Query 044274
Match_columns 278
No_of_seqs 136 out of 1221
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 13:04:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044274.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044274hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1605 TFIIF-interacting CTD 100.0 2.9E-41 6.2E-46 308.6 11.6 158 109-266 86-259 (262)
2 TIGR02251 HIF-SF_euk Dullard-l 100.0 1.8E-37 3.8E-42 265.5 15.8 147 112-258 1-162 (162)
3 PF03031 NIF: NLI interacting 100.0 1.6E-34 3.5E-39 243.7 12.8 143 113-260 1-159 (159)
4 TIGR02245 HAD_IIID1 HAD-superf 100.0 8.9E-34 1.9E-38 250.0 14.4 141 110-267 19-192 (195)
5 KOG2832 TFIIF-interacting CTD 100.0 9.1E-32 2E-36 252.4 11.3 159 102-276 175-354 (393)
6 TIGR02250 FCP1_euk FCP1-like p 99.9 3.2E-25 7E-30 189.2 12.3 123 110-235 4-154 (156)
7 COG5190 FCP1 TFIIF-interacting 99.9 1.7E-24 3.6E-29 207.4 7.7 154 110-264 210-379 (390)
8 smart00577 CPDc catalytic doma 99.9 4.9E-23 1.1E-27 173.1 14.2 131 111-241 1-148 (148)
9 KOG0323 TFIIF-interacting CTD 99.4 9.2E-13 2E-17 133.2 7.3 121 111-235 145-297 (635)
10 TIGR01684 viral_ppase viral ph 98.0 1.7E-05 3.7E-10 74.4 8.1 75 110-206 124-200 (301)
11 PHA03398 viral phosphatase sup 97.9 2.8E-05 6E-10 73.1 7.9 74 111-206 127-202 (303)
12 cd01427 HAD_like Haloacid deha 97.6 0.00015 3.4E-09 56.6 6.2 73 114-202 1-74 (139)
13 PF05152 DUF705: Protein of un 97.5 0.00048 1E-08 64.4 8.2 74 111-205 121-195 (297)
14 COG5190 FCP1 TFIIF-interacting 97.3 0.00014 3E-09 70.7 3.2 90 109-198 23-122 (390)
15 TIGR01685 MDP-1 magnesium-depe 97.3 0.0011 2.5E-08 57.7 8.6 91 113-203 3-106 (174)
16 TIGR01681 HAD-SF-IIIC HAD-supe 97.2 0.00044 9.6E-09 56.7 4.4 66 113-190 1-68 (128)
17 TIGR01662 HAD-SF-IIIA HAD-supe 96.9 0.0022 4.7E-08 51.9 5.8 64 113-192 1-73 (132)
18 TIGR01689 EcbF-BcbF capsule bi 96.9 0.0037 8.1E-08 51.8 6.9 83 113-214 2-99 (126)
19 TIGR01672 AphA HAD superfamily 96.8 0.0014 3.1E-08 59.8 4.7 93 111-203 62-169 (237)
20 TIGR01656 Histidinol-ppas hist 96.7 0.0056 1.2E-07 51.0 6.9 53 113-179 1-54 (147)
21 PRK08942 D,D-heptose 1,7-bisph 96.3 0.025 5.4E-07 48.5 8.5 52 112-178 3-55 (181)
22 TIGR01664 DNA-3'-Pase DNA 3'-p 96.3 0.019 4E-07 49.3 7.7 67 111-191 12-93 (166)
23 COG4996 Predicted phosphatase 96.2 0.022 4.8E-07 48.1 7.6 88 114-202 2-91 (164)
24 PRK11009 aphA acid phosphatase 96.2 0.025 5.5E-07 51.6 8.3 92 111-202 62-170 (237)
25 TIGR00213 GmhB_yaeD D,D-heptos 96.1 0.025 5.5E-07 48.4 7.5 51 113-179 2-53 (176)
26 TIGR01686 FkbH FkbH-like domai 96.1 0.011 2.3E-07 55.7 5.6 74 111-197 2-80 (320)
27 TIGR01261 hisB_Nterm histidino 95.8 0.047 1E-06 46.7 8.1 73 113-200 2-90 (161)
28 TIGR01533 lipo_e_P4 5'-nucleot 95.8 0.018 3.8E-07 53.6 5.8 88 110-203 73-173 (266)
29 TIGR01663 PNK-3'Pase polynucle 95.7 0.046 9.9E-07 55.5 8.6 80 110-205 166-260 (526)
30 PF08645 PNK3P: Polynucleotide 95.7 0.021 4.6E-07 48.8 5.3 51 113-177 1-54 (159)
31 PF12689 Acid_PPase: Acid Phos 95.7 0.058 1.3E-06 46.9 8.1 78 112-192 3-86 (169)
32 PRK08238 hypothetical protein; 95.6 0.05 1.1E-06 54.5 8.5 48 153-203 72-120 (479)
33 PRK13225 phosphoglycolate phos 95.5 0.0069 1.5E-07 56.1 1.8 51 152-202 141-192 (273)
34 TIGR01670 YrbI-phosphatas 3-de 95.5 0.065 1.4E-06 45.1 7.6 69 113-195 2-71 (154)
35 TIGR01668 YqeG_hyp_ppase HAD s 95.1 0.064 1.4E-06 45.9 6.4 59 110-191 23-83 (170)
36 PHA02530 pseT polynucleotide k 94.8 0.062 1.3E-06 49.4 5.9 80 111-202 157-238 (300)
37 PRK05446 imidazole glycerol-ph 94.6 0.15 3.3E-06 49.3 8.3 54 111-177 1-55 (354)
38 PRK00192 mannosyl-3-phosphogly 94.5 0.096 2.1E-06 47.9 6.4 57 112-192 4-61 (273)
39 TIGR01459 HAD-SF-IIA-hyp4 HAD- 93.9 0.14 3.1E-06 46.0 6.0 67 111-202 7-77 (242)
40 PF13344 Hydrolase_6: Haloacid 93.9 0.15 3.1E-06 40.3 5.4 50 115-189 1-51 (101)
41 PF08282 Hydrolase_3: haloacid 93.8 0.15 3.3E-06 44.1 5.9 53 115-191 1-54 (254)
42 COG0561 Cof Predicted hydrolas 93.7 0.17 3.6E-06 45.7 6.2 58 112-193 3-61 (264)
43 TIGR01487 SPP-like sucrose-pho 93.5 0.2 4.3E-06 43.9 6.2 57 113-193 2-59 (215)
44 TIGR01484 HAD-SF-IIB HAD-super 92.9 0.24 5.2E-06 42.8 5.7 54 114-190 1-55 (204)
45 TIGR02463 MPGP_rel mannosyl-3- 92.7 0.27 5.9E-06 43.0 5.8 55 114-192 1-56 (221)
46 COG2179 Predicted hydrolase of 92.6 0.34 7.3E-06 42.4 6.1 62 109-193 25-87 (175)
47 COG0241 HisB Histidinol phosph 92.6 0.49 1.1E-05 41.7 7.2 77 111-202 4-94 (181)
48 TIGR02461 osmo_MPG_phos mannos 92.3 0.32 6.9E-06 43.6 5.9 53 114-191 1-54 (225)
49 COG1877 OtsB Trehalose-6-phosp 92.3 0.32 6.9E-06 45.3 6.0 63 106-187 12-76 (266)
50 PRK10513 sugar phosphate phosp 92.3 0.37 8E-06 43.5 6.3 56 112-191 3-59 (270)
51 PRK09484 3-deoxy-D-manno-octul 91.8 0.88 1.9E-05 39.3 7.9 71 111-195 20-91 (183)
52 PRK01158 phosphoglycolate phos 91.8 0.51 1.1E-05 41.3 6.5 58 112-193 3-61 (230)
53 PRK03669 mannosyl-3-phosphogly 91.5 0.49 1.1E-05 43.1 6.3 57 111-191 6-63 (271)
54 PRK10530 pyridoxal phosphate ( 91.5 0.59 1.3E-05 42.0 6.7 17 112-128 3-19 (272)
55 TIGR00099 Cof-subfamily Cof su 91.5 0.44 9.5E-06 42.8 5.9 55 114-192 1-56 (256)
56 PF13419 HAD_2: Haloacid dehal 91.1 0.61 1.3E-05 37.9 5.9 57 150-206 74-131 (176)
57 PRK15126 thiamin pyrimidine py 91.0 0.59 1.3E-05 42.4 6.2 15 113-127 3-17 (272)
58 PRK10444 UMP phosphatase; Prov 90.8 0.45 9.8E-06 43.4 5.3 53 113-190 2-55 (248)
59 TIGR01486 HAD-SF-IIB-MPGP mann 90.6 0.57 1.2E-05 42.2 5.7 54 114-191 1-55 (256)
60 PRK10187 trehalose-6-phosphate 90.4 0.74 1.6E-05 42.3 6.4 19 111-129 13-31 (266)
61 PLN02645 phosphoglycolate phos 90.3 0.52 1.1E-05 44.2 5.4 54 111-189 27-81 (311)
62 PRK10976 putative hydrolase; P 90.0 0.81 1.8E-05 41.2 6.2 15 113-127 3-17 (266)
63 smart00775 LNS2 LNS2 domain. T 89.9 0.67 1.5E-05 39.4 5.2 62 115-189 2-67 (157)
64 PTZ00174 phosphomannomutase; P 89.6 0.67 1.5E-05 41.8 5.4 42 111-176 4-46 (247)
65 PF09419 PGP_phosphatase: Mito 89.5 0.82 1.8E-05 39.8 5.6 61 107-190 36-106 (168)
66 TIGR01456 CECR5 HAD-superfamil 89.4 0.76 1.7E-05 43.4 5.7 52 113-189 1-61 (321)
67 TIGR02253 CTE7 HAD superfamily 89.3 0.67 1.4E-05 40.3 4.9 54 152-205 93-147 (221)
68 TIGR01458 HAD-SF-IIA-hyp3 HAD- 89.2 0.78 1.7E-05 41.9 5.5 45 113-178 2-47 (257)
69 TIGR01675 plant-AP plant acid 88.8 1.6 3.4E-05 39.9 7.1 88 110-202 75-172 (229)
70 COG2503 Predicted secreted aci 88.7 0.4 8.6E-06 44.3 3.1 83 111-201 78-176 (274)
71 PRK12702 mannosyl-3-phosphogly 88.3 1.4 3E-05 41.9 6.5 57 112-192 1-58 (302)
72 TIGR01452 PGP_euk phosphoglyco 88.1 0.87 1.9E-05 41.8 5.1 41 113-178 3-44 (279)
73 KOG3109 Haloacid dehalogenase- 87.8 0.28 6E-06 44.7 1.5 50 152-202 99-148 (244)
74 TIGR02254 YjjG/YfnB HAD superf 87.3 1.3 2.8E-05 38.3 5.4 55 152-206 96-150 (224)
75 TIGR01482 SPP-subfamily Sucros 87.3 1.2 2.5E-05 38.8 5.2 13 115-127 1-13 (225)
76 PRK09449 dUMP phosphatase; Pro 87.1 1 2.2E-05 39.4 4.6 55 152-206 94-148 (224)
77 TIGR01449 PGP_bact 2-phosphogl 86.9 1.5 3.2E-05 37.8 5.5 53 152-204 84-137 (213)
78 PRK06769 hypothetical protein; 86.5 1 2.2E-05 38.6 4.2 51 112-179 4-55 (173)
79 TIGR01485 SPP_plant-cyano sucr 86.5 1.3 2.8E-05 39.8 5.1 57 112-189 1-58 (249)
80 COG3882 FkbH Predicted enzyme 86.4 0.23 5E-06 49.9 0.2 137 41-186 145-289 (574)
81 TIGR01428 HAD_type_II 2-haloal 86.2 1.6 3.5E-05 37.4 5.4 54 152-205 91-145 (198)
82 PLN03243 haloacid dehalogenase 85.5 1.7 3.6E-05 39.9 5.4 55 152-206 108-163 (260)
83 TIGR00685 T6PP trehalose-phosp 85.4 1.1 2.4E-05 40.4 4.1 43 111-172 2-44 (244)
84 PRK13288 pyrophosphatase PpaX; 85.3 2.2 4.8E-05 37.1 5.9 55 152-206 81-136 (214)
85 PLN02770 haloacid dehalogenase 85.2 2 4.4E-05 38.6 5.8 55 152-206 107-162 (248)
86 PLN02423 phosphomannomutase 85.0 1.9 4.2E-05 39.0 5.5 41 112-176 7-47 (245)
87 TIGR01454 AHBA_synth_RP 3-amin 84.8 2.1 4.6E-05 36.9 5.5 54 152-205 74-128 (205)
88 PLN02887 hydrolase family prot 84.5 3.9 8.5E-05 42.2 8.1 58 110-191 306-364 (580)
89 TIGR01489 DKMTPPase-SF 2,3-dik 84.4 2.9 6.3E-05 34.9 6.1 54 152-205 71-125 (188)
90 TIGR01491 HAD-SF-IB-PSPlk HAD- 84.4 2.5 5.4E-05 35.9 5.7 48 152-199 79-127 (201)
91 COG4359 Uncharacterized conser 84.3 16 0.00034 32.9 10.6 41 152-192 72-113 (220)
92 PRK09552 mtnX 2-hydroxy-3-keto 84.3 1.6 3.4E-05 38.5 4.5 38 152-189 73-111 (219)
93 TIGR02137 HSK-PSP phosphoserin 84.1 1.9 4.1E-05 38.1 5.0 48 152-199 67-114 (203)
94 PRK13582 thrH phosphoserine ph 84.1 1.7 3.8E-05 37.2 4.6 46 152-197 67-112 (205)
95 TIGR01460 HAD-SF-IIA Haloacid 83.9 1.6 3.5E-05 39.1 4.5 49 115-188 1-54 (236)
96 TIGR01457 HAD-SF-IIA-hyp2 HAD- 83.9 2.3 5E-05 38.5 5.5 39 113-176 2-41 (249)
97 PRK13222 phosphoglycolate phos 83.3 3 6.5E-05 36.1 5.8 53 152-204 92-145 (226)
98 PHA02597 30.2 hypothetical pro 83.1 0.7 1.5E-05 39.7 1.7 53 152-204 73-129 (197)
99 PRK14502 bifunctional mannosyl 82.6 3.2 6.9E-05 43.6 6.5 58 110-191 414-472 (694)
100 PRK10725 fructose-1-P/6-phosph 82.3 0.69 1.5E-05 39.1 1.4 52 154-206 89-140 (188)
101 PLN02151 trehalose-phosphatase 82.1 2.5 5.3E-05 41.1 5.2 58 111-187 97-154 (354)
102 PRK11587 putative phosphatase; 81.8 0.72 1.6E-05 40.5 1.4 52 152-204 82-134 (218)
103 TIGR01509 HAD-SF-IA-v3 haloaci 81.4 3.1 6.8E-05 34.5 5.1 53 152-205 84-137 (183)
104 TIGR01544 HAD-SF-IE haloacid d 81.4 2.1 4.6E-05 40.1 4.3 39 152-190 120-159 (277)
105 TIGR01488 HAD-SF-IB Haloacid D 81.4 3.3 7.1E-05 34.4 5.2 48 152-199 72-120 (177)
106 TIGR01548 HAD-SF-IA-hyp1 haloa 81.0 0.85 1.8E-05 39.3 1.5 50 155-204 108-158 (197)
107 TIGR03333 salvage_mtnX 2-hydro 80.8 2.5 5.5E-05 37.1 4.5 41 151-191 68-109 (214)
108 TIGR03351 PhnX-like phosphonat 80.3 1.1 2.3E-05 39.1 1.9 52 152-203 86-140 (220)
109 TIGR03351 PhnX-like phosphonat 80.2 4.4 9.5E-05 35.2 5.7 16 113-128 2-17 (220)
110 PLN02580 trehalose-phosphatase 79.9 3.2 7E-05 40.7 5.2 60 110-188 117-176 (384)
111 TIGR01993 Pyr-5-nucltdase pyri 79.8 2.3 5.1E-05 36.0 3.8 50 153-204 84-133 (184)
112 COG0647 NagD Predicted sugar p 79.6 3.6 7.8E-05 38.4 5.2 54 111-189 7-61 (269)
113 TIGR02253 CTE7 HAD superfamily 79.5 1.1 2.4E-05 38.8 1.8 16 113-128 3-18 (221)
114 TIGR01993 Pyr-5-nucltdase pyri 79.2 1.1 2.3E-05 38.1 1.5 14 114-127 2-15 (184)
115 TIGR02252 DREG-2 REG-2-like, H 79.1 1.2 2.7E-05 38.1 1.9 52 153-205 105-157 (203)
116 PRK13288 pyrophosphatase PpaX; 79.0 1.1 2.3E-05 39.1 1.4 16 112-127 3-18 (214)
117 PRK10826 2-deoxyglucose-6-phos 78.9 5.7 0.00012 34.7 6.1 54 152-205 91-145 (222)
118 TIGR02009 PGMB-YQAB-SF beta-ph 78.7 1.1 2.3E-05 37.7 1.3 52 152-205 87-139 (185)
119 PLN02575 haloacid dehalogenase 78.6 4.1 8.8E-05 39.9 5.5 55 152-206 215-270 (381)
120 PRK11590 hypothetical protein; 78.5 1.2 2.6E-05 39.2 1.6 39 152-190 94-134 (211)
121 TIGR00338 serB phosphoserine p 77.9 6.3 0.00014 34.1 6.0 47 152-198 84-131 (219)
122 PRK13226 phosphoglycolate phos 77.8 1.1 2.4E-05 39.7 1.3 54 152-205 94-148 (229)
123 TIGR02726 phenyl_P_delta pheny 77.8 10 0.00022 32.7 7.2 72 112-196 7-78 (169)
124 TIGR02009 PGMB-YQAB-SF beta-ph 77.5 3.2 6.9E-05 34.7 4.0 15 113-127 2-16 (185)
125 PLN03017 trehalose-phosphatase 77.5 5.3 0.00011 39.0 5.9 59 110-187 109-167 (366)
126 PRK13478 phosphonoacetaldehyde 77.1 1.4 3E-05 40.0 1.7 54 152-205 100-155 (267)
127 TIGR01422 phosphonatase phosph 77.1 5.5 0.00012 35.6 5.6 54 152-205 98-153 (253)
128 PRK13223 phosphoglycolate phos 76.3 1.4 3E-05 40.5 1.4 54 152-205 100-154 (272)
129 TIGR01422 phosphonatase phosph 76.3 1.6 3.4E-05 39.2 1.8 15 113-127 3-17 (253)
130 COG0546 Gph Predicted phosphat 76.2 1.4 3.1E-05 38.9 1.5 53 152-204 88-141 (220)
131 PLN02770 haloacid dehalogenase 75.7 1.4 3.1E-05 39.7 1.3 16 112-127 22-37 (248)
132 PRK10748 flavin mononucleotide 74.8 1.5 3.2E-05 39.2 1.2 47 153-204 113-159 (238)
133 PRK06698 bifunctional 5'-methy 74.7 5.2 0.00011 39.5 5.1 53 152-204 329-382 (459)
134 TIGR01549 HAD-SF-IA-v1 haloaci 74.3 1.4 3E-05 36.0 0.9 52 152-204 63-115 (154)
135 PLN03243 haloacid dehalogenase 73.7 2.1 4.6E-05 39.3 2.0 18 110-127 22-39 (260)
136 TIGR01549 HAD-SF-IA-v1 haloaci 73.7 8 0.00017 31.4 5.3 14 114-127 1-14 (154)
137 COG3769 Predicted hydrolase (H 73.7 12 0.00027 34.4 6.8 58 111-193 6-64 (274)
138 PRK13223 phosphoglycolate phos 73.5 7.8 0.00017 35.6 5.7 16 112-127 13-28 (272)
139 TIGR01428 HAD_type_II 2-haloal 73.2 1.8 3.9E-05 37.0 1.3 15 113-127 2-16 (198)
140 PRK14988 GMP/IMP nucleotidase; 73.1 2 4.2E-05 38.3 1.6 54 152-205 92-146 (224)
141 TIGR01990 bPGM beta-phosphoglu 73.1 1.5 3.4E-05 36.7 0.9 48 153-202 87-135 (185)
142 PRK09449 dUMP phosphatase; Pro 72.9 1.7 3.7E-05 37.9 1.2 14 113-126 4-17 (224)
143 PRK13226 phosphoglycolate phos 72.9 10 0.00022 33.6 6.1 16 112-127 12-27 (229)
144 TIGR02247 HAD-1A3-hyp Epoxide 72.5 2.3 5E-05 36.8 1.8 53 152-204 93-148 (211)
145 TIGR01454 AHBA_synth_RP 3-amin 72.5 1.4 3.1E-05 38.0 0.5 13 115-127 1-13 (205)
146 PRK14988 GMP/IMP nucleotidase; 72.4 6 0.00013 35.1 4.5 17 111-127 9-25 (224)
147 TIGR01680 Veg_Stor_Prot vegeta 72.3 6 0.00013 37.1 4.6 85 111-203 100-198 (275)
148 TIGR02254 YjjG/YfnB HAD superf 72.1 2 4.3E-05 37.1 1.3 16 113-128 2-17 (224)
149 TIGR01491 HAD-SF-IB-PSPlk HAD- 72.1 2.3 4.9E-05 36.1 1.7 16 112-127 4-19 (201)
150 PLN02779 haloacid dehalogenase 71.6 2.2 4.8E-05 39.6 1.6 39 152-190 143-182 (286)
151 PF03767 Acid_phosphat_B: HAD 71.4 2.1 4.6E-05 38.6 1.4 76 110-193 70-156 (229)
152 PRK14501 putative bifunctional 71.4 7.9 0.00017 40.6 5.8 61 110-189 490-552 (726)
153 PRK13222 phosphoglycolate phos 71.4 2.1 4.5E-05 37.1 1.3 16 112-127 6-21 (226)
154 PF06888 Put_Phosphatase: Puta 71.3 13 0.00027 34.1 6.4 58 152-209 70-130 (234)
155 TIGR01548 HAD-SF-IA-hyp1 haloa 71.1 11 0.00024 32.3 5.7 14 114-127 2-15 (197)
156 PRK10826 2-deoxyglucose-6-phos 71.0 2.2 4.7E-05 37.4 1.4 17 111-127 6-22 (222)
157 PRK10725 fructose-1-P/6-phosph 70.9 6.6 0.00014 33.0 4.3 16 112-127 5-20 (188)
158 PLN02954 phosphoserine phospha 70.8 8.1 0.00017 33.6 4.9 41 152-192 83-124 (224)
159 PF13419 HAD_2: Haloacid dehal 70.5 2.1 4.6E-05 34.6 1.1 14 115-128 1-14 (176)
160 TIGR01493 HAD-SF-IA-v2 Haloaci 70.3 2.1 4.6E-05 35.7 1.1 47 152-204 89-135 (175)
161 PTZ00445 p36-lilke protein; Pr 70.2 4.8 0.0001 36.5 3.4 61 110-181 41-104 (219)
162 TIGR01449 PGP_bact 2-phosphogl 69.8 1.8 3.9E-05 37.2 0.5 13 115-127 1-13 (213)
163 PRK10563 6-phosphogluconate ph 69.4 2.4 5.2E-05 36.9 1.3 51 152-204 87-138 (221)
164 TIGR01490 HAD-SF-IB-hyp1 HAD-s 68.8 8.5 0.00018 32.8 4.5 46 153-198 87-133 (202)
165 PRK13582 thrH phosphoserine ph 68.7 2.8 6E-05 36.0 1.5 13 113-125 2-14 (205)
166 TIGR01509 HAD-SF-IA-v3 haloaci 67.4 2.7 5.9E-05 34.9 1.1 15 114-128 1-15 (183)
167 TIGR00338 serB phosphoserine p 66.9 3.4 7.3E-05 35.9 1.7 17 111-127 13-29 (219)
168 COG1011 Predicted hydrolase (H 66.6 11 0.00024 32.5 4.9 55 152-206 98-152 (229)
169 TIGR01489 DKMTPPase-SF 2,3-dik 66.6 3.7 8.1E-05 34.3 1.8 17 112-128 1-17 (188)
170 COG0560 SerB Phosphoserine pho 66.5 12 0.00027 33.3 5.3 52 152-203 76-128 (212)
171 PRK13478 phosphonoacetaldehyde 65.8 15 0.00033 33.2 5.8 15 113-127 5-19 (267)
172 PLN02954 phosphoserine phospha 65.6 3.7 7.9E-05 35.8 1.6 18 111-128 11-28 (224)
173 TIGR02252 DREG-2 REG-2-like, H 65.2 12 0.00027 31.9 4.9 16 113-128 1-16 (203)
174 PLN02382 probable sucrose-phos 62.8 9.9 0.00021 37.4 4.2 17 110-126 7-23 (413)
175 COG0637 Predicted phosphatase/ 62.1 4.2 9E-05 36.2 1.4 68 152-219 85-156 (221)
176 PRK10563 6-phosphogluconate ph 61.5 12 0.00025 32.6 4.1 16 112-127 4-19 (221)
177 PRK06698 bifunctional 5'-methy 60.7 3.8 8.2E-05 40.5 0.9 17 112-128 241-257 (459)
178 TIGR01511 ATPase-IB1_Cu copper 60.5 22 0.00048 36.3 6.4 39 153-191 405-444 (562)
179 COG0546 Gph Predicted phosphat 60.2 28 0.00062 30.6 6.4 18 111-128 3-20 (220)
180 PRK11587 putative phosphatase; 59.9 19 0.00042 31.3 5.2 16 112-127 3-18 (218)
181 COG0637 Predicted phosphatase/ 59.2 7.1 0.00015 34.7 2.3 25 169-193 78-102 (221)
182 KOG3120 Predicted haloacid deh 59.1 8.9 0.00019 35.2 2.9 58 152-209 83-142 (256)
183 PLN02940 riboflavin kinase 58.8 13 0.00027 36.2 4.1 55 152-206 92-148 (382)
184 TIGR01691 enolase-ppase 2,3-di 58.1 23 0.0005 31.8 5.4 47 153-199 95-145 (220)
185 PLN02575 haloacid dehalogenase 57.9 5.7 0.00012 38.9 1.6 18 110-127 129-146 (381)
186 TIGR02471 sucr_syn_bact_C sucr 57.5 9 0.0002 33.9 2.7 13 114-126 1-13 (236)
187 PF05116 S6PP: Sucrose-6F-phos 57.1 10 0.00023 34.3 3.1 13 112-124 2-14 (247)
188 PLN02940 riboflavin kinase 56.7 5.4 0.00012 38.7 1.2 16 112-127 11-26 (382)
189 COG1011 Predicted hydrolase (H 56.3 6.5 0.00014 34.0 1.6 18 111-128 3-20 (229)
190 TIGR02244 HAD-IG-Ncltidse HAD 56.2 19 0.00041 34.8 4.8 52 149-200 180-240 (343)
191 PRK09552 mtnX 2-hydroxy-3-keto 55.6 6.5 0.00014 34.5 1.4 17 112-128 3-19 (219)
192 COG0560 SerB Phosphoserine pho 53.9 7.1 0.00015 34.8 1.4 15 111-125 4-18 (212)
193 PRK11590 hypothetical protein; 53.8 21 0.00045 31.2 4.4 17 111-127 5-21 (211)
194 TIGR01545 YfhB_g-proteo haloac 53.6 7.9 0.00017 34.3 1.7 37 153-189 94-132 (210)
195 PRK09456 ?-D-glucose-1-phospha 53.5 7.5 0.00016 33.5 1.5 56 151-206 82-139 (199)
196 TIGR02137 HSK-PSP phosphoserin 53.1 7 0.00015 34.5 1.2 13 114-126 3-15 (203)
197 PF12710 HAD: haloacid dehalog 52.2 17 0.00036 30.4 3.4 45 155-199 87-138 (192)
198 TIGR01545 YfhB_g-proteo haloac 51.2 34 0.00073 30.2 5.3 18 111-128 4-21 (210)
199 PF02358 Trehalose_PPase: Treh 50.9 17 0.00036 32.4 3.3 51 116-185 1-53 (235)
200 PLN02779 haloacid dehalogenase 50.9 31 0.00068 31.9 5.3 16 112-127 40-55 (286)
201 PRK11133 serB phosphoserine ph 49.4 10 0.00022 36.1 1.8 42 152-193 180-222 (322)
202 TIGR02247 HAD-1A3-hyp Epoxide 47.9 20 0.00043 30.9 3.3 15 113-127 3-17 (211)
203 TIGR01990 bPGM beta-phosphoglu 46.5 33 0.00072 28.5 4.3 15 114-128 1-15 (185)
204 COG4502 5'(3')-deoxyribonucleo 45.8 14 0.00031 31.7 1.9 30 152-181 67-96 (180)
205 PRK09456 ?-D-glucose-1-phospha 43.3 35 0.00075 29.2 4.1 14 114-127 2-15 (199)
206 TIGR01490 HAD-SF-IB-hyp1 HAD-s 43.0 12 0.00026 31.9 1.0 14 115-128 2-15 (202)
207 PLN02919 haloacid dehalogenase 41.9 49 0.0011 36.6 5.8 53 154-206 162-216 (1057)
208 KOG2134 Polynucleotide kinase 40.6 53 0.0012 32.5 5.2 57 110-178 73-130 (422)
209 TIGR01478 STEVOR variant surfa 40.4 27 0.00058 33.1 3.0 31 239-277 56-87 (295)
210 cd06537 CIDE_N_B CIDE_N domain 40.3 58 0.0012 25.2 4.3 16 112-127 39-54 (81)
211 PLN02205 alpha,alpha-trehalose 40.1 54 0.0012 35.5 5.7 59 110-189 594-654 (854)
212 PLN02811 hydrolase 40.1 42 0.00091 29.3 4.1 50 153-202 78-129 (220)
213 PLN02177 glycerol-3-phosphate 39.7 21 0.00046 36.2 2.4 19 170-188 124-142 (497)
214 PF00702 Hydrolase: haloacid d 39.6 68 0.0015 26.9 5.3 41 152-192 126-167 (215)
215 PRK11133 serB phosphoserine ph 39.3 51 0.0011 31.4 4.8 17 110-126 108-124 (322)
216 TIGR01525 ATPase-IB_hvy heavy 39.3 79 0.0017 32.1 6.5 44 153-196 384-429 (556)
217 cd06539 CIDE_N_A CIDE_N domain 38.9 53 0.0012 25.2 3.9 16 112-127 40-55 (78)
218 PLN03064 alpha,alpha-trehalose 38.6 53 0.0011 36.0 5.3 70 110-189 589-660 (934)
219 PLN03063 alpha,alpha-trehalose 38.2 55 0.0012 35.1 5.3 64 110-189 505-570 (797)
220 PF08235 LNS2: LNS2 (Lipin/Ned 37.8 80 0.0017 27.2 5.3 49 115-176 2-51 (157)
221 TIGR01493 HAD-SF-IA-v2 Haloaci 37.7 15 0.00033 30.4 0.9 13 115-127 2-14 (175)
222 PTZ00370 STEVOR; Provisional 37.1 32 0.00069 32.6 3.0 31 239-277 55-86 (296)
223 PHA02597 30.2 hypothetical pro 36.2 32 0.0007 29.2 2.7 16 112-127 2-17 (197)
224 PF05822 UMPH-1: Pyrimidine 5' 36.0 43 0.00093 31.0 3.6 38 152-189 89-127 (246)
225 PLN02499 glycerol-3-phosphate 35.0 29 0.00063 35.3 2.5 19 170-188 110-128 (498)
226 KOG3189 Phosphomannomutase [Li 34.0 65 0.0014 29.4 4.3 56 111-190 9-70 (252)
227 cd06538 CIDE_N_FSP27 CIDE_N do 33.8 69 0.0015 24.6 3.8 15 113-127 40-54 (79)
228 PRK10748 flavin mononucleotide 32.8 51 0.0011 29.3 3.5 16 112-127 10-25 (238)
229 PF00702 Hydrolase: haloacid d 32.2 28 0.0006 29.4 1.6 15 113-127 2-16 (215)
230 cd06536 CIDE_N_ICAD CIDE_N dom 32.1 76 0.0017 24.4 3.8 17 111-127 41-57 (80)
231 PF04312 DUF460: Protein of un 31.6 29 0.00063 29.4 1.6 74 116-190 47-120 (138)
232 smart00266 CAD Domains present 30.8 78 0.0017 24.0 3.6 16 112-127 38-53 (74)
233 PLN02919 haloacid dehalogenase 30.2 28 0.00061 38.5 1.6 16 112-127 75-90 (1057)
234 cd01615 CIDE_N CIDE_N domain, 29.7 84 0.0018 24.0 3.7 17 111-127 39-55 (78)
235 PF11019 DUF2608: Protein of u 28.3 32 0.0007 31.6 1.4 14 111-124 19-32 (252)
236 PF02017 CIDE-N: CIDE-N domain 24.6 43 0.00094 25.6 1.3 16 112-127 40-55 (78)
237 cd06535 CIDE_N_CAD CIDE_N doma 22.6 1.3E+02 0.0028 23.0 3.6 13 112-124 40-52 (77)
238 COG3700 AphA Acid phosphatase 21.2 1.1E+02 0.0024 27.5 3.4 67 107-193 58-130 (237)
No 1
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=100.00 E-value=2.9e-41 Score=308.63 Aligned_cols=158 Identities=51% Similarity=0.781 Sum_probs=149.3
Q ss_pred CCCCeEEEEeCCCceeeccC-CCCCCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHhhcceEEEEcCCchHHHHHHHH
Q 044274 109 SPDKKTIFLDLDETLIHSKP-DPPPERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAISKKYEVVVFTAGLKEYASLLLN 187 (278)
Q Consensus 109 ~~~KktLVLDLDeTLIhs~~-~~~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~~~fEIvI~Taa~~~YA~~vl~ 187 (278)
..+|+||||||||||||++. .++....||++++++++....+||.+|||+++||+.++++||+|||||+.+.||++|++
T Consensus 86 ~~~kk~lVLDLDeTLvHss~~~~~~~~~d~~~~v~~~~~~~~~yV~kRP~vdeFL~~~s~~~e~v~FTAs~~~Ya~~v~D 165 (262)
T KOG1605|consen 86 TVGRKTLVLDLDETLVHSSLNLKPIVNADFTVPVEIDGHIHQVYVRKRPHVDEFLSRVSKWYELVLFTASLEVYADPLLD 165 (262)
T ss_pred cCCCceEEEeCCCcccccccccCCCCCcceeeeeeeCCcceEEEEEcCCCHHHHHHHhHHHHHHHHHHhhhHHHHHHHHH
Confidence 46899999999999999995 44335789999999999999999999999999999999999999999999999999999
Q ss_pred HhCC-CCcccEEEecCCccccCCceecccccccCCCC--------------CCCCeeecCCCCCCCCchHHHHHHHHHHh
Q 044274 188 RLDR-NGVISHRLYRDSCKQIDGKFVKDLSEMGRNLK--------------QPENAIPVKPFTGDPSDIELWKLVNFFEA 252 (278)
Q Consensus 188 ~LDp-~~~f~~~l~R~~c~~~~g~~~KDL~~l~rdl~--------------qp~N~I~I~~F~gd~~D~eLl~L~~~L~~ 252 (278)
.||+ .++|.+|+||++|+..+|.|+|||+.+|+|+. ||+|||||++|.+++.|+||++|+|||++
T Consensus 166 ~LD~~~~i~~~RlyR~~C~~~~g~yvKdls~~~~dL~~viIiDNsP~sy~~~p~NgIpI~sw~~d~~D~eLL~LlpfLe~ 245 (262)
T KOG1605|consen 166 ILDPDRKIISHRLYRDSCTLKDGNYVKDLSVLGRDLSKVIIVDNSPQSYRLQPENGIPIKSWFDDPTDTELLKLLPFLEA 245 (262)
T ss_pred HccCCCCeeeeeecccceEeECCcEEEEcceeccCcccEEEEcCChHHhccCccCCCcccccccCCChHHHHHHHHHHHH
Confidence 9999 55999999999999999999999999999996 99999999999999999999999999999
Q ss_pred cCCCCcHHHHHHhc
Q 044274 253 CDCFVDMRDAVKAF 266 (278)
Q Consensus 253 L~~~~DVR~~lk~~ 266 (278)
|+.++|||++++..
T Consensus 246 L~~~~Dvr~~l~~~ 259 (262)
T KOG1605|consen 246 LAFVDDVRPILARR 259 (262)
T ss_pred hcccccHHHHHHHh
Confidence 99999999999863
No 2
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=100.00 E-value=1.8e-37 Score=265.49 Aligned_cols=147 Identities=54% Similarity=0.868 Sum_probs=138.4
Q ss_pred CeEEEEeCCCceeeccCCCCCCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHhhcceEEEEcCCchHHHHHHHHHhCC
Q 044274 112 KKTIFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAISKKYEVVVFTAGLKEYASLLLNRLDR 191 (278)
Q Consensus 112 KktLVLDLDeTLIhs~~~~~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~~~fEIvI~Taa~~~YA~~vl~~LDp 191 (278)
|+||||||||||||++..+....+||.+.+..++....+||++|||+++||++|+++|||+|||++.+.||+++++.|||
T Consensus 1 k~~lvlDLDeTLi~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RPgl~eFL~~l~~~yei~I~Ts~~~~yA~~il~~ldp 80 (162)
T TIGR02251 1 KKTLVLDLDETLVHSTFKMPKVDADFKVPVLIDGKIIPVYVFKRPHVDEFLERVSKWYELVIFTASLEEYADPVLDILDR 80 (162)
T ss_pred CcEEEEcCCCCcCCCCCCCCCCCCceEEEEEecCcEEEEEEEECCCHHHHHHHHHhcCEEEEEcCCcHHHHHHHHHHHCc
Confidence 68999999999999988875447888888878888899999999999999999999999999999999999999999999
Q ss_pred CC-cccEEEecCCccccCCceecccccccCCCC--------------CCCCeeecCCCCCCCCchHHHHHHHHHHhcCCC
Q 044274 192 NG-VISHRLYRDSCKQIDGKFVKDLSEMGRNLK--------------QPENAIPVKPFTGDPSDIELWKLVNFFEACDCF 256 (278)
Q Consensus 192 ~~-~f~~~l~R~~c~~~~g~~~KDL~~l~rdl~--------------qp~N~I~I~~F~gd~~D~eLl~L~~~L~~L~~~ 256 (278)
.+ +|.+++||++|....|.++|||+.+|++++ ||+|||+|.+|.|+.+|++|.+|++||+.|+.+
T Consensus 81 ~~~~f~~~l~r~~~~~~~~~~~K~L~~l~~~~~~vIiVDD~~~~~~~~~~NgI~i~~f~~~~~D~~L~~l~~~L~~l~~~ 160 (162)
T TIGR02251 81 GGKVISRRLYRESCVFTNGKYVKDLSLVGKDLSKVIIIDNSPYSYSLQPDNAIPIKSWFGDPNDTELLNLIPFLEGLRFE 160 (162)
T ss_pred CCCEEeEEEEccccEEeCCCEEeEchhcCCChhhEEEEeCChhhhccCccCEeecCCCCCCCCHHHHHHHHHHHHHHhcc
Confidence 88 999999999999988889999999999876 899999999999999999999999999999988
Q ss_pred Cc
Q 044274 257 VD 258 (278)
Q Consensus 257 ~D 258 (278)
+|
T Consensus 161 ~~ 162 (162)
T TIGR02251 161 DD 162 (162)
T ss_pred CC
Confidence 76
No 3
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=100.00 E-value=1.6e-34 Score=243.70 Aligned_cols=143 Identities=50% Similarity=0.866 Sum_probs=114.9
Q ss_pred eEEEEeCCCceeeccCCCCCCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHhhcceEEEEcCCchHHHHHHHHHhCCC
Q 044274 113 KTIFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAISKKYEVVVFTAGLKEYASLLLNRLDRN 192 (278)
Q Consensus 113 ktLVLDLDeTLIhs~~~~~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~~~fEIvI~Taa~~~YA~~vl~~LDp~ 192 (278)
|||||||||||||+...+.. ..|+.+. + ...++++++|||+++||++++++|||+|||++++.||+.|++.|||+
T Consensus 1 k~LVlDLD~TLv~~~~~~~~-~~~~~~~---~-~~~~~~v~~RP~l~~FL~~l~~~~ev~i~T~~~~~ya~~v~~~ldp~ 75 (159)
T PF03031_consen 1 KTLVLDLDGTLVHSSSKSPL-PYDFKII---D-QRGGYYVKLRPGLDEFLEELSKHYEVVIWTSASEEYAEPVLDALDPN 75 (159)
T ss_dssp EEEEEE-CTTTEEEESSTCT-T-SEEEE---T-EEEEEEEEE-TTHHHHHHHHHHHCEEEEE-SS-HHHHHHHHHHHTTT
T ss_pred CEEEEeCCCcEEEEeecCCC-Cccccee---c-cccceeEeeCchHHHHHHHHHHhceEEEEEeehhhhhhHHHHhhhhh
Confidence 69999999999999887643 3344322 2 45689999999999999999999999999999999999999999996
Q ss_pred C-cccEEEecCCccccCCceecccccccCCCC--------------CCCCeeecCCCCCC-CCchHHHHHHHHHHhcCCC
Q 044274 193 G-VISHRLYRDSCKQIDGKFVKDLSEMGRNLK--------------QPENAIPVKPFTGD-PSDIELWKLVNFFEACDCF 256 (278)
Q Consensus 193 ~-~f~~~l~R~~c~~~~g~~~KDL~~l~rdl~--------------qp~N~I~I~~F~gd-~~D~eLl~L~~~L~~L~~~ 256 (278)
+ .|.++|||++|....|.++|||+.+|+++. ||+|+|+|++|.++ .+|++|.+|++||+.|+.+
T Consensus 76 ~~~~~~~~~r~~~~~~~~~~~KdL~~l~~~~~~vvivDD~~~~~~~~~~N~i~v~~f~~~~~~D~~L~~l~~~L~~l~~~ 155 (159)
T PF03031_consen 76 GKLFSRRLYRDDCTFDKGSYIKDLSKLGRDLDNVVIVDDSPRKWALQPDNGIPVPPFFGDTPNDRELLRLLPFLEELAKE 155 (159)
T ss_dssp TSSEEEEEEGGGSEEETTEEE--GGGSSS-GGGEEEEES-GGGGTTSGGGEEE----SSCHTT--HHHHHHHHHHHHHTH
T ss_pred ccccccccccccccccccccccchHHHhhccccEEEEeCCHHHeeccCCceEEeccccCCCcchhHHHHHHHHHHHhCcc
Confidence 6 899999999999888878999999998766 89999999999999 8999999999999999999
Q ss_pred CcHH
Q 044274 257 VDMR 260 (278)
Q Consensus 257 ~DVR 260 (278)
+|||
T Consensus 156 ~Dvr 159 (159)
T PF03031_consen 156 DDVR 159 (159)
T ss_dssp S-CH
T ss_pred cCCC
Confidence 9998
No 4
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=100.00 E-value=8.9e-34 Score=250.01 Aligned_cols=141 Identities=24% Similarity=0.330 Sum_probs=118.5
Q ss_pred CCCeEEEEeCCCceeeccCCCCCCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHhhcceEEEEcCCchHHHHHHHHHh
Q 044274 110 PDKKTIFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAISKKYEVVVFTAGLKEYASLLLNRL 189 (278)
Q Consensus 110 ~~KktLVLDLDeTLIhs~~~~~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~~~fEIvI~Taa~~~YA~~vl~~L 189 (278)
++|+||||||||||||+..... ++++.+|||+++||+.++++|||+||||+++.||+.+++.|
T Consensus 19 ~~kklLVLDLDeTLvh~~~~~~-----------------~~~~~kRP~l~eFL~~~~~~feIvVwTAa~~~ya~~~l~~l 81 (195)
T TIGR02245 19 EGKKLLVLDIDYTLFDHRSPAE-----------------TGEELMRPYLHEFLTSAYEDYDIVIWSATSMKWIEIKMTEL 81 (195)
T ss_pred CCCcEEEEeCCCceEcccccCC-----------------CceEEeCCCHHHHHHHHHhCCEEEEEecCCHHHHHHHHHHh
Confidence 5899999999999999753221 35678999999999999999999999999999999999999
Q ss_pred CCCC--cccEEEecCCccc------cCCc-eecccccccCC------CC--------------CCCCeeecCCCCC----
Q 044274 190 DRNG--VISHRLYRDSCKQ------IDGK-FVKDLSEMGRN------LK--------------QPENAIPVKPFTG---- 236 (278)
Q Consensus 190 Dp~~--~f~~~l~R~~c~~------~~g~-~~KDL~~l~rd------l~--------------qp~N~I~I~~F~g---- 236 (278)
++.. .+...++.++|.. ..|. ++|||+.+|++ ++ ||+|||+|++|.+
T Consensus 82 ~~~~~~~~~i~~~ld~~~~~~~~~~~~g~~~vKdL~~lw~~l~~~~~~~ntiiVDd~p~~~~~~P~N~i~I~~f~~~~~~ 161 (195)
T TIGR02245 82 GVLTNPNYKITFLLDSTAMITVHTPRRGKFDVKPLGVIWALLPEFYSMKNTIMFDDLRRNFLMNPQNGLKIRPFKKAHAN 161 (195)
T ss_pred cccCCccceEEEEeccccceeeEeeccCcEEEeecHHhhhhcccCCCcccEEEEeCCHHHHhcCCCCccccCCccccCCC
Confidence 7643 4555666688732 3444 59999999763 33 9999999999995
Q ss_pred CCCchHHHHHHHHHHhcCCCCcHHHHHHhcC
Q 044274 237 DPSDIELWKLVNFFEACDCFVDMRDAVKAFD 267 (278)
Q Consensus 237 d~~D~eLl~L~~~L~~L~~~~DVR~~lk~~~ 267 (278)
+.+|+||++|++||+.|+.++|||++.++++
T Consensus 162 ~~~D~eL~~L~~yL~~la~~~Dvr~~~~~~w 192 (195)
T TIGR02245 162 RGTDQELLKLTQYLKTIAELEDFSSLDHKEW 192 (195)
T ss_pred CcccHHHHHHHHHHHHHhcCcccchhhhccc
Confidence 4689999999999999999999999999754
No 5
>KOG2832 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=99.97 E-value=9.1e-32 Score=252.44 Aligned_cols=159 Identities=33% Similarity=0.584 Sum_probs=144.0
Q ss_pred CCCCC----CCCCCCeEEEEeCCCceeeccCCCCCCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHhhcceEEEEcCC
Q 044274 102 HLLPP----LISPDKKTIFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAISKKYEVVVFTAG 177 (278)
Q Consensus 102 ~lLPp----~~~~~KktLVLDLDeTLIhs~~~~~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~~~fEIvI~Taa 177 (278)
++||+ +..+.++||||||.++|||..+.. ..+|.+.+|||++.||.++++.|||||||+.
T Consensus 175 ~LLPdpl~pPy~Qp~yTLVleledvLVhpdws~----------------~tGwRf~kRPgvD~FL~~~a~~yEIVi~sse 238 (393)
T KOG2832|consen 175 KLLPDPLPPPYEQPPYTLVLELEDVLVHPDWSY----------------KTGWRFKKRPGVDYFLGHLAKYYEIVVYSSE 238 (393)
T ss_pred hhCCCCCCCcccCCCceEEEEeeeeEeccchhh----------------hcCceeccCchHHHHHHhhcccceEEEEecC
Confidence 46664 223579999999999999997753 2478899999999999999999999999999
Q ss_pred chHHHHHHHHHhCCCCcccEEEecCCccccCCceecccccccCCCC--------------CCCCeeecCCCCCCCCchHH
Q 044274 178 LKEYASLLLNRLDRNGVISHRLYRDSCKQIDGKFVKDLSEMGRNLK--------------QPENAIPVKPFTGDPSDIEL 243 (278)
Q Consensus 178 ~~~YA~~vl~~LDp~~~f~~~l~R~~c~~~~g~~~KDL~~l~rdl~--------------qp~N~I~I~~F~gd~~D~eL 243 (278)
...|+.++++.|||+|+++++|+|++|...+|+++|||+.|+||+. ||+|.|++.+|.|+.+|+.|
T Consensus 239 ~gmt~~pl~d~lDP~g~IsYkLfr~~t~y~~G~HvKdls~LNRdl~kVivVd~d~~~~~l~P~N~l~l~~W~Gn~dDt~L 318 (393)
T KOG2832|consen 239 QGMTVFPLLDALDPKGYISYKLFRGATKYEEGHHVKDLSKLNRDLQKVIVVDFDANSYKLQPENMLPLEPWSGNDDDTSL 318 (393)
T ss_pred CccchhhhHhhcCCcceEEEEEecCcccccCccchhhhhhhccccceeEEEEccccccccCcccccccCcCCCCcccchh
Confidence 9999999999999999999999999999999999999999999997 99999999999999999999
Q ss_pred HHHHHHHHhcC--CCCcHHHHHHhcCC-Cchhhhhh
Q 044274 244 WKLVNFFEACD--CFVDMRDAVKAFDL-GERYEKLE 276 (278)
Q Consensus 244 l~L~~~L~~L~--~~~DVR~~lk~~~~-~~~~~~~~ 276 (278)
.+|++||+.++ +++|||++|..|.+ .+..++++
T Consensus 319 ~dL~~FL~~ia~~~~eDvR~vL~~y~~~~D~~~~F~ 354 (393)
T KOG2832|consen 319 FDLLAFLEYIAQQQVEDVRPVLQSYSQEKDPAKEFR 354 (393)
T ss_pred hhHHHHHHHHHHccHHHHHHHHHHhccccCHHHHHH
Confidence 99999999986 67999999999987 55555544
No 6
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=99.92 E-value=3.2e-25 Score=189.17 Aligned_cols=123 Identities=28% Similarity=0.476 Sum_probs=98.7
Q ss_pred CCCeEEEEeCCCceeeccCCCCCCCCce-EEe----------eccCCceeeEEEEeCcCHHHHHHHHhhcceEEEEcCCc
Q 044274 110 PDKKTIFLDLDETLIHSKPDPPPERFDF-IVR----------PRIDGEVLNFYVLKRPGVDAFLDAISKKYEVVVFTAGL 178 (278)
Q Consensus 110 ~~KktLVLDLDeTLIhs~~~~~~~~~Df-~v~----------~~~~~~~~~~~v~~RP~l~eFL~~l~~~fEIvI~Taa~ 178 (278)
.+|++|||||||||||+...+..+.... ... ....-....+++++|||+++||+.+++.|+++|||++.
T Consensus 4 ~~kl~LVLDLDeTLihs~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~rPgv~efL~~l~~~yel~I~T~~~ 83 (156)
T TIGR02250 4 EKKLHLVLDLDQTLIHTTKDPTLSEWEKYDIEEPNSETRRDLRKFNLGTMWYLTKLRPFLHEFLKEASKLYEMHVYTMGT 83 (156)
T ss_pred CCceEEEEeCCCCcccccccCccchhhhcccccCCccccccceEEEcCCeEEEEEECCCHHHHHHHHHhhcEEEEEeCCc
Confidence 5899999999999999987753211000 000 00111135689999999999999999999999999999
Q ss_pred hHHHHHHHHHhCCCC-cccEE-EecCCccccCCceeccccc-ccCCCC--------------CCCCeeecCCCC
Q 044274 179 KEYASLLLNRLDRNG-VISHR-LYRDSCKQIDGKFVKDLSE-MGRNLK--------------QPENAIPVKPFT 235 (278)
Q Consensus 179 ~~YA~~vl~~LDp~~-~f~~~-l~R~~c~~~~g~~~KDL~~-l~rdl~--------------qp~N~I~I~~F~ 235 (278)
+.||+.+++.|||.+ +|.++ ++|++|. |.++|||+. +|+|++ ||+|+|+|++|.
T Consensus 84 ~~yA~~vl~~ldp~~~~F~~ri~~rd~~~---~~~~KdL~~i~~~d~~~vvivDd~~~~~~~~~~N~i~i~~~~ 154 (156)
T TIGR02250 84 RAYAQAIAKLIDPDGKYFGDRIISRDESG---SPHTKSLLRLFPADESMVVIIDDREDVWPWHKRNLIQIEPYN 154 (156)
T ss_pred HHHHHHHHHHhCcCCCeeccEEEEeccCC---CCccccHHHHcCCCcccEEEEeCCHHHhhcCccCEEEeCCcc
Confidence 999999999999997 88555 6799996 778999954 588876 999999999996
No 7
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=99.90 E-value=1.7e-24 Score=207.38 Aligned_cols=154 Identities=43% Similarity=0.652 Sum_probs=144.6
Q ss_pred CCCeEEEEeCCCceeeccCCCCCCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHhhcceEEEEcCCchHHHHHHHHHh
Q 044274 110 PDKKTIFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAISKKYEVVVFTAGLKEYASLLLNRL 189 (278)
Q Consensus 110 ~~KktLVLDLDeTLIhs~~~~~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~~~fEIvI~Taa~~~YA~~vl~~L 189 (278)
..+++|++|||+||+|+...-. ...||.+....++....+||.+||++++||..+++.|++++||++.+.||++|++.|
T Consensus 210 ~~~k~L~l~lde~l~~S~~~~~-~~~df~~~~e~~~~~~~~~v~kRp~l~~fl~~ls~~~~l~~ft~s~~~y~~~v~d~l 288 (390)
T COG5190 210 SPKKTLVLDLDETLVHSSFRYI-TLLDFLVKVEISLLQHLVYVSKRPELDYFLGKLSKIHELVYFTASVKRYADPVLDIL 288 (390)
T ss_pred CCccccccCCCccceeeccccc-cccchhhccccccceeEEEEcCChHHHHHHhhhhhhEEEEEEecchhhhcchHHHhc
Confidence 4799999999999999988765 356788888888888999999999999999999999999999999999999999999
Q ss_pred CCCCcccEEEecCCccccCCceecccccccCCCC--------------CCCCeeecCCCCCCCCchHHHHHHHHHHhcCC
Q 044274 190 DRNGVISHRLYRDSCKQIDGKFVKDLSEMGRNLK--------------QPENAIPVKPFTGDPSDIELWKLVNFFEACDC 255 (278)
Q Consensus 190 Dp~~~f~~~l~R~~c~~~~g~~~KDL~~l~rdl~--------------qp~N~I~I~~F~gd~~D~eLl~L~~~L~~L~~ 255 (278)
|+.+.|.+++||++|....|.|+|||..+++++. +|+|+|+|.+|.+++.|.+|..|+++|+.|..
T Consensus 289 ~~~k~~~~~lfr~sc~~~~G~~ikDis~i~r~l~~viiId~~p~SY~~~p~~~i~i~~W~~d~~d~el~~ll~~le~L~~ 368 (390)
T COG5190 289 DSDKVFSHRLFRESCVSYLGVYIKDISKIGRSLDKVIIIDNSPASYEFHPENAIPIEKWISDEHDDELLNLLPFLEDLPD 368 (390)
T ss_pred cccceeehhhhcccceeccCchhhhHHhhccCCCceEEeeCChhhhhhCccceeccCcccccccchhhhhhccccccccc
Confidence 9999999999999999999999999999999987 99999999999999999999999999999987
Q ss_pred --CCcHHHHHH
Q 044274 256 --FVDMRDAVK 264 (278)
Q Consensus 256 --~~DVR~~lk 264 (278)
..||+..+-
T Consensus 369 ~~~~d~~~~l~ 379 (390)
T COG5190 369 RDLKDVSSILQ 379 (390)
T ss_pred ccchhhhhhhh
Confidence 899998875
No 8
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=99.90 E-value=4.9e-23 Score=173.14 Aligned_cols=131 Identities=53% Similarity=0.819 Sum_probs=115.6
Q ss_pred CCeEEEEeCCCceeeccCCCC--CCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHhhcceEEEEcCCchHHHHHHHHH
Q 044274 111 DKKTIFLDLDETLIHSKPDPP--PERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAISKKYEVVVFTAGLKEYASLLLNR 188 (278)
Q Consensus 111 ~KktLVLDLDeTLIhs~~~~~--~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~~~fEIvI~Taa~~~YA~~vl~~ 188 (278)
+|++|||||||||||+..... ....++.+.+.++++...+++..|||+.+||++|.+.|+++|||++..+|++.+++.
T Consensus 1 ~k~~lvldld~tl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~pG~~e~L~~L~~~~~l~I~Ts~~~~~~~~il~~ 80 (148)
T smart00577 1 KKKTLVLDLDETLVHSTHRSFKEWTNRDFIVPVLIDGHPHGVYVKKRPGVDEFLKRASELFELVVFTAGLRMYADPVLDL 80 (148)
T ss_pred CCcEEEEeCCCCeECCCCCcCCCCCccceEEEEEeCCceEEEEEEECCCHHHHHHHHHhccEEEEEeCCcHHHHHHHHHH
Confidence 589999999999999964222 234567787888888999999999999999999999999999999999999999999
Q ss_pred hCCCC-cccEEEecCCccccCCceecccccccCCCC--------------CCCCeeecCCCCCCCCch
Q 044274 189 LDRNG-VISHRLYRDSCKQIDGKFVKDLSEMGRNLK--------------QPENAIPVKPFTGDPSDI 241 (278)
Q Consensus 189 LDp~~-~f~~~l~R~~c~~~~g~~~KDL~~l~rdl~--------------qp~N~I~I~~F~gd~~D~ 241 (278)
+++.. +|..++++++|....+.|.|+|+.+|.+.+ ++.|||+|++|.|+.+|+
T Consensus 81 l~~~~~~f~~i~~~~d~~~~KP~~~k~l~~l~~~p~~~i~i~Ds~~~~~aa~~ngI~i~~f~~~~~d~ 148 (148)
T smart00577 81 LDPKKYFGYRRLFRDECVFVKGKYVKDLSLLGRDLSNVIIIDDSPDSWPFHPENLIPIKPWFGDPDDT 148 (148)
T ss_pred hCcCCCEeeeEEECccccccCCeEeecHHHcCCChhcEEEEECCHHHhhcCccCEEEecCcCCCCCCC
Confidence 99966 679999999999877679999999998765 899999999999998874
No 9
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=99.36 E-value=9.2e-13 Score=133.15 Aligned_cols=121 Identities=28% Similarity=0.389 Sum_probs=87.8
Q ss_pred CCeEEEEeCCCceeeccCCCCC---------------CCCceEEeeccCCceeeEEEEeCcCHHHHHHHHhhcceEEEEc
Q 044274 111 DKKTIFLDLDETLIHSKPDPPP---------------ERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAISKKYEVVVFT 175 (278)
Q Consensus 111 ~KktLVLDLDeTLIhs~~~~~~---------------~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~~~fEIvI~T 175 (278)
.++.||+|||.||+|+...+.. +.-|.. .....+....+|+++|||+++||+++++.||++|||
T Consensus 145 ~~L~lv~Dld~tllh~~~~~~l~e~~~~l~~~~~~~~sn~dl~-~~~~~~~~~~~~vKlRP~~~efL~~~sklfemhVyT 223 (635)
T KOG0323|consen 145 KKLHLVLDLDHTLLHTILKSDLSETEKYLKEEAESVESNKDLF-RFNPLGHDTEYLVKLRPFVHEFLKEANKLFEMHVYT 223 (635)
T ss_pred hcceeehhhhhHHHHhhccchhhhhhhhcccccccccccccce-eecccCCCceEEEEeCccHHHHHHHHHhhceeEEEe
Confidence 3469999999999998765421 011100 011114445699999999999999999999999999
Q ss_pred CCchHHHHHHHHHhCCCC-cccEE-EecCCccccCCceeccccccc---CCCC------------CCCCeeecCCCC
Q 044274 176 AGLKEYASLLLNRLDRNG-VISHR-LYRDSCKQIDGKFVKDLSEMG---RNLK------------QPENAIPVKPFT 235 (278)
Q Consensus 176 aa~~~YA~~vl~~LDp~~-~f~~~-l~R~~c~~~~g~~~KDL~~l~---rdl~------------qp~N~I~I~~F~ 235 (278)
.|.+.||..|+..|||.+ +|.+| ++|+.- ...-.+||..++ ..+. ++.|.|.|.+|.
T Consensus 224 mg~R~YA~~i~~liDP~~~lF~dRIisrde~---~~~kt~dL~~~~p~g~smvvIIDDr~dVW~~~~~nLI~i~~y~ 297 (635)
T KOG0323|consen 224 MGTRDYALEIAKLIDPEGKYFGDRIISRDES---PFFKTLDLVLLFPCGDSMVVIIDDRSDVWPDHKRNLIQIAPYP 297 (635)
T ss_pred ccchHHHHHHHHHhCCCCccccceEEEecCC---CcccccccccCCCCCCccEEEEeCccccccCCCcceEEeeeee
Confidence 999999999999999999 89887 567761 122244554442 2221 555999999986
No 10
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=98.03 E-value=1.7e-05 Score=74.44 Aligned_cols=75 Identities=17% Similarity=0.253 Sum_probs=62.4
Q ss_pred CCCeEEEEeCCCceeeccCCCCCCCCceEEeeccCCceeeEEEEeC-cCHHHHHHHHhhc-ceEEEEcCCchHHHHHHHH
Q 044274 110 PDKKTIFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKR-PGVDAFLDAISKK-YEVVVFTAGLKEYASLLLN 187 (278)
Q Consensus 110 ~~KktLVLDLDeTLIhs~~~~~~~~~Df~v~~~~~~~~~~~~v~~R-P~l~eFL~~l~~~-fEIvI~Taa~~~YA~~vl~ 187 (278)
+-.+.+|+||||||+-.... |..| |++.++|++|.+. +.++|||++.++++..+++
T Consensus 124 ~~~kvIvFDLDgTLi~~~~~----------------------v~irdPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~ 181 (301)
T TIGR01684 124 EPPHVVVFDLDSTLITDEEP----------------------VRIRDPRIYDSLTELKKRGCILVLWSYGDRDHVVESMR 181 (301)
T ss_pred ccceEEEEecCCCCcCCCCc----------------------cccCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHH
Confidence 35679999999999987432 2368 9999999999975 8999999999999999999
Q ss_pred HhCCCCcccEEEecCCccc
Q 044274 188 RLDRNGVISHRLYRDSCKQ 206 (278)
Q Consensus 188 ~LDp~~~f~~~l~R~~c~~ 206 (278)
.++-.++|...+..++...
T Consensus 182 ~lGLd~YFdvIIs~Gdv~~ 200 (301)
T TIGR01684 182 KVKLDRYFDIIISGGHKAE 200 (301)
T ss_pred HcCCCcccCEEEECCcccc
Confidence 9988888877776665543
No 11
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=97.95 E-value=2.8e-05 Score=73.14 Aligned_cols=74 Identities=24% Similarity=0.249 Sum_probs=62.2
Q ss_pred CCeEEEEeCCCceeeccCCCCCCCCceEEeeccCCceeeEEEEeC-cCHHHHHHHHhh-cceEEEEcCCchHHHHHHHHH
Q 044274 111 DKKTIFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKR-PGVDAFLDAISK-KYEVVVFTAGLKEYASLLLNR 188 (278)
Q Consensus 111 ~KktLVLDLDeTLIhs~~~~~~~~~Df~v~~~~~~~~~~~~v~~R-P~l~eFL~~l~~-~fEIvI~Taa~~~YA~~vl~~ 188 (278)
-++.+|+||||||+..... |..| |++.++|+.|.+ .+.++|||++..+++..+++.
T Consensus 127 ~~~~i~~D~D~TL~~~~~~----------------------v~irdp~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~ 184 (303)
T PHA03398 127 IPHVIVFDLDSTLITDEEP----------------------VRIRDPFVYDSLDELKERGCVLVLWSYGNREHVVHSLKE 184 (303)
T ss_pred eccEEEEecCCCccCCCCc----------------------cccCChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHH
Confidence 4689999999999988432 2368 999999999996 599999999999999999999
Q ss_pred hCCCCcccEEEecCCccc
Q 044274 189 LDRNGVISHRLYRDSCKQ 206 (278)
Q Consensus 189 LDp~~~f~~~l~R~~c~~ 206 (278)
+...++|......++...
T Consensus 185 lgL~~yFDvII~~g~i~~ 202 (303)
T PHA03398 185 TKLEGYFDIIICGGRKAG 202 (303)
T ss_pred cCCCccccEEEECCCccc
Confidence 988888877777666544
No 12
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=97.61 E-value=0.00015 Score=56.57 Aligned_cols=73 Identities=22% Similarity=0.284 Sum_probs=55.6
Q ss_pred EEEEeCCCceeeccCCCCCCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHhhc-ceEEEEcCCchHHHHHHHHHhCCC
Q 044274 114 TIFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAISKK-YEVVVFTAGLKEYASLLLNRLDRN 192 (278)
Q Consensus 114 tLVLDLDeTLIhs~~~~~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~~~-fEIvI~Taa~~~YA~~vl~~LDp~ 192 (278)
++|||+||||+........ ......+|++.++|+.+.+. +.++|.|++...++..+++.+.-.
T Consensus 1 ~~vfD~D~tl~~~~~~~~~----------------~~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~~~~ 64 (139)
T cd01427 1 AVLFDLDGTLLDSEPGIAE----------------IEELELYPGVKEALKELKEKGIKLALATNKSRREVLELLEELGLD 64 (139)
T ss_pred CeEEccCCceEccCccccc----------------cccCCcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHcCCc
Confidence 4899999999987543210 12235799999999999975 999999999999999999987654
Q ss_pred CcccEEEecC
Q 044274 193 GVISHRLYRD 202 (278)
Q Consensus 193 ~~f~~~l~R~ 202 (278)
..+...+..+
T Consensus 65 ~~~~~i~~~~ 74 (139)
T cd01427 65 DYFDPVITSN 74 (139)
T ss_pred hhhhheeccc
Confidence 4555555444
No 13
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=97.46 E-value=0.00048 Score=64.38 Aligned_cols=74 Identities=23% Similarity=0.312 Sum_probs=60.3
Q ss_pred CCeEEEEeCCCceeeccCCCCCCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHhhcc-eEEEEcCCchHHHHHHHHHh
Q 044274 111 DKKTIFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAISKKY-EVVVFTAGLKEYASLLLNRL 189 (278)
Q Consensus 111 ~KktLVLDLDeTLIhs~~~~~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~~~f-EIvI~Taa~~~YA~~vl~~L 189 (278)
.+-.+|+|||+|||-...... ..=|.+.+-|..+.+.+ -+++||.|.++++...++.+
T Consensus 121 ~phVIVfDlD~TLItd~~~v~---------------------Ir~~~v~~sL~~Lk~~g~vLvLWSyG~~eHV~~sl~~~ 179 (297)
T PF05152_consen 121 PPHVIVFDLDSTLITDEGDVR---------------------IRDPAVYDSLRELKEQGCVLVLWSYGNREHVRHSLKEL 179 (297)
T ss_pred CCcEEEEECCCcccccCCccc---------------------cCChHHHHHHHHHHHcCCEEEEecCCCHHHHHHHHHHh
Confidence 345999999999998754321 12478889999999765 77999999999999999999
Q ss_pred CCCCcccEEEecCCcc
Q 044274 190 DRNGVISHRLYRDSCK 205 (278)
Q Consensus 190 Dp~~~f~~~l~R~~c~ 205 (278)
.-.++|...+.+..-.
T Consensus 180 ~L~~~Fd~ii~~G~~~ 195 (297)
T PF05152_consen 180 KLEGYFDIIICGGNKA 195 (297)
T ss_pred CCccccEEEEeCCccC
Confidence 9889999998876544
No 14
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=97.34 E-value=0.00014 Score=70.73 Aligned_cols=90 Identities=31% Similarity=0.537 Sum_probs=69.8
Q ss_pred CCCCeEEEEeCCCceeeccCCCC-CCC--------CceEEeeccCCceeeEEEEeCcCHHHHHHHHhhcceEEEEcCCch
Q 044274 109 SPDKKTIFLDLDETLIHSKPDPP-PER--------FDFIVRPRIDGEVLNFYVLKRPGVDAFLDAISKKYEVVVFTAGLK 179 (278)
Q Consensus 109 ~~~KktLVLDLDeTLIhs~~~~~-~~~--------~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~~~fEIvI~Taa~~ 179 (278)
.+.+..||.|+|.|.+|+...+. +.. -++.....+.+....++++.||++..|+...++.||+.++|+|..
T Consensus 23 q~~~~~l~~~~~~~~~h~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~i~~~~e~~~~~~~~~ 102 (390)
T COG5190 23 QDKKLILVVDLDQTIIHTTVDPNDPNNVNQSLERTLKSVNDRDPVQEKCAYYVKARPKLFPFLTKISPLYELHIYTMGTR 102 (390)
T ss_pred cCcccccccccccceecccccCCCCCchhhhhhccccchhccccccccccceeeecccccchhhhhchhcceeeEeeccc
Confidence 34678899999999999987761 100 011111122344567999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCC-cccEE
Q 044274 180 EYASLLLNRLDRNG-VISHR 198 (278)
Q Consensus 180 ~YA~~vl~~LDp~~-~f~~~ 198 (278)
.|++.++.++||.| .|..+
T Consensus 103 ~~~~~~~~i~d~~g~~~~d~ 122 (390)
T COG5190 103 AYAERIAKIIDPTGKLFNDR 122 (390)
T ss_pred cchhhhhhcccccccccccc
Confidence 99999999999987 65554
No 15
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=97.34 E-value=0.0011 Score=57.68 Aligned_cols=91 Identities=15% Similarity=0.043 Sum_probs=61.4
Q ss_pred eEEEEeCCCceeeccCCCCCCCCceEEeeccC--CceeeEEEEeCcCHHHHHHHHh-hcceEEEEcCC-chHHHHHHHHH
Q 044274 113 KTIFLDLDETLIHSKPDPPPERFDFIVRPRID--GEVLNFYVLKRPGVDAFLDAIS-KKYEVVVFTAG-LKEYASLLLNR 188 (278)
Q Consensus 113 ktLVLDLDeTLIhs~~~~~~~~~Df~v~~~~~--~~~~~~~v~~RP~l~eFL~~l~-~~fEIvI~Taa-~~~YA~~vl~~ 188 (278)
+++|+|||+||............+-.+....+ +.....-+..+||+.++|+.|. +.+.+.|-|++ ...+++.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~~ 82 (174)
T TIGR01685 3 RVIVFDLDGTLWDHYMISLLGGPFKPVKQNNSIIIDKSGTEVTLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILGT 82 (174)
T ss_pred cEEEEeCCCCCcCcccccccCCCceeccCCCCeEEeCCCCEEEEcccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHh
Confidence 58999999999865543221111111110000 0112334678899999999998 56999999988 99999999999
Q ss_pred hCCC---------CcccEEEecCC
Q 044274 189 LDRN---------GVISHRLYRDS 203 (278)
Q Consensus 189 LDp~---------~~f~~~l~R~~ 203 (278)
++-. .+|..++..+.
T Consensus 83 ~~l~~~~~~~~~~~~Fd~iv~~~~ 106 (174)
T TIGR01685 83 FEITYAGKTVPMHSLFDDRIEIYK 106 (174)
T ss_pred CCcCCCCCcccHHHhceeeeeccC
Confidence 9865 56777666543
No 16
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=97.20 E-value=0.00044 Score=56.69 Aligned_cols=66 Identities=23% Similarity=0.207 Sum_probs=48.0
Q ss_pred eEEEEeCCCceeeccCCCCCCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHh-hcceEEEEcCC-chHHHHHHHHHhC
Q 044274 113 KTIFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAIS-KKYEVVVFTAG-LKEYASLLLNRLD 190 (278)
Q Consensus 113 ktLVLDLDeTLIhs~~~~~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~-~~fEIvI~Taa-~~~YA~~vl~~LD 190 (278)
+.||+||||||........ ..+-++ +.. ...||+.++|+.+. +.+.++|.|++ .+.++..+++...
T Consensus 1 kli~~DlD~Tl~~~~~~~~--~~~~~~----~~~------~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~ 68 (128)
T TIGR01681 1 KVIVFDLDNTLWTGENIVV--GEDPII----DLE------VTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFE 68 (128)
T ss_pred CEEEEeCCCCCCCCCcccc--cCCcch----hhH------HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhcc
Confidence 4789999999997732100 000000 000 36799999999997 47999999999 8999999998876
No 17
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=96.91 E-value=0.0022 Score=51.93 Aligned_cols=64 Identities=27% Similarity=0.240 Sum_probs=47.7
Q ss_pred eEEEEeCCCceeeccCCCCCCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHh-hcceEEEEcCCc--------hHHHH
Q 044274 113 KTIFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAIS-KKYEVVVFTAGL--------KEYAS 183 (278)
Q Consensus 113 ktLVLDLDeTLIhs~~~~~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~-~~fEIvI~Taa~--------~~YA~ 183 (278)
+.|+||+||||+....... .. ......|++.++|+.|. +.+.++|-|++. ..++.
T Consensus 1 k~~~~D~dgtL~~~~~~~~--~~--------------~~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~ 64 (132)
T TIGR01662 1 KGVVLDLDGTLTDDVPYVD--DE--------------DERILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVA 64 (132)
T ss_pred CEEEEeCCCceecCCCCCC--CH--------------HHheeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHH
Confidence 4799999999996411110 00 11246899999999998 459999999998 78888
Q ss_pred HHHHHhCCC
Q 044274 184 LLLNRLDRN 192 (278)
Q Consensus 184 ~vl~~LDp~ 192 (278)
.+++.+.-.
T Consensus 65 ~~l~~~~l~ 73 (132)
T TIGR01662 65 RRLEELGVP 73 (132)
T ss_pred HHHHHCCCC
Confidence 888887654
No 18
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=96.86 E-value=0.0037 Score=51.85 Aligned_cols=83 Identities=19% Similarity=0.269 Sum_probs=54.9
Q ss_pred eEEEEeCCCceeeccCCCCCCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHh-hcceEEEEcCCchHHHH--------
Q 044274 113 KTIFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAIS-KKYEVVVFTAGLKEYAS-------- 183 (278)
Q Consensus 113 ktLVLDLDeTLIhs~~~~~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~-~~fEIvI~Taa~~~YA~-------- 183 (278)
+.+++||||||+.....+ +. .....+.+.+.|+.+. +.++|++.|+=......
T Consensus 2 K~i~~DiDGTL~~~~~~~----y~--------------~~~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~ 63 (126)
T TIGR01689 2 KRLVMDLDNTITLTENGD----YA--------------NVAPILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINI 63 (126)
T ss_pred CEEEEeCCCCcccCCCCc----cc--------------ccccCHHHHHHHHHHHHCCCEEEEECCCCchhhhccccccch
Confidence 589999999997542111 10 0125778888898884 67999999987777665
Q ss_pred ----HHHHHhCCCC-cccEEEecC-CccccCCceecc
Q 044274 184 ----LLLNRLDRNG-VISHRLYRD-SCKQIDGKFVKD 214 (278)
Q Consensus 184 ----~vl~~LDp~~-~f~~~l~R~-~c~~~~g~~~KD 214 (278)
...+-|+.++ .+...+.+. .|. ..|.|+.|
T Consensus 64 ~~~~~t~~wL~k~~ipYd~l~~~kp~~~-~~~~~~dD 99 (126)
T TIGR01689 64 HTLPIIILWLNQHNVPYDEIYVGKPWCG-HDGFYVDD 99 (126)
T ss_pred hhHHHHHHHHHHcCCCCceEEeCCCcCC-CCCceecc
Confidence 6677777777 566665544 453 33455544
No 19
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=96.85 E-value=0.0014 Score=59.77 Aligned_cols=93 Identities=11% Similarity=0.135 Sum_probs=56.7
Q ss_pred CCeEEEEeCCCceeeccCC-----CCC--CCCceEEeeccCC---ceeeEEEEeCcCHHHHHHHHhh-cceEEEEcCC--
Q 044274 111 DKKTIFLDLDETLIHSKPD-----PPP--ERFDFIVRPRIDG---EVLNFYVLKRPGVDAFLDAISK-KYEVVVFTAG-- 177 (278)
Q Consensus 111 ~KktLVLDLDeTLIhs~~~-----~~~--~~~Df~v~~~~~~---~~~~~~v~~RP~l~eFL~~l~~-~fEIvI~Taa-- 177 (278)
++..++|||||||+.++.. +.. ...++.+...... +...-.....|++.+||+++.+ .+.++|-|+.
T Consensus 62 ~p~aViFDlDgTLlDSs~~~~~G~~~~s~~~~~~l~g~~~w~~~~~~~~~~s~p~~~a~elL~~l~~~G~~i~iVTnr~~ 141 (237)
T TIGR01672 62 PPIAVSFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIFFVTGRTP 141 (237)
T ss_pred CCeEEEEeCCCccccCcHHHhCCcccCCHHHhhhhcChHHHHHHHHhcccCCcchhHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 3459999999999998762 100 1111111110000 0001112233449999999985 6999999998
Q ss_pred --chHHHHHHHHHhCCCCcccEEEecCC
Q 044274 178 --LKEYASLLLNRLDRNGVISHRLYRDS 203 (278)
Q Consensus 178 --~~~YA~~vl~~LDp~~~f~~~l~R~~ 203 (278)
...+++.+++.+.-...|...+..+.
T Consensus 142 ~k~~~~a~~ll~~lGi~~~f~~i~~~d~ 169 (237)
T TIGR01672 142 GKTDTVSKTLAKNFHIPAMNPVIFAGDK 169 (237)
T ss_pred CcCHHHHHHHHHHhCCchheeEEECCCC
Confidence 66799999988876666655554443
No 20
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=96.69 E-value=0.0056 Score=50.96 Aligned_cols=53 Identities=28% Similarity=0.337 Sum_probs=39.3
Q ss_pred eEEEEeCCCceeeccCCCCCCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHh-hcceEEEEcCCch
Q 044274 113 KTIFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAIS-KKYEVVVFTAGLK 179 (278)
Q Consensus 113 ktLVLDLDeTLIhs~~~~~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~-~~fEIvI~Taa~~ 179 (278)
++|+||+||||+...........+ -+...||+.++|+.|. +.|.++|-|++..
T Consensus 1 ~~~~~d~dgtl~~~~~~~~~~~~~--------------~~~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~ 54 (147)
T TIGR01656 1 PALFLDRDGVINEDTVSDYPRSLD--------------DWQLRPGAVPALLTLRAAGYTVVVVTNQSG 54 (147)
T ss_pred CeEEEeCCCceeccCCcccCCCHH--------------HeEEcCChHHHHHHHHHCCCEEEEEeCCCc
Confidence 478999999999987533111110 1246899999999997 5799999999863
No 21
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=96.27 E-value=0.025 Score=48.48 Aligned_cols=52 Identities=25% Similarity=0.247 Sum_probs=37.9
Q ss_pred CeEEEEeCCCceeeccCCCCCCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHhh-cceEEEEcCCc
Q 044274 112 KKTIFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAISK-KYEVVVFTAGL 178 (278)
Q Consensus 112 KktLVLDLDeTLIhs~~~~~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~~-~fEIvI~Taa~ 178 (278)
.|.|+||+||||+...... .... . .+...||+.++|+.|.+ .|.++|-|++.
T Consensus 3 ~~~~~~d~~~t~~~~~~~~-~~~~-------------~-~~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~ 55 (181)
T PRK08942 3 MKAIFLDRDGVINVDSDGY-VKSP-------------D-EWIPIPGSIEAIARLKQAGYRVVVATNQS 55 (181)
T ss_pred ccEEEEECCCCcccCCccc-cCCH-------------H-HeEECCCHHHHHHHHHHCCCEEEEEeCCc
Confidence 4789999999997664211 1101 0 12467999999999996 59999999876
No 22
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=96.27 E-value=0.019 Score=49.32 Aligned_cols=67 Identities=27% Similarity=0.413 Sum_probs=46.3
Q ss_pred CCeEEEEeCCCceeeccCCCC-C-CCCceEEeeccCCceeeEEEEeCcCHHHHHHHHh-hcceEEEEcCCchH-------
Q 044274 111 DKKTIFLDLDETLIHSKPDPP-P-ERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAIS-KKYEVVVFTAGLKE------- 180 (278)
Q Consensus 111 ~KktLVLDLDeTLIhs~~~~~-~-~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~-~~fEIvI~Taa~~~------- 180 (278)
..+.++||+||||+-...... . ...++ ...-||+.+.|+.|. +.|.++|-|++...
T Consensus 12 ~~k~~~~D~Dgtl~~~~~~~~~~~~~~~~--------------~~~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~ 77 (166)
T TIGR01664 12 QSKVAAFDLDGTLITTRSGKVFPTSASDW--------------RFLYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSA 77 (166)
T ss_pred cCcEEEEeCCCceEecCCCCcccCChHHe--------------EEecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccH
Confidence 467899999999997643211 0 11111 113499999999997 67999999997653
Q ss_pred -----HHHHHHHHhCC
Q 044274 181 -----YASLLLNRLDR 191 (278)
Q Consensus 181 -----YA~~vl~~LDp 191 (278)
++..+++.++.
T Consensus 78 ~~~~~~i~~~l~~~gl 93 (166)
T TIGR01664 78 ESFKNKIEAFLEKLKV 93 (166)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 45666776664
No 23
>COG4996 Predicted phosphatase [General function prediction only]
Probab=96.24 E-value=0.022 Score=48.05 Aligned_cols=88 Identities=18% Similarity=0.119 Sum_probs=60.3
Q ss_pred EEEEeCCCceeec-cCCCCCCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHhh-cceEEEEcCCchHHHHHHHHHhCC
Q 044274 114 TIFLDLDETLIHS-KPDPPPERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAISK-KYEVVVFTAGLKEYASLLLNRLDR 191 (278)
Q Consensus 114 tLVLDLDeTLIhs-~~~~~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~~-~fEIvI~Taa~~~YA~~vl~~LDp 191 (278)
.+|||+|+||-.. ..+....++-.+-...+. ...+.-|.++|++.+||+++.. -|-+..+|=..+.-|-+++.++|-
T Consensus 2 ~i~~d~d~t~wdhh~iSsl~pPf~rVs~n~i~-Ds~G~ev~L~~~v~~~l~warnsG~i~~~~sWN~~~kA~~aLral~~ 80 (164)
T COG4996 2 AIVFDADKTLWDHHNISSLEPPFRRVSSNTIE-DSKGREVHLFPDVKETLKWARNSGYILGLASWNFEDKAIKALRALDL 80 (164)
T ss_pred cEEEeCCCcccccccchhcCCcceecCcccee-cCCCeEEEEcHHHHHHHHHHHhCCcEEEEeecCchHHHHHHHHHhch
Confidence 5899999999843 222211112111111111 1235668899999999999994 677788888889999999999998
Q ss_pred CCcccEEEecC
Q 044274 192 NGVISHRLYRD 202 (278)
Q Consensus 192 ~~~f~~~l~R~ 202 (278)
..+|.+..-..
T Consensus 81 ~~yFhy~VieP 91 (164)
T COG4996 81 LQYFHYIVIEP 91 (164)
T ss_pred hhhEEEEEecC
Confidence 88887665444
No 24
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=96.15 E-value=0.025 Score=51.61 Aligned_cols=92 Identities=11% Similarity=0.143 Sum_probs=54.2
Q ss_pred CCeEEEEeCCCceeeccCCCCC-------CCCceEEeeccC---CceeeEEEEeCcCHHHHHHHHh-hcceEEEEcC---
Q 044274 111 DKKTIFLDLDETLIHSKPDPPP-------ERFDFIVRPRID---GEVLNFYVLKRPGVDAFLDAIS-KKYEVVVFTA--- 176 (278)
Q Consensus 111 ~KktLVLDLDeTLIhs~~~~~~-------~~~Df~v~~~~~---~~~~~~~v~~RP~l~eFL~~l~-~~fEIvI~Ta--- 176 (278)
++..+++|+|||+++++..... ...+|.-....- .+....+...-||+.+||+.+. +.++|++-|+
T Consensus 62 ~p~av~~DIDeTvldnsp~~~~~~~~f~~~~~~y~~~~~fw~~y~~~~~~~a~p~~Ga~elL~~L~~~G~~I~iVTnR~~ 141 (237)
T PRK11009 62 PPMAVGFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQKFWEKMNNGWDEFSIPKEVARQLIDMHVKRGDSIYFITGRTA 141 (237)
T ss_pred CCcEEEEECcCccccCCchheeeeeccCCCcccccChHHHHHHHHhcccccCcchHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 3559999999999986532110 011110000000 0001223444555999999995 6799999998
Q ss_pred -CchHHHHHHHHHhCC--CCcccEEEecC
Q 044274 177 -GLKEYASLLLNRLDR--NGVISHRLYRD 202 (278)
Q Consensus 177 -a~~~YA~~vl~~LDp--~~~f~~~l~R~ 202 (278)
....+++.+++.+.- ..+|...+..+
T Consensus 142 ~k~~~t~~~Llk~~gip~~~~f~vil~gd 170 (237)
T PRK11009 142 TKTETVSKTLADDFHIPADNMNPVIFAGD 170 (237)
T ss_pred cccHHHHHHHHHHcCCCcccceeEEEcCC
Confidence 456688888887765 34555544444
No 25
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=96.07 E-value=0.025 Score=48.36 Aligned_cols=51 Identities=29% Similarity=0.226 Sum_probs=36.4
Q ss_pred eEEEEeCCCceeeccCCCCCCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHhh-cceEEEEcCCch
Q 044274 113 KTIFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAISK-KYEVVVFTAGLK 179 (278)
Q Consensus 113 ktLVLDLDeTLIhs~~~~~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~~-~fEIvI~Taa~~ 179 (278)
+.|+||+||||+-..... ....+ +..-||+.++|++|.+ .|.++|.|++..
T Consensus 2 ~~~~~D~Dgtl~~~~~~~-~~~~~---------------~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~ 53 (176)
T TIGR00213 2 KAIFLDRDGTINIDHGYV-HEIDN---------------FEFIDGVIDALRELKKMGYALVLVTNQSG 53 (176)
T ss_pred CEEEEeCCCCEeCCCCCC-CCHHH---------------eEECCCHHHHHHHHHHCCCEEEEEeCCcc
Confidence 678999999999421110 00011 2356999999999985 599999999874
No 26
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=96.06 E-value=0.011 Score=55.75 Aligned_cols=74 Identities=14% Similarity=0.115 Sum_probs=52.3
Q ss_pred CCeEEEEeCCCceeeccCCCCCCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHh-hcceEEEEcCCchHHHHHHHHH-
Q 044274 111 DKKTIFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAIS-KKYEVVVFTAGLKEYASLLLNR- 188 (278)
Q Consensus 111 ~KktLVLDLDeTLIhs~~~~~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~-~~fEIvI~Taa~~~YA~~vl~~- 188 (278)
.+|+||+|||+||..-...... . .|. -....-|++.++|+.+. +.+.+.|-|......|..+++.
T Consensus 2 ~~k~~v~DlDnTlw~gv~~e~g-~---------~~i---~~~~~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~~~ 68 (320)
T TIGR01686 2 ALKVLVLDLDNTLWGGVLGEDG-I---------DNL---NLSPLHKTLQEKIKTLKKQGFLLALASKNDEDDAKKVFERR 68 (320)
T ss_pred CeEEEEEcCCCCCCCCEEccCC-c---------ccc---ccCccHHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHhC
Confidence 5799999999999965432210 0 000 01113689999999998 5689999999999999999987
Q ss_pred ---hCCCCcccE
Q 044274 189 ---LDRNGVISH 197 (278)
Q Consensus 189 ---LDp~~~f~~ 197 (278)
+....+|..
T Consensus 69 ~~~~~~~~~f~~ 80 (320)
T TIGR01686 69 KDFILQAEDFDA 80 (320)
T ss_pred ccccCcHHHeeE
Confidence 544444443
No 27
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=95.83 E-value=0.047 Score=46.67 Aligned_cols=73 Identities=23% Similarity=0.205 Sum_probs=51.7
Q ss_pred eEEEEeCCCceeeccCCCCCCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHhh-cceEEEEcCC--------------
Q 044274 113 KTIFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAISK-KYEVVVFTAG-------------- 177 (278)
Q Consensus 113 ktLVLDLDeTLIhs~~~~~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~~-~fEIvI~Taa-------------- 177 (278)
+.++||.||||++........ + ..-.+..=||+.++|+.|.+ .|.++|.|+.
T Consensus 2 ~~~~~d~dg~l~~~~~~~~~~--~-----------~~~~~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~ 68 (161)
T TIGR01261 2 KILFIDRDGTLIEEPPSDFQV--D-----------ALEKLRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFD 68 (161)
T ss_pred CEEEEeCCCCccccCCCcccc--C-----------CHHHeeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHH
Confidence 678999999999954321100 0 01124568999999999996 6999999996
Q ss_pred -chHHHHHHHHHhCCCCcccEEEe
Q 044274 178 -LKEYASLLLNRLDRNGVISHRLY 200 (278)
Q Consensus 178 -~~~YA~~vl~~LDp~~~f~~~l~ 200 (278)
...++..+++.++-. |...++
T Consensus 69 ~~~~~~~~~l~~~gl~--fd~ii~ 90 (161)
T TIGR01261 69 GPHNLMLQIFRSQGII--FDDVLI 90 (161)
T ss_pred HHHHHHHHHHHHCCCc--eeEEEE
Confidence 356778888877765 665554
No 28
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=95.82 E-value=0.018 Score=53.56 Aligned_cols=88 Identities=23% Similarity=0.270 Sum_probs=55.2
Q ss_pred CCCeEEEEeCCCceeeccCCC-----CCCCC---ceEEeeccCCceeeEEEEeCcCHHHHHHHHh-hcceEEEEcCCchH
Q 044274 110 PDKKTIFLDLDETLIHSKPDP-----PPERF---DFIVRPRIDGEVLNFYVLKRPGVDAFLDAIS-KKYEVVVFTAGLKE 180 (278)
Q Consensus 110 ~~KktLVLDLDeTLIhs~~~~-----~~~~~---Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~-~~fEIvI~Taa~~~ 180 (278)
.+++.+|||||||++..+... ....+ ++. .....+ -...-||+.+||+++. +...++|.|+....
T Consensus 73 ~kp~AVV~DIDeTvLdns~y~~~~~~~~~~~~~~~w~-~wv~~~-----~a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~ 146 (266)
T TIGR01533 73 DKKYAIVLDLDETVLDNSPYQGYQVLNNKPFDPETWD-KWVQAA-----QAKPVAGALDFLNYANSKGVKIFYVSNRSEK 146 (266)
T ss_pred CCCCEEEEeCccccccChHHHHHHhcCCCcCCHHHHH-HHHHcC-----CCCcCccHHHHHHHHHHCCCeEEEEeCCCcc
Confidence 367899999999999776220 00111 110 000011 1235799999999997 45889999998877
Q ss_pred HHHHHHHHhCCCC----cccEEEecCC
Q 044274 181 YASLLLNRLDRNG----VISHRLYRDS 203 (278)
Q Consensus 181 YA~~vl~~LDp~~----~f~~~l~R~~ 203 (278)
+.+..+..|...| ...+.+.+++
T Consensus 147 ~~~~T~~~Lkk~Gi~~~~~d~lllr~~ 173 (266)
T TIGR01533 147 EKAATLKNLKRFGFPQADEEHLLLKKD 173 (266)
T ss_pred hHHHHHHHHHHcCcCCCCcceEEeCCC
Confidence 7776666665444 2456677753
No 29
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=95.68 E-value=0.046 Score=55.46 Aligned_cols=80 Identities=18% Similarity=0.217 Sum_probs=54.7
Q ss_pred CCCeEEEEeCCCceeeccCCCC-C-CCCceEEeeccCCceeeEEEEeCcCHHHHHHHHhh-cceEEEEcCCch-------
Q 044274 110 PDKKTIFLDLDETLIHSKPDPP-P-ERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAISK-KYEVVVFTAGLK------- 179 (278)
Q Consensus 110 ~~KktLVLDLDeTLIhs~~~~~-~-~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~~-~fEIvI~Taa~~------- 179 (278)
+..+.+.||+||||+....... + ...|+ ..+-|++.+.|+.|.+ .|.|+|+|+...
T Consensus 166 ~~~Kia~fD~DGTLi~t~sg~~~~~~~~d~--------------~~l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~ 231 (526)
T TIGR01663 166 GQEKIAGFDLDGTIIKTKSGKVFPKGPDDW--------------QIIFPEIPEKLKELEADGFKICIFTNQGGIARGKIN 231 (526)
T ss_pred ccCcEEEEECCCCccccCCCccCCCCHHHe--------------eecccCHHHHHHHHHHCCCEEEEEECCcccccCccc
Confidence 4678999999999997654211 1 11121 1246999999999985 699999999665
Q ss_pred -----HHHHHHHHHhCCCCcccEEEecCCcc
Q 044274 180 -----EYASLLLNRLDRNGVISHRLYRDSCK 205 (278)
Q Consensus 180 -----~YA~~vl~~LDp~~~f~~~l~R~~c~ 205 (278)
.++..+++.++-. |...+..+.|.
T Consensus 232 ~~~~~~ki~~iL~~lgip--fdviia~~~~~ 260 (526)
T TIGR01663 232 ADDFKAKIEAIVAKLGVP--FQVFIAIGAGF 260 (526)
T ss_pred HHHHHHHHHHHHHHcCCc--eEEEEeCCCCC
Confidence 4677788777643 55545444443
No 30
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=95.67 E-value=0.021 Score=48.77 Aligned_cols=51 Identities=35% Similarity=0.519 Sum_probs=35.2
Q ss_pred eEEEEeCCCceeeccCCCCC--CCCceEEeeccCCceeeEEEEeCcCHHHHHHHHhh-cceEEEEcCC
Q 044274 113 KTIFLDLDETLIHSKPDPPP--ERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAISK-KYEVVVFTAG 177 (278)
Q Consensus 113 ktLVLDLDeTLIhs~~~~~~--~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~~-~fEIvI~Taa 177 (278)
|.+.+|||||||........ ...|+ ..+-|++.+-|..+.+ .|.|||+|.-
T Consensus 1 Kia~fD~DgTLi~~~s~~~f~~~~~D~--------------~~~~~~v~~~L~~l~~~Gy~IvIvTNQ 54 (159)
T PF08645_consen 1 KIAFFDLDGTLIKTKSGKKFPKDPDDW--------------KFFPPGVPEALRELHKKGYKIVIVTNQ 54 (159)
T ss_dssp SEEEE-SCTTTEE-STSTTS-SSTCGG--------------EEC-TTHHHHHHHHHHTTEEEEEEEE-
T ss_pred CEEEEeCCCCccCCCCCCcCcCCHHHh--------------hhcchhHHHHHHHHHhcCCeEEEEeCc
Confidence 46789999999998764321 12333 2356789999999984 7999999974
No 31
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=95.67 E-value=0.058 Score=46.93 Aligned_cols=78 Identities=23% Similarity=0.223 Sum_probs=44.9
Q ss_pred CeEEEEeCCCceeeccCCCCCCCCceEEeeccCC----ceeeEEEEeCcCHHHHHHHHhh-cceEEEEc-CCchHHHHHH
Q 044274 112 KKTIFLDLDETLIHSKPDPPPERFDFIVRPRIDG----EVLNFYVLKRPGVDAFLDAISK-KYEVVVFT-AGLKEYASLL 185 (278)
Q Consensus 112 KktLVLDLDeTLIhs~~~~~~~~~Df~v~~~~~~----~~~~~~v~~RP~l~eFL~~l~~-~fEIvI~T-aa~~~YA~~v 185 (278)
.+++|+|||.||-........ ...|. ...++ ...+.-+.+-|++.+.|+.|.+ ...|.+=| +..++.|.++
T Consensus 3 PklvvFDLD~TlW~~~~~~~~-~~Pf~--~~~~~~~v~D~~g~~v~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~ 79 (169)
T PF12689_consen 3 PKLVVFDLDYTLWPPWMDTHV-GPPFK--KISNGNVVVDSRGEEVSLYPDVPEILQELKERGVKLAVASRTDEPDWAREL 79 (169)
T ss_dssp -SEEEE-STTTSSSS-TTTSS--S-EE--E-TTS--EEETT--EE---TTHHHHHHHHHHCT--EEEEE--S-HHHHHHH
T ss_pred CcEEEEcCcCCCCchhHhhcc-CCCce--ecCCCCEEEeCCCCEEEeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHH
Confidence 478999999999865443221 00111 00111 0134557788999999999994 78898888 4578999999
Q ss_pred HHHhCCC
Q 044274 186 LNRLDRN 192 (278)
Q Consensus 186 l~~LDp~ 192 (278)
|+.|+-.
T Consensus 80 L~~l~i~ 86 (169)
T PF12689_consen 80 LKLLEID 86 (169)
T ss_dssp HHHTT-C
T ss_pred HHhcCCC
Confidence 9999876
No 32
>PRK08238 hypothetical protein; Validated
Probab=95.62 E-value=0.05 Score=54.53 Aligned_cols=48 Identities=19% Similarity=0.103 Sum_probs=40.1
Q ss_pred EeCcCHHHHHHHHh-hcceEEEEcCCchHHHHHHHHHhCCCCcccEEEecCC
Q 044274 153 LKRPGVDAFLDAIS-KKYEVVVFTAGLKEYASLLLNRLDRNGVISHRLYRDS 203 (278)
Q Consensus 153 ~~RP~l~eFL~~l~-~~fEIvI~Taa~~~YA~~vl~~LDp~~~f~~~l~R~~ 203 (278)
..+|++.++|+.+. +.+.++|-|++.+.+++.+++.+.- |+..+..+.
T Consensus 72 p~~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~lGl---Fd~Vigsd~ 120 (479)
T PRK08238 72 PYNEEVLDYLRAERAAGRKLVLATASDERLAQAVAAHLGL---FDGVFASDG 120 (479)
T ss_pred CCChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCC---CCEEEeCCC
Confidence 36899999999997 5699999999999999999998853 666665553
No 33
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=95.48 E-value=0.0069 Score=56.10 Aligned_cols=51 Identities=14% Similarity=0.199 Sum_probs=42.7
Q ss_pred EEeCcCHHHHHHHHh-hcceEEEEcCCchHHHHHHHHHhCCCCcccEEEecC
Q 044274 152 VLKRPGVDAFLDAIS-KKYEVVVFTAGLKEYASLLLNRLDRNGVISHRLYRD 202 (278)
Q Consensus 152 v~~RP~l~eFL~~l~-~~fEIvI~Taa~~~YA~~vl~~LDp~~~f~~~l~R~ 202 (278)
+..-||+.++|+.|. +.+.+.|-|++...++..+++.++-..+|..+...+
T Consensus 141 ~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~gl~~~F~~vi~~~ 192 (273)
T PRK13225 141 LQLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQGLRSLFSVVQAGT 192 (273)
T ss_pred CCcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChhheEEEEecC
Confidence 345799999999998 568999999999999999999998777777665443
No 34
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=95.48 E-value=0.065 Score=45.11 Aligned_cols=69 Identities=20% Similarity=0.173 Sum_probs=47.7
Q ss_pred eEEEEeCCCceeeccCCCCCCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHhh-cceEEEEcCCchHHHHHHHHHhCC
Q 044274 113 KTIFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAISK-KYEVVVFTAGLKEYASLLLNRLDR 191 (278)
Q Consensus 113 ktLVLDLDeTLIhs~~~~~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~~-~fEIvI~Taa~~~YA~~vl~~LDp 191 (278)
+.++||+||||+..... ...+++.... ++.+|+. -+++|.+ .+.++|-|+.....+..+++.+.-
T Consensus 2 ~~~~~D~Dgtl~~~~~~-----------~~~~~~~~~~-~~~~~~~--~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~gi 67 (154)
T TIGR01670 2 RLLILDVDGVLTDGKIY-----------YTNNGEEIKA-FNVRDGY--GIRCALKSGIEVAIITGRKAKLVEDRCKTLGI 67 (154)
T ss_pred eEEEEeCceeEEcCeEE-----------ECCCCcEEEE-EechhHH--HHHHHHHCCCEEEEEECCCCHHHHHHHHHcCC
Confidence 57899999999953211 0112222223 3567776 6888874 699999999999999999988865
Q ss_pred CCcc
Q 044274 192 NGVI 195 (278)
Q Consensus 192 ~~~f 195 (278)
..+|
T Consensus 68 ~~~~ 71 (154)
T TIGR01670 68 THLY 71 (154)
T ss_pred CEEE
Confidence 5443
No 35
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=95.06 E-value=0.064 Score=45.89 Aligned_cols=59 Identities=15% Similarity=0.276 Sum_probs=46.7
Q ss_pred CCCeEEEEeCCCceeeccCCCCCCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHhhc-ceEEEEcCCc-hHHHHHHHH
Q 044274 110 PDKKTIFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAISKK-YEVVVFTAGL-KEYASLLLN 187 (278)
Q Consensus 110 ~~KktLVLDLDeTLIhs~~~~~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~~~-fEIvI~Taa~-~~YA~~vl~ 187 (278)
.+-+.||+|+||||...... ..-|++.++|+.|.+. +.++|.|++. ...+..+++
T Consensus 23 ~~v~~vv~D~Dgtl~~~~~~-----------------------~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~ 79 (170)
T TIGR01668 23 VGIKGVVLDKDNTLVYPDHN-----------------------EAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEK 79 (170)
T ss_pred CCCCEEEEecCCccccCCCC-----------------------CcChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHH
Confidence 46789999999999976332 1368999999999864 9999999998 677777777
Q ss_pred HhCC
Q 044274 188 RLDR 191 (278)
Q Consensus 188 ~LDp 191 (278)
.++.
T Consensus 80 ~~gl 83 (170)
T TIGR01668 80 ALGI 83 (170)
T ss_pred HcCC
Confidence 6653
No 36
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=94.79 E-value=0.062 Score=49.44 Aligned_cols=80 Identities=18% Similarity=0.196 Sum_probs=60.6
Q ss_pred CCeEEEEeCCCceeeccCCCCCCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHhh-cceEEEEcCCchHHHHHHHHHh
Q 044274 111 DKKTIFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAISK-KYEVVVFTAGLKEYASLLLNRL 189 (278)
Q Consensus 111 ~KktLVLDLDeTLIhs~~~~~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~~-~fEIvI~Taa~~~YA~~vl~~L 189 (278)
+++.+++|+||||.......+ +++.- ..-....|++.++|+.+.+ .+.++|.|+.....+..+++.|
T Consensus 157 ~~~~~~~D~dgtl~~~~~~~~---~~~~~---------~~~~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l~~l 224 (300)
T PHA02530 157 LPKAVIFDIDGTLAKMGGRSP---YDWTK---------VKEDKPNPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTVEWL 224 (300)
T ss_pred CCCEEEEECCCcCcCCCCCCc---cchhh---------cccCCCChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHHHHH
Confidence 568999999999998754321 22210 0112368999999999985 5999999999999999999999
Q ss_pred CCCC-cccEEEecC
Q 044274 190 DRNG-VISHRLYRD 202 (278)
Q Consensus 190 Dp~~-~f~~~l~R~ 202 (278)
...+ +|......+
T Consensus 225 ~~~~~~f~~i~~~~ 238 (300)
T PHA02530 225 RQTDIWFDDLIGRP 238 (300)
T ss_pred HHcCCchhhhhCCc
Confidence 8887 776665554
No 37
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=94.63 E-value=0.15 Score=49.28 Aligned_cols=54 Identities=31% Similarity=0.332 Sum_probs=40.4
Q ss_pred CCeEEEEeCCCceeeccCCCCCCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHhh-cceEEEEcCC
Q 044274 111 DKKTIFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAISK-KYEVVVFTAG 177 (278)
Q Consensus 111 ~KktLVLDLDeTLIhs~~~~~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~~-~fEIvI~Taa 177 (278)
+++.|+||-||||+........ + .....+...|++.++|+.|.+ .|.++|.|+.
T Consensus 1 ~~k~l~lDrDgtl~~~~~~~y~------~-------~~~~~~~l~pGV~e~L~~Lk~~G~kL~IvTNq 55 (354)
T PRK05446 1 MQKILFIDRDGTLIEEPPTDFQ------V-------DSLDKLAFEPGVIPALLKLQKAGYKLVMVTNQ 55 (354)
T ss_pred CCcEEEEeCCCCccCCCCcccc------c-------cCcccceECcCHHHHHHHHHhCCCeEEEEECC
Confidence 4789999999999997542211 0 011235689999999999985 6999999994
No 38
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=94.50 E-value=0.096 Score=47.86 Aligned_cols=57 Identities=23% Similarity=0.247 Sum_probs=45.1
Q ss_pred CeEEEEeCCCceeeccCCCCCCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHhh-cceEEEEcCCchHHHHHHHHHhC
Q 044274 112 KKTIFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAISK-KYEVVVFTAGLKEYASLLLNRLD 190 (278)
Q Consensus 112 KktLVLDLDeTLIhs~~~~~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~~-~fEIvI~Taa~~~YA~~vl~~LD 190 (278)
.+.|++||||||+..... ..|...+.|+.+.+ ...++|-|.-....+..+++.++
T Consensus 4 ~kli~~DlDGTLl~~~~~------------------------~~~~~~~ai~~l~~~Gi~~~iaTgR~~~~~~~~~~~l~ 59 (273)
T PRK00192 4 KLLVFTDLDGTLLDHHTY------------------------SYEPAKPALKALKEKGIPVIPCTSKTAAEVEVLRKELG 59 (273)
T ss_pred ceEEEEcCcccCcCCCCc------------------------CcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcC
Confidence 578999999999975321 24667889999986 48899988888888899999886
Q ss_pred CC
Q 044274 191 RN 192 (278)
Q Consensus 191 p~ 192 (278)
..
T Consensus 60 l~ 61 (273)
T PRK00192 60 LE 61 (273)
T ss_pred CC
Confidence 43
No 39
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=93.86 E-value=0.14 Score=45.96 Aligned_cols=67 Identities=21% Similarity=0.194 Sum_probs=50.6
Q ss_pred CCeEEEEeCCCceeeccCCCCCCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHhh-cceEEEEcCCchHHHH--HHHH
Q 044274 111 DKKTIFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAISK-KYEVVVFTAGLKEYAS--LLLN 187 (278)
Q Consensus 111 ~KktLVLDLDeTLIhs~~~~~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~~-~fEIvI~Taa~~~YA~--~vl~ 187 (278)
+-..+++|+||||.+... .-||+.++|+.|.+ .+.++|.|++.+..++ ..++
T Consensus 7 ~~~~~~~D~dG~l~~~~~-------------------------~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~ 61 (242)
T TIGR01459 7 DYDVFLLDLWGVIIDGNH-------------------------TYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLK 61 (242)
T ss_pred cCCEEEEecccccccCCc-------------------------cCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHH
Confidence 345889999999987532 36899999999984 6899999998877766 6677
Q ss_pred HhCCCC-cccEEEecC
Q 044274 188 RLDRNG-VISHRLYRD 202 (278)
Q Consensus 188 ~LDp~~-~f~~~l~R~ 202 (278)
.+.-.. .|..++..+
T Consensus 62 ~~gl~~~~~~~Ii~s~ 77 (242)
T TIGR01459 62 SLGINADLPEMIISSG 77 (242)
T ss_pred HCCCCccccceEEccH
Confidence 776554 566665544
No 40
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=93.85 E-value=0.15 Score=40.29 Aligned_cols=50 Identities=26% Similarity=0.343 Sum_probs=36.4
Q ss_pred EEEeCCCceeeccCCCCCCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHhh-cceEEEEcCCchHHHHHHHHHh
Q 044274 115 IFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAISK-KYEVVVFTAGLKEYASLLLNRL 189 (278)
Q Consensus 115 LVLDLDeTLIhs~~~~~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~~-~fEIvI~Taa~~~YA~~vl~~L 189 (278)
+++|+||||.+... .=||..+||+.+.+ ...+++.|.+...-.+.+++.|
T Consensus 1 ~l~D~dGvl~~g~~-------------------------~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L 51 (101)
T PF13344_consen 1 FLFDLDGVLYNGNE-------------------------PIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKL 51 (101)
T ss_dssp EEEESTTTSEETTE-------------------------E-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHH
T ss_pred CEEeCccEeEeCCC-------------------------cCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHH
Confidence 57999999998422 24899999999996 5999999998755444455554
No 41
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=93.75 E-value=0.15 Score=44.10 Aligned_cols=53 Identities=30% Similarity=0.330 Sum_probs=39.8
Q ss_pred EEEeCCCceeeccCCCCCCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHh-hcceEEEEcCCchHHHHHHHHHhCC
Q 044274 115 IFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAIS-KKYEVVVFTAGLKEYASLLLNRLDR 191 (278)
Q Consensus 115 LVLDLDeTLIhs~~~~~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~-~~fEIvI~Taa~~~YA~~vl~~LDp 191 (278)
|++||||||++.... .-|-..+.|+.+. +...++|-|.-....+..++..+.-
T Consensus 1 i~~DlDGTLl~~~~~------------------------i~~~~~~al~~l~~~g~~~~i~TGR~~~~~~~~~~~~~~ 54 (254)
T PF08282_consen 1 IFSDLDGTLLNSDGK------------------------ISPETIEALKELQEKGIKLVIATGRSYSSIKRLLKELGI 54 (254)
T ss_dssp EEEECCTTTCSTTSS------------------------SCHHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHHHTTH
T ss_pred cEEEECCceecCCCe------------------------eCHHHHHHHHhhcccceEEEEEccCcccccccccccccc
Confidence 689999999996433 2456677777777 6677778787788888888886653
No 42
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=93.70 E-value=0.17 Score=45.69 Aligned_cols=58 Identities=28% Similarity=0.305 Sum_probs=46.0
Q ss_pred CeEEEEeCCCceeeccCCCCCCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHh-hcceEEEEcCCchHHHHHHHHHhC
Q 044274 112 KKTIFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAIS-KKYEVVVFTAGLKEYASLLLNRLD 190 (278)
Q Consensus 112 KktLVLDLDeTLIhs~~~~~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~-~~fEIvI~Taa~~~YA~~vl~~LD 190 (278)
.+.|++||||||+..... ..|...+.|+.+. +...++|-|.-....+..+++.|.
T Consensus 3 ~kli~~DlDGTLl~~~~~------------------------i~~~~~~al~~~~~~g~~v~iaTGR~~~~~~~~~~~l~ 58 (264)
T COG0561 3 IKLLAFDLDGTLLDSNKT------------------------ISPETKEALARLREKGVKVVLATGRPLPDVLSILEELG 58 (264)
T ss_pred eeEEEEcCCCCccCCCCc------------------------cCHHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcC
Confidence 578999999999988653 3677788888774 678888888888888888888887
Q ss_pred CCC
Q 044274 191 RNG 193 (278)
Q Consensus 191 p~~ 193 (278)
..+
T Consensus 59 ~~~ 61 (264)
T COG0561 59 LDG 61 (264)
T ss_pred CCc
Confidence 654
No 43
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=93.51 E-value=0.2 Score=43.87 Aligned_cols=57 Identities=21% Similarity=0.214 Sum_probs=43.1
Q ss_pred eEEEEeCCCceeeccCCCCCCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHhhc-ceEEEEcCCchHHHHHHHHHhCC
Q 044274 113 KTIFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAISKK-YEVVVFTAGLKEYASLLLNRLDR 191 (278)
Q Consensus 113 ktLVLDLDeTLIhs~~~~~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~~~-fEIvI~Taa~~~YA~~vl~~LDp 191 (278)
+.+++||||||+..... .-|...+-|+.+.+. ..++|-|.-....+..+.+.|..
T Consensus 2 k~v~~DlDGTLl~~~~~------------------------i~~~~~~~i~~l~~~g~~~~~~TGR~~~~~~~~~~~l~~ 57 (215)
T TIGR01487 2 KLVAIDIDGTLTEPNRM------------------------ISERAIEAIRKAEKKGIPVSLVTGNTVPFARALAVLIGT 57 (215)
T ss_pred cEEEEecCCCcCCCCcc------------------------cCHHHHHHHHHHHHCCCEEEEEcCCcchhHHHHHHHhCC
Confidence 57899999999964221 356677778888754 78888888888888888888876
Q ss_pred CC
Q 044274 192 NG 193 (278)
Q Consensus 192 ~~ 193 (278)
..
T Consensus 58 ~~ 59 (215)
T TIGR01487 58 SG 59 (215)
T ss_pred CC
Confidence 53
No 44
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=92.87 E-value=0.24 Score=42.77 Aligned_cols=54 Identities=26% Similarity=0.334 Sum_probs=41.6
Q ss_pred EEEEeCCCceeeccCCCCCCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHhhc-ceEEEEcCCchHHHHHHHHHhC
Q 044274 114 TIFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAISKK-YEVVVFTAGLKEYASLLLNRLD 190 (278)
Q Consensus 114 tLVLDLDeTLIhs~~~~~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~~~-fEIvI~Taa~~~YA~~vl~~LD 190 (278)
.|++|+||||+..... ..-|.+.+.|+.+.+. ..++|-|.-...++..+++.++
T Consensus 1 li~~D~DgTL~~~~~~-----------------------~~~~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~~~~~ 55 (204)
T TIGR01484 1 LLFFDLDGTLLDPNAH-----------------------ELSPETIEALERLREAGVKVVLVTGRSLAEIKELLKQLP 55 (204)
T ss_pred CEEEeCcCCCcCCCCC-----------------------cCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHhCC
Confidence 3789999999974311 1357788889999865 7888888888889998888753
No 45
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=92.67 E-value=0.27 Score=43.03 Aligned_cols=55 Identities=24% Similarity=0.317 Sum_probs=42.2
Q ss_pred EEEEeCCCceeeccCCCCCCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHhh-cceEEEEcCCchHHHHHHHHHhCCC
Q 044274 114 TIFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAISK-KYEVVVFTAGLKEYASLLLNRLDRN 192 (278)
Q Consensus 114 tLVLDLDeTLIhs~~~~~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~~-~fEIvI~Taa~~~YA~~vl~~LDp~ 192 (278)
.+++||||||+...... .-+ ..+.|+.+.+ ...++|-|.-....+..+++.+...
T Consensus 1 ~i~~DlDGTLL~~~~~~-----------------------~~~-~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l~~~ 56 (221)
T TIGR02463 1 WVFSDLDGTLLDSHSYD-----------------------WQP-AAPWLTRLQEAGIPVILCTSKTAAEVEYLQKALGLT 56 (221)
T ss_pred CEEEeCCCCCcCCCCCC-----------------------cHH-HHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 37899999999764311 122 6788888885 5889999999999999999988643
No 46
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=92.63 E-value=0.34 Score=42.36 Aligned_cols=62 Identities=23% Similarity=0.287 Sum_probs=50.9
Q ss_pred CCCCeEEEEeCCCceeeccCCCCCCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHhhc-ceEEEEcCCchHHHHHHHH
Q 044274 109 SPDKKTIFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAISKK-YEVVVFTAGLKEYASLLLN 187 (278)
Q Consensus 109 ~~~KktLVLDLDeTLIhs~~~~~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~~~-fEIvI~Taa~~~YA~~vl~ 187 (278)
..+-+.+|+|||+|||--.... .=|-+.+.+..+.+. -.++|.|..++.-+..++.
T Consensus 25 ~~Gikgvi~DlDNTLv~wd~~~-----------------------~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~ 81 (175)
T COG2179 25 AHGIKGVILDLDNTLVPWDNPD-----------------------ATPELRAWLAELKEAGIKVVVVSNNKESRVARAAE 81 (175)
T ss_pred HcCCcEEEEeccCceecccCCC-----------------------CCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhh
Confidence 4589999999999999764322 257788888899865 8999999999999999999
Q ss_pred HhCCCC
Q 044274 188 RLDRNG 193 (278)
Q Consensus 188 ~LDp~~ 193 (278)
.||-+.
T Consensus 82 ~l~v~f 87 (175)
T COG2179 82 KLGVPF 87 (175)
T ss_pred hcCCce
Confidence 988653
No 47
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=92.58 E-value=0.49 Score=41.70 Aligned_cols=77 Identities=31% Similarity=0.330 Sum_probs=53.0
Q ss_pred CCeEEEEeCCCceeeccCCCCCCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHh-hcceEEEEcCCc-----------
Q 044274 111 DKKTIFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAIS-KKYEVVVFTAGL----------- 178 (278)
Q Consensus 111 ~KktLVLDLDeTLIhs~~~~~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~-~~fEIvI~Taa~----------- 178 (278)
..+.|+||.||||+--......+..+ ..+-|++.+-|..+. ..|-+||+|.-+
T Consensus 4 ~~k~lflDRDGtin~d~~~yv~~~~~---------------~~~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~ 68 (181)
T COG0241 4 DQKALFLDRDGTINIDKGDYVDSLDD---------------FQFIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEAD 68 (181)
T ss_pred CCcEEEEcCCCceecCCCcccCcHHH---------------hccCccHHHHHHHHHhCCCeEEEEECCCCccccCccHHH
Confidence 36899999999999653321111111 236899999999997 579999999833
Q ss_pred -hHHHHHHHHHhCCCC-cccEEEecC
Q 044274 179 -KEYASLLLNRLDRNG-VISHRLYRD 202 (278)
Q Consensus 179 -~~YA~~vl~~LDp~~-~f~~~l~R~ 202 (278)
..+-+.+++.|..++ .|+.+++..
T Consensus 69 f~~~~~~m~~~l~~~gv~id~i~~Cp 94 (181)
T COG0241 69 FDKLHNKMLKILASQGVKIDGILYCP 94 (181)
T ss_pred HHHHHHHHHHHHHHcCCccceEEECC
Confidence 233445667776667 788888743
No 48
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=92.33 E-value=0.32 Score=43.57 Aligned_cols=53 Identities=19% Similarity=0.272 Sum_probs=39.9
Q ss_pred EEEEeCCCceeeccCCCCCCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHhh-cceEEEEcCCchHHHHHHHHHhCC
Q 044274 114 TIFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAISK-KYEVVVFTAGLKEYASLLLNRLDR 191 (278)
Q Consensus 114 tLVLDLDeTLIhs~~~~~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~~-~fEIvI~Taa~~~YA~~vl~~LDp 191 (278)
.+++||||||++... .-|...++|+.+.+ ...+++-|.-....+..+++.+..
T Consensus 1 li~~DlDGTLl~~~~-------------------------~~~~~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~~~lg~ 54 (225)
T TIGR02461 1 VIFTDLDGTLLPPGY-------------------------EPGPAREALEELKDLGFPIVFVSSKTRAEQEYYREELGV 54 (225)
T ss_pred CEEEeCCCCCcCCCC-------------------------CchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCC
Confidence 378899999998421 12457889999986 488888887777777888887764
No 49
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=92.32 E-value=0.32 Score=45.32 Aligned_cols=63 Identities=21% Similarity=0.361 Sum_probs=48.8
Q ss_pred CCCCCCCeEEEEeCCCceeeccCCCCCCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHhhcce--EEEEcCCchHHHH
Q 044274 106 PLISPDKKTIFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAISKKYE--VVVFTAGLKEYAS 183 (278)
Q Consensus 106 p~~~~~KktLVLDLDeTLIhs~~~~~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~~~fE--IvI~Taa~~~YA~ 183 (278)
+....++.+++||.||||......+... ..=+.+.+.|..|...+. |+|.|--+..-.+
T Consensus 12 ~~~~a~~~~~~lDyDGTl~~i~~~p~~a-------------------~~~~~l~~lL~~Las~~~~~v~iiSGR~~~~l~ 72 (266)
T COG1877 12 PYLNARKRLLFLDYDGTLTEIVPHPEAA-------------------VPDDRLLSLLQDLASDPRNVVAIISGRSLAELE 72 (266)
T ss_pred ccccccceEEEEeccccccccccCcccc-------------------CCCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHH
Confidence 3344589999999999999987765421 234678999999999999 7777777788877
Q ss_pred HHHH
Q 044274 184 LLLN 187 (278)
Q Consensus 184 ~vl~ 187 (278)
..+.
T Consensus 73 ~~~~ 76 (266)
T COG1877 73 RLFG 76 (266)
T ss_pred HhcC
Confidence 7777
No 50
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=92.30 E-value=0.37 Score=43.47 Aligned_cols=56 Identities=27% Similarity=0.253 Sum_probs=39.0
Q ss_pred CeEEEEeCCCceeeccCCCCCCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHhhc-ceEEEEcCCchHHHHHHHHHhC
Q 044274 112 KKTIFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAISKK-YEVVVFTAGLKEYASLLLNRLD 190 (278)
Q Consensus 112 KktLVLDLDeTLIhs~~~~~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~~~-fEIvI~Taa~~~YA~~vl~~LD 190 (278)
.+.+++||||||+..... .-|-..+.|+.+.+. ..++|=|.-....+..+++.+.
T Consensus 3 ~kli~~DlDGTLl~~~~~------------------------i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~ 58 (270)
T PRK10513 3 IKLIAIDMDGTLLLPDHT------------------------ISPAVKQAIAAARAKGVNVVLTTGRPYAGVHRYLKELH 58 (270)
T ss_pred eEEEEEecCCcCcCCCCc------------------------cCHHHHHHHHHHHHCCCEEEEecCCChHHHHHHHHHhC
Confidence 478999999999976321 234456777787755 6666666666666777777775
Q ss_pred C
Q 044274 191 R 191 (278)
Q Consensus 191 p 191 (278)
.
T Consensus 59 ~ 59 (270)
T PRK10513 59 M 59 (270)
T ss_pred C
Confidence 4
No 51
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=91.78 E-value=0.88 Score=39.31 Aligned_cols=71 Identities=15% Similarity=0.177 Sum_probs=43.6
Q ss_pred CCeEEEEeCCCceeeccCCCCCCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHh-hcceEEEEcCCchHHHHHHHHHh
Q 044274 111 DKKTIFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAIS-KKYEVVVFTAGLKEYASLLLNRL 189 (278)
Q Consensus 111 ~KktLVLDLDeTLIhs~~~~~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~-~~fEIvI~Taa~~~YA~~vl~~L 189 (278)
+.+.||+|+||||+.....-.. ++.....+.. |.+ .=++.+. +.++++|-|......+..+++.+
T Consensus 20 ~ikli~~D~Dgtl~~~~i~~~~-----------~~~~~~~~~~-~d~--~~i~~L~~~Gi~v~I~T~~~~~~v~~~l~~l 85 (183)
T PRK09484 20 NIRLLICDVDGVFSDGLIYMGN-----------NGEELKAFNV-RDG--YGIRCLLTSGIEVAIITGRKSKLVEDRMTTL 85 (183)
T ss_pred CceEEEEcCCeeeecCEEEEcC-----------CCCEEEEEec-cch--HHHHHHHHCCCEEEEEeCCCcHHHHHHHHHc
Confidence 5789999999999975321000 1111122211 221 1233333 67999999999999999999988
Q ss_pred CCCCcc
Q 044274 190 DRNGVI 195 (278)
Q Consensus 190 Dp~~~f 195 (278)
.-..+|
T Consensus 86 gl~~~f 91 (183)
T PRK09484 86 GITHLY 91 (183)
T ss_pred CCceee
Confidence 654433
No 52
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=91.75 E-value=0.51 Score=41.33 Aligned_cols=58 Identities=17% Similarity=0.182 Sum_probs=38.6
Q ss_pred CeEEEEeCCCceeeccCCCCCCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHhhc-ceEEEEcCCchHHHHHHHHHhC
Q 044274 112 KKTIFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAISKK-YEVVVFTAGLKEYASLLLNRLD 190 (278)
Q Consensus 112 KktLVLDLDeTLIhs~~~~~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~~~-fEIvI~Taa~~~YA~~vl~~LD 190 (278)
.+.|++||||||+..... .-|...+-|..+.+. ..++|=|.-....+..+++.+.
T Consensus 3 ~kli~~DlDGTLl~~~~~------------------------i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l~ 58 (230)
T PRK01158 3 IKAIAIDIDGTITDKDRR------------------------LSLKAVEAIRKAEKLGIPVILATGNVLCFARAAAKLIG 58 (230)
T ss_pred eeEEEEecCCCcCCCCCc------------------------cCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhC
Confidence 368999999999965321 345566677777754 5666666666666677777775
Q ss_pred CCC
Q 044274 191 RNG 193 (278)
Q Consensus 191 p~~ 193 (278)
...
T Consensus 59 ~~~ 61 (230)
T PRK01158 59 TSG 61 (230)
T ss_pred CCC
Confidence 443
No 53
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=91.54 E-value=0.49 Score=43.13 Aligned_cols=57 Identities=23% Similarity=0.265 Sum_probs=40.6
Q ss_pred CCeEEEEeCCCceeeccCCCCCCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHhh-cceEEEEcCCchHHHHHHHHHh
Q 044274 111 DKKTIFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAISK-KYEVVVFTAGLKEYASLLLNRL 189 (278)
Q Consensus 111 ~KktLVLDLDeTLIhs~~~~~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~~-~fEIvI~Taa~~~YA~~vl~~L 189 (278)
.++.+++||||||++.... .-|-..+-|+.+.+ -..++|-|.-....+..+++.+
T Consensus 6 ~~~lI~~DlDGTLL~~~~~------------------------i~~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~~~~l 61 (271)
T PRK03669 6 DPLLIFTDLDGTLLDSHTY------------------------DWQPAAPWLTRLREAQVPVILCSSKTAAEMLPLQQTL 61 (271)
T ss_pred CCeEEEEeCccCCcCCCCc------------------------CcHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHh
Confidence 5789999999999975321 12334566777774 4777777777777778888887
Q ss_pred CC
Q 044274 190 DR 191 (278)
Q Consensus 190 Dp 191 (278)
..
T Consensus 62 ~~ 63 (271)
T PRK03669 62 GL 63 (271)
T ss_pred CC
Confidence 64
No 54
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=91.53 E-value=0.59 Score=41.97 Aligned_cols=17 Identities=47% Similarity=0.606 Sum_probs=14.1
Q ss_pred CeEEEEeCCCceeeccC
Q 044274 112 KKTIFLDLDETLIHSKP 128 (278)
Q Consensus 112 KktLVLDLDeTLIhs~~ 128 (278)
.+++++||||||+....
T Consensus 3 ~kli~~DlDGTLl~~~~ 19 (272)
T PRK10530 3 YRVIALDLDGTLLTPKK 19 (272)
T ss_pred ccEEEEeCCCceECCCC
Confidence 47899999999997643
No 55
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=91.49 E-value=0.44 Score=42.76 Aligned_cols=55 Identities=25% Similarity=0.350 Sum_probs=36.4
Q ss_pred EEEEeCCCceeeccCCCCCCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHhh-cceEEEEcCCchHHHHHHHHHhCCC
Q 044274 114 TIFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAISK-KYEVVVFTAGLKEYASLLLNRLDRN 192 (278)
Q Consensus 114 tLVLDLDeTLIhs~~~~~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~~-~fEIvI~Taa~~~YA~~vl~~LDp~ 192 (278)
.+++||||||+..... .-|...+.|+.+.+ ...++|-|.-....+..+++.+...
T Consensus 1 li~~DlDGTLl~~~~~------------------------i~~~~~~~i~~l~~~G~~~~iaTGR~~~~~~~~~~~~~~~ 56 (256)
T TIGR00099 1 LIFIDLDGTLLNDDHT------------------------ISPSTKEALAKLREKGIKVVLATGRPYKEVKNILKELGLD 56 (256)
T ss_pred CEEEeCCCCCCCCCCc------------------------cCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCC
Confidence 3789999999976321 23445566666664 4677777777766666677666543
No 56
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=91.10 E-value=0.61 Score=37.88 Aligned_cols=57 Identities=21% Similarity=0.334 Sum_probs=49.7
Q ss_pred EEEEeCcCHHHHHHHHh-hcceEEEEcCCchHHHHHHHHHhCCCCcccEEEecCCccc
Q 044274 150 FYVLKRPGVDAFLDAIS-KKYEVVVFTAGLKEYASLLLNRLDRNGVISHRLYRDSCKQ 206 (278)
Q Consensus 150 ~~v~~RP~l~eFL~~l~-~~fEIvI~Taa~~~YA~~vl~~LDp~~~f~~~l~R~~c~~ 206 (278)
......|++.++|+.+. +.+.++|.|.+...++..+++.+....+|...++.+++..
T Consensus 74 ~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~~~f~~i~~~~~~~~ 131 (176)
T PF13419_consen 74 SKLQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLERLGLDDYFDEIISSDDVGS 131 (176)
T ss_dssp GGEEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHGGGCSEEEEGGGSSS
T ss_pred hccchhhhhhhhhhhcccccceeEEeecCCcccccccccccccccccccccccchhhh
Confidence 34788999999999999 8999999999999999999999977678888887765543
No 57
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=91.01 E-value=0.59 Score=42.40 Aligned_cols=15 Identities=27% Similarity=0.459 Sum_probs=13.1
Q ss_pred eEEEEeCCCceeecc
Q 044274 113 KTIFLDLDETLIHSK 127 (278)
Q Consensus 113 ktLVLDLDeTLIhs~ 127 (278)
+.+++||||||+...
T Consensus 3 kli~~DlDGTLl~~~ 17 (272)
T PRK15126 3 RLAAFDMDGTLLMPD 17 (272)
T ss_pred cEEEEeCCCcCcCCC
Confidence 689999999999754
No 58
>PRK10444 UMP phosphatase; Provisional
Probab=90.82 E-value=0.45 Score=43.41 Aligned_cols=53 Identities=28% Similarity=0.425 Sum_probs=37.9
Q ss_pred eEEEEeCCCceeeccCCCCCCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHhh-cceEEEEcCCchHHHHHHHHHhC
Q 044274 113 KTIFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAISK-KYEVVVFTAGLKEYASLLLNRLD 190 (278)
Q Consensus 113 ktLVLDLDeTLIhs~~~~~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~~-~fEIvI~Taa~~~YA~~vl~~LD 190 (278)
+++++|+||||+.... .=|+..+|++.+.+ ...+++-|.....-...+++.|.
T Consensus 2 ~~v~~DlDGtL~~~~~-------------------------~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~ 55 (248)
T PRK10444 2 KNVICDIDGVLMHDNV-------------------------AVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFA 55 (248)
T ss_pred cEEEEeCCCceEeCCe-------------------------eCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHH
Confidence 4789999999998741 24778888888874 57777777776655555555553
No 59
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=90.58 E-value=0.57 Score=42.20 Aligned_cols=54 Identities=22% Similarity=0.215 Sum_probs=40.1
Q ss_pred EEEEeCCCceeeccCCCCCCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHhhc-ceEEEEcCCchHHHHHHHHHhCC
Q 044274 114 TIFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAISKK-YEVVVFTAGLKEYASLLLNRLDR 191 (278)
Q Consensus 114 tLVLDLDeTLIhs~~~~~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~~~-fEIvI~Taa~~~YA~~vl~~LDp 191 (278)
.+++||||||++..... -+...++++.+.+. ..+++-|.-....+..+++.+..
T Consensus 1 li~~DlDGTll~~~~~~------------------------~~~~~~~i~~l~~~g~~~~~~TgR~~~~~~~~~~~~~~ 55 (256)
T TIGR01486 1 WIFTDLDGTLLDPHGYD------------------------WGPAKEVLERLQELGIPVIPCTSKTAAEVEYLRKELGL 55 (256)
T ss_pred CEEEcCCCCCcCCCCcC------------------------chHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCC
Confidence 37899999999764311 23467899998865 77777777777788888888753
No 60
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=90.39 E-value=0.74 Score=42.31 Aligned_cols=19 Identities=42% Similarity=0.602 Sum_probs=15.4
Q ss_pred CCeEEEEeCCCceeeccCC
Q 044274 111 DKKTIFLDLDETLIHSKPD 129 (278)
Q Consensus 111 ~KktLVLDLDeTLIhs~~~ 129 (278)
.+..|++|+||||+.....
T Consensus 13 ~~~li~~D~DGTLl~~~~~ 31 (266)
T PRK10187 13 ANYAWFFDLDGTLAEIKPH 31 (266)
T ss_pred CCEEEEEecCCCCCCCCCC
Confidence 4689999999999986543
No 61
>PLN02645 phosphoglycolate phosphatase
Probab=90.30 E-value=0.52 Score=44.22 Aligned_cols=54 Identities=17% Similarity=0.188 Sum_probs=38.7
Q ss_pred CCeEEEEeCCCceeeccCCCCCCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHh-hcceEEEEcCCchHHHHHHHHHh
Q 044274 111 DKKTIFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAIS-KKYEVVVFTAGLKEYASLLLNRL 189 (278)
Q Consensus 111 ~KktLVLDLDeTLIhs~~~~~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~-~~fEIvI~Taa~~~YA~~vl~~L 189 (278)
.-+++++|+||||.+... + . |+..++|+.+. +...+++-|+....-...+++.|
T Consensus 27 ~~~~~~~D~DGtl~~~~~-~-----------------------~-~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l 81 (311)
T PLN02645 27 SVETFIFDCDGVIWKGDK-L-----------------------I-EGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKF 81 (311)
T ss_pred hCCEEEEeCcCCeEeCCc-c-----------------------C-cCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHH
Confidence 456899999999987632 1 2 78889999987 56888888887644444444444
No 62
>PRK10976 putative hydrolase; Provisional
Probab=90.04 E-value=0.81 Score=41.19 Aligned_cols=15 Identities=33% Similarity=0.507 Sum_probs=13.2
Q ss_pred eEEEEeCCCceeecc
Q 044274 113 KTIFLDLDETLIHSK 127 (278)
Q Consensus 113 ktLVLDLDeTLIhs~ 127 (278)
+.+++||||||+...
T Consensus 3 kli~~DlDGTLl~~~ 17 (266)
T PRK10976 3 QVVASDLDGTLLSPD 17 (266)
T ss_pred eEEEEeCCCCCcCCC
Confidence 689999999999764
No 63
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=89.85 E-value=0.67 Score=39.38 Aligned_cols=62 Identities=23% Similarity=0.322 Sum_probs=37.8
Q ss_pred EEEeCCCceeeccCCCCCCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHhhc-ceEEEEcCCchHHHH---HHHHHh
Q 044274 115 IFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAISKK-YEVVVFTAGLKEYAS---LLLNRL 189 (278)
Q Consensus 115 LVLDLDeTLIhs~~~~~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~~~-fEIvI~Taa~~~YA~---~vl~~L 189 (278)
+++|+||||+.+...-.. .+ ..+.. +..|++.++++.+.+. +.+++-|+-....+. ..++.+
T Consensus 2 VisDIDGTL~~sd~~~~~--~~-----~~~~~------~~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~~~ 67 (157)
T smart00775 2 VISDIDGTITKSDVLGHV--VP-----IIGKD------WTHPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLSQI 67 (157)
T ss_pred EEEecCCCCccccccccc--cc-----ccccC------cCCHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHHHh
Confidence 789999999987532110 00 01111 3479999999999964 665555555544443 555554
No 64
>PTZ00174 phosphomannomutase; Provisional
Probab=89.63 E-value=0.67 Score=41.83 Aligned_cols=42 Identities=19% Similarity=0.344 Sum_probs=27.8
Q ss_pred CCeEEEEeCCCceeeccCCCCCCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHhhc-ceEEEEcC
Q 044274 111 DKKTIFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAISKK-YEVVVFTA 176 (278)
Q Consensus 111 ~KktLVLDLDeTLIhs~~~~~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~~~-fEIvI~Ta 176 (278)
..+.+++||||||+++... .-|...+-|+.+.+. ..++|=|.
T Consensus 4 ~~klia~DlDGTLL~~~~~------------------------is~~~~~ai~~l~~~Gi~~viaTG 46 (247)
T PTZ00174 4 KKTILLFDVDGTLTKPRNP------------------------ITQEMKDTLAKLKSKGFKIGVVGG 46 (247)
T ss_pred CCeEEEEECcCCCcCCCCC------------------------CCHHHHHHHHHHHHCCCEEEEEcC
Confidence 4678999999999987532 234456667777755 44444444
No 65
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=89.54 E-value=0.82 Score=39.77 Aligned_cols=61 Identities=25% Similarity=0.365 Sum_probs=45.2
Q ss_pred CCCCCCeEEEEeCCCceeeccCCCCCCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHhhcc-e--EEEEcCCc-----
Q 044274 107 LISPDKKTIFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAISKKY-E--VVVFTAGL----- 178 (278)
Q Consensus 107 ~~~~~KktLVLDLDeTLIhs~~~~~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~~~f-E--IvI~Taa~----- 178 (278)
+...+=+.||+|+|+||+.-.... .-|-+.+.++.+.+.| + |+|.|.+.
T Consensus 36 Lk~~Gik~li~DkDNTL~~~~~~~-----------------------i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d 92 (168)
T PF09419_consen 36 LKKKGIKALIFDKDNTLTPPYEDE-----------------------IPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDD 92 (168)
T ss_pred hhhcCceEEEEcCCCCCCCCCcCc-----------------------CCHHHHHHHHHHHHHCCCCeEEEEECCCCcccC
Confidence 345688999999999998654432 3577888899998765 3 89999873
Q ss_pred --hHHHHHHHHHhC
Q 044274 179 --KEYASLLLNRLD 190 (278)
Q Consensus 179 --~~YA~~vl~~LD 190 (278)
..-|+.+-+.|.
T Consensus 93 ~~~~~a~~~~~~lg 106 (168)
T PF09419_consen 93 PDGERAEALEKALG 106 (168)
T ss_pred ccHHHHHHHHHhhC
Confidence 566677666665
No 66
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=89.39 E-value=0.76 Score=43.36 Aligned_cols=52 Identities=21% Similarity=0.273 Sum_probs=38.6
Q ss_pred eEEEEeCCCceeeccCCCCCCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHhh-----cceEEEEcCCc----hHHHH
Q 044274 113 KTIFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAISK-----KYEVVVFTAGL----KEYAS 183 (278)
Q Consensus 113 ktLVLDLDeTLIhs~~~~~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~~-----~fEIvI~Taa~----~~YA~ 183 (278)
+.+++|+||||++... .=|+..++++.+.. ...+++.|... +.+++
T Consensus 1 ~~~ifD~DGvL~~g~~-------------------------~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~ 55 (321)
T TIGR01456 1 FGFAFDIDGVLFRGKK-------------------------PIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAE 55 (321)
T ss_pred CEEEEeCcCceECCcc-------------------------ccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHH
Confidence 3689999999998733 25788999999986 68888888654 55666
Q ss_pred HHHHHh
Q 044274 184 LLLNRL 189 (278)
Q Consensus 184 ~vl~~L 189 (278)
.+.+.+
T Consensus 56 ~l~~~l 61 (321)
T TIGR01456 56 EISSLL 61 (321)
T ss_pred HHHHHc
Confidence 664544
No 67
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=89.31 E-value=0.67 Score=40.26 Aligned_cols=54 Identities=20% Similarity=0.229 Sum_probs=46.8
Q ss_pred EEeCcCHHHHHHHHhhc-ceEEEEcCCchHHHHHHHHHhCCCCcccEEEecCCcc
Q 044274 152 VLKRPGVDAFLDAISKK-YEVVVFTAGLKEYASLLLNRLDRNGVISHRLYRDSCK 205 (278)
Q Consensus 152 v~~RP~l~eFL~~l~~~-fEIvI~Taa~~~YA~~vl~~LDp~~~f~~~l~R~~c~ 205 (278)
+...||+.+||+.|.+. +.++|.|++...++...++.++-..+|..++..++..
T Consensus 93 ~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~ 147 (221)
T TIGR02253 93 LRVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERLGVRDFFDAVITSEEEG 147 (221)
T ss_pred CCCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhCChHHhccEEEEeccCC
Confidence 56899999999999865 9999999999999999999988777888887766554
No 68
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=89.24 E-value=0.78 Score=41.85 Aligned_cols=45 Identities=20% Similarity=0.282 Sum_probs=32.0
Q ss_pred eEEEEeCCCceeeccCCCCCCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHhh-cceEEEEcCCc
Q 044274 113 KTIFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAISK-KYEVVVFTAGL 178 (278)
Q Consensus 113 ktLVLDLDeTLIhs~~~~~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~~-~fEIvI~Taa~ 178 (278)
+++++|+||||.+...... ..=|+..++|+.+.+ -..+++-|...
T Consensus 2 k~i~~D~DGtl~~~~~~~~---------------------~~~~~a~~al~~l~~~G~~~~~~Tn~~ 47 (257)
T TIGR01458 2 KGVLLDISGVLYISDAKSG---------------------VAVPGSQEAVKRLRGASVKVRFVTNTT 47 (257)
T ss_pred CEEEEeCCCeEEeCCCccc---------------------CcCCCHHHHHHHHHHCCCeEEEEECCC
Confidence 4789999999998744100 024788888888885 47788888643
No 69
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=88.84 E-value=1.6 Score=39.87 Aligned_cols=88 Identities=18% Similarity=0.195 Sum_probs=53.2
Q ss_pred CCCeEEEEeCCCceeeccCCCC-----CCCCceE-Ee-eccCCceeeEEEEeCcCHHHHHHHHh-hcceEEEEcCCchHH
Q 044274 110 PDKKTIFLDLDETLIHSKPDPP-----PERFDFI-VR-PRIDGEVLNFYVLKRPGVDAFLDAIS-KKYEVVVFTAGLKEY 181 (278)
Q Consensus 110 ~~KktLVLDLDeTLIhs~~~~~-----~~~~Df~-v~-~~~~~~~~~~~v~~RP~l~eFL~~l~-~~fEIvI~Taa~~~Y 181 (278)
.+|..+|||+|||++....... ...++-. .. -...+. --.-|++.+|++.+. .-++|++.|.=.+..
T Consensus 75 dg~~A~V~DIDET~LsN~py~~~~~~g~~~~~~~~~~~wv~~~~-----apaip~al~l~~~l~~~G~~Vf~lTGR~e~~ 149 (229)
T TIGR01675 75 DGMDAWIFDVDDTLLSNIPYYKKHGYGTEKTDPTAFWLWLGKGA-----APALPEGLKLYQKIIELGIKIFLLSGRWEEL 149 (229)
T ss_pred CCCcEEEEccccccccCHHHHHHhccCCCcCCHHHHHHHHHcCC-----CCCCHHHHHHHHHHHHCCCEEEEEcCCChHH
Confidence 4899999999999998652110 0111100 00 000111 135789999999987 568888888777666
Q ss_pred HHHHHHHhCCCCc--ccEEEecC
Q 044274 182 ASLLLNRLDRNGV--ISHRLYRD 202 (278)
Q Consensus 182 A~~vl~~LDp~~~--f~~~l~R~ 202 (278)
.+..++.|...|+ ..+.+.|.
T Consensus 150 r~~T~~nL~~~G~~~~~~LiLR~ 172 (229)
T TIGR01675 150 RNATLDNLINAGFTGWKHLILRG 172 (229)
T ss_pred HHHHHHHHHHcCCCCcCeeeecC
Confidence 5556666655551 35566664
No 70
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=88.66 E-value=0.4 Score=44.35 Aligned_cols=83 Identities=27% Similarity=0.394 Sum_probs=49.7
Q ss_pred CCeEEEEeCCCceeeccCCCC----------CCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHhhcceEEEEcCC-ch
Q 044274 111 DKKTIFLDLDETLIHSKPDPP----------PERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAISKKYEVVVFTAG-LK 179 (278)
Q Consensus 111 ~KktLVLDLDeTLIhs~~~~~----------~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~~~fEIvI~Taa-~~ 179 (278)
+++.+|||||||++..+.... +..+|..|. .+ --..=||.-|||+++-++=-.|.|-+- ..
T Consensus 78 K~~aVvlDlDETvLdNs~Yqgy~v~nnk~f~pe~Wd~wV~---a~-----~sk~vpGA~eFl~Yvn~~Gg~ifyiSNR~~ 149 (274)
T COG2503 78 KKKAVVLDLDETVLDNSAYQGYQVLNNKGFTPETWDKWVQ---AK-----KSKAVPGAVEFLNYVNSNGGKIFYISNRDQ 149 (274)
T ss_pred CCceEEEecchHhhcCccccchhhhcCCCCCccchHHHHh---hc-----ccccCccHHHHHHHHHhcCcEEEEEeccch
Confidence 677999999999998765431 112222221 00 013459999999999988776666544 34
Q ss_pred HH-HHHHHHHhCCCC----cccEEEec
Q 044274 180 EY-ASLLLNRLDRNG----VISHRLYR 201 (278)
Q Consensus 180 ~Y-A~~vl~~LDp~~----~f~~~l~R 201 (278)
+. .+.-++-|-..| .-.+.|+.
T Consensus 150 ~~~~~~T~~nLk~~g~~~~~~~~~llk 176 (274)
T COG2503 150 ENEKDGTIENLKSEGLPQVLESHLLLK 176 (274)
T ss_pred hcccchhHHHHHHcCcccccccceEEe
Confidence 44 455555554322 44455543
No 71
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=88.27 E-value=1.4 Score=41.87 Aligned_cols=57 Identities=14% Similarity=0.224 Sum_probs=40.2
Q ss_pred CeEEEEeCCCceeeccCCCCCCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHhh-cceEEEEcCCchHHHHHHHHHhC
Q 044274 112 KKTIFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAISK-KYEVVVFTAGLKEYASLLLNRLD 190 (278)
Q Consensus 112 KktLVLDLDeTLIhs~~~~~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~~-~fEIvI~Taa~~~YA~~vl~~LD 190 (278)
++.+++||||||+...... -+-..+-|+.+.+ ...||+-|+-+..-+..+.+.|.
T Consensus 1 ~KLIftDLDGTLLd~~~~~------------------------~~~a~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~~~Lg 56 (302)
T PRK12702 1 MRLVLSSLDGSLLDLEFNS------------------------YGAARQALAALERRSIPLVLYSLRTRAQLEHLCRQLR 56 (302)
T ss_pred CcEEEEeCCCCCcCCCCcC------------------------CHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhC
Confidence 3688999999999864321 1235667888875 47777777777777777888876
Q ss_pred CC
Q 044274 191 RN 192 (278)
Q Consensus 191 p~ 192 (278)
..
T Consensus 57 l~ 58 (302)
T PRK12702 57 LE 58 (302)
T ss_pred CC
Confidence 44
No 72
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=88.13 E-value=0.87 Score=41.84 Aligned_cols=41 Identities=20% Similarity=0.315 Sum_probs=30.9
Q ss_pred eEEEEeCCCceeeccCCCCCCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHhh-cceEEEEcCCc
Q 044274 113 KTIFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAISK-KYEVVVFTAGL 178 (278)
Q Consensus 113 ktLVLDLDeTLIhs~~~~~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~~-~fEIvI~Taa~ 178 (278)
+.+++|+||||+.... .=|+..++|+.+.+ ...+++-|+..
T Consensus 3 ~~~~~D~DGtl~~~~~-------------------------~~~ga~e~l~~L~~~g~~~~~~Tnns 44 (279)
T TIGR01452 3 QGFIFDCDGVLWLGER-------------------------VVPGAPELLDRLARAGKAALFVTNNS 44 (279)
T ss_pred cEEEEeCCCceEcCCe-------------------------eCcCHHHHHHHHHHCCCeEEEEeCCC
Confidence 4788999999977522 24778899999985 57788888743
No 73
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=87.80 E-value=0.28 Score=44.72 Aligned_cols=50 Identities=18% Similarity=0.219 Sum_probs=43.2
Q ss_pred EEeCcCHHHHHHHHhhcceEEEEcCCchHHHHHHHHHhCCCCcccEEEecC
Q 044274 152 VLKRPGVDAFLDAISKKYEVVVFTAGLKEYASLLLNRLDRNGVISHRLYRD 202 (278)
Q Consensus 152 v~~RP~l~eFL~~l~~~fEIvI~Taa~~~YA~~vl~~LDp~~~f~~~l~R~ 202 (278)
++.=|-|++||-.|.+.+ .++||.|.+..|..++..|--..+|.++.+-+
T Consensus 99 LkPD~~LRnlLL~l~~r~-k~~FTNa~k~HA~r~Lk~LGieDcFegii~~e 148 (244)
T KOG3109|consen 99 LKPDPVLRNLLLSLKKRR-KWIFTNAYKVHAIRILKKLGIEDCFEGIICFE 148 (244)
T ss_pred cCCCHHHHHHHHhCcccc-EEEecCCcHHHHHHHHHHhChHHhccceeEee
Confidence 666778999999999887 89999999999999999998777888876644
No 74
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=87.34 E-value=1.3 Score=38.33 Aligned_cols=55 Identities=13% Similarity=0.207 Sum_probs=48.3
Q ss_pred EEeCcCHHHHHHHHhhcceEEEEcCCchHHHHHHHHHhCCCCcccEEEecCCccc
Q 044274 152 VLKRPGVDAFLDAISKKYEVVVFTAGLKEYASLLLNRLDRNGVISHRLYRDSCKQ 206 (278)
Q Consensus 152 v~~RP~l~eFL~~l~~~fEIvI~Taa~~~YA~~vl~~LDp~~~f~~~l~R~~c~~ 206 (278)
+..+||+.++|+.+.+.+.++|-|++...++..+++.+.-..+|..+++.+++..
T Consensus 96 ~~~~~g~~~~L~~l~~~~~~~i~Sn~~~~~~~~~l~~~~l~~~fd~i~~~~~~~~ 150 (224)
T TIGR02254 96 HQLLPGAFELMENLQQKFRLYIVTNGVRETQYKRLRKSGLFPFFDDIFVSEDAGI 150 (224)
T ss_pred CeeCccHHHHHHHHHhcCcEEEEeCCchHHHHHHHHHCCcHhhcCEEEEcCccCC
Confidence 5689999999999997799999999999999999999877778998888776543
No 75
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=87.27 E-value=1.2 Score=38.84 Aligned_cols=13 Identities=38% Similarity=0.475 Sum_probs=11.1
Q ss_pred EEEeCCCceeecc
Q 044274 115 IFLDLDETLIHSK 127 (278)
Q Consensus 115 LVLDLDeTLIhs~ 127 (278)
+++||||||+.+.
T Consensus 1 i~~DlDGTLl~~~ 13 (225)
T TIGR01482 1 IASDIDGTLTDPN 13 (225)
T ss_pred CeEeccCccCCCC
Confidence 5899999999764
No 76
>PRK09449 dUMP phosphatase; Provisional
Probab=87.06 E-value=1 Score=39.36 Aligned_cols=55 Identities=18% Similarity=0.264 Sum_probs=47.8
Q ss_pred EEeCcCHHHHHHHHhhcceEEEEcCCchHHHHHHHHHhCCCCcccEEEecCCccc
Q 044274 152 VLKRPGVDAFLDAISKKYEVVVFTAGLKEYASLLLNRLDRNGVISHRLYRDSCKQ 206 (278)
Q Consensus 152 v~~RP~l~eFL~~l~~~fEIvI~Taa~~~YA~~vl~~LDp~~~f~~~l~R~~c~~ 206 (278)
+...||+.++|+.|.+.|.+.|-|++...++...++.+...++|...+..+++..
T Consensus 94 ~~~~~g~~~~L~~L~~~~~~~i~Tn~~~~~~~~~l~~~~l~~~fd~v~~~~~~~~ 148 (224)
T PRK09449 94 CTPLPGAVELLNALRGKVKMGIITNGFTELQQVRLERTGLRDYFDLLVISEQVGV 148 (224)
T ss_pred CccCccHHHHHHHHHhCCeEEEEeCCcHHHHHHHHHhCChHHHcCEEEEECccCC
Confidence 4578999999999998899999999999999999998877778888888776643
No 77
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=86.89 E-value=1.5 Score=37.80 Aligned_cols=53 Identities=26% Similarity=0.181 Sum_probs=45.4
Q ss_pred EEeCcCHHHHHHHHhh-cceEEEEcCCchHHHHHHHHHhCCCCcccEEEecCCc
Q 044274 152 VLKRPGVDAFLDAISK-KYEVVVFTAGLKEYASLLLNRLDRNGVISHRLYRDSC 204 (278)
Q Consensus 152 v~~RP~l~eFL~~l~~-~fEIvI~Taa~~~YA~~vl~~LDp~~~f~~~l~R~~c 204 (278)
+...||+.++|+.+.+ .+.++|.|++...++..+++.++-.++|...+..++.
T Consensus 84 ~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~~~~ 137 (213)
T TIGR01449 84 TSVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELLGLAKYFSVLIGGDSL 137 (213)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCcHhhCcEEEecCCC
Confidence 5689999999999985 5999999999999999999998877778877766543
No 78
>PRK06769 hypothetical protein; Validated
Probab=86.48 E-value=1 Score=38.61 Aligned_cols=51 Identities=22% Similarity=0.142 Sum_probs=35.4
Q ss_pred CeEEEEeCCCceeeccCCCCCCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHhh-cceEEEEcCCch
Q 044274 112 KKTIFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAISK-KYEVVVFTAGLK 179 (278)
Q Consensus 112 KktLVLDLDeTLIhs~~~~~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~~-~fEIvI~Taa~~ 179 (278)
=+.|+||+||||.-... +. . .--+..-|++.++|++|.+ .|.++|-|++..
T Consensus 4 ~~~~~~d~d~~~~~~~~---------~~-----~---~~~~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~ 55 (173)
T PRK06769 4 IQAIFIDRDGTIGGDTT---------IH-----Y---PGSFTLFPFTKASLQKLKANHIKIFSFTNQPG 55 (173)
T ss_pred CcEEEEeCCCcccCCCC---------CC-----C---HHHeEECCCHHHHHHHHHHCCCEEEEEECCch
Confidence 35789999999952211 00 0 0012357999999999985 699999998764
No 79
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=86.47 E-value=1.3 Score=39.79 Aligned_cols=57 Identities=18% Similarity=0.232 Sum_probs=35.7
Q ss_pred CeEEEEeCCCceeeccCCCCCCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHhhcceEEEEcCCch-HHHHHHHHHh
Q 044274 112 KKTIFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAISKKYEVVVFTAGLK-EYASLLLNRL 189 (278)
Q Consensus 112 KktLVLDLDeTLIhs~~~~~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~~~fEIvI~Taa~~-~YA~~vl~~L 189 (278)
+..|+.||||||+.+..... ...|.+.+.++.+.+.--.+|+.+|.. .-+..+++.+
T Consensus 1 ~~li~tDlDGTLl~~~~~~~---------------------~~~~~~~~~i~~~~~~gi~fv~aTGR~~~~~~~~~~~~ 58 (249)
T TIGR01485 1 RLLLVSDLDNTLVDHTDGDN---------------------QALLRLNALLEDHRGEDSLLVYSTGRSPHSYKELQKQK 58 (249)
T ss_pred CeEEEEcCCCcCcCCCCCCh---------------------HHHHHHHHHHHHhhccCceEEEEcCCCHHHHHHHHhcC
Confidence 46788899999996421110 135777788887777665666666654 3344554444
No 80
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=86.43 E-value=0.23 Score=49.90 Aligned_cols=137 Identities=17% Similarity=0.117 Sum_probs=66.2
Q ss_pred chhhHHHHHHHHHHHHhhhhhc--C--Ccccc--ccceeeccc-CcCCCCCCCcCCcccceeeecCCCCCCCCCCCCCCe
Q 044274 41 NKSLHTCKRRLARIFSKLVRIT--T--PSRCK--TKGYKILRS-QDKDSNSNGEDQLLVPQVLFFGNEHLLPPLISPDKK 113 (278)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~--~~g~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~lLPp~~~~~Kk 113 (278)
..+...||.|..-|+...+..+ . ++.+- +.|-.+.+. +.....+.+.+-....-. -=+-.+++++...+.++
T Consensus 145 ~~~~~~~r~~n~el~n~~~~~~r~~~fD~~~l~srig~~~~~d~k~~~~a~~~~n~e~~~l~-~~ei~Sl~~A~~g~~kK 223 (574)
T COG3882 145 GEFSARWRLRNNELLNDGKAEGRWLMFDQEALASRIGIERWFDPKAYHSASVPFNVELCPLA-ADEIASLLAAMSGKSKK 223 (574)
T ss_pred hhHHHHHHHHHHHHhhhhhcccceeeccHHHHHhHhhhhhhcchHHHHhccCCcchhhhhHh-hHHHHHHHHHhhCcccc
Confidence 3345568888888888877766 1 11111 234443332 111122211110000000 00013577888788999
Q ss_pred EEEEeCCCceeeccCCCCCCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHhh-cceEEEEcCCchHHHHHHH
Q 044274 114 TIFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAISK-KYEVVVFTAGLKEYASLLL 186 (278)
Q Consensus 114 tLVLDLDeTLIhs~~~~~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~~-~fEIvI~Taa~~~YA~~vl 186 (278)
+||||||+||.--...... -.-+.+....+|.. | =-+++|...+.+ -+=+.|-|-....-|..+.
T Consensus 224 ~LVLDLDNTLWGGVIGedG-v~GI~Ls~~~~G~~--f-----k~fQ~~Ik~l~kqGVlLav~SKN~~~da~evF 289 (574)
T COG3882 224 ALVLDLDNTLWGGVIGEDG-VDGIRLSNSAEGEA--F-----KTFQNFIKGLKKQGVLLAVCSKNTEKDAKEVF 289 (574)
T ss_pred eEEEecCCccccccccccc-ccceeecCCCCchh--H-----HHHHHHHHHHHhccEEEEEecCCchhhHHHHH
Confidence 9999999999876544321 11111111112211 0 014555666653 3455566655555555543
No 81
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=86.17 E-value=1.6 Score=37.37 Aligned_cols=54 Identities=19% Similarity=0.310 Sum_probs=45.6
Q ss_pred EEeCcCHHHHHHHHhhc-ceEEEEcCCchHHHHHHHHHhCCCCcccEEEecCCcc
Q 044274 152 VLKRPGVDAFLDAISKK-YEVVVFTAGLKEYASLLLNRLDRNGVISHRLYRDSCK 205 (278)
Q Consensus 152 v~~RP~l~eFL~~l~~~-fEIvI~Taa~~~YA~~vl~~LDp~~~f~~~l~R~~c~ 205 (278)
+...|++.++|+.+.+. |.++|-|++...++..+++.+.-..+|..++..++..
T Consensus 91 ~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~gl~~~fd~i~~s~~~~ 145 (198)
T TIGR01428 91 LPPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHAGLDDPFDAVLSADAVR 145 (198)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHCCChhhhheeEehhhcC
Confidence 34679999999999975 9999999999999999999887666788888766543
No 82
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=85.54 E-value=1.7 Score=39.94 Aligned_cols=55 Identities=20% Similarity=0.328 Sum_probs=48.0
Q ss_pred EEeCcCHHHHHHHHhh-cceEEEEcCCchHHHHHHHHHhCCCCcccEEEecCCccc
Q 044274 152 VLKRPGVDAFLDAISK-KYEVVVFTAGLKEYASLLLNRLDRNGVISHRLYRDSCKQ 206 (278)
Q Consensus 152 v~~RP~l~eFL~~l~~-~fEIvI~Taa~~~YA~~vl~~LDp~~~f~~~l~R~~c~~ 206 (278)
+...||+.++|+.|.+ .+.++|-|++...++..+++.+.-..+|..++..+++..
T Consensus 108 ~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~~Fd~ii~~~d~~~ 163 (260)
T PLN03243 108 YRLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAVGMEGFFSVVLAAEDVYR 163 (260)
T ss_pred cccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHcCCHhhCcEEEecccCCC
Confidence 4568999999999985 599999999999999999999877678999988877653
No 83
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=85.41 E-value=1.1 Score=40.36 Aligned_cols=43 Identities=23% Similarity=0.385 Sum_probs=30.0
Q ss_pred CCeEEEEeCCCceeeccCCCCCCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHhhcceEE
Q 044274 111 DKKTIFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAISKKYEVV 172 (278)
Q Consensus 111 ~KktLVLDLDeTLIhs~~~~~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~~~fEIv 172 (278)
++..|+||+||||+-....+.. ...=|.+.+.|+.|.+....+
T Consensus 2 ~~~~l~lD~DGTL~~~~~~p~~-------------------~~~~~~~~~~L~~L~~~~~~~ 44 (244)
T TIGR00685 2 RKRAFFFDYDGTLSEIVPDPDA-------------------AVVSDRLLTILQKLAARPHNA 44 (244)
T ss_pred CcEEEEEecCccccCCcCCCcc-------------------cCCCHHHHHHHHHHHhCCCCe
Confidence 5788999999999975433311 123477888888888776554
No 84
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=85.32 E-value=2.2 Score=37.05 Aligned_cols=55 Identities=15% Similarity=0.187 Sum_probs=47.7
Q ss_pred EEeCcCHHHHHHHHhh-cceEEEEcCCchHHHHHHHHHhCCCCcccEEEecCCccc
Q 044274 152 VLKRPGVDAFLDAISK-KYEVVVFTAGLKEYASLLLNRLDRNGVISHRLYRDSCKQ 206 (278)
Q Consensus 152 v~~RP~l~eFL~~l~~-~fEIvI~Taa~~~YA~~vl~~LDp~~~f~~~l~R~~c~~ 206 (278)
+...||+.++|+.+.+ .+.++|-|++...++..+++.++-..+|...+..+++..
T Consensus 81 ~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~gl~~~f~~i~~~~~~~~ 136 (214)
T PRK13288 81 VTEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLTGLDEFFDVVITLDDVEH 136 (214)
T ss_pred cccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChhceeEEEecCcCCC
Confidence 4578999999999985 699999999999999999999987778888888776643
No 85
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=85.23 E-value=2 Score=38.63 Aligned_cols=55 Identities=15% Similarity=0.224 Sum_probs=48.4
Q ss_pred EEeCcCHHHHHHHHh-hcceEEEEcCCchHHHHHHHHHhCCCCcccEEEecCCccc
Q 044274 152 VLKRPGVDAFLDAIS-KKYEVVVFTAGLKEYASLLLNRLDRNGVISHRLYRDSCKQ 206 (278)
Q Consensus 152 v~~RP~l~eFL~~l~-~~fEIvI~Taa~~~YA~~vl~~LDp~~~f~~~l~R~~c~~ 206 (278)
+..-||+.++|+.|. +.+.+.|-|++...++..+++.++-..+|..++..+++..
T Consensus 107 ~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~~Fd~iv~~~~~~~ 162 (248)
T PLN02770 107 LKPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLLGLSDFFQAVIIGSECEH 162 (248)
T ss_pred CCcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCChhhCcEEEecCcCCC
Confidence 456799999999997 5699999999999999999999988888999888887654
No 86
>PLN02423 phosphomannomutase
Probab=84.96 E-value=1.9 Score=39.03 Aligned_cols=41 Identities=22% Similarity=0.331 Sum_probs=26.9
Q ss_pred CeEEEEeCCCceeeccCCCCCCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHhhcceEEEEcC
Q 044274 112 KKTIFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAISKKYEVVVFTA 176 (278)
Q Consensus 112 KktLVLDLDeTLIhs~~~~~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~~~fEIvI~Ta 176 (278)
+..+++||||||+..... +-|...+.++.+.+...+++-|.
T Consensus 7 ~~i~~~D~DGTLl~~~~~------------------------i~~~~~~ai~~l~~~i~fviaTG 47 (245)
T PLN02423 7 GVIALFDVDGTLTAPRKE------------------------ATPEMLEFMKELRKVVTVGVVGG 47 (245)
T ss_pred ceEEEEeccCCCcCCCCc------------------------CCHHHHHHHHHHHhCCEEEEECC
Confidence 445569999999976432 23555677888887744444444
No 87
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=84.83 E-value=2.1 Score=36.91 Aligned_cols=54 Identities=22% Similarity=0.191 Sum_probs=46.9
Q ss_pred EEeCcCHHHHHHHHhh-cceEEEEcCCchHHHHHHHHHhCCCCcccEEEecCCcc
Q 044274 152 VLKRPGVDAFLDAISK-KYEVVVFTAGLKEYASLLLNRLDRNGVISHRLYRDSCK 205 (278)
Q Consensus 152 v~~RP~l~eFL~~l~~-~fEIvI~Taa~~~YA~~vl~~LDp~~~f~~~l~R~~c~ 205 (278)
+...||+.++|+.|.+ .+.++|.|++...++..+++.++-.++|...+..+++.
T Consensus 74 ~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~ 128 (205)
T TIGR01454 74 VEVFPGVPELLAELRADGVGTAIATGKSGPRARSLLEALGLLPLFDHVIGSDEVP 128 (205)
T ss_pred cccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHcCChhheeeEEecCcCC
Confidence 4568999999999984 69999999999999999999998878888888776654
No 88
>PLN02887 hydrolase family protein
Probab=84.54 E-value=3.9 Score=42.15 Aligned_cols=58 Identities=26% Similarity=0.285 Sum_probs=40.4
Q ss_pred CCCeEEEEeCCCceeeccCCCCCCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHhhc-ceEEEEcCCchHHHHHHHHH
Q 044274 110 PDKKTIFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAISKK-YEVVVFTAGLKEYASLLLNR 188 (278)
Q Consensus 110 ~~KktLVLDLDeTLIhs~~~~~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~~~-fEIvI~Taa~~~YA~~vl~~ 188 (278)
++-+.|++||||||+..... +-|...+-|+.+.+. ..++|=|.=...-+..+++.
T Consensus 306 ~~iKLIa~DLDGTLLn~d~~------------------------Is~~t~eAI~kl~ekGi~~vIATGR~~~~i~~~l~~ 361 (580)
T PLN02887 306 PKFSYIFCDMDGTLLNSKSQ------------------------ISETNAKALKEALSRGVKVVIATGKARPAVIDILKM 361 (580)
T ss_pred cCccEEEEeCCCCCCCCCCc------------------------cCHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHH
Confidence 35679999999999976321 234456777777754 66666666666666777887
Q ss_pred hCC
Q 044274 189 LDR 191 (278)
Q Consensus 189 LDp 191 (278)
++.
T Consensus 362 L~l 364 (580)
T PLN02887 362 VDL 364 (580)
T ss_pred hCc
Confidence 764
No 89
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=84.38 E-value=2.9 Score=34.93 Aligned_cols=54 Identities=15% Similarity=0.256 Sum_probs=45.0
Q ss_pred EEeCcCHHHHHHHHhh-cceEEEEcCCchHHHHHHHHHhCCCCcccEEEecCCcc
Q 044274 152 VLKRPGVDAFLDAISK-KYEVVVFTAGLKEYASLLLNRLDRNGVISHRLYRDSCK 205 (278)
Q Consensus 152 v~~RP~l~eFL~~l~~-~fEIvI~Taa~~~YA~~vl~~LDp~~~f~~~l~R~~c~ 205 (278)
+..+|++.++|+.+.+ .+.++|-|++...+++.+++.++-..+|...+..+...
T Consensus 71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~ 125 (188)
T TIGR01489 71 APIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGIGEKDVFIEIYSNPASF 125 (188)
T ss_pred CCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHcCChhheeEEeccCceE
Confidence 5789999999999975 59999999999999999999887666777776554444
No 90
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=84.38 E-value=2.5 Score=35.86 Aligned_cols=48 Identities=17% Similarity=0.257 Sum_probs=40.6
Q ss_pred EEeCcCHHHHHHHHh-hcceEEEEcCCchHHHHHHHHHhCCCCcccEEE
Q 044274 152 VLKRPGVDAFLDAIS-KKYEVVVFTAGLKEYASLLLNRLDRNGVISHRL 199 (278)
Q Consensus 152 v~~RP~l~eFL~~l~-~~fEIvI~Taa~~~YA~~vl~~LDp~~~f~~~l 199 (278)
+..+||+.++|+.+. +.+.++|.|++...+++.+++.+....+|...+
T Consensus 79 ~~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~ 127 (201)
T TIGR01491 79 ISLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPDYVYSNEL 127 (201)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCCeEEEEEE
Confidence 457999999999998 569999999999999999999987655555443
No 91
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=84.34 E-value=16 Score=32.87 Aligned_cols=41 Identities=17% Similarity=0.410 Sum_probs=36.9
Q ss_pred EEeCcCHHHHHHHHhh-cceEEEEcCCchHHHHHHHHHhCCC
Q 044274 152 VLKRPGVDAFLDAISK-KYEVVVFTAGLKEYASLLLNRLDRN 192 (278)
Q Consensus 152 v~~RP~l~eFL~~l~~-~fEIvI~Taa~~~YA~~vl~~LDp~ 192 (278)
+.++||..+|.+++.+ .-.++|-|+|+..|..++++.|-.+
T Consensus 72 i~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivgk 113 (220)
T COG4359 72 IKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGK 113 (220)
T ss_pred cccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhccc
Confidence 6799999999999995 5899999999999999999998543
No 92
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=84.26 E-value=1.6 Score=38.47 Aligned_cols=38 Identities=21% Similarity=0.362 Sum_probs=35.2
Q ss_pred EEeCcCHHHHHHHHhh-cceEEEEcCCchHHHHHHHHHh
Q 044274 152 VLKRPGVDAFLDAISK-KYEVVVFTAGLKEYASLLLNRL 189 (278)
Q Consensus 152 v~~RP~l~eFL~~l~~-~fEIvI~Taa~~~YA~~vl~~L 189 (278)
+..+||+.+||+.+.+ .+.++|.|++...|++.+++.+
T Consensus 73 ~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~ 111 (219)
T PRK09552 73 AEIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGL 111 (219)
T ss_pred CCcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHh
Confidence 5789999999999984 6999999999999999999986
No 93
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=84.12 E-value=1.9 Score=38.12 Aligned_cols=48 Identities=21% Similarity=0.472 Sum_probs=41.5
Q ss_pred EEeCcCHHHHHHHHhhcceEEEEcCCchHHHHHHHHHhCCCCcccEEE
Q 044274 152 VLKRPGVDAFLDAISKKYEVVVFTAGLKEYASLLLNRLDRNGVISHRL 199 (278)
Q Consensus 152 v~~RP~l~eFL~~l~~~fEIvI~Taa~~~YA~~vl~~LDp~~~f~~~l 199 (278)
+..+||+.+||+.+.+.+.++|-|++...+++++++.+.-..+|...+
T Consensus 67 i~l~pga~ell~~lk~~~~~~IVS~~~~~~~~~il~~lgi~~~~an~l 114 (203)
T TIGR02137 67 LKPLEGAVEFVDWLRERFQVVILSDTFYEFSQPLMRQLGFPTLLCHKL 114 (203)
T ss_pred CCCCccHHHHHHHHHhCCeEEEEeCChHHHHHHHHHHcCCchhhceee
Confidence 457999999999999888999999999999999999997666565443
No 94
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=84.07 E-value=1.7 Score=37.23 Aligned_cols=46 Identities=26% Similarity=0.515 Sum_probs=39.3
Q ss_pred EEeCcCHHHHHHHHhhcceEEEEcCCchHHHHHHHHHhCCCCcccE
Q 044274 152 VLKRPGVDAFLDAISKKYEVVVFTAGLKEYASLLLNRLDRNGVISH 197 (278)
Q Consensus 152 v~~RP~l~eFL~~l~~~fEIvI~Taa~~~YA~~vl~~LDp~~~f~~ 197 (278)
+...||+.+||+.+.+.+.++|-|++...+++.+++.+.-..+|..
T Consensus 67 ~~~~pg~~e~L~~L~~~~~~~IvS~~~~~~~~~~l~~~gl~~~f~~ 112 (205)
T PRK13582 67 LDPLPGAVEFLDWLRERFQVVILSDTFYEFAGPLMRQLGWPTLFCH 112 (205)
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEeCCcHHHHHHHHHHcCCchhhcc
Confidence 4468999999999997799999999999999999999876555543
No 95
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=83.89 E-value=1.6 Score=39.15 Aligned_cols=49 Identities=24% Similarity=0.355 Sum_probs=35.0
Q ss_pred EEEeCCCceeeccCCCCCCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHhh-cceEEEEcCCc----hHHHHHHHHH
Q 044274 115 IFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAISK-KYEVVVFTAGL----KEYASLLLNR 188 (278)
Q Consensus 115 LVLDLDeTLIhs~~~~~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~~-~fEIvI~Taa~----~~YA~~vl~~ 188 (278)
++||+||||+..... =|+..++|..+.+ .+.+++-|.+. .++++.+.+.
T Consensus 1 ~lfD~DGvL~~~~~~-------------------------~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~ 54 (236)
T TIGR01460 1 FLFDIDGVLWLGHKP-------------------------IPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSL 54 (236)
T ss_pred CEEeCcCccCcCCcc-------------------------CcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 479999999987431 2578889998875 48888887443 5566666663
No 96
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=83.89 E-value=2.3 Score=38.54 Aligned_cols=39 Identities=26% Similarity=0.449 Sum_probs=26.9
Q ss_pred eEEEEeCCCceeeccCCCCCCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHhh-cceEEEEcC
Q 044274 113 KTIFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAISK-KYEVVVFTA 176 (278)
Q Consensus 113 ktLVLDLDeTLIhs~~~~~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~~-~fEIvI~Ta 176 (278)
+.+++|+||||+..... =|+..++|+.+.+ ...+++-|.
T Consensus 2 ~~~~~D~DGtl~~~~~~-------------------------i~~a~~~l~~l~~~g~~~~~~Tn 41 (249)
T TIGR01457 2 KGYLIDLDGTMYKGKER-------------------------IPEAETFVHELQKRDIPYLFVTN 41 (249)
T ss_pred CEEEEeCCCceEcCCee-------------------------CcCHHHHHHHHHHCCCeEEEEeC
Confidence 47899999999876321 2466777777774 466666664
No 97
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=83.26 E-value=3 Score=36.11 Aligned_cols=53 Identities=26% Similarity=0.269 Sum_probs=44.5
Q ss_pred EEeCcCHHHHHHHHhh-cceEEEEcCCchHHHHHHHHHhCCCCcccEEEecCCc
Q 044274 152 VLKRPGVDAFLDAISK-KYEVVVFTAGLKEYASLLLNRLDRNGVISHRLYRDSC 204 (278)
Q Consensus 152 v~~RP~l~eFL~~l~~-~fEIvI~Taa~~~YA~~vl~~LDp~~~f~~~l~R~~c 204 (278)
....||+.+||+.+.+ .+.++|.|++...++..+++.++-..+|...+..+.+
T Consensus 92 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~~~~ 145 (226)
T PRK13222 92 SRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEALGIADYFSVVIGGDSL 145 (226)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCccCccEEEcCCCC
Confidence 5689999999999985 6999999999999999999998766677766655543
No 98
>PHA02597 30.2 hypothetical protein; Provisional
Probab=83.10 E-value=0.7 Score=39.69 Aligned_cols=53 Identities=17% Similarity=0.167 Sum_probs=35.6
Q ss_pred EEeCcCHHHHHHHHhhcceEEEEcCCchHHHHHHHHHhCCCC----cccEEEecCCc
Q 044274 152 VLKRPGVDAFLDAISKKYEVVVFTAGLKEYASLLLNRLDRNG----VISHRLYRDSC 204 (278)
Q Consensus 152 v~~RP~l~eFL~~l~~~fEIvI~Taa~~~YA~~vl~~LDp~~----~f~~~l~R~~c 204 (278)
+...||+.++|+.|.+.+.+++-|++.......++..+.-.+ +|+..+..+.+
T Consensus 73 ~~~~pG~~e~L~~L~~~~~~~i~Tn~~~~~~~~~~~~~~l~~~f~~~f~~i~~~~~~ 129 (197)
T PHA02597 73 LSAYDDALDVINKLKEDYDFVAVTALGDSIDALLNRQFNLNALFPGAFSEVLMCGHD 129 (197)
T ss_pred ccCCCCHHHHHHHHHhcCCEEEEeCCccchhHHHHhhCCHHHhCCCcccEEEEeccC
Confidence 457999999999999878877777765555444555553322 45566655554
No 99
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=82.57 E-value=3.2 Score=43.61 Aligned_cols=58 Identities=22% Similarity=0.206 Sum_probs=41.7
Q ss_pred CCCeEEEEeCCCceeeccCCCCCCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHhh-cceEEEEcCCchHHHHHHHHH
Q 044274 110 PDKKTIFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAISK-KYEVVVFTAGLKEYASLLLNR 188 (278)
Q Consensus 110 ~~KktLVLDLDeTLIhs~~~~~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~~-~fEIvI~Taa~~~YA~~vl~~ 188 (278)
..++.+++||||||+...... . +-..+-|+.+.+ ...+++-|.-....+..+++.
T Consensus 414 ~~~KLIfsDLDGTLLd~d~~i----------------------~--~~t~eAL~~L~ekGI~~VIATGRs~~~i~~l~~~ 469 (694)
T PRK14502 414 QFKKIVYTDLDGTLLNPLTYS----------------------Y--STALDALRLLKDKELPLVFCSAKTMGEQDLYRNE 469 (694)
T ss_pred ceeeEEEEECcCCCcCCCCcc----------------------C--HHHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHH
Confidence 468899999999999864321 0 123456777764 477888888888888888888
Q ss_pred hCC
Q 044274 189 LDR 191 (278)
Q Consensus 189 LDp 191 (278)
++.
T Consensus 470 Lgl 472 (694)
T PRK14502 470 LGI 472 (694)
T ss_pred cCC
Confidence 764
No 100
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=82.33 E-value=0.69 Score=39.11 Aligned_cols=52 Identities=17% Similarity=0.092 Sum_probs=43.3
Q ss_pred eCcCHHHHHHHHhhcceEEEEcCCchHHHHHHHHHhCCCCcccEEEecCCccc
Q 044274 154 KRPGVDAFLDAISKKYEVVVFTAGLKEYASLLLNRLDRNGVISHRLYRDSCKQ 206 (278)
Q Consensus 154 ~RP~l~eFL~~l~~~fEIvI~Taa~~~YA~~vl~~LDp~~~f~~~l~R~~c~~ 206 (278)
.-|+ .+.|+.+.+.+.++|-|++...+++.+++.+.-.++|..++..+++..
T Consensus 89 ~~~~-~e~L~~L~~~~~l~I~T~~~~~~~~~~l~~~~l~~~fd~i~~~~~~~~ 140 (188)
T PRK10725 89 PLPL-IEVVKAWHGRRPMAVGTGSESAIAEALLAHLGLRRYFDAVVAADDVQH 140 (188)
T ss_pred CccH-HHHHHHHHhCCCEEEEcCCchHHHHHHHHhCCcHhHceEEEehhhccC
Confidence 3465 488999987789999999999999999999887778988888776643
No 101
>PLN02151 trehalose-phosphatase
Probab=82.10 E-value=2.5 Score=41.05 Aligned_cols=58 Identities=19% Similarity=0.297 Sum_probs=42.8
Q ss_pred CCeEEEEeCCCceeeccCCCCCCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHhhcceEEEEcCCchHHHHHHHH
Q 044274 111 DKKTIFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAISKKYEVVVFTAGLKEYASLLLN 187 (278)
Q Consensus 111 ~KktLVLDLDeTLIhs~~~~~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~~~fEIvI~Taa~~~YA~~vl~ 187 (278)
++..|+||+||||+-....|.. +..-|.+.+-|+.|++.+.++|-|--...-++.++.
T Consensus 97 ~~~ll~lDyDGTL~PIv~~P~~-------------------A~~~~~~~~aL~~La~~~~vaIvSGR~~~~l~~~~~ 154 (354)
T PLN02151 97 KQIVMFLDYDGTLSPIVDDPDR-------------------AFMSKKMRNTVRKLAKCFPTAIVSGRCREKVSSFVK 154 (354)
T ss_pred CceEEEEecCccCCCCCCCccc-------------------ccCCHHHHHHHHHHhcCCCEEEEECCCHHHHHHHcC
Confidence 6788999999999955433311 124678889999999888888888777777666664
No 102
>PRK11587 putative phosphatase; Provisional
Probab=81.81 E-value=0.72 Score=40.45 Aligned_cols=52 Identities=15% Similarity=0.087 Sum_probs=39.3
Q ss_pred EEeCcCHHHHHHHHh-hcceEEEEcCCchHHHHHHHHHhCCCCcccEEEecCCc
Q 044274 152 VLKRPGVDAFLDAIS-KKYEVVVFTAGLKEYASLLLNRLDRNGVISHRLYRDSC 204 (278)
Q Consensus 152 v~~RP~l~eFL~~l~-~~fEIvI~Taa~~~YA~~vl~~LDp~~~f~~~l~R~~c 204 (278)
+...||+.++|+.|. +.+.++|-|++...++..+++...- ..+...+..+++
T Consensus 82 ~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~~l-~~~~~i~~~~~~ 134 (218)
T PRK11587 82 ITALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAAGL-PAPEVFVTAERV 134 (218)
T ss_pred ceeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhcCC-CCccEEEEHHHh
Confidence 467899999999997 5699999999998888777776543 235555555544
No 103
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=81.45 E-value=3.1 Score=34.49 Aligned_cols=53 Identities=15% Similarity=0.357 Sum_probs=42.4
Q ss_pred EEeCcCHHHHHHHHhh-cceEEEEcCCchHHHHHHHHHhCCCCcccEEEecCCcc
Q 044274 152 VLKRPGVDAFLDAISK-KYEVVVFTAGLKEYASLLLNRLDRNGVISHRLYRDSCK 205 (278)
Q Consensus 152 v~~RP~l~eFL~~l~~-~fEIvI~Taa~~~YA~~vl~~LDp~~~f~~~l~R~~c~ 205 (278)
+...|++.+||+.+.+ .+.++|.|++...+ ..++..++-..+|...++.+.+.
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~~~l~~~f~~i~~~~~~~ 137 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLVQELGLRDLFDVVIFSGDVG 137 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHhcCCHHHCCEEEEcCCCC
Confidence 4678999999999985 69999999999998 66666666666788887765543
No 104
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=81.40 E-value=2.1 Score=40.13 Aligned_cols=39 Identities=23% Similarity=0.505 Sum_probs=35.3
Q ss_pred EEeCcCHHHHHHHHhh-cceEEEEcCCchHHHHHHHHHhC
Q 044274 152 VLKRPGVDAFLDAISK-KYEVVVFTAGLKEYASLLLNRLD 190 (278)
Q Consensus 152 v~~RP~l~eFL~~l~~-~fEIvI~Taa~~~YA~~vl~~LD 190 (278)
+..|||+.+|++.|.+ ...++|+|+|...+++.++..+.
T Consensus 120 l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~lg 159 (277)
T TIGR01544 120 VMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQAG 159 (277)
T ss_pred CccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHcC
Confidence 5689999999999974 59999999999999999999864
No 105
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=81.39 E-value=3.3 Score=34.42 Aligned_cols=48 Identities=21% Similarity=0.459 Sum_probs=39.4
Q ss_pred EEeCcCHHHHHHHHhh-cceEEEEcCCchHHHHHHHHHhCCCCcccEEE
Q 044274 152 VLKRPGVDAFLDAISK-KYEVVVFTAGLKEYASLLLNRLDRNGVISHRL 199 (278)
Q Consensus 152 v~~RP~l~eFL~~l~~-~fEIvI~Taa~~~YA~~vl~~LDp~~~f~~~l 199 (278)
+..+|++.++|+.+.+ .+.++|.|++...|++.+++.+.-..++...+
T Consensus 72 ~~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~~~~~~~~~ 120 (177)
T TIGR01488 72 VALRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGIDDVFANRL 120 (177)
T ss_pred CCcCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCchheeeeE
Confidence 4579999999999974 59999999999999999999986554444443
No 106
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=81.00 E-value=0.85 Score=39.29 Aligned_cols=50 Identities=12% Similarity=0.201 Sum_probs=42.3
Q ss_pred CcCHHHHHHHHhh-cceEEEEcCCchHHHHHHHHHhCCCCcccEEEecCCc
Q 044274 155 RPGVDAFLDAISK-KYEVVVFTAGLKEYASLLLNRLDRNGVISHRLYRDSC 204 (278)
Q Consensus 155 RP~l~eFL~~l~~-~fEIvI~Taa~~~YA~~vl~~LDp~~~f~~~l~R~~c 204 (278)
.|+..++|+.+.+ .+.++|-|++...+++.+++.+.-..+|...+..++.
T Consensus 108 ~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~~f~~~~~~~~~ 158 (197)
T TIGR01548 108 LLTPKGLLRELHRAPKGMAVVTGRPRKDAAKFLTTHGLEILFPVQIWMEDC 158 (197)
T ss_pred ccCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHcCchhhCCEEEeecCC
Confidence 3456999999985 5999999999999999999999877788888776654
No 107
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=80.78 E-value=2.5 Score=37.05 Aligned_cols=41 Identities=20% Similarity=0.282 Sum_probs=36.9
Q ss_pred EEEeCcCHHHHHHHHhh-cceEEEEcCCchHHHHHHHHHhCC
Q 044274 151 YVLKRPGVDAFLDAISK-KYEVVVFTAGLKEYASLLLNRLDR 191 (278)
Q Consensus 151 ~v~~RP~l~eFL~~l~~-~fEIvI~Taa~~~YA~~vl~~LDp 191 (278)
.+..|||+.+||+.+.+ ...++|.|++...|++.+++.+..
T Consensus 68 ~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~~ 109 (214)
T TIGR03333 68 TAEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGIVE 109 (214)
T ss_pred cCcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhhCC
Confidence 36799999999999996 599999999999999999998854
No 108
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=80.27 E-value=1.1 Score=39.08 Aligned_cols=52 Identities=15% Similarity=0.206 Sum_probs=44.9
Q ss_pred EEeCcCHHHHHHHHh-hcceEEEEcCCchHHHHHHHHHhCCC--CcccEEEecCC
Q 044274 152 VLKRPGVDAFLDAIS-KKYEVVVFTAGLKEYASLLLNRLDRN--GVISHRLYRDS 203 (278)
Q Consensus 152 v~~RP~l~eFL~~l~-~~fEIvI~Taa~~~YA~~vl~~LDp~--~~f~~~l~R~~ 203 (278)
....||+.++|+.+. +.+.+.|-|++...++..+++.++-. .+|...+..++
T Consensus 86 ~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~l~~~~~f~~i~~~~~ 140 (220)
T TIGR03351 86 PVALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLGWTVGDDVDAVVCPSD 140 (220)
T ss_pred CccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHhhhhhhccCCEEEcCCc
Confidence 368899999999997 57999999999999999999998766 67887776654
No 109
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=80.15 E-value=4.4 Score=35.19 Aligned_cols=16 Identities=19% Similarity=0.339 Sum_probs=13.2
Q ss_pred eEEEEeCCCceeeccC
Q 044274 113 KTIFLDLDETLIHSKP 128 (278)
Q Consensus 113 ktLVLDLDeTLIhs~~ 128 (278)
+++++|+||||+.+..
T Consensus 2 k~iiFD~DGTL~ds~~ 17 (220)
T TIGR03351 2 SLVVLDMAGTTVDEDG 17 (220)
T ss_pred cEEEEecCCCeeccCc
Confidence 5789999999998653
No 110
>PLN02580 trehalose-phosphatase
Probab=79.89 E-value=3.2 Score=40.68 Aligned_cols=60 Identities=20% Similarity=0.297 Sum_probs=47.3
Q ss_pred CCCeEEEEeCCCceeeccCCCCCCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHhhcceEEEEcCCchHHHHHHHHH
Q 044274 110 PDKKTIFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAISKKYEVVVFTAGLKEYASLLLNR 188 (278)
Q Consensus 110 ~~KktLVLDLDeTLIhs~~~~~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~~~fEIvI~Taa~~~YA~~vl~~ 188 (278)
.++..|+||.||||.-....|.. +..=|.+.+-|+.|++.+.++|-|--...-++.++..
T Consensus 117 ~k~~~LfLDyDGTLaPIv~~Pd~-------------------A~~s~~~~~aL~~La~~~~VAIVSGR~~~~L~~~l~~ 176 (384)
T PLN02580 117 GKKIALFLDYDGTLSPIVDDPDR-------------------ALMSDAMRSAVKNVAKYFPTAIISGRSRDKVYELVGL 176 (384)
T ss_pred cCCeEEEEecCCccCCCCCCccc-------------------ccCCHHHHHHHHHHhhCCCEEEEeCCCHHHHHHHhCC
Confidence 46889999999999866544321 1345889999999999999999998888888877764
No 111
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=79.79 E-value=2.3 Score=35.96 Aligned_cols=50 Identities=22% Similarity=0.265 Sum_probs=42.5
Q ss_pred EeCcCHHHHHHHHhhcceEEEEcCCchHHHHHHHHHhCCCCcccEEEecCCc
Q 044274 153 LKRPGVDAFLDAISKKYEVVVFTAGLKEYASLLLNRLDRNGVISHRLYRDSC 204 (278)
Q Consensus 153 ~~RP~l~eFL~~l~~~fEIvI~Taa~~~YA~~vl~~LDp~~~f~~~l~R~~c 204 (278)
...||+.++|+.|. +.++|.|++...++..+++.+.-..+|..++..++.
T Consensus 84 ~~~~g~~~~L~~L~--~~~~i~Tn~~~~~~~~~l~~~gl~~~fd~i~~~~~~ 133 (184)
T TIGR01993 84 KPDPELRNLLLRLP--GRKIIFTNGDRAHARRALNRLGIEDCFDGIFCFDTA 133 (184)
T ss_pred CCCHHHHHHHHhCC--CCEEEEeCCCHHHHHHHHHHcCcHhhhCeEEEeecc
Confidence 35789999999997 689999999999999999998766688888776543
No 112
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=79.56 E-value=3.6 Score=38.43 Aligned_cols=54 Identities=20% Similarity=0.313 Sum_probs=38.8
Q ss_pred CCeEEEEeCCCceeeccCCCCCCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHhhc-ceEEEEcCCchHHHHHHHHHh
Q 044274 111 DKKTIFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAISKK-YEVVVFTAGLKEYASLLLNRL 189 (278)
Q Consensus 111 ~KktLVLDLDeTLIhs~~~~~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~~~-fEIvI~Taa~~~YA~~vl~~L 189 (278)
...++++||||||++-... =||..+||+.+.+. =.+++-|++...-.+.+.++|
T Consensus 7 ~y~~~l~DlDGvl~~G~~~-------------------------ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L 61 (269)
T COG0647 7 KYDGFLFDLDGVLYRGNEA-------------------------IPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARL 61 (269)
T ss_pred hcCEEEEcCcCceEeCCcc-------------------------CchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 4567899999999976432 48899999999865 777777887654444444444
No 113
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=79.48 E-value=1.1 Score=38.82 Aligned_cols=16 Identities=56% Similarity=0.912 Sum_probs=13.9
Q ss_pred eEEEEeCCCceeeccC
Q 044274 113 KTIFLDLDETLIHSKP 128 (278)
Q Consensus 113 ktLVLDLDeTLIhs~~ 128 (278)
+++++|+||||+.+..
T Consensus 3 ~~viFDlDGTL~ds~~ 18 (221)
T TIGR02253 3 KAIFFDLDDTLIDTSG 18 (221)
T ss_pred eEEEEeCCCCCcCCCC
Confidence 5789999999999864
No 114
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=79.16 E-value=1.1 Score=38.09 Aligned_cols=14 Identities=43% Similarity=0.622 Sum_probs=12.4
Q ss_pred EEEEeCCCceeecc
Q 044274 114 TIFLDLDETLIHSK 127 (278)
Q Consensus 114 tLVLDLDeTLIhs~ 127 (278)
++++||||||+.+.
T Consensus 2 ~viFDlDGTL~ds~ 15 (184)
T TIGR01993 2 VWFFDLDNTLYPHS 15 (184)
T ss_pred eEEEeCCCCCCCCc
Confidence 58999999999875
No 115
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=79.13 E-value=1.2 Score=38.14 Aligned_cols=52 Identities=12% Similarity=-0.029 Sum_probs=40.4
Q ss_pred EeCcCHHHHHHHHhh-cceEEEEcCCchHHHHHHHHHhCCCCcccEEEecCCcc
Q 044274 153 LKRPGVDAFLDAISK-KYEVVVFTAGLKEYASLLLNRLDRNGVISHRLYRDSCK 205 (278)
Q Consensus 153 ~~RP~l~eFL~~l~~-~fEIvI~Taa~~~YA~~vl~~LDp~~~f~~~l~R~~c~ 205 (278)
..-|++.++|+.|.+ .+.++|.|++... +..+++.+.-..+|..++..+++.
T Consensus 105 ~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~-~~~~l~~~~l~~~fd~i~~s~~~~ 157 (203)
T TIGR02252 105 QVYPDAIKLLKDLRERGLILGVISNFDSR-LRGLLEALGLLEYFDFVVTSYEVG 157 (203)
T ss_pred eeCcCHHHHHHHHHHCCCEEEEEeCCchh-HHHHHHHCCcHHhcceEEeecccC
Confidence 467999999999986 5999999998765 467777776656788777665543
No 116
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=79.01 E-value=1.1 Score=39.09 Aligned_cols=16 Identities=44% Similarity=0.727 Sum_probs=14.0
Q ss_pred CeEEEEeCCCceeecc
Q 044274 112 KKTIFLDLDETLIHSK 127 (278)
Q Consensus 112 KktLVLDLDeTLIhs~ 127 (278)
.+.+++|+||||+++.
T Consensus 3 ~~~viFD~DGTL~ds~ 18 (214)
T PRK13288 3 INTVLFDLDGTLINTN 18 (214)
T ss_pred ccEEEEeCCCcCccCH
Confidence 4689999999999975
No 117
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=78.94 E-value=5.7 Score=34.71 Aligned_cols=54 Identities=13% Similarity=0.068 Sum_probs=46.3
Q ss_pred EEeCcCHHHHHHHHh-hcceEEEEcCCchHHHHHHHHHhCCCCcccEEEecCCcc
Q 044274 152 VLKRPGVDAFLDAIS-KKYEVVVFTAGLKEYASLLLNRLDRNGVISHRLYRDSCK 205 (278)
Q Consensus 152 v~~RP~l~eFL~~l~-~~fEIvI~Taa~~~YA~~vl~~LDp~~~f~~~l~R~~c~ 205 (278)
+..-||+.++|+.+. +.+.++|.|++...+++.+++.+.-.++|...+..+...
T Consensus 91 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~ 145 (222)
T PRK10826 91 RPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMFDLRDYFDALASAEKLP 145 (222)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhCcchhcccEEEEcccCC
Confidence 456799999999998 469999999999999999999988777888888776543
No 118
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=78.69 E-value=1.1 Score=37.71 Aligned_cols=52 Identities=21% Similarity=0.283 Sum_probs=42.1
Q ss_pred EEeCcCHHHHHHHHhh-cceEEEEcCCchHHHHHHHHHhCCCCcccEEEecCCcc
Q 044274 152 VLKRPGVDAFLDAISK-KYEVVVFTAGLKEYASLLLNRLDRNGVISHRLYRDSCK 205 (278)
Q Consensus 152 v~~RP~l~eFL~~l~~-~fEIvI~Taa~~~YA~~vl~~LDp~~~f~~~l~R~~c~ 205 (278)
+...||+.++|+.+.+ .+.++|-|++ .+++.+++.+.-..+|..++..+++.
T Consensus 87 ~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l~~~~l~~~f~~v~~~~~~~ 139 (185)
T TIGR02009 87 AEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRILAKLGLTDYFDAIVDADEVK 139 (185)
T ss_pred CCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHHHHcChHHHCCEeeehhhCC
Confidence 5689999999999985 5888888887 78889998877666788887765543
No 119
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=78.58 E-value=4.1 Score=39.91 Aligned_cols=55 Identities=11% Similarity=0.174 Sum_probs=48.5
Q ss_pred EEeCcCHHHHHHHHh-hcceEEEEcCCchHHHHHHHHHhCCCCcccEEEecCCccc
Q 044274 152 VLKRPGVDAFLDAIS-KKYEVVVFTAGLKEYASLLLNRLDRNGVISHRLYRDSCKQ 206 (278)
Q Consensus 152 v~~RP~l~eFL~~l~-~~fEIvI~Taa~~~YA~~vl~~LDp~~~f~~~l~R~~c~~ 206 (278)
+...||+.+||+.|. +.+.+.|-|++...+++.+++.+.-..+|..++..+++..
T Consensus 215 ~~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~lgL~~yFd~Iv~sddv~~ 270 (381)
T PLN02575 215 YRLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSIGIRGFFSVIVAAEDVYR 270 (381)
T ss_pred CCcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCHHHceEEEecCcCCC
Confidence 346799999999997 4699999999999999999999987789999998887753
No 120
>PRK11590 hypothetical protein; Provisional
Probab=78.55 E-value=1.2 Score=39.20 Aligned_cols=39 Identities=15% Similarity=0.073 Sum_probs=34.1
Q ss_pred EEeCcCHHHHH-HHHh-hcceEEEEcCCchHHHHHHHHHhC
Q 044274 152 VLKRPGVDAFL-DAIS-KKYEVVVFTAGLKEYASLLLNRLD 190 (278)
Q Consensus 152 v~~RP~l~eFL-~~l~-~~fEIvI~Taa~~~YA~~vl~~LD 190 (278)
+..+|++.+.| +.+. ..+.++|-|++...|+.+++..+.
T Consensus 94 ~~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~l~ 134 (211)
T PRK11590 94 VTAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFDTP 134 (211)
T ss_pred CcCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHcc
Confidence 35689999999 5677 589999999999999999999865
No 121
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=77.87 E-value=6.3 Score=34.14 Aligned_cols=47 Identities=17% Similarity=0.443 Sum_probs=39.8
Q ss_pred EEeCcCHHHHHHHHhh-cceEEEEcCCchHHHHHHHHHhCCCCcccEE
Q 044274 152 VLKRPGVDAFLDAISK-KYEVVVFTAGLKEYASLLLNRLDRNGVISHR 198 (278)
Q Consensus 152 v~~RP~l~eFL~~l~~-~fEIvI~Taa~~~YA~~vl~~LDp~~~f~~~ 198 (278)
+..+||+.+||+.+.+ .+.++|-|++...++..+++.+.-..+|...
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~i~~~~~~~ 131 (219)
T TIGR00338 84 LPLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLDAAFANR 131 (219)
T ss_pred CCcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEeeE
Confidence 4579999999999996 6999999999999999999998755555443
No 122
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=77.83 E-value=1.1 Score=39.72 Aligned_cols=54 Identities=17% Similarity=0.087 Sum_probs=44.5
Q ss_pred EEeCcCHHHHHHHHhh-cceEEEEcCCchHHHHHHHHHhCCCCcccEEEecCCcc
Q 044274 152 VLKRPGVDAFLDAISK-KYEVVVFTAGLKEYASLLLNRLDRNGVISHRLYRDSCK 205 (278)
Q Consensus 152 v~~RP~l~eFL~~l~~-~fEIvI~Taa~~~YA~~vl~~LDp~~~f~~~l~R~~c~ 205 (278)
+...||+.++|+.|.+ .+.+.|-|++...++..+++.++-..+|......+++.
T Consensus 94 ~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~ 148 (229)
T PRK13226 94 SQLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQLGWEQRCAVLIGGDTLA 148 (229)
T ss_pred CeeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCchhcccEEEecCcCC
Confidence 5679999999999985 58999999999999999999887666777766666543
No 123
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=77.75 E-value=10 Score=32.66 Aligned_cols=72 Identities=13% Similarity=0.059 Sum_probs=45.7
Q ss_pred CeEEEEeCCCceeeccCCCCCCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHhhcceEEEEcCCchHHHHHHHHHhCC
Q 044274 112 KKTIFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAISKKYEVVVFTAGLKEYASLLLNRLDR 191 (278)
Q Consensus 112 KktLVLDLDeTLIhs~~~~~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~~~fEIvI~Taa~~~YA~~vl~~LDp 191 (278)
=+++|+|.||+|-.-+.. ...+|..... +..|-+.--.+-. .+.+.+.|-|+....++..+++.+.-
T Consensus 7 i~~~v~d~dGv~tdg~~~-----------~~~~g~~~~~-~~~~D~~~~~~L~-~~Gi~laIiT~k~~~~~~~~l~~lgi 73 (169)
T TIGR02726 7 IKLVILDVDGVMTDGRIV-----------INDEGIESRN-FDIKDGMGVIVLQ-LCGIDVAIITSKKSGAVRHRAEELKI 73 (169)
T ss_pred CeEEEEeCceeeECCeEE-----------EcCCCcEEEE-EecchHHHHHHHH-HCCCEEEEEECCCcHHHHHHHHHCCC
Confidence 579999999999765321 1112222222 2244444322211 35799999999999999999999976
Q ss_pred CCccc
Q 044274 192 NGVIS 196 (278)
Q Consensus 192 ~~~f~ 196 (278)
..+|.
T Consensus 74 ~~~f~ 78 (169)
T TIGR02726 74 KRFHE 78 (169)
T ss_pred cEEEe
Confidence 55443
No 124
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=77.53 E-value=3.2 Score=34.73 Aligned_cols=15 Identities=20% Similarity=0.638 Sum_probs=13.2
Q ss_pred eEEEEeCCCceeecc
Q 044274 113 KTIFLDLDETLIHSK 127 (278)
Q Consensus 113 ktLVLDLDeTLIhs~ 127 (278)
+++++|+||||+.+.
T Consensus 2 ~~iiFD~DGTL~ds~ 16 (185)
T TIGR02009 2 KAVIFDMDGVIVDTA 16 (185)
T ss_pred CeEEEcCCCcccCCh
Confidence 578999999999875
No 125
>PLN03017 trehalose-phosphatase
Probab=77.51 E-value=5.3 Score=38.97 Aligned_cols=59 Identities=17% Similarity=0.239 Sum_probs=41.4
Q ss_pred CCCeEEEEeCCCceeeccCCCCCCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHhhcceEEEEcCCchHHHHHHHH
Q 044274 110 PDKKTIFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAISKKYEVVVFTAGLKEYASLLLN 187 (278)
Q Consensus 110 ~~KktLVLDLDeTLIhs~~~~~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~~~fEIvI~Taa~~~YA~~vl~ 187 (278)
.++..|+||+||||+-....+.. ...=|.+.+-|+.|.+.+.++|-|--...-+..+++
T Consensus 109 ~k~~llflD~DGTL~Piv~~p~~-------------------a~i~~~~~~aL~~La~~~~vaIvSGR~~~~l~~~~~ 167 (366)
T PLN03017 109 GKQIVMFLDYDGTLSPIVDDPDK-------------------AFMSSKMRRTVKKLAKCFPTAIVTGRCIDKVYNFVK 167 (366)
T ss_pred CCCeEEEEecCCcCcCCcCCccc-------------------ccCCHHHHHHHHHHhcCCcEEEEeCCCHHHHHHhhc
Confidence 36788889999999944332210 013477788899999888888888777777666644
No 126
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=77.07 E-value=1.4 Score=40.03 Aligned_cols=54 Identities=17% Similarity=0.180 Sum_probs=44.1
Q ss_pred EEeCcCHHHHHHHHhh-cceEEEEcCCchHHHHHHHHHhCCCCc-ccEEEecCCcc
Q 044274 152 VLKRPGVDAFLDAISK-KYEVVVFTAGLKEYASLLLNRLDRNGV-ISHRLYRDSCK 205 (278)
Q Consensus 152 v~~RP~l~eFL~~l~~-~fEIvI~Taa~~~YA~~vl~~LDp~~~-f~~~l~R~~c~ 205 (278)
+..-||+.++|+.|.+ .+.++|-|++....+..+++.+.-.++ +..++..++..
T Consensus 100 ~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~~~l~~~~~d~i~~~~~~~ 155 (267)
T PRK13478 100 ATPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPLAAAQGYRPDHVVTTDDVP 155 (267)
T ss_pred CCCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHhhcCCCceEEEcCCcCC
Confidence 4567999999999974 699999999999999999998776664 46777666643
No 127
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=77.06 E-value=5.5 Score=35.59 Aligned_cols=54 Identities=13% Similarity=0.094 Sum_probs=45.1
Q ss_pred EEeCcCHHHHHHHHhh-cceEEEEcCCchHHHHHHHHHhCCCCcc-cEEEecCCcc
Q 044274 152 VLKRPGVDAFLDAISK-KYEVVVFTAGLKEYASLLLNRLDRNGVI-SHRLYRDSCK 205 (278)
Q Consensus 152 v~~RP~l~eFL~~l~~-~fEIvI~Taa~~~YA~~vl~~LDp~~~f-~~~l~R~~c~ 205 (278)
+..-||+.++|+.|.+ .+.+.|-|++...+++.+++.+.-.++| ..++..++..
T Consensus 98 ~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~gl~~~f~d~ii~~~~~~ 153 (253)
T TIGR01422 98 SSPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEAALQGYRPDYNVTTDDVP 153 (253)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHHHhcCCCCceEEccccCC
Confidence 4568999999999985 5999999999999999999998877764 7777766543
No 128
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=76.31 E-value=1.4 Score=40.54 Aligned_cols=54 Identities=17% Similarity=0.243 Sum_probs=45.0
Q ss_pred EEeCcCHHHHHHHHh-hcceEEEEcCCchHHHHHHHHHhCCCCcccEEEecCCcc
Q 044274 152 VLKRPGVDAFLDAIS-KKYEVVVFTAGLKEYASLLLNRLDRNGVISHRLYRDSCK 205 (278)
Q Consensus 152 v~~RP~l~eFL~~l~-~~fEIvI~Taa~~~YA~~vl~~LDp~~~f~~~l~R~~c~ 205 (278)
+...||+.++|+.+. +.+.++|.|++...++..+++.++-..+|...++.+.+.
T Consensus 100 ~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~~i~~~f~~i~~~d~~~ 154 (272)
T PRK13223 100 TVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQMKIGRYFRWIIGGDTLP 154 (272)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHcCcHhhCeEEEecCCCC
Confidence 456899999999997 469999999999999999999887666787777666543
No 129
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=76.28 E-value=1.6 Score=39.18 Aligned_cols=15 Identities=13% Similarity=0.260 Sum_probs=13.4
Q ss_pred eEEEEeCCCceeecc
Q 044274 113 KTIFLDLDETLIHSK 127 (278)
Q Consensus 113 ktLVLDLDeTLIhs~ 127 (278)
+++++|+||||+.+.
T Consensus 3 k~viFD~DGTLiDs~ 17 (253)
T TIGR01422 3 EAVIFDWAGTTVDFG 17 (253)
T ss_pred eEEEEeCCCCeecCC
Confidence 589999999999974
No 130
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=76.16 E-value=1.4 Score=38.91 Aligned_cols=53 Identities=21% Similarity=0.238 Sum_probs=45.9
Q ss_pred EEeCcCHHHHHHHHh-hcceEEEEcCCchHHHHHHHHHhCCCCcccEEEecCCc
Q 044274 152 VLKRPGVDAFLDAIS-KKYEVVVFTAGLKEYASLLLNRLDRNGVISHRLYRDSC 204 (278)
Q Consensus 152 v~~RP~l~eFL~~l~-~~fEIvI~Taa~~~YA~~vl~~LDp~~~f~~~l~R~~c 204 (278)
...=||+.+.|..+. ..|.+.|-|+.....++.+++.++-..+|.....-+.+
T Consensus 88 ~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~gl~~~F~~i~g~~~~ 141 (220)
T COG0546 88 SRLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKALGLADYFDVIVGGDDV 141 (220)
T ss_pred CccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHhCCccccceEEcCCCC
Confidence 356899999999999 57899999999999999999999988888888773333
No 131
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=75.65 E-value=1.4 Score=39.69 Aligned_cols=16 Identities=31% Similarity=0.536 Sum_probs=14.0
Q ss_pred CeEEEEeCCCceeecc
Q 044274 112 KKTIFLDLDETLIHSK 127 (278)
Q Consensus 112 KktLVLDLDeTLIhs~ 127 (278)
-+.++||+||||+.+.
T Consensus 22 ~k~viFDlDGTLiDs~ 37 (248)
T PLN02770 22 LEAVLFDVDGTLCDSD 37 (248)
T ss_pred cCEEEEcCCCccCcCH
Confidence 3689999999999875
No 132
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=74.78 E-value=1.5 Score=39.21 Aligned_cols=47 Identities=15% Similarity=0.135 Sum_probs=33.6
Q ss_pred EeCcCHHHHHHHHhhcceEEEEcCCchHHHHHHHHHhCCCCcccEEEecCCc
Q 044274 153 LKRPGVDAFLDAISKKYEVVVFTAGLKEYASLLLNRLDRNGVISHRLYRDSC 204 (278)
Q Consensus 153 ~~RP~l~eFL~~l~~~fEIvI~Taa~~~YA~~vl~~LDp~~~f~~~l~R~~c 204 (278)
..-|++.++|+.|.+.|.++|-|++... ++...-..+|..++..+..
T Consensus 113 ~~~~gv~~~L~~L~~~~~l~i~Tn~~~~-----~~~~gl~~~fd~i~~~~~~ 159 (238)
T PRK10748 113 DVPQATHDTLKQLAKKWPLVAITNGNAQ-----PELFGLGDYFEFVLRAGPH 159 (238)
T ss_pred CCCccHHHHHHHHHcCCCEEEEECCCch-----HHHCCcHHhhceeEecccC
Confidence 3448999999999988999999998765 2333333467777655443
No 133
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=74.69 E-value=5.2 Score=39.53 Aligned_cols=53 Identities=15% Similarity=0.268 Sum_probs=46.0
Q ss_pred EEeCcCHHHHHHHHh-hcceEEEEcCCchHHHHHHHHHhCCCCcccEEEecCCc
Q 044274 152 VLKRPGVDAFLDAIS-KKYEVVVFTAGLKEYASLLLNRLDRNGVISHRLYRDSC 204 (278)
Q Consensus 152 v~~RP~l~eFL~~l~-~~fEIvI~Taa~~~YA~~vl~~LDp~~~f~~~l~R~~c 204 (278)
+...||+.++|+++. +.+.+.|-|++..+++..+++.++-..+|...+..++.
T Consensus 329 ~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~~l~~~f~~i~~~d~v 382 (459)
T PRK06698 329 GALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYYDLDQWVTETFSIEQI 382 (459)
T ss_pred CCcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHCCcHhhcceeEecCCC
Confidence 456899999999997 56999999999999999999998877788888776654
No 134
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=74.32 E-value=1.4 Score=36.02 Aligned_cols=52 Identities=15% Similarity=0.137 Sum_probs=41.4
Q ss_pred EEeCcCHHHHHHHHh-hcceEEEEcCCchHHHHHHHHHhCCCCcccEEEecCCc
Q 044274 152 VLKRPGVDAFLDAIS-KKYEVVVFTAGLKEYASLLLNRLDRNGVISHRLYRDSC 204 (278)
Q Consensus 152 v~~RP~l~eFL~~l~-~~fEIvI~Taa~~~YA~~vl~~LDp~~~f~~~l~R~~c 204 (278)
....||+.++|+.+. +.+.+.|.|++....+..+++.+ -..+|...+..+++
T Consensus 63 ~~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~-l~~~f~~i~~~~~~ 115 (154)
T TIGR01549 63 EAYIRGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKH-LGDYFDLILGSDEF 115 (154)
T ss_pred heeccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHH-HHhcCcEEEecCCC
Confidence 344699999999996 56999999999999999999985 33467666666654
No 135
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=73.75 E-value=2.1 Score=39.27 Aligned_cols=18 Identities=6% Similarity=0.163 Sum_probs=15.7
Q ss_pred CCCeEEEEeCCCceeecc
Q 044274 110 PDKKTIFLDLDETLIHSK 127 (278)
Q Consensus 110 ~~KktLVLDLDeTLIhs~ 127 (278)
.+-+.++||+||||+.+.
T Consensus 22 ~~~k~vIFDlDGTLvDS~ 39 (260)
T PLN03243 22 CGWLGVVLEWEGVIVEDD 39 (260)
T ss_pred CCceEEEEeCCCceeCCc
Confidence 367889999999999984
No 136
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=73.68 E-value=8 Score=31.44 Aligned_cols=14 Identities=43% Similarity=0.769 Sum_probs=12.2
Q ss_pred EEEEeCCCceeecc
Q 044274 114 TIFLDLDETLIHSK 127 (278)
Q Consensus 114 tLVLDLDeTLIhs~ 127 (278)
++++|+||||+.+.
T Consensus 1 ~iifD~DGTL~d~~ 14 (154)
T TIGR01549 1 AILFDIDGTLVDSS 14 (154)
T ss_pred CeEecCCCcccccH
Confidence 47899999999985
No 137
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=73.67 E-value=12 Score=34.44 Aligned_cols=58 Identities=22% Similarity=0.252 Sum_probs=39.1
Q ss_pred CCeEEEEeCCCceeeccCCCCCCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHh-hcceEEEEcCCchHHHHHHHHHh
Q 044274 111 DKKTIFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAIS-KKYEVVVFTAGLKEYASLLLNRL 189 (278)
Q Consensus 111 ~KktLVLDLDeTLIhs~~~~~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~-~~fEIvI~Taa~~~YA~~vl~~L 189 (278)
-.+++++|||+|||-......+ -. ..+..+. ..|+||.-|+-+..-...+-+.|
T Consensus 6 ~~~lIFtDlD~TLl~~~ye~~p------------------------A~-pv~~el~d~G~~Vi~~SSKT~aE~~~l~~~l 60 (274)
T COG3769 6 MPLLIFTDLDGTLLPHSYEWQP------------------------AA-PVLLELKDAGVPVILCSSKTRAEMLYLQKSL 60 (274)
T ss_pred cceEEEEcccCcccCCCCCCCc------------------------cc-hHHHHHHHcCCeEEEeccchHHHHHHHHHhc
Confidence 3467888999999984443321 11 2233343 67999999888776666777788
Q ss_pred CCCC
Q 044274 190 DRNG 193 (278)
Q Consensus 190 Dp~~ 193 (278)
+.++
T Consensus 61 ~v~~ 64 (274)
T COG3769 61 GVQG 64 (274)
T ss_pred CCCC
Confidence 8775
No 138
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=73.46 E-value=7.8 Score=35.56 Aligned_cols=16 Identities=38% Similarity=0.638 Sum_probs=14.0
Q ss_pred CeEEEEeCCCceeecc
Q 044274 112 KKTIFLDLDETLIHSK 127 (278)
Q Consensus 112 KktLVLDLDeTLIhs~ 127 (278)
.+.+++|+||||+.+.
T Consensus 13 ~k~viFDlDGTL~Ds~ 28 (272)
T PRK13223 13 PRLVMFDLDGTLVDSV 28 (272)
T ss_pred CCEEEEcCCCccccCH
Confidence 4699999999999984
No 139
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=73.22 E-value=1.8 Score=37.04 Aligned_cols=15 Identities=27% Similarity=0.426 Sum_probs=13.2
Q ss_pred eEEEEeCCCceeecc
Q 044274 113 KTIFLDLDETLIHSK 127 (278)
Q Consensus 113 ktLVLDLDeTLIhs~ 127 (278)
+.++||+||||+.+.
T Consensus 2 k~viFD~dgTLiD~~ 16 (198)
T TIGR01428 2 KALVFDVYGTLFDVH 16 (198)
T ss_pred cEEEEeCCCcCccHH
Confidence 479999999999875
No 140
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=73.12 E-value=2 Score=38.26 Aligned_cols=54 Identities=13% Similarity=0.156 Sum_probs=45.3
Q ss_pred EEeCcCHHHHHHHHhh-cceEEEEcCCchHHHHHHHHHhCCCCcccEEEecCCcc
Q 044274 152 VLKRPGVDAFLDAISK-KYEVVVFTAGLKEYASLLLNRLDRNGVISHRLYRDSCK 205 (278)
Q Consensus 152 v~~RP~l~eFL~~l~~-~fEIvI~Taa~~~YA~~vl~~LDp~~~f~~~l~R~~c~ 205 (278)
+...||+.++|+.+.+ .+.+.|-|++...++...++.+.-..+|..++..++..
T Consensus 92 ~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~~l~~~fd~iv~s~~~~ 146 (224)
T PRK14988 92 AVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHTGLDAHLDLLLSTHTFG 146 (224)
T ss_pred CCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHCCcHHHCCEEEEeeeCC
Confidence 4578999999999996 69999999999999999998876656888887766543
No 141
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=73.10 E-value=1.5 Score=36.68 Aligned_cols=48 Identities=17% Similarity=0.235 Sum_probs=36.4
Q ss_pred EeCcCHHHHHHHHh-hcceEEEEcCCchHHHHHHHHHhCCCCcccEEEecC
Q 044274 153 LKRPGVDAFLDAIS-KKYEVVVFTAGLKEYASLLLNRLDRNGVISHRLYRD 202 (278)
Q Consensus 153 ~~RP~l~eFL~~l~-~~fEIvI~Taa~~~YA~~vl~~LDp~~~f~~~l~R~ 202 (278)
...||+.++|+.|. ..+.+.|-|++. .+..+++.+.-..+|...+..+
T Consensus 87 ~~~pg~~~~L~~L~~~g~~~~i~s~~~--~~~~~l~~~~l~~~f~~~~~~~ 135 (185)
T TIGR01990 87 DVLPGIKNLLDDLKKNNIKIALASASK--NAPTVLEKLGLIDYFDAIVDPA 135 (185)
T ss_pred ccCccHHHHHHHHHHCCCeEEEEeCCc--cHHHHHHhcCcHhhCcEEEehh
Confidence 46799999999997 558898888753 3567788777666787776544
No 142
>PRK09449 dUMP phosphatase; Provisional
Probab=72.93 E-value=1.7 Score=37.86 Aligned_cols=14 Identities=50% Similarity=0.655 Sum_probs=12.4
Q ss_pred eEEEEeCCCceeec
Q 044274 113 KTIFLDLDETLIHS 126 (278)
Q Consensus 113 ktLVLDLDeTLIhs 126 (278)
+++++||||||++.
T Consensus 4 k~iiFDlDGTLid~ 17 (224)
T PRK09449 4 DWILFDADETLFHF 17 (224)
T ss_pred cEEEEcCCCchhcc
Confidence 58999999999973
No 143
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=72.88 E-value=10 Score=33.55 Aligned_cols=16 Identities=38% Similarity=0.706 Sum_probs=13.9
Q ss_pred CeEEEEeCCCceeecc
Q 044274 112 KKTIFLDLDETLIHSK 127 (278)
Q Consensus 112 KktLVLDLDeTLIhs~ 127 (278)
.++++||+||||+.+.
T Consensus 12 ~k~viFD~DGTL~Ds~ 27 (229)
T PRK13226 12 PRAVLFDLDGTLLDSA 27 (229)
T ss_pred CCEEEEcCcCccccCH
Confidence 3689999999999985
No 144
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=72.54 E-value=2.3 Score=36.80 Aligned_cols=53 Identities=13% Similarity=0.045 Sum_probs=35.5
Q ss_pred EEeCcCHHHHHHHHhh-cceEEEEcCCchHH--HHHHHHHhCCCCcccEEEecCCc
Q 044274 152 VLKRPGVDAFLDAISK-KYEVVVFTAGLKEY--ASLLLNRLDRNGVISHRLYRDSC 204 (278)
Q Consensus 152 v~~RP~l~eFL~~l~~-~fEIvI~Taa~~~Y--A~~vl~~LDp~~~f~~~l~R~~c 204 (278)
+...|++.++|+.|.+ .+.++|.|++...+ +...+..++-..+|..++..+++
T Consensus 93 ~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~l~~~fd~v~~s~~~ 148 (211)
T TIGR02247 93 TKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPGDIMALFDAVVESCLE 148 (211)
T ss_pred cccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhhhhHhhCCEEEEeeec
Confidence 4578999999999985 69999999987654 22222222223367777755443
No 145
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=72.53 E-value=1.4 Score=37.96 Aligned_cols=13 Identities=38% Similarity=0.621 Sum_probs=11.5
Q ss_pred EEEeCCCceeecc
Q 044274 115 IFLDLDETLIHSK 127 (278)
Q Consensus 115 LVLDLDeTLIhs~ 127 (278)
+|+||||||+.+.
T Consensus 1 iiFDlDGTL~Ds~ 13 (205)
T TIGR01454 1 VVFDLDGVLVDSF 13 (205)
T ss_pred CeecCcCccccCH
Confidence 5899999999874
No 146
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=72.37 E-value=6 Score=35.12 Aligned_cols=17 Identities=41% Similarity=0.661 Sum_probs=14.4
Q ss_pred CCeEEEEeCCCceeecc
Q 044274 111 DKKTIFLDLDETLIHSK 127 (278)
Q Consensus 111 ~KktLVLDLDeTLIhs~ 127 (278)
.-+.++|||||||+.+.
T Consensus 9 ~~k~vIFDlDGTL~d~~ 25 (224)
T PRK14988 9 DVDTVLLDMDGTLLDLA 25 (224)
T ss_pred cCCEEEEcCCCCccchh
Confidence 45789999999999963
No 147
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=72.35 E-value=6 Score=37.13 Aligned_cols=85 Identities=20% Similarity=0.363 Sum_probs=50.3
Q ss_pred CCeEEEEeCCCceeeccCCC-----CCCCCc------eEEeeccCCceeeEEEEeCcCHHHHHHHHh-hcceEEEEcCCc
Q 044274 111 DKKTIFLDLDETLIHSKPDP-----PPERFD------FIVRPRIDGEVLNFYVLKRPGVDAFLDAIS-KKYEVVVFTAGL 178 (278)
Q Consensus 111 ~KktLVLDLDeTLIhs~~~~-----~~~~~D------f~v~~~~~~~~~~~~v~~RP~l~eFL~~l~-~~fEIvI~Taa~ 178 (278)
++-.+|||+|||++...... ....++ ..+. .+. ..-=|+.-+|++++. .-+.|++.|.=.
T Consensus 100 ~~dA~V~DIDET~LsN~pY~~~~~~g~e~~~~~~w~~~Wv~---~~~-----ApAlp~al~ly~~l~~~G~kIf~VSgR~ 171 (275)
T TIGR01680 100 EKDTFLFNIDGTALSNIPYYKKHGYGSEKFDSELYDEEFVN---KGE-----APALPETLKNYNKLVSLGFKIIFLSGRL 171 (275)
T ss_pred CCCEEEEECccccccCHHHHHHhcCCCCcCChhhhhHHHHh---ccc-----CCCChHHHHHHHHHHHCCCEEEEEeCCc
Confidence 68999999999999532110 001111 1110 000 112478899999997 568888888776
Q ss_pred hHHHHHHHHHhCCCCc--ccEEEecCC
Q 044274 179 KEYASLLLNRLDRNGV--ISHRLYRDS 203 (278)
Q Consensus 179 ~~YA~~vl~~LDp~~~--f~~~l~R~~ 203 (278)
+..-+.=++.|...|+ ..+.+.|+.
T Consensus 172 e~~r~aT~~NL~kaGy~~~~~LiLR~~ 198 (275)
T TIGR01680 172 KDKQAVTEANLKKAGYHTWEKLILKDP 198 (275)
T ss_pred hhHHHHHHHHHHHcCCCCcceeeecCC
Confidence 6555555666655663 245566643
No 148
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=72.14 E-value=2 Score=37.12 Aligned_cols=16 Identities=38% Similarity=0.752 Sum_probs=13.7
Q ss_pred eEEEEeCCCceeeccC
Q 044274 113 KTIFLDLDETLIHSKP 128 (278)
Q Consensus 113 ktLVLDLDeTLIhs~~ 128 (278)
+.+++|+||||+.+..
T Consensus 2 k~viFD~DGTL~d~~~ 17 (224)
T TIGR02254 2 KTLLFDLDDTILDFQA 17 (224)
T ss_pred CEEEEcCcCcccccch
Confidence 5799999999998754
No 149
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=72.10 E-value=2.3 Score=36.10 Aligned_cols=16 Identities=44% Similarity=0.486 Sum_probs=13.6
Q ss_pred CeEEEEeCCCceeecc
Q 044274 112 KKTIFLDLDETLIHSK 127 (278)
Q Consensus 112 KktLVLDLDeTLIhs~ 127 (278)
.+++|+|+||||+...
T Consensus 4 ~k~viFD~DGTLid~~ 19 (201)
T TIGR01491 4 IKLIIFDLDGTLTDVM 19 (201)
T ss_pred ceEEEEeCCCCCcCCc
Confidence 4689999999999854
No 150
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=71.59 E-value=2.2 Score=39.57 Aligned_cols=39 Identities=26% Similarity=0.300 Sum_probs=34.6
Q ss_pred EEeCcCHHHHHHHHhh-cceEEEEcCCchHHHHHHHHHhC
Q 044274 152 VLKRPGVDAFLDAISK-KYEVVVFTAGLKEYASLLLNRLD 190 (278)
Q Consensus 152 v~~RP~l~eFL~~l~~-~fEIvI~Taa~~~YA~~vl~~LD 190 (278)
+...||+.++|+.+.+ .+.++|-|++...++..+++.+.
T Consensus 143 ~~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~~ 182 (286)
T PLN02779 143 LPLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLL 182 (286)
T ss_pred CCchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhc
Confidence 4678999999999985 69999999999999999998763
No 151
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=71.43 E-value=2.1 Score=38.65 Aligned_cols=76 Identities=21% Similarity=0.338 Sum_probs=43.0
Q ss_pred CCCeEEEEeCCCceeeccCCC----------CCCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHhhc-ceEEEEcCCc
Q 044274 110 PDKKTIFLDLDETLIHSKPDP----------PPERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAISKK-YEVVVFTAGL 178 (278)
Q Consensus 110 ~~KktLVLDLDeTLIhs~~~~----------~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~~~-fEIvI~Taa~ 178 (278)
.+++.+|||||||++...... .+..++-.+ ..+.. ..=|+..+|++++.+. ++|++-|.=.
T Consensus 70 ~~~~avv~DIDeTvLsn~~y~~~~~~~~~~~~~~~w~~wv---~~~~~-----~aip~a~~l~~~~~~~G~~V~~iT~R~ 141 (229)
T PF03767_consen 70 DKPPAVVFDIDETVLSNSPYYAYLIFGGESFSPEDWDEWV---ASGKA-----PAIPGALELYNYARSRGVKVFFITGRP 141 (229)
T ss_dssp TSEEEEEEESBTTTEEHHHHHHHHHHHTHHH-CCHHHHHH---HCTGG-----EEETTHHHHHHHHHHTTEEEEEEEEEE
T ss_pred CCCcEEEEECCcccccCHHHHHHHhhccCCCChHHHHHHH---hcccC-----cccHHHHHHHHHHHHCCCeEEEEecCC
Confidence 378999999999999653210 000111000 01111 2348899999999965 7777776644
Q ss_pred hHHHHHHHHHhCCCC
Q 044274 179 KEYASLLLNRLDRNG 193 (278)
Q Consensus 179 ~~YA~~vl~~LDp~~ 193 (278)
+..-+.-++.|...|
T Consensus 142 ~~~r~~T~~nL~~~G 156 (229)
T PF03767_consen 142 ESQREATEKNLKKAG 156 (229)
T ss_dssp TTCHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHcC
Confidence 443444445554333
No 152
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=71.39 E-value=7.9 Score=40.65 Aligned_cols=61 Identities=18% Similarity=0.362 Sum_probs=42.9
Q ss_pred CCCeEEEEeCCCceeeccCCCCCCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHhh--cceEEEEcCCchHHHHHHHH
Q 044274 110 PDKKTIFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAISK--KYEVVVFTAGLKEYASLLLN 187 (278)
Q Consensus 110 ~~KktLVLDLDeTLIhs~~~~~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~~--~fEIvI~Taa~~~YA~~vl~ 187 (278)
.+++.|++|+||||+-....+.. ...-|.+.+.|+.|.+ ...|+|-|.-.....+.++.
T Consensus 490 ~~~rLi~~D~DGTL~~~~~~~~~-------------------~~~~~~~~~~L~~L~~d~g~~V~ivSGR~~~~l~~~~~ 550 (726)
T PRK14501 490 ASRRLLLLDYDGTLVPFAPDPEL-------------------AVPDKELRDLLRRLAADPNTDVAIISGRDRDTLERWFG 550 (726)
T ss_pred ccceEEEEecCccccCCCCCccc-------------------CCCCHHHHHHHHHHHcCCCCeEEEEeCCCHHHHHHHhC
Confidence 46789999999999965432210 0124677888999887 67778888877777777665
Q ss_pred Hh
Q 044274 188 RL 189 (278)
Q Consensus 188 ~L 189 (278)
.+
T Consensus 551 ~~ 552 (726)
T PRK14501 551 DL 552 (726)
T ss_pred CC
Confidence 44
No 153
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=71.38 E-value=2.1 Score=37.09 Aligned_cols=16 Identities=38% Similarity=0.592 Sum_probs=13.6
Q ss_pred CeEEEEeCCCceeecc
Q 044274 112 KKTIFLDLDETLIHSK 127 (278)
Q Consensus 112 KktLVLDLDeTLIhs~ 127 (278)
-+++++|+||||+++.
T Consensus 6 ~~~iiFD~DGTL~d~~ 21 (226)
T PRK13222 6 IRAVAFDLDGTLVDSA 21 (226)
T ss_pred CcEEEEcCCcccccCH
Confidence 4589999999999874
No 154
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=71.29 E-value=13 Score=34.08 Aligned_cols=58 Identities=14% Similarity=0.374 Sum_probs=48.3
Q ss_pred EEeCcCHHHHHHHHh---hcceEEEEcCCchHHHHHHHHHhCCCCcccEEEecCCccccCC
Q 044274 152 VLKRPGVDAFLDAIS---KKYEVVVFTAGLKEYASLLLNRLDRNGVISHRLYRDSCKQIDG 209 (278)
Q Consensus 152 v~~RP~l~eFL~~l~---~~fEIvI~Taa~~~YA~~vl~~LDp~~~f~~~l~R~~c~~~~g 209 (278)
+-.-||..+|++.+. ..+|++|-|-|..-|.+.+++.-.-...|+.++.-..+...+|
T Consensus 70 ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL~~~gl~~~f~~I~TNpa~~~~~G 130 (234)
T PF06888_consen 70 IPIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETILEHHGLRDCFSEIFTNPACFDADG 130 (234)
T ss_pred CCCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHHHhCCCccccceEEeCCceecCCc
Confidence 567899999999994 3899999999999999999998877677877776666665555
No 155
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=71.12 E-value=11 Score=32.32 Aligned_cols=14 Identities=21% Similarity=0.487 Sum_probs=12.4
Q ss_pred EEEEeCCCceeecc
Q 044274 114 TIFLDLDETLIHSK 127 (278)
Q Consensus 114 tLVLDLDeTLIhs~ 127 (278)
.|++|+||||+.+.
T Consensus 2 ~viFD~DGTLiDs~ 15 (197)
T TIGR01548 2 ALVLDMDGVMADVS 15 (197)
T ss_pred ceEEecCceEEech
Confidence 58999999999875
No 156
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=71.03 E-value=2.2 Score=37.37 Aligned_cols=17 Identities=29% Similarity=0.421 Sum_probs=14.4
Q ss_pred CCeEEEEeCCCceeecc
Q 044274 111 DKKTIFLDLDETLIHSK 127 (278)
Q Consensus 111 ~KktLVLDLDeTLIhs~ 127 (278)
.-+.|+||+||||+++.
T Consensus 6 ~~k~iiFD~DGTL~d~~ 22 (222)
T PRK10826 6 QILAAIFDMDGLLIDSE 22 (222)
T ss_pred cCcEEEEcCCCCCCcCH
Confidence 35789999999999874
No 157
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=70.91 E-value=6.6 Score=33.03 Aligned_cols=16 Identities=19% Similarity=0.517 Sum_probs=14.0
Q ss_pred CeEEEEeCCCceeecc
Q 044274 112 KKTIFLDLDETLIHSK 127 (278)
Q Consensus 112 KktLVLDLDeTLIhs~ 127 (278)
-+.+++|+||||+.+.
T Consensus 5 ~~~viFD~DGTLiDs~ 20 (188)
T PRK10725 5 YAGLIFDMDGTILDTE 20 (188)
T ss_pred ceEEEEcCCCcCccCH
Confidence 4689999999999974
No 158
>PLN02954 phosphoserine phosphatase
Probab=70.80 E-value=8.1 Score=33.60 Aligned_cols=41 Identities=12% Similarity=0.260 Sum_probs=35.8
Q ss_pred EEeCcCHHHHHHHHhh-cceEEEEcCCchHHHHHHHHHhCCC
Q 044274 152 VLKRPGVDAFLDAISK-KYEVVVFTAGLKEYASLLLNRLDRN 192 (278)
Q Consensus 152 v~~RP~l~eFL~~l~~-~fEIvI~Taa~~~YA~~vl~~LDp~ 192 (278)
...+||+.++|+.+.+ .+.++|-|++...+++.+++.+.-.
T Consensus 83 ~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~gi~ 124 (224)
T PLN02954 83 PRLSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAILGIP 124 (224)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHhCCC
Confidence 3478999999999975 5899999999999999999997643
No 159
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=70.53 E-value=2.1 Score=34.62 Aligned_cols=14 Identities=50% Similarity=0.933 Sum_probs=12.1
Q ss_pred EEEeCCCceeeccC
Q 044274 115 IFLDLDETLIHSKP 128 (278)
Q Consensus 115 LVLDLDeTLIhs~~ 128 (278)
|+||+||||+++..
T Consensus 1 iifD~dgtL~d~~~ 14 (176)
T PF13419_consen 1 IIFDLDGTLVDTDP 14 (176)
T ss_dssp EEEESBTTTEEHHH
T ss_pred cEEECCCCcEeCHH
Confidence 68999999998754
No 160
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=70.30 E-value=2.1 Score=35.69 Aligned_cols=47 Identities=11% Similarity=0.040 Sum_probs=38.0
Q ss_pred EEeCcCHHHHHHHHhhcceEEEEcCCchHHHHHHHHHhCCCCcccEEEecCCc
Q 044274 152 VLKRPGVDAFLDAISKKYEVVVFTAGLKEYASLLLNRLDRNGVISHRLYRDSC 204 (278)
Q Consensus 152 v~~RP~l~eFL~~l~~~fEIvI~Taa~~~YA~~vl~~LDp~~~f~~~l~R~~c 204 (278)
+...||+.++|+. ++|.|++...++..+++.+.-..+|..+++.+..
T Consensus 89 ~~~~~g~~~~L~~------~~i~Tn~~~~~~~~~l~~~~l~~~fd~v~~~~~~ 135 (175)
T TIGR01493 89 LPPWPDSAAALAR------VAILSNASHWAFDQFAQQAGLPWYFDRAFSVDTV 135 (175)
T ss_pred CCCCCchHHHHHH------HhhhhCCCHHHHHHHHHHCCCHHHHhhhccHhhc
Confidence 4478999999983 7899999999999999988766678777666643
No 161
>PTZ00445 p36-lilke protein; Provisional
Probab=70.24 E-value=4.8 Score=36.54 Aligned_cols=61 Identities=23% Similarity=0.194 Sum_probs=41.6
Q ss_pred CCCeEEEEeCCCceee--ccCCCCCCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHh-hcceEEEEcCCchHH
Q 044274 110 PDKKTIFLDLDETLIH--SKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAIS-KKYEVVVFTAGLKEY 181 (278)
Q Consensus 110 ~~KktLVLDLDeTLIh--s~~~~~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~-~~fEIvI~Taa~~~Y 181 (278)
.+-+.|++|||.|||- +.---.+. .| ...+.-..+|.+.++++.|. ..+.|+|-|=+.+.-
T Consensus 41 ~GIk~Va~D~DnTlI~~HsgG~~~~~-~~----------~~~~~~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~ 104 (219)
T PTZ00445 41 CGIKVIASDFDLTMITKHSGGYIDPD-ND----------DIRVLTSVTPDFKILGKRLKNSNIKISVVTFSDKEL 104 (219)
T ss_pred cCCeEEEecchhhhhhhhcccccCCC-cc----------hhhhhccCCHHHHHHHHHHHHCCCeEEEEEccchhh
Confidence 3778999999999995 32111110 01 01233357999999999998 579999988877644
No 162
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=69.77 E-value=1.8 Score=37.22 Aligned_cols=13 Identities=46% Similarity=0.807 Sum_probs=11.3
Q ss_pred EEEeCCCceeecc
Q 044274 115 IFLDLDETLIHSK 127 (278)
Q Consensus 115 LVLDLDeTLIhs~ 127 (278)
+|+|+||||+.+.
T Consensus 1 viFD~DGTL~Ds~ 13 (213)
T TIGR01449 1 VLFDLDGTLVDSA 13 (213)
T ss_pred CeecCCCccccCH
Confidence 5899999999864
No 163
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=69.42 E-value=2.4 Score=36.93 Aligned_cols=51 Identities=14% Similarity=0.120 Sum_probs=41.1
Q ss_pred EEeCcCHHHHHHHHhhcceEEEEcCCchHHHHHHHHHhCCCCccc-EEEecCCc
Q 044274 152 VLKRPGVDAFLDAISKKYEVVVFTAGLKEYASLLLNRLDRNGVIS-HRLYRDSC 204 (278)
Q Consensus 152 v~~RP~l~eFL~~l~~~fEIvI~Taa~~~YA~~vl~~LDp~~~f~-~~l~R~~c 204 (278)
+..-||+.++|+.+. +.++|.|++...+++.+++..+-..+|. ..+..++.
T Consensus 87 ~~~~~gv~~~L~~L~--~~~~ivTn~~~~~~~~~l~~~~l~~~F~~~v~~~~~~ 138 (221)
T PRK10563 87 LEPIAGANALLESIT--VPMCVVSNGPVSKMQHSLGKTGMLHYFPDKLFSGYDI 138 (221)
T ss_pred CCcCCCHHHHHHHcC--CCEEEEeCCcHHHHHHHHHhcChHHhCcceEeeHHhc
Confidence 456799999999994 8999999999999999998887766775 45555443
No 164
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=68.75 E-value=8.5 Score=32.82 Aligned_cols=46 Identities=17% Similarity=0.191 Sum_probs=39.3
Q ss_pred EeCcCHHHHHHHHhh-cceEEEEcCCchHHHHHHHHHhCCCCcccEE
Q 044274 153 LKRPGVDAFLDAISK-KYEVVVFTAGLKEYASLLLNRLDRNGVISHR 198 (278)
Q Consensus 153 ~~RP~l~eFL~~l~~-~fEIvI~Taa~~~YA~~vl~~LDp~~~f~~~ 198 (278)
..+|++.++|+.+.+ .+.++|-|++...+++.+++.+.-..+|...
T Consensus 87 ~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg~~~~~~~~ 133 (202)
T TIGR01490 87 ILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLARILGIDNAIGTR 133 (202)
T ss_pred hccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCcceEecc
Confidence 479999999999975 6999999999999999999988766655543
No 165
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=68.66 E-value=2.8 Score=35.95 Aligned_cols=13 Identities=31% Similarity=0.603 Sum_probs=11.4
Q ss_pred eEEEEeCCCceee
Q 044274 113 KTIFLDLDETLIH 125 (278)
Q Consensus 113 ktLVLDLDeTLIh 125 (278)
+.+|+|+||||+.
T Consensus 2 ~~v~FD~DGTL~~ 14 (205)
T PRK13582 2 EIVCLDLEGVLVP 14 (205)
T ss_pred eEEEEeCCCCChh
Confidence 4789999999994
No 166
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=67.39 E-value=2.7 Score=34.87 Aligned_cols=15 Identities=33% Similarity=0.682 Sum_probs=12.6
Q ss_pred EEEEeCCCceeeccC
Q 044274 114 TIFLDLDETLIHSKP 128 (278)
Q Consensus 114 tLVLDLDeTLIhs~~ 128 (278)
.+++||||||+.+..
T Consensus 1 ~vlFDlDgtLv~~~~ 15 (183)
T TIGR01509 1 AILFDLDGVLVDTSS 15 (183)
T ss_pred CeeeccCCceechHH
Confidence 378999999999843
No 167
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=66.86 E-value=3.4 Score=35.89 Aligned_cols=17 Identities=41% Similarity=0.729 Sum_probs=14.6
Q ss_pred CCeEEEEeCCCceeecc
Q 044274 111 DKKTIFLDLDETLIHSK 127 (278)
Q Consensus 111 ~KktLVLDLDeTLIhs~ 127 (278)
.++.+++|+||||+.+.
T Consensus 13 ~~k~iiFD~DGTL~~~~ 29 (219)
T TIGR00338 13 SKKLVVFDMDSTLINAE 29 (219)
T ss_pred cCCEEEEeCcccCCCch
Confidence 46799999999999874
No 168
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=66.64 E-value=11 Score=32.52 Aligned_cols=55 Identities=16% Similarity=0.201 Sum_probs=47.7
Q ss_pred EEeCcCHHHHHHHHhhcceEEEEcCCchHHHHHHHHHhCCCCcccEEEecCCccc
Q 044274 152 VLKRPGVDAFLDAISKKYEVVVFTAGLKEYASLLLNRLDRNGVISHRLYRDSCKQ 206 (278)
Q Consensus 152 v~~RP~l~eFL~~l~~~fEIvI~Taa~~~YA~~vl~~LDp~~~f~~~l~R~~c~~ 206 (278)
+..-|.+.++|+.+.+.|.++|.|.|...++...+..+.-..+|+.++..+....
T Consensus 98 ~~~~~~~~~~L~~l~~~~~l~ilTNg~~~~~~~~l~~~gl~~~Fd~v~~s~~~g~ 152 (229)
T COG1011 98 LPDYPEALEALKELGKKYKLGILTNGARPHQERKLRQLGLLDYFDAVFISEDVGV 152 (229)
T ss_pred CccChhHHHHHHHHHhhccEEEEeCCChHHHHHHHHHcCChhhhheEEEeccccc
Confidence 5677899999999998899999999999999999999885568999988777664
No 169
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=66.56 E-value=3.7 Score=34.28 Aligned_cols=17 Identities=24% Similarity=0.350 Sum_probs=14.2
Q ss_pred CeEEEEeCCCceeeccC
Q 044274 112 KKTIFLDLDETLIHSKP 128 (278)
Q Consensus 112 KktLVLDLDeTLIhs~~ 128 (278)
|..+|+|+||||+....
T Consensus 1 ~~~iiFD~dgTL~~~~~ 17 (188)
T TIGR01489 1 KVVVVSDFDGTITLNDS 17 (188)
T ss_pred CeEEEEeCCCcccCCCc
Confidence 46789999999998754
No 170
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=66.55 E-value=12 Score=33.25 Aligned_cols=52 Identities=21% Similarity=0.365 Sum_probs=45.8
Q ss_pred EEeCcCHHHHHHHHhh-cceEEEEcCCchHHHHHHHHHhCCCCcccEEEecCC
Q 044274 152 VLKRPGVDAFLDAISK-KYEVVVFTAGLKEYASLLLNRLDRNGVISHRLYRDS 203 (278)
Q Consensus 152 v~~RP~l~eFL~~l~~-~fEIvI~Taa~~~YA~~vl~~LDp~~~f~~~l~R~~ 203 (278)
+.++|+..+.++++.+ -+.++|.|+|-..+++++.+.+.-+..+...+-.++
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~~~an~l~~~d 128 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDYVVANELEIDD 128 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCchheeeEEEEeC
Confidence 7789999999999995 599999999999999999999988777777666555
No 171
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=65.83 E-value=15 Score=33.15 Aligned_cols=15 Identities=13% Similarity=0.266 Sum_probs=13.3
Q ss_pred eEEEEeCCCceeecc
Q 044274 113 KTIFLDLDETLIHSK 127 (278)
Q Consensus 113 ktLVLDLDeTLIhs~ 127 (278)
++++||+||||+.+.
T Consensus 5 k~vIFDlDGTLiDs~ 19 (267)
T PRK13478 5 QAVIFDWAGTTVDFG 19 (267)
T ss_pred EEEEEcCCCCeecCC
Confidence 689999999999974
No 172
>PLN02954 phosphoserine phosphatase
Probab=65.57 E-value=3.7 Score=35.79 Aligned_cols=18 Identities=17% Similarity=0.338 Sum_probs=14.8
Q ss_pred CCeEEEEeCCCceeeccC
Q 044274 111 DKKTIFLDLDETLIHSKP 128 (278)
Q Consensus 111 ~KktLVLDLDeTLIhs~~ 128 (278)
..+++|+|+||||+.+..
T Consensus 11 ~~k~viFDfDGTL~~~~~ 28 (224)
T PLN02954 11 SADAVCFDVDSTVCVDEG 28 (224)
T ss_pred cCCEEEEeCCCcccchHH
Confidence 357999999999998743
No 173
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=65.18 E-value=12 Score=31.86 Aligned_cols=16 Identities=38% Similarity=0.306 Sum_probs=13.1
Q ss_pred eEEEEeCCCceeeccC
Q 044274 113 KTIFLDLDETLIHSKP 128 (278)
Q Consensus 113 ktLVLDLDeTLIhs~~ 128 (278)
+.|++||||||+.+..
T Consensus 1 k~viFDlDGTL~d~~~ 16 (203)
T TIGR02252 1 KLITFDAVGTLLALKE 16 (203)
T ss_pred CeEEEecCCceeeeCC
Confidence 4689999999998743
No 174
>PLN02382 probable sucrose-phosphatase
Probab=62.79 E-value=9.9 Score=37.40 Aligned_cols=17 Identities=29% Similarity=0.473 Sum_probs=14.3
Q ss_pred CCCeEEEEeCCCceeec
Q 044274 110 PDKKTIFLDLDETLIHS 126 (278)
Q Consensus 110 ~~KktLVLDLDeTLIhs 126 (278)
+.+..||.||||||+..
T Consensus 7 ~~~~lI~sDLDGTLL~~ 23 (413)
T PLN02382 7 SPRLMIVSDLDHTMVDH 23 (413)
T ss_pred CCCEEEEEcCCCcCcCC
Confidence 35789999999999965
No 175
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=62.10 E-value=4.2 Score=36.22 Aligned_cols=68 Identities=16% Similarity=0.232 Sum_probs=55.5
Q ss_pred EEeCcCHHHHHHHHhhc-ceEEEEcCCchHHHHHHHHHhCCCCcccEEEecCCccccC---Cceeccccccc
Q 044274 152 VLKRPGVDAFLDAISKK-YEVVVFTAGLKEYASLLLNRLDRNGVISHRLYRDSCKQID---GKFVKDLSEMG 219 (278)
Q Consensus 152 v~~RP~l~eFL~~l~~~-fEIvI~Taa~~~YA~~vl~~LDp~~~f~~~l~R~~c~~~~---g~~~KDL~~l~ 219 (278)
+...||+.+||+.|... .-+.+=|++....+..+++.+.-..+|..+.+.++..... ..|++-...+|
T Consensus 85 ~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~gl~~~f~~~v~~~dv~~~KP~Pd~yL~Aa~~Lg 156 (221)
T COG0637 85 LKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARLGLLDYFDVIVTADDVARGKPAPDIYLLAAERLG 156 (221)
T ss_pred CCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHccChhhcchhccHHHHhcCCCCCHHHHHHHHHcC
Confidence 57899999999999976 9999999999999999999998888888888887776532 24556666665
No 176
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=61.47 E-value=12 Score=32.56 Aligned_cols=16 Identities=38% Similarity=0.673 Sum_probs=11.6
Q ss_pred CeEEEEeCCCceeecc
Q 044274 112 KKTIFLDLDETLIHSK 127 (278)
Q Consensus 112 KktLVLDLDeTLIhs~ 127 (278)
-+.+++|+||||+.+.
T Consensus 4 ~~~viFD~DGTL~d~~ 19 (221)
T PRK10563 4 IEAVFFDCDGTLVDSE 19 (221)
T ss_pred CCEEEECCCCCCCCCh
Confidence 3577888888888753
No 177
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=60.75 E-value=3.8 Score=40.49 Aligned_cols=17 Identities=24% Similarity=0.536 Sum_probs=14.5
Q ss_pred CeEEEEeCCCceeeccC
Q 044274 112 KKTIFLDLDETLIHSKP 128 (278)
Q Consensus 112 KktLVLDLDeTLIhs~~ 128 (278)
-+.++||+||||+.+..
T Consensus 241 ~k~vIFDlDGTLiDs~~ 257 (459)
T PRK06698 241 LQALIFDMDGTLFQTDK 257 (459)
T ss_pred hhheeEccCCceecchh
Confidence 46899999999998854
No 178
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=60.51 E-value=22 Score=36.27 Aligned_cols=39 Identities=21% Similarity=0.293 Sum_probs=35.5
Q ss_pred EeCcCHHHHHHHHhh-cceEEEEcCCchHHHHHHHHHhCC
Q 044274 153 LKRPGVDAFLDAISK-KYEVVVFTAGLKEYASLLLNRLDR 191 (278)
Q Consensus 153 ~~RP~l~eFL~~l~~-~fEIvI~Taa~~~YA~~vl~~LDp 191 (278)
..||++.++++.|.+ .++++|-|...+.+++.+++.+.-
T Consensus 405 ~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~lgi 444 (562)
T TIGR01511 405 QLRPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKELGI 444 (562)
T ss_pred cccHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHcCC
Confidence 479999999999985 599999999999999999998864
No 179
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=60.23 E-value=28 Score=30.58 Aligned_cols=18 Identities=44% Similarity=0.567 Sum_probs=15.1
Q ss_pred CCeEEEEeCCCceeeccC
Q 044274 111 DKKTIFLDLDETLIHSKP 128 (278)
Q Consensus 111 ~KktLVLDLDeTLIhs~~ 128 (278)
..+++++||||||+.+..
T Consensus 3 ~~~~iiFDlDGTL~Ds~~ 20 (220)
T COG0546 3 MIKAILFDLDGTLVDSAE 20 (220)
T ss_pred CCCEEEEeCCCccccChH
Confidence 357899999999998864
No 180
>PRK11587 putative phosphatase; Provisional
Probab=59.87 E-value=19 Score=31.32 Aligned_cols=16 Identities=44% Similarity=0.563 Sum_probs=13.9
Q ss_pred CeEEEEeCCCceeecc
Q 044274 112 KKTIFLDLDETLIHSK 127 (278)
Q Consensus 112 KktLVLDLDeTLIhs~ 127 (278)
.++++|||||||+.+.
T Consensus 3 ~k~viFDlDGTL~Ds~ 18 (218)
T PRK11587 3 CKGFLFDLDGTLVDSL 18 (218)
T ss_pred CCEEEEcCCCCcCcCH
Confidence 3689999999999985
No 181
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=59.21 E-value=7.1 Score=34.71 Aligned_cols=25 Identities=16% Similarity=0.007 Sum_probs=17.5
Q ss_pred ceEEEEcCCchHHHHHHHHHhCCCC
Q 044274 169 YEVVVFTAGLKEYASLLLNRLDRNG 193 (278)
Q Consensus 169 fEIvI~Taa~~~YA~~vl~~LDp~~ 193 (278)
+....-+...-..+..+++.|..++
T Consensus 78 ~~~~~~~~~~~pGv~~~l~~L~~~~ 102 (221)
T COG0637 78 EALELEGLKPIPGVVELLEQLKARG 102 (221)
T ss_pred HHhhhcCCCCCccHHHHHHHHHhcC
Confidence 3344555666777888899888766
No 182
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=59.12 E-value=8.9 Score=35.25 Aligned_cols=58 Identities=14% Similarity=0.319 Sum_probs=46.3
Q ss_pred EEeCcCHHHHHHHHhh--cceEEEEcCCchHHHHHHHHHhCCCCcccEEEecCCccccCC
Q 044274 152 VLKRPGVDAFLDAISK--KYEVVVFTAGLKEYASLLLNRLDRNGVISHRLYRDSCKQIDG 209 (278)
Q Consensus 152 v~~RP~l~eFL~~l~~--~fEIvI~Taa~~~YA~~vl~~LDp~~~f~~~l~R~~c~~~~g 209 (278)
+-.=||+-+.++.+++ .||++|-|-+..-+.+.++++.+-..+|+.++.-..|....|
T Consensus 83 iP~~Pgmv~lik~~ak~g~~eliIVSDaNsfFIe~~Lea~~~~d~F~~IfTNPa~~da~G 142 (256)
T KOG3120|consen 83 IPIVPGMVRLIKSAAKLGCFELIIVSDANSFFIEEILEAAGIHDLFSEIFTNPACVDASG 142 (256)
T ss_pred CCCCccHHHHHHHHHhCCCceEEEEecCchhHHHHHHHHccHHHHHHHHhcCCcccCCCC
Confidence 3467999999999984 589999999999999999999876666666666666665554
No 183
>PLN02940 riboflavin kinase
Probab=58.76 E-value=13 Score=36.15 Aligned_cols=55 Identities=7% Similarity=0.126 Sum_probs=45.1
Q ss_pred EEeCcCHHHHHHHHhh-cceEEEEcCCchHHHHHHHH-HhCCCCcccEEEecCCccc
Q 044274 152 VLKRPGVDAFLDAISK-KYEVVVFTAGLKEYASLLLN-RLDRNGVISHRLYRDSCKQ 206 (278)
Q Consensus 152 v~~RP~l~eFL~~l~~-~fEIvI~Taa~~~YA~~vl~-~LDp~~~f~~~l~R~~c~~ 206 (278)
+...||+.++|+.|.+ .+.+.|-|++...++..+++ ..+-..+|..++..+++..
T Consensus 92 ~~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl~~~Fd~ii~~d~v~~ 148 (382)
T PLN02940 92 IKALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQGWKESFSVIVGGDEVEK 148 (382)
T ss_pred CCCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhccChHhhCCEEEehhhcCC
Confidence 3467999999999975 59999999999999998887 5555558899988887653
No 184
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=58.07 E-value=23 Score=31.81 Aligned_cols=47 Identities=21% Similarity=0.209 Sum_probs=37.8
Q ss_pred EeCcCHHHHHHHHh-hcceEEEEcCCchHHHHHHHHHhC---CCCcccEEE
Q 044274 153 LKRPGVDAFLDAIS-KKYEVVVFTAGLKEYASLLLNRLD---RNGVISHRL 199 (278)
Q Consensus 153 ~~RP~l~eFL~~l~-~~fEIvI~Taa~~~YA~~vl~~LD---p~~~f~~~l 199 (278)
...|++.++|+.+. +.+.++|+|+++..+...+++..+ -..+|...+
T Consensus 95 ~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~~~~~L~~~f~~~f 145 (220)
T TIGR01691 95 HLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHSDAGNLTPYFSGYF 145 (220)
T ss_pred CcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhccccchhhhcceEE
Confidence 47899999999997 479999999999999988888763 223566554
No 185
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=57.87 E-value=5.7 Score=38.92 Aligned_cols=18 Identities=6% Similarity=0.093 Sum_probs=15.6
Q ss_pred CCCeEEEEeCCCceeecc
Q 044274 110 PDKKTIFLDLDETLIHSK 127 (278)
Q Consensus 110 ~~KktLVLDLDeTLIhs~ 127 (278)
.+-+.+|||+|||||.+.
T Consensus 129 ~~~~~VIFDlDGTLIDS~ 146 (381)
T PLN02575 129 CGWLGAIFEWEGVIIEDN 146 (381)
T ss_pred CCCCEEEEcCcCcceeCH
Confidence 467899999999999865
No 186
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=57.47 E-value=9 Score=33.88 Aligned_cols=13 Identities=46% Similarity=0.644 Sum_probs=11.1
Q ss_pred EEEEeCCCceeec
Q 044274 114 TIFLDLDETLIHS 126 (278)
Q Consensus 114 tLVLDLDeTLIhs 126 (278)
++++||||||+..
T Consensus 1 li~~DlDgTLl~~ 13 (236)
T TIGR02471 1 LIITDLDNTLLGD 13 (236)
T ss_pred CeEEeccccccCC
Confidence 3788999999974
No 187
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=57.12 E-value=10 Score=34.33 Aligned_cols=13 Identities=46% Similarity=0.572 Sum_probs=11.8
Q ss_pred CeEEEEeCCCcee
Q 044274 112 KKTIFLDLDETLI 124 (278)
Q Consensus 112 KktLVLDLDeTLI 124 (278)
+..||-||||||+
T Consensus 2 ~~ll~sDlD~Tl~ 14 (247)
T PF05116_consen 2 PRLLASDLDGTLI 14 (247)
T ss_dssp SEEEEEETBTTTB
T ss_pred CEEEEEECCCCCc
Confidence 5789999999999
No 188
>PLN02940 riboflavin kinase
Probab=56.75 E-value=5.4 Score=38.67 Aligned_cols=16 Identities=38% Similarity=0.652 Sum_probs=13.6
Q ss_pred CeEEEEeCCCceeecc
Q 044274 112 KKTIFLDLDETLIHSK 127 (278)
Q Consensus 112 KktLVLDLDeTLIhs~ 127 (278)
-+.+++|+||||+.+.
T Consensus 11 ik~VIFDlDGTLvDt~ 26 (382)
T PLN02940 11 VSHVILDLDGTLLNTD 26 (382)
T ss_pred CCEEEECCcCcCCcCH
Confidence 4578999999999874
No 189
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=56.31 E-value=6.5 Score=33.97 Aligned_cols=18 Identities=39% Similarity=0.503 Sum_probs=14.9
Q ss_pred CCeEEEEeCCCceeeccC
Q 044274 111 DKKTIFLDLDETLIHSKP 128 (278)
Q Consensus 111 ~KktLVLDLDeTLIhs~~ 128 (278)
.-+.+++|+||||++...
T Consensus 3 ~~k~i~FD~d~TL~d~~~ 20 (229)
T COG1011 3 MIKAILFDLDGTLLDFDS 20 (229)
T ss_pred ceeEEEEecCCcccccch
Confidence 357899999999999754
No 190
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=56.19 E-value=19 Score=34.78 Aligned_cols=52 Identities=17% Similarity=0.271 Sum_probs=43.1
Q ss_pred eEEEEeCcCHHHHHHHHhh-cceEEEEcCCchHHHHHHHHHh-C-----C-CC-cccEEEe
Q 044274 149 NFYVLKRPGVDAFLDAISK-KYEVVVFTAGLKEYASLLLNRL-D-----R-NG-VISHRLY 200 (278)
Q Consensus 149 ~~~v~~RP~l~eFL~~l~~-~fEIvI~Taa~~~YA~~vl~~L-D-----p-~~-~f~~~l~ 200 (278)
.-|+.+=|++.++|+.+.+ ...+.|-|++...|++.+++.+ + + +. +|+.++.
T Consensus 180 ~~yv~~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l~g~~~~~~~w~~yFD~IIt 240 (343)
T TIGR02244 180 EKYVLRDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYLLGPFLGEHDWRDYFDVVIV 240 (343)
T ss_pred HHHhccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhhCCcccccchHhhCcEEEe
Confidence 4578889999999999985 5899999999999999999997 5 2 23 7765544
No 191
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=55.62 E-value=6.5 Score=34.50 Aligned_cols=17 Identities=29% Similarity=0.481 Sum_probs=14.2
Q ss_pred CeEEEEeCCCceeeccC
Q 044274 112 KKTIFLDLDETLIHSKP 128 (278)
Q Consensus 112 KktLVLDLDeTLIhs~~ 128 (278)
+.++++|+||||+....
T Consensus 3 ~~~vifDfDgTi~~~d~ 19 (219)
T PRK09552 3 SIQIFCDFDGTITNNDN 19 (219)
T ss_pred CcEEEEcCCCCCCcchh
Confidence 56899999999997754
No 192
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=53.90 E-value=7.1 Score=34.83 Aligned_cols=15 Identities=53% Similarity=0.616 Sum_probs=13.8
Q ss_pred CCeEEEEeCCCceee
Q 044274 111 DKKTIFLDLDETLIH 125 (278)
Q Consensus 111 ~KktLVLDLDeTLIh 125 (278)
.++.+|+|+|+||+.
T Consensus 4 ~~~L~vFD~D~TLi~ 18 (212)
T COG0560 4 MKKLAVFDLDGTLIN 18 (212)
T ss_pred ccceEEEecccchhh
Confidence 578999999999999
No 193
>PRK11590 hypothetical protein; Provisional
Probab=53.80 E-value=21 Score=31.23 Aligned_cols=17 Identities=35% Similarity=0.765 Sum_probs=14.1
Q ss_pred CCeEEEEeCCCceeecc
Q 044274 111 DKKTIFLDLDETLIHSK 127 (278)
Q Consensus 111 ~KktLVLDLDeTLIhs~ 127 (278)
.++++++|+||||++..
T Consensus 5 ~~k~~iFD~DGTL~~~d 21 (211)
T PRK11590 5 ERRVVFFDLDGTLHQQD 21 (211)
T ss_pred cceEEEEecCCCCcccc
Confidence 56799999999999543
No 194
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=53.60 E-value=7.9 Score=34.29 Aligned_cols=37 Identities=11% Similarity=0.044 Sum_probs=32.9
Q ss_pred EeCcCHHHHHH-HHh-hcceEEEEcCCchHHHHHHHHHh
Q 044274 153 LKRPGVDAFLD-AIS-KKYEVVVFTAGLKEYASLLLNRL 189 (278)
Q Consensus 153 ~~RP~l~eFL~-~l~-~~fEIvI~Taa~~~YA~~vl~~L 189 (278)
..+|++.+.|+ ++. +...++|-|++...|++++++..
T Consensus 94 ~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~~ 132 (210)
T TIGR01545 94 TAFPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFDS 132 (210)
T ss_pred CCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHhc
Confidence 56999999995 777 58999999999999999999763
No 195
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=53.51 E-value=7.5 Score=33.45 Aligned_cols=56 Identities=16% Similarity=0.212 Sum_probs=40.9
Q ss_pred EEEeCcCHHHHHHHHhh-cceEEEEcCCchHHHHHHHHHh-CCCCcccEEEecCCccc
Q 044274 151 YVLKRPGVDAFLDAISK-KYEVVVFTAGLKEYASLLLNRL-DRNGVISHRLYRDSCKQ 206 (278)
Q Consensus 151 ~v~~RP~l~eFL~~l~~-~fEIvI~Taa~~~YA~~vl~~L-Dp~~~f~~~l~R~~c~~ 206 (278)
+....|++.++|+.+.+ .+.++|-|++....+..++... .-..+|...++.+++..
T Consensus 82 ~~~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~~~l~~~fd~v~~s~~~~~ 139 (199)
T PRK09456 82 FVALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEVRAAADHIYLSQDLGM 139 (199)
T ss_pred HhccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhchhHHHhcCEEEEecccCC
Confidence 34578999999999985 6999999999887766555432 22236777777666554
No 196
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=53.14 E-value=7 Score=34.51 Aligned_cols=13 Identities=31% Similarity=0.478 Sum_probs=11.2
Q ss_pred EEEEeCCCceeec
Q 044274 114 TIFLDLDETLIHS 126 (278)
Q Consensus 114 tLVLDLDeTLIhs 126 (278)
+.+||||||||..
T Consensus 3 la~FDlD~TLi~~ 15 (203)
T TIGR02137 3 IACLDLEGVLVPE 15 (203)
T ss_pred EEEEeCCcccHHH
Confidence 4789999999964
No 197
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=52.23 E-value=17 Score=30.39 Aligned_cols=45 Identities=22% Similarity=0.372 Sum_probs=36.1
Q ss_pred CcCHH----HHHHHHh-hcceEEEEcCCchHHHHHHHHHhCCCC--cccEEE
Q 044274 155 RPGVD----AFLDAIS-KKYEVVVFTAGLKEYASLLLNRLDRNG--VISHRL 199 (278)
Q Consensus 155 RP~l~----eFL~~l~-~~fEIvI~Taa~~~YA~~vl~~LDp~~--~f~~~l 199 (278)
+|++. +||+.+. ..++++|-|++...+++.+++.+.-.. ++...+
T Consensus 87 ~~~~~~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~~~~v~~~~~ 138 (192)
T PF12710_consen 87 FPGFIPDAMELIRELKDNGIKVVIVSGSPDEIIEPIAERLGIDDDNVIGNEL 138 (192)
T ss_dssp CTTCHTTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTSSEGGEEEEEE
T ss_pred CcCchhhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEEEEEee
Confidence 46666 9999984 789999999999999999999776443 444445
No 198
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=51.16 E-value=34 Score=30.23 Aligned_cols=18 Identities=44% Similarity=0.637 Sum_probs=15.2
Q ss_pred CCeEEEEeCCCceeeccC
Q 044274 111 DKKTIFLDLDETLIHSKP 128 (278)
Q Consensus 111 ~KktLVLDLDeTLIhs~~ 128 (278)
-++..++|+||||++..+
T Consensus 4 ~~~la~FDfDgTLt~~ds 21 (210)
T TIGR01545 4 AKRIIFFDLDGTLHQQDM 21 (210)
T ss_pred cCcEEEEcCCCCCccCcc
Confidence 467889999999999865
No 199
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=50.93 E-value=17 Score=32.37 Aligned_cols=51 Identities=24% Similarity=0.346 Sum_probs=30.5
Q ss_pred EEeCCCceeeccCCCCCCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHhhcce--EEEEcCCchHHHHHH
Q 044274 116 FLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAISKKYE--VVVFTAGLKEYASLL 185 (278)
Q Consensus 116 VLDLDeTLIhs~~~~~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~~~fE--IvI~Taa~~~YA~~v 185 (278)
.||.||||.-....+.. ...-|.+.+.|+.|+.... |+|-|.-.....+..
T Consensus 1 ~lDyDGTL~p~~~~p~~-------------------~~~~~~~~~~L~~La~~~~~~v~IvSGR~~~~~~~~ 53 (235)
T PF02358_consen 1 FLDYDGTLAPIVDDPDA-------------------AVPPPELRELLRALAADPNNTVAIVSGRSLDDLERF 53 (235)
T ss_dssp EEE-TTTSS---S-GGG-----------------------HHHHHHHHHHHHHSE--EEEE-SS-HHHHHHH
T ss_pred CcccCCccCCCCCCccc-------------------cCCCHHHHHHHHHHhccCCCEEEEEEeCCHHHhHHh
Confidence 58999999976654321 1346889999999998877 777777766664443
No 200
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=50.93 E-value=31 Score=31.88 Aligned_cols=16 Identities=19% Similarity=0.528 Sum_probs=13.4
Q ss_pred CeEEEEeCCCceeecc
Q 044274 112 KKTIFLDLDETLIHSK 127 (278)
Q Consensus 112 KktLVLDLDeTLIhs~ 127 (278)
-+++|||+||||+.+.
T Consensus 40 ~k~VIFDlDGTLvDS~ 55 (286)
T PLN02779 40 PEALLFDCDGVLVETE 55 (286)
T ss_pred CcEEEEeCceeEEccc
Confidence 3588999999999887
No 201
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=49.43 E-value=10 Score=36.06 Aligned_cols=42 Identities=17% Similarity=0.391 Sum_probs=36.7
Q ss_pred EEeCcCHHHHHHHHhh-cceEEEEcCCchHHHHHHHHHhCCCC
Q 044274 152 VLKRPGVDAFLDAISK-KYEVVVFTAGLKEYASLLLNRLDRNG 193 (278)
Q Consensus 152 v~~RP~l~eFL~~l~~-~fEIvI~Taa~~~YA~~vl~~LDp~~ 193 (278)
+...||+.++|+.+.+ .+.++|.|++...+++.+.+.+.-..
T Consensus 180 l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~Lgld~ 222 (322)
T PRK11133 180 LPLMPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKLRLDA 222 (322)
T ss_pred CCCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHcCCCe
Confidence 5579999999999985 59999999999999999999886544
No 202
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=47.89 E-value=20 Score=30.86 Aligned_cols=15 Identities=27% Similarity=0.516 Sum_probs=13.0
Q ss_pred eEEEEeCCCceeecc
Q 044274 113 KTIFLDLDETLIHSK 127 (278)
Q Consensus 113 ktLVLDLDeTLIhs~ 127 (278)
++++|||||||+.+.
T Consensus 3 k~viFDldGtL~d~~ 17 (211)
T TIGR02247 3 KAVIFDFGGVLLPSP 17 (211)
T ss_pred eEEEEecCCceecCH
Confidence 589999999999864
No 203
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=46.48 E-value=33 Score=28.47 Aligned_cols=15 Identities=20% Similarity=0.501 Sum_probs=12.6
Q ss_pred EEEEeCCCceeeccC
Q 044274 114 TIFLDLDETLIHSKP 128 (278)
Q Consensus 114 tLVLDLDeTLIhs~~ 128 (278)
.+++|+||||+.+..
T Consensus 1 ~iiFD~DGTL~ds~~ 15 (185)
T TIGR01990 1 AVIFDLDGVITDTAE 15 (185)
T ss_pred CeEEcCCCccccChH
Confidence 379999999998763
No 204
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=45.81 E-value=14 Score=31.75 Aligned_cols=30 Identities=20% Similarity=0.316 Sum_probs=25.4
Q ss_pred EEeCcCHHHHHHHHhhcceEEEEcCCchHH
Q 044274 152 VLKRPGVDAFLDAISKKYEVVVFTAGLKEY 181 (278)
Q Consensus 152 v~~RP~l~eFL~~l~~~fEIvI~Taa~~~Y 181 (278)
+..-||.++-+++|-++|+|+|-|+++..+
T Consensus 67 L~V~p~aq~v~keLt~~y~vYivtaamdhp 96 (180)
T COG4502 67 LGVQPFAQTVLKELTSIYNVYIVTAAMDHP 96 (180)
T ss_pred cCccccHHHHHHHHHhhheEEEEEeccCCc
Confidence 345699999999999999999999996443
No 205
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=43.31 E-value=35 Score=29.25 Aligned_cols=14 Identities=14% Similarity=0.375 Sum_probs=12.3
Q ss_pred EEEEeCCCceeecc
Q 044274 114 TIFLDLDETLIHSK 127 (278)
Q Consensus 114 tLVLDLDeTLIhs~ 127 (278)
++|+||||||+...
T Consensus 2 ~viFDldgvL~d~~ 15 (199)
T PRK09456 2 LYIFDLGNVIVDID 15 (199)
T ss_pred EEEEeCCCccccCc
Confidence 68999999999864
No 206
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=42.99 E-value=12 Score=31.93 Aligned_cols=14 Identities=36% Similarity=0.586 Sum_probs=11.8
Q ss_pred EEEeCCCceeeccC
Q 044274 115 IFLDLDETLIHSKP 128 (278)
Q Consensus 115 LVLDLDeTLIhs~~ 128 (278)
.++|+||||+....
T Consensus 2 a~FD~DgTL~~~~s 15 (202)
T TIGR01490 2 AFFDFDGTLTAKDT 15 (202)
T ss_pred eEEccCCCCCCCch
Confidence 58899999998754
No 207
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=41.88 E-value=49 Score=36.64 Aligned_cols=53 Identities=13% Similarity=0.105 Sum_probs=45.5
Q ss_pred eCcCHHHHHHHHh-hcceEEEEcCCchHHHHHHHHHhCCC-CcccEEEecCCccc
Q 044274 154 KRPGVDAFLDAIS-KKYEVVVFTAGLKEYASLLLNRLDRN-GVISHRLYRDSCKQ 206 (278)
Q Consensus 154 ~RP~l~eFL~~l~-~~fEIvI~Taa~~~YA~~vl~~LDp~-~~f~~~l~R~~c~~ 206 (278)
.-||+.++|++|. +.+.++|-|++...+++.+++.+.-. .+|..++..+++..
T Consensus 162 ~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~gl~~~~Fd~iv~~~~~~~ 216 (1057)
T PLN02919 162 GFPGALELITQCKNKGLKVAVASSADRIKVDANLAAAGLPLSMFDAIVSADAFEN 216 (1057)
T ss_pred cCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHcCCChhHCCEEEECccccc
Confidence 4799999999998 56999999999999999999998764 47888888777654
No 208
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=40.61 E-value=53 Score=32.54 Aligned_cols=57 Identities=21% Similarity=0.244 Sum_probs=36.0
Q ss_pred CCCeEEEEeCCCceeeccCCCCCCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHh-hcceEEEEcCCc
Q 044274 110 PDKKTIFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAIS-KKYEVVVFTAGL 178 (278)
Q Consensus 110 ~~KktLVLDLDeTLIhs~~~~~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~-~~fEIvI~Taa~ 178 (278)
.+.+.+.+|+|||||........ .. ....+.+..++.... |+.+. ..|-++|+|...
T Consensus 73 ~~~K~i~FD~dgtlI~t~sg~vf-----~~------~~~dw~~l~~~vp~K-lktl~~~g~~l~iftnq~ 130 (422)
T KOG2134|consen 73 GGSKIIMFDYDGTLIDTKSGKVF-----PK------GSMDWRILFPEVPSK-LKTLYQDGIKLFIFTNQN 130 (422)
T ss_pred CCcceEEEecCCceeecCCccee-----ec------cCccceeeccccchh-hhhhccCCeEEEEEeccc
Confidence 46788999999999998764321 00 012233444444444 45555 689999998754
No 209
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=40.38 E-value=27 Score=33.05 Aligned_cols=31 Identities=29% Similarity=0.573 Sum_probs=26.6
Q ss_pred CchHHHHHHHHHHhcCCCCcHHHHHHhcCC-Cchhhhhhc
Q 044274 239 SDIELWKLVNFFEACDCFVDMRDAVKAFDL-GERYEKLEE 277 (278)
Q Consensus 239 ~D~eLl~L~~~L~~L~~~~DVR~~lk~~~~-~~~~~~~~~ 277 (278)
+|.||.++++-+. +++||+|++ .|+|+.++|
T Consensus 56 nDpEmK~iid~~n--------~eaikkyqqT~~~f~e~~e 87 (295)
T TIGR01478 56 NDPELKEIIDKLN--------EEAIKKYQETHDPYEQLQE 87 (295)
T ss_pred CcHHHHHHHHHHh--------HHHhhhhhhhcchHHHHHH
Confidence 5899999988875 689999977 799999987
No 210
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=40.34 E-value=58 Score=25.17 Aligned_cols=16 Identities=31% Similarity=0.368 Sum_probs=13.7
Q ss_pred CeEEEEeCCCceeecc
Q 044274 112 KKTIFLDLDETLIHSK 127 (278)
Q Consensus 112 KktLVLDLDeTLIhs~ 127 (278)
..+|||+=|||.|.+.
T Consensus 39 ~~~lvLeeDGT~Vd~E 54 (81)
T cd06537 39 VLTLVLEEDGTAVDSE 54 (81)
T ss_pred ceEEEEecCCCEEccH
Confidence 3799999999999664
No 211
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=40.12 E-value=54 Score=35.50 Aligned_cols=59 Identities=15% Similarity=0.179 Sum_probs=36.7
Q ss_pred CCCeEEEEeCCCceeeccCCCCCCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHhh--cceEEEEcCCchHHHHHHHH
Q 044274 110 PDKKTIFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAISK--KYEVVVFTAGLKEYASLLLN 187 (278)
Q Consensus 110 ~~KktLVLDLDeTLIhs~~~~~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~~--~fEIvI~Taa~~~YA~~vl~ 187 (278)
.+++.|+||+||||+...... ...-|.+.+.|+.|.+ .-.|+|-|.-...-.+.++.
T Consensus 594 ~~~rlI~LDyDGTLlp~~~~~---------------------~~p~~~~~~~L~~L~~d~g~~VaIvSGR~~~~L~~~f~ 652 (854)
T PLN02205 594 TTTRAILLDYDGTLMPQASID---------------------KSPSSKSIDILNTLCRDKNNMVFIVSARSRKTLADWFS 652 (854)
T ss_pred hcCeEEEEecCCcccCCcccc---------------------CCCCHHHHHHHHHHHhcCCCEEEEEeCCCHHHHHHHhC
Confidence 367899999999999543210 0013567777777753 45566666666666666554
Q ss_pred Hh
Q 044274 188 RL 189 (278)
Q Consensus 188 ~L 189 (278)
.+
T Consensus 653 ~~ 654 (854)
T PLN02205 653 PC 654 (854)
T ss_pred CC
Confidence 44
No 212
>PLN02811 hydrolase
Probab=40.08 E-value=42 Score=29.30 Aligned_cols=50 Identities=14% Similarity=0.157 Sum_probs=36.4
Q ss_pred EeCcCHHHHHHHHhh-cceEEEEcCCchHHHHHHHH-HhCCCCcccEEEecC
Q 044274 153 LKRPGVDAFLDAISK-KYEVVVFTAGLKEYASLLLN-RLDRNGVISHRLYRD 202 (278)
Q Consensus 153 ~~RP~l~eFL~~l~~-~fEIvI~Taa~~~YA~~vl~-~LDp~~~f~~~l~R~ 202 (278)
...||+.++|+.|.+ .+.+.|-|++...++...+. ......+|...++.+
T Consensus 78 ~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~~~f~~i~~~~ 129 (220)
T PLN02811 78 DLMPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELFSLMHHVVTGD 129 (220)
T ss_pred CCCccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHHhhCCEEEECC
Confidence 357999999999985 69999999998876554332 222234777888877
No 213
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=39.68 E-value=21 Score=36.17 Aligned_cols=19 Identities=11% Similarity=0.132 Sum_probs=16.8
Q ss_pred eEEEEcCCchHHHHHHHHH
Q 044274 170 EVVVFTAGLKEYASLLLNR 188 (278)
Q Consensus 170 EIvI~Taa~~~YA~~vl~~ 188 (278)
+.+|-|++...|++++++.
T Consensus 124 ~~vvVSASp~~~Vepfa~~ 142 (497)
T PLN02177 124 KRYIITASPRIMVEPFVKT 142 (497)
T ss_pred CEEEEECCcHHHHHHHHHH
Confidence 4699999999999999965
No 214
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=39.63 E-value=68 Score=26.94 Aligned_cols=41 Identities=22% Similarity=0.271 Sum_probs=36.8
Q ss_pred EEeCcCHHHHHHHHhhc-ceEEEEcCCchHHHHHHHHHhCCC
Q 044274 152 VLKRPGVDAFLDAISKK-YEVVVFTAGLKEYASLLLNRLDRN 192 (278)
Q Consensus 152 v~~RP~l~eFL~~l~~~-fEIvI~Taa~~~YA~~vl~~LDp~ 192 (278)
-..||++.++|+.|.+. +.++|.|......|..+.+.+.-.
T Consensus 126 d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lgi~ 167 (215)
T PF00702_consen 126 DPLRPGAKEALQELKEAGIKVAILTGDNESTASAIAKQLGIF 167 (215)
T ss_dssp EEBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTSC
T ss_pred CcchhhhhhhhhhhhccCcceeeeeccccccccccccccccc
Confidence 45799999999999976 899999999999999999998763
No 215
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=39.32 E-value=51 Score=31.36 Aligned_cols=17 Identities=24% Similarity=0.372 Sum_probs=14.4
Q ss_pred CCCeEEEEeCCCceeec
Q 044274 110 PDKKTIFLDLDETLIHS 126 (278)
Q Consensus 110 ~~KktLVLDLDeTLIhs 126 (278)
.....+|+|+|||||..
T Consensus 108 ~~~~LvvfDmDGTLI~~ 124 (322)
T PRK11133 108 RTPGLLVMDMDSTAIQI 124 (322)
T ss_pred cCCCEEEEECCCCCcch
Confidence 46789999999999954
No 216
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=39.30 E-value=79 Score=32.09 Aligned_cols=44 Identities=18% Similarity=0.252 Sum_probs=38.4
Q ss_pred EeCcCHHHHHHHHhh-c-ceEEEEcCCchHHHHHHHHHhCCCCccc
Q 044274 153 LKRPGVDAFLDAISK-K-YEVVVFTAGLKEYASLLLNRLDRNGVIS 196 (278)
Q Consensus 153 ~~RP~l~eFL~~l~~-~-fEIvI~Taa~~~YA~~vl~~LDp~~~f~ 196 (278)
..||++.+.|++|.+ . +.++|-|.....++..+++.+.-..+|.
T Consensus 384 ~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~~~lgi~~~f~ 429 (556)
T TIGR01525 384 QLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAELGIDEVHA 429 (556)
T ss_pred cchHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHHHHhCCCeeec
Confidence 489999999999975 5 8999999999999999999998755443
No 217
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=38.88 E-value=53 Score=25.17 Aligned_cols=16 Identities=25% Similarity=0.416 Sum_probs=13.6
Q ss_pred CeEEEEeCCCceeecc
Q 044274 112 KKTIFLDLDETLIHSK 127 (278)
Q Consensus 112 KktLVLDLDeTLIhs~ 127 (278)
-.+|||+=|||.|.+.
T Consensus 40 ~~~lvL~eDGT~Vd~E 55 (78)
T cd06539 40 LVTLVLEEDGTVVDTE 55 (78)
T ss_pred CcEEEEeCCCCEEccH
Confidence 4699999999999663
No 218
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=38.61 E-value=53 Score=36.03 Aligned_cols=70 Identities=17% Similarity=0.246 Sum_probs=47.2
Q ss_pred CCCeEEEEeCCCceeeccCCCCCCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHhhc--ceEEEEcCCchHHHHHHHH
Q 044274 110 PDKKTIFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAISKK--YEVVVFTAGLKEYASLLLN 187 (278)
Q Consensus 110 ~~KktLVLDLDeTLIhs~~~~~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~~~--fEIvI~Taa~~~YA~~vl~ 187 (278)
.++..|+||.||||+-....+.. ..+.+. ..-+..-|.+.+.|+.|... -.|+|-|--..+-.+.++.
T Consensus 589 a~~RLlfLDyDGTLap~~~~P~~-~~~~~~---------~~~a~p~p~l~~~L~~L~~dp~n~VaIVSGR~~~~Le~~fg 658 (934)
T PLN03064 589 SNNRLLILGFNATLTEPVDTPGR-RGDQIK---------EMELRLHPELKEPLRALCSDPKTTIVVLSGSDRSVLDENFG 658 (934)
T ss_pred ccceEEEEecCceeccCCCCccc-cccccc---------ccccCCCHHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhC
Confidence 36789999999999976544321 011100 01122347788999999864 7788888888888888887
Q ss_pred Hh
Q 044274 188 RL 189 (278)
Q Consensus 188 ~L 189 (278)
.+
T Consensus 659 ~~ 660 (934)
T PLN03064 659 EF 660 (934)
T ss_pred CC
Confidence 65
No 219
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=38.17 E-value=55 Score=35.11 Aligned_cols=64 Identities=16% Similarity=0.173 Sum_probs=43.3
Q ss_pred CCCeEEEEeCCCceeeccCCCCCCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHhhc--ceEEEEcCCchHHHHHHHH
Q 044274 110 PDKKTIFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAISKK--YEVVVFTAGLKEYASLLLN 187 (278)
Q Consensus 110 ~~KktLVLDLDeTLIhs~~~~~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~~~--fEIvI~Taa~~~YA~~vl~ 187 (278)
.++..|+||.||||+.....+. ..+ -+..-|.+.+-|..|++. -.|+|-|.-..+-.+.++.
T Consensus 505 a~~rll~LDyDGTL~~~~~~~~--~p~--------------~a~p~~~l~~~L~~L~~d~~~~V~IvSGR~~~~L~~~~~ 568 (797)
T PLN03063 505 SNNRLLILGFYGTLTEPRNSQI--KEM--------------DLGLHPELKETLKALCSDPKTTVVVLSRSGKDILDKNFG 568 (797)
T ss_pred ccCeEEEEecCccccCCCCCcc--ccc--------------cCCCCHHHHHHHHHHHcCCCCEEEEEeCCCHHHHHHHhC
Confidence 4678999999999995432210 000 112357888899999864 6788888777777777776
Q ss_pred Hh
Q 044274 188 RL 189 (278)
Q Consensus 188 ~L 189 (278)
.+
T Consensus 569 ~~ 570 (797)
T PLN03063 569 EY 570 (797)
T ss_pred CC
Confidence 43
No 220
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=37.81 E-value=80 Score=27.22 Aligned_cols=49 Identities=22% Similarity=0.375 Sum_probs=31.3
Q ss_pred EEEeCCCceeeccCCCCCCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHhhc-ceEEEEcC
Q 044274 115 IFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAISKK-YEVVVFTA 176 (278)
Q Consensus 115 LVLDLDeTLIhs~~~~~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~~~-fEIvI~Ta 176 (278)
+|-|+||||--|...-. +.. ..+. - +.+||+.++...+.++ |.++=-|+
T Consensus 2 VvsDIDGTiT~SD~~G~------i~~-~~G~-----d-~~h~g~~~l~~~i~~~GY~ilYlTa 51 (157)
T PF08235_consen 2 VVSDIDGTITKSDVLGH------ILP-ILGK-----D-WTHPGAAELYRKIADNGYKILYLTA 51 (157)
T ss_pred EEEeccCCcCccchhhh------hhh-ccCc-----h-hhhhcHHHHHHHHHHCCeEEEEECc
Confidence 67799999998853210 000 0111 1 5799999999999965 65544444
No 221
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=37.71 E-value=15 Score=30.45 Aligned_cols=13 Identities=23% Similarity=0.439 Sum_probs=11.7
Q ss_pred EEEeCCCceeecc
Q 044274 115 IFLDLDETLIHSK 127 (278)
Q Consensus 115 LVLDLDeTLIhs~ 127 (278)
|+||+||||+.+.
T Consensus 2 viFD~DGTL~D~~ 14 (175)
T TIGR01493 2 MVFDVYGTLVDVH 14 (175)
T ss_pred eEEecCCcCcccH
Confidence 7899999999876
No 222
>PTZ00370 STEVOR; Provisional
Probab=37.14 E-value=32 Score=32.62 Aligned_cols=31 Identities=29% Similarity=0.576 Sum_probs=26.2
Q ss_pred CchHHHHHHHHHHhcCCCCcHHHHHHhcCC-Cchhhhhhc
Q 044274 239 SDIELWKLVNFFEACDCFVDMRDAVKAFDL-GERYEKLEE 277 (278)
Q Consensus 239 ~D~eLl~L~~~L~~L~~~~DVR~~lk~~~~-~~~~~~~~~ 277 (278)
+|.||.++++-+. +++||+|++ .|+|+.++|
T Consensus 55 NDpemK~i~d~~n--------~eaikkyqqT~~~f~e~~e 86 (296)
T PTZ00370 55 NDPELKEIIDKMN--------EEAIKKYQQTHDPYEQLKE 86 (296)
T ss_pred CcHHHHHHHHHHh--------HHHhhhhhhhcchHHHHHH
Confidence 5899999988875 589999977 799999887
No 223
>PHA02597 30.2 hypothetical protein; Provisional
Probab=36.17 E-value=32 Score=29.22 Aligned_cols=16 Identities=38% Similarity=0.521 Sum_probs=13.7
Q ss_pred CeEEEEeCCCceeecc
Q 044274 112 KKTIFLDLDETLIHSK 127 (278)
Q Consensus 112 KktLVLDLDeTLIhs~ 127 (278)
.+.+++||||||+...
T Consensus 2 ~k~viFDlDGTLiD~~ 17 (197)
T PHA02597 2 KPTILTDVDGVLLSWQ 17 (197)
T ss_pred CcEEEEecCCceEchh
Confidence 3689999999999954
No 224
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=36.04 E-value=43 Score=30.99 Aligned_cols=38 Identities=26% Similarity=0.608 Sum_probs=30.5
Q ss_pred EEeCcCHHHHHHHHhh-cceEEEEcCCchHHHHHHHHHh
Q 044274 152 VLKRPGVDAFLDAISK-KYEVVVFTAGLKEYASLLLNRL 189 (278)
Q Consensus 152 v~~RP~l~eFL~~l~~-~fEIvI~Taa~~~YA~~vl~~L 189 (278)
+.+|.|..+|++.|.+ .-=+.|||||...-.+.++.+-
T Consensus 89 i~LRdg~~~~f~~L~~~~IP~lIFSAGlgdvI~~vL~q~ 127 (246)
T PF05822_consen 89 IMLRDGVEEFFDKLEEHNIPLLIFSAGLGDVIEEVLRQA 127 (246)
T ss_dssp --B-BTHHHHHHHHHCTT--EEEEEEEEHHHHHHHHHHT
T ss_pred hhhhcCHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHc
Confidence 5689999999999996 5688999999999999999886
No 225
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=35.01 E-value=29 Score=35.30 Aligned_cols=19 Identities=16% Similarity=0.053 Sum_probs=18.0
Q ss_pred eEEEEcCCchHHHHHHHHH
Q 044274 170 EVVVFTAGLKEYASLLLNR 188 (278)
Q Consensus 170 EIvI~Taa~~~YA~~vl~~ 188 (278)
+++|-|++...|+++-++.
T Consensus 110 ~~vVVTAsPrvmVEpFake 128 (498)
T PLN02499 110 KRVVVTRMPRVMVERFAKE 128 (498)
T ss_pred eEEEEeCCHHHHHHHHHHH
Confidence 8999999999999999998
No 226
>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]
Probab=33.97 E-value=65 Score=29.38 Aligned_cols=56 Identities=27% Similarity=0.391 Sum_probs=36.2
Q ss_pred CCeEEEE-eCCCceeeccCCCCCCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHhhcceEEE-EcCCchHHH----HH
Q 044274 111 DKKTIFL-DLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAISKKYEVVV-FTAGLKEYA----SL 184 (278)
Q Consensus 111 ~KktLVL-DLDeTLIhs~~~~~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~~~fEIvI-~Taa~~~YA----~~ 184 (278)
...+|+| |.||||--.... .=|-+.+||+.+.+...|.+ .-+....-. +.
T Consensus 9 ~~~~l~lfdvdgtLt~~r~~------------------------~~~e~~~~l~~lr~~v~ig~VggsDl~k~~eqlG~~ 64 (252)
T KOG3189|consen 9 DEETLCLFDVDGTLTPPRQK------------------------VTPEMLEFLQKLRKKVTIGFVGGSDLSKQQEQLGDN 64 (252)
T ss_pred CCceEEEEecCCcccccccc------------------------CCHHHHHHHHHHhhheEEEEeecHHHHHHHHHhchh
Confidence 4445555 999999765432 35778999999998888854 444433333 44
Q ss_pred HHHHhC
Q 044274 185 LLNRLD 190 (278)
Q Consensus 185 vl~~LD 190 (278)
|++..|
T Consensus 65 Vl~~fD 70 (252)
T KOG3189|consen 65 VLEEFD 70 (252)
T ss_pred HHhhhc
Confidence 455554
No 227
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=33.82 E-value=69 Score=24.62 Aligned_cols=15 Identities=27% Similarity=0.415 Sum_probs=13.2
Q ss_pred eEEEEeCCCceeecc
Q 044274 113 KTIFLDLDETLIHSK 127 (278)
Q Consensus 113 ktLVLDLDeTLIhs~ 127 (278)
.+|||+-|||.|...
T Consensus 40 ~~lvL~eDGT~Vd~E 54 (79)
T cd06538 40 SSLVLDEDGTGVDTE 54 (79)
T ss_pred cEEEEecCCcEEccH
Confidence 799999999999654
No 228
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=32.84 E-value=51 Score=29.28 Aligned_cols=16 Identities=31% Similarity=0.565 Sum_probs=13.5
Q ss_pred CeEEEEeCCCceeecc
Q 044274 112 KKTIFLDLDETLIHSK 127 (278)
Q Consensus 112 KktLVLDLDeTLIhs~ 127 (278)
-+.|+|||||||+.+.
T Consensus 10 ~k~iiFDlDGTL~D~~ 25 (238)
T PRK10748 10 ISALTFDLDDTLYDNR 25 (238)
T ss_pred ceeEEEcCcccccCCh
Confidence 3689999999999863
No 229
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=32.19 E-value=28 Score=29.40 Aligned_cols=15 Identities=33% Similarity=0.419 Sum_probs=12.6
Q ss_pred eEEEEeCCCceeecc
Q 044274 113 KTIFLDLDETLIHSK 127 (278)
Q Consensus 113 ktLVLDLDeTLIhs~ 127 (278)
.++++|.||||....
T Consensus 2 ~~i~fDktGTLt~~~ 16 (215)
T PF00702_consen 2 DAICFDKTGTLTQGK 16 (215)
T ss_dssp SEEEEECCTTTBESH
T ss_pred eEEEEecCCCcccCe
Confidence 479999999998764
No 230
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=32.14 E-value=76 Score=24.41 Aligned_cols=17 Identities=24% Similarity=0.348 Sum_probs=14.2
Q ss_pred CCeEEEEeCCCceeecc
Q 044274 111 DKKTIFLDLDETLIHSK 127 (278)
Q Consensus 111 ~KktLVLDLDeTLIhs~ 127 (278)
...+|||+-|||.|...
T Consensus 41 ~~~~lvL~eDGT~VddE 57 (80)
T cd06536 41 APITLVLAEDGTIVEDE 57 (80)
T ss_pred CceEEEEecCCcEEccH
Confidence 35799999999999664
No 231
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=31.60 E-value=29 Score=29.41 Aligned_cols=74 Identities=18% Similarity=0.148 Sum_probs=38.8
Q ss_pred EEeCCCceeeccCCCCCCCCceEEeeccCCceeeEEEEeCcCHHHHHHHHhhcceEEEEcCCchHHHHHHHHHhC
Q 044274 116 FLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGVDAFLDAISKKYEVVVFTAGLKEYASLLLNRLD 190 (278)
Q Consensus 116 VLDLDeTLIhs~~~~~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL~~l~~~fEIvI~Taa~~~YA~~vl~~LD 190 (278)
+|||||.|++..+.......+.+-.+..-|.-.-+-.=+-|- -++.+.++..|.-++|+....--++.-.+...
T Consensus 47 ildL~G~~l~l~S~R~~~~~evi~~I~~~G~PviVAtDV~p~-P~~V~Kia~~f~A~ly~P~~dlsveeK~~l~~ 120 (138)
T PF04312_consen 47 ILDLDGELLDLKSSRNMSRSEVIEWISEYGKPVIVATDVSPP-PETVKKIARSFNAVLYTPERDLSVEEKQELAR 120 (138)
T ss_pred EEecCCcEEEEEeecCCCHHHHHHHHHHcCCEEEEEecCCCC-cHHHHHHHHHhCCcccCCCCcCCHHHHHHHHH
Confidence 589999999987665322222110000011111111112333 56777777788888887776555555444443
No 232
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=30.81 E-value=78 Score=24.00 Aligned_cols=16 Identities=25% Similarity=0.447 Sum_probs=13.7
Q ss_pred CeEEEEeCCCceeecc
Q 044274 112 KKTIFLDLDETLIHSK 127 (278)
Q Consensus 112 KktLVLDLDeTLIhs~ 127 (278)
-.+|||+=|||.|...
T Consensus 38 ~~~l~L~eDGT~VddE 53 (74)
T smart00266 38 PVTLVLEEDGTIVDDE 53 (74)
T ss_pred CcEEEEecCCcEEccH
Confidence 4699999999999664
No 233
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=30.22 E-value=28 Score=38.49 Aligned_cols=16 Identities=25% Similarity=0.522 Sum_probs=14.0
Q ss_pred CeEEEEeCCCceeecc
Q 044274 112 KKTIFLDLDETLIHSK 127 (278)
Q Consensus 112 KktLVLDLDeTLIhs~ 127 (278)
-+.+++|+||||+++.
T Consensus 75 ikaVIFDlDGTLiDS~ 90 (1057)
T PLN02919 75 VSAVLFDMDGVLCNSE 90 (1057)
T ss_pred CCEEEECCCCCeEeCh
Confidence 4689999999999985
No 234
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=29.69 E-value=84 Score=24.05 Aligned_cols=17 Identities=24% Similarity=0.305 Sum_probs=14.1
Q ss_pred CCeEEEEeCCCceeecc
Q 044274 111 DKKTIFLDLDETLIHSK 127 (278)
Q Consensus 111 ~KktLVLDLDeTLIhs~ 127 (278)
.-.+|||+-|||.|...
T Consensus 39 ~~~~lvL~eDGTeVddE 55 (78)
T cd01615 39 APVTLVLEEDGTEVDDE 55 (78)
T ss_pred CCeEEEEeCCCcEEccH
Confidence 45699999999999653
No 235
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=28.26 E-value=32 Score=31.56 Aligned_cols=14 Identities=36% Similarity=0.733 Sum_probs=0.0
Q ss_pred CCeEEEEeCCCcee
Q 044274 111 DKKTIFLDLDETLI 124 (278)
Q Consensus 111 ~KktLVLDLDeTLI 124 (278)
....+|+|+|+||+
T Consensus 19 ~~tLvvfDiDdTLi 32 (252)
T PF11019_consen 19 QDTLVVFDIDDTLI 32 (252)
T ss_pred CCeEEEEEcchhhh
No 236
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=24.57 E-value=43 Score=25.59 Aligned_cols=16 Identities=19% Similarity=0.275 Sum_probs=13.6
Q ss_pred CeEEEEeCCCceeecc
Q 044274 112 KKTIFLDLDETLIHSK 127 (278)
Q Consensus 112 KktLVLDLDeTLIhs~ 127 (278)
..+|||+-|||.|...
T Consensus 40 ~~~lvL~eDGT~VddE 55 (78)
T PF02017_consen 40 PVRLVLEEDGTEVDDE 55 (78)
T ss_dssp TCEEEETTTTCBESSC
T ss_pred CcEEEEeCCCcEEccH
Confidence 4689999999999854
No 237
>cd06535 CIDE_N_CAD CIDE_N domain of CAD nuclease. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and the release of active DFF40/CAD nuclease.
Probab=22.56 E-value=1.3e+02 Score=23.01 Aligned_cols=13 Identities=23% Similarity=0.153 Sum_probs=11.6
Q ss_pred CeEEEEeCCCcee
Q 044274 112 KKTIFLDLDETLI 124 (278)
Q Consensus 112 KktLVLDLDeTLI 124 (278)
-.+|||+-|||.|
T Consensus 40 ~~~l~L~eDGTeV 52 (77)
T cd06535 40 GSRLCLYEDGTEV 52 (77)
T ss_pred CcEEEEecCCcEe
Confidence 3589999999999
No 238
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=21.24 E-value=1.1e+02 Score=27.46 Aligned_cols=67 Identities=24% Similarity=0.384 Sum_probs=40.3
Q ss_pred CCCCCCeEEEEeCCCceeeccCCCCCCCCceEEeeccCCceeeEEEEeCcCHHHHH------HHHhhcceEEEEcCCchH
Q 044274 107 LISPDKKTIFLDLDETLIHSKPDPPPERFDFIVRPRIDGEVLNFYVLKRPGVDAFL------DAISKKYEVVVFTAGLKE 180 (278)
Q Consensus 107 ~~~~~KktLVLDLDeTLIhs~~~~~~~~~Df~v~~~~~~~~~~~~v~~RP~l~eFL------~~l~~~fEIvI~Taa~~~ 180 (278)
++.+...++-+|+|+|++.++..--. |+ -+.-|+-+.|| +.+..-.+= -+-.++
T Consensus 58 LeG~~Pi~VsFDIDDTvLFsSp~F~~------------Gk-----~~~sPgs~DyLknq~FW~~vn~g~D~---~SIPKe 117 (237)
T COG3700 58 LEGRPPIAVSFDIDDTVLFSSPGFWR------------GK-----KYFSPGSEDYLKNQVFWEKVNNGWDE---FSIPKE 117 (237)
T ss_pred hcCCCCeeEeeccCCeeEeccccccc------------Cc-----cccCCChHHhhcCHHHHHHHhcCCcc---ccchHH
Confidence 34456778899999999998643110 10 02356666555 444433221 123688
Q ss_pred HHHHHHHHhCCCC
Q 044274 181 YASLLLNRLDRNG 193 (278)
Q Consensus 181 YA~~vl~~LDp~~ 193 (278)
||.++++.=...|
T Consensus 118 vA~qLI~MHq~RG 130 (237)
T COG3700 118 VARQLIDMHQRRG 130 (237)
T ss_pred HHHHHHHHHHhcC
Confidence 9999888766655
Done!