+. .+.+.+++...
T Consensus 40 ~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~-~~~~~~y~v~g 99 (493)
T KOG0190|consen 40 NGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE-SDLASKYEVRG 99 (493)
T ss_pred ccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh-hhhHhhhcCCC
Confidence 4555555555599999999999999999999887633333333453333 56666666554
No 152
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=97.15 E-value=0.0043 Score=34.42 Aligned_cols=52 Identities=12% Similarity=0.236 Sum_probs=34.1
Q ss_pred EEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCC-HHHHHHHHHhcCCCC-ceeeC
Q 044272 36 FSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDD-VKSHNEWIKDIEAYT-PIIAD 94 (133)
Q Consensus 36 ~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~-~~~~~~~~~~~~~~~-~~~~d 94 (133)
.+|.++||+.|+...+.|.+ .++.+..+..+. +....++.+.++... |.+..
T Consensus 3 ~lf~~~~C~~C~~~~~~l~~-------~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~ 56 (74)
T TIGR02196 3 KVYTTPWCPPCKKAKEYLTS-------KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVI 56 (74)
T ss_pred EEEcCCCChhHHHHHHHHHH-------CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEE
Confidence 45569999999998776654 468877777764 344455666666544 54443
No 153
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.00059 Score=47.61 Aligned_cols=60 Identities=8% Similarity=0.083 Sum_probs=40.4
Q ss_pred eecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCC
Q 044272 22 FKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAY 88 (133)
Q Consensus 22 ~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~ 88 (133)
-.|+.- ++|.++|.|+ ++||..|++..|-+..+..+|. +..++-|.+| .-+.-+..+|.+
T Consensus 14 ~~ls~a-g~k~v~Vdft-a~wCGPCk~IaP~Fs~lankYp--~aVFlkVdVd---~c~~taa~~gV~ 73 (288)
T KOG0908|consen 14 RELSAA-GGKLVVVDFT-ASWCGPCKRIAPIFSDLANKYP--GAVFLKVDVD---ECRGTAATNGVN 73 (288)
T ss_pred Hhhhcc-CceEEEEEEE-ecccchHHhhhhHHHHhhhhCc--ccEEEEEeHH---HhhchhhhcCcc
Confidence 344443 6677777876 9999999999999999988884 4555555443 333344444444
No 154
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=96.97 E-value=0.005 Score=38.49 Aligned_cols=46 Identities=9% Similarity=0.134 Sum_probs=31.6
Q ss_pred CCCeEEEEEeeC------CCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCH
Q 044272 29 GDNWTIIFSHPG------DFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDV 75 (133)
Q Consensus 29 ~~~~~vl~f~~~------~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~ 75 (133)
.++++.|+|+.+ +|||.|....|.+.+...... .+..+|-+...+.
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~-~~~~lv~v~VG~r 69 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAP-ENARLVYVEVGDR 69 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-S-TTEEEEEEE---H
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCC-CCceEEEEEcCCH
Confidence 456788888744 699999999999998777633 3677777777533
No 155
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=96.94 E-value=0.0051 Score=34.68 Aligned_cols=39 Identities=3% Similarity=0.073 Sum_probs=24.8
Q ss_pred EeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHH
Q 044272 37 SHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWI 82 (133)
Q Consensus 37 f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~ 82 (133)
.|+++||+.|+...+.|.++ ++..-.|..+......++.
T Consensus 4 ly~~~~C~~C~~~~~~L~~~-------~~~~~~idi~~~~~~~~~~ 42 (77)
T TIGR02200 4 VYGTTWCGYCAQLMRTLDKL-------GAAYEWVDIEEDEGAADRV 42 (77)
T ss_pred EEECCCChhHHHHHHHHHHc-------CCceEEEeCcCCHhHHHHH
Confidence 44589999999988877654 4554456665433333333
No 156
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=96.93 E-value=0.0028 Score=39.54 Aligned_cols=89 Identities=18% Similarity=0.306 Sum_probs=61.1
Q ss_pred cccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCCCceeeCCcHHHHHHc
Q 044272 24 LHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPIIADPNREIIKQL 103 (133)
Q Consensus 24 l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 103 (133)
|+++...+.++|+|-+..--+.=..++..|.+....+.++.+.++.+.-+...... .++-......+.+.|
T Consensus 3 L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~---------~~~~~~~~~~lr~~l 73 (118)
T PF13778_consen 3 LDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPG---------KPLSPEDIQALRKRL 73 (118)
T ss_pred hhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCcccccc---------CcCCHHHHHHHHHHh
Confidence 56664445788888766666777788888888888899999998888655333221 122222345788888
Q ss_pred CCCCCCCCCCCCCCccceeEEEECCCCcc
Q 044272 104 NMVDPDEKDSSGKQLPSRALHIVGPDHQV 132 (133)
Q Consensus 104 ~~~~~~~~~~~~~~~~~p~~~lid~~G~i 132 (133)
++.. ..-+.+||++||.+
T Consensus 74 ~~~~-----------~~f~~vLiGKDG~v 91 (118)
T PF13778_consen 74 RIPP-----------GGFTVVLIGKDGGV 91 (118)
T ss_pred CCCC-----------CceEEEEEeCCCcE
Confidence 8842 34688999999976
No 157
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.0011 Score=50.65 Aligned_cols=34 Identities=3% Similarity=0.023 Sum_probs=28.6
Q ss_pred CCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHc
Q 044272 29 GDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKR 63 (133)
Q Consensus 29 ~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~ 63 (133)
.++-+++-|+ +.||++|+...|.+.++.+.+++.
T Consensus 383 e~KdVLvEfy-APWCgHCk~laP~~eeLAe~~~~~ 416 (493)
T KOG0190|consen 383 EGKDVLVEFY-APWCGHCKALAPIYEELAEKYKDD 416 (493)
T ss_pred cccceEEEEc-CcccchhhhhhhHHHHHHHHhcCC
Confidence 3455666666 999999999999999999999864
No 158
>PHA02125 thioredoxin-like protein
Probab=96.72 E-value=0.004 Score=35.46 Aligned_cols=20 Identities=10% Similarity=0.245 Sum_probs=16.1
Q ss_pred EEeeCCCCchhHHHHHHHHh
Q 044272 36 FSHPGDFTPVCTTELGKMAA 55 (133)
Q Consensus 36 ~f~~~~~c~~C~~~~~~l~~ 55 (133)
..|+++||+.|+...+.|.+
T Consensus 3 v~f~a~wC~~Ck~~~~~l~~ 22 (75)
T PHA02125 3 YLFGAEWCANCKMVKPMLAN 22 (75)
T ss_pred EEEECCCCHhHHHHHHHHHH
Confidence 34459999999999998864
No 159
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=96.36 E-value=0.015 Score=41.05 Aligned_cols=28 Identities=11% Similarity=0.134 Sum_probs=19.8
Q ss_pred CCeEEEEEeeCCCCchhHHHHHHHHhhhh
Q 044272 30 DNWTIIFSHPGDFTPVCTTELGKMAAYVP 58 (133)
Q Consensus 30 ~~~~vl~f~~~~~c~~C~~~~~~l~~~~~ 58 (133)
++.++.+|+ -..||+|++...++.++.+
T Consensus 117 ak~~I~vFt-Dp~CpyC~kl~~~l~~~~~ 144 (251)
T PRK11657 117 APRIVYVFA-DPNCPYCKQFWQQARPWVD 144 (251)
T ss_pred CCeEEEEEE-CCCChhHHHHHHHHHHHhh
Confidence 345555655 5669999999988876543
No 160
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=96.09 E-value=0.039 Score=31.62 Aligned_cols=43 Identities=5% Similarity=0.032 Sum_probs=28.0
Q ss_pred EeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcC
Q 044272 37 SHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIE 86 (133)
Q Consensus 37 f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~ 86 (133)
.|..+|||.|.+...-|.+ .|+....+..+......++....+
T Consensus 12 ly~~~~Cp~C~~ak~~L~~-------~gi~y~~idi~~~~~~~~~~~~~g 54 (79)
T TIGR02190 12 VFTKPGCPFCAKAKATLKE-------KGYDFEEIPLGNDARGRSLRAVTG 54 (79)
T ss_pred EEECCCCHhHHHHHHHHHH-------cCCCcEEEECCCChHHHHHHHHHC
Confidence 3458899999998888864 367766666664444444444444
No 161
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=96.08 E-value=0.048 Score=30.00 Aligned_cols=52 Identities=13% Similarity=0.124 Sum_probs=29.7
Q ss_pred EEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCC-HHHHHHHHHhcCC-CCceeeC
Q 044272 36 FSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDD-VKSHNEWIKDIEA-YTPIIAD 94 (133)
Q Consensus 36 ~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~-~~~~~~~~~~~~~-~~~~~~d 94 (133)
.+|...||+.|.....-|.+ .++.+..+..|. .....++.+..+. ..|.+.+
T Consensus 3 ~l~~~~~c~~c~~~~~~l~~-------~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~ 56 (73)
T cd02976 3 TVYTKPDCPYCKATKRFLDE-------RGIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI 56 (73)
T ss_pred EEEeCCCChhHHHHHHHHHH-------CCCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE
Confidence 34458899999987666654 367766677664 3333344433232 2255544
No 162
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=96.02 E-value=0.053 Score=29.21 Aligned_cols=38 Identities=11% Similarity=0.105 Sum_probs=25.4
Q ss_pred EeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHH
Q 044272 37 SHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEW 81 (133)
Q Consensus 37 f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~ 81 (133)
.|...+||.|.....-|.+ .|+..-.+..+..+..++.
T Consensus 3 vy~~~~C~~C~~~~~~L~~-------~~i~y~~~dv~~~~~~~~~ 40 (60)
T PF00462_consen 3 VYTKPGCPYCKKAKEFLDE-------KGIPYEEVDVDEDEEAREE 40 (60)
T ss_dssp EEESTTSHHHHHHHHHHHH-------TTBEEEEEEGGGSHHHHHH
T ss_pred EEEcCCCcCHHHHHHHHHH-------cCCeeeEcccccchhHHHH
Confidence 3457889999998887754 4677666776644333333
No 163
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=95.99 E-value=0.045 Score=31.28 Aligned_cols=42 Identities=10% Similarity=0.181 Sum_probs=27.8
Q ss_pred EeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCC-HHHHHHH
Q 044272 37 SHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDD-VKSHNEW 81 (133)
Q Consensus 37 f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~-~~~~~~~ 81 (133)
.|.++|||.|....+-|.++. +. ....++-|+.+. .....++
T Consensus 3 ~f~~~~Cp~C~~~~~~L~~~~--i~-~~~~~~~v~~~~~~~~~~~~ 45 (84)
T TIGR02180 3 VFSKSYCPYCKKAKEILAKLN--VK-PAYEVVELDQLSNGSEIQDY 45 (84)
T ss_pred EEECCCChhHHHHHHHHHHcC--CC-CCCEEEEeeCCCChHHHHHH
Confidence 345999999999999998865 21 126677777653 3344443
No 164
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.87 E-value=0.018 Score=35.88 Aligned_cols=51 Identities=8% Similarity=0.134 Sum_probs=36.7
Q ss_pred eecccccCCCeEEEEEeeC-------CCCchhHHHHHHHHhhhhHHHHcCceEEEEeCC
Q 044272 22 FKLHDFIGDNWTIIFSHPG-------DFTPVCTTELGKMAAYVPEFDKREVKLLGLSCD 73 (133)
Q Consensus 22 ~~l~d~~~~~~~vl~f~~~-------~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d 73 (133)
-++++..+|+.+.+.|..+ +|||.|....|-+.+..+... .++.+|-+-..
T Consensus 17 ~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap-~~~~~v~v~VG 74 (128)
T KOG3425|consen 17 ETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAP-EDVHFVHVYVG 74 (128)
T ss_pred HHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCC-CceEEEEEEec
Confidence 3456665666777777744 699999999999998776433 35777777664
No 165
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=95.78 E-value=0.053 Score=34.53 Aligned_cols=26 Identities=8% Similarity=0.098 Sum_probs=19.2
Q ss_pred CCcHHHHHHcCCCCCCCCCCCCCCccceeEEEECCCCcc
Q 044272 94 DPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQV 132 (133)
Q Consensus 94 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i 132 (133)
|.+..++..||+ ..+|+.+++ +||++
T Consensus 78 D~~~~LA~~fgV------------~siPTLl~F-kdGk~ 103 (132)
T PRK11509 78 EQSEAIGDRFGV------------FRFPATLVF-TGGNY 103 (132)
T ss_pred CCCHHHHHHcCC------------ccCCEEEEE-ECCEE
Confidence 356788888888 468888888 56654
No 166
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=95.67 E-value=0.11 Score=30.07 Aligned_cols=36 Identities=8% Similarity=-0.014 Sum_probs=27.2
Q ss_pred EEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCC
Q 044272 36 FSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCD 73 (133)
Q Consensus 36 ~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d 73 (133)
..|..+|||.|.+...-|.++..++ .++.+.-|..+
T Consensus 4 ~iy~~~~C~~C~~a~~~L~~l~~~~--~~i~~~~idi~ 39 (85)
T PRK11200 4 VIFGRPGCPYCVRAKELAEKLSEER--DDFDYRYVDIH 39 (85)
T ss_pred EEEeCCCChhHHHHHHHHHhhcccc--cCCcEEEEECC
Confidence 3455889999999999999987654 36776666665
No 167
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=95.65 E-value=0.045 Score=34.08 Aligned_cols=37 Identities=0% Similarity=0.050 Sum_probs=17.2
Q ss_pred CeEEEEEeeC--CCCchhHHHHHHHHhhhhHHHHc--CceEEEEeC
Q 044272 31 NWTIIFSHPG--DFTPVCTTELGKMAAYVPEFDKR--EVKLLGLSC 72 (133)
Q Consensus 31 ~~~vl~f~~~--~~c~~C~~~~~~l~~~~~~~~~~--~v~vv~is~ 72 (133)
+.++|-| .+ .||. . .+...++..++... .+.+.-|..
T Consensus 19 ~~vlV~F-~A~~Pwc~---k-~~~~~~LA~e~~~aa~~v~lakVd~ 59 (116)
T cd03007 19 KYSLVKF-DTAYPYGE---K-HEAFTRLAESSASATDDLLVAEVGI 59 (116)
T ss_pred CcEEEEE-eCCCCCCC---C-hHHHHHHHHHHHhhcCceEEEEEec
Confidence 3444454 48 5555 3 24444554444322 244444444
No 168
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=95.64 E-value=0.017 Score=41.65 Aligned_cols=42 Identities=12% Similarity=0.070 Sum_probs=31.5
Q ss_pred CeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHc--CceEEEEeCC
Q 044272 31 NWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKR--EVKLLGLSCD 73 (133)
Q Consensus 31 ~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~--~v~vv~is~d 73 (133)
+.++|.|+ +.||+.++...|-+.+..+.++++ .-++|.-.+|
T Consensus 14 elvfv~Fy-AdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VD 57 (375)
T KOG0912|consen 14 ELVFVNFY-ADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVD 57 (375)
T ss_pred eEEeeeee-hhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcc
Confidence 45666665 999999999999999998888755 2445555554
No 169
>cd02979 PHOX_C FAD-dependent Phenol hydoxylase (PHOX) family, C-terminal TRX-fold domain; composed of proteins similar to PHOX from the aerobic topsoil yeast Trichosporon cutaneum. PHOX is a flavoprotein monooxygenase that catalyzes the hydroxylation of phenol and simple phenol derivatives in the ortho position with the consumption of NADPH and oxygen. This is the first step in the biodegradation and detoxification of phenolic compounds. PHOX contains three domains. The substrate and FAD/NAD(P) binding sites are contained in the first two domains, which adopt a complicated folding pattern. The third or C-terminal domain contains a TRX fold and is involved in dimerization. The functional unit of PHOX is a dimer, although active tetramers of the recombinant enzyme can be isolated when overproduced in bacteria.
Probab=95.61 E-value=0.13 Score=34.00 Aligned_cols=112 Identities=13% Similarity=0.145 Sum_probs=62.1
Q ss_pred CCCCCceEEecC-CC-eeeccccc--CCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHc----------------Cce
Q 044272 7 GDSVPNLQVQTN-QG-NFKLHDFI--GDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKR----------------EVK 66 (133)
Q Consensus 7 G~~~p~f~l~~~-~G-~~~l~d~~--~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~----------------~v~ 66 (133)
|..+|++.+... +| ++.|.+.. .|++-+++|-...-++. ....|..+.+.+... =+.
T Consensus 1 G~R~~~a~V~r~aD~~p~~L~~~~~adGrfrI~vFagd~~~~~---~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~~~~~ 77 (167)
T cd02979 1 GRRFPSAPVVRQADALPVHLGHRLPADGRFRIYVFAGDIAPAQ---QKSRLTQLCDALDSPDSFPLRYTPRGADPDSVFD 77 (167)
T ss_pred CCcCCCceEEEecCCCCHhHhhhccCCCCEEEEEEcCCCCchh---HHHHHHHHHHHHcCCcchHhhcCCCCCCCCCcEE
Confidence 667888998876 66 66665533 56777777753333333 334444444444211 144
Q ss_pred EEEEeCCC---------HHHHHHHHHhcCCCC-ceeeCCc------HHHHHHcCCCCCCCCCCCCCCccceeEEEECCCC
Q 044272 67 LLGLSCDD---------VKSHNEWIKDIEAYT-PIIADPN------REIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDH 130 (133)
Q Consensus 67 vv~is~d~---------~~~~~~~~~~~~~~~-~~~~d~~------~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G 130 (133)
++.|.... ++....+....+.+. .++.|.. +.+.+.||+.. ..++.++|.|||
T Consensus 78 ~~~I~~~~~~~~e~~dlP~~~~p~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~gv~~-----------~~g~vvvvRPDg 146 (167)
T cd02979 78 VVTIHAAPRREIELLDLPAVLRPFGEKKGWDYEKIYADDDSYHEGHGDAYEKYGIDP-----------ERGAVVVVRPDQ 146 (167)
T ss_pred EEEEecCCccccchhhCcHhhcCCCCccccceeeEEecCccccCCcccHHHhhCCCC-----------CCCCEEEECCCC
Confidence 66665432 111212222333333 4556643 56888888842 355899999998
Q ss_pred cc
Q 044272 131 QV 132 (133)
Q Consensus 131 ~i 132 (133)
-|
T Consensus 147 yV 148 (167)
T cd02979 147 YV 148 (167)
T ss_pred eE
Confidence 65
No 170
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=95.61 E-value=0.07 Score=29.91 Aligned_cols=51 Identities=10% Similarity=0.181 Sum_probs=32.3
Q ss_pred EeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCCC-ceeeC
Q 044272 37 SHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYT-PIIAD 94 (133)
Q Consensus 37 f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~-~~~~d 94 (133)
+|...+||.|.....-|.+ .|+.+-.+..+......+...+.|... |++..
T Consensus 3 ly~~~~Cp~C~~ak~~L~~-------~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~ 54 (72)
T TIGR02194 3 VYSKNNCVQCKMTKKALEE-------HGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA 54 (72)
T ss_pred EEeCCCCHHHHHHHHHHHH-------CCCceEEEECCCCHHHHHHHHHcCCcccCEEEE
Confidence 4557889999998888865 467766666654444444444555422 55544
No 171
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=95.52 E-value=0.11 Score=28.28 Aligned_cols=50 Identities=12% Similarity=0.065 Sum_probs=30.3
Q ss_pred EeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHH-HHHHHHHhcCCCC-ceee
Q 044272 37 SHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVK-SHNEWIKDIEAYT-PIIA 93 (133)
Q Consensus 37 f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~-~~~~~~~~~~~~~-~~~~ 93 (133)
.|...|||.|+....-|.+. ++.+.-+..+... ...++.+..+... |.+.
T Consensus 4 ly~~~~Cp~C~~~~~~L~~~-------~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~ 55 (72)
T cd02066 4 VFSKSTCPYCKRAKRLLESL-------GIEFEEIDILEDGELREELKELSGWPTVPQIF 55 (72)
T ss_pred EEECCCCHHHHHHHHHHHHc-------CCcEEEEECCCCHHHHHHHHHHhCCCCcCEEE
Confidence 34588899999998888765 4666566655433 3344444444422 4444
No 172
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.50 E-value=0.028 Score=41.98 Aligned_cols=48 Identities=15% Similarity=0.191 Sum_probs=32.8
Q ss_pred CCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHH
Q 044272 29 GDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSH 78 (133)
Q Consensus 29 ~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~ 78 (133)
.++..++.|| ++||.+|....+.+.++...++. -+.+..|..+....+
T Consensus 46 ~~~~~~v~fy-apwc~~c~~l~~~~~~~~~~l~~-~~~~~~vd~~~~~~~ 93 (383)
T KOG0191|consen 46 DDSPWLVEFY-APWCGHCKKLAPTYKKLAKALKG-KVKIGAVDCDEHKDL 93 (383)
T ss_pred cCCceEEEEE-CCCCcchhhhchHHHHHHHHhcC-ceEEEEeCchhhHHH
Confidence 3445666665 99999999999999988888774 244444444433333
No 173
>PRK10329 glutaredoxin-like protein; Provisional
Probab=95.29 E-value=0.16 Score=29.37 Aligned_cols=51 Identities=14% Similarity=0.159 Sum_probs=31.5
Q ss_pred EeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCCC-ceeeC
Q 044272 37 SHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYT-PIIAD 94 (133)
Q Consensus 37 f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~-~~~~d 94 (133)
.|...+||.|......|.+ +|+.+--+..+......+.....+... |++..
T Consensus 5 lYt~~~Cp~C~~ak~~L~~-------~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i 56 (81)
T PRK10329 5 IYTRNDCVQCHATKRAMES-------RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA 56 (81)
T ss_pred EEeCCCCHhHHHHHHHHHH-------CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE
Confidence 4557899999997777744 578877777764343333444444433 55543
No 174
>PF07976 Phe_hydrox_dim: Phenol hydroxylase, C-terminal dimerisation domain ; InterPro: IPR012941 Phenol hydroxylase is a homodimer which hydroxylates phenol to catechol, or similar products. The enzyme is comprised of three domains. The first two domains form the active site. The third domain, this domain, is involved in forming the dimerisation interface. The domain adopts a thioredoxin-like fold [].; PDB: 2DKH_A 2DKI_A 1PN0_A 1FOH_D.
Probab=95.19 E-value=0.061 Score=35.66 Aligned_cols=105 Identities=15% Similarity=0.213 Sum_probs=56.8
Q ss_pred CCCCCCCCCceEEecC-CC-eeeccccc--CCCeEEEEEeeCCCCchhHHHHHHHHhhhh-------HHHH------cCc
Q 044272 3 GLTIGDSVPNLQVQTN-QG-NFKLHDFI--GDNWTIIFSHPGDFTPVCTTELGKMAAYVP-------EFDK------REV 65 (133)
Q Consensus 3 ~l~~G~~~p~f~l~~~-~G-~~~l~d~~--~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~-------~~~~------~~v 65 (133)
.+.+|..+|+..++.. +| .+.|.+.. .|++-+++|-...-.+.+...+..|.+..+ .|.. .-+
T Consensus 29 ~l~~G~Rlp~~~v~r~aD~~p~~l~~~l~sdGrfri~vFagd~~~~~~~~~l~~l~~~L~~~~s~~~r~~~~~~~~~s~~ 108 (169)
T PF07976_consen 29 GLRPGRRLPSAKVVRHADGNPVHLQDDLPSDGRFRILVFAGDISLPEQLSRLSALADYLESPSSFLSRFTPKDRDPDSVF 108 (169)
T ss_dssp TS-TTCB----EEEETTTTEEEEGGGG--SSS-EEEEEEEETTTTCHCCCHHHHHHHHHHSTTSHHHHHSBTTS-TTSSE
T ss_pred CcCCccccCCceEEEEcCCCChhHhhhcccCCCEEEEEEeCCCccchhHHHHHHHHHHHHhcchHHHhcCCCCCCCCCee
Confidence 5889999999999876 77 78887744 678888888755556665555555554432 2222 126
Q ss_pred eEEEEeCCC---------HHHHHHHHHhcCCCC-ceeeCC------cHHHHHHcCCCC
Q 044272 66 KLLGLSCDD---------VKSHNEWIKDIEAYT-PIIADP------NREIIKQLNMVD 107 (133)
Q Consensus 66 ~vv~is~d~---------~~~~~~~~~~~~~~~-~~~~d~------~~~~~~~~~~~~ 107 (133)
.++.|...+ ++..+.+..+++.+. .++.|. .+.+.+.|||..
T Consensus 109 ~~~~I~~~~~~~~e~~dlP~~~~p~~~~~~~~~~~vy~Dd~~~~~~~g~~y~~~Gid~ 166 (169)
T PF07976_consen 109 DVLLIHSSPRDEVELFDLPEIFRPFDGKRGWDYWKVYVDDESYHSGHGDAYEKYGIDR 166 (169)
T ss_dssp EEEEEESS-CCCS-GGGS-CCCS-EETTTTC--SSEEE-S-SSSSTT--HHHHCTBBT
T ss_pred EEEEEecCCCCceeHHHCcHhhCcccCCCCccceeEEecCcccccCcccHHHhhCCCc
Confidence 677777532 233344444445443 666663 478889999843
No 175
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=95.11 E-value=0.15 Score=28.92 Aligned_cols=45 Identities=13% Similarity=0.208 Sum_probs=27.8
Q ss_pred EEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCC-HHHHHHHHHhcCC
Q 044272 36 FSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDD-VKSHNEWIKDIEA 87 (133)
Q Consensus 36 ~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~-~~~~~~~~~~~~~ 87 (133)
..|..++||.|.....-|.+. |+..--+..+. ++...++.+..+.
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~~-------~i~~~~~di~~~~~~~~~~~~~~g~ 47 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSSK-------GVTFTEIRVDGDPALRDEMMQRSGR 47 (79)
T ss_pred EEEecCCChhHHHHHHHHHHc-------CCCcEEEEecCCHHHHHHHHHHhCC
Confidence 345688999999988888753 55544444442 3444555554443
No 176
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=95.06 E-value=0.17 Score=29.46 Aligned_cols=37 Identities=8% Similarity=0.037 Sum_probs=24.5
Q ss_pred EEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCC
Q 044272 35 IFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCD 73 (133)
Q Consensus 35 l~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d 73 (133)
+..|..+|||.|.....-|.++..+.. ++.+.-+..+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~--~i~~~~idi~ 38 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA--DFEFRYIDIH 38 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC--CCcEEEEECC
Confidence 344568899999999998887654322 3455455543
No 177
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=95.05 E-value=0.16 Score=28.29 Aligned_cols=31 Identities=6% Similarity=0.131 Sum_probs=21.3
Q ss_pred EeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCC
Q 044272 37 SHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDD 74 (133)
Q Consensus 37 f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~ 74 (133)
.|..++||.|.+...-|.+ .|+....+..+.
T Consensus 5 lys~~~Cp~C~~ak~~L~~-------~~i~~~~~~v~~ 35 (72)
T cd03029 5 LFTKPGCPFCARAKAALQE-------NGISYEEIPLGK 35 (72)
T ss_pred EEECCCCHHHHHHHHHHHH-------cCCCcEEEECCC
Confidence 3457889999998777764 366655556553
No 178
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=95.04 E-value=0.29 Score=27.32 Aligned_cols=45 Identities=13% Similarity=0.117 Sum_probs=29.1
Q ss_pred EEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCC-HHHHHHHHHhcCC
Q 044272 36 FSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDD-VKSHNEWIKDIEA 87 (133)
Q Consensus 36 ~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~-~~~~~~~~~~~~~ 87 (133)
..|..++||.|.....-|.+ .|+.+-.+..+. ++...++.+..+.
T Consensus 3 ~ly~~~~Cp~C~~ak~~L~~-------~~i~~~~i~i~~~~~~~~~~~~~~~~ 48 (75)
T cd03418 3 EIYTKPNCPYCVRAKALLDK-------KGVDYEEIDVDGDPALREEMINRSGG 48 (75)
T ss_pred EEEeCCCChHHHHHHHHHHH-------CCCcEEEEECCCCHHHHHHHHHHhCC
Confidence 34557889999998877765 366665666553 4455555555554
No 179
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=95.00 E-value=0.17 Score=30.38 Aligned_cols=38 Identities=8% Similarity=-0.002 Sum_probs=24.8
Q ss_pred CCCeEEEEEee---CCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCC
Q 044272 29 GDNWTIIFSHP---GDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCD 73 (133)
Q Consensus 29 ~~~~~vl~f~~---~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d 73 (133)
..++++|+--. .+|||+|.+...-|.+. |+....+..+
T Consensus 10 ~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~-------~i~~~~~di~ 50 (97)
T TIGR00365 10 KENPVVLYMKGTPQFPQCGFSARAVQILKAC-------GVPFAYVNVL 50 (97)
T ss_pred ccCCEEEEEccCCCCCCCchHHHHHHHHHHc-------CCCEEEEECC
Confidence 45567666432 27899999988777764 5555555554
No 180
>PHA03050 glutaredoxin; Provisional
Probab=94.92 E-value=0.24 Score=30.33 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=18.3
Q ss_pred CCCeEEEEEeeCCCCchhHHHHHHHHhh
Q 044272 29 GDNWTIIFSHPGDFTPVCTTELGKMAAY 56 (133)
Q Consensus 29 ~~~~~vl~f~~~~~c~~C~~~~~~l~~~ 56 (133)
..+.++| |..+|||+|.+...-|.+.
T Consensus 11 ~~~~V~v--ys~~~CPyC~~ak~~L~~~ 36 (108)
T PHA03050 11 ANNKVTI--FVKFTCPFCRNALDILNKF 36 (108)
T ss_pred ccCCEEE--EECCCChHHHHHHHHHHHc
Confidence 3344443 3488899999988888765
No 181
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=94.86 E-value=0.27 Score=34.33 Aligned_cols=37 Identities=14% Similarity=0.082 Sum_probs=24.8
Q ss_pred CCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEE
Q 044272 29 GDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGL 70 (133)
Q Consensus 29 ~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~i 70 (133)
.++.++++|. -..||+|++.-+++.++. +.+++|..+
T Consensus 106 ~~k~~I~vFt-Dp~CpyCkkl~~~l~~~~----~~~v~v~~~ 142 (232)
T PRK10877 106 QEKHVITVFT-DITCGYCHKLHEQMKDYN----ALGITVRYL 142 (232)
T ss_pred CCCEEEEEEE-CCCChHHHHHHHHHHHHh----cCCeEEEEE
Confidence 3455656655 666999999988877653 346776444
No 182
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=94.82 E-value=0.13 Score=29.21 Aligned_cols=34 Identities=9% Similarity=0.216 Sum_probs=24.2
Q ss_pred EEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCC
Q 044272 36 FSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDD 74 (133)
Q Consensus 36 ~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~ 74 (133)
.+|...|||.|.....-|.++.. ...++-|..+.
T Consensus 3 ~~y~~~~Cp~C~~~~~~l~~~~~-----~~~~~~v~~~~ 36 (82)
T cd03419 3 VVFSKSYCPYCKRAKSLLKELGV-----KPAVVELDQHE 36 (82)
T ss_pred EEEEcCCCHHHHHHHHHHHHcCC-----CcEEEEEeCCC
Confidence 44558999999999998888644 24555666543
No 183
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=94.79 E-value=0.16 Score=31.03 Aligned_cols=70 Identities=10% Similarity=0.206 Sum_probs=40.6
Q ss_pred EEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCCCceeeCCcHHHHHHcCCCCCCCCC
Q 044272 33 TIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPIIADPNREIIKQLNMVDPDEKD 112 (133)
Q Consensus 33 ~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 112 (133)
.+++|=.++.||++.....++.+..+...+. +.+..|-+-... +..+.++..||+..
T Consensus 21 ~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~-~~~y~l~v~~~R-----------------~vSn~IAe~~~V~H----- 77 (105)
T PF11009_consen 21 PVLIFKHSTRCPISAMALREFEKFWEESPDE-IPVYYLDVIEYR-----------------PVSNAIAEDFGVKH----- 77 (105)
T ss_dssp EEEEEEE-TT-HHHHHHHHHHHHHHHHHT-----EEEEEGGGGH-----------------HHHHHHHHHHT--------
T ss_pred cEEEEEeCCCChhhHHHHHHHHHHhhcCCcc-ceEEEEEEEeCc-----------------hhHHHHHHHhCCCc-----
Confidence 4555566888999999999998877665543 555555442111 12457788888863
Q ss_pred CCCCCccceeEEEECCCCcc
Q 044272 113 SSGKQLPSRALHIVGPDHQV 132 (133)
Q Consensus 113 ~~~~~~~~p~~~lid~~G~i 132 (133)
-.|..+|| +||++
T Consensus 78 ------eSPQ~ili-~~g~~ 90 (105)
T PF11009_consen 78 ------ESPQVILI-KNGKV 90 (105)
T ss_dssp -------SSEEEEE-ETTEE
T ss_pred ------CCCcEEEE-ECCEE
Confidence 57888888 57765
No 184
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=94.77 E-value=0.23 Score=29.19 Aligned_cols=28 Identities=7% Similarity=0.042 Sum_probs=19.1
Q ss_pred CCCeEEEEEee---CCCCchhHHHHHHHHhh
Q 044272 29 GDNWTIIFSHP---GDFTPVCTTELGKMAAY 56 (133)
Q Consensus 29 ~~~~~vl~f~~---~~~c~~C~~~~~~l~~~ 56 (133)
++++++|+--. .+|||.|.....-|.+.
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~ 36 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQL 36 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHc
Confidence 55667666431 15899999887777765
No 185
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=94.49 E-value=0.059 Score=42.09 Aligned_cols=38 Identities=11% Similarity=0.003 Sum_probs=24.4
Q ss_pred CCCeEEEEEeeCCCCchhHHHHHHHH-hhhhHHHHcCceE
Q 044272 29 GDNWTIIFSHPGDFTPVCTTELGKMA-AYVPEFDKREVKL 67 (133)
Q Consensus 29 ~~~~~vl~f~~~~~c~~C~~~~~~l~-~~~~~~~~~~v~v 67 (133)
++|+++|.|+ +.||=-|+..-+..- +.+...+-.++..
T Consensus 473 ~~~pVmlDfy-AdWCvtCK~~e~~tfsd~~v~~~~~~~vl 511 (569)
T COG4232 473 KAKPVMLDFY-ADWCVTCKENEKYTFSDPQVQQALQDVVL 511 (569)
T ss_pred CCCcEEEeee-hhHHHHhHhhhhhccCcHHHHHhcCCeEE
Confidence 3458999988 999999998766553 3333333334443
No 186
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.35 E-value=0.23 Score=32.57 Aligned_cols=85 Identities=6% Similarity=0.056 Sum_probs=46.8
Q ss_pred CCCeEEEEEeeCCCCchhHHHHHHHHh---hhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCCCceeeCCcHHHHHHcCC
Q 044272 29 GDNWTIIFSHPGDFTPVCTTELGKMAA---YVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPIIADPNREIIKQLNM 105 (133)
Q Consensus 29 ~~~~~vl~f~~~~~c~~C~~~~~~l~~---~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 105 (133)
.+++.++. |.+..|+.|...-..+.. +++.+.. .+.++-+.......+. |.. |. -...-...++++.|++
T Consensus 41 ~~Kylllm-fes~~C~yC~~~KKd~~~~krlrEylk~-hf~~~~l~i~~skpv~-f~~--g~--kee~~s~~ELa~kf~v 113 (182)
T COG2143 41 NDKYLLLM-FESNGCSYCERFKKDLKNVKRLREYLKE-HFSAYYLNISYSKPVL-FKV--GD--KEEKMSTEELAQKFAV 113 (182)
T ss_pred cCcEEEEE-EcCCCChHHHHHHHhhcchHHHHHHHhh-CeEEEEEEeccCcceE-eec--Cc--eeeeecHHHHHHHhcc
Confidence 45555555 457779999988777643 3333332 2444333332111110 000 00 0111124588999999
Q ss_pred CCCCCCCCCCCCccceeEEEECCCCcc
Q 044272 106 VDPDEKDSSGKQLPSRALHIVGPDHQV 132 (133)
Q Consensus 106 ~~~~~~~~~~~~~~~p~~~lid~~G~i 132 (133)
..+|+.++.|.+|+-
T Consensus 114 ------------rstPtfvFfdk~Gk~ 128 (182)
T COG2143 114 ------------RSTPTFVFFDKTGKT 128 (182)
T ss_pred ------------ccCceEEEEcCCCCE
Confidence 579999999999863
No 187
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=94.24 E-value=0.35 Score=27.04 Aligned_cols=42 Identities=10% Similarity=-0.030 Sum_probs=26.7
Q ss_pred eeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCC-HHHHHHHHHhcC
Q 044272 38 HPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDD-VKSHNEWIKDIE 86 (133)
Q Consensus 38 ~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~-~~~~~~~~~~~~ 86 (133)
|..++||.|++...-|.+ .|+.+..+..+. ++...++.+..+
T Consensus 6 y~~~~C~~C~ka~~~L~~-------~gi~~~~~di~~~~~~~~el~~~~g 48 (73)
T cd03027 6 YSRLGCEDCTAVRLFLRE-------KGLPYVEINIDIFPERKAELEERTG 48 (73)
T ss_pred EecCCChhHHHHHHHHHH-------CCCceEEEECCCCHHHHHHHHHHhC
Confidence 346789999998887775 367766666653 333344444444
No 188
>PRK10638 glutaredoxin 3; Provisional
Probab=94.19 E-value=0.34 Score=27.87 Aligned_cols=49 Identities=20% Similarity=0.224 Sum_probs=30.3
Q ss_pred EeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCH-HHHHHHHHhcCCCC-cee
Q 044272 37 SHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDV-KSHNEWIKDIEAYT-PII 92 (133)
Q Consensus 37 f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~-~~~~~~~~~~~~~~-~~~ 92 (133)
+|...+||.|.....-|.+. |+....+..+.. +...++.+..+... |.+
T Consensus 6 ly~~~~Cp~C~~a~~~L~~~-------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i 56 (83)
T PRK10638 6 IYTKATCPFCHRAKALLNSK-------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQI 56 (83)
T ss_pred EEECCCChhHHHHHHHHHHc-------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEE
Confidence 45578899999988887764 566555565533 33445555555433 554
No 189
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=94.18 E-value=0.43 Score=37.24 Aligned_cols=101 Identities=14% Similarity=0.153 Sum_probs=62.0
Q ss_pred CCCCCCCCceEEecCCC-eeecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHH
Q 044272 4 LTIGDSVPNLQVQTNQG-NFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWI 82 (133)
Q Consensus 4 l~~G~~~p~f~l~~~~G-~~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~ 82 (133)
..+|+.+|+..+.+..| ...+.++.+++.++|.|-.. +..... ... .+.....+..++.+....... .
T Consensus 411 ~~~G~~~p~~~~~~~~~~~~~~d~~~~~~~~ll~~~~~---~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~---~- 479 (538)
T PRK06183 411 SPVGTLFPQPRVELGGGDRGLLDDVLGPGFAVLGWGCD---PLAGLS-DEQ---RARWRALGARFVQVVPAVQAH---T- 479 (538)
T ss_pred CCcccCcCCCeeEcCCCCcccchhccCCceEEEEecCC---chhcCC-HHH---HHHHHHcCCeEEEEecccccc---c-
Confidence 35799999998887766 44566676666777766211 211110 111 122444577777776542110 0
Q ss_pred HhcCCCCceeeCCcHHHHHHcCCCCCCCCCCCCCCccceeEEEECCCCcc
Q 044272 83 KDIEAYTPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQV 132 (133)
Q Consensus 83 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i 132 (133)
.....+.|.++.+.+.|+. +-...+||.||+.|
T Consensus 480 ----~~~~~~~d~~g~~~~~~~~-------------~~~~~~lvRPD~~v 512 (538)
T PRK06183 480 ----AQDDHDSDVDGALRAWLAR-------------HGASAVLLRPDRYV 512 (538)
T ss_pred ----CCCceeecCCchHHHHHHh-------------CCCEEEEECCCEEE
Confidence 1236678999999999988 34577899999865
No 190
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=94.06 E-value=0.26 Score=31.69 Aligned_cols=49 Identities=12% Similarity=0.097 Sum_probs=32.3
Q ss_pred eecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHH-HHcCceEEEEeC
Q 044272 22 FKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEF-DKREVKLLGLSC 72 (133)
Q Consensus 22 ~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~-~~~~v~vv~is~ 72 (133)
+.+.+- ..+.+|+.|+ .-.||+|....+.+.++.+++ ++..++++.+..
T Consensus 5 ~~~G~~-~a~~~v~~f~-d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~ 54 (162)
T PF13462_consen 5 PTIGNP-DAPITVTEFF-DFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPV 54 (162)
T ss_dssp EEES-T-TTSEEEEEEE--TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEES
T ss_pred CeecCC-CCCeEEEEEE-CCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEc
Confidence 344443 4455555555 666999999999999998887 233477777754
No 191
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=93.99 E-value=0.088 Score=33.44 Aligned_cols=36 Identities=11% Similarity=0.050 Sum_probs=24.5
Q ss_pred EEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEE
Q 044272 33 TIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGL 70 (133)
Q Consensus 33 ~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~i 70 (133)
+.|..|...+||+|....+.+.++...+. .++++.+
T Consensus 7 ~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~--~~~~~~~ 42 (154)
T cd03023 7 VTIVEFFDYNCGYCKKLAPELEKLLKEDP--DVRVVFK 42 (154)
T ss_pred EEEEEEECCCChhHHHhhHHHHHHHHHCC--CceEEEE
Confidence 44444447789999999999988765543 3554443
No 192
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=93.92 E-value=0.27 Score=32.45 Aligned_cols=22 Identities=5% Similarity=-0.062 Sum_probs=13.6
Q ss_pred CCCeEEEEEeeCCCCchhHHHHH
Q 044272 29 GDNWTIIFSHPGDFTPVCTTELG 51 (133)
Q Consensus 29 ~~~~~vl~f~~~~~c~~C~~~~~ 51 (133)
.+|+++|.+. .+||..|..+..
T Consensus 36 e~KpIfl~ig-~~~C~wChvM~~ 57 (163)
T PF03190_consen 36 ENKPIFLSIG-YSWCHWCHVMER 57 (163)
T ss_dssp HT--EEEEEE--TT-HHHHHHHH
T ss_pred cCCcEEEEEE-ecCCcchhhhcc
Confidence 4567777766 788999998765
No 193
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.83 E-value=0.12 Score=38.68 Aligned_cols=51 Identities=10% Similarity=0.009 Sum_probs=35.6
Q ss_pred eEEEEEeeCCCCchhHHHHHHHHhhhhHHHH-cCceEEEEeCCCHHHHHHHHH
Q 044272 32 WTIIFSHPGDFTPVCTTELGKMAAYVPEFDK-REVKLLGLSCDDVKSHNEWIK 83 (133)
Q Consensus 32 ~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~-~~v~vv~is~d~~~~~~~~~~ 83 (133)
..++.| ++.||++|+...+.+.++...++. .++.+..+..+..........
T Consensus 164 ~~lv~f-~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~ 215 (383)
T KOG0191|consen 164 DWLVEF-YAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLE 215 (383)
T ss_pred ceEEEE-eccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhc
Confidence 344555 599999999999999999888874 567777777663333333333
No 194
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=93.78 E-value=0.38 Score=27.75 Aligned_cols=50 Identities=18% Similarity=0.175 Sum_probs=31.3
Q ss_pred eeCCCCchhHHHHHHHHhhhhHHHHcCce--EEEEeCCCHHHHHHHHHhcC-CCC-ceeeC
Q 044272 38 HPGDFTPVCTTELGKMAAYVPEFDKREVK--LLGLSCDDVKSHNEWIKDIE-AYT-PIIAD 94 (133)
Q Consensus 38 ~~~~~c~~C~~~~~~l~~~~~~~~~~~v~--vv~is~d~~~~~~~~~~~~~-~~~-~~~~d 94 (133)
|..++||+|.+...-|.+ +|+. .+-+..++.+..++++++.. ... |.+..
T Consensus 6 yt~~~CPyC~~ak~~L~~-------~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i 59 (80)
T COG0695 6 YTKPGCPYCKRAKRLLDR-------KGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI 59 (80)
T ss_pred EECCCCchHHHHHHHHHH-------cCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE
Confidence 446679999998887774 3555 44444555556677777773 332 54443
No 195
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=93.56 E-value=0.51 Score=37.76 Aligned_cols=119 Identities=13% Similarity=0.136 Sum_probs=65.8
Q ss_pred CCCCCCCCCceEEecC-CC-eeeccccc--CCCeEEEEEeeCCCCchhHHHHHHHHhhhh--------HHHHcC------
Q 044272 3 GLTIGDSVPNLQVQTN-QG-NFKLHDFI--GDNWTIIFSHPGDFTPVCTTELGKMAAYVP--------EFDKRE------ 64 (133)
Q Consensus 3 ~l~~G~~~p~f~l~~~-~G-~~~l~d~~--~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~--------~~~~~~------ 64 (133)
.+.+|..+|++.+... ++ .+.|.+.. .|++.+++|-...-.+.....+..+.+..+ .|...+
T Consensus 462 ~~~~G~r~~~~~v~~~~d~~~~~l~~~~~~~g~~~l~~f~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 541 (634)
T PRK08294 462 GFPIGKRFHSAPVIRLADAKPVHLGHAATADGRWRIYAFADAADPAGPGSALDALCEFLAESPDSPLRRFTPSGADIDAV 541 (634)
T ss_pred CCCCceeCCCCceeeccCCCchhHhhhcccCCCEEEEEEcCCCCcchhHHHHHHHHHHHhhCccchHhhcCCCCCCCCcE
Confidence 4789999999999876 55 56655432 667877776533223444444444433331 111111
Q ss_pred ceEEEEeCCC---------HHHHHHHHHhcCC-CC-ceeeCC--cHHHHHHcCCCCCCCCCCCCCCccceeEEEECCCCc
Q 044272 65 VKLLGLSCDD---------VKSHNEWIKDIEA-YT-PIIADP--NREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQ 131 (133)
Q Consensus 65 v~vv~is~d~---------~~~~~~~~~~~~~-~~-~~~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~ 131 (133)
+.++.|.... ++....+...+++ +. .++.|. .....+.||+.. ...+.++|.|||-
T Consensus 542 ~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~-----------~~g~~vvvRPD~~ 610 (634)
T PRK08294 542 IDVRAIFQQPHRELDLEDVPALLLPRKGRFGLTDYEKVFCADLSGADIFDLRGIDR-----------DRGAVVVVRPDQY 610 (634)
T ss_pred EEEEEEecCCCCccchhhCcHhhCCcccccCccchhheecCCCchhhHHHhhCCCC-----------CceeEEEECCCCc
Confidence 4455555431 2223333344444 32 444442 245778888843 3458999999996
Q ss_pred c
Q 044272 132 V 132 (133)
Q Consensus 132 i 132 (133)
|
T Consensus 611 v 611 (634)
T PRK08294 611 V 611 (634)
T ss_pred e
Confidence 5
No 196
>PRK06184 hypothetical protein; Provisional
Probab=93.51 E-value=0.57 Score=36.19 Aligned_cols=88 Identities=19% Similarity=0.329 Sum_probs=56.8
Q ss_pred CCCCCCCCceEEecCCC-eeecccccC-CCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHH
Q 044272 4 LTIGDSVPNLQVQTNQG-NFKLHDFIG-DNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEW 81 (133)
Q Consensus 4 l~~G~~~p~f~l~~~~G-~~~l~d~~~-~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~ 81 (133)
+.+|..+|+..+...+| ++++.|+.+ +++++|.|-...+ . . ....++.++.+....
T Consensus 386 ~~~G~r~p~~~~~~~~~~~~~l~d~~~~~~~~ll~~~~~~~--~------~-------~~~~~~~~~~~~~~~------- 443 (502)
T PRK06184 386 LRAGDRAPDAPLLGAAGQPTRLFDLFRGPHWTLLAFGAGAA--A------I-------LARRGLRIHRVGDAA------- 443 (502)
T ss_pred CCCcCCCCCchhccCCCceeeHHHhhCCCcEEEEEecCCch--h------h-------hhhcCceEEEecccC-------
Confidence 56899999999877666 677777654 5677776532111 0 0 112356666654321
Q ss_pred HHhcCCCCceeeCCcHHHHHHcCCCCCCCCCCCCCCccceeEEEECCCCcc
Q 044272 82 IKDIEAYTPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQV 132 (133)
Q Consensus 82 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i 132 (133)
....+.|..+.+...|++ ...+.+||.|||-|
T Consensus 444 ------~~~~~~d~~g~~~~~~~~-------------~~~~~~lvRPDg~v 475 (502)
T PRK06184 444 ------EGGDLVDDAGHFRDAYGL-------------TGGTLVLVRPDGYV 475 (502)
T ss_pred ------CCCceeCCCccHHHHhcC-------------CCCcEEEECCCcce
Confidence 123467888888888888 34468899999976
No 197
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=93.46 E-value=0.32 Score=27.95 Aligned_cols=34 Identities=9% Similarity=0.042 Sum_probs=23.5
Q ss_pred EeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEe
Q 044272 37 SHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLS 71 (133)
Q Consensus 37 f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is 71 (133)
+|....||+|....+.+.++.... ..++++..+.
T Consensus 3 ~f~d~~Cp~C~~~~~~l~~~~~~~-~~~~~~~~~~ 36 (98)
T cd02972 3 EFFDPLCPYCYLFEPELEKLLYAD-DGGVRVVYRP 36 (98)
T ss_pred EEECCCCHhHHhhhHHHHHHHhhc-CCcEEEEEec
Confidence 444778999999999999876332 3346655444
No 198
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=93.43 E-value=0.6 Score=28.95 Aligned_cols=43 Identities=16% Similarity=0.377 Sum_probs=25.1
Q ss_pred CCCeEEEEEeeCC----CCchhHHHHH--HHHhhhhHHHHcCceEEEEeCCCHH
Q 044272 29 GDNWTIIFSHPGD----FTPVCTTELG--KMAAYVPEFDKREVKLLGLSCDDVK 76 (133)
Q Consensus 29 ~~~~~vl~f~~~~----~c~~C~~~~~--~l~~~~~~~~~~~v~vv~is~d~~~ 76 (133)
.+|.++|+++ +. ||..|+..+. ++.+. + +.+.-+++.+.++++
T Consensus 16 e~K~llVylh-s~~~~~~~~fc~~~l~~~~v~~~---l-n~~fv~w~~dv~~~e 64 (116)
T cd02991 16 ELRFLLVYLH-GDDHQDTDEFCRNTLCAPEVIEY---I-NTRMLFWACSVAKPE 64 (116)
T ss_pred hCCEEEEEEe-CCCCccHHHHHHHHcCCHHHHHH---H-HcCEEEEEEecCChH
Confidence 4566666766 55 7888876643 23332 2 235666666666555
No 199
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=93.34 E-value=0.19 Score=30.26 Aligned_cols=26 Identities=12% Similarity=0.204 Sum_probs=17.6
Q ss_pred CCCeEEEEEeeCCCCchhHHHHHHHHhh
Q 044272 29 GDNWTIIFSHPGDFTPVCTTELGKMAAY 56 (133)
Q Consensus 29 ~~~~~vl~f~~~~~c~~C~~~~~~l~~~ 56 (133)
...+++|+ ..+|||.|.+...-|.+.
T Consensus 6 ~~~~Vvvy--sk~~Cp~C~~ak~~L~~~ 31 (99)
T TIGR02189 6 SEKAVVIF--SRSSCCMCHVVKRLLLTL 31 (99)
T ss_pred ccCCEEEE--ECCCCHHHHHHHHHHHHc
Confidence 33445444 378899999887766654
No 200
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=92.52 E-value=0.81 Score=35.78 Aligned_cols=98 Identities=15% Similarity=0.277 Sum_probs=58.9
Q ss_pred CCCCCCCCceEEecCCC-eeecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHH
Q 044272 4 LTIGDSVPNLQVQTNQG-NFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWI 82 (133)
Q Consensus 4 l~~G~~~p~f~l~~~~G-~~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~ 82 (133)
..+|+.+|+..+.. +| ..++.|+.+++.++|.|- .. ... ....+. ......+++++.+..+...
T Consensus 427 ~~pG~r~p~~~~~~-~~~~~~l~dl~g~~f~ll~~~-~~-~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~------ 491 (547)
T PRK08132 427 PVPGAPAPDAPVRA-DGEPGWLLDLLGGGFTLLLFG-DD-AAA-----AALLQA-LAAAALPVRVVAVVPAGAA------ 491 (547)
T ss_pred CCCCCCCCCCcccC-CCCceEHHHhcCCCEEEEEec-CC-chh-----hhhhhh-hhccCCceEEEEEecCccc------
Confidence 46899999988874 45 788888876667777653 21 111 111111 1112224556666544211
Q ss_pred HhcCCCCceeeCCcHHHHHHcCCCCCCCCCCCCCCccceeEEEECCCCcc
Q 044272 83 KDIEAYTPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQV 132 (133)
Q Consensus 83 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i 132 (133)
..+...+.|.++.+.+.|++ .....+||.|||-|
T Consensus 492 ---~~~~~~~~d~~~~~~~~~~~-------------~~~~~~LvRPDg~v 525 (547)
T PRK08132 492 ---QAAAGVLEDADGLAAERYDA-------------RPGTVYLIRPDQHV 525 (547)
T ss_pred ---ccCcccccCcccHHHHHhCC-------------CCCeEEEECCCceE
Confidence 01224567888999999988 34578999999976
No 201
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=92.37 E-value=0.76 Score=26.41 Aligned_cols=56 Identities=11% Similarity=0.119 Sum_probs=38.7
Q ss_pred EEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCCCceeeCCc
Q 044272 35 IFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPIIADPN 96 (133)
Q Consensus 35 l~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~ 96 (133)
|.+|....|+.|......|.++.... ++.+-.|..++.+. +.++++...|++.-.+
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~---~~~l~~vDI~~d~~---l~~~Y~~~IPVl~~~~ 57 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF---PFELEEVDIDEDPE---LFEKYGYRIPVLHIDG 57 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS---TCEEEEEETTTTHH---HHHHSCTSTSEEEETT
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc---CceEEEEECCCCHH---HHHHhcCCCCEEEEcC
Confidence 45666888999999988888765443 47777777763333 7778887777776433
No 202
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=91.95 E-value=0.21 Score=39.05 Aligned_cols=30 Identities=7% Similarity=0.171 Sum_probs=23.9
Q ss_pred eEEEEEeeCCCCchhHHHHHHHHhhhhHHHH
Q 044272 32 WTIIFSHPGDFTPVCTTELGKMAAYVPEFDK 62 (133)
Q Consensus 32 ~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~ 62 (133)
..+|.|| ++||++|++..|.+.++...+++
T Consensus 59 ~~lVEFy-~swCGhCr~FAPtfk~~A~dl~~ 88 (606)
T KOG1731|consen 59 AKLVEFY-NSWCGHCRAFAPTFKKFAKDLEK 88 (606)
T ss_pred hHHHHHH-HhhhhhhhhcchHHHHHHHHHhc
Confidence 3455555 99999999999999998777663
No 203
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=91.55 E-value=0.4 Score=31.38 Aligned_cols=38 Identities=18% Similarity=0.173 Sum_probs=26.7
Q ss_pred CCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEE
Q 044272 29 GDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLL 68 (133)
Q Consensus 29 ~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv 68 (133)
.++..++.|+ .-.||+|...-+.+.++..++. .++.+.
T Consensus 14 ~~~~~i~~f~-D~~Cp~C~~~~~~~~~~~~~~~-~~v~~~ 51 (178)
T cd03019 14 SGKPEVIEFF-SYGCPHCYNFEPILEAWVKKLP-KDVKFE 51 (178)
T ss_pred CCCcEEEEEE-CCCCcchhhhhHHHHHHHHhCC-CCceEE
Confidence 4455566665 5569999999999998877763 245543
No 204
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=91.48 E-value=0.97 Score=27.82 Aligned_cols=64 Identities=11% Similarity=0.027 Sum_probs=41.2
Q ss_pred EEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeC--C--CHHHHHHHHHhcCCCCceeeCCcHHHHHHcCCC
Q 044272 36 FSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSC--D--DVKSHNEWIKDIEAYTPIIADPNREIIKQLNMV 106 (133)
Q Consensus 36 ~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~--d--~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 106 (133)
.+|....|+.|++...-|.+. |+.+-.+.. + +.+.+.+|.+..+....-+....+...+.++..
T Consensus 3 ~iY~~~~C~~c~ka~~~L~~~-------gi~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~n~~~~~~k~l~~~ 70 (115)
T cd03032 3 KLYTSPSCSSCRKAKQWLEEH-------QIPFEERNLFKQPLTKEELKEILSLTENGVEDIISTRSKAFKNLNID 70 (115)
T ss_pred EEEeCCCCHHHHHHHHHHHHC-------CCceEEEecCCCcchHHHHHHHHHHhcCCHHHHHhcCcHHHHHcCCC
Confidence 355678899999987777653 565555543 3 477888999988654422223455566665553
No 205
>PRK10824 glutaredoxin-4; Provisional
Probab=91.28 E-value=0.79 Score=28.48 Aligned_cols=27 Identities=11% Similarity=0.240 Sum_probs=19.2
Q ss_pred CCCeEEEEEeeC----CCCchhHHHHHHHHhh
Q 044272 29 GDNWTIIFSHPG----DFTPVCTTELGKMAAY 56 (133)
Q Consensus 29 ~~~~~vl~f~~~----~~c~~C~~~~~~l~~~ 56 (133)
..+++||+-- + ++||+|.+...-|.++
T Consensus 13 ~~~~Vvvf~K-g~~~~p~Cpyc~~ak~lL~~~ 43 (115)
T PRK10824 13 AENPILLYMK-GSPKLPSCGFSAQAVQALSAC 43 (115)
T ss_pred hcCCEEEEEC-CCCCCCCCchHHHHHHHHHHc
Confidence 4456666533 3 4899999988887765
No 206
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=91.22 E-value=0.81 Score=29.00 Aligned_cols=65 Identities=9% Similarity=0.148 Sum_probs=40.0
Q ss_pred EEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeC--C--CHHHHHHHHHhcCCCCceeeCCcHHHHHHcCCC
Q 044272 35 IFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSC--D--DVKSHNEWIKDIEAYTPIIADPNREIIKQLNMV 106 (133)
Q Consensus 35 l~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~--d--~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 106 (133)
+.+|...+|+.|++...-|.+ .|+.+-.+.. + +.+.+.++....+....-+....+...+.++..
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~-------~gi~~~~idi~~~~~~~~eL~~~l~~~~~g~~~lin~~~~~~k~l~~~ 70 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEE-------HDIPFTERNIFSSPLTIDEIKQILRMTEDGTDEIISTRSKVFQKLNVD 70 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------cCCCcEEeeccCChhhHHHHHHHHHHhcCCHHHHHhcCcHHHHhCCCC
Confidence 345668889999997766654 3565544443 3 467888888887544422223455555655553
No 207
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=91.02 E-value=0.75 Score=27.72 Aligned_cols=63 Identities=5% Similarity=-0.024 Sum_probs=37.6
Q ss_pred EEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeC----CCHHHHHHHHHhcCCCCceeeCCcHHHHHHcCC
Q 044272 36 FSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSC----DDVKSHNEWIKDIEAYTPIIADPNREIIKQLNM 105 (133)
Q Consensus 36 ~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~----d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 105 (133)
.+|..++|+.|+....-|.+. |+.+-.+.. .+.+.+.++....+....-+....+...+..+.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-------~i~~~~idi~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~l~~ 68 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH-------GIEYEFIDYLKEPPTKEELKELLAKLGLGVEDLFNTRGTPYRKLGL 68 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc-------CCCcEEEeeccCCCCHHHHHHHHHhcCCCHHHHHhcCCchHHHcCC
Confidence 356688899999987766653 555444433 357788888888774332222233344444444
No 208
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=90.85 E-value=0.83 Score=27.99 Aligned_cols=61 Identities=7% Similarity=0.116 Sum_probs=37.8
Q ss_pred EeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeC--C--CHHHHHHHHHhcCCCC-ceeeCCcHHHHHHcCC
Q 044272 37 SHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSC--D--DVKSHNEWIKDIEAYT-PIIADPNREIIKQLNM 105 (133)
Q Consensus 37 f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~--d--~~~~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~ 105 (133)
+|...+|+.|++...-|.+. |+.+-.+.. + +.+.+.++....+.+. .++. ..+...+.++.
T Consensus 3 iY~~~~C~~c~ka~~~L~~~-------~i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~~-~~~~~~~~l~~ 68 (111)
T cd03036 3 FYEYPKCSTCRKAKKWLDEH-------GVDYTAIDIVEEPPSKEELKKWLEKSGLPLKKFFN-TSGKSYRELGL 68 (111)
T ss_pred EEECCCCHHHHHHHHHHHHc-------CCceEEecccCCcccHHHHHHHHHHcCCCHHHHHh-cCCchHHhCCc
Confidence 45578899999988777653 555444443 3 4677888888887654 2222 33344444444
No 209
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=90.19 E-value=1.5 Score=34.48 Aligned_cols=39 Identities=8% Similarity=-0.139 Sum_probs=25.4
Q ss_pred CeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEe
Q 044272 31 NWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLS 71 (133)
Q Consensus 31 ~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is 71 (133)
+++-+-.|.+.+||.|+.....++++..... ++..-.|-
T Consensus 476 ~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~--~i~~~~i~ 514 (555)
T TIGR03143 476 KPVNIKIGVSLSCTLCPDVVLAAQRIASLNP--NVEAEMID 514 (555)
T ss_pred CCeEEEEEECCCCCCcHHHHHHHHHHHHhCC--CceEEEEE
Confidence 4566666668899999987777776654432 45544443
No 210
>PTZ00062 glutaredoxin; Provisional
Probab=89.94 E-value=1.5 Score=30.09 Aligned_cols=52 Identities=12% Similarity=0.118 Sum_probs=29.8
Q ss_pred cccccCCCeEEEEEe---eCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHH
Q 044272 24 LHDFIGDNWTIIFSH---PGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWI 82 (133)
Q Consensus 24 l~d~~~~~~~vl~f~---~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~ 82 (133)
+..+...++++|+-- ..++||.|++...-|.+. ++....+..+..+..++..
T Consensus 106 v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~-------~i~y~~~DI~~d~~~~~~l 160 (204)
T PTZ00062 106 IERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSS-------GVKYETYNIFEDPDLREEL 160 (204)
T ss_pred HHHHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHc-------CCCEEEEEcCCCHHHHHHH
Confidence 334445567777665 225799998877766653 5555555554333344433
No 211
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=89.66 E-value=1.2 Score=27.48 Aligned_cols=61 Identities=10% Similarity=0.096 Sum_probs=39.1
Q ss_pred EeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeC----CCHHHHHHHHHhcCCCC-ceeeCCcHHHHHHcCC
Q 044272 37 SHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSC----DDVKSHNEWIKDIEAYT-PIIADPNREIIKQLNM 105 (133)
Q Consensus 37 f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~----d~~~~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~ 105 (133)
+|....|+.|+....-|.+ .|+.+..+.. .+.+.+.++.+..+... .++. ..+...+.++.
T Consensus 3 iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~~~~~~~~el~~l~~~~~~~~~~lin-~~~~~~k~l~~ 68 (117)
T TIGR01617 3 VYGSPNCTTCKKARRWLEA-------NGIEYQFIDIGEDGPTREELLDILSLLEDGIDPLLN-TRGQSYRALNT 68 (117)
T ss_pred EEeCCCCHHHHHHHHHHHH-------cCCceEEEecCCChhhHHHHHHHHHHcCCCHHHhee-CCCcchhhCCc
Confidence 4557789999998877766 3566555553 24677888888888544 3333 34455555553
No 212
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=89.62 E-value=1.1 Score=29.82 Aligned_cols=42 Identities=10% Similarity=0.135 Sum_probs=37.2
Q ss_pred HHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCCC
Q 044272 48 TELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYT 89 (133)
Q Consensus 48 ~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~ 89 (133)
.-.+++.+..++++++|+.++.+|-.++..+..|+++.+.++
T Consensus 46 ~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l~v~f 87 (175)
T COG2179 46 DATPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKLGVPF 87 (175)
T ss_pred CCCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhcCCce
Confidence 346788888889999999999999999999999999999876
No 213
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=89.54 E-value=0.8 Score=30.86 Aligned_cols=25 Identities=8% Similarity=0.112 Sum_probs=18.8
Q ss_pred CCeEEEEEeeCCCCchhHHHHHHHHh
Q 044272 30 DNWTIIFSHPGDFTPVCTTELGKMAA 55 (133)
Q Consensus 30 ~~~~vl~f~~~~~c~~C~~~~~~l~~ 55 (133)
++..+++|+ -..||+|+...+.+.+
T Consensus 77 ~~~~i~~f~-D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 77 GKRVVYVFT-DPDCPYCRKLEKELKP 101 (197)
T ss_pred CCEEEEEEE-CCCCccHHHHHHHHhh
Confidence 345555554 6779999999999876
No 214
>TIGR00995 3a0901s06TIC22 chloroplast protein import component, Tic22 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein.
Probab=88.82 E-value=3.9 Score=29.30 Aligned_cols=90 Identities=16% Similarity=0.122 Sum_probs=52.0
Q ss_pred CCCCceEEecCCC-eeecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcC
Q 044272 8 DSVPNLQVQTNQG-NFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIE 86 (133)
Q Consensus 8 ~~~p~f~l~~~~G-~~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~ 86 (133)
+.+|-|++.|.+| .+-.++- .++...-+|+... ......+.++.....+.. .+++|+.||.+....+. ..+
T Consensus 80 ~~VPVFtItn~~G~pvl~s~~-~~~~~~gvf~s~q--edA~afL~~lk~~~p~l~-~~~kV~pvsL~~vYkl~----~e~ 151 (270)
T TIGR00995 80 AGTSVFTVSNAQNEFVLASDN-DGEKSIGLLCFRQ--EDAEAFLAQLRKRKPEVG-SQAKVVPITLDQVYKLK----VEG 151 (270)
T ss_pred cCCceEEEEcCCCCeEEEECC-CCCceEEEEECCH--HHHHHHHHHHHhhCcccc-CCceEEEEEHHHHHHHh----hcC
Confidence 3679999999999 5444432 2333444443211 224455566655544443 46999999998766552 233
Q ss_pred CCCceeeCCcHHHHHHcCCC
Q 044272 87 AYTPIIADPNREIIKQLNMV 106 (133)
Q Consensus 87 ~~~~~~~d~~~~~~~~~~~~ 106 (133)
..|.++.|+. ++..+.++.
T Consensus 152 l~F~fiP~~~-qV~~A~~ll 170 (270)
T TIGR00995 152 IGFRFLPDPA-QIKNALELP 170 (270)
T ss_pred ccEEEeCCHH-HHHHHHHHH
Confidence 6668887744 444444443
No 215
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=88.78 E-value=2.9 Score=23.57 Aligned_cols=21 Identities=14% Similarity=0.213 Sum_probs=15.8
Q ss_pred CCCCchhHHHHHHHHhhhhHH
Q 044272 40 GDFTPVCTTELGKMAAYVPEF 60 (133)
Q Consensus 40 ~~~c~~C~~~~~~l~~~~~~~ 60 (133)
+..||.|......+.+..+.+
T Consensus 7 ~~~C~~C~~~~~~~~~~~~~~ 27 (76)
T PF13192_consen 7 SPGCPYCPELVQLLKEAAEEL 27 (76)
T ss_dssp CSSCTTHHHHHHHHHHHHHHT
T ss_pred CCCCCCcHHHHHHHHHHHHhc
Confidence 666999998777777765554
No 216
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=88.45 E-value=0.25 Score=35.87 Aligned_cols=33 Identities=6% Similarity=-0.073 Sum_probs=25.6
Q ss_pred EEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCce
Q 044272 33 TIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVK 66 (133)
Q Consensus 33 ~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~ 66 (133)
-++.|| +.||.+|++.-|-..+.-.++++-|.-
T Consensus 46 W~VdFY-APWC~HCKkLePiWdeVG~elkdig~P 78 (468)
T KOG4277|consen 46 WFVDFY-APWCAHCKKLEPIWDEVGHELKDIGLP 78 (468)
T ss_pred EEEEee-chhhhhcccccchhHHhCcchhhcCCc
Confidence 345555 999999999999998887777766543
No 217
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=88.36 E-value=3.2 Score=27.27 Aligned_cols=73 Identities=15% Similarity=0.232 Sum_probs=49.5
Q ss_pred EecCCCeeecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCC---HHHHHHHHHhc-----C
Q 044272 15 VQTNQGNFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDD---VKSHNEWIKDI-----E 86 (133)
Q Consensus 15 l~~~~G~~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~---~~~~~~~~~~~-----~ 86 (133)
+-|.||+++.||. .|+..- . .-..| .-+...+++..+.++|-+++-+|.=+ ....++|++.. +
T Consensus 3 vsDIDGTiT~SD~-~G~i~~-~-~G~d~------~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L~~~~q~~~~ 73 (157)
T PF08235_consen 3 VSDIDGTITKSDV-LGHILP-I-LGKDW------THPGAAELYRKIADNGYKILYLTARPIGQANRTRSWLAQHQQQGHN 73 (157)
T ss_pred EEeccCCcCccch-hhhhhh-c-cCchh------hhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHHHHHHhCCcc
Confidence 4578999999997 555322 2 21222 23456667788888999999999744 45667888887 6
Q ss_pred CCC-ceeeCCc
Q 044272 87 AYT-PIIADPN 96 (133)
Q Consensus 87 ~~~-~~~~d~~ 96 (133)
.+. |++..++
T Consensus 74 lP~Gpv~~sP~ 84 (157)
T PF08235_consen 74 LPDGPVLLSPD 84 (157)
T ss_pred CCCCCEEECCc
Confidence 665 6666644
No 218
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=88.35 E-value=0.87 Score=31.02 Aligned_cols=45 Identities=9% Similarity=-0.011 Sum_probs=27.8
Q ss_pred eecccccCCCeEEEEEeeCCCCchhHHHHHHH---HhhhhHHHHcCceEE
Q 044272 22 FKLHDFIGDNWTIIFSHPGDFTPVCTTELGKM---AAYVPEFDKREVKLL 68 (133)
Q Consensus 22 ~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l---~~~~~~~~~~~v~vv 68 (133)
.++..-..+++.|+.||.-. ||+|...-+.+ ..+.+.+. .++.++
T Consensus 29 ~~~~~p~~~~~~VvEffdy~-CphC~~~~~~l~~~~~~~~~~~-~~v~~~ 76 (207)
T PRK10954 29 TTLDKPVAGEPQVLEFFSFY-CPHCYQFEEVYHVSDNVKKKLP-EGTKMT 76 (207)
T ss_pred EEecCcCCCCCeEEEEeCCC-CccHHHhcccccchHHHHHhCC-CCCeEE
Confidence 34444336677788887555 99999987755 44444443 345544
No 219
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=87.08 E-value=1.5 Score=30.05 Aligned_cols=37 Identities=11% Similarity=0.159 Sum_probs=24.9
Q ss_pred EEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCC
Q 044272 34 IIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCD 73 (133)
Q Consensus 34 vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d 73 (133)
||-.|.+..|+-|+.--.-|.++.++ .+|..++..+|
T Consensus 1 vVELFTSQGCsSCPpAD~~L~~l~~~---~~Vi~LafHVD 37 (202)
T PF06764_consen 1 VVELFTSQGCSSCPPADRLLSELAAR---PDVIALAFHVD 37 (202)
T ss_dssp EEEEEE-TT-TT-HHHHHHHHHHHHH---TSSEEEEEE-S
T ss_pred CeeEecCCCCCCCcHHHHHHHHhhcC---CCEEEEEecCC
Confidence 46667788999999988888887665 36777777765
No 220
>PRK12559 transcriptional regulator Spx; Provisional
Probab=86.57 E-value=1.6 Score=27.64 Aligned_cols=64 Identities=9% Similarity=0.074 Sum_probs=39.8
Q ss_pred EEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeC----CCHHHHHHHHHhcCCCCceeeCCcHHHHHHcCCC
Q 044272 36 FSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSC----DDVKSHNEWIKDIEAYTPIIADPNREIIKQLNMV 106 (133)
Q Consensus 36 ~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~----d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 106 (133)
.+|...+|+.|++...-|.+ .|+.+-.+.. -+.+.+.+|.+..+....-+....+...+.++..
T Consensus 3 ~iY~~~~C~~crkA~~~L~~-------~gi~~~~~di~~~~~s~~el~~~l~~~~~g~~~lin~~~~~~k~l~~~ 70 (131)
T PRK12559 3 VLYTTASCASCRKAKAWLEE-------NQIDYTEKNIVSNSMTVDELKSILRLTEEGATEIISTRSKTFQDLNIN 70 (131)
T ss_pred EEEeCCCChHHHHHHHHHHH-------cCCCeEEEEeeCCcCCHHHHHHHHHHcCCCHHHHHhcCcHHHHhCCCC
Confidence 45667889999997766654 3555444442 3678889999886544422223455556666553
No 221
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=85.12 E-value=4.6 Score=24.49 Aligned_cols=61 Identities=10% Similarity=0.039 Sum_probs=38.0
Q ss_pred EEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEe--CC--CHHHHHHHHHhcCCCCceeeCCcHHHHHHcCC
Q 044272 36 FSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLS--CD--DVKSHNEWIKDIEAYTPIIADPNREIIKQLNM 105 (133)
Q Consensus 36 ~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is--~d--~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 105 (133)
.+|..++|+.|++...-|.+. |+.+-.+. -+ +.+.+.++....|. ..++. ..+...+.++.
T Consensus 2 ~iy~~~~C~~crka~~~L~~~-------~i~~~~~di~~~p~s~~eL~~~l~~~g~-~~li~-~~~~~yk~l~l 66 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR-------GVAYTFHDYRKDGLDAATLERWLAKVGW-ETLLN-KRGTTWRKLDD 66 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc-------CCCeEEEecccCCCCHHHHHHHHHHhCh-HHHHc-cCchHHHhCCh
Confidence 356688899999987777653 55544443 33 68889999998772 22222 34445555544
No 222
>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]
Probab=84.55 E-value=3.5 Score=33.18 Aligned_cols=75 Identities=19% Similarity=0.254 Sum_probs=45.0
Q ss_pred ecCCCeeecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeC---CCHHHHHHHHH---hcCCCC
Q 044272 16 QTNQGNFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSC---DDVKSHNEWIK---DIEAYT 89 (133)
Q Consensus 16 ~~~~G~~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~---d~~~~~~~~~~---~~~~~~ 89 (133)
-|++|+|+-+|. -|+ ++=+.-..|.. ..+++++.++++.|-+++-+|. .-.+..+.|+. ..|...
T Consensus 535 SDIDGTITKSDv-LGh--~lp~iGkDWTh------~GVAkLyt~Ik~NGYk~lyLSARaIgQA~~TR~yL~nv~QdG~~L 605 (738)
T KOG2116|consen 535 SDIDGTITKSDV-LGH--VLPMIGKDWTH------TGVAKLYTKIKENGYKILYLSARAIGQADSTRQYLKNVEQDGKKL 605 (738)
T ss_pred ecCCCceEhhhh-hhh--hhhhhcCcchh------hhHHHHHHHHHhCCeeEEEEehhhhhhhHHHHHHHHHHhhcCccC
Confidence 367788888776 344 22233355554 3467778888888999988885 22333444444 333322
Q ss_pred ---ceeeCCcHHH
Q 044272 90 ---PIIADPNREI 99 (133)
Q Consensus 90 ---~~~~d~~~~~ 99 (133)
|++..+++.+
T Consensus 606 PdGPViLSPd~lf 618 (738)
T KOG2116|consen 606 PDGPVILSPDSLF 618 (738)
T ss_pred CCCCEEeCCCcch
Confidence 7777766543
No 223
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=84.26 E-value=2.9 Score=31.74 Aligned_cols=31 Identities=19% Similarity=0.271 Sum_probs=21.7
Q ss_pred EeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCC
Q 044272 37 SHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDD 74 (133)
Q Consensus 37 f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~ 74 (133)
.|..+|||.|.+...-|.+. |+..--|..|.
T Consensus 6 vys~~~Cp~C~~aK~~L~~~-------gi~~~~idi~~ 36 (410)
T PRK12759 6 IYTKTNCPFCDLAKSWFGAN-------DIPFTQISLDD 36 (410)
T ss_pred EEeCCCCHHHHHHHHHHHHC-------CCCeEEEECCC
Confidence 34588999999887777663 66655565553
No 224
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=83.87 E-value=6.6 Score=24.90 Aligned_cols=61 Identities=10% Similarity=0.063 Sum_probs=39.1
Q ss_pred EeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeC--C--CHHHHHHHHHhcCCCC-ceeeCCcHHHHHHcCC
Q 044272 37 SHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSC--D--DVKSHNEWIKDIEAYT-PIIADPNREIIKQLNM 105 (133)
Q Consensus 37 f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~--d--~~~~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~ 105 (133)
+|....|+.|+....-|.+ .|+.+-.+.. + +.+.+.+|....+..+ .++. ..+...+.++.
T Consensus 4 iY~~~~C~~crkA~~~L~~-------~~i~~~~~d~~~~~~s~~eL~~~l~~~~~~~~~lin-~~~~~~k~L~~ 69 (132)
T PRK13344 4 IYTISSCTSCKKAKTWLNA-------HQLSYKEQNLGKEPLTKEEILAILTKTENGIESIVS-SKNRYAKALDC 69 (132)
T ss_pred EEeCCCCHHHHHHHHHHHH-------cCCCeEEEECCCCCCCHHHHHHHHHHhCCCHHHhhc-cCcHHHHhCCc
Confidence 4557789999996654443 4666555543 3 5788999999987554 3333 45555565554
No 225
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=83.53 E-value=3.1 Score=28.41 Aligned_cols=51 Identities=14% Similarity=0.231 Sum_probs=38.5
Q ss_pred EEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEe-CCCHHHHHHHHHhcCCCC
Q 044272 33 TIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLS-CDDVKSHNEWIKDIEAYT 89 (133)
Q Consensus 33 ~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is-~d~~~~~~~~~~~~~~~~ 89 (133)
.+.+|.- ..|+.|...+..+.. .+..+.|..|. ..+.+.++.|+..++.+.
T Consensus 111 rlalFvk-d~C~~C~~~~~~l~a-----~~~~~Diylvgs~~dD~~Ir~WA~~~~Idp 162 (200)
T TIGR03759 111 RLALFVK-DDCVACDARVQRLLA-----DNAPLDLYLVGSQGDDERIRQWANRHQIDP 162 (200)
T ss_pred eEEEEeC-CCChHHHHHHHHHhc-----CCCceeEEEecCCCCHHHHHHHHHHcCCCH
Confidence 4455554 779999999888854 23457776666 457899999999999987
No 226
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=82.82 E-value=2.4 Score=30.07 Aligned_cols=40 Identities=13% Similarity=0.113 Sum_probs=28.3
Q ss_pred eecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHH
Q 044272 22 FKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFD 61 (133)
Q Consensus 22 ~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~ 61 (133)
++-.|+..+.+..++|....|||.|-.+.=.|.....+|.
T Consensus 49 vsn~d~~~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfG 88 (249)
T PF06053_consen 49 VSNQDLAPNGKPEVIFIGWEGCPYCAAESWALYIALSRFG 88 (249)
T ss_pred ecCcccCCCCeeEEEEEecccCccchhhHHHHHHHHHhcC
Confidence 3444554444566777778899999999887777666665
No 227
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=82.82 E-value=3.8 Score=22.46 Aligned_cols=52 Identities=12% Similarity=-0.028 Sum_probs=27.6
Q ss_pred EeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCCC-ceeeCC
Q 044272 37 SHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYT-PIIADP 95 (133)
Q Consensus 37 f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~-~~~~d~ 95 (133)
+|...+||.|++..--|.+.-- ..+++-+.... ...++.+.+.... |++.+.
T Consensus 3 ly~~~~~p~~~rv~~~L~~~gl-----~~e~~~v~~~~--~~~~~~~~np~~~vP~L~~~ 55 (71)
T cd03060 3 LYSFRRCPYAMRARMALLLAGI-----TVELREVELKN--KPAEMLAASPKGTVPVLVLG 55 (71)
T ss_pred EEecCCCcHHHHHHHHHHHcCC-----CcEEEEeCCCC--CCHHHHHHCCCCCCCEEEEC
Confidence 3456789999988777765422 23444444432 1134444333222 776553
No 228
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=82.45 E-value=5.8 Score=26.13 Aligned_cols=41 Identities=12% Similarity=0.074 Sum_probs=28.0
Q ss_pred EEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCH
Q 044272 35 IFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDV 75 (133)
Q Consensus 35 l~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~ 75 (133)
|.||+..-||.|-...+.|.++.+.+.+-.+....++....
T Consensus 2 i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~~~ 42 (193)
T PF01323_consen 2 IEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLRPD 42 (193)
T ss_dssp EEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSSTH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccccccc
Confidence 34444666999999999999998888433344555554443
No 229
>PHA03075 glutaredoxin-like protein; Provisional
Probab=80.37 E-value=2.1 Score=26.59 Aligned_cols=38 Identities=21% Similarity=0.323 Sum_probs=26.1
Q ss_pred eEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEE
Q 044272 32 WTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGL 70 (133)
Q Consensus 32 ~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~i 70 (133)
.+++.|- -+.|++|.....-|.++.++|+=.-+.+++.
T Consensus 3 ~tLILfG-KP~C~vCe~~s~~l~~ledeY~ilrVNIlSf 40 (123)
T PHA03075 3 KTLILFG-KPLCSVCESISEALKELEDEYDILRVNILSF 40 (123)
T ss_pred ceEEEeC-CcccHHHHHHHHHHHHhhccccEEEEEeeee
Confidence 4555654 7889999999888888777765323444444
No 230
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=77.41 E-value=7.7 Score=28.76 Aligned_cols=90 Identities=12% Similarity=0.094 Sum_probs=53.5
Q ss_pred CCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCC-----HHHHHHHHHhcCCCC---ceeeCCcHHHH
Q 044272 29 GDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDD-----VKSHNEWIKDIEAYT---PIIADPNREII 100 (133)
Q Consensus 29 ~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~-----~~~~~~~~~~~~~~~---~~~~d~~~~~~ 100 (133)
.+++.|+.|. +..-..=++. +.++...|++.|..|+....|+ .+.+..|+++.|.+. .--+|+...+.
T Consensus 136 ~~~p~Vil~v-GVNG~GKTTT---IaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVaf 211 (340)
T COG0552 136 EKKPFVILFV-GVNGVGKTTT---IAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAF 211 (340)
T ss_pred CCCcEEEEEE-ecCCCchHhH---HHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHH
Confidence 3467777776 4333333344 4445556777899999899887 577888999988765 33344444333
Q ss_pred HHcCCCCCCCCCCCCCCccceeEEEECCCCcc
Q 044272 101 KQLNMVDPDEKDSSGKQLPSRALHIVGPDHQV 132 (133)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i 132 (133)
+...--. -..-..+|+|.-||+
T Consensus 212 DAi~~Ak----------ar~~DvvliDTAGRL 233 (340)
T COG0552 212 DAIQAAK----------ARGIDVVLIDTAGRL 233 (340)
T ss_pred HHHHHHH----------HcCCCEEEEeCcccc
Confidence 3321110 122246777777765
No 231
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=76.70 E-value=13 Score=22.60 Aligned_cols=48 Identities=19% Similarity=0.242 Sum_probs=24.6
Q ss_pred CCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCC---CHHHHHHHHHhc
Q 044272 29 GDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCD---DVKSHNEWIKDI 85 (133)
Q Consensus 29 ~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d---~~~~~~~~~~~~ 85 (133)
..+++|++ .-++||+|.. +++|-.- .++....+-.| ...+++++..+.
T Consensus 12 ~~~~VVif--SKs~C~~c~~-~k~ll~~------~~v~~~vvELD~~~~g~eiq~~l~~~ 62 (104)
T KOG1752|consen 12 SENPVVIF--SKSSCPYCHR-AKELLSD------LGVNPKVVELDEDEDGSEIQKALKKL 62 (104)
T ss_pred hcCCEEEE--ECCcCchHHH-HHHHHHh------CCCCCEEEEccCCCCcHHHHHHHHHh
Confidence 33445443 4688999999 4443321 34554444443 233444554433
No 232
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=75.29 E-value=9.2 Score=26.49 Aligned_cols=30 Identities=10% Similarity=0.081 Sum_probs=21.3
Q ss_pred CeEEEEEeeCCCCchhHHHHHHHHhhhhHHH
Q 044272 31 NWTIIFSHPGDFTPVCTTELGKMAAYVPEFD 61 (133)
Q Consensus 31 ~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~ 61 (133)
..+++.|+ ---||+|....+.+.+.+....
T Consensus 85 ~v~v~~f~-d~~Cp~C~~~~~~l~~~~i~~~ 114 (244)
T COG1651 85 PVTVVEFF-DYTCPYCKEAFPELKKKYIDDG 114 (244)
T ss_pred CceEEEEe-cCcCccHHHHHHHHHHHhhhcC
Confidence 44555555 5569999999999988655544
No 233
>PF04278 Tic22: Tic22-like family; InterPro: IPR007378 Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accompished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex loacted at the inner membrane []. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. This entry represents Tic22, a core member of the Tic complex. It is believed to act as a link between both protein complexes, contacting the translocated protein in the intermembrane space after transport through the Toc complex, and directing it to the Tic complex [].; PDB: 4EV1_A.
Probab=74.97 E-value=6.6 Score=28.24 Aligned_cols=84 Identities=18% Similarity=0.183 Sum_probs=38.8
Q ss_pred CCCceEEecCCC-eeeccccc-CCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHH--Hh
Q 044272 9 SVPNLQVQTNQG-NFKLHDFI-GDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWI--KD 84 (133)
Q Consensus 9 ~~p~f~l~~~~G-~~~l~d~~-~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~--~~ 84 (133)
.+|-|.++|.+| .+-.++-. +++.+.++|+ + -.-....+.++.....+. ..+++|..|+.+....+.... +.
T Consensus 74 ~VPVF~itn~~G~p~l~~~~~~~~~~v~~~F~-s--~~dA~~~L~~lk~~~p~~-~~~~kV~pvsL~~vY~l~~~~~~k~ 149 (274)
T PF04278_consen 74 GVPVFTITNSQGEPVLVSGPDQGGKSVGLFFF-S--QQDAEAFLAQLKKSNPEL-ASGAKVVPVSLGKVYQLAQENKKKP 149 (274)
T ss_dssp TSEEEEEE-TT--B-----TTS--SEEEEEES----HHHHHHHHHHHHH-SSHH-HTT-EEEEEEHHHHHHHHHHTTT-T
T ss_pred CceEEEEECCCCCEEEeccCCCCCceEEEEEe-c--HHHHHHHHHHHhhhCccc-cCceEEEEecHHHHHHHHHHhhcCC
Confidence 578999999999 54443321 2455555554 2 123334444444443333 457999999998666553321 22
Q ss_pred cCCCCceeeCCc
Q 044272 85 IEAYTPIIADPN 96 (133)
Q Consensus 85 ~~~~~~~~~d~~ 96 (133)
.+..|.++.|..
T Consensus 150 ~~~~F~~vP~~~ 161 (274)
T PF04278_consen 150 EGLQFRFVPDPK 161 (274)
T ss_dssp T-EEEEEE--HH
T ss_pred cCceEEEcCCHH
Confidence 222336776644
No 234
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=74.92 E-value=14 Score=22.57 Aligned_cols=47 Identities=11% Similarity=0.152 Sum_probs=31.0
Q ss_pred eeecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeC
Q 044272 21 NFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSC 72 (133)
Q Consensus 21 ~~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~ 72 (133)
+-.+++|.....-++-|+. |..|. -..+....+++.+.|+.+|.+|+
T Consensus 27 ~g~F~~y~~~~~elvgf~~---CgGCp--g~~~~~~~~~l~~~~~d~IHlss 73 (107)
T PF08821_consen 27 KGAFARYDDEDVELVGFFT---CGGCP--GRKLVRRIKKLKKNGADVIHLSS 73 (107)
T ss_pred cCccccCCCCCeEEEEEee---CCCCC--hhHHHHHHHHHHHCCCCEEEEcC
Confidence 3456666222456666664 44444 66677777778888999999985
No 235
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=74.59 E-value=3.2 Score=28.88 Aligned_cols=53 Identities=9% Similarity=0.083 Sum_probs=36.3
Q ss_pred CCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCC-HHHHHHHHHh
Q 044272 29 GDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDD-VKSHNEWIKD 84 (133)
Q Consensus 29 ~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~-~~~~~~~~~~ 84 (133)
+++..++.|| +.||..|.....-+..+.+.+ .+++++.+..+. ++....++-+
T Consensus 16 ~~~~~~~~f~-a~wa~~~~q~~~v~~~~~~~~--~~~~~~k~~a~~~~eis~~~~v~ 69 (227)
T KOG0911|consen 16 KGKLLVLHFW-AIWAVVQKQMDQVFDHLAEYF--KNAQFLKLEAEEFPEISNLIAVE 69 (227)
T ss_pred ccchhhhhhh-hhhhhhhhhHHHHHHHHHHhh--hhheeeeehhhhhhHHHHHHHHh
Confidence 5566667766 999999999888888876666 467777776653 3444444443
No 236
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=74.01 E-value=11 Score=26.95 Aligned_cols=40 Identities=13% Similarity=0.156 Sum_probs=28.9
Q ss_pred eEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCC
Q 044272 32 WTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCD 73 (133)
Q Consensus 32 ~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d 73 (133)
..||++++-..++.|...-..|..+..+|. .++++-|..+
T Consensus 147 ~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp--~vKFvkI~a~ 186 (265)
T PF02114_consen 147 TWVVVHIYEPGFPRCEIMNSCLECLARKYP--EVKFVKIRAS 186 (265)
T ss_dssp -EEEEEEE-TTSCCHHHHHHHHHHHHHH-T--TSEEEEEEEC
T ss_pred cEEEEEEEeCCCchHHHHHHHHHHHHHhCC--ceEEEEEehh
Confidence 344444447779999999999999998887 5888877654
No 237
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=73.80 E-value=6.9 Score=24.35 Aligned_cols=64 Identities=8% Similarity=0.120 Sum_probs=42.1
Q ss_pred EEEeeCCCCchhHHHHHHHHhhhhHHHHcCceE--EEEeC--CCHHHHHHHHHhcCCCCceeeCCcHHHHHHcCC
Q 044272 35 IFSHPGDFTPVCTTELGKMAAYVPEFDKREVKL--LGLSC--DDVKSHNEWIKDIEAYTPIIADPNREIIKQLNM 105 (133)
Q Consensus 35 l~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~v--v~is~--d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 105 (133)
+.+|...-|.-|+....-|.+ .|+.. +-+.- -+.+.+.+|.+..+..+.-+....+...+.++.
T Consensus 3 itiy~~p~C~t~rka~~~L~~-------~gi~~~~~~y~~~~~s~~eL~~~l~~~g~~~~~li~t~~~~~r~L~~ 70 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEE-------HGIEYTFIDYLKTPPSREELKKILSKLGDGVEELINTRGTTYRELNL 70 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------cCCCcEEEEeecCCCCHHHHHHHHHHcCccHHHHHHhccchHHHcCC
Confidence 445556779999887766654 46554 33333 368899999999997663333456666777774
No 238
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=73.60 E-value=2.3 Score=29.63 Aligned_cols=36 Identities=11% Similarity=0.163 Sum_probs=28.6
Q ss_pred eEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceE
Q 044272 32 WTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKL 67 (133)
Q Consensus 32 ~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~v 67 (133)
.+-|+-|++.|.|-|....|-+.++..+|...++++
T Consensus 145 t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkF 180 (265)
T KOG0914|consen 145 TYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKF 180 (265)
T ss_pred eEEEEEEEeecChhhcccccccHHHHHHhCCCCCcc
Confidence 455555559999999999999999998887665553
No 239
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=73.29 E-value=0.71 Score=32.26 Aligned_cols=40 Identities=18% Similarity=0.444 Sum_probs=27.3
Q ss_pred ccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCce
Q 044272 25 HDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVK 66 (133)
Q Consensus 25 ~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~ 66 (133)
.++..|.+.+.+ + +.|||-|....+.+.....--.+-+++
T Consensus 35 ~~~l~gewmi~~-~-ap~~psc~~~~~~~~~~a~~s~dL~v~ 74 (248)
T KOG0913|consen 35 KELLTGEWMIEF-G-APWCPSCSDLIPHLENFATVSLDLGVK 74 (248)
T ss_pred hhhhchHHHHHh-c-CCCCccccchHHHHhccCCccCCCcee
Confidence 344355554443 3 899999999999999876555555555
No 240
>PRK13738 conjugal transfer pilus assembly protein TraW; Provisional
Probab=72.84 E-value=16 Score=25.22 Aligned_cols=44 Identities=14% Similarity=0.046 Sum_probs=31.6
Q ss_pred CceEEEEeCCCHHHHHHHHHhcCCCCceeeCCcHHHHHHcCCCCCCCCCCCCCCccceeEEE
Q 044272 64 EVKLLGLSCDDVKSHNEWIKDIEAYTPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHI 125 (133)
Q Consensus 64 ~v~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l 125 (133)
.+++|.+.-+..+..+++ .-+++.|..+.+.+.||+ .++|+.+-
T Consensus 146 ~~k~ILv~Gs~~~~~~~l------~~~vYfdQ~G~Lt~rF~I------------~~VPAvV~ 189 (209)
T PRK13738 146 ESKIILVQGSIPEMSKAL------DSRIYFDQNGVLCQRFGI------------DQVPARVS 189 (209)
T ss_pred CceEEEECCCHHHHHHHh------CCceEEcCcchHHHhcCC------------eeeceEEE
Confidence 577777776544433332 458999999999999999 57888764
No 241
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=71.56 E-value=16 Score=27.94 Aligned_cols=72 Identities=18% Similarity=0.239 Sum_probs=44.3
Q ss_pred hHHHHHHHHhhhhHHHHcCceEEEEeCCC-----HHHHHHHHHhcCCCCceeeCCcHHHHHHcCCCCCCCCCCCCCCccc
Q 044272 46 CTTELGKMAAYVPEFDKREVKLLGLSCDD-----VKSHNEWIKDIEAYTPIIADPNREIIKQLNMVDPDEKDSSGKQLPS 120 (133)
Q Consensus 46 C~~~~~~l~~~~~~~~~~~v~vv~is~d~-----~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (133)
=+..+..|+..+. +....-+|-.|+.|+ .+.++.|++.++.+..++.++. ++....... ..
T Consensus 216 KTTTlAKLAar~~-~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~-el~~ai~~l------------~~ 281 (407)
T COG1419 216 KTTTLAKLAARYV-MLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPK-ELAEAIEAL------------RD 281 (407)
T ss_pred HHHHHHHHHHHHH-hhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHH-HHHHHHHHh------------hc
Confidence 3445666666554 112334455677775 7889999999999887776644 454443332 22
Q ss_pred eeEEEECCCCc
Q 044272 121 RALHIVGPDHQ 131 (133)
Q Consensus 121 p~~~lid~~G~ 131 (133)
-..+|||.-|+
T Consensus 282 ~d~ILVDTaGr 292 (407)
T COG1419 282 CDVILVDTAGR 292 (407)
T ss_pred CCEEEEeCCCC
Confidence 26677777664
No 242
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=71.39 E-value=6.9 Score=27.56 Aligned_cols=36 Identities=14% Similarity=0.172 Sum_probs=26.4
Q ss_pred eEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeC
Q 044272 32 WTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSC 72 (133)
Q Consensus 32 ~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~ 72 (133)
+.||..|.+..|.-|..--..|.++.++ -.||++|.
T Consensus 42 ~~VVELfTSQGCsSCPPAd~~l~k~a~~-----~~vlALsy 77 (261)
T COG5429 42 LGVVELFTSQGCSSCPPADANLAKLADD-----PGVLALSY 77 (261)
T ss_pred ceEEEEeecCCcCCCChHHHHHHHhccC-----CCEEEEEE
Confidence 5677778788899999888888776432 33777774
No 243
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=70.51 E-value=15 Score=28.65 Aligned_cols=38 Identities=3% Similarity=-0.155 Sum_probs=25.3
Q ss_pred CeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEE
Q 044272 31 NWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGL 70 (133)
Q Consensus 31 ~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~i 70 (133)
+++-+..|.+..||+|+.....++++... +.++..-.|
T Consensus 116 ~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~--~~~i~~~~i 153 (517)
T PRK15317 116 GDFHFETYVSLSCHNCPDVVQALNLMAVL--NPNITHTMI 153 (517)
T ss_pred CCeEEEEEEcCCCCCcHHHHHHHHHHHHh--CCCceEEEE
Confidence 45655555588899999888888776543 224665444
No 244
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=69.40 E-value=13 Score=24.06 Aligned_cols=41 Identities=24% Similarity=0.178 Sum_probs=34.4
Q ss_pred HHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCCC
Q 044272 49 ELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYT 89 (133)
Q Consensus 49 ~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~ 89 (133)
....|.++..++++.|+.++.+.-++.+.+.+++++++...
T Consensus 51 l~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~ 91 (165)
T PF00875_consen 51 LLESLADLQESLRKLGIPLLVLRGDPEEVLPELAKEYGATA 91 (165)
T ss_dssp HHHHHHHHHHHHHHTTS-EEEEESSHHHHHHHHHHHHTESE
T ss_pred HHHHHHHHHHHHHhcCcceEEEecchHHHHHHHHHhcCcCe
Confidence 36778888899999999999999998999999999988654
No 245
>COG3054 Predicted transcriptional regulator [General function prediction only]
Probab=69.09 E-value=11 Score=24.82 Aligned_cols=115 Identities=13% Similarity=0.178 Sum_probs=59.5
Q ss_pred CCCCCCCCceEEecC-----CC-e-----eecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhh--hHHHHcCce-EEE
Q 044272 4 LTIGDSVPNLQVQTN-----QG-N-----FKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYV--PEFDKREVK-LLG 69 (133)
Q Consensus 4 l~~G~~~p~f~l~~~-----~G-~-----~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~--~~~~~~~v~-vv~ 69 (133)
++.|+++|...+.+. +| . ...+++ -||.-|+....+.- . .+.....|.+.. +.|....-+ ---
T Consensus 23 lq~~q~vp~VgV~~~GEl~l~~~~~~y~~W~SAqL-~GKvRV~~hiAGRt-s-aKE~Na~lieaIk~a~fp~~~YQTTTI 99 (184)
T COG3054 23 LQLGQRVPPVGVADRGELVLDKDQFSYKTWNSAQL-VGKVRVLQHIAGRT-S-AKEKNATLIEAIKSAKFPHDRYQTTTI 99 (184)
T ss_pred cccCCcCCCccccccceEEecCcceeecccchhhc-cchhhhhhhhhccc-c-hhhhchHHHHHHHhccCChHHceeeEE
Confidence 678999998877653 22 1 233444 56666666654441 1 222222222221 111111111 222
Q ss_pred EeCCCH-----HHHHHHHHhcCC--CC-ceeeCCcHHHHHHcCCCCCCCCCCCCCCccceeEEEECCCCcc
Q 044272 70 LSCDDV-----KSHNEWIKDIEA--YT-PIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQV 132 (133)
Q Consensus 70 is~d~~-----~~~~~~~~~~~~--~~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i 132 (133)
|+.|+. .-++.-++.... ++ .++.|.++....+|++.. -.-+++++|++|+|
T Consensus 100 iN~DDAi~GtgmFVkssae~~Kke~pwSq~vlD~~gvak~AWqL~e-----------~~SaivVlDk~G~V 159 (184)
T COG3054 100 INTDDAIPGTGMFVKSSAESNKKEYPWSQFVLDSNGVAKNAWQLKE-----------ESSAVVVLDKDGRV 159 (184)
T ss_pred eccCCccccccceeecchhhccccCCceeeEEccchhhhhhhcccc-----------ccceEEEEcCCCcE
Confidence 444431 112222222222 22 888999997777999853 34588999999987
No 246
>PF01106 NifU: NifU-like domain; InterPro: IPR001075 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the C-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal (IPR002871 from INTERPRO) and a C-terminal domain []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 2JNV_A 2Z51_A 1TH5_A 1VEH_A 1XHJ_A.
Probab=68.15 E-value=13 Score=20.61 Aligned_cols=32 Identities=19% Similarity=0.286 Sum_probs=19.3
Q ss_pred CCeeecccccCCCeEEEEEeeCCCCchhHHHHHHH
Q 044272 19 QGNFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKM 53 (133)
Q Consensus 19 ~G~~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l 53 (133)
.|.+.+-++ .+..+.+-+ .+. |..|......+
T Consensus 16 GGdv~lv~v-~~~~V~V~l-~Ga-C~gC~~s~~Tl 47 (68)
T PF01106_consen 16 GGDVELVDV-DDGVVYVRL-TGA-CSGCPSSDMTL 47 (68)
T ss_dssp TEEEEEEEE-ETTEEEEEE-ESS-CCSSCCHHHHH
T ss_pred CCcEEEEEe-cCCEEEEEE-EeC-CCCCCCHHHHH
Confidence 348999998 455555554 466 55565554444
No 247
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=67.22 E-value=15 Score=21.92 Aligned_cols=40 Identities=10% Similarity=0.121 Sum_probs=31.7
Q ss_pred HHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCC
Q 044272 48 TELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEA 87 (133)
Q Consensus 48 ~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~ 87 (133)
...+.+.+..+.++++|+.++.+|......+..+.+..+.
T Consensus 24 ~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~~~ 63 (139)
T cd01427 24 ELYPGVKEALKELKEKGIKLALATNKSRREVLELLEELGL 63 (139)
T ss_pred CcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHcCC
Confidence 4455666667777778899999999888888888888876
No 248
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=66.48 E-value=16 Score=27.29 Aligned_cols=57 Identities=7% Similarity=0.113 Sum_probs=39.6
Q ss_pred hHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCCCceeeCCcHHHHHH
Q 044272 46 CTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPIIADPNREIIKQ 102 (133)
Q Consensus 46 C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 102 (133)
|-.....+.+......+.+.+|++|+.-+.+...+|+++++.+.+-+.+.-.++.+.
T Consensus 14 ~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~~~~k~y~syEeLakd 70 (351)
T KOG2741|consen 14 AGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNIPNPKAYGSYEELAKD 70 (351)
T ss_pred hhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCCCCCccccCHHHHhcC
Confidence 455555565555555556899999998899999999999999654444434444443
No 249
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=65.43 E-value=7.9 Score=25.56 Aligned_cols=26 Identities=8% Similarity=0.092 Sum_probs=21.5
Q ss_pred EEEeeCCCCchhHHHHHHHHhhhhHH
Q 044272 35 IFSHPGDFTPVCTTELGKMAAYVPEF 60 (133)
Q Consensus 35 l~f~~~~~c~~C~~~~~~l~~~~~~~ 60 (133)
|.||.-..||.|-...+.|.++.+++
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~ 28 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEY 28 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHh
Confidence 45566777999999999999988887
No 250
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=65.02 E-value=23 Score=21.62 Aligned_cols=62 Identities=6% Similarity=-0.009 Sum_probs=37.2
Q ss_pred EeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEe--CC--CHHHHHHHHHhcCCCCceeeCCcHHHHHHcCC
Q 044272 37 SHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLS--CD--DVKSHNEWIKDIEAYTPIIADPNREIIKQLNM 105 (133)
Q Consensus 37 f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is--~d--~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 105 (133)
+|....|.-|++...-|.+ .|+.+..+. -+ +.+.+.++++..+....-+....+...+..+.
T Consensus 3 iy~~~~C~t~rkA~~~L~~-------~~i~~~~~di~~~~~t~~el~~~l~~~~~~~~~lin~~~~~y~~l~~ 68 (112)
T cd03034 3 IYHNPRCSKSRNALALLEE-------AGIEPEIVEYLKTPPTAAELRELLAKLGISPRDLLRTKEAPYKELGL 68 (112)
T ss_pred EEECCCCHHHHHHHHHHHH-------CCCCeEEEecccCCcCHHHHHHHHHHcCCCHHHHHhcCCchHHHcCC
Confidence 4446669999987665554 355544444 23 67889999999885442222234444455444
No 251
>TIGR02743 TraW type-F conjugative transfer system protein TraW. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=63.25 E-value=27 Score=23.99 Aligned_cols=44 Identities=16% Similarity=0.081 Sum_probs=30.5
Q ss_pred CceEEEEeCCCHHHHHHHHHhcCCCCceeeCCcHHHHHHcCCCCCCCCCCCCCCccceeEEE
Q 044272 64 EVKLLGLSCDDVKSHNEWIKDIEAYTPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHI 125 (133)
Q Consensus 64 ~v~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l 125 (133)
.+++|.+.-+ +.++ .++ ...+++.|..+.+.+.||+ .++|+.+-
T Consensus 148 ~~k~IL~~Gs-~~~l---~~~--l~~~vYfdQ~g~Lt~rF~I------------~~VPavV~ 191 (202)
T TIGR02743 148 NVKWILTGGS-VNEL---EKR--LDSRIYFDQHGKLTQKFGI------------KHVPARVS 191 (202)
T ss_pred CeEEEEeCCC-HHHH---HHH--hCCceEEcCCchHhhccCc------------eeeceEEE
Confidence 3677766644 3333 222 2458999999999999999 57888764
No 252
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=61.83 E-value=24 Score=19.02 Aligned_cols=19 Identities=11% Similarity=-0.188 Sum_probs=13.9
Q ss_pred eeCCCCchhHHHHHHHHhh
Q 044272 38 HPGDFTPVCTTELGKMAAY 56 (133)
Q Consensus 38 ~~~~~c~~C~~~~~~l~~~ 56 (133)
|....||.|.+..-.|.+.
T Consensus 4 y~~~~~~~~~~v~~~l~~~ 22 (73)
T cd03059 4 YSGPDDVYSHRVRIVLAEK 22 (73)
T ss_pred EECCCChhHHHHHHHHHHc
Confidence 4466799999987776654
No 253
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=61.56 E-value=17 Score=24.05 Aligned_cols=56 Identities=18% Similarity=0.238 Sum_probs=39.7
Q ss_pred HHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCCC-ceeeCC------c--HHHHHHcCC
Q 044272 50 LGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYT-PIIADP------N--REIIKQLNM 105 (133)
Q Consensus 50 ~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~-~~~~d~------~--~~~~~~~~~ 105 (133)
.+...+..+.+++.|+++..+|-|+.......++..|... .+.++. + ..+.+.+++
T Consensus 129 ~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lgi~~~~v~a~~~~kP~~k~~~~~i~~l~~ 193 (215)
T PF00702_consen 129 RPGAKEALQELKEAGIKVAILTGDNESTASAIAKQLGIFDSIVFARVIGKPEPKIFLRIIKELQV 193 (215)
T ss_dssp HTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTSCSEEEEESHETTTHHHHHHHHHHHHTC
T ss_pred hhhhhhhhhhhhccCcceeeeeccccccccccccccccccccccccccccccchhHHHHHHHHhc
Confidence 3445555666777899999999999999999999999854 233332 1 345566665
No 254
>COG0694 Thioredoxin-like proteins and domains [Posttranslational modification, protein turnover, chaperones]
Probab=60.90 E-value=34 Score=20.47 Aligned_cols=36 Identities=11% Similarity=0.232 Sum_probs=19.3
Q ss_pred CC-eeecccccCCCeEEEEEeeCCCCchhHHHHHHHHh
Q 044272 19 QG-NFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAA 55 (133)
Q Consensus 19 ~G-~~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~ 55 (133)
+| .+.+-++.+...+|..-|.+. |..|....-.|..
T Consensus 29 dGGdve~~~i~~~~g~V~l~l~Ga-C~gC~sS~~TLk~ 65 (93)
T COG0694 29 DGGDVELVGIDEEDGVVYLRLGGA-CSGCPSSTVTLKN 65 (93)
T ss_pred cCCeEEEEEEecCCCeEEEEeCCc-CCCCcccHHHHHH
Confidence 44 888888743122444445466 5555555444443
No 255
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=60.28 E-value=69 Score=23.98 Aligned_cols=64 Identities=14% Similarity=0.238 Sum_probs=40.5
Q ss_pred CCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCC-CCceeeCCc
Q 044272 29 GDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEA-YTPIIADPN 96 (133)
Q Consensus 29 ~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~-~~~~~~d~~ 96 (133)
++.++++.-...+-..--.....++.++ ...|..+|=|+.++.+...++.+-... +.|++.|-.
T Consensus 18 gdaPI~VQSMTnT~T~Dv~aTv~QI~~L----~~aG~dIVRvtv~~~e~A~A~~~Ik~~~~vPLVaDiH 82 (361)
T COG0821 18 GDAPIVVQSMTNTDTADVEATVAQIKAL----ERAGCDIVRVTVPDMEAAEALKEIKQRLNVPLVADIH 82 (361)
T ss_pred CCCceEEEeccCCCcccHHHHHHHHHHH----HHcCCCEEEEecCCHHHHHHHHHHHHhCCCCEEEEee
Confidence 4567877766555444444455555544 456999999999877766665443333 449999844
No 256
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=60.23 E-value=32 Score=20.95 Aligned_cols=30 Identities=13% Similarity=0.204 Sum_probs=20.2
Q ss_pred hhhHHHHcCceEEEEeCCCHHHHHHHHHhcCC
Q 044272 56 YVPEFDKREVKLLGLSCDDVKSHNEWIKDIEA 87 (133)
Q Consensus 56 ~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~ 87 (133)
..+..+++|+.+|+|+.+. .+.+++.+.+.
T Consensus 62 ~~~~a~~~g~~iI~IT~~~--~l~~~~~~~~~ 91 (119)
T cd05017 62 AVEQAKERGAKIVAITSGG--KLLEMAREHGV 91 (119)
T ss_pred HHHHHHHCCCEEEEEeCCc--hHHHHHHHcCC
Confidence 3334566789999999765 36667776653
No 257
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=58.13 E-value=12 Score=22.59 Aligned_cols=32 Identities=13% Similarity=0.244 Sum_probs=20.9
Q ss_pred EeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeC
Q 044272 37 SHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSC 72 (133)
Q Consensus 37 f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~ 72 (133)
||-+ .||.|......+.+.-. ...++++.+..
T Consensus 2 ~YDg-~C~lC~~~~~~l~~~d~---~~~l~~~~~~~ 33 (114)
T PF04134_consen 2 FYDG-DCPLCRREVRFLRRRDR---GGRLRFVDIQS 33 (114)
T ss_pred EECC-CCHhHHHHHHHHHhcCC---CCCEEEEECCC
Confidence 3434 59999999999987621 12466666633
No 258
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=56.75 E-value=44 Score=20.47 Aligned_cols=64 Identities=9% Similarity=0.111 Sum_probs=41.2
Q ss_pred EeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCCCceeeCCcHHHHHHcCC
Q 044272 37 SHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPIIADPNREIIKQLNM 105 (133)
Q Consensus 37 f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 105 (133)
|.-+. -+.++.. |.+..+++++.+..-+.|+.++.+.+.+..+-. ...++.-..-..+++.+|+
T Consensus 28 FlIGd-D~~S~~W---L~~~~~~L~~l~AvGlVVnV~t~~~l~~Lr~la-pgl~l~P~sgddLa~rL~l 91 (105)
T TIGR03765 28 FLIGD-DPASRQW---LQQNAAALKSLGAVGLVVNVETAAALQRLRALA-PGLPLLPVSGDDLAERLGL 91 (105)
T ss_pred EEEeC-CHHHHHH---HHHHHHHHHHCCCeEEEEecCCHHHHHHHHHHc-CCCcccCCCHHHHHHHhCC
Confidence 33355 4555444 444556667677777778899888887765553 1225555556689999999
No 259
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=56.73 E-value=39 Score=22.34 Aligned_cols=40 Identities=3% Similarity=-0.120 Sum_probs=29.7
Q ss_pred HHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCCC
Q 044272 50 LGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYT 89 (133)
Q Consensus 50 ~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~ 89 (133)
.+...++.+.++++|..++.+|......+..+++..+...
T Consensus 89 ~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg~~~ 128 (202)
T TIGR01490 89 YPEARDLIRWHKAEGHTIVLVSASLTILVKPLARILGIDN 128 (202)
T ss_pred cHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCcc
Confidence 4455555666677899998888877777788888877754
No 260
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=56.38 E-value=44 Score=20.41 Aligned_cols=61 Identities=7% Similarity=0.020 Sum_probs=37.9
Q ss_pred EeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEe--C--CCHHHHHHHHHhcCCCC--ceeeCCcHHHHHHcCC
Q 044272 37 SHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLS--C--DDVKSHNEWIKDIEAYT--PIIADPNREIIKQLNM 105 (133)
Q Consensus 37 f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is--~--d~~~~~~~~~~~~~~~~--~~~~d~~~~~~~~~~~ 105 (133)
+|....|+-|++...-|.+. |+.+..+. - =+.+.+.++++..+... .++ ...+...+..+.
T Consensus 3 iy~~~~C~t~rkA~~~L~~~-------~i~~~~~di~~~p~t~~el~~~l~~~g~~~~~~li-n~~~~~~~~l~~ 69 (114)
T TIGR00014 3 IYHNPRCSKSRNTLALLEDK-------GIEPEVVKYLKNPPTKSELEAIFAKLGLTVAREMI-RTKEALYKELGL 69 (114)
T ss_pred EEECCCCHHHHHHHHHHHHC-------CCCeEEEeccCCCcCHHHHHHHHHHcCCchHHHHH-hcCCcHHHHcCC
Confidence 45566699999877766653 55544454 2 36788999999887542 122 334445555544
No 261
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=56.31 E-value=21 Score=27.65 Aligned_cols=64 Identities=20% Similarity=0.274 Sum_probs=45.5
Q ss_pred CCCCCceEEecCCC-eeecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCC
Q 044272 7 GDSVPNLQVQTNQG-NFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCD 73 (133)
Q Consensus 7 G~~~p~f~l~~~~G-~~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d 73 (133)
++.+-.+.+.-.+| .++|.++.+...+||. .++ -.++...+.......+++.++||-||-|..+
T Consensus 273 ee~L~rL~v~l~~~~~v~l~~LRg~~RvvIv--AG~-~e~v~~al~~ae~~r~~L~~r~VlvVPv~~~ 337 (453)
T PLN03098 273 DETLSRLPVRLSTNRIVELVQLRDITRPVIL--AGT-KESVTLAMQKAERYRTELLKRGVLLIPVVWG 337 (453)
T ss_pred hhhhccceEeccCCCEEeHHHhcCcceEEEE--ECC-HHHHHHHHHHhHHHHHHHHHcCcEEEEEecC
Confidence 34444455554456 7999999433344443 355 4778888889999999999999999998875
No 262
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=56.28 E-value=30 Score=21.26 Aligned_cols=40 Identities=5% Similarity=0.089 Sum_probs=27.9
Q ss_pred HHHHHhhhhHHHHcCceEEEEeCCC--------HHHHHHHHHhcCCCC
Q 044272 50 LGKMAAYVPEFDKREVKLLGLSCDD--------VKSHNEWIKDIEAYT 89 (133)
Q Consensus 50 ~~~l~~~~~~~~~~~v~vv~is~d~--------~~~~~~~~~~~~~~~ 89 (133)
.+...+..+.+++.|+.++.+|..+ .+...+..++++..+
T Consensus 27 ~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~~ 74 (132)
T TIGR01662 27 YPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVPI 74 (132)
T ss_pred CCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCCE
Confidence 4555666667777788888888765 566777777777654
No 263
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=55.18 E-value=27 Score=22.04 Aligned_cols=38 Identities=5% Similarity=0.071 Sum_probs=28.5
Q ss_pred HHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCC
Q 044272 51 GKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAY 88 (133)
Q Consensus 51 ~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~ 88 (133)
+.+.++.+.++++|+.++.+|..+........++++..
T Consensus 80 ~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~ 117 (176)
T PF13419_consen 80 PGVRELLERLKAKGIPLVIVSNGSRERIERVLERLGLD 117 (176)
T ss_dssp TTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHG
T ss_pred hhhhhhhhhcccccceeEEeecCCcccccccccccccc
Confidence 34455566677778999999988888777778877766
No 264
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=55.10 E-value=56 Score=21.21 Aligned_cols=41 Identities=15% Similarity=0.095 Sum_probs=30.0
Q ss_pred EEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHH
Q 044272 33 TIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNE 80 (133)
Q Consensus 33 ~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~ 80 (133)
.=+.+|.+..|.=|......|.. +|+.|-.+..|+-+.+++
T Consensus 26 ~~~~vyksPnCGCC~~w~~~mk~-------~Gf~Vk~~~~~d~~alK~ 66 (149)
T COG3019 26 TEMVVYKSPNCGCCDEWAQHMKA-------NGFEVKVVETDDFLALKR 66 (149)
T ss_pred eeEEEEeCCCCccHHHHHHHHHh-------CCcEEEEeecCcHHHHHH
Confidence 33555668889999887776653 589988888887766654
No 265
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=54.54 E-value=32 Score=26.91 Aligned_cols=29 Identities=3% Similarity=-0.169 Sum_probs=19.8
Q ss_pred CeEEEEEeeCCCCchhHHHHHHHHhhhhH
Q 044272 31 NWTIIFSHPGDFTPVCTTELGKMAAYVPE 59 (133)
Q Consensus 31 ~~~vl~f~~~~~c~~C~~~~~~l~~~~~~ 59 (133)
+++-+..|.+..||+|+.....++++...
T Consensus 117 ~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~ 145 (515)
T TIGR03140 117 GPLHFETYVSLTCQNCPDVVQALNQMALL 145 (515)
T ss_pred CCeEEEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 45545445577799999887777766443
No 266
>PF15092 UPF0728: Uncharacterised protein family UPF0728
Probab=54.46 E-value=37 Score=19.99 Aligned_cols=46 Identities=9% Similarity=0.029 Sum_probs=35.0
Q ss_pred CeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHH
Q 044272 31 NWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVK 76 (133)
Q Consensus 31 ~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~ 76 (133)
..+.+.+-+..-|..-..-..+|.-+++-+++.|.+++..-.+++.
T Consensus 5 a~V~iryGPY~a~glv~hrt~RL~GLqa~L~~dGh~v~L~~~~d~n 50 (88)
T PF15092_consen 5 AYVTIRYGPYSACGLVEHRTFRLEGLQAVLAKDGHEVILEKIEDWN 50 (88)
T ss_pred cEEEEEecCchhhCeeeehHHHHHHHHHHHHhCCcEEEEEEecccc
Confidence 4556666666668886777888999999999999998888776443
No 267
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=54.39 E-value=20 Score=23.34 Aligned_cols=35 Identities=9% Similarity=0.068 Sum_probs=28.5
Q ss_pred hhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCCC
Q 044272 55 AYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYT 89 (133)
Q Consensus 55 ~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~ 89 (133)
++.+.+++.|+.++.||.+....+...++..+.+.
T Consensus 96 e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~~ 130 (192)
T PF12710_consen 96 ELIRELKDNGIKVVIVSGSPDEIIEPIAERLGIDD 130 (192)
T ss_dssp HHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTSSE
T ss_pred HHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCc
Confidence 55666677899999999998888888888888765
No 268
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=54.33 E-value=57 Score=21.12 Aligned_cols=64 Identities=13% Similarity=0.143 Sum_probs=41.3
Q ss_pred EeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCCCceeeCCcHHHHHHcCC
Q 044272 37 SHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPIIADPNREIIKQLNM 105 (133)
Q Consensus 37 f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 105 (133)
|.-+. -+.++..+ .+..+++++.+..=+.|+.++.+.+++..+-. ...++.-..-..+++.+++
T Consensus 66 FlVGd-D~~S~~WL---~~~~~~L~~l~AvGlVVNV~t~~~L~~Lr~la-pgl~l~P~sgddLA~rL~l 129 (142)
T PF11072_consen 66 FLVGD-DPLSRQWL---QQNAEELKQLGAVGLVVNVATEAALQRLRQLA-PGLPLLPVSGDDLARRLGL 129 (142)
T ss_pred EEEcC-CHHHHHHH---HHHHHHHHHCCCeEEEEecCCHHHHHHHHHHc-CCCeecCCCHHHHHHHhCC
Confidence 33355 45555554 44455666667776778999888887766553 1224544455689999999
No 269
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=53.55 E-value=42 Score=21.96 Aligned_cols=40 Identities=15% Similarity=0.150 Sum_probs=26.3
Q ss_pred HHHHHHHhhhhHHHHcCceEEEEeCCC-HHHHHHHHHhcCC
Q 044272 48 TELGKMAAYVPEFDKREVKLLGLSCDD-VKSHNEWIKDIEA 87 (133)
Q Consensus 48 ~~~~~l~~~~~~~~~~~v~vv~is~d~-~~~~~~~~~~~~~ 87 (133)
...+.+.+..+.+++.|..++.+|..+ ......+.+..+.
T Consensus 43 ~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~~gl 83 (170)
T TIGR01668 43 EAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKALGI 83 (170)
T ss_pred CcChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHcCC
Confidence 345666777777888888888888766 3444445555554
No 270
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=53.54 E-value=38 Score=18.76 Aligned_cols=20 Identities=10% Similarity=0.061 Sum_probs=14.7
Q ss_pred EeeCCCCchhHHHHHHHHhh
Q 044272 37 SHPGDFTPVCTTELGKMAAY 56 (133)
Q Consensus 37 f~~~~~c~~C~~~~~~l~~~ 56 (133)
.|...+||.|.+..--|.+.
T Consensus 4 Ly~~~~sp~~~kv~~~L~~~ 23 (77)
T cd03041 4 LYEFEGSPFCRLVREVLTEL 23 (77)
T ss_pred EecCCCCchHHHHHHHHHHc
Confidence 34466799999887777664
No 271
>PF14427 Pput2613-deam: Pput_2613-like deaminase
Probab=53.38 E-value=21 Score=22.02 Aligned_cols=44 Identities=11% Similarity=0.255 Sum_probs=26.3
Q ss_pred CCceEEecCC-C----eeecccccCCCeEEEEEeeCCCCchhHHHHHHHHh
Q 044272 10 VPNLQVQTNQ-G----NFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAA 55 (133)
Q Consensus 10 ~p~f~l~~~~-G----~~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~ 55 (133)
+|.=+|-++. + .+.++++ .|..+++.=-+.. |+.|+-.|....+
T Consensus 42 FP~~slaTHTE~ri~~~l~~~~~-~Gd~m~I~G~ypP-C~~CkG~Mr~~s~ 90 (118)
T PF14427_consen 42 FPESSLATHTEARITRDLPLNQV-PGDRMLIDGQYPP-CNSCKGKMRRASE 90 (118)
T ss_pred CchhhhhhhhHhHHHhhcCcccc-CCceEEEeeecCC-CchhHHHHHHhhh
Confidence 4544454442 2 2555655 5666666554444 9999988877664
No 272
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=53.28 E-value=60 Score=21.05 Aligned_cols=61 Identities=13% Similarity=0.174 Sum_probs=37.0
Q ss_pred EecCCCeeecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHH---HHHHHh
Q 044272 15 VQTNQGNFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSH---NEWIKD 84 (133)
Q Consensus 15 l~~~~G~~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~---~~~~~~ 84 (133)
+-|.|||+..++. .|.. +-.....|. .+...+++.+++++|..++-+|.-+.... ++|+.+
T Consensus 3 isDIDGTL~~sd~-~~~~--~~~~~~~~~------~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~~ 66 (157)
T smart00775 3 ISDIDGTITKSDV-LGHV--VPIIGKDWT------HPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLSQ 66 (157)
T ss_pred EEecCCCCccccc-cccc--ccccccCcC------CHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHHH
Confidence 4578898877774 2321 111212232 25566667777888999888886554433 578877
No 273
>PRK10026 arsenate reductase; Provisional
Probab=52.05 E-value=31 Score=22.27 Aligned_cols=62 Identities=10% Similarity=0.008 Sum_probs=38.2
Q ss_pred EEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEe--CC--CHHHHHHHHHhcCCCC-ceeeCCcHHHHHHcCC
Q 044272 36 FSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLS--CD--DVKSHNEWIKDIEAYT-PIIADPNREIIKQLNM 105 (133)
Q Consensus 36 ~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is--~d--~~~~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~ 105 (133)
.+|....|.-|+....-|.+. |+.+-.+. -+ +.+.+..|.+..+... .++. ..+...+.++.
T Consensus 5 ~iY~~p~Cst~RKA~~wL~~~-------gi~~~~~d~~~~ppt~~eL~~~l~~~g~~~~~lin-t~~~~yr~L~~ 71 (141)
T PRK10026 5 TIYHNPACGTSRNTLEMIRNS-------GTEPTIIHYLETPPTRDELVKLIADMGISVRALLR-KNVEPYEELGL 71 (141)
T ss_pred EEEeCCCCHHHHHHHHHHHHC-------CCCcEEEeeeCCCcCHHHHHHHHHhCCCCHHHHHH-cCCchHHHcCC
Confidence 345566699999887776653 55544443 33 6788999999888643 3332 34445555554
No 274
>COG0415 PhrB Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair]
Probab=51.16 E-value=41 Score=26.23 Aligned_cols=42 Identities=21% Similarity=0.133 Sum_probs=36.5
Q ss_pred HHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCCC
Q 044272 48 TELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYT 89 (133)
Q Consensus 48 ~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~ 89 (133)
-....|+++++++.++|+.++....|+...+.+++++.+...
T Consensus 52 Fl~~sL~~L~~~L~~~gi~L~v~~~~~~~~l~~~~~~~~~~~ 93 (461)
T COG0415 52 FLLQSLQALQQSLAELGIPLLVREGDPEQVLPELAKQLAATT 93 (461)
T ss_pred HHHHHHHHHHHHHHHcCCceEEEeCCHHHHHHHHHHHhCcce
Confidence 346679999999999999999999999999999999988543
No 275
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=51.06 E-value=41 Score=20.44 Aligned_cols=30 Identities=7% Similarity=0.058 Sum_probs=18.5
Q ss_pred HHHhhhhHHHHcCceEEEEeCCCHHHHHHH
Q 044272 52 KMAAYVPEFDKREVKLLGLSCDDVKSHNEW 81 (133)
Q Consensus 52 ~l~~~~~~~~~~~v~vv~is~d~~~~~~~~ 81 (133)
.+.+..+..+++|+.+++|+.+....+.++
T Consensus 75 ~~~~~~~~a~~~g~~iv~iT~~~~~~l~~~ 104 (139)
T cd05013 75 ETVEAAEIAKERGAKVIAITDSANSPLAKL 104 (139)
T ss_pred HHHHHHHHHHHcCCeEEEEcCCCCChhHHh
Confidence 344444556667888888888654444443
No 276
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=50.64 E-value=1.1e+02 Score=23.16 Aligned_cols=71 Identities=13% Similarity=0.197 Sum_probs=42.1
Q ss_pred eeccccc--CCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCC-CCceeeCCc
Q 044272 22 FKLHDFI--GDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEA-YTPIIADPN 96 (133)
Q Consensus 22 ~~l~d~~--~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~-~~~~~~d~~ 96 (133)
+...+.. ++.++++.-...+-...-...+.++.+ +.+.|.+++=|+..+.+..+++.+-... +.|+++|-.
T Consensus 15 V~VG~v~iGg~~Pi~VQSMt~t~T~Dv~atv~Qi~~----L~~aGceiVRvav~~~~~a~al~~I~~~~~iPlvADIH 88 (360)
T PRK00366 15 VKVGNVPIGGDAPIVVQSMTNTDTADVEATVAQIKR----LARAGCEIVRVAVPDMEAAAALPEIKKQLPVPLVADIH 88 (360)
T ss_pred EEEcCEeECCCCcEEEEecCCCCchhHHHHHHHHHH----HHHcCCCEEEEccCCHHHHHhHHHHHHcCCCCEEEecC
Confidence 4444433 556888876544433333334444444 4556999999999877766655443333 349999843
No 277
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=50.62 E-value=1e+02 Score=23.05 Aligned_cols=64 Identities=17% Similarity=0.231 Sum_probs=38.8
Q ss_pred CCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcC-CCCceeeCCc
Q 044272 29 GDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIE-AYTPIIADPN 96 (133)
Q Consensus 29 ~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~-~~~~~~~d~~ 96 (133)
++.++.+.-...+...--...+.++.+ +.+.|.++|=|+..+.+..+++.+-.. .+.|+++|-.
T Consensus 16 G~~PI~VQSMtnt~T~Dv~atv~QI~~----L~~aGceiVRvavp~~~~A~al~~I~~~~~iPlVADIH 80 (346)
T TIGR00612 16 GDAPIVVQSMTNTDTIDIDSTVAQIRA----LEEAGCDIVRVTVPDRESAAAFEAIKEGTNVPLVADIH 80 (346)
T ss_pred CCCcEEEEecCCCCchhHHHHHHHHHH----HHHcCCCEEEEcCCCHHHHHhHHHHHhCCCCCEEEeeC
Confidence 456888876544433333333444443 455699999999987776665544333 3349999843
No 278
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=50.47 E-value=19 Score=21.90 Aligned_cols=30 Identities=7% Similarity=-0.091 Sum_probs=17.5
Q ss_pred HHHhhhhHHHHcCceEEEEeCCCHHHHHHH
Q 044272 52 KMAAYVPEFDKREVKLLGLSCDDVKSHNEW 81 (133)
Q Consensus 52 ~l~~~~~~~~~~~v~vv~is~d~~~~~~~~ 81 (133)
++.+..+..+++|..+|+|+..+...+.++
T Consensus 61 e~~~~~~~a~~~g~~vi~iT~~~~s~la~~ 90 (126)
T cd05008 61 DTLAALRLAKEKGAKTVAITNVVGSTLARE 90 (126)
T ss_pred HHHHHHHHHHHcCCeEEEEECCCCChHHHh
Confidence 344444455666788888877644444443
No 279
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=50.47 E-value=12 Score=20.07 Aligned_cols=17 Identities=12% Similarity=0.403 Sum_probs=13.0
Q ss_pred CCCchhHHHHHHHHhhh
Q 044272 41 DFTPVCTTELGKMAAYV 57 (133)
Q Consensus 41 ~~c~~C~~~~~~l~~~~ 57 (133)
-+||+|++-...+.+-+
T Consensus 44 g~CPiCRapi~dvIkTY 60 (62)
T KOG4172|consen 44 GCCPICRAPIKDVIKTY 60 (62)
T ss_pred CcCcchhhHHHHHHHhh
Confidence 46999999888776543
No 280
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=50.46 E-value=57 Score=19.99 Aligned_cols=44 Identities=5% Similarity=-0.056 Sum_probs=29.0
Q ss_pred EeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEe--CC--CHHHHHHHHHhcCC
Q 044272 37 SHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLS--CD--DVKSHNEWIKDIEA 87 (133)
Q Consensus 37 f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is--~d--~~~~~~~~~~~~~~ 87 (133)
+|....|+.|+....-|.+ .|+.+-.+. -+ +.+.+.+|....|.
T Consensus 4 iy~~p~C~~crkA~~~L~~-------~gi~~~~~d~~~~p~s~~eL~~~l~~~g~ 51 (113)
T cd03033 4 FYEKPGCANNARQKALLEA-------AGHEVEVRDLLTEPWTAETLRPFFGDLPV 51 (113)
T ss_pred EEECCCCHHHHHHHHHHHH-------cCCCcEEeehhcCCCCHHHHHHHHHHcCH
Confidence 4556779999987655554 355533333 33 57888899887763
No 281
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=50.25 E-value=43 Score=21.50 Aligned_cols=38 Identities=5% Similarity=-0.119 Sum_probs=28.3
Q ss_pred HHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCC
Q 044272 51 GKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAY 88 (133)
Q Consensus 51 ~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~ 88 (133)
+.+.++.+.++++|+.++.+|..........+++++..
T Consensus 76 ~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~~ 113 (177)
T TIGR01488 76 PGARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGID 113 (177)
T ss_pred cCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCc
Confidence 45666667777788888888887777777777777664
No 282
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=49.03 E-value=26 Score=19.25 Aligned_cols=19 Identities=11% Similarity=0.027 Sum_probs=13.9
Q ss_pred eeCCCCchhHHHHHHHHhh
Q 044272 38 HPGDFTPVCTTELGKMAAY 56 (133)
Q Consensus 38 ~~~~~c~~C~~~~~~l~~~ 56 (133)
|....||.|++...-|.+.
T Consensus 5 y~~~~~p~c~kv~~~L~~~ 23 (77)
T cd03040 5 YQYKTCPFCCKVRAFLDYH 23 (77)
T ss_pred EEcCCCHHHHHHHHHHHHC
Confidence 3356699999988777654
No 283
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=48.82 E-value=16 Score=22.36 Aligned_cols=30 Identities=7% Similarity=0.318 Sum_probs=18.3
Q ss_pred HHHhhhhHHHHcCceEEEEeCCCHHHHHHH
Q 044272 52 KMAAYVPEFDKREVKLLGLSCDDVKSHNEW 81 (133)
Q Consensus 52 ~l~~~~~~~~~~~v~vv~is~d~~~~~~~~ 81 (133)
++.+..+..+++|+.+|+|+......+.++
T Consensus 62 ~~~~~~~~a~~~g~~vi~iT~~~~s~la~~ 91 (128)
T cd05014 62 ELLNLLPHLKRRGAPIIAITGNPNSTLAKL 91 (128)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCCCCchhhh
Confidence 334444445666888888887655555444
No 284
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=48.54 E-value=44 Score=22.95 Aligned_cols=43 Identities=7% Similarity=-0.120 Sum_probs=35.8
Q ss_pred HHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCCC
Q 044272 47 TTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYT 89 (133)
Q Consensus 47 ~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~ 89 (133)
....+...++.+.++++|.+++.||-....-.+..+++++.+.
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~ 118 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDY 118 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCch
Confidence 4456677778888899999999999988888888899988876
No 285
>PF10453 NUFIP1: Nuclear fragile X mental retardation-interacting protein 1 (NUFIP1); InterPro: IPR019496 Nuclear fragile X mental retardation-interacting protein 1 (Nufip1) has been implicated in the assembly of the large subunit of the ribosome [] and in telomere maintenance []. It is known to bind RNA [] and is phosphorylated upon DNA damage []. This entry represents a conserved domain found within Nufip1. Some proteins containing this region also contain a CCCH zinc finger.
Probab=48.13 E-value=20 Score=19.27 Aligned_cols=25 Identities=16% Similarity=0.331 Sum_probs=19.8
Q ss_pred EEeCCCHHHHHHHHHhcCCCCceee
Q 044272 69 GLSCDDVKSHNEWIKDIEAYTPIIA 93 (133)
Q Consensus 69 ~is~d~~~~~~~~~~~~~~~~~~~~ 93 (133)
.+++++++.+.+|.++...+||.-.
T Consensus 14 ~~~L~t~eeI~~W~eERrk~~PT~~ 38 (56)
T PF10453_consen 14 SIKLQTPEEIAKWIEERRKNYPTKA 38 (56)
T ss_pred eeecCCHHHHHHHHHHHHHcCCcHH
Confidence 4556899999999999888876543
No 286
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=47.84 E-value=41 Score=23.81 Aligned_cols=40 Identities=18% Similarity=0.162 Sum_probs=32.2
Q ss_pred hhHHHHcCceEEEEeCCCHHHHHHHHHhcCCCC-ceeeCCc
Q 044272 57 VPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYT-PIIADPN 96 (133)
Q Consensus 57 ~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~-~~~~d~~ 96 (133)
+.++++.|+.||..|+-+..++..+.+..+... |+++...
T Consensus 32 ~~el~d~G~~Vi~~SSKT~aE~~~l~~~l~v~~~p~iaEnG 72 (274)
T COG3769 32 LLELKDAGVPVILCSSKTRAEMLYLQKSLGVQGLPLIAENG 72 (274)
T ss_pred HHHHHHcCCeEEEeccchHHHHHHHHHhcCCCCCceeecCC
Confidence 344566799999999999999999999999885 7777533
No 287
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=47.22 E-value=6.6 Score=25.28 Aligned_cols=19 Identities=16% Similarity=0.319 Sum_probs=15.1
Q ss_pred EEeeCCCCchhHHHHHHHH
Q 044272 36 FSHPGDFTPVCTTELGKMA 54 (133)
Q Consensus 36 ~f~~~~~c~~C~~~~~~l~ 54 (133)
+|-+-..||+|+..++.|-
T Consensus 5 IFGpei~CPhCRQ~ipALt 23 (163)
T TIGR02652 5 IFGPEIRCPHCRQNIPALT 23 (163)
T ss_pred ccCCcCcCchhhcccchhe
Confidence 3555677999999999884
No 288
>PF10673 DUF2487: Protein of unknown function (DUF2487); InterPro: IPR019615 This entry represents proteins with unknown function that appears to be restricted to Bacillus sp.
Probab=46.08 E-value=61 Score=20.97 Aligned_cols=25 Identities=16% Similarity=0.348 Sum_probs=20.3
Q ss_pred HHHHhhhhHHHHcCce-EEEEeCCCH
Q 044272 51 GKMAAYVPEFDKREVK-LLGLSCDDV 75 (133)
Q Consensus 51 ~~l~~~~~~~~~~~v~-vv~is~d~~ 75 (133)
..|++..+.+++.|++ |+.|+.|..
T Consensus 71 ~~L~~w~~~l~~~GFkhV~~lT~D~~ 96 (142)
T PF10673_consen 71 ERLNDWCEELKESGFKHVFYLTSDSE 96 (142)
T ss_pred HHHHHHHHHHHhcCCcEEEEEecCcc
Confidence 4688888889999988 888999843
No 289
>PRK05370 argininosuccinate synthase; Validated
Probab=45.62 E-value=66 Score=25.03 Aligned_cols=71 Identities=8% Similarity=-0.051 Sum_probs=47.5
Q ss_pred ecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCC-------HHHHHHHHHhcCCCCceeeCC
Q 044272 23 KLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDD-------VKSHNEWIKDIEAYTPIIADP 95 (133)
Q Consensus 23 ~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~-------~~~~~~~~~~~~~~~~~~~d~ 95 (133)
.++++.+|++++|-|=-+--..+|...+. +.|..|++++.|- .+.+++-+.+.|.....+.|.
T Consensus 4 ~~~~l~~~~KVvLAYSGGLDTSv~l~wL~----------e~~~eVia~~aDvGQ~~~ed~~~i~~kA~~~GA~~~~viDl 73 (447)
T PRK05370 4 ILKHLPVGQRVGIAFSGGLDTSAALLWMR----------QKGAVPYAYTANLGQPDEDDYDAIPRRAMEYGAENARLIDC 73 (447)
T ss_pred hhhhCCCCCEEEEEecCCchHHHHHHHHH----------hcCCeEEEEEEECCCCCccchHHHHHHHHHhCCCEEEEecc
Confidence 35677677778777654455566654332 1267788887642 246667777888776788898
Q ss_pred cHHHHHHc
Q 044272 96 NREIIKQL 103 (133)
Q Consensus 96 ~~~~~~~~ 103 (133)
..++.+.|
T Consensus 74 r~eF~e~~ 81 (447)
T PRK05370 74 RAQLVAEG 81 (447)
T ss_pred HHHHHHHH
Confidence 88888777
No 290
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=45.60 E-value=54 Score=25.88 Aligned_cols=41 Identities=12% Similarity=0.112 Sum_probs=34.0
Q ss_pred HHHHHHhhhhHHHHcCc-eEEEEeCCCHHHHHHHHHhcCCCC
Q 044272 49 ELGKMAAYVPEFDKREV-KLLGLSCDDVKSHNEWIKDIEAYT 89 (133)
Q Consensus 49 ~~~~l~~~~~~~~~~~v-~vv~is~d~~~~~~~~~~~~~~~~ 89 (133)
..+...+..++++++|+ ++..+|.|+.....+.+++.+.+.
T Consensus 363 l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~lgi~~ 404 (536)
T TIGR01512 363 PRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVARELGIDE 404 (536)
T ss_pred chHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHcCChh
Confidence 35666777778888899 999999999999999999988754
No 291
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=45.35 E-value=54 Score=26.92 Aligned_cols=37 Identities=11% Similarity=0.092 Sum_probs=23.4
Q ss_pred HHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCC
Q 044272 52 KMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAY 88 (133)
Q Consensus 52 ~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~ 88 (133)
+..+..+++++.|++++.+|-|.+....+.+++.|.+
T Consensus 449 ~~~eai~~Lr~~GI~vvMiTGDn~~TA~aIA~elGId 485 (679)
T PRK01122 449 GIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVD 485 (679)
T ss_pred hHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCc
Confidence 3334444556667777777777777777777776654
No 292
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=45.14 E-value=60 Score=20.90 Aligned_cols=38 Identities=11% Similarity=0.197 Sum_probs=23.0
Q ss_pred eEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCC
Q 044272 32 WTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCD 73 (133)
Q Consensus 32 ~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d 73 (133)
+-.+++|-+. |+.|.....-|.+.- ....+++.++-.+
T Consensus 8 p~~vvlyDG~-C~lC~~~vrfLi~~D---~~~~i~f~~~q~e 45 (137)
T COG3011 8 PDLVVLYDGV-CPLCDGWVRFLIRRD---QGGRIRFAALQSE 45 (137)
T ss_pred CCEEEEECCc-chhHHHHHHHHHHhc---cCCcEEEEeccCc
Confidence 4445555565 999999888887642 1223555555443
No 293
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=44.86 E-value=44 Score=17.07 Aligned_cols=19 Identities=5% Similarity=-0.328 Sum_probs=13.6
Q ss_pred eeCCCCchhHHHHHHHHhh
Q 044272 38 HPGDFTPVCTTELGKMAAY 56 (133)
Q Consensus 38 ~~~~~c~~C~~~~~~l~~~ 56 (133)
|...+||.|.+...-|...
T Consensus 4 y~~~~~~~~~~~~~~l~~~ 22 (71)
T cd00570 4 YYFPGSPRSLRVRLALEEK 22 (71)
T ss_pred EeCCCCccHHHHHHHHHHc
Confidence 3456699999877776654
No 294
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=44.81 E-value=73 Score=19.53 Aligned_cols=63 Identities=13% Similarity=0.238 Sum_probs=34.6
Q ss_pred HHHhhhhHHHHcCceEE--EEeCCCHHHHHHHHHhcCCCC----ceeeCCcHHHHHHcCCCCCCCCCCCCCCccceeEEE
Q 044272 52 KMAAYVPEFDKREVKLL--GLSCDDVKSHNEWIKDIEAYT----PIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHI 125 (133)
Q Consensus 52 ~l~~~~~~~~~~~v~vv--~is~d~~~~~~~~~~~~~~~~----~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l 125 (133)
.|.++.++.++.|+.++ ++-.++-....+++.+..... .+.- +..+.++|++ ...|++++
T Consensus 12 ~L~~l~~~a~~~~~~~V~RG~~~g~~~~t~~~~~~l~~~~~~~~~v~I--dP~~F~~y~I------------~~VPa~V~ 77 (113)
T PF09673_consen 12 SLRNLLKQAERAGVVVVFRGFPDGSFKPTAKAIQELLRKDDPCPGVQI--DPRLFRQYNI------------TAVPAFVV 77 (113)
T ss_pred HHHHHHHHHHhCCcEEEEECCCCCCHHHHHHHHHHHhhccCCCcceeE--ChhHHhhCCc------------eEcCEEEE
Confidence 34444555555566544 333344343444433333222 3444 4468899999 57888888
Q ss_pred ECC
Q 044272 126 VGP 128 (133)
Q Consensus 126 id~ 128 (133)
...
T Consensus 78 ~~~ 80 (113)
T PF09673_consen 78 VKD 80 (113)
T ss_pred EcC
Confidence 765
No 295
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=44.68 E-value=86 Score=20.33 Aligned_cols=15 Identities=7% Similarity=0.180 Sum_probs=11.6
Q ss_pred CCchhHHHHHHHHhh
Q 044272 42 FTPVCTTELGKMAAY 56 (133)
Q Consensus 42 ~c~~C~~~~~~l~~~ 56 (133)
+||.|.....-|..+
T Consensus 15 t~~~C~~ak~iL~~~ 29 (147)
T cd03031 15 TFEDCNNVRAILESF 29 (147)
T ss_pred cChhHHHHHHHHHHC
Confidence 699998877776654
No 296
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=44.62 E-value=54 Score=23.17 Aligned_cols=44 Identities=16% Similarity=0.138 Sum_probs=34.5
Q ss_pred hhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCCC
Q 044272 45 VCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYT 89 (133)
Q Consensus 45 ~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~ 89 (133)
-+......|....+.+++.|+++ ++-.|+....-+.+++.|.+.
T Consensus 104 dv~~~~~~l~~~i~~l~~~gI~V-SLFiDP~~~qi~~A~~~GAd~ 147 (237)
T TIGR00559 104 DVARLKDKLCELVKRFHAAGIEV-SLFIDADKDQISAAAEVGADR 147 (237)
T ss_pred hhhhCHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHhCcCE
Confidence 45566777888888899999874 566787788888999999876
No 297
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=44.33 E-value=1.5e+02 Score=23.01 Aligned_cols=55 Identities=20% Similarity=0.099 Sum_probs=30.2
Q ss_pred CeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCC-----HHHHHHHHHhcCCCC
Q 044272 31 NWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDD-----VKSHNEWIKDIEAYT 89 (133)
Q Consensus 31 ~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~-----~~~~~~~~~~~~~~~ 89 (133)
++.++.|. +.....=+.....|. ..+.+.|.++..|+.|+ .+.++.++++.+.++
T Consensus 94 ~p~vI~lv-G~~GsGKTTtaakLA---~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~ 153 (437)
T PRK00771 94 KPQTIMLV-GLQGSGKTTTAAKLA---RYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPF 153 (437)
T ss_pred CCeEEEEE-CCCCCcHHHHHHHHH---HHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcE
Confidence 45566655 432222222333343 34455678888888885 344566777766543
No 298
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=43.84 E-value=51 Score=21.94 Aligned_cols=38 Identities=5% Similarity=-0.015 Sum_probs=25.7
Q ss_pred HHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCC
Q 044272 51 GKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAY 88 (133)
Q Consensus 51 ~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~ 88 (133)
+...++.+.++++|+.+..+|..+...+....++.+..
T Consensus 88 ~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~ 125 (213)
T TIGR01449 88 PGVEATLGALRAKGLRLGLVTNKPTPLARPLLELLGLA 125 (213)
T ss_pred CCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCcH
Confidence 34445555666677887777777777777777777654
No 299
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=43.84 E-value=53 Score=23.25 Aligned_cols=43 Identities=12% Similarity=0.163 Sum_probs=31.3
Q ss_pred hHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCCC
Q 044272 46 CTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYT 89 (133)
Q Consensus 46 C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~ 89 (133)
+......|....+.+++.|+++ ++..|+....-+.+.+.|.+.
T Consensus 106 v~~~~~~l~~~i~~L~~~gIrv-SLFiDP~~~qi~~A~~~Gad~ 148 (239)
T PF03740_consen 106 VAGNRDRLKPVIKRLKDAGIRV-SLFIDPDPEQIEAAKELGADR 148 (239)
T ss_dssp TCGGHHHHHHHHHHHHHTT-EE-EEEE-S-HHHHHHHHHTT-SE
T ss_pred hhcCHHHHHHHHHHHHhCCCEE-EEEeCCCHHHHHHHHHcCCCE
Confidence 3455678888888999999874 777888788888999999876
No 300
>PF08394 Arc_trans_TRASH: Archaeal TRASH domain; InterPro: IPR013603 This region is found in the C terminus of a number of archaeal transcriptional regulators. It is thought to function as a metal-sensing regulatory module [].
Probab=43.63 E-value=21 Score=17.41 Aligned_cols=11 Identities=27% Similarity=0.721 Sum_probs=8.8
Q ss_pred CCchhHHHHHH
Q 044272 42 FTPVCTTELGK 52 (133)
Q Consensus 42 ~c~~C~~~~~~ 52 (133)
||+.|..++.+
T Consensus 25 CC~tC~~~fk~ 35 (37)
T PF08394_consen 25 CCPTCLSQFKK 35 (37)
T ss_pred ECHHHHHHHHh
Confidence 79999988653
No 301
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=43.59 E-value=53 Score=17.61 Aligned_cols=17 Identities=12% Similarity=0.122 Sum_probs=12.8
Q ss_pred CCCCchhHHHHHHHHhh
Q 044272 40 GDFTPVCTTELGKMAAY 56 (133)
Q Consensus 40 ~~~c~~C~~~~~~l~~~ 56 (133)
..+||.|.+..-.|...
T Consensus 6 ~~~~p~~~rvr~~L~~~ 22 (71)
T cd03037 6 YEHCPFCVKARMIAGLK 22 (71)
T ss_pred cCCCcHhHHHHHHHHHc
Confidence 56799999877766654
No 302
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=43.48 E-value=63 Score=26.52 Aligned_cols=36 Identities=8% Similarity=0.056 Sum_probs=25.0
Q ss_pred HHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCC
Q 044272 53 MAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAY 88 (133)
Q Consensus 53 l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~ 88 (133)
..+..+++++.|++++.||-|.+....+.+++.|..
T Consensus 446 a~e~I~~Lr~~GI~vvMiTGDn~~TA~aIA~elGI~ 481 (673)
T PRK14010 446 LVERFRELREMGIETVMCTGDNELTAATIAKEAGVD 481 (673)
T ss_pred HHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCc
Confidence 333344556667888888888877777777777764
No 303
>PRK04011 peptide chain release factor 1; Provisional
Probab=43.28 E-value=39 Score=25.87 Aligned_cols=26 Identities=12% Similarity=0.060 Sum_probs=18.8
Q ss_pred HHHHhhhhHHHHcCceEEEEeCCCHH
Q 044272 51 GKMAAYVPEFDKREVKLLGLSCDDVK 76 (133)
Q Consensus 51 ~~l~~~~~~~~~~~v~vv~is~d~~~ 76 (133)
+.+.++.+..++.|.+|..||.++++
T Consensus 367 ~~v~~l~e~a~~~g~~v~iis~~~e~ 392 (411)
T PRK04011 367 DIIEELSELAEQSGTKVEVISTDTEE 392 (411)
T ss_pred hHHHHHHHHHHHcCCEEEEECCCChh
Confidence 34556666677778899889887654
No 304
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=43.28 E-value=64 Score=25.02 Aligned_cols=14 Identities=7% Similarity=0.242 Sum_probs=12.5
Q ss_pred ccceeEEEECCCCc
Q 044272 118 LPSRALHIVGPDHQ 131 (133)
Q Consensus 118 ~~~p~~~lid~~G~ 131 (133)
..+|+.|+|+.+|+
T Consensus 76 v~vPs~ffIg~sGt 89 (506)
T KOG2507|consen 76 VSVPSIFFIGFSGT 89 (506)
T ss_pred ccccceeeecCCCc
Confidence 58999999999986
No 305
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=42.92 E-value=7.5 Score=25.00 Aligned_cols=18 Identities=17% Similarity=0.311 Sum_probs=14.3
Q ss_pred EeeCCCCchhHHHHHHHH
Q 044272 37 SHPGDFTPVCTTELGKMA 54 (133)
Q Consensus 37 f~~~~~c~~C~~~~~~l~ 54 (133)
|-+-..||+|+..++.|-
T Consensus 3 FGpei~CPhCRq~ipALt 20 (161)
T PF09654_consen 3 FGPEIQCPHCRQTIPALT 20 (161)
T ss_pred cCCcCcCchhhcccchhe
Confidence 445567999999999885
No 306
>COG0409 HypD Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=42.57 E-value=22 Score=26.44 Aligned_cols=45 Identities=18% Similarity=0.326 Sum_probs=31.0
Q ss_pred ecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEE
Q 044272 23 KLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGL 70 (133)
Q Consensus 23 ~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~i 70 (133)
.+.++... -+-|..+..||+|-.-+.++....+-.+.+++.+...
T Consensus 47 Gl~slLPe---Ni~~i~GPGCPVCVtp~~~id~aiela~~~~~i~~Tf 91 (364)
T COG0409 47 GLRSLLPE---NVEFIHGPGCPVCVTPMGRIDTAIELASSKDVIFCTF 91 (364)
T ss_pred hHhhhCcc---ceEEecCCCCCeEeeEHHHHHHHHHHhCCCCcEEEec
Confidence 44554433 3667779999999999999988766554555555444
No 307
>PRK06126 hypothetical protein; Provisional
Probab=42.47 E-value=1.3e+02 Score=23.69 Aligned_cols=30 Identities=20% Similarity=0.326 Sum_probs=18.5
Q ss_pred CCCCCCCceEEecCCCeeecccccCCCeEEEEE
Q 044272 5 TIGDSVPNLQVQTNQGNFKLHDFIGDNWTIIFS 37 (133)
Q Consensus 5 ~~G~~~p~f~l~~~~G~~~l~d~~~~~~~vl~f 37 (133)
.+|..+|..-+.+ .+++.|+.+...++|.|
T Consensus 447 ~pG~r~ph~~l~~---~~s~~dl~g~~f~Ll~~ 476 (545)
T PRK06126 447 CPGGRAPHAWLSD---GRSLYDLFGPGFTLLRF 476 (545)
T ss_pred CCCcCCCCeeecC---CcchHHhcCCceEEEec
Confidence 5677788776632 35666665555666554
No 308
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=42.45 E-value=59 Score=21.83 Aligned_cols=39 Identities=8% Similarity=-0.072 Sum_probs=28.0
Q ss_pred HHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCCC
Q 044272 51 GKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYT 89 (133)
Q Consensus 51 ~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~ 89 (133)
+...++.+.++++|.++..+|..........++..+...
T Consensus 88 ~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~i~~ 126 (219)
T TIGR00338 88 EGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLDA 126 (219)
T ss_pred CCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCc
Confidence 344445566677789998888887777777888777643
No 309
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=42.44 E-value=30 Score=18.49 Aligned_cols=20 Identities=10% Similarity=-0.227 Sum_probs=15.1
Q ss_pred EeeCCCCchhHHHHHHHHhh
Q 044272 37 SHPGDFTPVCTTELGKMAAY 56 (133)
Q Consensus 37 f~~~~~c~~C~~~~~~l~~~ 56 (133)
.|...+|+.|.+..-.|.+.
T Consensus 3 Ly~~~~s~~~~~~~~~L~~~ 22 (74)
T cd03051 3 LYDSPTAPNPRRVRIFLAEK 22 (74)
T ss_pred EEeCCCCcchHHHHHHHHHc
Confidence 34466799999988777764
No 310
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=42.06 E-value=18 Score=20.78 Aligned_cols=21 Identities=10% Similarity=0.412 Sum_probs=16.2
Q ss_pred CCCCchhHHHHHHHHhhhhHH
Q 044272 40 GDFTPVCTTELGKMAAYVPEF 60 (133)
Q Consensus 40 ~~~c~~C~~~~~~l~~~~~~~ 60 (133)
+..||.|......|.++.-.|
T Consensus 9 sn~Cpdca~a~eyl~rl~v~y 29 (85)
T COG4545 9 SNLCPDCAPAVEYLERLNVDY 29 (85)
T ss_pred cccCcchHHHHHHHHHcCCCc
Confidence 788999998888887764333
No 311
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=41.99 E-value=1.2e+02 Score=21.07 Aligned_cols=45 Identities=18% Similarity=0.131 Sum_probs=34.4
Q ss_pred hHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCCCc
Q 044272 46 CTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTP 90 (133)
Q Consensus 46 C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~ 90 (133)
.....+.+.+..+++.++|+.++..|.=+...++++..+++...|
T Consensus 19 ~~~~~~~~~~~i~~~~~~gi~fv~aTGR~~~~~~~~~~~~~~~~p 63 (249)
T TIGR01485 19 DNQALLRLNALLEDHRGEDSLLVYSTGRSPHSYKELQKQKPLLTP 63 (249)
T ss_pred ChHHHHHHHHHHHHhhccCceEEEEcCCCHHHHHHHHhcCCCCCC
Confidence 355678888888888888888888887788888888777765544
No 312
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=41.88 E-value=12 Score=16.56 Aligned_cols=9 Identities=44% Similarity=0.829 Sum_probs=7.3
Q ss_pred CCchhHHHH
Q 044272 42 FTPVCTTEL 50 (133)
Q Consensus 42 ~c~~C~~~~ 50 (133)
-||+|...+
T Consensus 3 ~CPiC~~~v 11 (26)
T smart00734 3 QCPVCFREV 11 (26)
T ss_pred cCCCCcCcc
Confidence 399998886
No 313
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=41.70 E-value=1.3e+02 Score=21.57 Aligned_cols=53 Identities=17% Similarity=0.257 Sum_probs=32.7
Q ss_pred ceEEEEeCCC-----HHHHHHHHHhcCCCCceeeCCcHHHHHHcCCCCCCCCCCCCCCccceeEEEECCCC
Q 044272 65 VKLLGLSCDD-----VKSHNEWIKDIEAYTPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDH 130 (133)
Q Consensus 65 v~vv~is~d~-----~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G 130 (133)
..|..|+.|+ .+.+..|+...+.++....+ ...+.+...-. .....+|||.-|
T Consensus 225 ~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~-~~~l~~~l~~~------------~~~d~vliDt~G 282 (282)
T TIGR03499 225 KKVALITTDTYRIGAVEQLKTYAKILGVPVKVARD-PKELRKALDRL------------RDKDLILIDTAG 282 (282)
T ss_pred CeEEEEECCccchhHHHHHHHHHHHhCCceeccCC-HHHHHHHHHHc------------cCCCEEEEeCCC
Confidence 6788888887 56777888887766544433 23444443321 123678888655
No 314
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=41.57 E-value=86 Score=19.45 Aligned_cols=31 Identities=10% Similarity=0.135 Sum_probs=16.4
Q ss_pred HHHhhhhHHHHcCceEEEEeCC--CHHHHHHHH
Q 044272 52 KMAAYVPEFDKREVKLLGLSCD--DVKSHNEWI 82 (133)
Q Consensus 52 ~l~~~~~~~~~~~v~vv~is~d--~~~~~~~~~ 82 (133)
+..+..+.+++.++.++.|... ..+.+.+++
T Consensus 120 ~~~~~~~~~~~~~v~v~~i~~g~~~~~~l~~la 152 (161)
T cd01450 120 DPKEAAAKLKDEGIKVFVVGVGPADEEELREIA 152 (161)
T ss_pred chHHHHHHHHHCCCEEEEEeccccCHHHHHHHh
Confidence 3444445555567776666664 344444443
No 315
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=41.54 E-value=73 Score=26.21 Aligned_cols=37 Identities=8% Similarity=0.083 Sum_probs=24.6
Q ss_pred HHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCC
Q 044272 52 KMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAY 88 (133)
Q Consensus 52 ~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~ 88 (133)
+..+..+++++.|++++.||-|......+.+++.|.+
T Consensus 450 ~a~eaI~~l~~~Gi~v~miTGD~~~ta~~iA~~lGI~ 486 (675)
T TIGR01497 450 GIKERFAQLRKMGIKTIMITGDNRLTAAAIAAEAGVD 486 (675)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC
Confidence 3344444556667777777777777777777777764
No 316
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=41.53 E-value=1.1e+02 Score=20.72 Aligned_cols=36 Identities=11% Similarity=0.266 Sum_probs=25.4
Q ss_pred HHHhhhhHHHHcCceEEEEeC----CCHHHHHHHHHhcCC
Q 044272 52 KMAAYVPEFDKREVKLLGLSC----DDVKSHNEWIKDIEA 87 (133)
Q Consensus 52 ~l~~~~~~~~~~~v~vv~is~----d~~~~~~~~~~~~~~ 87 (133)
.+.+..+++++.|+++-.|+. +..+.+..|.+....
T Consensus 124 ~i~~~~~~lkk~~I~v~vI~~G~~~~~~~~l~~~~~~~~~ 163 (187)
T cd01452 124 DLVKLAKRLKKNNVSVDIINFGEIDDNTEKLTAFIDAVNG 163 (187)
T ss_pred HHHHHHHHHHHcCCeEEEEEeCCCCCCHHHHHHHHHHhcC
Confidence 455667778888888666665 357778888877653
No 317
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=40.79 E-value=97 Score=19.85 Aligned_cols=13 Identities=15% Similarity=0.358 Sum_probs=7.5
Q ss_pred cceeEEEECCCCcc
Q 044272 119 PSRALHIVGPDHQV 132 (133)
Q Consensus 119 ~~p~~~lid~~G~i 132 (133)
..|++-|+ +||++
T Consensus 95 SSPS~ALf-KdGel 107 (136)
T PF06491_consen 95 SSPSIALF-KDGEL 107 (136)
T ss_dssp -SSEEEEE-ETTEE
T ss_pred CCchheee-eCCEE
Confidence 56666666 56654
No 318
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=40.77 E-value=77 Score=20.75 Aligned_cols=38 Identities=8% Similarity=-0.043 Sum_probs=27.5
Q ss_pred HHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCC
Q 044272 51 GKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAY 88 (133)
Q Consensus 51 ~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~ 88 (133)
+...++.+.++++|+.++.+|..........++.++..
T Consensus 83 ~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~ 120 (201)
T TIGR01491 83 DYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPD 120 (201)
T ss_pred ccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCC
Confidence 34455566677788999888887777777777777754
No 319
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=40.73 E-value=81 Score=18.93 Aligned_cols=58 Identities=9% Similarity=0.134 Sum_probs=35.4
Q ss_pred CCCCchhHHHHHHHHhhhhHHHHcCceEEEEeC--C--CHHHHHHHHHhcCCCCceeeCCcHHHHHHcC
Q 044272 40 GDFTPVCTTELGKMAAYVPEFDKREVKLLGLSC--D--DVKSHNEWIKDIEAYTPIIADPNREIIKQLN 104 (133)
Q Consensus 40 ~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~--d--~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 104 (133)
...|..|+..+.-|.+ .|+.+-.+.. + +.+.+.+++...+....-+....+...+.++
T Consensus 3 ~~~C~t~rka~~~L~~-------~gi~~~~~d~~k~p~s~~el~~~l~~~~~~~~~lin~~~~~~k~l~ 64 (110)
T PF03960_consen 3 NPNCSTCRKALKWLEE-------NGIEYEFIDYKKEPLSREELRELLSKLGNGPDDLINTRSKTYKELG 64 (110)
T ss_dssp -TT-HHHHHHHHHHHH-------TT--EEEEETTTS---HHHHHHHHHHHTSSGGGGB-TTSHHHHHTT
T ss_pred CCCCHHHHHHHHHHHH-------cCCCeEeehhhhCCCCHHHHHHHHHHhcccHHHHhcCccchHhhhh
Confidence 3458888877666654 4677666664 2 5788899999999666333345556666666
No 320
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=40.60 E-value=66 Score=22.70 Aligned_cols=43 Identities=14% Similarity=0.180 Sum_probs=34.5
Q ss_pred hHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCCC
Q 044272 46 CTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYT 89 (133)
Q Consensus 46 C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~ 89 (133)
+......|....+.+++.|++ +++-.|+....-+.+.+.|.+.
T Consensus 105 v~~~~~~l~~~i~~l~~~gI~-VSLFiDPd~~qi~~A~~~GAd~ 147 (234)
T cd00003 105 VAGQAEKLKPIIERLKDAGIR-VSLFIDPDPEQIEAAKEVGADR 147 (234)
T ss_pred hhcCHHHHHHHHHHHHHCCCE-EEEEeCCCHHHHHHHHHhCcCE
Confidence 445667788888889999997 5777888788888999999876
No 321
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=40.53 E-value=18 Score=24.00 Aligned_cols=29 Identities=7% Similarity=0.125 Sum_probs=21.4
Q ss_pred EeeCCCCchhHHHHHHHHhhhhHHHHcCce
Q 044272 37 SHPGDFTPVCTTELGKMAAYVPEFDKREVK 66 (133)
Q Consensus 37 f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~ 66 (133)
.|.-+.|+.|-..-+.+.++..++..+ +.
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~-i~ 30 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNK-IE 30 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TT-EE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCc-EE
Confidence 345788999999999999999998865 54
No 322
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.46 E-value=1.3e+02 Score=23.41 Aligned_cols=54 Identities=13% Similarity=0.039 Sum_probs=32.1
Q ss_pred CCCeEEEEEeeCC---CCchhHHHHHHHHhhhhHHHHcCceEEEEeCCC-----HHHHHHHHHhcCCCC
Q 044272 29 GDNWTIIFSHPGD---FTPVCTTELGKMAAYVPEFDKREVKLLGLSCDD-----VKSHNEWIKDIEAYT 89 (133)
Q Consensus 29 ~~~~~vl~f~~~~---~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~-----~~~~~~~~~~~~~~~ 89 (133)
++++.|+.|.--. -.+.|.+... .|+++|.++..|..|+ -+.++.++.+.+.++
T Consensus 98 K~kpsVimfVGLqG~GKTTtc~KlA~-------y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ 159 (483)
T KOG0780|consen 98 KGKPSVIMFVGLQGSGKTTTCTKLAY-------YYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPF 159 (483)
T ss_pred cCCCcEEEEEeccCCCcceeHHHHHH-------HHHhcCCceeEEeecccccchHHHHHHHhHhhCCee
Confidence 5667777775211 1344544333 3455688877777765 456677777777665
No 323
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=40.39 E-value=81 Score=18.81 Aligned_cols=53 Identities=9% Similarity=0.141 Sum_probs=38.6
Q ss_pred CeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCC
Q 044272 31 NWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEA 87 (133)
Q Consensus 31 ~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~ 87 (133)
+.+++.+ +..+.+...-+..|.++.+.++.+|++++.++.. ....+..+..+.
T Consensus 49 ~~vIlD~--s~v~~iDssgi~~L~~~~~~~~~~g~~~~l~~~~--~~v~~~l~~~~~ 101 (117)
T PF01740_consen 49 KNVILDM--SGVSFIDSSGIQALVDIIKELRRRGVQLVLVGLN--PDVRRILERSGL 101 (117)
T ss_dssp SEEEEEE--TTESEESHHHHHHHHHHHHHHHHTTCEEEEESHH--HHHHHHHHHTTG
T ss_pred eEEEEEE--EeCCcCCHHHHHHHHHHHHHHHHCCCEEEEEECC--HHHHHHHHHcCC
Confidence 4566665 5558888888999999999999999998888774 334444554443
No 324
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=40.38 E-value=63 Score=22.88 Aligned_cols=44 Identities=11% Similarity=0.153 Sum_probs=34.3
Q ss_pred hhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCCC
Q 044272 45 VCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYT 89 (133)
Q Consensus 45 ~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~ 89 (133)
.+......|....+.+++.|+++ ++-.|+....-+.+++.|.+.
T Consensus 107 dv~~~~~~l~~~i~~L~~~gIrV-SLFidP~~~qi~~A~~~GAd~ 150 (239)
T PRK05265 107 DVAGQFDKLKPAIARLKDAGIRV-SLFIDPDPEQIEAAAEVGADR 150 (239)
T ss_pred hhhcCHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHhCcCE
Confidence 35566778888888899999874 566687788888899999876
No 325
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=40.29 E-value=1.3e+02 Score=21.23 Aligned_cols=24 Identities=4% Similarity=0.155 Sum_probs=17.7
Q ss_pred HHHHhhhhHHHHcCceEEEEeCCC
Q 044272 51 GKMAAYVPEFDKREVKLLGLSCDD 74 (133)
Q Consensus 51 ~~l~~~~~~~~~~~v~vv~is~d~ 74 (133)
..|.++..++.+.|+.|++|..|-
T Consensus 196 ~~l~~iI~~l~~~g~~VvAivsD~ 219 (236)
T PF12017_consen 196 DILKNIIEKLHEIGYNVVAIVSDM 219 (236)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCC
Confidence 334455567788899999999884
No 326
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=39.76 E-value=1.7e+02 Score=23.18 Aligned_cols=25 Identities=0% Similarity=-0.102 Sum_probs=13.2
Q ss_pred eEEEEEeeCCCCchhHHHHHHHHhh
Q 044272 32 WTIIFSHPGDFTPVCTTELGKMAAY 56 (133)
Q Consensus 32 ~~vl~f~~~~~c~~C~~~~~~l~~~ 56 (133)
++.|.+|....|..|.....-|.++
T Consensus 367 ~v~l~~~~~~~~~~~~e~~~~l~e~ 391 (555)
T TIGR03143 367 PVTLLLFLDGSNEKSAELQSFLGEF 391 (555)
T ss_pred CEEEEEEECCCchhhHHHHHHHHHH
Confidence 4545444455577776554444443
No 327
>PF01924 HypD: Hydrogenase formation hypA family; InterPro: IPR002780 HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes []. This protein has been found in Gram-negative and Gram-positive bacteria and Archaea. HypD contains many possible metal binding residues, which may bind to nickel. Transposon insertions into HypD resulted in Rhizobium leguminosarum mutants that lacked any hydrogenase activity in symbiosis with peas [].; GO: 0046872 metal ion binding; PDB: 2Z1D_A.
Probab=39.75 E-value=35 Score=25.58 Aligned_cols=36 Identities=28% Similarity=0.305 Sum_probs=20.6
Q ss_pred EEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEE
Q 044272 35 IFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGL 70 (133)
Q Consensus 35 l~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~i 70 (133)
+.+..+..||+|-.-...+.+..+--+..|+.+...
T Consensus 49 I~lisGPGCPVCVtp~~~ID~ai~LA~~~~vil~Tf 84 (355)
T PF01924_consen 49 IELISGPGCPVCVTPQGDIDAAIELAKRPGVILATF 84 (355)
T ss_dssp EEEEE-S--TTTTS-HHHHHHHHHHHTT--EEEEE-
T ss_pred cEEecCCCCccEECcHHHHHHHHHHhCCCCeEEEeC
Confidence 455669999999999999988765544455555444
No 328
>PLN02954 phosphoserine phosphatase
Probab=39.72 E-value=75 Score=21.39 Aligned_cols=38 Identities=8% Similarity=-0.081 Sum_probs=29.1
Q ss_pred HHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCC
Q 044272 51 GKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAY 88 (133)
Q Consensus 51 ~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~ 88 (133)
+.+.++.+.++++|+.+..+|......+...++.++.+
T Consensus 87 pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~gi~ 124 (224)
T PLN02954 87 PGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAILGIP 124 (224)
T ss_pred ccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHhCCC
Confidence 55666677777788998888888777777788887765
No 329
>PLN02640 glucose-6-phosphate 1-dehydrogenase
Probab=39.08 E-value=1.8e+02 Score=23.60 Aligned_cols=68 Identities=9% Similarity=-0.012 Sum_probs=38.9
Q ss_pred CCCCCCceEEecCCCeeecccccC-CCeEEEEEeeCCCCchhHHHHHHHHhhhhHH-HHcCceEEEEeCC
Q 044272 6 IGDSVPNLQVQTNQGNFKLHDFIG-DNWTIIFSHPGDFTPVCTTELGKMAAYVPEF-DKREVKLLGLSCD 73 (133)
Q Consensus 6 ~G~~~p~f~l~~~~G~~~l~d~~~-~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~-~~~~v~vv~is~d 73 (133)
-|+++...++.|...-++-....+ .....++.|-++.-=.-++.+|.|-+++..- -.+++.||+++..
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iVIFGATGDLA~RKL~PALy~L~~~g~Lp~~~~IIG~aR~ 130 (573)
T PLN02640 61 NGHPLNAVSLQDGENHLTEEHAEKGESTLSITVVGASGDLAKKKIFPALFALFYEDWLPENFTVFGYART 130 (573)
T ss_pred CCCcccceecccccccccHhhccCCCCCeEEEEeCCccHhhhhhHHHHHHHHHHcCCCCCCCEEEEEECC
Confidence 455555666654433222211112 2345555555665555677899998886432 2347999999974
No 330
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=39.04 E-value=34 Score=20.96 Aligned_cols=28 Identities=14% Similarity=0.172 Sum_probs=15.0
Q ss_pred HHHhhhhHHHHcCceEEEEeCCCHHHHH
Q 044272 52 KMAAYVPEFDKREVKLLGLSCDDVKSHN 79 (133)
Q Consensus 52 ~l~~~~~~~~~~~v~vv~is~d~~~~~~ 79 (133)
++.+..+..+++|..+++|+......+.
T Consensus 62 ~~~~~~~~a~~~g~~vi~iT~~~~s~la 89 (120)
T cd05710 62 ETVAAAKFAKEKGATVIGLTDDEDSPLA 89 (120)
T ss_pred HHHHHHHHHHHcCCeEEEEECCCCCcHH
Confidence 3334444445567777777765433333
No 331
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=38.93 E-value=72 Score=23.62 Aligned_cols=32 Identities=9% Similarity=0.234 Sum_probs=24.0
Q ss_pred CeEEEEEeeC----CCCchhHHHHHHHHhhhhHHHH
Q 044272 31 NWTIIFSHPG----DFTPVCTTELGKMAAYVPEFDK 62 (133)
Q Consensus 31 ~~~vl~f~~~----~~c~~C~~~~~~l~~~~~~~~~ 62 (133)
.+.++.+|.+ ..|+.|.....++.-+.+.+..
T Consensus 60 Nys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~ 95 (331)
T KOG2603|consen 60 NYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRY 95 (331)
T ss_pred CeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhc
Confidence 4666666644 4599999999998888777753
No 332
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=38.69 E-value=87 Score=23.86 Aligned_cols=41 Identities=22% Similarity=0.126 Sum_probs=33.7
Q ss_pred HHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCCC
Q 044272 49 ELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYT 89 (133)
Q Consensus 49 ~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~ 89 (133)
.+..|.++.+++++.|+.++...-++.+.+.+.+++++...
T Consensus 59 l~esL~~L~~~L~~~g~~L~v~~G~~~~vl~~L~~~~~~~~ 99 (429)
T TIGR02765 59 LLESLKDLRTSLRKLGSDLLVRSGKPEDVLPELIKELGVRT 99 (429)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHHhCCCE
Confidence 45788888899999999988888788888888888887653
No 333
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=38.65 E-value=77 Score=18.08 Aligned_cols=17 Identities=24% Similarity=0.133 Sum_probs=12.1
Q ss_pred CCCCchhHHHHHHHHhh
Q 044272 40 GDFTPVCTTELGKMAAY 56 (133)
Q Consensus 40 ~~~c~~C~~~~~~l~~~ 56 (133)
...||.|.+..--|...
T Consensus 24 ~~~sp~~~kv~~~L~~~ 40 (89)
T cd03055 24 MRFCPYAQRARLVLAAK 40 (89)
T ss_pred CCCCchHHHHHHHHHHc
Confidence 45599999876666653
No 334
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions [].; GO: 0016020 membrane; PDB: 3C8C_A 3LIB_D 3LIA_A 3LI8_A 3LI9_A.
Probab=38.61 E-value=25 Score=19.67 Aligned_cols=14 Identities=14% Similarity=0.128 Sum_probs=11.2
Q ss_pred ceeEEEECCCCccC
Q 044272 120 SRALHIVGPDHQVQ 133 (133)
Q Consensus 120 ~p~~~lid~~G~i~ 133 (133)
.-..||+|++|+|+
T Consensus 53 ~g~~~ivd~~G~ii 66 (81)
T PF02743_consen 53 NGYAFIVDKNGTII 66 (81)
T ss_dssp TBEEEEEETTSBBC
T ss_pred CEEEEEEECCCCEE
Confidence 45789999999874
No 335
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=38.59 E-value=1e+02 Score=19.55 Aligned_cols=64 Identities=14% Similarity=0.196 Sum_probs=33.9
Q ss_pred HHHhhhhHHHHcCceEE--EEeCCCHHHHHHHHHhcCCC---CceeeCCcHHHHHHcCCCCCCCCCCCCCCccceeEEEE
Q 044272 52 KMAAYVPEFDKREVKLL--GLSCDDVKSHNEWIKDIEAY---TPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIV 126 (133)
Q Consensus 52 ~l~~~~~~~~~~~v~vv--~is~d~~~~~~~~~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~li 126 (133)
.|.++..+.++.|+.+| ++--++-....+...+.... ..+.- +..+.++|+| ...|+++++
T Consensus 13 ~Lk~l~~~a~~~g~~~VlRG~~~~~~~~T~~~i~~L~~~~~~~~v~I--dP~lF~~f~I------------~~VPa~V~~ 78 (130)
T TIGR02742 13 LLKQLLDQAEALGAPLVIRGLLDNGFKATATRIQSLIKDGGKSGVQI--DPQWFKQFDI------------TAVPAFVVV 78 (130)
T ss_pred HHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHhcCCCCcEEE--ChHHHhhcCc------------eEcCEEEEE
Confidence 34444445555565433 33333433333333333221 24443 4568899999 578998888
Q ss_pred CCC
Q 044272 127 GPD 129 (133)
Q Consensus 127 d~~ 129 (133)
.++
T Consensus 79 ~~~ 81 (130)
T TIGR02742 79 KDG 81 (130)
T ss_pred CCC
Confidence 655
No 336
>PRK10853 putative reductase; Provisional
Probab=38.57 E-value=96 Score=19.15 Aligned_cols=46 Identities=7% Similarity=-0.145 Sum_probs=31.2
Q ss_pred EEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeC----CCHHHHHHHHHhcCCC
Q 044272 36 FSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSC----DDVKSHNEWIKDIEAY 88 (133)
Q Consensus 36 ~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~----d~~~~~~~~~~~~~~~ 88 (133)
.+|....|.-|++.+.-|.+ +|+.+-.+.. -+.+.+.+|.++.|..
T Consensus 3 ~iy~~~~C~t~rkA~~~L~~-------~~i~~~~~d~~k~p~s~~eL~~~l~~~g~~ 52 (118)
T PRK10853 3 TLYGIKNCDTIKKARRWLEA-------QGIDYRFHDYRVDGLDSELLQGFIDELGWE 52 (118)
T ss_pred EEEcCCCCHHHHHHHHHHHH-------cCCCcEEeehccCCcCHHHHHHHHHHcCHH
Confidence 34546669999987766654 3666555553 2678899999887743
No 337
>PLN02945 nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase
Probab=38.23 E-value=1.3e+02 Score=20.98 Aligned_cols=43 Identities=14% Similarity=0.214 Sum_probs=28.3
Q ss_pred ccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEE
Q 044272 25 HDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLL 68 (133)
Q Consensus 25 ~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv 68 (133)
.+. +.+..++.++-|++.|+-..++.-.....+.+...++.+|
T Consensus 15 ~~~-~~~~~~v~i~GGSFdP~H~gHl~ia~~a~~~l~~d~~~~v 57 (236)
T PLN02945 15 NST-GPRTRVVLVATGSFNPPTYMHLRMFELARDALMSEGYHVL 57 (236)
T ss_pred cCc-cCCceEEEEEcCCCCCCcHHHHHHHHHHHHHHhhcCcEEE
Confidence 344 3344445455589999988888777776777765566655
No 338
>PRK08244 hypothetical protein; Provisional
Probab=38.04 E-value=38 Score=26.17 Aligned_cols=34 Identities=15% Similarity=0.344 Sum_probs=25.3
Q ss_pred CCCCCCCCceEEecCCC-eeecccccC-CCeEEEEE
Q 044272 4 LTIGDSVPNLQVQTNQG-NFKLHDFIG-DNWTIIFS 37 (133)
Q Consensus 4 l~~G~~~p~f~l~~~~G-~~~l~d~~~-~~~~vl~f 37 (133)
+.+|..+|+..+...+| ..++.|+.+ +++++|.|
T Consensus 391 ~~~G~r~p~~~~~~~~~~~~~l~~~~~~~~~~ll~~ 426 (493)
T PRK08244 391 PLNGKRLPDLELTLSDGESERLYSLLHKGTFLLLSF 426 (493)
T ss_pred CCCCCCCCCcceecCCCCceeHHHhhcCCeEEEEEe
Confidence 45799999999876677 578888764 45676665
No 339
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=37.62 E-value=65 Score=17.62 Aligned_cols=18 Identities=6% Similarity=-0.234 Sum_probs=13.1
Q ss_pred eeCCCCchhHHHHHHHHh
Q 044272 38 HPGDFTPVCTTELGKMAA 55 (133)
Q Consensus 38 ~~~~~c~~C~~~~~~l~~ 55 (133)
|...+||.|++..-.|..
T Consensus 2 y~~~~Sp~~~kv~~~l~~ 19 (75)
T PF13417_consen 2 YGFPGSPYSQKVRLALEE 19 (75)
T ss_dssp EEETTSHHHHHHHHHHHH
T ss_pred CCcCCChHHHHHHHHHHH
Confidence 345679999988766664
No 340
>PF14062 DUF4253: Domain of unknown function (DUF4253)
Probab=37.27 E-value=72 Score=19.54 Aligned_cols=42 Identities=10% Similarity=0.207 Sum_probs=25.2
Q ss_pred CchhHHHHHHHHhhhhHHHHcCceEEEEeCC-----------CHHHHHHHHHhcCC
Q 044272 43 TPVCTTELGKMAAYVPEFDKREVKLLGLSCD-----------DVKSHNEWIKDIEA 87 (133)
Q Consensus 43 c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d-----------~~~~~~~~~~~~~~ 87 (133)
|+--..++..++..+ +..|+++++++.| +.+...+++.++-.
T Consensus 26 ~~~~~~~~a~lr~W~---er~ga~i~~i~~d~le~~v~~pP~~~~ea~~lA~E~y~ 78 (111)
T PF14062_consen 26 CPDTADIIAVLRYWE---ERYGAEIVGIGFDTLELSVARPPQTPEEAEALAAEHYA 78 (111)
T ss_pred CCCHHHHHHHHHHHH---HHhCEEEEEEECCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 554444444444443 4448999999864 23666777766553
No 341
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=37.07 E-value=25 Score=29.66 Aligned_cols=19 Identities=21% Similarity=0.385 Sum_probs=15.7
Q ss_pred CCCCccceeEEEECCCCcc
Q 044272 114 SGKQLPSRALHIVGPDHQV 132 (133)
Q Consensus 114 ~~~~~~~p~~~lid~~G~i 132 (133)
-|.....|..-++|.+|+|
T Consensus 282 ~~krh~Lp~i~i~d~dG~i 300 (877)
T COG0525 282 VGKRHNLPLINIIDEDGRI 300 (877)
T ss_pred hhhcCCCCceEEECCCCee
Confidence 3555689999999999987
No 342
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=36.89 E-value=84 Score=20.72 Aligned_cols=37 Identities=16% Similarity=0.104 Sum_probs=28.3
Q ss_pred HHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCC
Q 044272 51 GKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEA 87 (133)
Q Consensus 51 ~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~ 87 (133)
+...++.+.++++|+.+..+|..+.+.+....++.+.
T Consensus 95 ~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~gl 131 (198)
T TIGR01428 95 PDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHAGL 131 (198)
T ss_pred CCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHCCC
Confidence 4555666677778899988888777777777787776
No 343
>smart00701 PGRP Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme. The bacteriophage molecule, but not its moth homologue, has been shown to have N-acetylmuramoyl-L-alanine amidase activity. One member of this family, Tag7, is a cytokine.
Probab=36.85 E-value=21 Score=22.92 Aligned_cols=14 Identities=29% Similarity=0.254 Sum_probs=11.3
Q ss_pred cceeEEEECCCCcc
Q 044272 119 PSRALHIVGPDHQV 132 (133)
Q Consensus 119 ~~p~~~lid~~G~i 132 (133)
-+...|+||+||+|
T Consensus 62 DIgYhflI~~dG~I 75 (142)
T smart00701 62 DIGYNFLVGGDGKV 75 (142)
T ss_pred CcCCeEEEcCCCEE
Confidence 36688999999987
No 344
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=36.68 E-value=95 Score=24.76 Aligned_cols=40 Identities=13% Similarity=0.170 Sum_probs=32.1
Q ss_pred HHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCC
Q 044272 49 ELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAY 88 (133)
Q Consensus 49 ~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~ 88 (133)
..+...+..+++++.|+++..+|.|+.....+.+++.+.+
T Consensus 406 l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~lgi~ 445 (562)
T TIGR01511 406 LRPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKELGIN 445 (562)
T ss_pred ccHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHcCCc
Confidence 3455666667778889999999999988888899988875
No 345
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=36.59 E-value=82 Score=26.10 Aligned_cols=40 Identities=10% Similarity=0.069 Sum_probs=30.0
Q ss_pred HHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCCC
Q 044272 50 LGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYT 89 (133)
Q Consensus 50 ~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~ 89 (133)
.+...+..+.+++.|++++.+|-|+.....+.+++.|...
T Consensus 570 r~~a~~~i~~L~~~gi~~~llTGd~~~~a~~ia~~lgi~~ 609 (741)
T PRK11033 570 RADARQAISELKALGIKGVMLTGDNPRAAAAIAGELGIDF 609 (741)
T ss_pred chhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCe
Confidence 4455555566677788888888888888888888888753
No 346
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=36.38 E-value=51 Score=19.94 Aligned_cols=31 Identities=3% Similarity=0.063 Sum_probs=19.1
Q ss_pred HHHhhhhHHHHcCceEEEEeCCCHHHHHHHH
Q 044272 52 KMAAYVPEFDKREVKLLGLSCDDVKSHNEWI 82 (133)
Q Consensus 52 ~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~ 82 (133)
++.+..+..+++|+.+|+|+......+.+++
T Consensus 68 ~~~~~~~~ak~~g~~vi~iT~~~~~~l~~~a 98 (131)
T PF01380_consen 68 ELIELLRFAKERGAPVILITSNSESPLARLA 98 (131)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSTTSHHHHHS
T ss_pred hhhhhhHHHHhcCCeEEEEeCCCCCchhhhC
Confidence 3334444556678999999876555554443
No 347
>TIGR00591 phr2 photolyase PhrII. All proteins in this family for which functions are known are DNA-photolyases used for the direct repair of UV irradiation induced DNA damage. Some repair 6-4 photoproducts while others repair cyclobutane pyrimidine dimers. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=36.38 E-value=1e+02 Score=23.68 Aligned_cols=42 Identities=12% Similarity=0.020 Sum_probs=34.5
Q ss_pred HHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCCC
Q 044272 48 TELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYT 89 (133)
Q Consensus 48 ~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~ 89 (133)
-....|.++.+++++.|+.++...-++.+.+.+.+++++...
T Consensus 75 Fl~esL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~i~~ 116 (454)
T TIGR00591 75 FMLGGLDEVANECERLIIPFHLLDGPPKELLPYFVDLHAAAA 116 (454)
T ss_pred HHHHHHHHHHHHHHHcCCceEEeecChHHHHHHHHHHcCCCE
Confidence 346688888899999999998888888888889988877653
No 348
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=36.34 E-value=79 Score=18.75 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=16.4
Q ss_pred EEEEeCCCHHHHHHHHHhcCCC
Q 044272 67 LLGLSCDDVKSHNEWIKDIEAY 88 (133)
Q Consensus 67 vv~is~d~~~~~~~~~~~~~~~ 88 (133)
.+.+..++.+...+.++..|..
T Consensus 58 ~~~~~v~did~~~~~l~~~G~~ 79 (113)
T cd08356 58 MLHLEVDDLEAYYEHIKALGLP 79 (113)
T ss_pred EEEEEECCHHHHHHHHHHcCCc
Confidence 4567888888887777777764
No 349
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=36.26 E-value=93 Score=25.85 Aligned_cols=34 Identities=12% Similarity=0.041 Sum_probs=26.4
Q ss_pred hhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCCC
Q 044272 56 YVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYT 89 (133)
Q Consensus 56 ~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~ 89 (133)
..+++++.|++++.||-|.+....+.+++.|...
T Consensus 450 aI~~l~~aGI~v~miTGD~~~tA~~IA~~lGI~~ 483 (755)
T TIGR01647 450 TIERARHLGVEVKMVTGDHLAIAKETARRLGLGT 483 (755)
T ss_pred HHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCC
Confidence 3445667788888888888888888888888753
No 350
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=36.09 E-value=68 Score=21.18 Aligned_cols=42 Identities=10% Similarity=0.158 Sum_probs=26.9
Q ss_pred hhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCCCceeeCCc
Q 044272 55 AYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPIIADPN 96 (133)
Q Consensus 55 ~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~ 96 (133)
++.+.|++-|..++.+|..+.+.+.+..+.......++.++.
T Consensus 3 ~~~~~y~~~gy~v~~~S~~~~~g~~~l~~~l~~k~~vl~G~S 44 (161)
T PF03193_consen 3 ELLEQYEKLGYPVFFISAKTGEGIEELKELLKGKTSVLLGQS 44 (161)
T ss_dssp HHHHHHHHTTSEEEE-BTTTTTTHHHHHHHHTTSEEEEECST
T ss_pred HHHHHHHHcCCcEEEEeCCCCcCHHHHHHHhcCCEEEEECCC
Confidence 456677788999999998765555555555554445555533
No 351
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=36.00 E-value=2.4e+02 Score=22.90 Aligned_cols=66 Identities=11% Similarity=0.101 Sum_probs=39.0
Q ss_pred ecccccCCCeEEEEEeeCCCCchhHHHHHHHHhh----------------------hhHHHHcCceEEEEeCCCHHHHHH
Q 044272 23 KLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAY----------------------VPEFDKREVKLLGLSCDDVKSHNE 80 (133)
Q Consensus 23 ~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~----------------------~~~~~~~~v~vv~is~d~~~~~~~ 80 (133)
.+-|++++..+.=+-..--|||+......+..+. .+-.+.+|-++| |-.|+...+++
T Consensus 480 nWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvMNP~KFraCqfLI~~HE~RgDKiI-VFsDnvfALk~ 558 (776)
T KOG1123|consen 480 NWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVMNPNKFRACQFLIKFHERRGDKII-VFSDNVFALKE 558 (776)
T ss_pred cHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeeecCcchhHHHHHHHHHHHhcCCeEE-EEeccHHHHHH
Confidence 4445543333444555577899766554443221 111234566665 45678999999
Q ss_pred HHHhcCCCC
Q 044272 81 WIKDIEAYT 89 (133)
Q Consensus 81 ~~~~~~~~~ 89 (133)
|+.+++.+|
T Consensus 559 YAikl~Kpf 567 (776)
T KOG1123|consen 559 YAIKLGKPF 567 (776)
T ss_pred HHHHcCCce
Confidence 999988655
No 352
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=35.80 E-value=79 Score=21.36 Aligned_cols=34 Identities=12% Similarity=0.121 Sum_probs=20.7
Q ss_pred hhhHHHHcCceEEEEeCCC-----HHHHHHHHHhcCCCC
Q 044272 56 YVPEFDKREVKLLGLSCDD-----VKSHNEWIKDIEAYT 89 (133)
Q Consensus 56 ~~~~~~~~~v~vv~is~d~-----~~~~~~~~~~~~~~~ 89 (133)
+...+..++-+|..||.|+ .+.++.|++..+.++
T Consensus 21 LAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~ 59 (196)
T PF00448_consen 21 LAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPF 59 (196)
T ss_dssp HHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEE
T ss_pred HHHHHhhccccceeecCCCCCccHHHHHHHHHHHhcccc
Confidence 3334444466677777774 577788888888664
No 353
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=35.43 E-value=1.4e+02 Score=22.55 Aligned_cols=62 Identities=11% Similarity=0.246 Sum_probs=31.0
Q ss_pred CCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHH------HHhcCCCCceeeC
Q 044272 29 GDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEW------IKDIEAYTPIIAD 94 (133)
Q Consensus 29 ~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~------~~~~~~~~~~~~d 94 (133)
++.++.+.-...+-..--...+.++.+ +.+.|..++=++..+.+....+ +.+.+.+.|+++|
T Consensus 13 G~~PI~VQSMt~t~t~Dv~atv~QI~~----L~~aGceivRvavp~~~~a~al~~I~~~l~~~g~~iPlVAD 80 (359)
T PF04551_consen 13 GGAPISVQSMTNTDTRDVEATVAQIKR----LEEAGCEIVRVAVPDMEAAEALKEIKKRLRALGSPIPLVAD 80 (359)
T ss_dssp TTS--EEEEE--S-TT-HHHHHHHHHH----HHHCT-SEEEEEE-SHHHHHHHHHHHHHHHCTT-SS-EEEE
T ss_pred CCCCEEEEecCCCCcccHHHHHHHHHH----HHHcCCCEEEEcCCCHHHHHHHHHHHHhhccCCCCCCeeee
Confidence 556888876645433333444444444 4556999999988765544333 3334555699998
No 354
>TIGR01698 PUNP purine nucleotide phosphorylase. methylthioadenosine.
Probab=35.30 E-value=1.2e+02 Score=21.46 Aligned_cols=60 Identities=13% Similarity=0.168 Sum_probs=34.2
Q ss_pred CCCceEEecCCC---eeecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCce-EEEEe
Q 044272 9 SVPNLQVQTNQG---NFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVK-LLGLS 71 (133)
Q Consensus 9 ~~p~f~l~~~~G---~~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~-vv~is 71 (133)
.+|.|-..+..| ++.+..+ +|+++++.. +....+=...+..+......++..|++ +++.+
T Consensus 27 ~ip~fp~~tv~gH~g~l~~G~l-~g~~V~~l~--Gr~H~yeg~~~~~v~~~i~al~~lGv~~ii~tn 90 (237)
T TIGR01698 27 EIPGFPAPTVSGHAGELIRVRI-GDGPVLVLG--GRTHAYEGGDARAVVHPVRTARATGAETLILTN 90 (237)
T ss_pred cCCCCCCCcccCccceEEEEEE-CCEEEEEEc--CCCcccCCCcHHHhHHHHHHHHHcCCCEEEEEc
Confidence 467777766655 5888888 777665554 433222223333334444556667888 44444
No 355
>PRK15062 hydrogenase isoenzymes formation protein HypD; Provisional
Probab=35.09 E-value=35 Score=25.70 Aligned_cols=64 Identities=23% Similarity=0.188 Sum_probs=37.6
Q ss_pred EEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEe-----CCCHHHHHHHHHhcCCCCceeeCCcHHH
Q 044272 35 IFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLS-----CDDVKSHNEWIKDIEAYTPIIADPNREI 99 (133)
Q Consensus 35 l~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is-----~d~~~~~~~~~~~~~~~~~~~~d~~~~~ 99 (133)
+.+..+..||+|-.-...+.+..+--...++.+.... +.+..++ ..++..|.+..+++.+...+
T Consensus 54 ielisGPGCPVCVtp~~~ID~ai~La~~~~vi~~TfGDmlRVPGs~~SL-~~ara~GadVriVYSpldAl 122 (364)
T PRK15062 54 IELIHGPGCPVCVTPMGRIDAAIELASRPGVILCTFGDMLRVPGSKGSL-LEAKAEGADVRIVYSPLDAL 122 (364)
T ss_pred cEEecCCCCCcEeCcHHHHHHHHHHhCCCCeEEEeccccccCCCCcCCH-HHHHhCCCCEEEEeCHHHHH
Confidence 5566799999999999999887654444455554432 1232222 33444455555555544433
No 356
>COG1535 EntB Isochorismate hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=35.01 E-value=36 Score=23.22 Aligned_cols=38 Identities=8% Similarity=0.105 Sum_probs=28.6
Q ss_pred EEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEe
Q 044272 33 TIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLS 71 (133)
Q Consensus 33 ~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is 71 (133)
+.+.|| +..|+.-.....++.++....++.|+.|+.-.
T Consensus 41 YFv~~~-~~~~~~~~~li~Ni~~Lr~~~~~~giPVvyTa 78 (218)
T COG1535 41 YFVSPW-GENCPLMEQLIANIAKLRIWCKQAGIPVVYTA 78 (218)
T ss_pred hhcCCC-CCCCccHHHHHHHHHHHHHHHHHcCCcEEEEe
Confidence 444455 55588778888889998888888999987654
No 357
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=34.89 E-value=1.4e+02 Score=19.84 Aligned_cols=49 Identities=12% Similarity=0.173 Sum_probs=30.2
Q ss_pred HhhhhHHHHcCceEEEEeCCC-HHHHHHHHHhcCCCCceeeCCcHHHHHHc
Q 044272 54 AAYVPEFDKREVKLLGLSCDD-VKSHNEWIKDIEAYTPIIADPNREIIKQL 103 (133)
Q Consensus 54 ~~~~~~~~~~~v~vv~is~d~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 103 (133)
.++.+.+++.|++|..|+..+ .+.+++.++.-|-.+-...|. ..+...|
T Consensus 126 ~~~~~~l~~~~I~v~~IgiG~~~~~L~~ia~~tgG~~~~~~~~-~~l~~~~ 175 (183)
T cd01453 126 YETIDKLKKENIRVSVIGLSAEMHICKEICKATNGTYKVILDE-THLKELL 175 (183)
T ss_pred HHHHHHHHHcCcEEEEEEechHHHHHHHHHHHhCCeeEeeCCH-HHHHHHH
Confidence 344566677788887777654 455777777777665444443 3444443
No 358
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=34.88 E-value=1.8e+02 Score=21.46 Aligned_cols=38 Identities=13% Similarity=0.287 Sum_probs=29.6
Q ss_pred hhHHHHcCceEEEEeCCCHHHHHHHHHhcCCCCceeeC
Q 044272 57 VPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPIIAD 94 (133)
Q Consensus 57 ~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~d 94 (133)
.++++++|+.|+..|.-+...+..+.++.+...++++.
T Consensus 27 L~~Lk~~GI~vVlaTGRt~~ev~~l~~~Lgl~~p~I~e 64 (302)
T PRK12702 27 LAALERRSIPLVLYSLRTRAQLEHLCRQLRLEHPFICE 64 (302)
T ss_pred HHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEEe
Confidence 34456679999988888888899999999887666664
No 359
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=34.86 E-value=78 Score=21.06 Aligned_cols=28 Identities=11% Similarity=0.198 Sum_probs=21.5
Q ss_pred hhHHHHHHHHhhhhHHHHcCceEEEEeC
Q 044272 45 VCTTELGKMAAYVPEFDKREVKLLGLSC 72 (133)
Q Consensus 45 ~C~~~~~~l~~~~~~~~~~~v~vv~is~ 72 (133)
.......++.+..++++++|+.-|+|+.
T Consensus 128 i~~ld~~~v~~~~~~l~~~gv~avAV~~ 155 (176)
T PF05378_consen 128 IEPLDEDEVREALRELKDKGVEAVAVSL 155 (176)
T ss_pred ecCCCHHHHHHHHHHHHhCCCCEEEEEC
Confidence 3445566788888888888999888884
No 360
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=34.75 E-value=1.1e+02 Score=18.84 Aligned_cols=39 Identities=18% Similarity=0.157 Sum_probs=29.3
Q ss_pred HHHHHHHhhhhHHHHcCceEEEEeCC-CHHHHHHHHHhcC
Q 044272 48 TELGKMAAYVPEFDKREVKLLGLSCD-DVKSHNEWIKDIE 86 (133)
Q Consensus 48 ~~~~~l~~~~~~~~~~~v~vv~is~d-~~~~~~~~~~~~~ 86 (133)
...+.+.++.+.++++|+.+..+|.. ..+......+..+
T Consensus 29 ~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~ 68 (128)
T TIGR01681 29 VTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFE 68 (128)
T ss_pred HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhcc
Confidence 45778888888888889998888887 6666656555554
No 361
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=34.37 E-value=38 Score=22.22 Aligned_cols=22 Identities=14% Similarity=0.202 Sum_probs=11.3
Q ss_pred HHHhhhhHHHHcCceEEEEeCC
Q 044272 52 KMAAYVPEFDKREVKLLGLSCD 73 (133)
Q Consensus 52 ~l~~~~~~~~~~~v~vv~is~d 73 (133)
++.+..+..+++|+.+|+|+..
T Consensus 116 ~~i~~~~~ak~~Ga~vI~IT~~ 137 (177)
T cd05006 116 NVLKALEAAKERGMKTIALTGR 137 (177)
T ss_pred HHHHHHHHHHHCCCEEEEEeCC
Confidence 3333344445556666666644
No 362
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type. This model describes a narrow clade of cyanobacterial deoxyribodipyrimidine photo-lyase. This group, in contrast to several closely related proteins, uses a chromophore that, in other lineages is modified further to become coenzyme F420. This chromophore is called 8-HDF in most articles on the DNA photolyase and FO in most literature on coenzyme F420.
Probab=34.25 E-value=1.1e+02 Score=23.74 Aligned_cols=43 Identities=16% Similarity=0.198 Sum_probs=35.5
Q ss_pred HHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCCC
Q 044272 47 TTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYT 89 (133)
Q Consensus 47 ~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~ 89 (133)
.-.+..|.++.+++++.|+.++...-++.+.+.+++++.+...
T Consensus 51 ~Fl~esL~~L~~~L~~~G~~L~v~~G~p~~vl~~l~~~~~~~~ 93 (471)
T TIGR03556 51 AYLIGCLQELQQRYQQAGSQLLILQGDPVQLIPQLAQQLGAKA 93 (471)
T ss_pred HHHHHHHHHHHHHHHHCCCCeEEEECCHHHHHHHHHHHcCCCE
Confidence 4467888999999999999988888788888888888877654
No 363
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=33.98 E-value=1.5e+02 Score=19.95 Aligned_cols=39 Identities=10% Similarity=0.184 Sum_probs=28.3
Q ss_pred hhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCC-Cceee
Q 044272 55 AYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAY-TPIIA 93 (133)
Q Consensus 55 ~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~-~~~~~ 93 (133)
+..++++++|+.++.+|--+...+..+.+..+.. .++++
T Consensus 23 ~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l~~~~~~~I~ 62 (221)
T TIGR02463 23 PWLTRLQEAGIPVILCTSKTAAEVEYLQKALGLTGDPYIA 62 (221)
T ss_pred HHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCCCCcEEE
Confidence 3344456679999988888888888888888865 33443
No 364
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=33.90 E-value=1.2e+02 Score=21.27 Aligned_cols=40 Identities=10% Similarity=-0.072 Sum_probs=28.7
Q ss_pred HHHHHhhhhHHHHcCceEEEEeCCCH---HHHHHHHHhcCCCC
Q 044272 50 LGKMAAYVPEFDKREVKLLGLSCDDV---KSHNEWIKDIEAYT 89 (133)
Q Consensus 50 ~~~l~~~~~~~~~~~v~vv~is~d~~---~~~~~~~~~~~~~~ 89 (133)
++...++++.++++|+.|+.+|-=+. +...+++.+.|.+.
T Consensus 122 ip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~~G~~~ 164 (229)
T TIGR01675 122 LPEGLKLYQKIIELGIKIFLLSGRWEELRNATLDNLINAGFTG 164 (229)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHHcCCCC
Confidence 45556677777888999999986433 33567888888773
No 365
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=33.81 E-value=1e+02 Score=19.89 Aligned_cols=36 Identities=6% Similarity=0.100 Sum_probs=24.4
Q ss_pred HHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCC
Q 044272 53 MAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAY 88 (133)
Q Consensus 53 l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~ 88 (133)
+.++.+.++++|+.+..+|...........++++..
T Consensus 77 ~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~ 112 (188)
T TIGR01489 77 FKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGIGEK 112 (188)
T ss_pred HHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHcCCh
Confidence 444556666778888878877777677777766653
No 366
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=33.68 E-value=1.5e+02 Score=21.87 Aligned_cols=40 Identities=18% Similarity=0.132 Sum_probs=32.4
Q ss_pred HHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCCC
Q 044272 50 LGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYT 89 (133)
Q Consensus 50 ~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~ 89 (133)
-+.+.+..++++++|+.+..+|..+.+...+..++.|...
T Consensus 148 dPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~lGLd~ 187 (301)
T TIGR01684 148 DPRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKVKLDR 187 (301)
T ss_pred CHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCCCc
Confidence 4677788888888899988888777777778888888874
No 367
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=33.65 E-value=1.3e+02 Score=19.27 Aligned_cols=45 Identities=18% Similarity=0.216 Sum_probs=30.6
Q ss_pred CCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCH
Q 044272 29 GDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDV 75 (133)
Q Consensus 29 ~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~ 75 (133)
..+.+++-|- -.|-|.|..+=.-|.+..+..++- ..+..+..+..
T Consensus 19 ~drvvViRFG-~d~d~~Cm~mDeiL~~~a~~v~~~-a~IY~vDi~~V 63 (133)
T PF02966_consen 19 EDRVVVIRFG-RDWDPVCMQMDEILYKIAEKVKNF-AVIYLVDIDEV 63 (133)
T ss_dssp SSSEEEEEEE--TTSHHHHHHHHHHHHHHHHHTTT-EEEEEEETTTT
T ss_pred CceEEEEEeC-CCCCccHHHHHHHHHHHHHHhhcc-eEEEEEEcccc
Confidence 4566777776 567999998888888877766533 55666666643
No 368
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=33.51 E-value=1.2e+02 Score=18.63 Aligned_cols=9 Identities=11% Similarity=0.438 Sum_probs=4.3
Q ss_pred HHHHHHcCC
Q 044272 97 REIIKQLNM 105 (133)
Q Consensus 97 ~~~~~~~~~ 105 (133)
.++.+.||+
T Consensus 72 ~~L~~r~gv 80 (107)
T PF07449_consen 72 RALAARFGV 80 (107)
T ss_dssp HHHHHHHT-
T ss_pred HHHHHHhCC
Confidence 345555666
No 369
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=33.42 E-value=94 Score=25.79 Aligned_cols=49 Identities=14% Similarity=0.326 Sum_probs=33.6
Q ss_pred hhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCCC---ceeeCCcHHHHHHc
Q 044272 55 AYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYT---PIIADPNREIIKQL 103 (133)
Q Consensus 55 ~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~---~~~~d~~~~~~~~~ 103 (133)
+..+++++.|++++.+|-|+....++.+++.|.+. .++.+.+-+.-+.+
T Consensus 544 ~aI~~L~~~Gi~~~mLTGDn~~~A~~iA~~lGId~v~AellPedK~~~V~~l 595 (713)
T COG2217 544 EAIAALKALGIKVVMLTGDNRRTAEAIAKELGIDEVRAELLPEDKAEIVREL 595 (713)
T ss_pred HHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcChHhheccCCcHHHHHHHHHH
Confidence 33445677799999999999999999999988643 34433343444444
No 370
>TIGR00075 hypD hydrogenase expression/formation protein HypD. HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes. This protein has been found in gram-negative and gram-positive bacteria and Archaea.
Probab=33.27 E-value=39 Score=25.47 Aligned_cols=84 Identities=17% Similarity=0.196 Sum_probs=45.7
Q ss_pred ceEEecCCC--eeec-----ccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEe-----CCCHHHHH
Q 044272 12 NLQVQTNQG--NFKL-----HDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLS-----CDDVKSHN 79 (133)
Q Consensus 12 ~f~l~~~~G--~~~l-----~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is-----~d~~~~~~ 79 (133)
.+++...=| +.+. .++.... +.+..+..||+|-.-...+.+..+--...++.+.... +.+..++
T Consensus 33 p~~iMeVCGtHt~aI~r~Gir~LLp~~---IelisGPGCPVCVtp~~~ID~ai~LA~~~~vii~TfGDmlRVPGs~~SL- 108 (369)
T TIGR00075 33 PLKIMEVCGGHTHTIMKYGLRDLLPEN---LELVHGPGCPVCVTPMERIDEAIELATIPEIIFCTFGDMMRVPGSGGSL- 108 (369)
T ss_pred CeEEEEeCCCchHHHHHhChHhhCCCC---cEEecCCCCCcEeCcHHHHHHHHHHhCCCCeEEEecchhccCCCCCCCH-
Confidence 356666544 4333 3333333 5666799999999999888876654434455554433 1222222
Q ss_pred HHHHhcCCCCceeeCCcHHH
Q 044272 80 EWIKDIEAYTPIIADPNREI 99 (133)
Q Consensus 80 ~~~~~~~~~~~~~~d~~~~~ 99 (133)
.-++..|.+..+++.+...+
T Consensus 109 ~~ara~GadVriVYSpldAl 128 (369)
T TIGR00075 109 LQARAEGADVRIVYSPMDAL 128 (369)
T ss_pred HHHHhCCCCEEEEeCHHHHH
Confidence 23344455555555544433
No 371
>COG3695 Predicted methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]
Probab=33.22 E-value=25 Score=21.40 Aligned_cols=26 Identities=23% Similarity=0.391 Sum_probs=20.9
Q ss_pred CCCCCCCCCCCceEEecCCCeeeccc
Q 044272 1 MPGLTIGDSVPNLQVQTNQGNFKLHD 26 (133)
Q Consensus 1 m~~l~~G~~~p~f~l~~~~G~~~l~d 26 (133)
|..+..|+.+|-..+.+.+|++++.+
T Consensus 46 l~~l~~~s~lPWhRVvns~G~isl~~ 71 (103)
T COG3695 46 LKHLPEGSDLPWHRVVNSDGRISLPG 71 (103)
T ss_pred HhhCCCCCCCChhheecCCCcccCCC
Confidence 34467899999999999999888763
No 372
>TIGR02000 NifU_proper Fe-S cluster assembly protein NifU. Three different but partially homologous Fe-S cluster assembly systems have been described: Isc, Suf, and Nif. The latter is associated with donation of an Fe-S cluster to nitrogenase in a number of nitrogen-fixing species. NifU, described here, consists of an N-terminal domain (pfam01592) and a C-terminal domain (pfam01106). Homologs with an equivalent domain archictecture from Helicobacter and Campylobacter, however, are excluded from this model by a high trusted cutoff. The model, therefore, is specific for NifU involved in nitrogenase maturation. The related model TIGR01999 homologous to the N-terminus of this model describes IscU from the Isc system as in E. coli, Saccharomyces cerevisiae, and Homo sapiens.
Probab=33.18 E-value=99 Score=22.52 Aligned_cols=40 Identities=13% Similarity=0.260 Sum_probs=23.1
Q ss_pred CeeecccccCCCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHH
Q 044272 20 GNFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDK 62 (133)
Q Consensus 20 G~~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~ 62 (133)
|.+.+-++ .+..+.|-| .+. |..|....-.|..+.+.+++
T Consensus 240 Gdv~lv~v-~~~~v~v~l-~Ga-C~gC~~s~~Tl~~Ie~~l~~ 279 (290)
T TIGR02000 240 GDVELYDV-DGKIVYVVL-TGA-CSGCSMSTMTLKGIQQRLRE 279 (290)
T ss_pred CcEEEEEE-eCCEEEEEE-eeC-CCCCcchHHHHHHHHHHHHH
Confidence 48888888 555454544 365 55565555555545555543
No 373
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=33.03 E-value=50 Score=23.91 Aligned_cols=20 Identities=20% Similarity=0.325 Sum_probs=13.1
Q ss_pred CCCchhHHHHHHHHhhhhHHH
Q 044272 41 DFTPVCTTELGKMAAYVPEFD 61 (133)
Q Consensus 41 ~~c~~C~~~~~~l~~~~~~~~ 61 (133)
+|||.|-... -++.+.+.+.
T Consensus 18 ~~CpGCg~~~-il~~l~~al~ 37 (286)
T PRK11867 18 RWCPGCGDGS-ILAALQRALA 37 (286)
T ss_pred CcCCCCCCHH-HHHHHHHHHH
Confidence 4899997665 5555555554
No 374
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=32.84 E-value=2e+02 Score=21.99 Aligned_cols=34 Identities=9% Similarity=0.133 Sum_probs=26.4
Q ss_pred hhhHHHHcC-ceEEEEeC-CCHHHHHHHHHhcCCCC
Q 044272 56 YVPEFDKRE-VKLLGLSC-DDVKSHNEWIKDIEAYT 89 (133)
Q Consensus 56 ~~~~~~~~~-v~vv~is~-d~~~~~~~~~~~~~~~~ 89 (133)
..++.++.| ++.++.|. |+.+...+....+.++|
T Consensus 135 f~~kak~eGkIr~~GFSfHgs~e~~~~iv~a~~~df 170 (391)
T COG1453 135 FLEKAKAEGKIRNAGFSFHGSTEVFKEIVDAYPWDF 170 (391)
T ss_pred HHHHHHhcCcEEEeeecCCCCHHHHHHHHhcCCcce
Confidence 345555555 77899986 78999999999998887
No 375
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=32.71 E-value=1.1e+02 Score=19.62 Aligned_cols=31 Identities=10% Similarity=-0.024 Sum_probs=17.1
Q ss_pred hHHHHcCceEEEEeCCCHHHHHHHHHhcCCC
Q 044272 58 PEFDKREVKLLGLSCDDVKSHNEWIKDIEAY 88 (133)
Q Consensus 58 ~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~ 88 (133)
++++++|+++..+|..+.....+.+++++..
T Consensus 38 ~~Lk~~G~~i~IvTn~~~~~~~~~l~~~gi~ 68 (154)
T TIGR01670 38 RCALKSGIEVAIITGRKAKLVEDRCKTLGIT 68 (154)
T ss_pred HHHHHCCCEEEEEECCCCHHHHHHHHHcCCC
Confidence 3444556666666665555555555555543
No 376
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=32.60 E-value=79 Score=23.02 Aligned_cols=77 Identities=13% Similarity=0.163 Sum_probs=36.2
Q ss_pred HHHhhhhHHHHcCc-eEEEEeCCCHHHHHHHHHhc---CCCC---ceeeCCcHHHHHHcCCCCCCCCCCCCCCc-cceeE
Q 044272 52 KMAAYVPEFDKREV-KLLGLSCDDVKSHNEWIKDI---EAYT---PIIADPNREIIKQLNMVDPDEKDSSGKQL-PSRAL 123 (133)
Q Consensus 52 ~l~~~~~~~~~~~v-~vv~is~d~~~~~~~~~~~~---~~~~---~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~ 123 (133)
.+.+..+.+++.+. -||+|.-.+.-...+++... +.+. |-.+....++...-.++..+ ....+... ..|..
T Consensus 66 ~v~~~~~~~~~~~~d~IIaiGGGs~~D~aK~ia~~~~~~~p~i~iPTt~~tgse~t~~avi~~~~-~~K~~~~~~~~P~~ 144 (332)
T cd07766 66 EVKEAVERARAAEVDAVIAVGGGSTLDTAKAVAALLNRGLPIIIVPTTAATGSEVSPKAVITDKE-GGKTGFFYPDNPDV 144 (332)
T ss_pred HHHHHHHHHHhcCcCEEEEeCCchHHHHHHHHHHHhcCCCCEEEEeCCCchhhccCCeEEEEeCC-CceEEeccCCccCE
Confidence 33444444443333 37788776666665554333 3443 22222223333333333321 11122111 27889
Q ss_pred EEECCC
Q 044272 124 HIVGPD 129 (133)
Q Consensus 124 ~lid~~ 129 (133)
.++|++
T Consensus 145 vi~Dp~ 150 (332)
T cd07766 145 VFVDTD 150 (332)
T ss_pred EEEChh
Confidence 999986
No 377
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=32.53 E-value=53 Score=19.48 Aligned_cols=27 Identities=15% Similarity=0.247 Sum_probs=19.1
Q ss_pred CCCchhHHH-HHHHHhhhhHHHHcCceE
Q 044272 41 DFTPVCTTE-LGKMAAYVPEFDKREVKL 67 (133)
Q Consensus 41 ~~c~~C~~~-~~~l~~~~~~~~~~~v~v 67 (133)
+.||.-..+ ..++.+..+.++++|+++
T Consensus 64 nDcpeA~~eL~~eI~eAK~dLr~kGv~~ 91 (91)
T PF08285_consen 64 NDCPEAAKELQKEIKEAKADLRKKGVDV 91 (91)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 347766555 477788888888888763
No 378
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=32.49 E-value=48 Score=21.03 Aligned_cols=33 Identities=18% Similarity=0.351 Sum_probs=24.7
Q ss_pred CceEEEEeCC-CHHHHHHHHHhcCCCCceeeCCc
Q 044272 64 EVKLLGLSCD-DVKSHNEWIKDIEAYTPIIADPN 96 (133)
Q Consensus 64 ~v~vv~is~d-~~~~~~~~~~~~~~~~~~~~d~~ 96 (133)
.++|++++.. +.+.+.+.+++++..+.++.|+.
T Consensus 24 ~f~v~~Lsa~~n~~~L~~q~~~f~p~~v~i~~~~ 57 (129)
T PF02670_consen 24 KFEVVALSAGSNIEKLAEQAREFKPKYVVIADEE 57 (129)
T ss_dssp TEEEEEEEESSTHHHHHHHHHHHT-SEEEESSHH
T ss_pred ceEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHH
Confidence 4888888875 57888888999887667777644
No 379
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=32.45 E-value=1.6e+02 Score=19.77 Aligned_cols=33 Identities=9% Similarity=0.071 Sum_probs=21.5
Q ss_pred hhHHHHcCceEEEEeCCCHHHHHHHHHhcCCCC
Q 044272 57 VPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYT 89 (133)
Q Consensus 57 ~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~ 89 (133)
..+++++|+.++..|--+...+.++.+.++.+.
T Consensus 24 l~~l~~~Gi~~~~aTGR~~~~~~~~~~~l~~~~ 56 (225)
T TIGR01482 24 IRKAESVGIPVVLVTGNSVQFARALAKLIGTPD 56 (225)
T ss_pred HHHHHHCCCEEEEEcCCchHHHHHHHHHhCCCC
Confidence 344556788877777666666677777777443
No 380
>KOG1842 consensus FYVE finger-containing protein [General function prediction only]
Probab=32.39 E-value=30 Score=26.76 Aligned_cols=20 Identities=25% Similarity=0.625 Sum_probs=18.3
Q ss_pred CCchhHHHHHHHHhhhhHHH
Q 044272 42 FTPVCTTELGKMAAYVPEFD 61 (133)
Q Consensus 42 ~c~~C~~~~~~l~~~~~~~~ 61 (133)
-||+|...+++|..+-+.++
T Consensus 17 lCPiC~~dl~~~~~L~~H~d 36 (505)
T KOG1842|consen 17 LCPICLLDLPNLSALNDHLD 36 (505)
T ss_pred cCchHhhhhhhHHHHHHHHh
Confidence 59999999999999988886
No 381
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=32.36 E-value=1.2e+02 Score=18.51 Aligned_cols=50 Identities=14% Similarity=0.205 Sum_probs=33.7
Q ss_pred cCceEEEEeCCCHHHHHHHHHhcCCCCceeeCCcHHHHHHcCCCCCCCCCCCCCCccceeEEEECCCCcc
Q 044272 63 REVKLLGLSCDDVKSHNEWIKDIEAYTPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQV 132 (133)
Q Consensus 63 ~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i 132 (133)
.|+.-+++.+++.+...+.+.+.|..+ +..+.. .. ......|+-||+|.+
T Consensus 86 ~g~~hia~~v~d~d~~~~~l~~~G~~~--~~~~~~-----~~-------------~~~r~~~~~DPdG~~ 135 (142)
T cd08353 86 LGLRRVMFAVDDIDARVARLRKHGAEL--VGEVVQ-----YE-------------NSYRLCYIRGPEGIL 135 (142)
T ss_pred CCceEEEEEeCCHHHHHHHHHHCCCce--eCCcee-----cC-------------CCeEEEEEECCCCCE
Confidence 467778999999998888888888654 211100 00 125567889999975
No 382
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=32.24 E-value=1.8e+02 Score=20.35 Aligned_cols=45 Identities=9% Similarity=-0.068 Sum_probs=32.7
Q ss_pred chhHHHHHHHHhhhhHHHHcCceEEEEeCC-CHHHHHHHHHhcCCCC
Q 044272 44 PVCTTELGKMAAYVPEFDKREVKLLGLSCD-DVKSHNEWIKDIEAYT 89 (133)
Q Consensus 44 ~~C~~~~~~l~~~~~~~~~~~v~vv~is~d-~~~~~~~~~~~~~~~~ 89 (133)
|.|-+.+-.++-+++..+ .|-.++.||.+ +++.+.+.+..+++++
T Consensus 32 pGsGKT~f~~qfl~~~~~-~ge~vlyvs~~e~~~~l~~~~~~~g~d~ 77 (260)
T COG0467 32 PGTGKTIFALQFLYEGAR-EGEPVLYVSTEESPEELLENARSFGWDL 77 (260)
T ss_pred CCCcHHHHHHHHHHHHHh-cCCcEEEEEecCCHHHHHHHHHHcCCCH
Confidence 556566666655544444 38889999986 7888888888888876
No 383
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=32.22 E-value=58 Score=19.22 Aligned_cols=46 Identities=9% Similarity=0.049 Sum_probs=25.3
Q ss_pred CCchhHHHHHHHHhhhhHHHHcCce--EEEEeCCCHHHHHHHHHhcCCC-CceeeCCc
Q 044272 42 FTPVCTTELGKMAAYVPEFDKREVK--LLGLSCDDVKSHNEWIKDIEAY-TPIIADPN 96 (133)
Q Consensus 42 ~c~~C~~~~~~l~~~~~~~~~~~v~--vv~is~d~~~~~~~~~~~~~~~-~~~~~d~~ 96 (133)
.||.|++..-.|.+. |+. ++-|..+... ..|.+.+-.. .|++.|.+
T Consensus 21 ~cpf~~rvrl~L~eK-------gi~ye~~~vd~~~~p--~~~~~~nP~g~vPvL~~~~ 69 (91)
T cd03061 21 NCPFCQRLFMVLWLK-------GVVFNVTTVDMKRKP--EDLKDLAPGTQPPFLLYNG 69 (91)
T ss_pred CChhHHHHHHHHHHC-------CCceEEEEeCCCCCC--HHHHHhCCCCCCCEEEECC
Confidence 499999988888764 444 5555543311 2243332221 27777644
No 384
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=32.11 E-value=1.3e+02 Score=23.92 Aligned_cols=41 Identities=10% Similarity=0.116 Sum_probs=32.7
Q ss_pred HHHHHHhhhhHHHHcC-ceEEEEeCCCHHHHHHHHHhcCCCC
Q 044272 49 ELGKMAAYVPEFDKRE-VKLLGLSCDDVKSHNEWIKDIEAYT 89 (133)
Q Consensus 49 ~~~~l~~~~~~~~~~~-v~vv~is~d~~~~~~~~~~~~~~~~ 89 (133)
..+...+..+.++++| +++..+|-|+.....+.+++.+.+.
T Consensus 385 ~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~~~lgi~~ 426 (556)
T TIGR01525 385 LRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAELGIDE 426 (556)
T ss_pred chHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHHHHhCCCe
Confidence 4566677777778888 8998899998888888888888753
No 385
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=31.39 E-value=1.2e+02 Score=20.35 Aligned_cols=38 Identities=3% Similarity=-0.047 Sum_probs=23.3
Q ss_pred HHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCC
Q 044272 51 GKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAY 88 (133)
Q Consensus 51 ~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~ 88 (133)
+.+.++.+.+++.|+.+..+|...........++.+..
T Consensus 96 ~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~ 133 (226)
T PRK13222 96 PGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEALGIA 133 (226)
T ss_pred CCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCc
Confidence 33444455555667777777766666666666666653
No 386
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=31.36 E-value=1.9e+02 Score=20.53 Aligned_cols=35 Identities=9% Similarity=0.018 Sum_probs=17.7
Q ss_pred HHHHcCceEEEEeCCC-----HHHHHHHHHhcCCCCceeeC
Q 044272 59 EFDKREVKLLGLSCDD-----VKSHNEWIKDIEAYTPIIAD 94 (133)
Q Consensus 59 ~~~~~~v~vv~is~d~-----~~~~~~~~~~~~~~~~~~~d 94 (133)
.+++.|..++.++-.+ .+...+..++.+.+ -++.|
T Consensus 48 ~i~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d-~vV~D 87 (279)
T TIGR03590 48 LLLSAGFPVYELPDESSRYDDALELINLLEEEKFD-ILIVD 87 (279)
T ss_pred HHHHcCCeEEEecCCCchhhhHHHHHHHHHhcCCC-EEEEc
Confidence 3445677777775422 23344555554433 44444
No 387
>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=31.03 E-value=1.2e+02 Score=21.35 Aligned_cols=44 Identities=16% Similarity=0.155 Sum_probs=33.7
Q ss_pred hhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCCC
Q 044272 45 VCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYT 89 (133)
Q Consensus 45 ~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~ 89 (133)
-|..+...|.+..+.+++.|++| ++-.|+....-+.+.+.|.++
T Consensus 105 D~~~~~~~l~~~v~~L~~~GirV-SLFiD~d~~qi~aa~~~gA~~ 148 (243)
T COG0854 105 DVAGQLDKLRDAVRRLKNAGIRV-SLFIDPDPEQIEAAAEVGAPR 148 (243)
T ss_pred hhhhhhhhHHHHHHHHHhCCCeE-EEEeCCCHHHHHHHHHhCCCE
Confidence 46677888888899999999885 555566566667788888877
No 388
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=30.97 E-value=76 Score=17.54 Aligned_cols=21 Identities=5% Similarity=0.146 Sum_probs=14.6
Q ss_pred HHHHhhhhHHHHcCceEEEEe
Q 044272 51 GKMAAYVPEFDKREVKLLGLS 71 (133)
Q Consensus 51 ~~l~~~~~~~~~~~v~vv~is 71 (133)
+++.+..+..+++|..+++|+
T Consensus 61 ~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 61 EELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred HHHHHHHHHHHHcCCeEEEEe
Confidence 344445556677899999988
No 389
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=30.94 E-value=1.2e+02 Score=20.26 Aligned_cols=38 Identities=11% Similarity=-0.074 Sum_probs=25.4
Q ss_pred HHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCC
Q 044272 51 GKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAY 88 (133)
Q Consensus 51 ~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~ 88 (133)
+...++.+.++++|+.+..+|...........+..+..
T Consensus 85 ~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~gl~ 122 (214)
T PRK13288 85 ETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLTGLD 122 (214)
T ss_pred cCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCh
Confidence 44556666667777777777777666666666666654
No 390
>PRK10867 signal recognition particle protein; Provisional
Probab=30.90 E-value=2.6e+02 Score=21.75 Aligned_cols=55 Identities=24% Similarity=0.176 Sum_probs=29.5
Q ss_pred CeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHc-CceEEEEeCCC-----HHHHHHHHHhcCCCC
Q 044272 31 NWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKR-EVKLLGLSCDD-----VKSHNEWIKDIEAYT 89 (133)
Q Consensus 31 ~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~-~v~vv~is~d~-----~~~~~~~~~~~~~~~ 89 (133)
++.++.|. +.....=+.....|.. .+... |..+..|+.|+ .+.++.|+++.+.++
T Consensus 99 ~p~vI~~v-G~~GsGKTTtaakLA~---~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v 159 (433)
T PRK10867 99 PPTVIMMV-GLQGAGKTTTAGKLAK---YLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPV 159 (433)
T ss_pred CCEEEEEE-CCCCCcHHHHHHHHHH---HHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeE
Confidence 35555554 4322222333344443 34444 77888888884 334556777766553
No 391
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=30.81 E-value=1.2e+02 Score=25.91 Aligned_cols=37 Identities=11% Similarity=0.111 Sum_probs=29.5
Q ss_pred HHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCC
Q 044272 52 KMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAY 88 (133)
Q Consensus 52 ~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~ 88 (133)
+..+..+++++.|++++.||-|.+....+.+++.|..
T Consensus 554 ~a~~aI~~l~~aGI~v~miTGD~~~tA~aIA~~lGI~ 590 (903)
T PRK15122 554 SAAPAIAALRENGVAVKVLTGDNPIVTAKICREVGLE 590 (903)
T ss_pred HHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCC
Confidence 3444455667789999999999999999999998875
No 392
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=30.80 E-value=52 Score=21.50 Aligned_cols=24 Identities=8% Similarity=-0.065 Sum_probs=19.5
Q ss_pred EeeCCCCchhHHHHHHHHhhhhHH
Q 044272 37 SHPGDFTPVCTTELGKMAAYVPEF 60 (133)
Q Consensus 37 f~~~~~c~~C~~~~~~l~~~~~~~ 60 (133)
||+-.-||.|-.-.+.|.++.+.+
T Consensus 3 ~~~D~~cP~cy~~~~~l~~~~~~~ 26 (192)
T cd03022 3 FYFDFSSPYSYLAHERLPALAARH 26 (192)
T ss_pred EEEeCCChHHHHHHHHHHHHHHHh
Confidence 455666999999999999887766
No 393
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=30.65 E-value=1.6e+02 Score=21.67 Aligned_cols=40 Identities=13% Similarity=0.001 Sum_probs=31.9
Q ss_pred HHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCCC
Q 044272 50 LGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYT 89 (133)
Q Consensus 50 ~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~ 89 (133)
.+.+.+..++++++|..+..+|..+.+.+.+..++.+...
T Consensus 150 dp~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~lgL~~ 189 (303)
T PHA03398 150 DPFVYDSLDELKERGCVLVLWSYGNREHVVHSLKETKLEG 189 (303)
T ss_pred ChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHcCCCc
Confidence 4667777788888899988888777788888888888864
No 394
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=30.58 E-value=63 Score=19.21 Aligned_cols=40 Identities=8% Similarity=0.060 Sum_probs=24.2
Q ss_pred HHHHHhhhhHHHHcCceEEEEeCC---CHHHHHHHHHhcCCCC
Q 044272 50 LGKMAAYVPEFDKREVKLLGLSCD---DVKSHNEWIKDIEAYT 89 (133)
Q Consensus 50 ~~~l~~~~~~~~~~~v~vv~is~d---~~~~~~~~~~~~~~~~ 89 (133)
+|.-.+..+.++++|..++.+|-. +++...+..+++|.+.
T Consensus 16 ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~ 58 (101)
T PF13344_consen 16 IPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPV 58 (101)
T ss_dssp -TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT-
T ss_pred CcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCC
Confidence 344455556667778888888864 3455666667777664
No 395
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=30.46 E-value=1.5e+02 Score=18.98 Aligned_cols=54 Identities=15% Similarity=0.266 Sum_probs=34.6
Q ss_pred CCeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCC
Q 044272 30 DNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAY 88 (133)
Q Consensus 30 ~~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~ 88 (133)
.+.+|+-|- -.|-|.|..+-.-|.+..+...+- ..|..+-.| ++..|.+-++..
T Consensus 23 ~rlvViRFG-r~~Dp~C~~mD~~L~~i~~~vsnf-a~Iylvdid---eV~~~~~~~~l~ 76 (142)
T KOG3414|consen 23 ERLVVIRFG-RDWDPTCMKMDELLSSIAEDVSNF-AVIYLVDID---EVPDFVKMYELY 76 (142)
T ss_pred ceEEEEEec-CCCCchHhhHHHHHHHHHHHHhhc-eEEEEEecc---hhhhhhhhhccc
Confidence 355666665 678999999888888887777643 445555555 334454444443
No 396
>COG1503 eRF1 Peptide chain release factor 1 (eRF1) [Translation, ribosomal structure and biogenesis]
Probab=30.35 E-value=93 Score=23.96 Aligned_cols=21 Identities=14% Similarity=0.009 Sum_probs=11.9
Q ss_pred hhHHHHcCceEEEEeCCCHHH
Q 044272 57 VPEFDKREVKLLGLSCDDVKS 77 (133)
Q Consensus 57 ~~~~~~~~v~vv~is~d~~~~ 77 (133)
.+..++.|.++..||.++.+.
T Consensus 371 ~e~a~~~Ga~ve~is~~~~eg 391 (411)
T COG1503 371 AELAEESGAKVEIISDDTDEG 391 (411)
T ss_pred HHHHHhcCCeEEEecCchHHH
Confidence 334445566676676665443
No 397
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=30.09 E-value=67 Score=20.72 Aligned_cols=26 Identities=12% Similarity=0.298 Sum_probs=17.2
Q ss_pred eecccccCCCeEEEEEeeC--CCCchhHH
Q 044272 22 FKLHDFIGDNWTIIFSHPG--DFTPVCTT 48 (133)
Q Consensus 22 ~~l~d~~~~~~~vl~f~~~--~~c~~C~~ 48 (133)
+++.|+ .++..++.|+.+ -.|++|..
T Consensus 7 ~~~~d~-p~~~~~~vfl~GCnlrC~~C~n 34 (147)
T TIGR02826 7 IVFQEV-PNEYSLAFYITGCPLGCKGCHS 34 (147)
T ss_pred EEEeec-CCCEEEEEEeCCCCCCCCCCCC
Confidence 577888 777677776632 23888844
No 398
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=29.97 E-value=1e+02 Score=18.03 Aligned_cols=12 Identities=17% Similarity=0.465 Sum_probs=9.5
Q ss_pred eeEEEECCCCcc
Q 044272 121 RALHIVGPDHQV 132 (133)
Q Consensus 121 p~~~lid~~G~i 132 (133)
...++.||+|..
T Consensus 100 ~~~~~~DP~G~~ 111 (120)
T cd08362 100 YGFRFFDPDGRL 111 (120)
T ss_pred eEEEEECCCCCE
Confidence 367889999975
No 399
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=29.87 E-value=1.9e+02 Score=19.89 Aligned_cols=39 Identities=10% Similarity=0.183 Sum_probs=28.0
Q ss_pred hhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCCCceee
Q 044272 55 AYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPIIA 93 (133)
Q Consensus 55 ~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~ 93 (133)
+..++++++|+.++..|.-+......+.++.+...++++
T Consensus 22 ~ai~~l~~~G~~~vi~TgR~~~~~~~~~~~lg~~~~~I~ 60 (225)
T TIGR02461 22 EALEELKDLGFPIVFVSSKTRAEQEYYREELGVEPPFIV 60 (225)
T ss_pred HHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCCCcEEE
Confidence 334455667999888888888888889988886444443
No 400
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=29.74 E-value=1.3e+02 Score=25.60 Aligned_cols=36 Identities=8% Similarity=0.057 Sum_probs=29.2
Q ss_pred HHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCC
Q 044272 53 MAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAY 88 (133)
Q Consensus 53 l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~ 88 (133)
..+..+++++.|++++.||-|.+....+.+++.|..
T Consensus 520 ~~~aI~~l~~aGI~vvmiTGD~~~tA~aIA~~lGI~ 555 (867)
T TIGR01524 520 TKEAIAALFKNGINVKVLTGDNEIVTARICQEVGID 555 (867)
T ss_pred HHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC
Confidence 334445667789999999999999999999999985
No 401
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=29.72 E-value=1.8e+02 Score=19.53 Aligned_cols=34 Identities=9% Similarity=0.013 Sum_probs=22.0
Q ss_pred hhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCCC
Q 044272 56 YVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYT 89 (133)
Q Consensus 56 ~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~ 89 (133)
..++++++|+.++..|--+...+.++.+..+...
T Consensus 26 ~i~~l~~~g~~~~~~TGR~~~~~~~~~~~l~~~~ 59 (215)
T TIGR01487 26 AIRKAEKKGIPVSLVTGNTVPFARALAVLIGTSG 59 (215)
T ss_pred HHHHHHHCCCEEEEEcCCcchhHHHHHHHhCCCC
Confidence 3444455688877777666666777777776653
No 402
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=29.70 E-value=52 Score=13.93 Aligned_cols=11 Identities=9% Similarity=-0.082 Sum_probs=7.4
Q ss_pred eEEEECCCCcc
Q 044272 122 ALHIVGPDHQV 132 (133)
Q Consensus 122 ~~~lid~~G~i 132 (133)
..++.|++|+|
T Consensus 8 ~~i~~D~~G~l 18 (24)
T PF07494_consen 8 YSIYEDSDGNL 18 (24)
T ss_dssp EEEEE-TTSCE
T ss_pred EEEEEcCCcCE
Confidence 46678888875
No 403
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=29.65 E-value=1.1e+02 Score=20.49 Aligned_cols=37 Identities=8% Similarity=-0.044 Sum_probs=23.3
Q ss_pred HHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCC
Q 044272 52 KMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAY 88 (133)
Q Consensus 52 ~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~ 88 (133)
.+.++.+.++++|+.+..+|..+........++.+..
T Consensus 98 g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~l~ 134 (221)
T TIGR02253 98 GVRDTLMELRESGYRLGIITDGLPVKQWEKLERLGVR 134 (221)
T ss_pred CHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhCChH
Confidence 3445556666677777777766655566666666553
No 404
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=29.51 E-value=1.3e+02 Score=17.92 Aligned_cols=50 Identities=10% Similarity=-0.054 Sum_probs=30.5
Q ss_pred hhhHHHHcCceEEEEeCCCHHHH----HHHHHhcCCCCceeeCCcHHHHHHcCC
Q 044272 56 YVPEFDKREVKLLGLSCDDVKSH----NEWIKDIEAYTPIIADPNREIIKQLNM 105 (133)
Q Consensus 56 ~~~~~~~~~v~vv~is~d~~~~~----~~~~~~~~~~~~~~~d~~~~~~~~~~~ 105 (133)
..+.++...+.+|.|+.|.++.. ..+++.++.+.-.+.....++.+..|.
T Consensus 24 v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Ip~~~~~~tk~eLG~a~Gk 77 (99)
T PRK01018 24 TIKAIKLGKAKLVIVASNCPKDIKEDIEYYAKLSGIPVYEYEGSSVELGTLCGK 77 (99)
T ss_pred HHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCCHHHHHHHhCC
Confidence 34455555688888888854433 344566554432333567788888887
No 405
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=29.50 E-value=74 Score=21.02 Aligned_cols=25 Identities=12% Similarity=0.207 Sum_probs=20.5
Q ss_pred EeeCCCCchhHHHHHHHHhhhhHHH
Q 044272 37 SHPGDFTPVCTTELGKMAAYVPEFD 61 (133)
Q Consensus 37 f~~~~~c~~C~~~~~~l~~~~~~~~ 61 (133)
||+-.-||.|-.-.+.|.++.++++
T Consensus 3 ~~~D~~cP~cyl~~~~l~~~~~~~~ 27 (201)
T cd03024 3 IWSDVVCPWCYIGKRRLEKALAELG 27 (201)
T ss_pred EEecCcCccHHHHHHHHHHHHHhCC
Confidence 4556669999999999999888874
No 406
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=29.36 E-value=2.8e+02 Score=21.73 Aligned_cols=55 Identities=24% Similarity=0.254 Sum_probs=31.7
Q ss_pred CeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCC-----HHHHHHHHHhcCCCC
Q 044272 31 NWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDD-----VKSHNEWIKDIEAYT 89 (133)
Q Consensus 31 ~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~-----~~~~~~~~~~~~~~~ 89 (133)
.+.++.+. +-.-..=++....|+..+. ++|-++..|+.|+ .+.++..+++.+.++
T Consensus 99 ~P~vImmv-GLQGsGKTTt~~KLA~~lk---k~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~ 158 (451)
T COG0541 99 PPTVILMV-GLQGSGKTTTAGKLAKYLK---KKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPF 158 (451)
T ss_pred CCeEEEEE-eccCCChHhHHHHHHHHHH---HcCCceEEEecccCChHHHHHHHHHHHHcCCce
Confidence 34555443 4334444455555555443 3577788888875 355566677766655
No 407
>PF09651 Cas_APE2256: CRISPR-associated protein (Cas_APE2256); InterPro: IPR013442 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a conserved region of about 150 amino acids found in a family of Cas proteins in at least five archaeal and three bacterial species. In six of eight species, the protein is encoded the vicinity of a CRISPR/Cas locus.; PDB: 3QYF_A.
Probab=29.22 E-value=1.5e+02 Score=18.72 Aligned_cols=9 Identities=22% Similarity=0.335 Sum_probs=4.6
Q ss_pred eEEEEeCCC
Q 044272 66 KLLGLSCDD 74 (133)
Q Consensus 66 ~vv~is~d~ 74 (133)
.++.+++||
T Consensus 24 ~~~Ll~SDT 32 (136)
T PF09651_consen 24 EVVLLHSDT 32 (136)
T ss_dssp EEEEEEESS
T ss_pred EEEEEeCCC
Confidence 455555554
No 408
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=29.11 E-value=58 Score=21.30 Aligned_cols=10 Identities=30% Similarity=0.219 Sum_probs=4.3
Q ss_pred HHHHhcCCCC
Q 044272 80 EWIKDIEAYT 89 (133)
Q Consensus 80 ~~~~~~~~~~ 89 (133)
+.+++.|.+.
T Consensus 93 ~~ak~~g~~i 102 (179)
T TIGR03127 93 KKAKEIGATV 102 (179)
T ss_pred HHHHHCCCeE
Confidence 3344444433
No 409
>COG5561 Predicted metal-binding protein [Function unknown]
Probab=28.99 E-value=58 Score=19.40 Aligned_cols=27 Identities=11% Similarity=0.164 Sum_probs=11.1
Q ss_pred CchhHHHHHHHHhhhhHHHHcCceEEEE
Q 044272 43 TPVCTTELGKMAAYVPEFDKREVKLLGL 70 (133)
Q Consensus 43 c~~C~~~~~~l~~~~~~~~~~~v~vv~i 70 (133)
||.|..-+..+++-.-+|++. ++++++
T Consensus 7 CPG~v~CfKA~ne~~g~Fe~y-v~viaf 33 (101)
T COG5561 7 CPGEVRCFKAANEGEGKFEEY-VRVIAF 33 (101)
T ss_pred CCchHHHHHHHhccccccccc-EEEEEE
Confidence 444444444444443333332 444433
No 410
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=28.90 E-value=1.3e+02 Score=25.68 Aligned_cols=38 Identities=11% Similarity=0.019 Sum_probs=31.2
Q ss_pred HHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCC
Q 044272 51 GKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAY 88 (133)
Q Consensus 51 ~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~ 88 (133)
++..+..+++++.|++++.||-|.+....+.+++.|..
T Consensus 553 ~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~lGI~ 590 (902)
T PRK10517 553 ETTAPALKALKASGVTVKILTGDSELVAAKVCHEVGLD 590 (902)
T ss_pred hhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC
Confidence 34445556677889999999999999999999999985
No 411
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=28.77 E-value=1.3e+02 Score=20.48 Aligned_cols=40 Identities=8% Similarity=0.040 Sum_probs=30.0
Q ss_pred HHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCCC
Q 044272 50 LGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYT 89 (133)
Q Consensus 50 ~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~ 89 (133)
.+.+.+..+.++++|+++..+|..+...+...+++++...
T Consensus 91 ~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~gl~~ 130 (220)
T COG0546 91 FPGVKELLAALKSAGYKLGIVTNKPERELDILLKALGLAD 130 (220)
T ss_pred CCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHhCCcc
Confidence 4455566667777888888888888888888888877654
No 412
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=28.57 E-value=1.4e+02 Score=18.16 Aligned_cols=49 Identities=10% Similarity=-0.004 Sum_probs=29.6
Q ss_pred hhHHHHcCceEEEEeCCCHHHH----HHHHHhcCCCCceeeCCcHHHHHHcCC
Q 044272 57 VPEFDKREVKLLGLSCDDVKSH----NEWIKDIEAYTPIIADPNREIIKQLNM 105 (133)
Q Consensus 57 ~~~~~~~~v~vv~is~d~~~~~----~~~~~~~~~~~~~~~d~~~~~~~~~~~ 105 (133)
..+++...+..|.|+.|.++.. ..+++.++.+.-.+.+...++.+..|.
T Consensus 34 lkalk~gkaklViiA~D~~~~~kkki~~~~~~~~Vpv~~~~~t~~eLG~A~Gk 86 (108)
T PTZ00106 34 LKALRNGKAKLVIISNNCPPIRRSEIEYYAMLSKTGVHHYAGNNNDLGTACGR 86 (108)
T ss_pred HHHHHcCCeeEEEEeCCCCHHHHHHHHHHHhhcCCCEEEeCCCHHHHHHHhCC
Confidence 3444544688888998854433 334555543322223677888998887
No 413
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=28.54 E-value=1.3e+02 Score=22.50 Aligned_cols=11 Identities=27% Similarity=0.362 Sum_probs=7.7
Q ss_pred ccceeEEEECC
Q 044272 118 LPSRALHIVGP 128 (133)
Q Consensus 118 ~~~p~~~lid~ 128 (133)
.++|-+++|..
T Consensus 127 l~~P~Ty~v~S 137 (415)
T COG3919 127 LPYPKTYLVNS 137 (415)
T ss_pred CCCcceEEecc
Confidence 47788887753
No 414
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=28.54 E-value=1.8e+02 Score=19.35 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=19.3
Q ss_pred cCceEEEEeCCCHHHHHHHHHhcCCC
Q 044272 63 REVKLLGLSCDDVKSHNEWIKDIEAY 88 (133)
Q Consensus 63 ~~v~vv~is~d~~~~~~~~~~~~~~~ 88 (133)
+|..=|+|++++..+..+..++.|..
T Consensus 114 rGfgHIci~V~di~sac~~lkekGV~ 139 (170)
T KOG2944|consen 114 RGFGHICIEVDDINSACERLKEKGVR 139 (170)
T ss_pred CccceEEEEeCCHHHHHHHHHHhCce
Confidence 46777788888877777777777754
No 415
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=28.19 E-value=2.4e+02 Score=20.48 Aligned_cols=59 Identities=15% Similarity=0.259 Sum_probs=36.7
Q ss_pred EEEEEeeCCCCchhHHHHHHHHh----hhhHHHHcCceEEEEeCCCHHH--HHHHHHhcCCCCceee
Q 044272 33 TIIFSHPGDFTPVCTTELGKMAA----YVPEFDKREVKLLGLSCDDVKS--HNEWIKDIEAYTPIIA 93 (133)
Q Consensus 33 ~vl~f~~~~~c~~C~~~~~~l~~----~~~~~~~~~v~vv~is~d~~~~--~~~~~~~~~~~~~~~~ 93 (133)
=++|+.-...+|+-.+.-..+.+ +.+.+.+++++++.|..++... +.+..+++ +.|++.
T Consensus 32 ~~iY~~D~a~~PYG~ks~e~I~~~~~~i~~~l~~~~ik~lVIACNTASa~al~~LR~~~--~iPVvG 96 (269)
T COG0796 32 DIIYVGDTARFPYGEKSEEEIRERTLEIVDFLLERGIKALVIACNTASAVALEDLREKF--DIPVVG 96 (269)
T ss_pred cEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCEEEEecchHHHHHHHHHHHhC--CCCEEE
Confidence 45666656667776666555544 4666677889988898886544 34445554 444443
No 416
>PHA00447 lysozyme
Probab=28.13 E-value=42 Score=21.58 Aligned_cols=14 Identities=21% Similarity=0.121 Sum_probs=11.9
Q ss_pred cceeEEEECCCCcc
Q 044272 119 PSRALHIVGPDHQV 132 (133)
Q Consensus 119 ~~p~~~lid~~G~i 132 (133)
-+...|+|++||+|
T Consensus 42 dIgYhf~I~~dG~I 55 (142)
T PHA00447 42 DVGYHFIIRRDGTV 55 (142)
T ss_pred CcCeEEEECCCCEE
Confidence 36789999999987
No 417
>TIGR01352 tonB_Cterm TonB family C-terminal domain. This model represents the C-terminal of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to help span the periplasm.
Probab=27.97 E-value=39 Score=18.27 Aligned_cols=14 Identities=21% Similarity=0.152 Sum_probs=11.5
Q ss_pred cceeEEEECCCCcc
Q 044272 119 PSRALHIVGPDHQV 132 (133)
Q Consensus 119 ~~p~~~lid~~G~i 132 (133)
..--.|.||++|+|
T Consensus 11 ~v~v~~~i~~~G~v 24 (74)
T TIGR01352 11 TVVVRFTVDADGRV 24 (74)
T ss_pred EEEEEEEECCCCCE
Confidence 46678999999987
No 418
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=27.85 E-value=2.2e+02 Score=20.03 Aligned_cols=35 Identities=3% Similarity=0.086 Sum_probs=25.7
Q ss_pred hhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCCC
Q 044272 55 AYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYT 89 (133)
Q Consensus 55 ~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~ 89 (133)
+..++++++|+.++.+|--+...+....++.+...
T Consensus 28 ~ai~~l~~~Gi~~~iaTgR~~~~~~~~~~~l~l~~ 62 (273)
T PRK00192 28 PALKALKEKGIPVIPCTSKTAAEVEVLRKELGLED 62 (273)
T ss_pred HHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCC
Confidence 34455566799988888777788888888887653
No 419
>TIGR03831 YgiT_finger YgiT-type zinc finger domain. This domain model describes a small domain with two copies of a putative zinc-binding motif CXXC (usually CXXCG). Most member proteins consist largely of this domain or else carry an additional C-terminal helix-turn-helix domain, resembling that of the phage protein Cro and modeled by pfam01381.
Probab=27.85 E-value=41 Score=16.39 Aligned_cols=20 Identities=25% Similarity=0.476 Sum_probs=14.9
Q ss_pred CCCeEEEEEeeCCCCchhHH
Q 044272 29 GDNWTIIFSHPGDFTPVCTT 48 (133)
Q Consensus 29 ~~~~~vl~f~~~~~c~~C~~ 48 (133)
+++.+++--.++..|+.|-.
T Consensus 21 ~~~~~~i~~vp~~~C~~CGE 40 (46)
T TIGR03831 21 GGELIVIENVPALVCPQCGE 40 (46)
T ss_pred CCEEEEEeCCCccccccCCC
Confidence 66667776777888998854
No 420
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=27.83 E-value=1.3e+02 Score=17.39 Aligned_cols=50 Identities=10% Similarity=0.033 Sum_probs=31.2
Q ss_pred hhHHHHcCceEEEEeCCCHHHH----HHHHHhcCCCCceeeCCcHHHHHHcCCCC
Q 044272 57 VPEFDKREVKLLGLSCDDVKSH----NEWIKDIEAYTPIIADPNREIIKQLNMVD 107 (133)
Q Consensus 57 ~~~~~~~~v~vv~is~d~~~~~----~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 107 (133)
.+++++..+.+|.|+.|.++.. ..+++.++.+. .......++.+..|+..
T Consensus 17 lkaIk~gkakLViiA~Da~~~~~k~i~~~c~~~~Vpv-~~~~t~~eLG~A~G~~v 70 (82)
T PRK13601 17 LKAITNCNVLQVYIAKDAEEHVTKKIKELCEEKSIKI-VYIDTMKELGVMCGIDV 70 (82)
T ss_pred HHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHhCCCCE-EEeCCHHHHHHHHCCcc
Confidence 3445545688888888854333 34456666554 34445678889988853
No 421
>PRK07190 hypothetical protein; Provisional
Probab=27.82 E-value=52 Score=25.64 Aligned_cols=33 Identities=9% Similarity=0.221 Sum_probs=23.8
Q ss_pred CCCCCCCceEEecCCCeeeccccc-CCCeEEEEE
Q 044272 5 TIGDSVPNLQVQTNQGNFKLHDFI-GDNWTIIFS 37 (133)
Q Consensus 5 ~~G~~~p~f~l~~~~G~~~l~d~~-~~~~~vl~f 37 (133)
.+|+.+||+.+....|...|.++. +++.++|.|
T Consensus 382 l~G~r~pd~~~~~~~~~~~l~~~~~~~~~~ll~~ 415 (487)
T PRK07190 382 LCGSRLFDFEIFQGSEKTRLYSLLDYRKFTLFIF 415 (487)
T ss_pred ccCccCCCCcccCCcccccHHHhhcCCceEEEEe
Confidence 479999999886554566777766 556777765
No 422
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=27.72 E-value=1.9e+02 Score=20.69 Aligned_cols=55 Identities=18% Similarity=0.249 Sum_probs=33.0
Q ss_pred HHhhhhHHHHcCceEEEEeCCC---HHHHHHHHHhcCCCCceeeC-----CcHHHHHHcCCCC
Q 044272 53 MAAYVPEFDKREVKLLGLSCDD---VKSHNEWIKDIEAYTPIIAD-----PNREIIKQLNMVD 107 (133)
Q Consensus 53 l~~~~~~~~~~~v~vv~is~d~---~~~~~~~~~~~~~~~~~~~d-----~~~~~~~~~~~~~ 107 (133)
+..+..+|.+.|+++|-|+.+. -..+.+.+......|.+++| ...+-.+.+....
T Consensus 69 Vkall~~y~~~GLRlIev~k~~L~~l~~l~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~L 131 (249)
T PF05673_consen 69 VKALLNEYADQGLRLIEVSKEDLGDLPELLDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVL 131 (249)
T ss_pred HHHHHHHHhhcCceEEEECHHHhccHHHHHHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHh
Confidence 3445667788899999999764 34444444445556666666 3334445554433
No 423
>COG5418 Predicted secreted protein [Function unknown]
Probab=27.69 E-value=91 Score=20.41 Aligned_cols=27 Identities=15% Similarity=0.266 Sum_probs=23.0
Q ss_pred hhHHHHHHHHhhhhHHHHcCceEEEEe
Q 044272 45 VCTTELGKMAAYVPEFDKREVKLLGLS 71 (133)
Q Consensus 45 ~C~~~~~~l~~~~~~~~~~~v~vv~is 71 (133)
.|+..+.-+.+..++++..|+.++.|.
T Consensus 78 ~c~ki~~pi~~~l~e~k~d~~kii~IG 104 (164)
T COG5418 78 VCRKIADPIGRVLEEEKPDGIKIIFIG 104 (164)
T ss_pred HHHHHHHHHHHHHHHhCcCCceEEEEe
Confidence 899999999999999998887766664
No 424
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=27.62 E-value=68 Score=22.11 Aligned_cols=33 Identities=15% Similarity=0.222 Sum_probs=22.7
Q ss_pred HHHHHHhhhhHHHHcCceEEEEeCCCHHHHHHH
Q 044272 49 ELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEW 81 (133)
Q Consensus 49 ~~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~ 81 (133)
+..++..+.+..++.|..+|+|+..+...+.+.
T Consensus 98 eT~el~~~~~~aK~~g~~liaiT~~~~SsLak~ 130 (202)
T COG0794 98 ETKELLNLAPKAKRLGAKLIAITSNPDSSLAKA 130 (202)
T ss_pred cHHHHHHHHHHHHHcCCcEEEEeCCCCChHHHh
Confidence 345666666667778899999987655555444
No 425
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=27.54 E-value=1.2e+02 Score=20.37 Aligned_cols=36 Identities=6% Similarity=-0.024 Sum_probs=24.6
Q ss_pred HHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCC
Q 044272 52 KMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEA 87 (133)
Q Consensus 52 ~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~ 87 (133)
.+.++...++++|+.+..+|..+........++.+.
T Consensus 96 g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l 131 (222)
T PRK10826 96 GVREALALCKAQGLKIGLASASPLHMLEAVLTMFDL 131 (222)
T ss_pred CHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhCcc
Confidence 344555566677888887887777777777776665
No 426
>PF03544 TonB_C: Gram-negative bacterial TonB protein C-terminal; InterPro: IPR006260 The sequences in this set all contain a conserved C-terminal domain which is characteristic of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria []. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetitive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to span the periplasm. Iron is essential for growth in both bacteria and mammals. Controlling the amount of free iron in solution is often used as a tactic by hosts to limit invasion of pathogenic microbes; binding iron tightly within protein molecules can accomplish this. Some bacteria express surface receptors to capture eukaryotic iron-binding compounds, while others have evolved siderophores to scavenge iron from iron-binding host proteins []. The absence of free iron molecules in the surrounding environment triggers transcription of gene clusters that encode both siderophore-synthesis ezymes, and receptors that recognise iron-bound siderophores []. An example of the latter is Escherichia coli fepA, which resides in the outer envelope and captures iron-bound enterobactin []. To complete transport of bound iron across the inner membrane, a second receptor complex is needed. The major component of this is tonB, a 27kDa protein that facilitates energy transfer from the proton motive force to outer receptors. B-12 and colicin receptors also make use of the tonB system to drive active transport at the outer membrane.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016020 membrane, 0030288 outer membrane-bounded periplasmic space; PDB: 1U07_B 1IHR_A 2GRX_C 2GSK_B 1QXX_A 1XX3_A 2K9K_A.
Probab=27.51 E-value=31 Score=18.96 Aligned_cols=14 Identities=21% Similarity=0.304 Sum_probs=11.2
Q ss_pred cceeEEEECCCCcc
Q 044272 119 PSRALHIVGPDHQV 132 (133)
Q Consensus 119 ~~p~~~lid~~G~i 132 (133)
..--.|.||++|+|
T Consensus 17 ~v~v~~~I~~~G~v 30 (79)
T PF03544_consen 17 TVVVEFTIDPDGRV 30 (79)
T ss_dssp EEEEEEEEETTTEE
T ss_pred EEEEEEEEeCCCCE
Confidence 45667889999987
No 427
>PF12907 zf-met2: Zinc-binding
Probab=27.41 E-value=35 Score=16.97 Aligned_cols=20 Identities=5% Similarity=0.187 Sum_probs=10.9
Q ss_pred CCchhHH---HHHHHHhhhhHHH
Q 044272 42 FTPVCTT---ELGKMAAYVPEFD 61 (133)
Q Consensus 42 ~c~~C~~---~~~~l~~~~~~~~ 61 (133)
-|.+|+. .+..-..+.+.++
T Consensus 3 ~C~iC~qtF~~t~~~~~L~eH~e 25 (40)
T PF12907_consen 3 ICKICRQTFMQTTNEPQLKEHAE 25 (40)
T ss_pred CcHHhhHHHHhcCCHHHHHHHHH
Confidence 3888983 4444344444444
No 428
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=27.36 E-value=1.1e+02 Score=22.72 Aligned_cols=29 Identities=3% Similarity=0.242 Sum_probs=22.0
Q ss_pred CCCceEEecCCC-eeecccccCCCeEEEEE
Q 044272 9 SVPNLQVQTNQG-NFKLHDFIGDNWTIIFS 37 (133)
Q Consensus 9 ~~p~f~l~~~~G-~~~l~d~~~~~~~vl~f 37 (133)
.+-.+.|.+.+| +++.+++..|-.+++++
T Consensus 329 NAETIkLv~~dG~pvSV~eLk~GD~vlv~~ 358 (376)
T COG1465 329 NAETIKLVNPDGEPVSVAELKPGDEVLVYL 358 (376)
T ss_pred cceeEEEEcCCCcEeeeEecCCCCEEEEEe
Confidence 345677888999 79999997666666664
No 429
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=27.34 E-value=1.6e+02 Score=25.04 Aligned_cols=38 Identities=8% Similarity=0.075 Sum_probs=30.1
Q ss_pred HHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCC
Q 044272 51 GKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAY 88 (133)
Q Consensus 51 ~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~ 88 (133)
+...+..+.+++.|++++.||-|......+.+++.|..
T Consensus 531 ~~~~~~i~~l~~~Gi~v~miTGD~~~tA~~ia~~~Gi~ 568 (884)
T TIGR01522 531 PGVKEAVTTLITGGVRIIMITGDSQETAVSIARRLGMP 568 (884)
T ss_pred hHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCC
Confidence 44444555667789999999999999999999998875
No 430
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=27.27 E-value=1.4e+02 Score=20.39 Aligned_cols=38 Identities=3% Similarity=-0.000 Sum_probs=27.1
Q ss_pred HHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCC
Q 044272 50 LGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEA 87 (133)
Q Consensus 50 ~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~ 87 (133)
.+.+.++.+.++++|+.+..+|..+.+......+..+.
T Consensus 95 ~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~~l 132 (224)
T PRK14988 95 REDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHTGL 132 (224)
T ss_pred CCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHCCc
Confidence 35566677777888888877777776766666666664
No 431
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=27.25 E-value=1.2e+02 Score=20.96 Aligned_cols=38 Identities=8% Similarity=-0.062 Sum_probs=19.8
Q ss_pred HHHHHhhhhHHHHcCceEEEEeCCCH--HHHHHHHHhcCC
Q 044272 50 LGKMAAYVPEFDKREVKLLGLSCDDV--KSHNEWIKDIEA 87 (133)
Q Consensus 50 ~~~l~~~~~~~~~~~v~vv~is~d~~--~~~~~~~~~~~~ 87 (133)
.+...+..++++++|..+..+|..+. ....+.+++.+.
T Consensus 26 ~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~gl 65 (242)
T TIGR01459 26 YPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLGI 65 (242)
T ss_pred CccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHCCC
Confidence 45555566666666666666654322 222244455554
No 432
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=27.10 E-value=1.5e+02 Score=19.75 Aligned_cols=37 Identities=27% Similarity=0.282 Sum_probs=22.1
Q ss_pred HHHhhhhHHHHcCceEEEEe-CCCHHHHHHHHHhcCCC
Q 044272 52 KMAAYVPEFDKREVKLLGLS-CDDVKSHNEWIKDIEAY 88 (133)
Q Consensus 52 ~l~~~~~~~~~~~v~vv~is-~d~~~~~~~~~~~~~~~ 88 (133)
...++.++++++|+.+..-| .+.++..++.++.++..
T Consensus 49 dv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~~l~i~ 86 (169)
T PF12689_consen 49 DVPEILQELKERGVKLAVASRTDEPDWARELLKLLEID 86 (169)
T ss_dssp THHHHHHHHHHCT--EEEEE--S-HHHHHHHHHHTT-C
T ss_pred CHHHHHHHHHHCCCEEEEEECCCChHHHHHHHHhcCCC
Confidence 34444445555788887777 47788888888887777
No 433
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=26.96 E-value=45 Score=23.73 Aligned_cols=28 Identities=18% Similarity=0.201 Sum_probs=15.7
Q ss_pred eeecccccCC-CeEEEEEeeCCC-CchhHHH
Q 044272 21 NFKLHDFIGD-NWTIIFSHPGDF-TPVCTTE 49 (133)
Q Consensus 21 ~~~l~d~~~~-~~~vl~f~~~~~-c~~C~~~ 49 (133)
+.++.|+ .| ..+++++.-.++ |+.|+.-
T Consensus 26 ~~~~~d~-~g~~~~~vf~~GCnlrC~~C~N~ 55 (260)
T COG1180 26 KKPLVDG-PGSIRLSVFLQGCNLRCPYCQNP 55 (260)
T ss_pred ccCCcCC-CCcEEEEEEeCCCCCCCCCCCCh
Confidence 3677887 55 334444433333 8888754
No 434
>COG1709 Predicted transcriptional regulator [Transcription]
Probab=26.76 E-value=1.2e+02 Score=21.38 Aligned_cols=33 Identities=18% Similarity=0.303 Sum_probs=27.2
Q ss_pred EEEeCCCHHHHHHHHHhcCCCCceeeCCcHHHHHHcCCCC
Q 044272 68 LGLSCDDVKSHNEWIKDIEAYTPIIADPNREIIKQLNMVD 107 (133)
Q Consensus 68 v~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 107 (133)
|.+|-|+-+.+++|.+.++.. +.++++.+|+..
T Consensus 22 IvlS~~pge~lrKWR~~F~vS-------Q~elA~~l~vSp 54 (241)
T COG1709 22 IVLSEDPGETLRKWREIFNVS-------QTELARELGVSP 54 (241)
T ss_pred eEecCChhHHHHHHHHHhCcc-------HHHHHHHhCCCc
Confidence 457888999999999998875 778888888853
No 435
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=26.73 E-value=60 Score=20.87 Aligned_cols=11 Identities=18% Similarity=0.326 Sum_probs=4.9
Q ss_pred HcCceEEEEeC
Q 044272 62 KREVKLLGLSC 72 (133)
Q Consensus 62 ~~~v~vv~is~ 72 (133)
++|+.+++|+.
T Consensus 104 ~~g~~ii~iT~ 114 (154)
T TIGR00441 104 DKGMKTITLAG 114 (154)
T ss_pred HCCCEEEEEeC
Confidence 33444444443
No 436
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=26.56 E-value=1.6e+02 Score=20.88 Aligned_cols=39 Identities=18% Similarity=0.296 Sum_probs=28.5
Q ss_pred eEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeC
Q 044272 32 WTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSC 72 (133)
Q Consensus 32 ~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~ 72 (133)
+.+++|++|+ .....-..+-|..+++.+. ....|++||.
T Consensus 2 ~~li~~IPGN-PGlv~fY~~Fl~~L~~~l~-~~~~i~~ish 40 (266)
T PF10230_consen 2 RPLIVFIPGN-PGLVEFYEEFLSALYEKLN-PQFEILGISH 40 (266)
T ss_pred cEEEEEECCC-CChHHHHHHHHHHHHHhCC-CCCeeEEecC
Confidence 3678888887 6667777777777777652 3588999985
No 437
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=26.39 E-value=69 Score=23.43 Aligned_cols=24 Identities=17% Similarity=0.314 Sum_probs=13.5
Q ss_pred eeCCCCchhHHHHHHHHhhhhHHHH
Q 044272 38 HPGDFTPVCTTELGKMAAYVPEFDK 62 (133)
Q Consensus 38 ~~~~~c~~C~~~~~~l~~~~~~~~~ 62 (133)
++..|||.|-.-. -++.+.+++.+
T Consensus 16 ~~~~~CpGCg~~~-i~~~i~~al~~ 39 (301)
T PRK05778 16 LPTTWCPGCGNFG-ILNAIIQALAE 39 (301)
T ss_pred CCCCCCCCCCChH-HHHHHHHHHHH
Confidence 4567999997542 33334444443
No 438
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=26.29 E-value=1.4e+02 Score=19.74 Aligned_cols=37 Identities=5% Similarity=-0.005 Sum_probs=21.1
Q ss_pred HHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCC
Q 044272 51 GKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEA 87 (133)
Q Consensus 51 ~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~ 87 (133)
+...++.+.++++|+.+..+|..+...+....+..+.
T Consensus 78 ~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~~l 114 (205)
T TIGR01454 78 PGVPELLAELRADGVGTAIATGKSGPRARSLLEALGL 114 (205)
T ss_pred CCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHcCC
Confidence 3444555555666676666666555555555555554
No 439
>TIGR03341 YhgI_GntY IscR-regulated protein YhgI. IscR (TIGR02010) is an iron-sulfur cluster-binding transcriptional regulator (see Genome Property GenProp0138). Members of this protein family include YhgI, whose expression is under control of IscR, and show sequence similarity to IscA, a known protein of iron-sulfur cluster biosynthesis. These two lines of evidence strongly suggest a role as an iron-sulfur cluster biosynthesis protein. An older study designated this protein GntY and suggested a role for it and for the product of an adjacent gene, based on complementation studies, in gluconate utilization.
Probab=26.28 E-value=89 Score=21.21 Aligned_cols=50 Identities=14% Similarity=0.161 Sum_probs=25.8
Q ss_pred CeeecccccCCCeEEEEEeeCCCCchhHHHHHHHHhh-hhHHHHc--Cc-eEEEEe
Q 044272 20 GNFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAY-VPEFDKR--EV-KLLGLS 71 (133)
Q Consensus 20 G~~~l~d~~~~~~~vl~f~~~~~c~~C~~~~~~l~~~-~~~~~~~--~v-~vv~is 71 (133)
|.+.|-++.++..+.|-| .+. |..|....-.|... ...+++. .+ .|+.++
T Consensus 127 Gdielv~v~~~~~v~v~l-~Ga-C~gC~~s~~Tl~~~ie~~l~~~~p~v~~V~~~~ 180 (190)
T TIGR03341 127 GKVTLVEITDDGVAVLQF-GGG-CNGCSMVDVTLKDGVEKTLLERFPELKGVRDAT 180 (190)
T ss_pred CceEEEEEcCCCEEEEEE-eec-CCCCcchHHHHHHHHHHHHHHhCCCcceEEEec
Confidence 478888874334444443 365 66666665555422 3334432 23 355554
No 440
>TIGR00108 eRF peptide chain release factor eRF/aRF, subunit 1. Alternative names include eRF1, SUP45, omnipotent suppressor protein 1.
Probab=26.20 E-value=75 Score=24.34 Aligned_cols=34 Identities=18% Similarity=0.214 Sum_probs=21.8
Q ss_pred CchhHHHH-----HH-HHhhhhHHHHcCceEEEEeCCCHH
Q 044272 43 TPVCTTEL-----GK-MAAYVPEFDKREVKLLGLSCDDVK 76 (133)
Q Consensus 43 c~~C~~~~-----~~-l~~~~~~~~~~~v~vv~is~d~~~ 76 (133)
||.|-..+ .. +.++.+..++.|.+|..||.++++
T Consensus 349 c~~~~~~~~~~~~~~~ve~L~e~a~~~Ga~V~iiS~~~ee 388 (409)
T TIGR00108 349 CPACGQEMDVVEERDLIEWLSELAENFGAKLEFISTESEE 388 (409)
T ss_pred CcccCccccchhhhhHHHHHHHHHHHcCCEEEEECCCChh
Confidence 66665544 23 345566667778888888887654
No 441
>PF03716 WCCH: WCCH motif ; InterPro: IPR005159 The WCCH motif is found in a retrotransposons and Gemini viruses. A specific function has not been associated to this motif [].
Probab=26.19 E-value=22 Score=15.67 Aligned_cols=9 Identities=22% Similarity=0.519 Sum_probs=7.0
Q ss_pred CCchhHHHH
Q 044272 42 FTPVCTTEL 50 (133)
Q Consensus 42 ~c~~C~~~~ 50 (133)
+||.|.+..
T Consensus 7 ~cphCprHk 15 (25)
T PF03716_consen 7 CCPHCPRHK 15 (25)
T ss_pred CCCCCcccc
Confidence 589998873
No 442
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=26.12 E-value=80 Score=18.91 Aligned_cols=13 Identities=23% Similarity=0.565 Sum_probs=10.9
Q ss_pred ceeEEEECCCCcc
Q 044272 120 SRALHIVGPDHQV 132 (133)
Q Consensus 120 ~p~~~lid~~G~i 132 (133)
....++.||+|.+
T Consensus 103 ~~~~~f~DPdG~~ 115 (123)
T cd08351 103 GRGVYFLDPDGHL 115 (123)
T ss_pred eeEEEEECCCCCE
Confidence 5688999999975
No 443
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=25.84 E-value=2.3e+02 Score=19.56 Aligned_cols=32 Identities=9% Similarity=0.187 Sum_probs=22.9
Q ss_pred hhHHHHcCceEEEEeCCCHHHHHHHHHhcCCC
Q 044272 57 VPEFDKREVKLLGLSCDDVKSHNEWIKDIEAY 88 (133)
Q Consensus 57 ~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~ 88 (133)
.++++++|+.++..|--+.....+..++.+..
T Consensus 25 i~~l~~~G~~~~iaTGR~~~~~~~~~~~~~~~ 56 (256)
T TIGR00099 25 LAKLREKGIKVVLATGRPYKEVKNILKELGLD 56 (256)
T ss_pred HHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCC
Confidence 34456668888877777777777777777765
No 444
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=25.76 E-value=2.5e+02 Score=19.95 Aligned_cols=47 Identities=13% Similarity=0.176 Sum_probs=33.9
Q ss_pred CchhHHHHHHHHhhhhHHHHcCceEEEEeC---CCHHHHHHHHHhcCCCC
Q 044272 43 TPVCTTELGKMAAYVPEFDKREVKLLGLSC---DDVKSHNEWIKDIEAYT 89 (133)
Q Consensus 43 c~~C~~~~~~l~~~~~~~~~~~v~vv~is~---d~~~~~~~~~~~~~~~~ 89 (133)
..-=..++..|.++.+.++++|+.+--|.- ++.+..++|+.....+.
T Consensus 115 ~g~r~~QI~~l~~Lr~~L~~~g~~v~iVADEWCNT~eDI~~F~da~A~dm 164 (248)
T PF07476_consen 115 AGSREAQIEALAELREELDRRGINVEIVADEWCNTLEDIREFADAKAADM 164 (248)
T ss_dssp -SSHHHHHHHHHHHHHHHHHCT--EEEEE-TT--SHHHHHHHHHTT-SSE
T ss_pred CCChHHHHHHHHHHHHHHHhcCCCCeEEeehhcCCHHHHHHHHhcCCcCE
Confidence 334567788899999999999988777774 58999999999877765
No 445
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=25.63 E-value=1.5e+02 Score=17.31 Aligned_cols=23 Identities=13% Similarity=0.159 Sum_probs=14.0
Q ss_pred CceEEEEeCCCHHHHHHHHHhcC
Q 044272 64 EVKLLGLSCDDVKSHNEWIKDIE 86 (133)
Q Consensus 64 ~v~vv~is~d~~~~~~~~~~~~~ 86 (133)
|..=+++..++.+.+.+..++..
T Consensus 70 g~~hi~f~v~~~~~v~~~~~~l~ 92 (125)
T cd07241 70 GWAHLAFSVGSKEAVDELTERLR 92 (125)
T ss_pred ceEEEEEECCCHHHHHHHHHHHH
Confidence 56667888876555555544443
No 446
>PRK13937 phosphoheptose isomerase; Provisional
Probab=25.51 E-value=73 Score=21.28 Aligned_cols=10 Identities=20% Similarity=0.215 Sum_probs=4.2
Q ss_pred HHHHhcCCCC
Q 044272 80 EWIKDIEAYT 89 (133)
Q Consensus 80 ~~~~~~~~~~ 89 (133)
+++++.|.+.
T Consensus 127 ~~ak~~g~~~ 136 (188)
T PRK13937 127 EKARELGMKT 136 (188)
T ss_pred HHHHHCCCeE
Confidence 3444444433
No 447
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=25.38 E-value=1.4e+02 Score=20.00 Aligned_cols=38 Identities=5% Similarity=-0.030 Sum_probs=24.0
Q ss_pred HHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCC
Q 044272 51 GKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAY 88 (133)
Q Consensus 51 ~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~ 88 (133)
+...++.+.+++.|+.+..+|..+.+.....++..+..
T Consensus 90 ~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~l~ 127 (220)
T TIGR03351 90 PGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLGWT 127 (220)
T ss_pred CCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHhhhh
Confidence 33445556666667777777766666666666666654
No 448
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=25.32 E-value=9.9 Score=15.45 Aligned_cols=16 Identities=13% Similarity=0.407 Sum_probs=8.6
Q ss_pred CchhHHHHHHHHhhhh
Q 044272 43 TPVCTTELGKMAAYVP 58 (133)
Q Consensus 43 c~~C~~~~~~l~~~~~ 58 (133)
|+.|....+...++..
T Consensus 3 C~~C~~~~~~~~~l~~ 18 (24)
T PF13894_consen 3 CPICGKSFRSKSELRQ 18 (24)
T ss_dssp -SSTS-EESSHHHHHH
T ss_pred CcCCCCcCCcHHHHHH
Confidence 7777766666655543
No 449
>cd08196 DHQS-like1 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=25.30 E-value=1.6e+02 Score=21.92 Aligned_cols=35 Identities=6% Similarity=0.245 Sum_probs=23.7
Q ss_pred HHHHHHhhhhHHHHcCc----eEEEEeCCCHHHHHHHHH
Q 044272 49 ELGKMAAYVPEFDKREV----KLLGLSCDDVKSHNEWIK 83 (133)
Q Consensus 49 ~~~~l~~~~~~~~~~~v----~vv~is~d~~~~~~~~~~ 83 (133)
.+..+.+..+.+.+.+. -||+|.-.+.-.+.+++.
T Consensus 58 ~l~~v~~~~~~~~~~~~~r~d~iIaiGGGsv~D~ak~vA 96 (346)
T cd08196 58 SLEAVSSVIESLRQNGARRNTHLVAIGGGIIQDVTTFVA 96 (346)
T ss_pred CHHHHHHHHHHHHHcCCCCCcEEEEECChHHHHHHHHHH
Confidence 34555555666666666 688898877777777765
No 450
>PF01383 CpcD: CpcD/allophycocyanin linker domain; InterPro: IPR008213 Ferredoxin-NADP(+) oxydoreductase (FNR) (EC=1.18.1.2) transfers electrons from ferredoxin (or flavodoxin) to NADP(+) to generate NADPH. In eucaryotes, the nuclear-encoded, chloroplast-targeted enzyme contains two domains: an FAD-binding domain (see PDOC51384 from PROSITEDOC) and an NADP(+)-binding domain. With the exception of Gloeobacter violaceus PCC 7421, the predicted sequences of all cyanobacterial petH genes, encoding FNR, correspond to a protein containing three domains. Two domains at the C terminus correspond to the FAD- and NADP(+)-binding domains of higher plants FNR protein, which compose the catalytic domains of the enzyme. The N-terminal domain is similar to phycobilisome (PBS)-associated linker proteins from numerous cyanobacteria [, , ] and is associated with: - CpcD, the phycocyanin (PC)-associated, rod-capping, linker polypeptide of PBS. The similarity spans nearly the entire sequence of this linker class. - CpcC, the PC-associated rod linker polypeptide. The similarity is confined only to the C terminus of this linker class. - ApcC, the allophycocyanin (APC)-associated, core linker polypeptide. The similarity only correspond to about half of the molecule. The CpcD-like domain has an elongated shape and consists of a three-stranded beta-sheet, two alpha-helices, one of which has only about one turn, and the connecting random coil segments [].; GO: 0030089 phycobilisome; PDB: 1B33_O.
Probab=25.27 E-value=1.2e+02 Score=16.11 Aligned_cols=21 Identities=5% Similarity=0.271 Sum_probs=13.3
Q ss_pred HHHhhhhHHHHcCceEEEEeC
Q 044272 52 KMAAYVPEFDKREVKLLGLSC 72 (133)
Q Consensus 52 ~l~~~~~~~~~~~v~vv~is~ 72 (133)
+|.+.++.+...|-+|++|+.
T Consensus 35 ~ls~~~q~I~r~GGkIvsItp 55 (56)
T PF01383_consen 35 QLSQEMQRINRQGGKIVSITP 55 (56)
T ss_dssp HHHHHHHHHHHCT-EEEEEEE
T ss_pred HhHHHHHHHHHCCCEEEEEEe
Confidence 444455556667999998874
No 451
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=25.23 E-value=1.6e+02 Score=21.07 Aligned_cols=39 Identities=13% Similarity=0.152 Sum_probs=27.1
Q ss_pred HHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCC
Q 044272 50 LGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAY 88 (133)
Q Consensus 50 ~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~ 88 (133)
.+...++.+.++++|+++..+|..+...+....+..+..
T Consensus 144 ~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~gl~ 182 (273)
T PRK13225 144 FPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQGLR 182 (273)
T ss_pred CCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCh
Confidence 345555666677778887777777777777777777653
No 452
>PF04723 GRDA: Glycine reductase complex selenoprotein A; InterPro: IPR006812 Found in clostridia, this protein contains one active site selenocysteine and catalyses the reductive deamination of glycine, which is coupled to the esterification of orthophosphate resulting in the formation of ATP []. A member of this family may also exist in Treponema denticola [].; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=25.22 E-value=67 Score=20.76 Aligned_cols=36 Identities=8% Similarity=0.165 Sum_probs=20.1
Q ss_pred eeCCCCchhHHH-------HHHHHhhhhHHHHcCceEEEEeCC
Q 044272 38 HPGDFTPVCTTE-------LGKMAAYVPEFDKREVKLLGLSCD 73 (133)
Q Consensus 38 ~~~~~c~~C~~~-------~~~l~~~~~~~~~~~v~vv~is~d 73 (133)
|.++-|-+|+.. -.++.++.++|...++.|+.=+.|
T Consensus 35 fs~TeCFVctaagaMDLEnQ~rvk~~aEk~g~enlvVvlG~ae 77 (150)
T PF04723_consen 35 FSSTECFVCTAAGAMDLENQQRVKDLAEKYGAENLVVVLGAAE 77 (150)
T ss_pred EEeeeEEEecccccccHHHHHHHHHHHHhcCCccEEEEecCCC
Confidence 347778888753 334455555555445555444444
No 453
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=25.13 E-value=1.4e+02 Score=22.36 Aligned_cols=36 Identities=11% Similarity=0.058 Sum_probs=23.6
Q ss_pred HHHHHHhhhhHHHHcCc----eEEEEeCCCHHHHHHHHHh
Q 044272 49 ELGKMAAYVPEFDKREV----KLLGLSCDDVKSHNEWIKD 84 (133)
Q Consensus 49 ~~~~l~~~~~~~~~~~v----~vv~is~d~~~~~~~~~~~ 84 (133)
.+..+.++.+.+.+.++ -||+|.-.+.-...+++..
T Consensus 66 ~~~~v~~~~~~~~~~~~dr~~~IIAvGGGsv~D~ak~~A~ 105 (355)
T cd08197 66 TLSTLSDLVERALALGATRRSVIVALGGGVVGNIAGLLAA 105 (355)
T ss_pred CHHHHHHHHHHHHHcCCCCCcEEEEECCcHHHHHHHHHHH
Confidence 34555555566665666 4888888777777777654
No 454
>PRK06724 hypothetical protein; Provisional
Probab=24.66 E-value=1.2e+02 Score=18.66 Aligned_cols=12 Identities=8% Similarity=0.304 Sum_probs=9.5
Q ss_pred eeEEEECCCCcc
Q 044272 121 RALHIVGPDHQV 132 (133)
Q Consensus 121 p~~~lid~~G~i 132 (133)
.+.++.||||..
T Consensus 106 ~~~~f~DPdG~~ 117 (128)
T PRK06724 106 YTIDFYDPNGFI 117 (128)
T ss_pred EEEEEECCCCCE
Confidence 467789999964
No 455
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=24.65 E-value=1.5e+02 Score=17.07 Aligned_cols=52 Identities=13% Similarity=0.079 Sum_probs=31.1
Q ss_pred HhhhhHHHHcCceEEEEeCCC-H---HH-HHHHHHhcCCCCceeeCCcHHHHHHcCCC
Q 044272 54 AAYVPEFDKREVKLLGLSCDD-V---KS-HNEWIKDIEAYTPIIADPNREIIKQLNMV 106 (133)
Q Consensus 54 ~~~~~~~~~~~v~vv~is~d~-~---~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 106 (133)
.+..+.++...+.++.++.|. + .. +..++++++.+.-.+. ...++.+.+|..
T Consensus 21 ~~v~k~l~~~~~~lvilA~d~~~~~~~~~l~~~c~~~~Ip~~~~~-s~~eLG~~~g~~ 77 (95)
T PF01248_consen 21 KEVLKALKKGKAKLVILAEDCSPDSIKKHLPALCEEKNIPYVFVP-SKEELGRACGKK 77 (95)
T ss_dssp HHHHHHHHTTCESEEEEETTSSSGHHHHHHHHHHHHTTEEEEEES-HHHHHHHHTTSS
T ss_pred HHHHHHHHcCCCcEEEEcCCCChhhhcccchhheeccceeEEEEC-CHHHHHHHHCCC
Confidence 444555665567788888763 2 22 4456676555442222 347888998884
No 456
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=24.65 E-value=2.3e+02 Score=19.10 Aligned_cols=36 Identities=8% Similarity=0.022 Sum_probs=25.5
Q ss_pred HHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcC
Q 044272 51 GKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIE 86 (133)
Q Consensus 51 ~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~ 86 (133)
+.+.++.+.++++|+.+..+|..........++.+.
T Consensus 73 pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~ 108 (214)
T TIGR03333 73 EGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGIV 108 (214)
T ss_pred ccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhhC
Confidence 455566677777888888888877666666666653
No 457
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=24.63 E-value=1.8e+02 Score=21.10 Aligned_cols=40 Identities=15% Similarity=-0.030 Sum_probs=29.3
Q ss_pred HHHHHhhhhHHHHcCceEEEEeCCC---HHHHHHHHHhcCCCC
Q 044272 50 LGKMAAYVPEFDKREVKLLGLSCDD---VKSHNEWIKDIEAYT 89 (133)
Q Consensus 50 ~~~l~~~~~~~~~~~v~vv~is~d~---~~~~~~~~~~~~~~~ 89 (133)
+|...++++...+.|+.|+.||-=+ .+...+++.+.|.+.
T Consensus 147 lp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~~NL~kaGy~~ 189 (275)
T TIGR01680 147 LPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTEANLKKAGYHT 189 (275)
T ss_pred ChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHHcCCCC
Confidence 5566677888888999999999632 344567788888754
No 458
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=24.58 E-value=71 Score=20.96 Aligned_cols=15 Identities=27% Similarity=0.175 Sum_probs=6.4
Q ss_pred HHHHhcCCCCceeeC
Q 044272 80 EWIKDIEAYTPIIAD 94 (133)
Q Consensus 80 ~~~~~~~~~~~~~~d 94 (133)
+.+++.|.+...+.+
T Consensus 96 ~~ak~~g~~iI~IT~ 110 (179)
T cd05005 96 EKAKKAGAKVVLITS 110 (179)
T ss_pred HHHHHCCCeEEEEEC
Confidence 344444544433333
No 459
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=24.48 E-value=1.7e+02 Score=20.29 Aligned_cols=38 Identities=8% Similarity=-0.006 Sum_probs=27.5
Q ss_pred HHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCC
Q 044272 51 GKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAY 88 (133)
Q Consensus 51 ~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~ 88 (133)
+.+.++.+.++++|+.+..+|..+...+....++.+..
T Consensus 111 pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~ 148 (248)
T PLN02770 111 NGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLLGLS 148 (248)
T ss_pred ccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCCh
Confidence 44556666677778888777777777777777777754
No 460
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=24.47 E-value=3.1e+02 Score=21.37 Aligned_cols=74 Identities=14% Similarity=0.077 Sum_probs=42.7
Q ss_pred CeEEE-EEeeCCCCchhHHHHHHHHhhhhHHHHcCce-EEEEeCCC--HHHHHHHHHhcCCCCceeeCCcHHHHHHcCC
Q 044272 31 NWTII-FSHPGDFTPVCTTELGKMAAYVPEFDKREVK-LLGLSCDD--VKSHNEWIKDIEAYTPIIADPNREIIKQLNM 105 (133)
Q Consensus 31 ~~~vl-~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~-vv~is~d~--~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 105 (133)
+|+|| .-|... -..-......|.+....+-+.++. ||.++.|. ...+.+.....-.....+.|...+.++.|=.
T Consensus 149 ~PVVVIdnF~~k-~~~~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~ 226 (431)
T PF10443_consen 149 RPVVVIDNFLHK-AEENDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVL 226 (431)
T ss_pred CCEEEEcchhcc-CcccchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHH
Confidence 55555 333222 222344567888888888777755 99999873 2333333322222226777888777777644
No 461
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=24.44 E-value=1.2e+02 Score=17.93 Aligned_cols=22 Identities=0% Similarity=-0.025 Sum_probs=14.6
Q ss_pred ceEEEEeCCCHHHHHHHHHhcC
Q 044272 65 VKLLGLSCDDVKSHNEWIKDIE 86 (133)
Q Consensus 65 v~vv~is~d~~~~~~~~~~~~~ 86 (133)
..-++++.++.+.+.++.++..
T Consensus 65 ~~hi~f~v~~~~~v~~~~~~~~ 86 (123)
T cd07262 65 GTHVAFAAPSREAVDAFHAAAL 86 (123)
T ss_pred ceEEEEECCCHHHHHHHHHHHH
Confidence 4567888887766666655533
No 462
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=24.42 E-value=13 Score=19.71 Aligned_cols=18 Identities=11% Similarity=0.368 Sum_probs=9.9
Q ss_pred CchhHHHHHHHHhhhhHH
Q 044272 43 TPVCTTELGKMAAYVPEF 60 (133)
Q Consensus 43 c~~C~~~~~~l~~~~~~~ 60 (133)
||.|.+.+++=..+...+
T Consensus 27 CP~C~a~~~~srnLrRHl 44 (54)
T PF09237_consen 27 CPICGAVIRQSRNLRRHL 44 (54)
T ss_dssp -TTT--EESSHHHHHHHH
T ss_pred CCcchhhccchhhHHHHH
Confidence 999998876665554444
No 463
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=24.18 E-value=1.4e+02 Score=16.35 Aligned_cols=54 Identities=6% Similarity=-0.161 Sum_probs=25.4
Q ss_pred EeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCCHHH-HHHHHHhcCCCC-ceeeCC
Q 044272 37 SHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKS-HNEWIKDIEAYT-PIIADP 95 (133)
Q Consensus 37 f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~~~~-~~~~~~~~~~~~-~~~~d~ 95 (133)
+|....|+.|++..-.|.++- -..+++.+.....+. ..+|.+-+.... |++.|.
T Consensus 3 ly~~~~s~~s~rv~~~L~e~g-----l~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~~ 58 (73)
T cd03052 3 LYHWTQSFSSQKVRLVIAEKG-----LRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIHG 58 (73)
T ss_pred EecCCCCccHHHHHHHHHHcC-----CCCEEEEecCCcCccCCHHHHHhCcCCCCCEEEEC
Confidence 344556788877665555431 124455555432221 223444333222 777653
No 464
>PF07680 DoxA: TQO small subunit DoxA; InterPro: IPR011636 Thiosulphate:quinone oxidoreductase (TQO) catalyses one of the early steps in elemental sulphur oxidation. A novel TQO enzyme was purified from the thermo-acidophilic archaeon Acidianus ambivalens and shown to consist of a large subunit (DoxD) and a smaller subunit (DoxA). The DoxD- and DoxA-like two subunits are fused together in a single polypeptide in Q8AAF0 from SWISSPROT.
Probab=24.02 E-value=58 Score=20.86 Aligned_cols=29 Identities=10% Similarity=0.102 Sum_probs=20.0
Q ss_pred cCCCCCCCCCCCCCCccceeEEEECCCCccC
Q 044272 103 LNMVDPDEKDSSGKQLPSRALHIVGPDHQVQ 133 (133)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~ 133 (133)
|.++..+..+.+| ...+..-|+|++|+++
T Consensus 33 f~vyr~~G~D~Yg--sfl~~i~l~d~~g~vv 61 (133)
T PF07680_consen 33 FHVYRVEGPDVYG--SFLIGIQLKDSTGHVV 61 (133)
T ss_pred EEEEEcCCCccCC--ceeeEEEEECCCCCEE
Confidence 4455555455555 4788899999999873
No 465
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=23.95 E-value=2.3e+02 Score=20.58 Aligned_cols=55 Identities=15% Similarity=0.237 Sum_probs=34.2
Q ss_pred HHhhhhHHHHcCceEEEEeCCCHHHH---HHHHHhcCCCCceeeC-----CcHHHHHHcCCCC
Q 044272 53 MAAYVPEFDKREVKLLGLSCDDVKSH---NEWIKDIEAYTPIIAD-----PNREIIKQLNMVD 107 (133)
Q Consensus 53 l~~~~~~~~~~~v~vv~is~d~~~~~---~~~~~~~~~~~~~~~d-----~~~~~~~~~~~~~ 107 (133)
+..+..+|.++|.++|=|+.++-..+ -+.++.....|.+.+| ....-++.+....
T Consensus 102 VKA~~~e~~~~glrLVEV~k~dl~~Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~L 164 (287)
T COG2607 102 VKALLNEYADEGLRLVEVDKEDLATLPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSAL 164 (287)
T ss_pred HHHHHHHHHhcCCeEEEEcHHHHhhHHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHh
Confidence 44556677888999999998754443 3444455555666666 3345556665543
No 466
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=23.82 E-value=1.7e+02 Score=17.35 Aligned_cols=12 Identities=17% Similarity=0.335 Sum_probs=9.6
Q ss_pred eeEEEECCCCcc
Q 044272 121 RALHIVGPDHQV 132 (133)
Q Consensus 121 p~~~lid~~G~i 132 (133)
...++.||+|..
T Consensus 100 ~~~~~~DPdG~~ 111 (120)
T cd07252 100 GLIRFADPDGNR 111 (120)
T ss_pred EEEEEECCCCCE
Confidence 467899999964
No 467
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=23.65 E-value=1.6e+02 Score=19.48 Aligned_cols=23 Identities=13% Similarity=-0.133 Sum_probs=11.2
Q ss_pred EEEEeCCCH-HHHHHHHHhcCCCC
Q 044272 67 LLGLSCDDV-KSHNEWIKDIEAYT 89 (133)
Q Consensus 67 vv~is~d~~-~~~~~~~~~~~~~~ 89 (133)
++-+|.|+. ..+.+.+++.|...
T Consensus 109 ~vLvSgD~DF~~Lv~~lre~G~~V 132 (160)
T TIGR00288 109 VALVTRDADFLPVINKAKENGKET 132 (160)
T ss_pred EEEEeccHhHHHHHHHHHHCCCEE
Confidence 555566643 33344455555443
No 468
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=23.63 E-value=2e+02 Score=18.08 Aligned_cols=36 Identities=6% Similarity=0.051 Sum_probs=24.1
Q ss_pred HhhhhHHHHcCceEEEEeCCC---H------------HHHHHHHHhcCCCC
Q 044272 54 AAYVPEFDKREVKLLGLSCDD---V------------KSHNEWIKDIEAYT 89 (133)
Q Consensus 54 ~~~~~~~~~~~v~vv~is~d~---~------------~~~~~~~~~~~~~~ 89 (133)
.+..++++++|..|+.+|.=+ . ....+|+++++.++
T Consensus 30 ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ipY 80 (126)
T TIGR01689 30 IEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHNVPY 80 (126)
T ss_pred HHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHHcCCCC
Confidence 333445556789988888421 1 25678999988887
No 469
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=23.47 E-value=1.9e+02 Score=21.22 Aligned_cols=30 Identities=20% Similarity=0.211 Sum_probs=19.4
Q ss_pred hhHHHHcCceEEEEeCCCHHHHHHHHHhcCCC
Q 044272 57 VPEFDKREVKLLGLSCDDVKSHNEWIKDIEAY 88 (133)
Q Consensus 57 ~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~ 88 (133)
.+..+++|..+|+|+.++ .+.+++...+..
T Consensus 98 ~~~a~~~ga~vIaIT~~~--~L~~~a~~~~~~ 127 (337)
T PRK08674 98 VEQALKRGAKIIAITSGG--KLKEMAKEHGLP 127 (337)
T ss_pred HHHHHHCCCeEEEECCCc--hHHHHHHhcCCe
Confidence 334456688888888654 377777765443
No 470
>PRK06834 hypothetical protein; Provisional
Probab=23.45 E-value=74 Score=24.78 Aligned_cols=33 Identities=15% Similarity=0.353 Sum_probs=24.6
Q ss_pred CCCCCCCceEEecCCCeeeccccc-CCCeEEEEE
Q 044272 5 TIGDSVPNLQVQTNQGNFKLHDFI-GDNWTIIFS 37 (133)
Q Consensus 5 ~~G~~~p~f~l~~~~G~~~l~d~~-~~~~~vl~f 37 (133)
.+|+.+||..+....|...|.++. .++.++|.|
T Consensus 382 ~~G~~~p~~~~~~~~~~~~l~~~~~~~~~~ll~~ 415 (488)
T PRK06834 382 LLGRRMPDLDLVTADGPRRVFTLLHNARPVLLNL 415 (488)
T ss_pred CCcCCCCCcccccCCCceeHHHHhcCCeeEEEec
Confidence 479999999987766666787765 556777765
No 471
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=23.44 E-value=1.8e+02 Score=18.10 Aligned_cols=34 Identities=12% Similarity=0.183 Sum_probs=23.5
Q ss_pred HHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHh
Q 044272 51 GKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKD 84 (133)
Q Consensus 51 ~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~ 84 (133)
+.+.++.+.++++|+++..+|..+........+.
T Consensus 67 ~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~ 100 (154)
T TIGR01549 67 RGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRK 100 (154)
T ss_pred cCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHH
Confidence 3456666667777899888887766666555555
No 472
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=23.43 E-value=2.7e+02 Score=19.47 Aligned_cols=32 Identities=9% Similarity=0.113 Sum_probs=21.8
Q ss_pred hHHHHcCceEEEEeCCCHHHHHHHHHhcCCCC
Q 044272 58 PEFDKREVKLLGLSCDDVKSHNEWIKDIEAYT 89 (133)
Q Consensus 58 ~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~ 89 (133)
++++++|+.++..|-=+...+.++.++.+.+.
T Consensus 29 ~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~ 60 (272)
T PRK15126 29 ARLRERDITLTFATGRHVLEMQHILGALSLDA 60 (272)
T ss_pred HHHHHCCCEEEEECCCCHHHHHHHHHHcCCCC
Confidence 33456788877666666777777777777654
No 473
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=23.40 E-value=78 Score=23.03 Aligned_cols=19 Identities=26% Similarity=0.494 Sum_probs=10.8
Q ss_pred CCCchhHHH--HHHHHhhhhH
Q 044272 41 DFTPVCTTE--LGKMAAYVPE 59 (133)
Q Consensus 41 ~~c~~C~~~--~~~l~~~~~~ 59 (133)
.|||.|-.- +..+.+..++
T Consensus 2 ~~CpGCg~~~i~~~~~~a~~~ 22 (287)
T TIGR02177 2 DWCPGCGDFGILSALQRALAE 22 (287)
T ss_pred CcCCCCCChHHHHHHHHHHHH
Confidence 589999763 3444433333
No 474
>COG0266 Nei Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair]
Probab=23.37 E-value=23 Score=25.56 Aligned_cols=9 Identities=33% Similarity=0.811 Sum_probs=5.9
Q ss_pred eCCCCchhH
Q 044272 39 PGDFTPVCT 47 (133)
Q Consensus 39 ~~~~c~~C~ 47 (133)
.+.|||.|+
T Consensus 264 ~t~~CP~CQ 272 (273)
T COG0266 264 STFYCPVCQ 272 (273)
T ss_pred cCEeCCCCC
Confidence 345688886
No 475
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=23.35 E-value=24 Score=18.42 Aligned_cols=11 Identities=27% Similarity=0.700 Sum_probs=5.3
Q ss_pred CCchhHHHHHH
Q 044272 42 FTPVCTTELGK 52 (133)
Q Consensus 42 ~c~~C~~~~~~ 52 (133)
.||.|.+.+..
T Consensus 22 ~CPlC~r~l~~ 32 (54)
T PF04423_consen 22 CCPLCGRPLDE 32 (54)
T ss_dssp E-TTT--EE-H
T ss_pred cCCCCCCCCCH
Confidence 69999876554
No 476
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=23.34 E-value=1.8e+02 Score=19.70 Aligned_cols=36 Identities=6% Similarity=-0.016 Sum_probs=25.8
Q ss_pred HHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhc
Q 044272 50 LGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDI 85 (133)
Q Consensus 50 ~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~ 85 (133)
.+.+.++.+.++++|+.+..+|..........++++
T Consensus 76 ~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~ 111 (219)
T PRK09552 76 REGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGL 111 (219)
T ss_pred CcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHh
Confidence 455566677777888998888887666666666665
No 477
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=23.31 E-value=83 Score=22.75 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=14.1
Q ss_pred eCCCCchhHHH--HHHHHhhhhHH
Q 044272 39 PGDFTPVCTTE--LGKMAAYVPEF 60 (133)
Q Consensus 39 ~~~~c~~C~~~--~~~l~~~~~~~ 60 (133)
...|||.|-.- +..|.+..+++
T Consensus 6 ~~~~CpGCg~~~il~al~~al~~l 29 (279)
T PRK11866 6 PPIWCPGCGNYGILEALRKALAEL 29 (279)
T ss_pred CCCCCCCCCChHHHHHHHHHHHHh
Confidence 35789999765 45555555444
No 478
>PF04800 ETC_C1_NDUFA4: ETC complex I subunit conserved region; InterPro: IPR006885 This entry represents prokaryotic NADH-ubiquinone oxidoreductase subunits (1.6.5.3 from EC, 1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 21 kDa protein [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022900 electron transport chain, 0005743 mitochondrial inner membrane; PDB: 2JYA_A 2LJU_A.
Probab=23.04 E-value=89 Score=18.95 Aligned_cols=27 Identities=7% Similarity=-0.032 Sum_probs=21.1
Q ss_pred EEEeCCCHHHHHHHHHhcCCCCceeeC
Q 044272 68 LGLSCDDVKSHNEWIKDIEAYTPIIAD 94 (133)
Q Consensus 68 v~is~d~~~~~~~~~~~~~~~~~~~~d 94 (133)
+-+..++.|+..+|++++|..+.+...
T Consensus 51 v~l~F~skE~Ai~yaer~G~~Y~V~~p 77 (101)
T PF04800_consen 51 VRLKFDSKEDAIAYAERNGWDYEVEEP 77 (101)
T ss_dssp CEEEESSHHHHHHHHHHCT-EEEEE-S
T ss_pred eEeeeCCHHHHHHHHHHcCCeEEEeCC
Confidence 567889999999999999998855543
No 479
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=23.01 E-value=2e+02 Score=24.54 Aligned_cols=33 Identities=6% Similarity=0.238 Sum_probs=23.1
Q ss_pred hhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCC
Q 044272 56 YVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAY 88 (133)
Q Consensus 56 ~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~ 88 (133)
..+.+++.|++++.++-|..+...+.+++.|..
T Consensus 545 ~I~~l~~aGI~v~miTGD~~~tA~~ia~~~gi~ 577 (917)
T TIGR01116 545 AIEKCRTAGIRVIMITGDNKETAEAICRRIGIF 577 (917)
T ss_pred HHHHHHHCCCEEEEecCCCHHHHHHHHHHcCCC
Confidence 334456677888888888777777777777764
No 480
>PRK11478 putative lyase; Provisional
Probab=23.00 E-value=1.8e+02 Score=17.27 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=18.0
Q ss_pred CceEEEEeCCCHHHHHHHHHhcCCC
Q 044272 64 EVKLLGLSCDDVKSHNEWIKDIEAY 88 (133)
Q Consensus 64 ~v~vv~is~d~~~~~~~~~~~~~~~ 88 (133)
|+.=+++..++.+...+.+++.|..
T Consensus 75 g~~hi~f~v~d~~~~~~~l~~~G~~ 99 (129)
T PRK11478 75 GLRHLAFSVDDIDAAVAHLESHNVK 99 (129)
T ss_pred ceeEEEEEeCCHHHHHHHHHHcCCe
Confidence 5556677888877777777777764
No 481
>PRK14974 cell division protein FtsY; Provisional
Probab=22.95 E-value=3e+02 Score=20.55 Aligned_cols=55 Identities=16% Similarity=0.079 Sum_probs=30.0
Q ss_pred CeEEEEEeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeCCC-----HHHHHHHHHhcCCCC
Q 044272 31 NWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDD-----VKSHNEWIKDIEAYT 89 (133)
Q Consensus 31 ~~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~d~-----~~~~~~~~~~~~~~~ 89 (133)
++.++.|.-.+.+. =+..+..|. ..+.+.|..++.++.|+ .+.++.+++..+.+.
T Consensus 139 ~~~vi~~~G~~GvG-KTTtiakLA---~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v 198 (336)
T PRK14974 139 KPVVIVFVGVNGTG-KTTTIAKLA---YYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKV 198 (336)
T ss_pred CCeEEEEEcCCCCC-HHHHHHHHH---HHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCce
Confidence 45566665333222 122233333 34555677887788885 245566777776544
No 482
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=22.92 E-value=2e+02 Score=17.97 Aligned_cols=43 Identities=2% Similarity=-0.167 Sum_probs=28.9
Q ss_pred EeeCCCCchhHHHHHHHHhhhhHHHHcCceEEEEeC----CCHHHHHHHHHhcC
Q 044272 37 SHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSC----DDVKSHNEWIKDIE 86 (133)
Q Consensus 37 f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv~is~----d~~~~~~~~~~~~~ 86 (133)
+|.-..|.-|++...-|.+ .|+.+-.+.. -+.+.+.+|.+..+
T Consensus 5 iY~~p~Cst~RKA~~~L~~-------~gi~~~~~d~~~~p~t~~eL~~~l~~~g 51 (126)
T TIGR01616 5 FYEKPGCANNARQKAALKA-------SGHDVEVQDILKEPWHADTLRPYFGNKP 51 (126)
T ss_pred EEeCCCCHHHHHHHHHHHH-------CCCCcEEEeccCCCcCHHHHHHHHHHcC
Confidence 3445569999987766655 3666555543 25788889988865
No 483
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=22.87 E-value=1.9e+02 Score=24.84 Aligned_cols=34 Identities=9% Similarity=0.180 Sum_probs=26.8
Q ss_pred hhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCC
Q 044272 55 AYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAY 88 (133)
Q Consensus 55 ~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~ 88 (133)
+..+++++.|++++.||-|......+.+++.|..
T Consensus 586 ~aI~~l~~aGI~v~miTGD~~~tA~~iA~~~GI~ 619 (941)
T TIGR01517 586 EAVQECQRAGITVRMVTGDNIDTAKAIARNCGIL 619 (941)
T ss_pred HHHHHHHHCCCEEEEECCCChHHHHHHHHHcCCC
Confidence 3344566778999999999888888888888875
No 484
>PF04502 DUF572: Family of unknown function (DUF572) ; InterPro: IPR007590 This entry represents eukaryotic proteins with undetermined function belonging to the CWC16 family.
Probab=22.82 E-value=61 Score=23.93 Aligned_cols=38 Identities=11% Similarity=0.099 Sum_probs=21.8
Q ss_pred CceEEecCCCeeecccccCCCeEEEEEe--eCCCCchhHHHHHH
Q 044272 11 PNLQVQTNQGNFKLHDFIGDNWTIIFSH--PGDFTPVCTTELGK 52 (133)
Q Consensus 11 p~f~l~~~~G~~~l~d~~~~~~~vl~f~--~~~~c~~C~~~~~~ 52 (133)
|||. .+.+.+..-.+.+.++|-|- +..||..|..++..
T Consensus 13 PD~d----~~k~~~~kr~k~~~~~VRf~~Pf~i~C~~C~~~I~k 52 (324)
T PF04502_consen 13 PDFD----PSKHPLRKRAKQGILTVRFMMPFNIWCNTCGEYIYK 52 (324)
T ss_pred CCCC----cccccccccCcCcceEEEEcCCccCcCCCCcccccc
Confidence 4666 23444433323344556553 46789999988654
No 485
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=22.77 E-value=88 Score=21.05 Aligned_cols=27 Identities=19% Similarity=0.064 Sum_probs=11.7
Q ss_pred cCceEEEEeCC--CHH--HHHHHHHhcCCCC
Q 044272 63 REVKLLGLSCD--DVK--SHNEWIKDIEAYT 89 (133)
Q Consensus 63 ~~v~vv~is~d--~~~--~~~~~~~~~~~~~ 89 (133)
.+-.+++||.. +.+ ...+.+++.|.+.
T Consensus 111 ~~Dv~I~iS~SG~t~~~i~~~~~ak~~g~~i 141 (192)
T PRK00414 111 EGDVLLGISTSGNSGNIIKAIEAARAKGMKV 141 (192)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCeE
Confidence 34445555542 222 2334455555444
No 486
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=22.77 E-value=2e+02 Score=25.07 Aligned_cols=32 Identities=9% Similarity=0.118 Sum_probs=23.6
Q ss_pred hhHHHHcCceEEEEeCCCHHHHHHHHHhcCCC
Q 044272 57 VPEFDKREVKLLGLSCDDVKSHNEWIKDIEAY 88 (133)
Q Consensus 57 ~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~ 88 (133)
.+.+++.|++++.||-|.+......+++.|..
T Consensus 655 I~~l~~aGIkv~MiTGD~~~tA~~iA~~~Gi~ 686 (1053)
T TIGR01523 655 VEKCHQAGINVHMLTGDFPETAKAIAQEVGII 686 (1053)
T ss_pred HHHHHHCCCEEEEECCCCHHHHHHHHHHcCCC
Confidence 34456668888888888888887788777763
No 487
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=22.77 E-value=1.5e+02 Score=20.47 Aligned_cols=37 Identities=5% Similarity=-0.025 Sum_probs=23.5
Q ss_pred HHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCC
Q 044272 51 GKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEA 87 (133)
Q Consensus 51 ~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~ 87 (133)
+.+.++.+.++++|+.+..+|..+.+......++.+.
T Consensus 102 pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~gl 138 (253)
T TIGR01422 102 PGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEAAL 138 (253)
T ss_pred CCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHHHh
Confidence 3445556666777888777777666666666555443
No 488
>PF12617 LdpA_C: Iron-Sulfur binding protein C terminal; InterPro: IPR021039 This entry represents the C-terminal region of the iron-sulphur protein LdpA (Light dependent period), which is found in phototropic organisms. LdpA was originally identified in cyanobacteria where it is involved in light-dependent modulation of the circadian clock. The presence of iron-sulphur clusters on LdpA suggests that it may modulate the circadian clock as an indirect function of light intensity by sensing changes in cellular physiology [].
Probab=22.59 E-value=1.8e+02 Score=19.80 Aligned_cols=17 Identities=35% Similarity=0.675 Sum_probs=8.0
Q ss_pred ceEEEEeCCCHHHHHHH
Q 044272 65 VKLLGLSCDDVKSHNEW 81 (133)
Q Consensus 65 v~vv~is~d~~~~~~~~ 81 (133)
++.|+||.+..+.+.+|
T Consensus 37 Lk~lAiSc~~~~~li~~ 53 (183)
T PF12617_consen 37 LKLLAISCPDGEGLIDY 53 (183)
T ss_pred ccEEEEECCCCHHHHHH
Confidence 45555555444443333
No 489
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=22.40 E-value=2.5e+02 Score=18.84 Aligned_cols=36 Identities=8% Similarity=-0.057 Sum_probs=23.1
Q ss_pred HhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCCC
Q 044272 54 AAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYT 89 (133)
Q Consensus 54 ~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~ 89 (133)
.+...+++++|+.++..|--+...+.++.+..+.+.
T Consensus 26 ~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~ 61 (230)
T PRK01158 26 VEAIRKAEKLGIPVILATGNVLCFARAAAKLIGTSG 61 (230)
T ss_pred HHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCCC
Confidence 333444566788887777666666667777776653
No 490
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=22.34 E-value=2.1e+02 Score=18.15 Aligned_cols=37 Identities=14% Similarity=0.152 Sum_probs=23.3
Q ss_pred HHHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCC
Q 044272 50 LGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEA 87 (133)
Q Consensus 50 ~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~ 87 (133)
.+.+.++.+.++++|+++..+|..+... .....+.+.
T Consensus 87 ~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~~~l 123 (183)
T TIGR01509 87 LPGVEPLLEALRARGKKLALLTNSPRDH-AVLVQELGL 123 (183)
T ss_pred CcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHhcCC
Confidence 3555666667777788888787765554 444444554
No 491
>COG3529 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=22.32 E-value=35 Score=18.67 Aligned_cols=27 Identities=15% Similarity=0.394 Sum_probs=17.2
Q ss_pred EeeCCCCchhHHHHHHHHhhhhHHHHcCceEE
Q 044272 37 SHPGDFTPVCTTELGKMAAYVPEFDKREVKLL 68 (133)
Q Consensus 37 f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vv 68 (133)
|..+.-||.|..+- -.+.+.+.++.++
T Consensus 7 FIAGA~CP~C~~~D-----tl~mW~En~ve~v 33 (66)
T COG3529 7 FIAGAVCPACQAQD-----TLAMWRENNVEIV 33 (66)
T ss_pred hhccCCCcccchhh-----HHHHHHhcCCceE
Confidence 55677799998752 2344566677744
No 492
>PRK13938 phosphoheptose isomerase; Provisional
Probab=22.31 E-value=90 Score=21.22 Aligned_cols=20 Identities=5% Similarity=0.091 Sum_probs=10.0
Q ss_pred hhhhHHHHcCceEEEEeCCC
Q 044272 55 AYVPEFDKREVKLLGLSCDD 74 (133)
Q Consensus 55 ~~~~~~~~~~v~vv~is~d~ 74 (133)
+..+..+++|+.+|+|+..+
T Consensus 131 ~a~~~Ak~~G~~vI~iT~~~ 150 (196)
T PRK13938 131 RAAKTARELGVTVVAMTGES 150 (196)
T ss_pred HHHHHHHHCCCEEEEEeCCC
Confidence 33333444556666665543
No 493
>PF11760 CbiG_N: Cobalamin synthesis G N-terminal; InterPro: IPR021744 Members of this family are involved in cobalamin synthesis. The gene encoded by P72862 from SWISSPROT has been designated cbiH but in fact represents a fusion between cbiH and cbiG. As other multi-functional proteins involved in cobalamin biosynthesis catalyse adjacent steps in the pathway, including CysG, CobL (CbiET), CobIJ and CobA-HemD, it is therefore possible that CbiG catalyses a reaction step adjacent to CbiH. In the anaerobic pathway such a step could be the formation of a gamma lactone, which is thought to help to mediate the anaerobic ring contraction process []. Within the cobalamin synthesis pathway CbiG catalyses the both the opening of the lactone ring and the extrusion of the two-carbon fragment of cobalt-precorrin-5A from C-20 and its associated methyl group (deacylation) to give cobalt-precorrin-5B. The N-terminal of the enzyme is conserved in this family, and the C-terminal and the mid-sections are conserved independently in other families, CbiG_C and CbiG_mid, although the distinct function of each region is unclear. ; PDB: 3EEQ_B.
Probab=22.25 E-value=63 Score=18.89 Aligned_cols=14 Identities=21% Similarity=0.211 Sum_probs=7.6
Q ss_pred ccceeEEEECCCCc
Q 044272 118 LPSRALHIVGPDHQ 131 (133)
Q Consensus 118 ~~~p~~~lid~~G~ 131 (133)
..-|.++++|++|+
T Consensus 36 ~~DPaVvvvde~g~ 49 (84)
T PF11760_consen 36 DTDPAVVVVDEDGR 49 (84)
T ss_dssp TT--EEEEE-TT--
T ss_pred CCCCCEEEEeCCCC
Confidence 46889999999986
No 494
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=22.12 E-value=3.6e+02 Score=20.57 Aligned_cols=27 Identities=7% Similarity=0.076 Sum_probs=18.2
Q ss_pred cCceEEEEeCCC-----HHHHHHHHHhcCCCC
Q 044272 63 REVKLLGLSCDD-----VKSHNEWIKDIEAYT 89 (133)
Q Consensus 63 ~~v~vv~is~d~-----~~~~~~~~~~~~~~~ 89 (133)
.|..|..|+.|+ .+.++.|++..+.++
T Consensus 205 ~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv 236 (388)
T PRK12723 205 KSLNIKIITIDNYRIGAKKQIQTYGDIMGIPV 236 (388)
T ss_pred CCCeEEEEeccCccHHHHHHHHHHhhcCCcce
Confidence 467788888876 345666777776654
No 495
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=22.12 E-value=2.8e+02 Score=19.31 Aligned_cols=47 Identities=13% Similarity=0.206 Sum_probs=27.0
Q ss_pred HHHHHhhhhHHHHcCceEEEEeCCC-------HHHHHHHHHhcCCCCceeeCCc
Q 044272 50 LGKMAAYVPEFDKREVKLLGLSCDD-------VKSHNEWIKDIEAYTPIIADPN 96 (133)
Q Consensus 50 ~~~l~~~~~~~~~~~v~vv~is~d~-------~~~~~~~~~~~~~~~~~~~d~~ 96 (133)
...+....++++++|.+|.-+..++ .+.+.+++++++...-.+.++.
T Consensus 48 ~saMRhfa~~L~~~G~~V~Y~~~~~~~~~~s~~~~L~~~~~~~~~~~~~~~~P~ 101 (224)
T PF04244_consen 48 FSAMRHFADELRAKGFRVHYIELDDPENTQSFEDALARALKQHGIDRLHVMEPG 101 (224)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-TT-TT--SSHHHHHHHHHHHH----EEEE--S
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCccccccHHHHHHHHHHHcCCCEEEEECCC
Confidence 4555666778888999999999873 4677788888876665555543
No 496
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=22.05 E-value=2e+02 Score=20.32 Aligned_cols=38 Identities=13% Similarity=0.109 Sum_probs=25.4
Q ss_pred HHHHhhhhHHHHcCceEEEEeCCCHHHHHHHHHhcCCC
Q 044272 51 GKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAY 88 (133)
Q Consensus 51 ~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~ 88 (133)
+.+.++.+.++++|+.+..+|..+........+..+..
T Consensus 112 pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~ 149 (260)
T PLN03243 112 PGSREFVQALKKHEIPIAVASTRPRRYLERAIEAVGME 149 (260)
T ss_pred CCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHcCCH
Confidence 44445556666677887777777777777777776653
No 497
>KOG4530 consensus Predicted flavoprotein [General function prediction only]
Probab=22.05 E-value=1.6e+02 Score=19.75 Aligned_cols=30 Identities=17% Similarity=0.265 Sum_probs=23.9
Q ss_pred CCCeEEEEEeeCCCCchhHHHHHHHHhhhh
Q 044272 29 GDNWTIIFSHPGDFTPVCTTELGKMAAYVP 58 (133)
Q Consensus 29 ~~~~~vl~f~~~~~c~~C~~~~~~l~~~~~ 58 (133)
.||+.+++-+-+..-.-|..++.++.-..+
T Consensus 117 ~gKPalivSyGGhGGg~c~~qL~~v~~fLk 146 (199)
T KOG4530|consen 117 AGKPALIVSYGGHGGGRCQYQLRQVGVFLK 146 (199)
T ss_pred cCCceEEEEecCCCCchHHHHHHHHHhhhe
Confidence 678888888888878889988888776543
No 498
>COG1490 Dtd D-Tyr-tRNAtyr deacylase [Translation, ribosomal structure and biogenesis]
Probab=21.98 E-value=98 Score=20.02 Aligned_cols=35 Identities=17% Similarity=0.387 Sum_probs=20.8
Q ss_pred ceEEEEeCCCHHHHHHHHHhcCCCCceeeCCcHHH
Q 044272 65 VKLLGLSCDDVKSHNEWIKDIEAYTPIIADPNREI 99 (133)
Q Consensus 65 v~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~ 99 (133)
+.+++|..++.+...+++.+.-.+..++.|..+.+
T Consensus 28 lvLvGV~~~Dt~~~a~~l~~Ki~~lRiF~D~~gKm 62 (145)
T COG1490 28 LVLVGVTHDDTEEDADYLAEKILNLRIFEDEEGKM 62 (145)
T ss_pred EEEEeecCCCCHHHHHHHHHHHhceEeecCccccc
Confidence 33778887655555555555444557777765543
No 499
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=21.92 E-value=72 Score=21.99 Aligned_cols=22 Identities=14% Similarity=0.314 Sum_probs=17.5
Q ss_pred CCCchhHHHHHHHHhhhhHHHH
Q 044272 41 DFTPVCTTELGKMAAYVPEFDK 62 (133)
Q Consensus 41 ~~c~~C~~~~~~l~~~~~~~~~ 62 (133)
..|+.|+..+.++.+....+-.
T Consensus 29 ~~C~~Cr~~~~~~e~~~~~l~~ 50 (215)
T TIGR02451 29 ALCPECRARIAAFEALGGSLLE 50 (215)
T ss_pred HHCHHHHHHHHHHHHHHHHHhh
Confidence 3599999999999887666643
No 500
>COG4252 Predicted transmembrane sensor domain [Signal transduction mechanisms]
Probab=21.84 E-value=1.8e+02 Score=22.35 Aligned_cols=80 Identities=10% Similarity=0.073 Sum_probs=0.0
Q ss_pred HHHHhhhhHHHHcCceEEEEeC--CCH--HHHHHHHHhcCCCCceeeCCcHHHHHHcCCCCCCCCCCCC-CCccceeEEE
Q 044272 51 GKMAAYVPEFDKREVKLLGLSC--DDV--KSHNEWIKDIEAYTPIIADPNREIIKQLNMVDPDEKDSSG-KQLPSRALHI 125 (133)
Q Consensus 51 ~~l~~~~~~~~~~~v~vv~is~--d~~--~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~l 125 (133)
..++++.+++++.+-+.|++-. |-+ +...+.++.++....++.... ..... +.. ....+.-. ....--..++
T Consensus 83 ~~~A~Ll~kL~a~qp~aIgLDi~r~~P~~~~~~~La~~~~~~~nli~~~~-~~~~~-~~~-v~~pP~l~~~~~iG~sd~~ 159 (400)
T COG4252 83 AALARLLDKLAAAQPRAIGLDIYRDLPSSPGDRALAAVLQRAPNLIGVEK-LSGDP-GIA-VNPPPELPRQAQIGFSDLI 159 (400)
T ss_pred HHHHHHHHHHHhcCCcEEEEEEeecCCCCcccHHHHHHhccCcceEEEee-ccCCC-CCc-cCCCCCCcccccccccccc
Q ss_pred ECCCCccC
Q 044272 126 VGPDHQVQ 133 (133)
Q Consensus 126 id~~G~i~ 133 (133)
+|+||++|
T Consensus 160 ~D~Dg~vR 167 (400)
T COG4252 160 LDSDGKVR 167 (400)
T ss_pred cCCchhHh
Done!