BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044274
(278 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HHL|A Chain A, Crystal Structure Of The Human Small Ctd Phosphatase 3
Isoform 1
pdb|2HHL|B Chain B, Crystal Structure Of The Human Small Ctd Phosphatase 3
Isoform 1
pdb|2HHL|C Chain C, Crystal Structure Of The Human Small Ctd Phosphatase 3
Isoform 1
pdb|2HHL|D Chain D, Crystal Structure Of The Human Small Ctd Phosphatase 3
Isoform 1
Length = 195
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 73/168 (43%), Positives = 96/168 (57%), Gaps = 17/168 (10%)
Query: 101 EHLLPPLISPD--KKTIFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGV 158
++LLP + D KK + +DLDETL+HS P DFIV IDG + YVLKRP V
Sbjct: 15 KYLLPEVTVLDYGKKCVVIDLDETLVHSSFKPISNA-DFIVPVEIDGTIHQVYVLKRPHV 73
Query: 159 DAFLDAISKKYEVVVFTAGLKEYASLLLNRLDRNGVISHRLYRDSCKQIDGKFVKDLSEM 218
D FL + + +E V+FTA L +YA + + LDR GV RL+R+SC G +VKDLS +
Sbjct: 74 DEFLQRMGQLFECVLFTASLAKYADPVADLLDRWGVFRARLFRESCVFHRGNYVKDLSRL 133
Query: 219 GRNLK--------------QPENAIPVKPFTGDPSDIELWKLVNFFEA 252
GR L PENA+PV+ + D +D EL L+ FFE
Sbjct: 134 GRELSKVIIVDNSPASYIFHPENAVPVQSWFDDMTDTELLDLIPFFEG 181
>pdb|2Q5E|A Chain A, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|B Chain B, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|C Chain C, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|D Chain D, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|E Chain E, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|F Chain F, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|G Chain G, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|H Chain H, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
Length = 187
Score = 113 bits (282), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 70/165 (42%), Positives = 93/165 (56%), Gaps = 17/165 (10%)
Query: 103 LLPPLISPDKKTI--FLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGVDA 160
LLP + D+ I +DLDETL+HS P DFIV I+G YVLKRP VD
Sbjct: 6 LLPEVTEEDQGRICVVIDLDETLVHSSFKPI-NNADFIVPIEIEGTTHQVYVLKRPYVDE 64
Query: 161 FLDAISKKYEVVVFTAGLKEYASLLLNRLDRNGVISHRLYRDSCKQIDGKFVKDLSEMGR 220
FL + + +E V+FTA L +YA + + LDR GV RL+R+SC G +VKDLS +GR
Sbjct: 65 FLRRMGELFECVLFTASLAKYADPVTDLLDRCGVFRARLFRESCVFHQGCYVKDLSRLGR 124
Query: 221 NLK--------------QPENAIPVKPFTGDPSDIELWKLVNFFE 251
+L+ PENA+PV+ + D +D EL L+ FE
Sbjct: 125 DLRKTLILDNSPASYIFHPENAVPVQSWFDDMADTELLNLIPIFE 169
>pdb|3L0C|A Chain A, Crystal Structure Of Scp1 Phosphatase D206a Mutant With
Trap Inorganic Phosphate
pdb|3L0C|B Chain B, Crystal Structure Of Scp1 Phosphatase D206a Mutant With
Trap Inorganic Phosphate
Length = 184
Score = 113 bits (282), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 95/168 (56%), Gaps = 17/168 (10%)
Query: 100 NEHLLPPLIS--PDKKTIFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPG 157
++LLP + DK + +DLDETL+HS P DFI+ IDG V YVLKRP
Sbjct: 4 GQYLLPEAKAQDSDKICVVIDLDETLVHSSF-KPVNNADFIIPVEIDGVVHQVYVLKRPH 62
Query: 158 VDAFLDAISKKYEVVVFTAGLKEYASLLLNRLDRNGVISHRLYRDSCKQIDGKFVKDLSE 217
VD FL + + +E V+FTA L +YA + + LD+ G RL+R+SC G +VKDLS
Sbjct: 63 VDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRESCVFHRGNYVKDLSR 122
Query: 218 MGRNLK--------------QPENAIPVKPFTGDPSDIELWKLVNFFE 251
+GR+L+ P+NA+PV + + SD EL L+ FFE
Sbjct: 123 LGRDLRRVLILANSPASYVFHPDNAVPVASWFDNMSDTELHDLLPFFE 170
>pdb|3PGL|A Chain A, Crystal Structure Of Human Small C-Terminal Domain
Phosphatase 1 (Scp1) Bound To Rabeprazole
pdb|3PGL|B Chain B, Crystal Structure Of Human Small C-Terminal Domain
Phosphatase 1 (Scp1) Bound To Rabeprazole
Length = 180
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 95/167 (56%), Gaps = 17/167 (10%)
Query: 101 EHLLPPLIS--PDKKTIFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGV 158
++LLP + DK + +DLDETL+HS P DFI+ IDG V YVLKRP V
Sbjct: 1 QYLLPEAKAQDSDKICVVIDLDETLVHSSF-KPVNNADFIIPVEIDGVVHQVYVLKRPHV 59
Query: 159 DAFLDAISKKYEVVVFTAGLKEYASLLLNRLDRNGVISHRLYRDSCKQIDGKFVKDLSEM 218
D FL + + +E V+FTA L +YA + + LD+ G RL+R+SC G +VKDLS +
Sbjct: 60 DEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRESCVFHRGNYVKDLSRL 119
Query: 219 GRNLK--------------QPENAIPVKPFTGDPSDIELWKLVNFFE 251
GR+L+ P+NA+PV + + SD EL L+ FFE
Sbjct: 120 GRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELHDLLPFFE 166
>pdb|1T9Z|A Chain A, Three-Dimensional Structure Of A Rna-Polymerase Ii Binding
Protein
Length = 197
Score = 112 bits (279), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 94/167 (56%), Gaps = 17/167 (10%)
Query: 101 EHLLPPLIS--PDKKTIFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGV 158
++LLP + DK + +DLDETL+HS P DFI+ IDG V YVLKRP V
Sbjct: 2 QYLLPEAKAQDSDKICVVIDLDETLVHSSFKPV-NNADFIIPVEIDGVVHQVYVLKRPHV 60
Query: 159 DAFLDAISKKYEVVVFTAGLKEYASLLLNRLDRNGVISHRLYRDSCKQIDGKFVKDLSEM 218
D FL + +E V+FTA L +YA + + LD+ G RL+R+SC G +VKDLS +
Sbjct: 61 DEFLQRXGELFECVLFTASLAKYADPVADXLDKWGAFRARLFRESCVFHRGNYVKDLSRL 120
Query: 219 GRNLK--------------QPENAIPVKPFTGDPSDIELWKLVNFFE 251
GR+L+ P+NA+PV + + SD EL L+ FFE
Sbjct: 121 GRDLRRVLIXDNSPASYVFHPDNAVPVASWFDNXSDTELHDLLPFFE 167
>pdb|2GHQ|A Chain A, Ctd-Specific Phosphatase Scp1 In Complex With Peptide C-
Terminal Domain Of Rna Polymerase Ii
pdb|2GHQ|B Chain B, Ctd-Specific Phosphatase Scp1 In Complex With Peptide C-
Terminal Domain Of Rna Polymerase Ii
pdb|2GHT|A Chain A, Ctd-Specific Phosphatase Scp1 In Complex With Peptide From
C-Terminal Domain Of Rna Polymerase Ii
pdb|2GHT|B Chain B, Ctd-Specific Phosphatase Scp1 In Complex With Peptide From
C-Terminal Domain Of Rna Polymerase Ii
Length = 181
Score = 111 bits (278), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 96/168 (57%), Gaps = 17/168 (10%)
Query: 100 NEHLLPPLIS--PDKKTIFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPG 157
+++LLP + DK + ++LDETL+HS P DFI+ IDG V YVLKRP
Sbjct: 1 HQYLLPEAKAQDSDKICVVINLDETLVHSSF-KPVNNADFIIPVEIDGVVHQVYVLKRPH 59
Query: 158 VDAFLDAISKKYEVVVFTAGLKEYASLLLNRLDRNGVISHRLYRDSCKQIDGKFVKDLSE 217
VD FL + + +E V+FTA L +YA + + LD+ G RL+R+SC G +VKDLS
Sbjct: 60 VDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRESCVFHRGNYVKDLSR 119
Query: 218 MGRNLK--------------QPENAIPVKPFTGDPSDIELWKLVNFFE 251
+GR+L+ P+NA+PV + + SD EL L+ FFE
Sbjct: 120 LGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELHDLLPFFE 167
>pdb|3L0B|A Chain A, Crystal Structure Of Scp1 Phosphatase D206a Mutant
Phosphory Intermediate
pdb|3L0B|B Chain B, Crystal Structure Of Scp1 Phosphatase D206a Mutant
Phosphory Intermediate
Length = 184
Score = 110 bits (275), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 94/168 (55%), Gaps = 17/168 (10%)
Query: 100 NEHLLPPLIS--PDKKTIFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPG 157
++LLP + DK + + LDETL+HS P DFI+ IDG V YVLKRP
Sbjct: 4 GQYLLPEAKAQDSDKICVVIXLDETLVHSSF-KPVNNADFIIPVEIDGVVHQVYVLKRPH 62
Query: 158 VDAFLDAISKKYEVVVFTAGLKEYASLLLNRLDRNGVISHRLYRDSCKQIDGKFVKDLSE 217
VD FL + + +E V+FTA L +YA + + LD+ G RL+R+SC G +VKDLS
Sbjct: 63 VDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRESCVFHRGNYVKDLSR 122
Query: 218 MGRNLK--------------QPENAIPVKPFTGDPSDIELWKLVNFFE 251
+GR+L+ P+NA+PV + + SD EL L+ FFE
Sbjct: 123 LGRDLRRVLILANSPASYVFHPDNAVPVASWFDNMSDTELHDLLPFFE 170
>pdb|3L0Y|A Chain A, Crystal Structure Of Scp1 Phosphatase D98a Mutant
pdb|3L0Y|B Chain B, Crystal Structure Of Scp1 Phosphatase D98a Mutant
Length = 184
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 94/168 (55%), Gaps = 17/168 (10%)
Query: 100 NEHLLPPLIS--PDKKTIFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPG 157
++LLP + DK + +DL ETL+HS P DFI+ IDG V YVLKRP
Sbjct: 4 GQYLLPEAKAQDSDKICVVIDLAETLVHSSF-KPVNNADFIIPVEIDGVVHQVYVLKRPH 62
Query: 158 VDAFLDAISKKYEVVVFTAGLKEYASLLLNRLDRNGVISHRLYRDSCKQIDGKFVKDLSE 217
VD FL + + +E V+FTA L +YA + + LD+ G RL+R+SC G +VKDLS
Sbjct: 63 VDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRESCVFHRGNYVKDLSR 122
Query: 218 MGRNLK--------------QPENAIPVKPFTGDPSDIELWKLVNFFE 251
+GR+L+ P+NA+PV + + SD EL L+ FFE
Sbjct: 123 LGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELHDLLPFFE 170
>pdb|1TA0|A Chain A, Three-Dimensional Structure Of A Rna-Polymerase Ii Binding
Protein With Associated Ligand
Length = 197
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 94/167 (56%), Gaps = 17/167 (10%)
Query: 101 EHLLPPLIS--PDKKTIFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGV 158
++LLP + DK + + LDETL+HS P DFI+ IDG V YVLKRP V
Sbjct: 2 QYLLPEAKAQDSDKICVVIXLDETLVHSSFKPV-NNADFIIPVEIDGVVHQVYVLKRPHV 60
Query: 159 DAFLDAISKKYEVVVFTAGLKEYASLLLNRLDRNGVISHRLYRDSCKQIDGKFVKDLSEM 218
D FL + + +E V+FTA L +YA + + LD+ G RL+R+SC G +VKDLS +
Sbjct: 61 DEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRESCVFHRGNYVKDLSRL 120
Query: 219 GRNLK--------------QPENAIPVKPFTGDPSDIELWKLVNFFE 251
GR+L+ P+NA+PV + + SD EL L+ FFE
Sbjct: 121 GRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELHDLLPFFE 167
>pdb|3QLE|A Chain A, Structural Basis For The Function Of Tim50 In The
Mitochondrial Presequence Translocase
Length = 204
Score = 74.7 bits (182), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 74/131 (56%), Gaps = 18/131 (13%)
Query: 154 KRPGVDAFLDAISKKYEVVVFTAGLKEYASLLLNRLD-RNGVISHRLYRDSCKQIDGKFV 212
KRPG D FL +S+ YE+V+F++ Y+ + +LD + +S+ L+++ C DG +
Sbjct: 60 KRPGADYFLGYLSQYYEIVLFSSNYMMYSDKIAEKLDPIHAFVSYNLFKEHCVYKDGVHI 119
Query: 213 KDLSEMGRNLK--------------QPENAIPVKPFTGDPSDIELWKLVNFFE--ACDCF 256
KDLS++ R+L QPENAIP++P+ G+ D +L +L+ F E A
Sbjct: 120 KDLSKLNRDLSKVIIIDTDPNSYKLQPENAIPMEPWNGEADD-KLVRLIPFLEYLATQQT 178
Query: 257 VDMRDAVKAFD 267
D+R + +F+
Sbjct: 179 KDVRPILNSFE 189
>pdb|3EF0|A Chain A, The Structure Of Fcp1, An Essential Rna Polymerase Ii Ctd
Phosphatase
Length = 372
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 20/105 (19%)
Query: 114 TIFLDLDETLIHSKPDPPPERF----------------DFIVRPRIDGEVLNFYVLKRPG 157
++ +DLD+T+IH+ DP + F ++ G +Y+ RPG
Sbjct: 20 SLIVDLDQTIIHATVDPTVGEWMSDPGNVNYDVLRDVRSFNLQEGPSGYTSCYYIKFRPG 79
Query: 158 VDAFLDAISKKYEVVVFTAGLKEYASLLLNRLDRNGVISHRLYRD 202
+ FL IS+ YE+ ++T G K YA + +D G +L++D
Sbjct: 80 LAQFLQKISELYELHIYTMGTKAYAKEVAKIIDPTG----KLFQD 120
>pdb|3EF1|A Chain A, The Structure Of Fcp1, An Essential Rna Polymerase Ii Ctd
Phosphatase
Length = 442
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 20/105 (19%)
Query: 114 TIFLDLDETLIHSKPDPPPERF----------------DFIVRPRIDGEVLNFYVLKRPG 157
++ + LD+T+IH+ DP + F ++ G +Y+ RPG
Sbjct: 28 SLIVXLDQTIIHATVDPTVGEWMSDPGNVNYDVLRDVRSFNLQEGPSGYTSCYYIKFRPG 87
Query: 158 VDAFLDAISKKYEVVVFTAGLKEYASLLLNRLDRNGVISHRLYRD 202
+ FL IS+ YE+ ++T G K YA + +D G +L++D
Sbjct: 88 LAQFLQKISELYELHIYTMGTKAYAKEVAKIIDPTG----KLFQD 128
>pdb|2IUJ|A Chain A, Crystal Structure Of Soybean Lipoxygenase-B
Length = 853
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 52/149 (34%), Gaps = 30/149 (20%)
Query: 45 HTCKRRLARIFSKLVRITTPSRCKTKGYKILRSQD------KDSNSNGEDQLLVPQVLFF 98
HTC + L +T + K IL D + N+N + F
Sbjct: 392 HTCIITKEHLEPNLGGLTVEQAIQNKKLFILDHHDYLIPYLRKINANTTKTYATRTIFFL 451
Query: 99 GNEHLLPPLISPDKKTIFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGV 158
N+ L PL + SKP P E + G V YV GV
Sbjct: 452 KNDGTLTPL--------------AIELSKPHPQGEEY---------GPVSEVYVPSSEGV 488
Query: 159 DAFLDAISKKYEVVVFTAGLKEYASLLLN 187
+A++ ++K Y VVV A + S LN
Sbjct: 489 EAYIWLLAKAY-VVVNDACYHQIISHWLN 516
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.141 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,807,661
Number of Sequences: 62578
Number of extensions: 327876
Number of successful extensions: 774
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 739
Number of HSP's gapped (non-prelim): 16
length of query: 278
length of database: 14,973,337
effective HSP length: 98
effective length of query: 180
effective length of database: 8,840,693
effective search space: 1591324740
effective search space used: 1591324740
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)