BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>044275
MKGPRVVAVAQKKPHADMLKARKAENKPKKEKAGKKKDSNAPKRPLSAYFIFMEDFRKSF
KESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYELALEAYKKQLNDNGAG
VSEDSWKSTSEVQSGKSSSSEINDEAEQEFSSQVSSYFMGFYCFSSRN

High Scoring Gene Products

Symbol, full name Information P value
HMGB2
high mobility group B2 		protein from Arabidopsis thaliana 8.7e-24
HMGB4
high mobility group B4 		protein from Arabidopsis thaliana 5.1e-19
HMGB5
high mobility group B5 		protein from Arabidopsis thaliana 5.1e-19
HMGB6
high-mobility group box 6 		protein from Arabidopsis thaliana 3.3e-15
HMGB3
High mobility group protein B3 		protein from Bos taurus 3.1e-12
hmgb1a
high-mobility group box 1a 		gene_product from Danio rerio 3.9e-12
LOC100517745
Uncharacterized protein 		protein from Sus scrofa 6.4e-12
LOC532409
Uncharacterized protein 		protein from Bos taurus 8.2e-12
Hmgb3
high mobility group box 3 		protein from Mus musculus 1.0e-11
Hmgb3
high mobility group box 3 		gene from Rattus norvegicus 1.0e-11
HMGB3
High mobility group protein B3 		protein from Homo sapiens 1.3e-11
HMGB3
High mobility group protein B3 		protein from Gallus gallus 1.7e-11
HMGB3
High mobility group protein B3 		protein from Homo sapiens 2.2e-11
HMGB3
High mobility group protein B3 		protein from Homo sapiens 2.2e-11
HMGB3
Uncharacterized protein 		protein from Canis lupus familiaris 2.8e-11
RGD1559962
similar to High mobility group protein 2 (HMG-2) 		gene from Rattus norvegicus 3.5e-11
HMGB1
High mobility group protein B1 		protein from Gallus gallus 4.5e-11
HMGB2
High mobility group protein B2 		protein from Bos taurus 7.4e-11
HMGB2
High mobility group protein B2 		protein from Homo sapiens 7.4e-11
LOC618297
Uncharacterized protein 		protein from Bos taurus 7.4e-11
RGD1564519
similar to High mobility group protein 2 (HMG-2) 		gene from Rattus norvegicus 9.4e-11
Hmgb2
high mobility group box 2 		gene from Rattus norvegicus 9.4e-11
HMGB2
High mobility group protein B2 		protein from Gallus gallus 9.4e-11
HMGB1
High mobility group protein B1 		protein from Gallus gallus 9.4e-11
HMG1
High mobility group 1 protein 		protein from Gallus gallus 9.4e-11
RGD1561694
similar to High mobility group protein 2 (HMG-2) 		gene from Rattus norvegicus 1.2e-10
HMGB2
Uncharacterized protein 		protein from Canis lupus familiaris 2.0e-10
LOC680968
similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30) 		gene from Rattus norvegicus 2.0e-10
P0C6E5
Putative high mobility group protein B3-like protein 		protein from Homo sapiens 2.0e-10
HMGB2
High mobility group protein B2 		protein from Sus scrofa 2.5e-10
MAL8P1.72
high mobility group protein, putative 		gene from Plasmodium falciparum 2.5e-10
PfHMGB2
High mobility group protein 		protein from Plasmodium falciparum 3D7 2.5e-10
HMGB2
High mobility group protein B2 		protein from Gallus gallus 4.1e-10
LOC691220
hypothetical protein LOC691220 		gene from Rattus norvegicus 4.1e-10
LOC679451
similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30) 		gene from Rattus norvegicus 4.1e-10
LOC681718
similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30) 		gene from Rattus norvegicus 4.1e-10
Hmgb1
high mobility group box 1 		gene from Rattus norvegicus 4.1e-10
HMGB1
High mobility group protein B1 		protein from Cricetulus griseus 4.1e-10
HMGB1
High mobility group protein B1 		protein from Bos taurus 5.2e-10
HMGB1
High mobility group protein B1 		protein from Canis lupus familiaris 5.2e-10
HMGB1
High mobility group protein B1 		protein from Homo sapiens 5.2e-10
HMGB1
High mobility group protein B1 		protein from Sus scrofa 5.2e-10
Hmgb4
high-mobility group box 4 		protein from Mus musculus 5.2e-10
LOC690940
similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30) 		gene from Rattus norvegicus 6.6e-10
LOC689398
similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30) 		gene from Rattus norvegicus 6.6e-10
HMGB1
High mobility group protein B1 		protein from Sus scrofa 6.6e-10
LOC678705
hypothetical protein LOC678705 		gene from Rattus norvegicus 6.6e-10
E1BMK2
Uncharacterized protein 		protein from Bos taurus 6.6e-10
Hmgb2
high mobility group box 2 		protein from Mus musculus 8.4e-10
Hmg1l1
Protein Hmg1l1 		protein from Rattus norvegicus 8.4e-10
HMGB3
High mobility group protein B3 		protein from Homo sapiens 1.1e-09
NHP6A
High-mobility group (HMG) protein, binds to and remodels nucleosomes 		gene from Saccharomyces cerevisiae 1.1e-09
3xHMG-box1
3xHigh Mobility Group-box1 		protein from Arabidopsis thaliana 1.1e-09
HMGB4
High mobility group protein B4 		protein from Bos taurus 1.4e-09
HMGB4
High mobility group protein B4 		protein from Homo sapiens 1.8e-09
PFL0145c
high mobility group protein 		gene from Plasmodium falciparum 1.8e-09
HMGB1
High mobility group protein 		protein from Plasmodium falciparum 3D7 1.8e-09
hmg-3 gene from Caenorhabditis elegans 2.2e-09
SSRP1
Uncharacterized protein 		protein from Canis lupus familiaris 3.8e-09
3xHMG-box2
3xHigh Mobility Group-box2 		protein from Arabidopsis thaliana 4.1e-09
Hmg1l1
high-mobility group (nonhistone chromosomal) protein 1-like 1 		gene from Rattus norvegicus 4.7e-09
HmgZ
HMG protein Z 		protein from Drosophila melanogaster 4.7e-09
NHP6B
High-mobility group (HMG) protein, binds to and remodels nucleosomes 		gene from Saccharomyces cerevisiae 5.9e-09
SSRP1
FACT complex subunit SSRP1 		protein from Gallus gallus 6.2e-09
SSRP1
FACT complex subunit SSRP1 		protein from Gallus gallus 6.2e-09
Ssrp1
structure specific recognition protein 1 		protein from Mus musculus 6.2e-09
SSRP1
Uncharacterized protein 		protein from Bos taurus 6.2e-09
Ssrp1
structure specific recognition protein 1 		gene from Rattus norvegicus 6.2e-09
SSRP1
Uncharacterized protein 		protein from Canis lupus familiaris 7.1e-09
MGG_04489
Non-histone chromosomal protein 6 		protein from Magnaporthe oryzae 70-15 7.6e-09
SSRP1
Uncharacterized protein 		protein from Sus scrofa 8.0e-09
HMGB1
High mobility group protein B1 		protein from Canis lupus familiaris 9.7e-09
HMGB1
High mobility group protein B1 		protein from Homo sapiens 9.7e-09
hmg-4 gene from Caenorhabditis elegans 1.3e-08
LOC679344
similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30) 		gene from Rattus norvegicus 1.4e-08
LOC685520
similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30) 		gene from Rattus norvegicus 1.4e-08
SSRP1
FACT complex subunit SSRP1 		protein from Homo sapiens 1.7e-08
RGD1563668
similar to High mobility group protein 1 (HMG-1) 		gene from Rattus norvegicus 1.7e-08
nhp6
HMG1/2 (high mobility group) box-containing protein 		gene from Dictyostelium discoideum 2.6e-08
NHP6A gene_product from Candida albicans 3.3e-08
HmgD
High mobility group protein D 		protein from Drosophila melanogaster 3.3e-08
NHP6
Non-histone chromosomal protein 6 		protein from Candida albicans SC5314 3.3e-08
HMGB1P1
Putative high mobility group protein B1-like 1 		protein from Homo sapiens 5.1e-08
ssrp1b
structure specific recognition protein 1b 		gene_product from Danio rerio 5.7e-08
ssrp1a
structure specific recognition protein 1a 		gene_product from Danio rerio 5.7e-08
E1BIF8
Uncharacterized protein 		protein from Bos taurus 6.8e-08
Hmgb1-ps3
high mobility group box 1, pseudogene 3 		gene from Rattus norvegicus 1.2e-07
ABF2
Mitochondrial DNA-binding protein 		gene from Saccharomyces cerevisiae 1.4e-07
RGD1560584
similar to High mobility group protein 1 (HMG-1) 		gene from Rattus norvegicus 1.7e-07
IXR1
Protein that binds DNA intrastrand cross-links formed by cisplatin 		gene from Saccharomyces cerevisiae 2.0e-07
ssrp1
FACT complex subunit SSRP1 		protein from Xenopus laevis 2.5e-07
hmgb3b
high-mobility group box 3b 		gene_product from Danio rerio 2.6e-07
HMGB2
High mobility group protein B2 		protein from Homo sapiens 2.9e-07
HMO1 gene_product from Candida albicans 4.4e-07
HMO1
Potential HMG-like DNA binding protein Hmo1p 		protein from Candida albicans SC5314 4.4e-07
TOX3
Uncharacterized protein 		protein from Sus scrofa 4.7e-07

The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  044275
        (168 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:505006135 - symbol:HMGB2 "high mobility group ...   273  8.7e-24   1
TAIR|locus:2053893 - symbol:HMGB4 "high mobility group B4...   228  5.1e-19   1
TAIR|locus:2128003 - symbol:HMGB5 "high mobility group B5...   228  5.1e-19   1
TAIR|locus:2154433 - symbol:HMGB6 "high-mobility group bo...   192  3.3e-15   1
UNIPROTKB|Q32L31 - symbol:HMGB3 "High mobility group prot...   164  3.1e-12   1
ZFIN|ZDB-GENE-030131-341 - symbol:hmgb1a "high-mobility g...   163  3.9e-12   1
UNIPROTKB|F1RQ19 - symbol:LOC100517745 "Uncharacterized p...   161  6.4e-12   1
UNIPROTKB|E1BIU3 - symbol:LOC532409 "Uncharacterized prot...   160  8.2e-12   1
MGI|MGI:1098219 - symbol:Hmgb3 "high mobility group box 3...   159  1.0e-11   1
RGD|1564407 - symbol:Hmgb3 "high mobility group box 3" sp...   159  1.0e-11   1
UNIPROTKB|O15347 - symbol:HMGB3 "High mobility group prot...   158  1.3e-11   1
UNIPROTKB|P40618 - symbol:HMGB3 "High mobility group prot...   157  1.7e-11   1
UNIPROTKB|E7EQU1 - symbol:HMGB3 "High mobility group prot...   156  2.2e-11   1
UNIPROTKB|E7ES08 - symbol:HMGB3 "High mobility group prot...   156  2.2e-11   1
UNIPROTKB|J9NVS3 - symbol:HMGB3 "Uncharacterized protein"...   155  2.8e-11   1
ASPGD|ASPL0000037691 - symbol:AN2885 species:162425 "Emer...   155  2.8e-11   1
RGD|1559962 - symbol:RGD1559962 "similar to High mobility...   154  3.5e-11   1
UNIPROTKB|P36194 - symbol:HMGB1 "High mobility group prot...   153  4.5e-11   1
UNIPROTKB|P40673 - symbol:HMGB2 "High mobility group prot...   151  7.4e-11   1
UNIPROTKB|P26583 - symbol:HMGB2 "High mobility group prot...   151  7.4e-11   1
UNIPROTKB|F1MF42 - symbol:LOC618297 "Uncharacterized prot...   151  7.4e-11   1
RGD|1564519 - symbol:RGD1564519 "similar to High mobility...   150  9.4e-11   1
RGD|69291 - symbol:Hmgb2 "high mobility group box 2" spec...   150  9.4e-11   1
UNIPROTKB|F1NPU8 - symbol:HMGB2 "High mobility group prot...   150  9.4e-11   1
UNIPROTKB|F1N927 - symbol:HMGB1 "High mobility group prot...   150  9.4e-11   1
UNIPROTKB|Q9YH06 - symbol:HMG1 "High mobility group 1 pro...   150  9.4e-11   1
RGD|1561694 - symbol:RGD1561694 "similar to High mobility...   149  1.2e-10   1
UNIPROTKB|E2QY30 - symbol:HMGB2 "Uncharacterized protein"...   147  2.0e-10   1
RGD|1585821 - symbol:LOC680968 "similar to High mobility ...   147  2.0e-10   1
UNIPROTKB|P0C6E5 - symbol:P0C6E5 "Putative high mobility ...   147  2.0e-10   1
UNIPROTKB|P17741 - symbol:HMGB2 "High mobility group prot...   146  2.5e-10   1
GENEDB_PFALCIPARUM|MAL8P1.72 - symbol:MAL8P1.72 "high mob...   146  2.5e-10   1
UNIPROTKB|Q8IB14 - symbol:PfHMGB2 "High mobility group pr...   146  2.5e-10   1
UNIPROTKB|P26584 - symbol:HMGB2 "High mobility group prot...   144  4.1e-10   1
RGD|1586285 - symbol:LOC691220 "hypothetical protein LOC6...   144  4.1e-10   1
RGD|1588313 - symbol:LOC679451 "similar to High mobility ...   144  4.1e-10   1
RGD|1591683 - symbol:LOC681718 "similar to High mobility ...   144  4.1e-10   1
RGD|2802 - symbol:Hmgb1 "high mobility group box 1" speci...   144  4.1e-10   1
UNIPROTKB|P07156 - symbol:HMGB1 "High mobility group prot...   144  4.1e-10   1
UNIPROTKB|P10103 - symbol:HMGB1 "High mobility group prot...   143  5.2e-10   1
UNIPROTKB|Q6YKA4 - symbol:HMGB1 "High mobility group prot...   143  5.2e-10   1
UNIPROTKB|P09429 - symbol:HMGB1 "High mobility group prot...   143  5.2e-10   1
UNIPROTKB|F2Z594 - symbol:HMGB1 "High mobility group prot...   143  5.2e-10   1
MGI|MGI:1916567 - symbol:Hmgb4 "high-mobility group box 4...   143  5.2e-10   1
RGD|1589841 - symbol:LOC690940 "similar to High mobility ...   142  6.6e-10   1
RGD|1593466 - symbol:LOC689398 "similar to High mobility ...   142  6.6e-10   1
UNIPROTKB|P12682 - symbol:HMGB1 "High mobility group prot...   142  6.6e-10   1
RGD|1596979 - symbol:LOC678705 "hypothetical protein LOC6...   142  6.6e-10   1
UNIPROTKB|E1BMK2 - symbol:E1BMK2 "Uncharacterized protein...   142  6.6e-10   1
MGI|MGI:96157 - symbol:Hmgb2 "high mobility group box 2" ...   141  8.4e-10   1
UNIPROTKB|D4A9T3 - symbol:D4A9T3 "Uncharacterized protein...   141  8.4e-10   1
UNIPROTKB|E9PES6 - symbol:HMGB3 "High mobility group prot...   140  1.1e-09   1
SGD|S000006256 - symbol:NHP6A "High-mobility group (HMG) ...   140  1.1e-09   1
TAIR|locus:2136103 - symbol:3xHMG-box1 "3xHigh Mobility G...   148  1.1e-09   1
UNIPROTKB|Q32L34 - symbol:HMGB4 "High mobility group prot...   139  1.4e-09   1
UNIPROTKB|Q8WW32 - symbol:HMGB4 "High mobility group prot...   138  1.8e-09   1
GENEDB_PFALCIPARUM|PFL0145c - symbol:PFL0145c "high mobil...   138  1.8e-09   1
UNIPROTKB|Q8I616 - symbol:HMGB1 "High mobility group prot...   138  1.8e-09   1
WB|WBGene00001973 - symbol:hmg-3 species:6239 "Caenorhabd...   148  2.2e-09   1
UNIPROTKB|F1Q2J2 - symbol:SSRP1 "Uncharacterized protein"...   146  3.8e-09   1
TAIR|locus:2128504 - symbol:3xHMG-box2 "3xHigh Mobility G...   143  4.1e-09   1
RGD|1587112 - symbol:Hmg1l1 "high-mobility group (nonhist...   134  4.7e-09   1
FB|FBgn0010228 - symbol:HmgZ "HMG protein Z" species:7227...   134  4.7e-09   1
SGD|S000002157 - symbol:NHP6B "High-mobility group (HMG) ...   133  5.9e-09   1
UNIPROTKB|B6ZLK1 - symbol:SSRP1 "Structure-specific recog...   144  6.2e-09   1
UNIPROTKB|Q04678 - symbol:SSRP1 "FACT complex subunit SSR...   144  6.2e-09   1
MGI|MGI:107912 - symbol:Ssrp1 "structure specific recogni...   144  6.2e-09   1
UNIPROTKB|F6QYV9 - symbol:SSRP1 "Uncharacterized protein"...   144  6.2e-09   1
RGD|621143 - symbol:Ssrp1 "structure specific recognition...   144  6.2e-09   1
UNIPROTKB|Q04931 - symbol:Ssrp1 "FACT complex subunit SSR...   144  6.2e-09   1
UNIPROTKB|J9NYX4 - symbol:SSRP1 "Uncharacterized protein"...   142  7.1e-09   1
UNIPROTKB|G4MS97 - symbol:MGG_04489 "Non-histone chromoso...   132  7.6e-09   1
UNIPROTKB|I3LLA8 - symbol:SSRP1 "Uncharacterized protein"...   143  8.0e-09   1
UNIPROTKB|J9P699 - symbol:HMGB1 "High mobility group prot...   131  9.7e-09   1
UNIPROTKB|Q5T7C4 - symbol:HMGB1 "High mobility group prot...   131  9.7e-09   1
WB|WBGene00001974 - symbol:hmg-4 species:6239 "Caenorhabd...   141  1.3e-08   1
RGD|1589528 - symbol:LOC679344 "similar to High mobility ...   130  1.4e-08   1
RGD|1592627 - symbol:LOC685520 "similar to High mobility ...   130  1.4e-08   1
UNIPROTKB|Q08945 - symbol:SSRP1 "FACT complex subunit SSR...   140  1.7e-08   1
RGD|1563668 - symbol:RGD1563668 "similar to High mobility...   129  1.7e-08   1
POMBASE|SPAC57A10.09c - symbol:nhp6 "High-mobility group ...   128  2.0e-08   1
DICTYBASE|DDB_G0270260 - symbol:nhp6 "HMG1/2 (high mobili...   127  2.6e-08   1
CGD|CAF0007020 - symbol:NHP6A species:5476 "Candida albic...   126  3.3e-08   1
FB|FBgn0004362 - symbol:HmgD "High mobility group protein...   126  3.3e-08   1
UNIPROTKB|Q9UVL1 - symbol:NHP6 "Non-histone chromosomal p...   126  3.3e-08   1
UNIPROTKB|B2RPK0 - symbol:HMGB1P1 "Putative high mobility...   125  5.1e-08   1
ZFIN|ZDB-GENE-041008-209 - symbol:ssrp1b "structure speci...   135  5.7e-08   1
ZFIN|ZDB-GENE-031118-9 - symbol:ssrp1a "structure specifi...   135  5.7e-08   1
UNIPROTKB|E1BIF8 - symbol:E1BIF8 "Uncharacterized protein...   123  6.8e-08   1
UNIPROTKB|F1NLS2 - symbol:TFAM "Uncharacterized protein" ...   127  7.0e-08   1
RGD|1588759 - symbol:Hmgb1-ps3 "high mobility group box 1...   122  1.2e-07   1
SGD|S000004676 - symbol:ABF2 "Mitochondrial DNA-binding p...   120  1.4e-07   1
RGD|1560584 - symbol:RGD1560584 "similar to High mobility...   120  1.7e-07   1
SGD|S000001515 - symbol:IXR1 "Protein that binds DNA intr...   129  2.0e-07   1
UNIPROTKB|Q9W602 - symbol:ssrp1 "FACT complex subunit SSR...   129  2.5e-07   1
ZFIN|ZDB-GENE-050417-290 - symbol:hmgb3b "high-mobility g...   118  2.6e-07   1
UNIPROTKB|D6R9A6 - symbol:HMGB2 "High mobility group prot...   117  2.9e-07   1
CGD|CAL0004040 - symbol:HMO1 species:5476 "Candida albica...   118  4.4e-07   1
UNIPROTKB|Q59PR9 - symbol:HMO1 "Potential HMG-like DNA bi...   118  4.4e-07   1
UNIPROTKB|F1REZ8 - symbol:TOX3 "Uncharacterized protein" ...   125  4.7e-07   1

WARNING:  Descriptions of 173 database sequences were not reported due to the
          limiting value of parameter V = 100.


>TAIR|locus:505006135 [details] [associations]
            symbol:HMGB2 "high mobility group B2" species:3702
            "Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=ISS] [GO:0000785 "chromatin" evidence=TAS]
            [GO:0003682 "chromatin binding" evidence=TAS] [GO:0006333
            "chromatin assembly or disassembly" evidence=RCA;TAS] [GO:0030527
            "structural constituent of chromatin" evidence=TAS] [GO:0006096
            "glycolysis" evidence=RCA] [GO:0006833 "water transport"
            evidence=RCA] [GO:0006972 "hyperosmotic response" evidence=RCA]
            [GO:0007030 "Golgi organization" evidence=RCA] [GO:0009266
            "response to temperature stimulus" evidence=RCA] [GO:0009651
            "response to salt stress" evidence=RCA] [GO:0046686 "response to
            cadmium ion" evidence=RCA] [GO:0003677 "DNA binding"
            evidence=ISS;IDA] InterPro:IPR009071 Pfam:PF00505 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005634 GO:GO:0003677
            GO:GO:0000785 EMBL:AC069251 GO:GO:0003700 GO:GO:0003682
            eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0006333 HSSP:P07155 EMBL:Y14072 EMBL:AF370248
            EMBL:AY063064 EMBL:AK118543 EMBL:AB493468 EMBL:AY084731
            IPI:IPI00532636 IPI:IPI00657279 IPI:IPI00846437 PIR:F86339
            PIR:T51597 RefSeq:NP_001031074.1 RefSeq:NP_001077569.1
            RefSeq:NP_564123.1 UniGene:At.21298 ProteinModelPortal:O49596
            SMR:O49596 STRING:O49596 PaxDb:O49596 PRIDE:O49596
            EnsemblPlants:AT1G20693.1 GeneID:838658 KEGG:ath:AT1G20693
            TAIR:At1g20693 HOGENOM:HOG000197860 InParanoid:O49596 OMA:YVAKANK
            PhylomeDB:O49596 ProtClustDB:CLSN2687884 Genevestigator:O49596
            GO:GO:0030527 Uniprot:O49596
        Length = 144

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 58/116 (50%), Positives = 76/116 (65%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D N PKRP SA+F+FMEDFR++FK+  P NKSVA +GKA G KWKS+S++EKAPYV KA 
Sbjct:    34 DPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAE 93

Query:    98 NKKAEYELALEAYKKQLNDNGAGVSEDSWKXXXXXXXXXXXXXEINDEAEQEFSSQ 153
              +K EYE  ++AY K+L + G    E+S K             E+NDE + E  S+
Sbjct:    94 KRKVEYEKNIKAYNKKLEE-GPKEDEESDKSVS----------EVNDEDDAEDGSE 138


>TAIR|locus:2053893 [details] [associations]
            symbol:HMGB4 "high mobility group B4" species:3702
            "Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=ISS] [GO:0000785 "chromatin" evidence=TAS]
            [GO:0003682 "chromatin binding" evidence=TAS] [GO:0006333
            "chromatin assembly or disassembly" evidence=RCA;TAS] [GO:0030527
            "structural constituent of chromatin" evidence=TAS] [GO:0005737
            "cytoplasm" evidence=IDA] [GO:0006084 "acetyl-CoA metabolic
            process" evidence=RCA] [GO:0006342 "chromatin silencing"
            evidence=RCA] [GO:0006364 "rRNA processing" evidence=RCA]
            [GO:0008283 "cell proliferation" evidence=RCA] [GO:0016572 "histone
            phosphorylation" evidence=RCA] [GO:0051567 "histone H3-K9
            methylation" evidence=RCA] [GO:0003677 "DNA binding"
            evidence=ISS;IDA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005829
            GO:GO:0005634 GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR
            GO:GO:0003677 GO:GO:0000785 GO:GO:0003700 GO:GO:0003682
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0006333 EMBL:AC007584 HOGENOM:HOG000197860 GO:GO:0030527
            eggNOG:NOG320947 EMBL:Y14074 EMBL:F20020 EMBL:AF370150
            EMBL:AF370562 EMBL:AY150467 EMBL:AK317044 EMBL:AY086336
            IPI:IPI00516334 IPI:IPI00656969 PIR:F84553 PIR:T51596
            RefSeq:NP_001031364.2 RefSeq:NP_001077909.1 RefSeq:NP_179347.1
            UniGene:At.481 HSSP:P11632 ProteinModelPortal:Q42344 SMR:Q42344
            STRING:Q42344 PaxDb:Q42344 PRIDE:Q42344 EnsemblPlants:AT2G17560.1
            EnsemblPlants:AT2G17560.2 GeneID:816263 KEGG:ath:AT2G17560
            TAIR:At2g17560 InParanoid:Q42344 OMA:LANPNNK PhylomeDB:Q42344
            ProtClustDB:CLSN2683898 Genevestigator:Q42344 Uniprot:Q42344
        Length = 138

 Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 44/87 (50%), Positives = 61/87 (70%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D N PKRP SA+F+F+EDFRK F  + P+NKSVA +GKA G +WK+M++ +KAPYV KA 
Sbjct:    31 DPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATVGKAAGARWKAMTDEDKAPYVAKAE 90

Query:    98 NKKAEYELALEAYKKQLNDNGAGVSED 124
             ++K EY   ++ Y  +L  +G    ED
Sbjct:    91 SRKTEYIKNVQQYNLKLA-SGTNREED 116


>TAIR|locus:2128003 [details] [associations]
            symbol:HMGB5 "high mobility group B5" species:3702
            "Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=ISS] [GO:0000785 "chromatin" evidence=TAS]
            [GO:0003682 "chromatin binding" evidence=TAS] [GO:0006333
            "chromatin assembly or disassembly" evidence=RCA;TAS] [GO:0030527
            "structural constituent of chromatin" evidence=TAS] [GO:0005737
            "cytoplasm" evidence=IDA] [GO:0003677 "DNA binding"
            evidence=ISS;IDA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
            GO:GO:0005737 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677
            GO:GO:0000785 GO:GO:0003700 GO:GO:0003682 eggNOG:COG5648
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0006333 EMBL:AL161587 EMBL:AL031135 HOGENOM:HOG000197860
            GO:GO:0030527 HSSP:P11632 EMBL:Y14075 EMBL:AK317173 EMBL:BT025597
            EMBL:AY085615 IPI:IPI00535971 PIR:T04662 RefSeq:NP_195282.1
            UniGene:At.482 ProteinModelPortal:O49597 SMR:O49597 STRING:O49597
            PaxDb:O49597 PRIDE:O49597 EnsemblPlants:AT4G35570.1 GeneID:829709
            KEGG:ath:AT4G35570 TAIR:At4g35570 InParanoid:O49597 OMA:YNMELAN
            PhylomeDB:O49597 ProtClustDB:CLSN2916185 Genevestigator:O49597
            Uniprot:O49597
        Length = 125

 Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 39/87 (44%), Positives = 60/87 (68%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D N PK+P S +F+F++DFRK F  + PDNKSV  +G+A G+KWK+M+E E+AP+V K+ 
Sbjct:    30 DPNRPKKPPSPFFVFLDDFRKEFNLANPDNKSVGNVGRAAGKKWKTMTEEERAPFVAKSQ 89

Query:    98 NKKAEYELALEAYKKQLNDNGAGVSED 124
             +KK EY + ++ Y  +L +      +D
Sbjct:    90 SKKTEYAVTMQQYNMELANGNKTTGDD 116


>TAIR|locus:2154433 [details] [associations]
            symbol:HMGB6 "high-mobility group box 6" species:3702
            "Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=ISS] [GO:0003677 "DNA binding" evidence=IDA]
            [GO:0006261 "DNA-dependent DNA replication" evidence=RCA]
            InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0003700
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            HSSP:P07155 EMBL:AB018110 HOGENOM:HOG000242532 EMBL:AK118688
            EMBL:AY086023 IPI:IPI00542717 RefSeq:NP_568431.1 UniGene:At.31011
            ProteinModelPortal:Q8LDF9 SMR:Q8LDF9 STRING:Q8LDF9 PaxDb:Q8LDF9
            PRIDE:Q8LDF9 EnsemblPlants:AT5G23420.1 GeneID:832408
            KEGG:ath:AT5G23420 TAIR:At5g23420 eggNOG:NOG297541
            InParanoid:Q8LDF9 OMA:AFFLFMD PhylomeDB:Q8LDF9
            ProtClustDB:CLSN2689854 Genevestigator:Q8LDF9 Uniprot:Q8LDF9
        Length = 241

 Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
 Identities = 48/112 (42%), Positives = 62/112 (55%)

Query:    39 SNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAA-MGKAGGQKWKSMSEAEKAPYVQKAL 97
             SN PKRPL+A+FIFM DFRK+FK     N S+A    K GG+KWKS++E EK  Y+ KA 
Sbjct:   112 SNKPKRPLTAFFIFMSDFRKTFKSEH--NGSLAKDAAKIGGEKWKSLTEEEKKVYLDKAA 169

Query:    98 NKKAEYELALEAYKKQLNDNGAGVSEDSWKXXXXXXXXXXXXXEINDEAEQE 149
               KAEY  +LE+     ND      ED  K             + +DE E++
Sbjct:   170 ELKAEYNKSLES-----NDADEE-EEDEEKQSDDVDDAEEKQVDDDDEVEEK 215


>UNIPROTKB|Q32L31 [details] [associations]
            symbol:HMGB3 "High mobility group protein B3" species:9913
            "Bos taurus" [GO:0003690 "double-stranded DNA binding"
            evidence=IDA] [GO:0008301 "DNA binding, bending" evidence=IDA]
            [GO:0006310 "DNA recombination" evidence=IDA] [GO:0005694
            "chromosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
            GO:GO:0005634 GO:GO:0005694 GO:GO:0008301 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006310
            GO:GO:0003690 Pfam:PF09011 HSSP:P48431 HOGENOM:HOG000197861
            GeneTree:ENSGT00560000076717 HOVERGEN:HBG009000 OrthoDB:EOG4TTGK2
            eggNOG:NOG320947 EMBL:BC109793 IPI:IPI00883385
            RefSeq:NP_001069753.2 RefSeq:NP_001106728.1 UniGene:Bt.62966
            ProteinModelPortal:Q32L31 SMR:Q32L31 Ensembl:ENSBTAT00000005793
            Ensembl:ENSBTAT00000006785 GeneID:613729 KEGG:bta:613729 CTD:3149
            InParanoid:Q32L31 KO:K11296 OMA:DNEKQPY NextBio:20898733
            ArrayExpress:Q32L31 Uniprot:Q32L31
        Length = 200

 Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 38/113 (33%), Positives = 58/113 (51%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NAPKRP S +F+F  +FR   K + P   S+  + K  G+ W ++S++EK PY+ KA 
Sbjct:    89 DPNAPKRPPSGFFLFCSEFRPKIKSANP-GISIGDVAKKLGEMWNNLSDSEKQPYINKAA 147

Query:    98 NKKAEYELALEAYKKQLNDNGA-GVSEDSWKXXXXXXXXXXXXXEINDEAEQE 149
               K +YE  +  YK +   +GA G ++ + K             E  +E E E
Sbjct:   148 KLKEKYEKDVADYKSKGKFDGAKGAAKVARKKVEEEDEEDEEEEEEEEEEEDE 200

 Score = 98 (39.6 bits), Expect = 0.00024, P = 0.00024
 Identities = 22/74 (29%), Positives = 38/74 (51%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNK-SVAAMGKAGGQKWKSMSEAEKAPYVQKA 96
             D   PK  +SAY  F++  R+  K+  P+   + A   K   ++WK+MS  EK+ + + A
Sbjct:     5 DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMA 64

Query:    97 LNKKAEYELALEAY 110
                K  Y+  ++ Y
Sbjct:    65 KADKVRYDREMKDY 78


>ZFIN|ZDB-GENE-030131-341 [details] [associations]
            symbol:hmgb1a "high-mobility group box 1a"
            species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0009409 "response to cold"
            evidence=IDA] [GO:0030900 "forebrain development" evidence=IMP]
            [GO:0005886 "plasma membrane" evidence=IDA] InterPro:IPR009071
            InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
            ZFIN:ZDB-GENE-030131-341 GO:GO:0005886 GO:GO:0005634 GO:GO:0003677
            GO:GO:0009409 GO:GO:0030900 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011 HSSP:P07155
            HOVERGEN:HBG009000 EMBL:BC045917 IPI:IPI00489314 UniGene:Dr.150247
            UniGene:Dr.158952 ProteinModelPortal:Q7ZVC6 SMR:Q7ZVC6 PRIDE:Q7ZVC6
            ArrayExpress:Q7ZVC6 Bgee:Q7ZVC6 Uniprot:Q7ZVC6
        Length = 205

 Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 38/112 (33%), Positives = 52/112 (46%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NAPKRP SA+FIF  +FR   KE  P   S+  + K  G+ W  +S  EK PY +KA 
Sbjct:    90 DPNAPKRPPSAFFIFCSEFRPKVKEETP-GLSIGDVAKRLGEMWNKISSEEKQPYEKKAA 148

Query:    98 NKKAEYELALEAYKKQLNDNGAGVSEDSWKXXXXXXXXXXXXXEINDEAEQE 149
               K +YE  + AY+ +    G      S               E  D+ ++E
Sbjct:   149 KLKEKYEKDIAAYRSKGKVGGGAAKAPSKPDKANDEDEDDDEEEDEDDDDEE 200

 Score = 97 (39.2 bits), Expect = 0.00042, P = 0.00042
 Identities = 21/74 (28%), Positives = 37/74 (50%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPD-NKSVAAMGKAGGQKWKSMSEAEKAPYVQKA 96
             D   P+  +S+Y  F++  R+  K+  P+   + +   K   ++WK+MS  EK  +   A
Sbjct:     4 DPTKPRGKMSSYAYFVQTCREEHKKKHPEATVNFSEFSKKCSERWKTMSAKEKGKFEDMA 63

Query:    97 LNKKAEYELALEAY 110
                KA YE  ++ Y
Sbjct:    64 KLDKARYEREMKNY 77


>UNIPROTKB|F1RQ19 [details] [associations]
            symbol:LOC100517745 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
            PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            Pfam:PF09011 GeneTree:ENSGT00560000076717 KO:K11296 OMA:DNEKQPY
            EMBL:CU929821 RefSeq:XP_003135516.1 UniGene:Ssc.27311
            Ensembl:ENSSSCT00000013934 GeneID:100517745 KEGG:ssc:100517745
            Uniprot:F1RQ19
        Length = 202

 Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
 Identities = 37/113 (32%), Positives = 59/113 (52%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NAPKRP S +F+F  +FR   K + P   S+  + K  G+ W ++S++EK PY+ KA 
Sbjct:    89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDSEKQPYINKAA 147

Query:    98 NKKAEYELALEAYKKQLNDNGA-GVSEDSWKXXXXXXXXXXXXXEINDEAEQE 149
               K +YE  +  YK +   +GA G ++ + K             +  +E E+E
Sbjct:   148 KLKEKYEKDVADYKSKGKFDGAKGPAKVARKKVEEDDEDEDDDDDDEEEEEEE 200

 Score = 98 (39.6 bits), Expect = 0.00025, P = 0.00025
 Identities = 22/74 (29%), Positives = 38/74 (51%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNK-SVAAMGKAGGQKWKSMSEAEKAPYVQKA 96
             D   PK  +SAY  F++  R+  K+  P+   + A   K   ++WK+MS  EK+ + + A
Sbjct:     5 DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMA 64

Query:    97 LNKKAEYELALEAY 110
                K  Y+  ++ Y
Sbjct:    65 KADKVRYDREMKDY 78


>UNIPROTKB|E1BIU3 [details] [associations]
            symbol:LOC532409 "Uncharacterized protein" species:9913
            "Bos taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
            PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            Pfam:PF09011 GeneTree:ENSGT00560000076717 EMBL:DAAA02004182
            IPI:IPI00839111 RefSeq:XP_003585778.1 Ensembl:ENSBTAT00000044962
            GeneID:532409 KEGG:bta:532409 OMA:FLENTRC ArrayExpress:E1BIU3
            Uniprot:E1BIU3
        Length = 186

 Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
 Identities = 32/82 (39%), Positives = 48/82 (58%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NAPKRP S +F+F  +FR   K + P   S+  + K  G+ W ++S++EK PY+ KA 
Sbjct:    89 DPNAPKRPPSGFFLFCSEFRPKIKSANP-GISIGDVAKKLGEMWNNLSDSEKQPYINKAA 147

Query:    98 NKKAEYELALEAYKKQLNDNGA 119
               K +YE  +  YK +   +GA
Sbjct:   148 KLKEKYEKDVADYKSKGKFDGA 169

 Score = 96 (38.9 bits), Expect = 0.00049, P = 0.00049
 Identities = 22/74 (29%), Positives = 38/74 (51%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNK-SVAAMGKAGGQKWKSMSEAEKAPYVQKA 96
             D   PK  +SAY  F++  R+  K+  P+   + A   K   ++WK+MS  EK+ + + A
Sbjct:     5 DPKKPKGKMSAYSFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEIA 64

Query:    97 LNKKAEYELALEAY 110
                K  Y+  ++ Y
Sbjct:    65 KADKVRYDREMKDY 78


>MGI|MGI:1098219 [details] [associations]
            symbol:Hmgb3 "high mobility group box 3" species:10090 "Mus
            musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IDA] [GO:0005694 "chromosome" evidence=IEA]
            [GO:0045578 "negative regulation of B cell differentiation"
            evidence=IDA] [GO:0045638 "negative regulation of myeloid cell
            differentiation" evidence=IDA] InterPro:IPR009071
            InterPro:IPR017967 PROSITE:PS00353 MGI:MGI:1098219 Pfam:PF00505
            GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0045638
            Pfam:PF09011 GO:GO:0045578 HOGENOM:HOG000197861 HOVERGEN:HBG009000
            OrthoDB:EOG4TTGK2 eggNOG:NOG320947 CTD:3149 KO:K11296 EMBL:AF022465
            EMBL:BC011276 EMBL:BC083352 IPI:IPI00228879 RefSeq:NP_032279.1
            UniGene:Mm.336087 ProteinModelPortal:O54879 SMR:O54879
            STRING:O54879 PhosphoSite:O54879 PaxDb:O54879 PRIDE:O54879
            Ensembl:ENSMUST00000015361 Ensembl:ENSMUST00000072699
            Ensembl:ENSMUST00000088874 Ensembl:ENSMUST00000114582 GeneID:15354
            KEGG:mmu:15354 InParanoid:O54879 NextBio:287964 Bgee:O54879
            CleanEx:MM_HMGB3 Genevestigator:O54879
            GermOnline:ENSMUSG00000015217 Uniprot:O54879
        Length = 200

 Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 39/113 (34%), Positives = 57/113 (50%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NAPKRP S +F+F  +FR   K + P   S+  + K  G+ W ++S+ EK PYV KA 
Sbjct:    89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDNEKQPYVTKAA 147

Query:    98 NKKAEYELALEAYKKQLNDNGA-GVSEDSWKXXXXXXXXXXXXXEINDEAEQE 149
               K +YE  +  YK +   +GA G ++ + K             E  +E E E
Sbjct:   148 KLKEKYEKDVADYKSKGKFDGAKGPAKVARKKVEEEEEEEEEEEEEEEEEEDE 200

 Score = 100 (40.3 bits), Expect = 3.6e-05, P = 3.6e-05
 Identities = 22/74 (29%), Positives = 38/74 (51%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNK-SVAAMGKAGGQKWKSMSEAEKAPYVQKA 96
             D   PK  +SAY  F++  R+  K+  P+   + A   K   ++WK+MS  EK+ + + A
Sbjct:     5 DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKSKFDEMA 64

Query:    97 LNKKAEYELALEAY 110
                K  Y+  ++ Y
Sbjct:    65 KADKVRYDREMKDY 78


>RGD|1564407 [details] [associations]
            symbol:Hmgb3 "high mobility group box 3" species:10116 "Rattus
            norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA;ISO] [GO:0045578 "negative regulation of B
            cell differentiation" evidence=ISO] [GO:0045638 "negative
            regulation of myeloid cell differentiation" evidence=ISO]
            InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
            RGD:1564407 GO:GO:0005634 GO:GO:0003677 eggNOG:COG5648
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            Pfam:PF09011 HOGENOM:HOG000197861 GeneTree:ENSGT00560000076717
            HOVERGEN:HBG009000 OrthoDB:EOG4TTGK2 CTD:3149 KO:K11296 OMA:DNEKQPY
            EMBL:BC158739 EMBL:CH474187 IPI:IPI00955625 RefSeq:NP_001166812.1
            RefSeq:XP_003751731.1 UniGene:Rn.203482 SMR:B0BN99 STRING:B0BN99
            Ensembl:ENSRNOT00000015044 GeneID:100912369 GeneID:305373
            KEGG:rno:100912369 KEGG:rno:305373 NextBio:654455
            Genevestigator:B0BN99 Uniprot:B0BN99
        Length = 200

 Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 38/113 (33%), Positives = 58/113 (51%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NAPKRP S +F+F  +FR   K + P   S+  + K  G+ W ++S++EK PY+ KA 
Sbjct:    89 DPNAPKRPPSGFFLFCSEFRPKIKSANP-GISIGDVAKKLGEMWNNLSDSEKQPYMTKAA 147

Query:    98 NKKAEYELALEAYKKQLNDNGA-GVSEDSWKXXXXXXXXXXXXXEINDEAEQE 149
               K +YE  +  YK +   +GA G ++ + K             E  +E E E
Sbjct:   148 KLKEKYEKDVADYKSKGKFDGAKGPAKVARKKVEEEEEEEEEEEEEEEEEEDE 200

 Score = 100 (40.3 bits), Expect = 3.6e-05, P = 3.6e-05
 Identities = 22/74 (29%), Positives = 38/74 (51%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNK-SVAAMGKAGGQKWKSMSEAEKAPYVQKA 96
             D   PK  +SAY  F++  R+  K+  P+   + A   K   ++WK+MS  EK+ + + A
Sbjct:     5 DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKSKFDEMA 64

Query:    97 LNKKAEYELALEAY 110
                K  Y+  ++ Y
Sbjct:    65 KADKVRYDREMKDY 78


>UNIPROTKB|O15347 [details] [associations]
            symbol:HMGB3 "High mobility group protein B3" species:9606
            "Homo sapiens" [GO:0005634 "nucleus" evidence=IEA] [GO:0005694
            "chromosome" evidence=IEA] [GO:0006310 "DNA recombination"
            evidence=ISS] [GO:0003690 "double-stranded DNA binding"
            evidence=ISS] [GO:0008301 "DNA binding, bending" evidence=ISS]
            [GO:0007275 "multicellular organismal development" evidence=TAS]
            InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
            GO:GO:0007275 GO:GO:0005634 GO:GO:0005694 GO:GO:0008301
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0006310 GO:GO:0003690 Pfam:PF09011 HOGENOM:HOG000197861
            HOVERGEN:HBG009000 OrthoDB:EOG4TTGK2 eggNOG:NOG320947 CTD:3149
            KO:K11296 OMA:DNEKQPY EMBL:Y10043 EMBL:AF003626 EMBL:BC070482
            IPI:IPI00217477 RefSeq:NP_005333.2 UniGene:Hs.19114 PDB:2EQZ
            PDB:2YQI PDBsum:2EQZ PDBsum:2YQI ProteinModelPortal:O15347
            SMR:O15347 IntAct:O15347 STRING:O15347 PhosphoSite:O15347
            PaxDb:O15347 PeptideAtlas:O15347 PRIDE:O15347 DNASU:3149
            Ensembl:ENST00000325307 Ensembl:ENST00000448905 GeneID:3149
            KEGG:hsa:3149 UCSC:uc004fep.3 GeneCards:GC0XP150148 HGNC:HGNC:5004
            MIM:300193 neXtProt:NX_O15347 PharmGKB:PA35092 InParanoid:O15347
            PhylomeDB:O15347 EvolutionaryTrace:O15347 GenomeRNAi:3149
            NextBio:12480 ArrayExpress:O15347 Bgee:O15347 CleanEx:HS_HMGB3
            Genevestigator:O15347 GermOnline:ENSG00000029993 Uniprot:O15347
        Length = 200

 Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 37/113 (32%), Positives = 58/113 (51%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NAPKRP S +F+F  +FR   K + P   S+  + K  G+ W +++++EK PY+ KA 
Sbjct:    89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYITKAA 147

Query:    98 NKKAEYELALEAYKKQLNDNGA-GVSEDSWKXXXXXXXXXXXXXEINDEAEQE 149
               K +YE  +  YK +   +GA G ++ + K             E  +E E E
Sbjct:   148 KLKEKYEKDVADYKSKGKFDGAKGPAKVARKKVEEEDEEEEEEEEEEEEEEDE 200

 Score = 98 (39.6 bits), Expect = 0.00024, P = 0.00024
 Identities = 22/74 (29%), Positives = 38/74 (51%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNK-SVAAMGKAGGQKWKSMSEAEKAPYVQKA 96
             D   PK  +SAY  F++  R+  K+  P+   + A   K   ++WK+MS  EK+ + + A
Sbjct:     5 DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMA 64

Query:    97 LNKKAEYELALEAY 110
                K  Y+  ++ Y
Sbjct:    65 KADKVRYDREMKDY 78


>UNIPROTKB|P40618 [details] [associations]
            symbol:HMGB3 "High mobility group protein B3" species:9031
            "Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
            InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
            GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
            HOVERGEN:HBG009000 UniGene:Gga.4513 CTD:3149 KO:K11296 EMBL:X63463
            IPI:IPI00580706 PIR:S22359 RefSeq:NP_990626.2
            ProteinModelPortal:P40618 SMR:P40618 STRING:P40618 GeneID:396232
            KEGG:gga:396232 NextBio:20816284 Uniprot:P40618
        Length = 202

 Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 33/82 (40%), Positives = 47/82 (57%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NAPKRP SA+F+F  +FR   K + P   S+  + K  G+ W ++S+ EK PY  KA 
Sbjct:    89 DPNAPKRPPSAFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDGEKQPYNNKAA 147

Query:    98 NKKAEYELALEAYKKQLNDNGA 119
               K +YE  +  YK +   +GA
Sbjct:   148 KLKEKYEKDVADYKSKGKFDGA 169

 Score = 103 (41.3 bits), Expect = 1.7e-05, P = 1.7e-05
 Identities = 23/74 (31%), Positives = 38/74 (51%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNK-SVAAMGKAGGQKWKSMSEAEKAPYVQKA 96
             D   PK  +SAY  F++  R+  K+  P+   + A   K   ++WK+MS  EKA + + A
Sbjct:     5 DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKAKFDEMA 64

Query:    97 LNKKAEYELALEAY 110
                K  Y+  ++ Y
Sbjct:    65 KADKVRYDREMKDY 78


>UNIPROTKB|E7EQU1 [details] [associations]
            symbol:HMGB3 "High mobility group protein B3" species:9606
            "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
            PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            Pfam:PF09011 EMBL:AF003626 HGNC:HGNC:5004 IPI:IPI00640781
            ProteinModelPortal:E7EQU1 SMR:E7EQU1 PRIDE:E7EQU1
            Ensembl:ENST00000455596 ArrayExpress:E7EQU1 Bgee:E7EQU1
            Uniprot:E7EQU1
        Length = 193

 Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 31/82 (37%), Positives = 48/82 (58%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NAPKRP S +F+F  +FR   K + P   S+  + K  G+ W +++++EK PY+ KA 
Sbjct:    89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYITKAA 147

Query:    98 NKKAEYELALEAYKKQLNDNGA 119
               K +YE  +  YK +   +GA
Sbjct:   148 KLKEKYEKDVADYKSKGKFDGA 169

 Score = 98 (39.6 bits), Expect = 0.00022, P = 0.00022
 Identities = 22/74 (29%), Positives = 38/74 (51%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNK-SVAAMGKAGGQKWKSMSEAEKAPYVQKA 96
             D   PK  +SAY  F++  R+  K+  P+   + A   K   ++WK+MS  EK+ + + A
Sbjct:     5 DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMA 64

Query:    97 LNKKAEYELALEAY 110
                K  Y+  ++ Y
Sbjct:    65 KADKVRYDREMKDY 78


>UNIPROTKB|E7ES08 [details] [associations]
            symbol:HMGB3 "High mobility group protein B3" species:9606
            "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
            PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            Pfam:PF09011 EMBL:AF003626 HGNC:HGNC:5004 IPI:IPI00643317
            ProteinModelPortal:E7ES08 SMR:E7ES08 PRIDE:E7ES08
            Ensembl:ENST00000419110 ArrayExpress:E7ES08 Bgee:E7ES08
            Uniprot:E7ES08
        Length = 188

 Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 31/82 (37%), Positives = 48/82 (58%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NAPKRP S +F+F  +FR   K + P   S+  + K  G+ W +++++EK PY+ KA 
Sbjct:    89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYITKAA 147

Query:    98 NKKAEYELALEAYKKQLNDNGA 119
               K +YE  +  YK +   +GA
Sbjct:   148 KLKEKYEKDVADYKSKGKFDGA 169

 Score = 98 (39.6 bits), Expect = 0.00020, P = 0.00020
 Identities = 22/74 (29%), Positives = 38/74 (51%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNK-SVAAMGKAGGQKWKSMSEAEKAPYVQKA 96
             D   PK  +SAY  F++  R+  K+  P+   + A   K   ++WK+MS  EK+ + + A
Sbjct:     5 DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMA 64

Query:    97 LNKKAEYELALEAY 110
                K  Y+  ++ Y
Sbjct:    65 KADKVRYDREMKDY 78


>UNIPROTKB|J9NVS3 [details] [associations]
            symbol:HMGB3 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677
            "DNA binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
            PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            Pfam:PF09011 GeneTree:ENSGT00560000076717 OMA:DNEKQPY
            EMBL:AAEX03027044 EMBL:AAEX03027045 Ensembl:ENSCAFT00000045229
            Uniprot:J9NVS3
        Length = 219

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 37/113 (32%), Positives = 58/113 (51%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NAPKRP S +F+F  +FR   K + P   S+  + K  G+ W ++S++EK PY  KA 
Sbjct:   107 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDSEKQPYNNKAA 165

Query:    98 NKKAEYELALEAYKKQLNDNGA-GVSEDSWKXXXXXXXXXXXXXEINDEAEQE 149
               K +YE  +  YK +   +GA G ++ + K             E  +E E++
Sbjct:   166 KLKEKYEKDVADYKSKGKFDGAKGPAKVARKKVEEEDEEDEEEEEEEEEEEED 218

 Score = 98 (39.6 bits), Expect = 0.00031, P = 0.00031
 Identities = 22/74 (29%), Positives = 38/74 (51%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNK-SVAAMGKAGGQKWKSMSEAEKAPYVQKA 96
             D   PK  +SAY  F++  R+  K+  P+   + A   K   ++WK+MS  EK+ + + A
Sbjct:    23 DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMA 82

Query:    97 LNKKAEYELALEAY 110
                K  Y+  ++ Y
Sbjct:    83 KADKVRYDREMKDY 96


>ASPGD|ASPL0000037691 [details] [associations]
            symbol:AN2885 species:162425 "Emericella nidulans"
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
            evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
            evidence=IEA] [GO:0008301 "DNA binding, bending" evidence=IEA]
            [GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0070898 "RNA
            polymerase III transcriptional preinitiation complex assembly"
            evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
            GO:GO:0005694 GO:GO:0006355 GO:GO:0043565 GO:GO:0006281
            EMBL:BN001306 GO:GO:0006338 eggNOG:COG5648 GO:GO:0008301
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            EMBL:AACD01000051 GO:GO:0031491 HOGENOM:HOG000197861 GO:GO:0051123
            GO:GO:0032301 OMA:FFANDNR OrthoDB:EOG4S7P0P GO:GO:0034724
            GO:GO:0070898 RefSeq:XP_660489.1 ProteinModelPortal:Q5B995
            SMR:Q5B995 STRING:Q5B995 EnsemblFungi:CADANIAT00010204
            GeneID:2874036 KEGG:ani:AN2885.2 Uniprot:Q5B995
        Length = 106

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 35/74 (47%), Positives = 41/74 (55%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NAPKR LSAY  F  D R   +E  P   S   +GK  G+KWKS+S+ E+ PY  KA 
Sbjct:    23 DPNAPKRGLSAYMFFANDNRDKVREENP-GISFGQVGKMLGEKWKSLSDKERKPYEDKAA 81

Query:    98 NKKAEYELALEAYK 111
               K  YE    AYK
Sbjct:    82 ADKKRYEDEKAAYK 95


>RGD|1559962 [details] [associations]
            symbol:RGD1559962 "similar to High mobility group protein 2
            (HMG-2)" species:10116 "Rattus norvegicus" [GO:0003674
            "molecular_function" evidence=ND] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0008150 "biological_process" evidence=ND]
            REFSEQ:XM_001074365 Ncbi:XP_001074365
        Length = 209

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 39/116 (33%), Positives = 51/116 (43%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NAPKRP SA+F+F  + R   K   P   S+    K  G+ W   S  +K PY QKA 
Sbjct:    91 DPNAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAA 149

Query:    98 NKKAEYELALEAY----KKQLNDNGAGVSEDSWKXXXXXXXXXXXXXEINDEAEQE 149
               K EYE  + AY    K ++   G G    S K             +  DE E++
Sbjct:   150 KLKEEYEKDIAAYRAKGKSEVGKKGPGRPTGSKKKNEPEDEEEEEEEDDEDEEEED 205

 Score = 115 (45.5 bits), Expect = 7.6e-07, P = 7.6e-07
 Identities = 26/88 (29%), Positives = 44/88 (50%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNK-SVAAMGKAGGQKWKSMSEAEKAPYVQKA 96
             D N P+  +S+Y  F++  R+  K   PD+  + A   K   ++WK+MS  EK+ +   A
Sbjct:     5 DPNKPRGKMSSYAFFVQTCREEHKNKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLA 64

Query:    97 LNKKAEYELALEAYKKQLNDNGAGVSED 124
              + KA Y+  ++ Y     D   G  +D
Sbjct:    65 KSDKARYDREMKNYVPPKGDK-KGKKKD 91


>UNIPROTKB|P36194 [details] [associations]
            symbol:HMGB1 "High mobility group protein B1" species:9031
            "Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
            InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
            GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 eggNOG:COG5648
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            Pfam:PF09011 HOVERGEN:HBG009000 EMBL:D14314 IPI:IPI00591130
            PIR:I50254 UniGene:Gga.4513 ProteinModelPortal:P36194 SMR:P36194
            STRING:P36194 PRIDE:P36194 Uniprot:P36194
        Length = 201

 Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 32/82 (39%), Positives = 46/82 (56%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NAPKRP S +F+F  +FR   K + P   S+  + K  G+ W ++S+ EK PY  KA 
Sbjct:    88 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDGEKQPYNNKAA 146

Query:    98 NKKAEYELALEAYKKQLNDNGA 119
               K +YE  +  YK +   +GA
Sbjct:   147 KLKEKYEKDVADYKSKGKFDGA 168

 Score = 99 (39.9 bits), Expect = 9.4e-05, P = 9.4e-05
 Identities = 22/73 (30%), Positives = 37/73 (50%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D   PK  +SAY  F++  R+  K++     + A   K   ++WK+MS  EKA + + A 
Sbjct:     5 DPKKPKGKMSAYAFFVQTCREEHKKNPEVPVNFAEFSKKCSERWKTMSSKEKAKFDEMAK 64

Query:    98 NKKAEYELALEAY 110
               K  Y+  ++ Y
Sbjct:    65 ADKVRYDREMKDY 77


>UNIPROTKB|P40673 [details] [associations]
            symbol:HMGB2 "High mobility group protein B2" species:9913
            "Bos taurus" [GO:0048471 "perinuclear region of cytoplasm"
            evidence=ISS] [GO:0000793 "condensed chromosome" evidence=ISS]
            [GO:0008301 "DNA binding, bending" evidence=ISS;IDA] [GO:0006357
            "regulation of transcription from RNA polymerase II promoter"
            evidence=ISS] [GO:0006288 "base-excision repair, DNA ligation"
            evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISS] [GO:0003684 "damaged DNA binding"
            evidence=IDA] [GO:0033151 "V(D)J recombination" evidence=IDA]
            [GO:0006338 "chromatin remodeling" evidence=NAS] [GO:0042393
            "histone binding" evidence=IDA] [GO:0003697 "single-stranded DNA
            binding" evidence=IDA] [GO:0006265 "DNA topological change"
            evidence=IDA] [GO:0003690 "double-stranded DNA binding"
            evidence=IDA] [GO:0006310 "DNA recombination" evidence=IDA]
            [GO:0071222 "cellular response to lipopolysaccharide" evidence=IEA]
            [GO:0060326 "cell chemotaxis" evidence=IEA] [GO:0050786 "RAGE
            receptor binding" evidence=IEA] [GO:0048545 "response to steroid
            hormone stimulus" evidence=IEA] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=IEA]
            [GO:0045892 "negative regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0045654 "positive regulation of megakaryocyte
            differentiation" evidence=IEA] [GO:0045648 "positive regulation of
            erythrocyte differentiation" evidence=IEA] [GO:0044212
            "transcription regulatory region DNA binding" evidence=IEA]
            [GO:0043388 "positive regulation of DNA binding" evidence=IEA]
            [GO:0043234 "protein complex" evidence=IEA] [GO:0042056
            "chemoattractant activity" evidence=IEA] [GO:0032075 "positive
            regulation of nuclease activity" evidence=IEA] [GO:0019904 "protein
            domain specific binding" evidence=IEA] [GO:0008584 "male gonad
            development" evidence=IEA] [GO:0007289 "spermatid nucleus
            differentiation" evidence=IEA] [GO:0005615 "extracellular space"
            evidence=IEA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0001938 "positive
            regulation of endothelial cell proliferation" evidence=IEA]
            InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
            GO:GO:0005634 GO:GO:0048471 GO:GO:0045892 GO:GO:0005615
            GO:GO:0043234 GO:GO:0005730 GO:GO:0003684 GO:GO:0001938
            GO:GO:0045944 GO:GO:0003700 GO:GO:0006357 GO:GO:0071222
            GO:GO:0048545 GO:GO:0008584 GO:GO:0006338 eggNOG:COG5648
            GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0044212 GO:GO:0007289 GO:GO:0003690
            GO:GO:0003697 GO:GO:0045648 GO:GO:0045654 GO:GO:0060326
            GO:GO:0042393 GO:GO:0000793 GO:GO:0042056 GO:GO:0043388
            Pfam:PF09011 GO:GO:0032075 GO:GO:0033151 GO:GO:0006265
            HOGENOM:HOG000197861 KO:K11295 GeneTree:ENSGT00560000076717
            HOVERGEN:HBG009000 GO:GO:0006288 EMBL:BC109755 IPI:IPI00689856
            RefSeq:NP_001032705.1 UniGene:Bt.6397 ProteinModelPortal:P40673
            SMR:P40673 STRING:P40673 PRIDE:P40673 Ensembl:ENSBTAT00000020096
            GeneID:540444 KEGG:bta:540444 CTD:3148 InParanoid:P40673
            OMA:KIKNDHP OrthoDB:EOG4TTGK2 NextBio:20878641 Uniprot:P40673
        Length = 209

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 39/116 (33%), Positives = 50/116 (43%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NAPKRP SA+F+F  + R   K   P   S+    K  G+ W   S  +K PY QKA 
Sbjct:    91 DPNAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAA 149

Query:    98 NKKAEYELALEAY----KKQLNDNGAGVSEDSWKXXXXXXXXXXXXXEINDEAEQE 149
               K +YE  + AY    K +    G G    S K             E  DE E++
Sbjct:   150 KLKEKYEKDIAAYRAKGKSEAGKKGPGRPTGSKKKNEPEDEEEEEEEEDEDEEEED 205

 Score = 117 (46.2 bits), Expect = 4.4e-07, P = 4.4e-07
 Identities = 26/88 (29%), Positives = 45/88 (51%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNK-SVAAMGKAGGQKWKSMSEAEKAPYVQKA 96
             D N P+  +S+Y  F++  R+  K+  PD+  + A   K   ++WK+MS  EK+ +   A
Sbjct:     5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64

Query:    97 LNKKAEYELALEAYKKQLNDNGAGVSED 124
              + KA Y+  ++ Y     D   G  +D
Sbjct:    65 KSDKARYDREMKNYVPPKGDK-KGKKKD 91


>UNIPROTKB|P26583 [details] [associations]
            symbol:HMGB2 "High mobility group protein B2" species:9606
            "Homo sapiens" [GO:0007289 "spermatid nucleus differentiation"
            evidence=IEA] [GO:0008584 "male gonad development" evidence=IEA]
            [GO:0019904 "protein domain specific binding" evidence=IEA]
            [GO:0048545 "response to steroid hormone stimulus" evidence=IEA]
            [GO:0048015 "phosphatidylinositol-mediated signaling" evidence=NAS]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0048471 "perinuclear region of cytoplasm"
            evidence=IDA] [GO:0006325 "chromatin organization" evidence=NAS]
            [GO:0008301 "DNA binding, bending" evidence=IDA] [GO:0006334
            "nucleosome assembly" evidence=NAS] [GO:0006357 "regulation of
            transcription from RNA polymerase II promoter" evidence=IDA]
            [GO:0000793 "condensed chromosome" evidence=IDA] [GO:0006288
            "base-excision repair, DNA ligation" evidence=IDA] [GO:0001938
            "positive regulation of endothelial cell proliferation"
            evidence=IDA] [GO:0042056 "chemoattractant activity" evidence=IDA]
            [GO:0060326 "cell chemotaxis" evidence=IDA] [GO:0050786 "RAGE
            receptor binding" evidence=IGI] [GO:0003684 "damaged DNA binding"
            evidence=IDA] [GO:0043234 "protein complex" evidence=IDA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0003677 "DNA
            binding" evidence=IMP] [GO:0005615 "extracellular space"
            evidence=IDA] [GO:0071222 "cellular response to lipopolysaccharide"
            evidence=IEP] [GO:0051103 "DNA ligation involved in DNA repair"
            evidence=ISS] [GO:0006265 "DNA topological change" evidence=ISS]
            [GO:0003690 "double-stranded DNA binding" evidence=ISS] [GO:0003697
            "single-stranded DNA binding" evidence=ISS] [GO:0032075 "positive
            regulation of nuclease activity" evidence=IDA] [GO:0033151 "V(D)J
            recombination" evidence=ISS] [GO:0044212 "transcription regulatory
            region DNA binding" evidence=IDA] [GO:0045893 "positive regulation
            of transcription, DNA-dependent" evidence=IDA] [GO:0045944
            "positive regulation of transcription from RNA polymerase II
            promoter" evidence=IDA] [GO:0043388 "positive regulation of DNA
            binding" evidence=IDA] [GO:0045648 "positive regulation of
            erythrocyte differentiation" evidence=IMP] [GO:0045654 "positive
            regulation of megakaryocyte differentiation" evidence=IMP]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS]
            [GO:0006309 "apoptotic DNA fragmentation" evidence=TAS] [GO:0006915
            "apoptotic process" evidence=TAS] [GO:0006921 "cellular component
            disassembly involved in execution phase of apoptosis" evidence=TAS]
            [GO:0045892 "negative regulation of transcription, DNA-dependent"
            evidence=IDA] [GO:0050918 "positive chemotaxis" evidence=IDA]
            Reactome:REACT_578 InterPro:IPR009071 InterPro:IPR017967
            PROSITE:PS00353 Pfam:PF00505 GO:GO:0048471 GO:GO:0045892
            GO:GO:0005615 GO:GO:0043234 GO:GO:0005654 GO:GO:0003684
            GO:GO:0001938 GO:GO:0045944 GO:GO:0003700 GO:GO:0071222
            GO:GO:0048545 GO:GO:0008584 eggNOG:COG5648 GO:GO:0008301
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0044212 GO:GO:0007289 GO:GO:0003690 GO:GO:0003697
            EMBL:CH471056 GO:GO:0045648 GO:GO:0045654 GO:GO:0048015
            GO:GO:0060326 GO:GO:0006309 GO:GO:0000793 GO:GO:0042056
            GO:GO:0006334 GO:GO:0043388 Pfam:PF09011 GO:GO:0032075
            GO:GO:0033151 GO:GO:0006265 HOGENOM:HOG000197861 KO:K11295
            HOVERGEN:HBG009000 GO:GO:0006288 HPA:HPA003506 GO:GO:0050786
            CTD:3148 OMA:KIKNDHP OrthoDB:EOG4TTGK2 EMBL:M83665 EMBL:X62534
            EMBL:BT019782 EMBL:AK311864 EMBL:BC001063 EMBL:BC100019 EMBL:Z17240
            IPI:IPI00219097 PIR:A42425 PIR:S30221 RefSeq:NP_001124160.1
            RefSeq:NP_001124161.1 RefSeq:NP_002120.1 UniGene:Hs.434953
            ProteinModelPortal:P26583 SMR:P26583 IntAct:P26583 MINT:MINT-240190
            STRING:P26583 PhosphoSite:P26583 DMDM:123374 PaxDb:P26583
            PeptideAtlas:P26583 PRIDE:P26583 DNASU:3148 Ensembl:ENST00000296503
            Ensembl:ENST00000438704 Ensembl:ENST00000446922 GeneID:3148
            KEGG:hsa:3148 UCSC:uc003ita.3 GeneCards:GC04M174252 HGNC:HGNC:5000
            MIM:163906 neXtProt:NX_P26583 PharmGKB:PA35091 InParanoid:P26583
            ChiTaRS:HMGB2 GenomeRNAi:3148 NextBio:12476 PMAP-CutDB:P26583
            ArrayExpress:P26583 Bgee:P26583 CleanEx:HS_HMGB2
            Genevestigator:P26583 GermOnline:ENSG00000164104 Uniprot:P26583
        Length = 209

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 39/116 (33%), Positives = 50/116 (43%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NAPKRP SA+F+F  + R   K   P   S+    K  G+ W   S  +K PY QKA 
Sbjct:    91 DPNAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAA 149

Query:    98 NKKAEYELALEAY----KKQLNDNGAGVSEDSWKXXXXXXXXXXXXXEINDEAEQE 149
               K +YE  + AY    K +    G G    S K             E  DE E++
Sbjct:   150 KLKEKYEKDIAAYRAKGKSEAGKKGPGRPTGSKKKNEPEDEEEEEEEEDEDEEEED 205

 Score = 117 (46.2 bits), Expect = 4.4e-07, P = 4.4e-07
 Identities = 26/88 (29%), Positives = 45/88 (51%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNK-SVAAMGKAGGQKWKSMSEAEKAPYVQKA 96
             D N P+  +S+Y  F++  R+  K+  PD+  + A   K   ++WK+MS  EK+ +   A
Sbjct:     5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64

Query:    97 LNKKAEYELALEAYKKQLNDNGAGVSED 124
              + KA Y+  ++ Y     D   G  +D
Sbjct:    65 KSDKARYDREMKNYVPPKGDK-KGKKKD 91


>UNIPROTKB|F1MF42 [details] [associations]
            symbol:LOC618297 "Uncharacterized protein" species:9913
            "Bos taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
            PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            Pfam:PF09011 GeneTree:ENSGT00560000076717 EMBL:DAAA02009820
            IPI:IPI00687888 Ensembl:ENSBTAT00000027565 OMA:INTCREE
            Uniprot:F1MF42
        Length = 196

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 39/116 (33%), Positives = 50/116 (43%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NAPKRP SA+F+F  + R   K   P   S+    K  G+ W   S  +K PY QKA 
Sbjct:    80 DPNAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAA 138

Query:    98 NKKAEYELALEAY----KKQLNDNGAGVSEDSWKXXXXXXXXXXXXXEINDEAEQE 149
               K +YE  + AY    K +    G G    S K             E  DE E++
Sbjct:   139 KLKEKYEKDIAAYRAKGKSEAGKKGPGRPTGSKKKNEPEDEEEEEEEEDEDEEEED 194


>RGD|1564519 [details] [associations]
            symbol:RGD1564519 "similar to High mobility group protein 2
            (HMG-2)" species:10116 "Rattus norvegicus" [GO:0003674
            "molecular_function" evidence=ND] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0008150 "biological_process" evidence=ND]
            REFSEQ:XM_001063065 Ncbi:XP_001063065
        Length = 210

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 40/116 (34%), Positives = 52/116 (44%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NAPKRP SA+F+F  + R   K   P   S+    K  G+ W   S  +K PY QKA 
Sbjct:    91 DPNAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAA 149

Query:    98 NKKAEYELALEAY----KKQLNDNGAGVSEDSWKXXXXXXXXXXXXXEINDEAEQE 149
               K +YE  + AY    K ++   G G    S K             E +DE E+E
Sbjct:   150 KLKEKYEKDIAAYRAKGKSEVGKKGPGRPTGSKKKNEPEDEEEEEEEE-DDEDEEE 204

 Score = 116 (45.9 bits), Expect = 5.9e-07, P = 5.9e-07
 Identities = 26/88 (29%), Positives = 45/88 (51%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNK-SVAAMGKAGGQKWKSMSEAEKAPYVQKA 96
             D N P+  +S+Y  F++  R+  K+  PD+  + A   K   ++WK+MS  EK+ +   A
Sbjct:     5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLA 64

Query:    97 LNKKAEYELALEAYKKQLNDNGAGVSED 124
              + KA Y+  ++ Y     D   G  +D
Sbjct:    65 KSDKARYDREMKNYVPPKGDK-KGKKKD 91


>RGD|69291 [details] [associations]
            symbol:Hmgb2 "high mobility group box 2" species:10116 "Rattus
           norvegicus" [GO:0000793 "condensed chromosome" evidence=ISO;ISS]
           [GO:0001938 "positive regulation of endothelial cell proliferation"
           evidence=ISO] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003684
           "damaged DNA binding" evidence=ISO] [GO:0003690 "double-stranded DNA
           binding" evidence=TAS] [GO:0003700 "sequence-specific DNA binding
           transcription factor activity" evidence=ISO] [GO:0005615
           "extracellular space" evidence=ISO] [GO:0005634 "nucleus"
           evidence=ISO;ISS;IDA] [GO:0005737 "cytoplasm" evidence=ISO;ISS]
           [GO:0006288 "base-excision repair, DNA ligation" evidence=ISO;ISS]
           [GO:0006357 "regulation of transcription from RNA polymerase II
           promoter" evidence=ISO;ISS] [GO:0007049 "cell cycle" evidence=IEP]
           [GO:0007283 "spermatogenesis" evidence=ISO] [GO:0007289 "spermatid
           nucleus differentiation" evidence=ISO] [GO:0007399 "nervous system
           development" evidence=IDA] [GO:0008289 "lipid binding" evidence=IDA]
           [GO:0008301 "DNA binding, bending" evidence=ISO;ISS] [GO:0008584
           "male gonad development" evidence=ISO] [GO:0019904 "protein domain
           specific binding" evidence=ISO] [GO:0031100 "organ regeneration"
           evidence=IEP] [GO:0031493 "nucleosomal histone binding"
           evidence=IDA] [GO:0032075 "positive regulation of nuclease activity"
           evidence=ISO] [GO:0042056 "chemoattractant activity" evidence=ISO]
           [GO:0043066 "negative regulation of apoptotic process" evidence=ISO]
           [GO:0043234 "protein complex" evidence=ISO] [GO:0043388 "positive
           regulation of DNA binding" evidence=ISO] [GO:0044212 "transcription
           regulatory region DNA binding" evidence=ISO] [GO:0045648 "positive
           regulation of erythrocyte differentiation" evidence=ISO] [GO:0045654
           "positive regulation of megakaryocyte differentiation" evidence=ISO]
           [GO:0045892 "negative regulation of transcription, DNA-dependent"
           evidence=ISO] [GO:0045893 "positive regulation of transcription,
           DNA-dependent" evidence=ISO;IMP] [GO:0045944 "positive regulation of
           transcription from RNA polymerase II promoter" evidence=ISO]
           [GO:0048471 "perinuclear region of cytoplasm" evidence=ISO;ISS]
           [GO:0048545 "response to steroid hormone stimulus" evidence=ISO]
           [GO:0050786 "RAGE receptor binding" evidence=ISO] [GO:0050918
           "positive chemotaxis" evidence=ISO] [GO:0051054 "positive regulation
           of DNA metabolic process" evidence=IMP] [GO:0060326 "cell
           chemotaxis" evidence=ISO] [GO:0071222 "cellular response to
           lipopolysaccharide" evidence=ISO] InterPro:IPR009071
           InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:69291
           GO:GO:0005634 GO:GO:0048471 GO:GO:0045893 GO:GO:0007399
           GO:GO:0031100 GO:GO:0006357 eggNOG:COG5648 GO:GO:0008301
           Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
           GO:GO:0007049 GO:GO:0008289 GO:GO:0003690 GO:GO:0000793
           GO:GO:0051054 GO:GO:0031493 Pfam:PF09011 HOGENOM:HOG000197861
           KO:K11295 GeneTree:ENSGT00560000076717 HOVERGEN:HBG009000
           GO:GO:0006288 CTD:3148 OMA:KIKNDHP OrthoDB:EOG4TTGK2 EMBL:D84418
           EMBL:BC078866 EMBL:BC089854 EMBL:BC107455 IPI:IPI00876582
           RefSeq:NP_058883.1 RefSeq:XP_001063065.2 RefSeq:XP_573272.3
           UniGene:Rn.218982 UniGene:Rn.2874 ProteinModelPortal:P52925
           SMR:P52925 STRING:P52925 DNASU:29395 Ensembl:ENSRNOT00000017635
           Ensembl:ENSRNOT00000046874 GeneID:29395 GeneID:498072 KEGG:rno:29395
           KEGG:rno:498072 UCSC:RGD:69291 CTD:498072 InParanoid:P52925
           NextBio:609027 Genevestigator:P52925 GermOnline:ENSRNOG00000013167
           GermOnline:ENSRNOG00000030313 Uniprot:P52925
        Length = 210

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 40/116 (34%), Positives = 52/116 (44%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NAPKRP SA+F+F  + R   K   P   S+    K  G+ W   S  +K PY QKA 
Sbjct:    91 DPNAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAA 149

Query:    98 NKKAEYELALEAY----KKQLNDNGAGVSEDSWKXXXXXXXXXXXXXEINDEAEQE 149
               K +YE  + AY    K ++   G G    S K             E +DE E+E
Sbjct:   150 KLKEKYEKDIAAYRAKGKSEVGKKGPGRPTGSKKKNEPEDEEEEEEEE-DDEDEEE 204

 Score = 116 (45.9 bits), Expect = 5.9e-07, P = 5.9e-07
 Identities = 26/88 (29%), Positives = 45/88 (51%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNK-SVAAMGKAGGQKWKSMSEAEKAPYVQKA 96
             D N P+  +S+Y  F++  R+  K+  PD+  + A   K   ++WK+MS  EK+ +   A
Sbjct:     5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLA 64

Query:    97 LNKKAEYELALEAYKKQLNDNGAGVSED 124
              + KA Y+  ++ Y     D   G  +D
Sbjct:    65 KSDKARYDREMKNYVPPKGDK-KGKKKD 91


>UNIPROTKB|F1NPU8 [details] [associations]
            symbol:HMGB2 "High mobility group protein B2" species:9031
            "Gallus gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0000793
            "condensed chromosome" evidence=IEA] [GO:0001938 "positive
            regulation of endothelial cell proliferation" evidence=IEA]
            [GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IEA] [GO:0005615 "extracellular space" evidence=IEA]
            [GO:0006288 "base-excision repair, DNA ligation" evidence=IEA]
            [GO:0007289 "spermatid nucleus differentiation" evidence=IEA]
            [GO:0008301 "DNA binding, bending" evidence=IEA] [GO:0008584 "male
            gonad development" evidence=IEA] [GO:0019904 "protein domain
            specific binding" evidence=IEA] [GO:0032075 "positive regulation of
            nuclease activity" evidence=IEA] [GO:0042056 "chemoattractant
            activity" evidence=IEA] [GO:0043234 "protein complex" evidence=IEA]
            [GO:0043388 "positive regulation of DNA binding" evidence=IEA]
            [GO:0044212 "transcription regulatory region DNA binding"
            evidence=IEA] [GO:0045648 "positive regulation of erythrocyte
            differentiation" evidence=IEA] [GO:0045654 "positive regulation of
            megakaryocyte differentiation" evidence=IEA] [GO:0045892 "negative
            regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IEA] [GO:0048471 "perinuclear
            region of cytoplasm" evidence=IEA] [GO:0048545 "response to steroid
            hormone stimulus" evidence=IEA] [GO:0050786 "RAGE receptor binding"
            evidence=IEA] [GO:0060326 "cell chemotaxis" evidence=IEA]
            [GO:0071222 "cellular response to lipopolysaccharide" evidence=IEA]
            InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
            GO:GO:0048471 GO:GO:0045892 GO:GO:0005615 GO:GO:0043234
            GO:GO:0005730 GO:GO:0003684 GO:GO:0001938 GO:GO:0045944
            GO:GO:0003700 GO:GO:0048545 GO:GO:0008301 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0044212
            GO:GO:0045648 GO:GO:0045654 GO:GO:0060326 GO:GO:0000793
            GO:GO:0042056 GO:GO:0043388 Pfam:PF09011 GO:GO:0032075
            GeneTree:ENSGT00560000076717 GO:GO:0006288 OMA:KIKNDHP
            IPI:IPI00579203 EMBL:AADN02008951 Ensembl:ENSGALT00000017483
            Uniprot:F1NPU8
        Length = 207

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 33/82 (40%), Positives = 43/82 (52%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NAPKRP SA+F+F  + R   K   P   S+    K  G+ W   S  +K PY QKA 
Sbjct:    91 DPNAPKRPPSAFFLFCSEHRPKIKNDHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAA 149

Query:    98 NKKAEYELALEAYK-KQLNDNG 118
               K +YE  + AY+ K  +D G
Sbjct:   150 KLKEKYEKDIAAYRAKSKSDAG 171

 Score = 113 (44.8 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 22/74 (29%), Positives = 40/74 (54%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNK-SVAAMGKAGGQKWKSMSEAEKAPYVQKA 96
             D N P+  +S+Y  F++  R+  K+  PD+  + A   +   ++WK+MS  EK  + + A
Sbjct:     5 DPNKPRGKMSSYAYFVQTCREEHKKKHPDSSVNFAEFSRKCSERWKTMSSKEKGKFEEMA 64

Query:    97 LNKKAEYELALEAY 110
                KA Y+  ++ Y
Sbjct:    65 KGDKARYDREMKNY 78


>UNIPROTKB|F1N927 [details] [associations]
            symbol:HMGB1 "High mobility group protein B1" species:9031
            "Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0000793
            "condensed chromosome" evidence=IEA] [GO:0001654 "eye development"
            evidence=IEA] [GO:0002437 "inflammatory response to antigenic
            stimulus" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0005125 "cytokine
            activity" evidence=IEA] [GO:0005615 "extracellular space"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006288
            "base-excision repair, DNA ligation" evidence=IEA] [GO:0009986
            "cell surface" evidence=IEA] [GO:0010858 "calcium-dependent protein
            kinase regulator activity" evidence=IEA] [GO:0017053
            "transcriptional repressor complex" evidence=IEA] [GO:0017055
            "negative regulation of RNA polymerase II transcriptional
            preinitiation complex assembly" evidence=IEA] [GO:0030295 "protein
            kinase activator activity" evidence=IEA] [GO:0030324 "lung
            development" evidence=IEA] [GO:0033151 "V(D)J recombination"
            evidence=IEA] [GO:0043005 "neuron projection" evidence=IEA]
            [GO:0043065 "positive regulation of apoptotic process"
            evidence=IEA] [GO:0043280 "positive regulation of cysteine-type
            endopeptidase activity involved in apoptotic process" evidence=IEA]
            [GO:0043388 "positive regulation of DNA binding" evidence=IEA]
            [GO:0045639 "positive regulation of myeloid cell differentiation"
            evidence=IEA] [GO:0045819 "positive regulation of glycogen
            catabolic process" evidence=IEA] [GO:0045944 "positive regulation
            of transcription from RNA polymerase II promoter" evidence=IEA]
            [GO:0051384 "response to glucocorticoid stimulus" evidence=IEA]
            [GO:0070491 "repressing transcription factor binding" evidence=IEA]
            [GO:2000426 "negative regulation of apoptotic cell clearance"
            evidence=IEA] InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353
            Pfam:PF00505 GO:GO:0005737 GO:GO:0017053 GO:GO:0005615
            GO:GO:0009986 GO:GO:0005730 GO:GO:0002437 GO:GO:0003677
            GO:GO:0045944 GO:GO:0051384 GO:GO:0043005 GO:GO:0003700
            GO:GO:0045860 GO:GO:0030295 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0043065 GO:GO:0043280
            GO:GO:0045819 GO:GO:0000793 GO:GO:0043388 Pfam:PF09011
            GO:GO:0045639 OMA:GEDAMRK GO:GO:0017055
            GeneTree:ENSGT00560000076717 GO:GO:0006288 GO:GO:0010858
            GO:GO:2000426 EMBL:AADN02005232 IPI:IPI00818014
            Ensembl:ENSGALT00000036454 ArrayExpress:F1N927 Uniprot:F1N927
        Length = 214

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 40/116 (34%), Positives = 56/116 (48%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NAPKRP SA+F+F  +FR   K   P   S+  + K  G+ W + +  +K PY +KA 
Sbjct:    91 DPNAPKRPPSAFFLFCSEFRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAA 149

Query:    98 NKKAEYELALEAYK-KQLNDNGAGV---SEDSWKXXXXXXXXXXXXXEINDEAEQE 149
               K +YE  + AY+ K   D G  V   +E S K             +  DE E+E
Sbjct:   150 KLKEKYEKDIAAYRAKGKVDAGKKVVAKAEKSKKKKEEEEDEDEDEEDEEDEEEEE 205

 Score = 100 (40.3 bits), Expect = 4.4e-05, P = 4.4e-05
 Identities = 21/74 (28%), Positives = 37/74 (50%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPD-NKSVAAMGKAGGQKWKSMSEAEKAPYVQKA 96
             D   P+  +S+Y  F++  R+  K+  PD + + +   K   ++WK+MS  EK  +   A
Sbjct:     5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSSKEKGKFEDMA 64

Query:    97 LNKKAEYELALEAY 110
                K  YE  ++ Y
Sbjct:    65 KADKLRYEKEMKNY 78


>UNIPROTKB|Q9YH06 [details] [associations]
            symbol:HMG1 "High mobility group 1 protein" species:9031
            "Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0000793
            "condensed chromosome" evidence=IEA] [GO:0001654 "eye development"
            evidence=IEA] [GO:0002437 "inflammatory response to antigenic
            stimulus" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0005125 "cytokine
            activity" evidence=IEA] [GO:0005615 "extracellular space"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006288
            "base-excision repair, DNA ligation" evidence=IEA] [GO:0009986
            "cell surface" evidence=IEA] [GO:0010858 "calcium-dependent protein
            kinase regulator activity" evidence=IEA] [GO:0017053
            "transcriptional repressor complex" evidence=IEA] [GO:0017055
            "negative regulation of RNA polymerase II transcriptional
            preinitiation complex assembly" evidence=IEA] [GO:0030295 "protein
            kinase activator activity" evidence=IEA] [GO:0030324 "lung
            development" evidence=IEA] [GO:0033151 "V(D)J recombination"
            evidence=IEA] [GO:0043005 "neuron projection" evidence=IEA]
            [GO:0043065 "positive regulation of apoptotic process"
            evidence=IEA] [GO:0043280 "positive regulation of cysteine-type
            endopeptidase activity involved in apoptotic process" evidence=IEA]
            [GO:0043388 "positive regulation of DNA binding" evidence=IEA]
            [GO:0045639 "positive regulation of myeloid cell differentiation"
            evidence=IEA] [GO:0045819 "positive regulation of glycogen
            catabolic process" evidence=IEA] [GO:0045944 "positive regulation
            of transcription from RNA polymerase II promoter" evidence=IEA]
            [GO:0051384 "response to glucocorticoid stimulus" evidence=IEA]
            [GO:0070491 "repressing transcription factor binding" evidence=IEA]
            [GO:2000426 "negative regulation of apoptotic cell clearance"
            evidence=IEA] InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353
            Pfam:PF00505 GO:GO:0005737 GO:GO:0017053 GO:GO:0005615
            GO:GO:0009986 GO:GO:0005730 GO:GO:0002437 GO:GO:0003677
            GO:GO:0045944 GO:GO:0051384 GO:GO:0043005 GO:GO:0003700
            GO:GO:0045860 GO:GO:0030295 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0043065 GO:GO:0043280
            GO:GO:0045819 GO:GO:0000793 GO:GO:0043388 Pfam:PF09011
            GO:GO:0045639 HSSP:P07155 HOGENOM:HOG000197861 OMA:GEDAMRK
            KO:K10802 GO:GO:0017055 CTD:3146 GeneTree:ENSGT00560000076717
            HOVERGEN:HBG009000 GO:GO:0006288 GO:GO:0010858 GO:GO:2000426
            EMBL:AADN02005232 EMBL:Y17968 EMBL:AJ851648 IPI:IPI00595982
            RefSeq:NP_990233.1 UniGene:Gga.4638 SMR:Q9YH06 STRING:Q9YH06
            Ensembl:ENSGALT00000027593 GeneID:395724 KEGG:gga:395724
            InParanoid:Q9YH06 NextBio:20815793 Uniprot:Q9YH06
        Length = 215

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 40/116 (34%), Positives = 56/116 (48%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NAPKRP SA+F+F  +FR   K   P   S+  + K  G+ W + +  +K PY +KA 
Sbjct:    91 DPNAPKRPPSAFFLFCSEFRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAA 149

Query:    98 NKKAEYELALEAYK-KQLNDNGAGV---SEDSWKXXXXXXXXXXXXXEINDEAEQE 149
               K +YE  + AY+ K   D G  V   +E S K             +  DE E+E
Sbjct:   150 KLKEKYEKDIAAYRAKGKVDAGKKVVAKAEKSKKKKEEEEDEDEDEEDEEDEEEEE 205

 Score = 100 (40.3 bits), Expect = 4.4e-05, P = 4.4e-05
 Identities = 21/74 (28%), Positives = 37/74 (50%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPD-NKSVAAMGKAGGQKWKSMSEAEKAPYVQKA 96
             D   P+  +S+Y  F++  R+  K+  PD + + +   K   ++WK+MS  EK  +   A
Sbjct:     5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSSKEKGKFEDMA 64

Query:    97 LNKKAEYELALEAY 110
                K  YE  ++ Y
Sbjct:    65 KADKLRYEKEMKNY 78


>RGD|1561694 [details] [associations]
            symbol:RGD1561694 "similar to High mobility group protein 2
            (HMG-2)" species:10116 "Rattus norvegicus" [GO:0003674
            "molecular_function" evidence=ND] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0008150 "biological_process" evidence=ND]
            REFSEQ:XM_003752741 Ncbi:XP_003752789
        Length = 209

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 38/116 (32%), Positives = 51/116 (43%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NAPKRP SA+F+F  + R   K   P   S+    K  G+ W   S  +K PY QKA 
Sbjct:    91 DPNAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAA 149

Query:    98 NKKAEYELALEAY----KKQLNDNGAGVSEDSWKXXXXXXXXXXXXXEINDEAEQE 149
               K +YE  + AY    K ++   G G    S K             +  DE E++
Sbjct:   150 KLKEKYEKDIAAYRAKGKSEVGKKGPGRPTGSKKKNEPEDEEEEEEEDGEDEEEED 205

 Score = 113 (44.8 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 23/74 (31%), Positives = 40/74 (54%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNK-SVAAMGKAGGQKWKSMSEAEKAPYVQKA 96
             D N P+  +S Y  F++  R+  K+  PD+  + A   K   ++WK+MS  EK+ +   A
Sbjct:     5 DPNKPRGKMSLYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLA 64

Query:    97 LNKKAEYELALEAY 110
              + KA Y+  ++ Y
Sbjct:    65 KSDKARYDREMKNY 78


>UNIPROTKB|E2QY30 [details] [associations]
            symbol:HMGB2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0071222 "cellular response to
            lipopolysaccharide" evidence=IEA] [GO:0060326 "cell chemotaxis"
            evidence=IEA] [GO:0050786 "RAGE receptor binding" evidence=IEA]
            [GO:0048545 "response to steroid hormone stimulus" evidence=IEA]
            [GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IEA] [GO:0045892 "negative
            regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0045654 "positive regulation of megakaryocyte differentiation"
            evidence=IEA] [GO:0045648 "positive regulation of erythrocyte
            differentiation" evidence=IEA] [GO:0044212 "transcription
            regulatory region DNA binding" evidence=IEA] [GO:0043388 "positive
            regulation of DNA binding" evidence=IEA] [GO:0043234 "protein
            complex" evidence=IEA] [GO:0042056 "chemoattractant activity"
            evidence=IEA] [GO:0032075 "positive regulation of nuclease
            activity" evidence=IEA] [GO:0019904 "protein domain specific
            binding" evidence=IEA] [GO:0008584 "male gonad development"
            evidence=IEA] [GO:0008301 "DNA binding, bending" evidence=IEA]
            [GO:0007289 "spermatid nucleus differentiation" evidence=IEA]
            [GO:0006288 "base-excision repair, DNA ligation" evidence=IEA]
            [GO:0005615 "extracellular space" evidence=IEA] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
            [GO:0001938 "positive regulation of endothelial cell proliferation"
            evidence=IEA] [GO:0000793 "condensed chromosome" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
            InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0048471
            GO:GO:0045892 GO:GO:0005615 GO:GO:0043234 GO:GO:0005730
            GO:GO:0003684 GO:GO:0001938 GO:GO:0045944 GO:GO:0003700
            GO:GO:0071222 GO:GO:0048545 GO:GO:0008584 GO:GO:0008301
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0044212 GO:GO:0007289 GO:GO:0045648 GO:GO:0045654
            GO:GO:0060326 GO:GO:0000793 GO:GO:0042056 GO:GO:0043388
            Pfam:PF09011 GO:GO:0032075 KO:K11295 GeneTree:ENSGT00560000076717
            GO:GO:0006288 CTD:3148 OMA:KIKNDHP EMBL:AAEX03014309
            RefSeq:XP_543194.2 Ensembl:ENSCAFT00000012535 GeneID:486068
            KEGG:cfa:486068 NextBio:20859918 Uniprot:E2QY30
        Length = 210

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 38/116 (32%), Positives = 51/116 (43%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NAPKRP SA+F+F  + R   K   P   S+    K  G+ W   S  +K PY QKA 
Sbjct:    91 DPNAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAA 149

Query:    98 NKKAEYELALEAY----KKQLNDNGAGVSEDSWKXXXXXXXXXXXXXEINDEAEQE 149
               K +YE  + AY    K +    G G    S K             E +++ E+E
Sbjct:   150 KLKEKYEKDIAAYRAKGKSEAGKKGPGRPTGSKKKNEPEDEEEEEEEEEDEDDEEE 205

 Score = 117 (46.2 bits), Expect = 4.5e-07, P = 4.5e-07
 Identities = 26/88 (29%), Positives = 45/88 (51%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNK-SVAAMGKAGGQKWKSMSEAEKAPYVQKA 96
             D N P+  +S+Y  F++  R+  K+  PD+  + A   K   ++WK+MS  EK+ +   A
Sbjct:     5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64

Query:    97 LNKKAEYELALEAYKKQLNDNGAGVSED 124
              + KA Y+  ++ Y     D   G  +D
Sbjct:    65 KSDKARYDREMKNYVPPKGDK-KGKKKD 91


>RGD|1585821 [details] [associations]
            symbol:LOC680968 "similar to High mobility group protein 1
            (HMG-1) (High mobility group protein B1) (Amphoterin)
            (Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
            [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] REFSEQ:XM_001059688 Ncbi:XP_001059688
        Length = 213

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 38/116 (32%), Positives = 57/116 (49%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NAPKRP SA+F+F  ++R   K   P   S+  + K  G+ W + +  +K PY +KA 
Sbjct:    91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAA 149

Query:    98 NKKAEYELALEAYKKQLNDNGA--GV--SEDSWKXXXXXXXXXXXXXEINDEAEQE 149
               K +YE  + AY+ +   + A  GV  +E S K             E  +E E+E
Sbjct:   150 KLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEDDEEDEEDEEEEEEEEE 205

 Score = 106 (42.4 bits), Expect = 8.9e-06, P = 8.9e-06
 Identities = 22/74 (29%), Positives = 38/74 (51%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPD-NKSVAAMGKAGGQKWKSMSEAEKAPYVQKA 96
             D   P+  +S+Y  F++  R+  K+  PD + + +   K   ++WK+MS  EK  +   A
Sbjct:     5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64

Query:    97 LNKKAEYELALEAY 110
                KA YE  ++ Y
Sbjct:    65 KADKARYEREMKTY 78


>UNIPROTKB|P0C6E5 [details] [associations]
            symbol:P0C6E5 "Putative high mobility group protein B3-like
            protein" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005694
            "chromosome" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
            PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0005694
            GO:GO:0003677 eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AC067852 Pfam:PF09011
            IPI:IPI00888935 ProteinModelPortal:P0C6E5 SMR:P0C6E5 STRING:P0C6E5
            PhosphoSite:P0C6E5 DMDM:205539816 PaxDb:P0C6E5 PRIDE:P0C6E5
            neXtProt:NX_P0C6E5 InParanoid:P0C6E5 PhylomeDB:P0C6E5
            Genevestigator:P0C6E5 Uniprot:P0C6E5
        Length = 187

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 29/82 (35%), Positives = 47/82 (57%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NAPKRP S +F+F  +F    K + P    +  + K  G+ WK+++++EK PY+ +A 
Sbjct:    88 DPNAPKRPPSGFFLFCSEFCPKSKSTNP-GIPIGDVAKKLGEMWKNLNDSEKQPYITQAA 146

Query:    98 NKKAEYELALEAYKKQLNDNGA 119
               K +YE  +  YK +   +GA
Sbjct:   147 KLKEKYEKDVAVYKSKGKSDGA 168

 Score = 97 (39.2 bits), Expect = 0.00032, P = 0.00032
 Identities = 22/74 (29%), Positives = 38/74 (51%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNK-SVAAMGKAGGQKWKSMSEAEKAPYVQKA 96
             D   PK  +SAY  F++  R+  K+  P    + A   K   ++WK+MS+ EK+ + + A
Sbjct:     5 DPKKPKGKMSAYAFFVQTCREEHKKKNPKVPINFAEFSKKCSERWKTMSKKEKSKFNELA 64

Query:    97 LNKKAEYELALEAY 110
                K  Y+  ++ Y
Sbjct:    65 KADKVHYDQEIKDY 78


>UNIPROTKB|P17741 [details] [associations]
            symbol:HMGB2 "High mobility group protein B2" species:9823
            "Sus scrofa" [GO:0006265 "DNA topological change" evidence=IDA]
            [GO:0003677 "DNA binding" evidence=IDA] [GO:0008301 "DNA binding,
            bending" evidence=ISS;IDA] [GO:0051103 "DNA ligation involved in
            DNA repair" evidence=IDA] [GO:0048471 "perinuclear region of
            cytoplasm" evidence=ISS] [GO:0006357 "regulation of transcription
            from RNA polymerase II promoter" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
            [GO:0000793 "condensed chromosome" evidence=ISS] [GO:0006288
            "base-excision repair, DNA ligation" evidence=ISS]
            InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
            GO:GO:0005634 GO:GO:0048471 GO:GO:0006357 eggNOG:COG5648
            GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0000793 Pfam:PF09011 GO:GO:0006265
            HOGENOM:HOG000197861 KO:K11295 HOVERGEN:HBG009000 GO:GO:0006288
            CTD:3148 OrthoDB:EOG4TTGK2 EMBL:J02895 PIR:A34719
            RefSeq:NP_999228.1 UniGene:Ssc.226 PDB:1J3C PDB:1J3D PDB:1J3X
            PDBsum:1J3C PDBsum:1J3D PDBsum:1J3X ProteinModelPortal:P17741
            SMR:P17741 GeneID:397130 KEGG:ssc:397130 EvolutionaryTrace:P17741
            Uniprot:P17741
        Length = 210

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 38/116 (32%), Positives = 51/116 (43%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NAPKRP SA+F+F  + R   K   P   S+    K  G+ W   S  +K PY QKA 
Sbjct:    91 DPNAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAA 149

Query:    98 NKKAEYELALEAY----KKQLNDNGAGVSEDSWKXXXXXXXXXXXXXEINDEAEQE 149
               K +YE  + AY    K +    G G    S K             E +++ E+E
Sbjct:   150 KLKEKYEKDIAAYRAKGKGEAGKKGPGRPTGSKKKNEPEDEEEEEEEEEDEDEEEE 205

 Score = 117 (46.2 bits), Expect = 4.5e-07, P = 4.5e-07
 Identities = 26/88 (29%), Positives = 45/88 (51%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNK-SVAAMGKAGGQKWKSMSEAEKAPYVQKA 96
             D N P+  +S+Y  F++  R+  K+  PD+  + A   K   ++WK+MS  EK+ +   A
Sbjct:     5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64

Query:    97 LNKKAEYELALEAYKKQLNDNGAGVSED 124
              + KA Y+  ++ Y     D   G  +D
Sbjct:    65 KSDKARYDREMKNYVPPKGDK-KGKKKD 91


>GENEDB_PFALCIPARUM|MAL8P1.72 [details] [associations]
            symbol:MAL8P1.72 "high mobility group protein,
            putative" species:5833 "Plasmodium falciparum" [GO:0006359
            "regulation of transcription from RNA polymerase III promoter"
            evidence=ISS] InterPro:IPR009071 Pfam:PF00505 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006359
            EMBL:AL844507 HOGENOM:HOG000197861 HSSP:P11632
            GenomeReviews:AL844507_GR ProtClustDB:PTZ00199
            RefSeq:XP_001349346.1 ProteinModelPortal:Q8IB14 IntAct:Q8IB14
            MINT:MINT-1562034 EnsemblProtists:MAL8P1.72:mRNA GeneID:2655422
            KEGG:pfa:MAL8P1.72 EuPathDB:PlasmoDB:PF3D7_0817900 OMA:SAYMFYV
            Uniprot:Q8IB14
        Length = 99

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 32/77 (41%), Positives = 45/77 (58%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPD-NKSVAAMGKAGGQKWKSMSEAEKAPYVQKA 96
             D  APKR LSAY  +++D R    +  P+  K VA +GK  G+ W  +S A+KAPY +KA
Sbjct:    20 DPLAPKRALSAYMFYVKDKRLEIIKEKPELAKDVAQVGKLIGEAWGQLSPAQKAPYEKKA 79

Query:    97 LNKKAEYELALEAYKKQ 113
                K  Y   +E Y+K+
Sbjct:    80 QLDKVRYSKEIEEYRKK 96


>UNIPROTKB|Q8IB14 [details] [associations]
            symbol:PfHMGB2 "High mobility group protein" species:36329
            "Plasmodium falciparum 3D7" [GO:0006359 "regulation of
            transcription from RNA polymerase III promoter" evidence=ISS]
            InterPro:IPR009071 Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006359 EMBL:AL844507
            HOGENOM:HOG000197861 HSSP:P11632 GenomeReviews:AL844507_GR
            ProtClustDB:PTZ00199 RefSeq:XP_001349346.1
            ProteinModelPortal:Q8IB14 IntAct:Q8IB14 MINT:MINT-1562034
            EnsemblProtists:MAL8P1.72:mRNA GeneID:2655422 KEGG:pfa:MAL8P1.72
            EuPathDB:PlasmoDB:PF3D7_0817900 OMA:SAYMFYV Uniprot:Q8IB14
        Length = 99

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 32/77 (41%), Positives = 45/77 (58%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPD-NKSVAAMGKAGGQKWKSMSEAEKAPYVQKA 96
             D  APKR LSAY  +++D R    +  P+  K VA +GK  G+ W  +S A+KAPY +KA
Sbjct:    20 DPLAPKRALSAYMFYVKDKRLEIIKEKPELAKDVAQVGKLIGEAWGQLSPAQKAPYEKKA 79

Query:    97 LNKKAEYELALEAYKKQ 113
                K  Y   +E Y+K+
Sbjct:    80 QLDKVRYSKEIEEYRKK 96


>UNIPROTKB|P26584 [details] [associations]
            symbol:HMGB2 "High mobility group protein B2" species:9031
            "Gallus gallus" [GO:0008301 "DNA binding, bending" evidence=ISS]
            [GO:0006288 "base-excision repair, DNA ligation" evidence=ISS]
            [GO:0000793 "condensed chromosome" evidence=ISS] [GO:0005737
            "cytoplasm" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
            [GO:0048471 "perinuclear region of cytoplasm" evidence=ISS]
            [GO:0006357 "regulation of transcription from RNA polymerase II
            promoter" evidence=ISS] InterPro:IPR009071 InterPro:IPR017967
            PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0048471
            GO:GO:0006357 GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0000793 Pfam:PF09011
            HOGENOM:HOG000197861 KO:K11295 HOVERGEN:HBG009000 GO:GO:0006288
            CTD:3148 OrthoDB:EOG4TTGK2 EMBL:M83235 EMBL:M80574 IPI:IPI00579203
            PIR:JC1114 PIR:JC1129 RefSeq:NP_990817.1 UniGene:Gga.4061
            ProteinModelPortal:P26584 SMR:P26584 STRING:P26584 PRIDE:P26584
            GeneID:396482 KEGG:gga:396482 eggNOG:NOG320947 InParanoid:P26584
            NextBio:20816521 Uniprot:P26584
        Length = 207

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 32/82 (39%), Positives = 42/82 (51%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NAPKRP SA+F+F  + R   K   P   S+    K  G+ W      +K PY QKA 
Sbjct:    91 DPNAPKRPPSAFFLFCSEHRPKIKNDHP-GLSIGDTAKKLGEMWSEQLAKDKQPYEQKAA 149

Query:    98 NKKAEYELALEAYK-KQLNDNG 118
               K +YE  + AY+ K  +D G
Sbjct:   150 KLKEKYEKDIAAYRAKSKSDAG 171

 Score = 113 (44.8 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 22/74 (29%), Positives = 40/74 (54%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNK-SVAAMGKAGGQKWKSMSEAEKAPYVQKA 96
             D N P+  +S+Y  F++  R+  K+  PD+  + A   +   ++WK+MS  EK  + + A
Sbjct:     5 DPNKPRGKMSSYAYFVQTCREEHKKKHPDSSVNFAEFSRKCSERWKTMSSKEKGKFEEMA 64

Query:    97 LNKKAEYELALEAY 110
                KA Y+  ++ Y
Sbjct:    65 KGDKARYDREMKNY 78


>RGD|1586285 [details] [associations]
            symbol:LOC691220 "hypothetical protein LOC691220" species:10116
            "Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
            InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:1560584
            RGD:1586285 RGD:1588313 GO:GO:0005634 GO:GO:0003677
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            Pfam:PF09011 OrthoDB:EOG4KWJV1 KO:K10802
            GeneTree:ENSGT00560000076717 UniGene:Rn.4121 EMBL:CH474054
            IPI:IPI00557035 RefSeq:NP_001102843.1 UniGene:Rn.151172
            Ensembl:ENSRNOT00000047553 GeneID:679571 KEGG:rno:679571 CTD:434174
            NextBio:716771 Uniprot:D3ZCR3
        Length = 214

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 37/116 (31%), Positives = 57/116 (49%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NAPKRP SA+F+F  ++R   K   P   S+  + K  G+ W + +  +K PY +KA 
Sbjct:    91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAA 149

Query:    98 NKKAEYELALEAYKKQLNDNGA--GV--SEDSWKXXXXXXXXXXXXXEINDEAEQE 149
               K +YE  + AY+ +   + A  GV  +E S K             E  +E E++
Sbjct:   150 KLKEKYEKDIPAYRAKGKPDAAKKGVVKAEKSKKKKEEEDNEEDEEDEEEEEEEED 205

 Score = 106 (42.4 bits), Expect = 9.1e-06, P = 9.1e-06
 Identities = 22/74 (29%), Positives = 38/74 (51%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPD-NKSVAAMGKAGGQKWKSMSEAEKAPYVQKA 96
             D   P+  +S+Y  F++  R+  K+  PD + + +   K   ++WK+MS  EK  +   A
Sbjct:     5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64

Query:    97 LNKKAEYELALEAY 110
                KA YE  ++ Y
Sbjct:    65 KADKARYEREMKTY 78


>RGD|1588313 [details] [associations]
            symbol:LOC679451 "similar to High mobility group protein 1
            (HMG-1) (High mobility group protein B1) (Amphoterin)
            (Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
            [GO:0003674 "molecular_function" evidence=ND] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR009071
            InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:1560584
            RGD:1586285 RGD:1588313 GO:GO:0005634 GO:GO:0003677
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            Pfam:PF09011 OrthoDB:EOG4KWJV1 KO:K10802
            GeneTree:ENSGT00560000076717 UniGene:Rn.4121 EMBL:CH474054
            IPI:IPI00557035 RefSeq:NP_001102843.1 UniGene:Rn.151172
            Ensembl:ENSRNOT00000047553 GeneID:679571 KEGG:rno:679571 CTD:434174
            NextBio:716771 Uniprot:D3ZCR3
        Length = 214

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 37/116 (31%), Positives = 57/116 (49%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NAPKRP SA+F+F  ++R   K   P   S+  + K  G+ W + +  +K PY +KA 
Sbjct:    91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAA 149

Query:    98 NKKAEYELALEAYKKQLNDNGA--GV--SEDSWKXXXXXXXXXXXXXEINDEAEQE 149
               K +YE  + AY+ +   + A  GV  +E S K             E  +E E++
Sbjct:   150 KLKEKYEKDIPAYRAKGKPDAAKKGVVKAEKSKKKKEEEDNEEDEEDEEEEEEEED 205

 Score = 106 (42.4 bits), Expect = 9.1e-06, P = 9.1e-06
 Identities = 22/74 (29%), Positives = 38/74 (51%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPD-NKSVAAMGKAGGQKWKSMSEAEKAPYVQKA 96
             D   P+  +S+Y  F++  R+  K+  PD + + +   K   ++WK+MS  EK  +   A
Sbjct:     5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64

Query:    97 LNKKAEYELALEAY 110
                KA YE  ++ Y
Sbjct:    65 KADKARYEREMKTY 78


>RGD|1591683 [details] [associations]
            symbol:LOC681718 "similar to High mobility group protein 1
            (HMG-1) (High mobility group protein B1) (Amphoterin)
            (Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
            [GO:0003674 "molecular_function" evidence=ND] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR009071
            InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:1591683
            GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
            GeneTree:ENSGT00560000076717 IPI:IPI00767302
            Ensembl:ENSRNOT00000045504 OMA:NNTASED ArrayExpress:F1MA29
            Uniprot:F1MA29
        Length = 215

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 37/116 (31%), Positives = 57/116 (49%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NAPKRP SA+F+F  ++R   K   P   S+  + K  G+ W + +  +K PY +KA 
Sbjct:    91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAA 149

Query:    98 NKKAEYELALEAYKKQLNDNGA--GV--SEDSWKXXXXXXXXXXXXXEINDEAEQE 149
               K +YE  + AY+ +   + A  GV  +E S K             E  +E E++
Sbjct:   150 KLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEDDEEDEEDEEEEEEEED 205

 Score = 106 (42.4 bits), Expect = 9.2e-06, P = 9.2e-06
 Identities = 22/74 (29%), Positives = 38/74 (51%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPD-NKSVAAMGKAGGQKWKSMSEAEKAPYVQKA 96
             D   P+  +S+Y  F++  R+  K+  PD + + +   K   ++WK+MS  EK  +   A
Sbjct:     5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64

Query:    97 LNKKAEYELALEAY 110
                KA YE  ++ Y
Sbjct:    65 KADKARYEREMKTY 78


>RGD|2802 [details] [associations]
            symbol:Hmgb1 "high mobility group box 1" species:10116 "Rattus
          norvegicus" [GO:0000122 "negative regulation of transcription from
          RNA polymerase II promoter" evidence=ISO] [GO:0000400 "four-way
          junction DNA binding" evidence=IDA] [GO:0000401 "open form four-way
          junction DNA binding" evidence=IDA] [GO:0000402 "crossed form
          four-way junction DNA binding" evidence=IDA] [GO:0000793 "condensed
          chromosome" evidence=ISO] [GO:0000902 "cell morphogenesis"
          evidence=IMP] [GO:0001654 "eye development" evidence=ISO] [GO:0001934
          "positive regulation of protein phosphorylation" evidence=ISO]
          [GO:0002053 "positive regulation of mesenchymal cell proliferation"
          evidence=IDA] [GO:0002437 "inflammatory response to antigenic
          stimulus" evidence=ISO] [GO:0003681 "bent DNA binding" evidence=IDA]
          [GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0003697
          "single-stranded DNA binding" evidence=IDA] [GO:0003700
          "sequence-specific DNA binding transcription factor activity"
          evidence=ISO] [GO:0005125 "cytokine activity" evidence=ISO;IDA]
          [GO:0005515 "protein binding" evidence=IPI] [GO:0005615
          "extracellular space" evidence=ISO;IDA] [GO:0005634 "nucleus"
          evidence=ISO;IDA] [GO:0005694 "chromosome" evidence=IEA] [GO:0005737
          "cytoplasm" evidence=ISO;IDA] [GO:0006288 "base-excision repair, DNA
          ligation" evidence=ISO] [GO:0006357 "regulation of transcription from
          RNA polymerase II promoter" evidence=ISO] [GO:0006935 "chemotaxis"
          evidence=IDA] [GO:0007399 "nervous system development" evidence=IMP]
          [GO:0007623 "circadian rhythm" evidence=IEP] [GO:0008097 "5S rRNA
          binding" evidence=IDA] [GO:0008134 "transcription factor binding"
          evidence=ISO;IDA] [GO:0008156 "negative regulation of DNA
          replication" evidence=IDA] [GO:0008201 "heparin binding"
          evidence=IDA;TAS] [GO:0008284 "positive regulation of cell
          proliferation" evidence=IDA] [GO:0008301 "DNA binding, bending"
          evidence=ISO;IDA] [GO:0009408 "response to heat" evidence=IEP]
          [GO:0009749 "response to glucose stimulus" evidence=IEP] [GO:0009986
          "cell surface" evidence=ISO] [GO:0010858 "calcium-dependent protein
          kinase regulator activity" evidence=ISO] [GO:0010942 "positive
          regulation of cell death" evidence=IMP] [GO:0010976 "positive
          regulation of neuron projection development" evidence=IMP]
          [GO:0014911 "positive regulation of smooth muscle cell migration"
          evidence=IMP] [GO:0017055 "negative regulation of RNA polymerase II
          transcriptional preinitiation complex assembly" evidence=ISO]
          [GO:0030295 "protein kinase activator activity" evidence=ISO]
          [GO:0030324 "lung development" evidence=ISO] [GO:0030335 "positive
          regulation of cell migration" evidence=IDA] [GO:0031175 "neuron
          projection development" evidence=IGI] [GO:0031532 "actin cytoskeleton
          reorganization" evidence=IMP] [GO:0032392 "DNA geometric change"
          evidence=IDA] [GO:0032496 "response to lipopolysaccharide"
          evidence=IEP] [GO:0032868 "response to insulin stimulus"
          evidence=IEP] [GO:0033034 "positive regulation of myeloid cell
          apoptotic process" evidence=IDA] [GO:0033151 "V(D)J recombination"
          evidence=ISO] [GO:0034341 "response to interferon-gamma"
          evidence=IMP] [GO:0042277 "peptide binding" evidence=IDA] [GO:0042493
          "response to drug" evidence=IEP] [GO:0043005 "neuron projection"
          evidence=ISO] [GO:0043065 "positive regulation of apoptotic process"
          evidence=ISO;IMP] [GO:0043280 "positive regulation of cysteine-type
          endopeptidase activity involved in apoptotic process" evidence=ISO]
          [GO:0043388 "positive regulation of DNA binding" evidence=ISO]
          [GO:0045639 "positive regulation of myeloid cell differentiation"
          evidence=ISO] [GO:0045663 "positive regulation of myoblast
          differentiation" evidence=IMP] [GO:0045819 "positive regulation of
          glycogen catabolic process" evidence=ISO] [GO:0045931 "positive
          regulation of mitotic cell cycle" evidence=IDA] [GO:0045944 "positive
          regulation of transcription from RNA polymerase II promoter"
          evidence=ISO] [GO:0046983 "protein dimerization activity"
          evidence=IDA] [GO:0050727 "regulation of inflammatory response"
          evidence=IDA] [GO:0050786 "RAGE receptor binding" evidence=IMP;IPI]
          [GO:0050831 "male-specific defense response to bacterium"
          evidence=IDA] [GO:0050930 "induction of positive chemotaxis"
          evidence=IDA] [GO:0051384 "response to glucocorticoid stimulus"
          evidence=ISO] [GO:0051450 "myoblast proliferation" evidence=IMP]
          [GO:0051861 "glycolipid binding" evidence=IDA] [GO:0070491
          "repressing transcription factor binding" evidence=ISO] [GO:0071347
          "cellular response to interleukin-1" evidence=IEP] [GO:0017053
          "transcriptional repressor complex" evidence=ISO] InterPro:IPR009071
          InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:2802
          GO:GO:0005634 GO:GO:0005737 GO:GO:0005694 GO:GO:0005615 GO:GO:0010976
          GO:GO:0042493 GO:GO:0045931 GO:GO:0007623 GO:GO:0009749 GO:GO:0032496
          GO:GO:0008201 GO:GO:0009408 GO:GO:0006935 GO:GO:0032868 GO:GO:0046983
          eggNOG:COG5648 GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398
          SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0031532 GO:GO:0050727
          GO:GO:0042277 GO:GO:0003690 GO:GO:0003697 GO:GO:0000902 GO:GO:0033034
          GO:GO:0005125 GO:GO:0008134 GO:GO:0031175 GO:GO:0071347 GO:GO:0050930
          GO:GO:0008156 GO:GO:0034341 GO:GO:0002053 GO:GO:0014911 GO:GO:0045663
          GO:GO:0008097 GO:GO:0003681 GO:GO:0051861 Pfam:PF09011 GO:GO:0051450
          OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861 KO:K10802 CTD:3146
          HOVERGEN:HBG009000 GO:GO:0050786 EMBL:M64986 EMBL:Y00463
          EMBL:AF275734 EMBL:BC061779 EMBL:BC081839 EMBL:BC088402
          IPI:IPI00555214 PIR:A41175 RefSeq:NP_037095.1 UniGene:Rn.144565
          UniGene:Rn.15185 UniGene:Rn.4121 PDB:1AAB PDB:1CKT PDB:1HME PDB:1HMF
          PDB:2GZK PDBsum:1AAB PDBsum:1CKT PDBsum:1HME PDBsum:1HMF PDBsum:2GZK
          ProteinModelPortal:P63159 SMR:P63159 STRING:P63159 PhosphoSite:P63159
          PRIDE:P63159 GeneID:25459 KEGG:rno:25459 InParanoid:P63159
          EvolutionaryTrace:P63159 NextBio:606729 ArrayExpress:P63159
          Genevestigator:P63159 GermOnline:ENSRNOG00000030351 GO:GO:0000402
          GO:GO:0000401 GO:GO:0032392 GO:GO:0050831 Uniprot:P63159
        Length = 215

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 37/116 (31%), Positives = 57/116 (49%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NAPKRP SA+F+F  ++R   K   P   S+  + K  G+ W + +  +K PY +KA 
Sbjct:    91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAA 149

Query:    98 NKKAEYELALEAYKKQLNDNGA--GV--SEDSWKXXXXXXXXXXXXXEINDEAEQE 149
               K +YE  + AY+ +   + A  GV  +E S K             E  +E E++
Sbjct:   150 KLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEDDEEDEEDEEEEEEEED 205

 Score = 106 (42.4 bits), Expect = 9.2e-06, P = 9.2e-06
 Identities = 22/74 (29%), Positives = 38/74 (51%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPD-NKSVAAMGKAGGQKWKSMSEAEKAPYVQKA 96
             D   P+  +S+Y  F++  R+  K+  PD + + +   K   ++WK+MS  EK  +   A
Sbjct:     5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64

Query:    97 LNKKAEYELALEAY 110
                KA YE  ++ Y
Sbjct:    65 KADKARYEREMKTY 78


>UNIPROTKB|P07156 [details] [associations]
            symbol:HMGB1 "High mobility group protein B1" species:10029
            "Cricetulus griseus" [GO:0000793 "condensed chromosome"
            evidence=ISS] [GO:0006288 "base-excision repair, DNA ligation"
            evidence=ISS] [GO:0017055 "negative regulation of RNA polymerase II
            transcriptional preinitiation complex assembly" evidence=ISS]
            InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
            GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0000793 Pfam:PF09011
            GO:GO:0017055 HOVERGEN:HBG009000 GO:GO:0006288 EMBL:Y00365
            PIR:A27853 PDB:1HSM PDB:1HSN PDB:1NHM PDB:1NHN PDBsum:1HSM
            PDBsum:1HSN PDBsum:1NHM PDBsum:1NHN ProteinModelPortal:P07156
            SMR:P07156 PRIDE:P07156 EvolutionaryTrace:P07156 Uniprot:P07156
        Length = 180

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 37/116 (31%), Positives = 57/116 (49%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NAPKRP SA+F+F  ++R   K   P   S+  + K  G+ W + +  +K PY +KA 
Sbjct:    56 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAA 114

Query:    98 NKKAEYELALEAYKKQLNDNGA--GV--SEDSWKXXXXXXXXXXXXXEINDEAEQE 149
               K +YE  + AY+ +   + A  GV  +E S K             E  +E E++
Sbjct:   115 KLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEDDEEDEEDEEEEEEEED 170


>UNIPROTKB|P10103 [details] [associations]
            symbol:HMGB1 "High mobility group protein B1" species:9913
            "Bos taurus" [GO:0050918 "positive chemotaxis" evidence=IDA]
            [GO:0017055 "negative regulation of RNA polymerase II
            transcriptional preinitiation complex assembly" evidence=ISS]
            [GO:0006288 "base-excision repair, DNA ligation" evidence=ISS]
            [GO:0000793 "condensed chromosome" evidence=ISS] [GO:0033151 "V(D)J
            recombination" evidence=IDA] [GO:0003684 "damaged DNA binding"
            evidence=IDA] [GO:0006357 "regulation of transcription from RNA
            polymerase II promoter" evidence=ISS] [GO:0006338 "chromatin
            remodeling" evidence=NAS] [GO:0042393 "histone binding"
            evidence=IDA] [GO:0003697 "single-stranded DNA binding"
            evidence=IDA] [GO:0006265 "DNA topological change" evidence=IDA]
            [GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0008301
            "DNA binding, bending" evidence=IDA] [GO:0001773 "myeloid dendritic
            cell activation" evidence=IDA] [GO:0042056 "chemoattractant
            activity" evidence=IDA] [GO:0002407 "dendritic cell chemotaxis"
            evidence=IDA] [GO:0006310 "DNA recombination" evidence=IDA]
            [GO:0070491 "repressing transcription factor binding" evidence=IEA]
            [GO:0043388 "positive regulation of DNA binding" evidence=IEA]
            [GO:0043280 "positive regulation of cysteine-type endopeptidase
            activity involved in apoptotic process" evidence=IEA] [GO:0043065
            "positive regulation of apoptotic process" evidence=IEA]
            [GO:0017053 "transcriptional repressor complex" evidence=IEA]
            [GO:0009986 "cell surface" evidence=IEA] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IEA] [GO:0002437 "inflammatory response to antigenic
            stimulus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
            PROSITE:PS00353 Pfam:PF00505 GO:GO:0017053 GO:GO:0009986
            GO:GO:0005730 GO:GO:0002437 GO:GO:0003684 GO:GO:0045944
            GO:GO:0003700 GO:GO:0006338 eggNOG:COG5648 GO:GO:0008301
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0043065 GO:GO:0003690 GO:GO:0003697 GO:GO:0043280
            GO:GO:0042393 GO:GO:0000793 GO:GO:0042056 GO:GO:0043388
            GO:GO:0002407 GO:GO:0001773 Pfam:PF09011 GO:GO:0033151
            GO:GO:0006265 OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861 OMA:GEDAMRK
            KO:K10802 GO:GO:0017055 EMBL:X12796 EMBL:BT030587 EMBL:BC102929
            EMBL:M26110 IPI:IPI00710114 PIR:S01947 RefSeq:NP_788785.1
            UniGene:Bt.49650 ProteinModelPortal:P10103 SMR:P10103 STRING:P10103
            PRIDE:P10103 Ensembl:ENSBTAT00000024094 GeneID:282691
            KEGG:bta:282691 CTD:3146 GeneTree:ENSGT00560000076717
            HOVERGEN:HBG009000 InParanoid:P10103 NextBio:20806359 GO:GO:0006288
            Uniprot:P10103
        Length = 215

 Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 37/116 (31%), Positives = 57/116 (49%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NAPKRP SA+F+F  ++R   K   P   S+  + K  G+ W + +  +K PY +KA 
Sbjct:    91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAA 149

Query:    98 NKKAEYELALEAYKKQLNDNGA--GV--SEDSWKXXXXXXXXXXXXXEINDEAEQE 149
               K +YE  + AY+ +   + A  GV  +E S K             E  +E E++
Sbjct:   150 KLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEEDEED 205

 Score = 106 (42.4 bits), Expect = 9.2e-06, P = 9.2e-06
 Identities = 22/74 (29%), Positives = 38/74 (51%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPD-NKSVAAMGKAGGQKWKSMSEAEKAPYVQKA 96
             D   P+  +S+Y  F++  R+  K+  PD + + +   K   ++WK+MS  EK  +   A
Sbjct:     5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64

Query:    97 LNKKAEYELALEAY 110
                KA YE  ++ Y
Sbjct:    65 KADKARYEREMKTY 78


>UNIPROTKB|Q6YKA4 [details] [associations]
            symbol:HMGB1 "High mobility group protein B1" species:9615
            "Canis lupus familiaris" [GO:0070491 "repressing transcription
            factor binding" evidence=IEA] [GO:0043388 "positive regulation of
            DNA binding" evidence=IEA] [GO:0043280 "positive regulation of
            cysteine-type endopeptidase activity involved in apoptotic process"
            evidence=IEA] [GO:0043065 "positive regulation of apoptotic
            process" evidence=IEA] [GO:0033151 "V(D)J recombination"
            evidence=IEA] [GO:0017055 "negative regulation of RNA polymerase II
            transcriptional preinitiation complex assembly" evidence=IEA]
            [GO:0017053 "transcriptional repressor complex" evidence=IEA]
            [GO:0009986 "cell surface" evidence=IEA] [GO:0006288 "base-excision
            repair, DNA ligation" evidence=IEA] [GO:0003700 "sequence-specific
            DNA binding transcription factor activity" evidence=IEA]
            [GO:0002437 "inflammatory response to antigenic stimulus"
            evidence=IEA] [GO:0000793 "condensed chromosome" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
            InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0017053
            GO:GO:0009986 GO:GO:0005730 GO:GO:0002437 GO:GO:0003677
            GO:GO:0045944 GO:GO:0003700 eggNOG:COG5648 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0043065
            GO:GO:0043280 GO:GO:0000793 GO:GO:0043388 Pfam:PF09011
            GO:GO:0033151 OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861 OMA:GEDAMRK
            KO:K10802 GO:GO:0017055 CTD:3146 GeneTree:ENSGT00560000076717
            HOVERGEN:HBG009000 GO:GO:0006288 EMBL:AY135519 EMBL:AY135521
            RefSeq:NP_001002937.1 UniGene:Cfa.416 ProteinModelPortal:Q6YKA4
            SMR:Q6YKA4 STRING:Q6YKA4 PRIDE:Q6YKA4 Ensembl:ENSCAFT00000010639
            GeneID:403170 KEGG:cfa:403170 InParanoid:Q6YKA4 NextBio:20816914
            Uniprot:Q6YKA4
        Length = 215

 Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 37/116 (31%), Positives = 57/116 (49%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NAPKRP SA+F+F  ++R   K   P   S+  + K  G+ W + +  +K PY +KA 
Sbjct:    91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAA 149

Query:    98 NKKAEYELALEAYKKQLNDNGA--GV--SEDSWKXXXXXXXXXXXXXEINDEAEQE 149
               K +YE  + AY+ +   + A  GV  +E S K             E  +E E++
Sbjct:   150 KLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEEDEED 205

 Score = 106 (42.4 bits), Expect = 9.2e-06, P = 9.2e-06
 Identities = 22/74 (29%), Positives = 38/74 (51%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPD-NKSVAAMGKAGGQKWKSMSEAEKAPYVQKA 96
             D   P+  +S+Y  F++  R+  K+  PD + + +   K   ++WK+MS  EK  +   A
Sbjct:     5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64

Query:    97 LNKKAEYELALEAY 110
                KA YE  ++ Y
Sbjct:    65 KADKARYEREMKTY 78


>UNIPROTKB|P09429 [details] [associations]
            symbol:HMGB1 "High mobility group protein B1" species:9606
            "Homo sapiens" [GO:0001654 "eye development" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0010858
            "calcium-dependent protein kinase regulator activity" evidence=IEA]
            [GO:0030295 "protein kinase activator activity" evidence=IEA]
            [GO:0030324 "lung development" evidence=IEA] [GO:0043005 "neuron
            projection" evidence=IEA] [GO:0045639 "positive regulation of
            myeloid cell differentiation" evidence=IEA] [GO:0045819 "positive
            regulation of glycogen catabolic process" evidence=IEA] [GO:0051384
            "response to glucocorticoid stimulus" evidence=IEA] [GO:2000426
            "negative regulation of apoptotic cell clearance" evidence=IEA]
            [GO:0000793 "condensed chromosome" evidence=IDA] [GO:0006357
            "regulation of transcription from RNA polymerase II promoter"
            evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0006288 "base-excision repair, DNA ligation" evidence=IDA]
            [GO:0017055 "negative regulation of RNA polymerase II
            transcriptional preinitiation complex assembly" evidence=IDA]
            [GO:0031175 "neuron projection development" evidence=ISS]
            [GO:0050786 "RAGE receptor binding" evidence=ISS] [GO:0043388
            "positive regulation of DNA binding" evidence=IDA] [GO:0006310 "DNA
            recombination" evidence=ISS] [GO:0043280 "positive regulation of
            cysteine-type endopeptidase activity involved in apoptotic process"
            evidence=IDA] [GO:0043065 "positive regulation of apoptotic
            process" evidence=IDA] [GO:0005125 "cytokine activity"
            evidence=ISS] [GO:0001773 "myeloid dendritic cell activation"
            evidence=ISS] [GO:0002407 "dendritic cell chemotaxis" evidence=ISS]
            [GO:0042056 "chemoattractant activity" evidence=ISS] [GO:0005634
            "nucleus" evidence=IDA] [GO:0051103 "DNA ligation involved in DNA
            repair" evidence=ISS] [GO:0009986 "cell surface" evidence=IDA]
            [GO:0002437 "inflammatory response to antigenic stimulus"
            evidence=IEP] [GO:0005615 "extracellular space" evidence=IDA]
            [GO:0006265 "DNA topological change" evidence=ISS] [GO:0003690
            "double-stranded DNA binding" evidence=ISS] [GO:0003697
            "single-stranded DNA binding" evidence=ISS] [GO:0008301 "DNA
            binding, bending" evidence=ISS;IMP] [GO:0000122 "negative
            regulation of transcription from RNA polymerase II promoter"
            evidence=IMP] [GO:0017053 "transcriptional repressor complex"
            evidence=IDA] [GO:0033151 "V(D)J recombination" evidence=IDA]
            [GO:0003684 "damaged DNA binding" evidence=ISS] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IDA] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=IDA] [GO:0008134
            "transcription factor binding" evidence=IPI] [GO:0070491
            "repressing transcription factor binding" evidence=IPI] [GO:0005576
            "extracellular region" evidence=TAS] [GO:0005654 "nucleoplasm"
            evidence=TAS] [GO:0006309 "apoptotic DNA fragmentation"
            evidence=TAS] [GO:0006915 "apoptotic process" evidence=TAS]
            [GO:0006921 "cellular component disassembly involved in execution
            phase of apoptosis" evidence=TAS] [GO:0045087 "innate immune
            response" evidence=TAS] [GO:0050918 "positive chemotaxis"
            evidence=ISS] Reactome:REACT_578 InterPro:IPR009071
            InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005737
            Reactome:REACT_6900 GO:GO:0005615 GO:GO:0005654 GO:GO:0009986
            GO:GO:0002437 GO:GO:0003684 GO:GO:0030324 EMBL:CH471075
            GO:GO:0045944 GO:GO:0051384 GO:GO:0043005 GO:GO:0045087
            GO:GO:0003700 GO:GO:0045860 GO:GO:0030295 eggNOG:COG5648
            GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0043065 GO:GO:0003690 GO:GO:0003697
            GO:GO:0043280 GO:GO:0045819 GO:GO:0005125 GO:GO:0006309
            GO:GO:0000793 Pathway_Interaction_DB:amb2_neutrophils_pathway
            GO:GO:0042056 GO:GO:0031175 GO:GO:0001654 GO:GO:0043388
            GO:GO:0002407 GO:GO:0001773 Pfam:PF09011 GO:GO:0033151
            GO:GO:0006265 GO:GO:0045639 OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861
            OMA:GEDAMRK KO:K10802 GO:GO:0017055 CTD:3146 HOVERGEN:HBG009000
            GO:GO:0006288 EMBL:X12597 EMBL:U51677 EMBL:D63874 EMBL:EF157968
            EMBL:AY377859 EMBL:AK291494 EMBL:AK122825 EMBL:CR749614
            EMBL:CR456863 EMBL:BT006940 EMBL:BT020159 EMBL:EU012027
            EMBL:AL353648 EMBL:BC003378 EMBL:BC030981 EMBL:BC066889
            EMBL:BC067732 EMBL:BC141844 IPI:IPI00419258 PIR:S02826
            RefSeq:NP_002119.1 UniGene:Hs.434102 UniGene:Hs.593339
            UniGene:Hs.596078 UniGene:Hs.741195 PDB:2LY4 PDB:2YRQ PDBsum:2LY4
            PDBsum:2YRQ ProteinModelPortal:P09429 SMR:P09429 DIP:DIP-24195N
            IntAct:P09429 MINT:MINT-153055 STRING:P09429 PhosphoSite:P09429
            DMDM:123369 DOSAC-COBS-2DPAGE:P09429 PaxDb:P09429
            PeptideAtlas:P09429 PRIDE:P09429 DNASU:3146 Ensembl:ENST00000339872
            Ensembl:ENST00000341423 Ensembl:ENST00000399494
            Ensembl:ENST00000405805 GeneID:3146 KEGG:hsa:3146 UCSC:uc001usx.3
            GeneCards:GC13M031032 H-InvDB:HIX0030745 HGNC:HGNC:4983
            HPA:CAB005873 HPA:HPA003506 MIM:163905 neXtProt:NX_P09429
            PharmGKB:PA188 InParanoid:P09429 PhylomeDB:P09429 ChiTaRS:HMGB1
            EvolutionaryTrace:P09429 GenomeRNAi:3146 NextBio:12470
            ArrayExpress:P09429 Bgee:P09429 CleanEx:HS_HMGB1
            Genevestigator:P09429 GermOnline:ENSG00000189403 GO:GO:0010858
            GO:GO:0050786 GO:GO:2000426 Uniprot:P09429
        Length = 215

 Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 37/116 (31%), Positives = 57/116 (49%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NAPKRP SA+F+F  ++R   K   P   S+  + K  G+ W + +  +K PY +KA 
Sbjct:    91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAA 149

Query:    98 NKKAEYELALEAYKKQLNDNGA--GV--SEDSWKXXXXXXXXXXXXXEINDEAEQE 149
               K +YE  + AY+ +   + A  GV  +E S K             E  +E E++
Sbjct:   150 KLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEEDEED 205

 Score = 106 (42.4 bits), Expect = 9.2e-06, P = 9.2e-06
 Identities = 22/74 (29%), Positives = 38/74 (51%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPD-NKSVAAMGKAGGQKWKSMSEAEKAPYVQKA 96
             D   P+  +S+Y  F++  R+  K+  PD + + +   K   ++WK+MS  EK  +   A
Sbjct:     5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64

Query:    97 LNKKAEYELALEAY 110
                KA YE  ++ Y
Sbjct:    65 KADKARYEREMKTY 78


>UNIPROTKB|F2Z594 [details] [associations]
            symbol:HMGB1 "High mobility group protein B1" species:9823
            "Sus scrofa" [GO:2000426 "negative regulation of apoptotic cell
            clearance" evidence=IEA] [GO:0070491 "repressing transcription
            factor binding" evidence=IEA] [GO:0051384 "response to
            glucocorticoid stimulus" evidence=IEA] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=IEA] [GO:0045819 "positive regulation of glycogen
            catabolic process" evidence=IEA] [GO:0045639 "positive regulation
            of myeloid cell differentiation" evidence=IEA] [GO:0043388
            "positive regulation of DNA binding" evidence=IEA] [GO:0043280
            "positive regulation of cysteine-type endopeptidase activity
            involved in apoptotic process" evidence=IEA] [GO:0043065 "positive
            regulation of apoptotic process" evidence=IEA] [GO:0043005 "neuron
            projection" evidence=IEA] [GO:0033151 "V(D)J recombination"
            evidence=IEA] [GO:0030324 "lung development" evidence=IEA]
            [GO:0030295 "protein kinase activator activity" evidence=IEA]
            [GO:0017055 "negative regulation of RNA polymerase II
            transcriptional preinitiation complex assembly" evidence=IEA]
            [GO:0017053 "transcriptional repressor complex" evidence=IEA]
            [GO:0010858 "calcium-dependent protein kinase regulator activity"
            evidence=IEA] [GO:0009986 "cell surface" evidence=IEA] [GO:0006288
            "base-excision repair, DNA ligation" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0005615 "extracellular space"
            evidence=IEA] [GO:0005125 "cytokine activity" evidence=IEA]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=IEA] [GO:0002437 "inflammatory response to
            antigenic stimulus" evidence=IEA] [GO:0001654 "eye development"
            evidence=IEA] [GO:0000793 "condensed chromosome" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
            InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005737
            GO:GO:0017053 GO:GO:0005615 GO:GO:0009986 GO:GO:0005730
            GO:GO:0002437 GO:GO:0003677 GO:GO:0030324 GO:GO:0045944
            GO:GO:0051384 GO:GO:0043005 GO:GO:0003700 GO:GO:0045860
            GO:GO:0030295 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0043065 GO:GO:0043280 GO:GO:0045819
            GO:GO:0000793 GO:GO:0001654 GO:GO:0043388 Pfam:PF09011
            GO:GO:0033151 GO:GO:0045639 OMA:GEDAMRK GO:GO:0017055
            GeneTree:ENSGT00560000076717 GO:GO:0006288 GO:GO:0010858
            GO:GO:2000426 EMBL:CU062617 ProteinModelPortal:F2Z594 SMR:F2Z594
            PRIDE:F2Z594 Ensembl:ENSSSCT00000010221 Uniprot:F2Z594
        Length = 215

 Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 37/116 (31%), Positives = 57/116 (49%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NAPKRP SA+F+F  ++R   K   P   S+  + K  G+ W + +  +K PY +KA 
Sbjct:    91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAA 149

Query:    98 NKKAEYELALEAYKKQLNDNGA--GV--SEDSWKXXXXXXXXXXXXXEINDEAEQE 149
               K +YE  + AY+ +   + A  GV  +E S K             E  +E E++
Sbjct:   150 KLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEEDEED 205

 Score = 106 (42.4 bits), Expect = 9.2e-06, P = 9.2e-06
 Identities = 22/74 (29%), Positives = 38/74 (51%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPD-NKSVAAMGKAGGQKWKSMSEAEKAPYVQKA 96
             D   P+  +S+Y  F++  R+  K+  PD + + +   K   ++WK+MS  EK  +   A
Sbjct:     5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64

Query:    97 LNKKAEYELALEAY 110
                KA YE  ++ Y
Sbjct:    65 KADKARYEREMKTY 78


>MGI|MGI:1916567 [details] [associations]
            symbol:Hmgb4 "high-mobility group box 4" species:10090 "Mus
            musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
            InterPro:IPR009071 PROSITE:PS00353 MGI:MGI:1916567 Pfam:PF00505
            GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
            GeneTree:ENSGT00560000076898 HOGENOM:HOG000197861
            HOVERGEN:HBG009000 CTD:127540 KO:K11297 OMA:RYQEEMM
            OrthoDB:EOG4255TS HSSP:P17741 EMBL:AK005588 EMBL:BC061030
            IPI:IPI00118961 RefSeq:NP_081312.2 UniGene:Mm.331893
            ProteinModelPortal:Q6P8W9 SMR:Q6P8W9 PhosphoSite:Q6P8W9
            PRIDE:Q6P8W9 Ensembl:ENSMUST00000053830 GeneID:69317 KEGG:mmu:69317
            eggNOG:NOG288392 InParanoid:Q6P8W9 NextBio:329122 Bgee:Q6P8W9
            CleanEx:MM_HMGB4 Genevestigator:Q6P8W9 Uniprot:Q6P8W9
        Length = 181

 Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 30/76 (39%), Positives = 43/76 (56%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D  AP++P S++ +F  D     K+  PD  +V  + KA G+ W +  EAEK PY QKA 
Sbjct:    89 DPKAPRKPPSSFLLFSRDHYAMLKQENPD-WTVVQVAKAAGKMWSTTDEAEKKPYEQKAA 147

Query:    98 NKKAEYELALEAYKKQ 113
               +A+Y    EAY+ Q
Sbjct:   148 LMRAKYFEEQEAYRNQ 163

 Score = 104 (41.7 bits), Expect = 8.4e-06, P = 8.4e-06
 Identities = 26/74 (35%), Positives = 37/74 (50%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNK-SVAAMGKAGGQKWKSMSEAEKAPYVQKA 96
             D   PK  +S+Y  FM +FR  FKE  P+         +   +KW+S+S+ EKA Y   A
Sbjct:     5 DQLRPKVNVSSYIHFMLNFRNKFKEQQPNTYLGFKEFSRKCSEKWRSISKHEKAKYEALA 64

Query:    97 LNKKAEYELALEAY 110
                KA Y+  +  Y
Sbjct:    65 ELDKARYQQEMMNY 78


>RGD|1589841 [details] [associations]
            symbol:LOC690940 "similar to High mobility group protein 1
            (HMG-1) (High mobility group protein B1) (Amphoterin)
            (Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
            [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] REFSEQ:XM_001076232 Ncbi:XP_001076232
        Length = 214

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 37/116 (31%), Positives = 56/116 (48%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NAPKRP SA+F+F  ++R   K   P   S+  + K  G+ W + +  +K PY +KA 
Sbjct:    91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTASDDKQPYEKKAA 149

Query:    98 NKKAEYELALEAYKKQLNDNGA--GV--SEDSWKXXXXXXXXXXXXXEINDEAEQE 149
               K +YE    AY+ +   + A  GV  +E S K             E  +E E++
Sbjct:   150 KLKEKYEKDTAAYRAKGKPDAAKKGVVKAEKSKKKKEEEDDEEDEEDEEEEEEEED 205

 Score = 107 (42.7 bits), Expect = 6.9e-06, P = 6.9e-06
 Identities = 22/74 (29%), Positives = 39/74 (52%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPD-NKSVAAMGKAGGQKWKSMSEAEKAPYVQKA 96
             D   P+  +S+Y  F++  R+  K+  PD + + + + K   ++WK+MS  EK  +   A
Sbjct:     5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEVSKKCSERWKTMSAKEKGKFEDMA 64

Query:    97 LNKKAEYELALEAY 110
                KA YE  ++ Y
Sbjct:    65 KADKARYEREMKTY 78


>RGD|1593466 [details] [associations]
            symbol:LOC689398 "similar to High mobility group protein 1
            (HMG-1) (High mobility group protein B1) (Amphoterin)
            (Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
            [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] REFSEQ:XM_001068941 Ncbi:XP_001068941
        Length = 214

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 37/116 (31%), Positives = 56/116 (48%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NAPKRP SA+F+F  ++R   K   P   S+  + K  G+ W + +  +K PY +KA 
Sbjct:    91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTASDDKQPYEKKAA 149

Query:    98 NKKAEYELALEAYKKQLNDNGA--GV--SEDSWKXXXXXXXXXXXXXEINDEAEQE 149
               K +YE    AY+ +   + A  GV  +E S K             E  +E E++
Sbjct:   150 KLKEKYEKDTAAYRAKGKPDAAKKGVVKAEKSKKKKEEEDDEEDEEDEEEEEEEED 205

 Score = 107 (42.7 bits), Expect = 6.9e-06, P = 6.9e-06
 Identities = 22/74 (29%), Positives = 39/74 (52%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPD-NKSVAAMGKAGGQKWKSMSEAEKAPYVQKA 96
             D   P+  +S+Y  F++  R+  K+  PD + + + + K   ++WK+MS  EK  +   A
Sbjct:     5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEVSKKCSERWKTMSAKEKGKFEDMA 64

Query:    97 LNKKAEYELALEAY 110
                KA YE  ++ Y
Sbjct:    65 KADKARYEREMKTY 78


>UNIPROTKB|P12682 [details] [associations]
            symbol:HMGB1 "High mobility group protein B1" species:9823
            "Sus scrofa" [GO:0051103 "DNA ligation involved in DNA repair"
            evidence=IDA] [GO:0017055 "negative regulation of RNA polymerase II
            transcriptional preinitiation complex assembly" evidence=ISS]
            [GO:0000793 "condensed chromosome" evidence=ISS] [GO:0006288
            "base-excision repair, DNA ligation" evidence=ISS] [GO:0005634
            "nucleus" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
            GO:GO:0005634 GO:GO:0003677 eggNOG:COG5648 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0000793
            Pfam:PF09011 OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861 KO:K10802
            GO:GO:0017055 CTD:3146 HOVERGEN:HBG009000 GO:GO:0006288 EMBL:M21683
            PIR:A28897 RefSeq:NP_001004034.1 UniGene:Ssc.22696
            ProteinModelPortal:P12682 SMR:P12682 STRING:P12682 PRIDE:P12682
            GeneID:445521 KEGG:ssc:445521 Uniprot:P12682
        Length = 215

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 37/116 (31%), Positives = 57/116 (49%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NAPKRP SA+F+F  ++R   K   P   S+  + K  G+ W + +  +K PY +KA 
Sbjct:    91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKHPYEKKAA 149

Query:    98 NKKAEYELALEAYKKQLNDNGA--GV--SEDSWKXXXXXXXXXXXXXEINDEAEQE 149
               K +YE  + AY+ +   + A  GV  +E S K             E  +E E++
Sbjct:   150 KLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEEDEED 205

 Score = 106 (42.4 bits), Expect = 9.2e-06, P = 9.2e-06
 Identities = 22/74 (29%), Positives = 38/74 (51%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPD-NKSVAAMGKAGGQKWKSMSEAEKAPYVQKA 96
             D   P+  +S+Y  F++  R+  K+  PD + + +   K   ++WK+MS  EK  +   A
Sbjct:     5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64

Query:    97 LNKKAEYELALEAY 110
                KA YE  ++ Y
Sbjct:    65 KADKARYEREMKTY 78


>RGD|1596979 [details] [associations]
            symbol:LOC678705 "hypothetical protein LOC678705" species:10116
            "Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] REFSEQ:XM_001053005
            Ncbi:XP_001053005
        Length = 214

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 37/116 (31%), Positives = 57/116 (49%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NAPKRP SA+F+F  ++R   K   P   S+  + K  G+ W + +  +K PY +KA 
Sbjct:    91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEIWNNTAADDKQPYEKKAA 149

Query:    98 NKKAEYELALEAYKKQLNDNGA--GV--SEDSWKXXXXXXXXXXXXXEINDEAEQE 149
               K +YE  + AY+ +   + A  GV  +E S K             E  +E E++
Sbjct:   150 KLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEDDEEDEEDEEEEEEEED 205

 Score = 106 (42.4 bits), Expect = 9.1e-06, P = 9.1e-06
 Identities = 22/74 (29%), Positives = 38/74 (51%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPD-NKSVAAMGKAGGQKWKSMSEAEKAPYVQKA 96
             D   P+  +S+Y  F++  R+  K+  PD + + +   K   ++WK+MS  EK  +   A
Sbjct:     5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64

Query:    97 LNKKAEYELALEAY 110
                KA YE  ++ Y
Sbjct:    65 KADKARYEREMKTY 78


>UNIPROTKB|E1BMK2 [details] [associations]
            symbol:E1BMK2 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
            PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0005737
            GO:GO:0005615 GO:GO:0003677 GO:GO:0030324 GO:GO:0045944
            GO:GO:0051384 GO:GO:0043005 GO:GO:0045860 GO:GO:0030295
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0045819 GO:GO:0001654 Pfam:PF09011 GO:GO:0045639
            GeneTree:ENSGT00560000076717 GO:GO:0010858 GO:GO:2000426
            EMBL:DAAA02042275 IPI:IPI00688378 Ensembl:ENSBTAT00000019791
            OMA:EXDIAAY Uniprot:E1BMK2
        Length = 215

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 37/116 (31%), Positives = 57/116 (49%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NAPKRP SA+F+F  ++R   K   P   S+  + K  G+ W + +  +K PY +KA 
Sbjct:    91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAVDDKQPYEKKAA 149

Query:    98 NKKAEYELALEAYKKQLNDNGA--GV--SEDSWKXXXXXXXXXXXXXEINDEAEQE 149
               K +YE  + AY+ +   + A  GV  +E S K             E  +E E++
Sbjct:   150 KLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEEDEED 205

 Score = 99 (39.9 bits), Expect = 0.00011, P = 0.00011
 Identities = 21/74 (28%), Positives = 37/74 (50%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPD-NKSVAAMGKAGGQKWKSMSEAEKAPYVQKA 96
             D   P+  +S+Y  F++  R+   +  PD + + +   K   ++WK+MS  EK  +   A
Sbjct:     5 DPKKPRGKMSSYAFFVQTCREEHTKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64

Query:    97 LNKKAEYELALEAY 110
                KA YE  ++ Y
Sbjct:    65 KVDKARYEREMKTY 78


>MGI|MGI:96157 [details] [associations]
            symbol:Hmgb2 "high mobility group box 2" species:10090 "Mus
            musculus" [GO:0000793 "condensed chromosome" evidence=ISO]
            [GO:0001938 "positive regulation of endothelial cell proliferation"
            evidence=ISO] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003684
            "damaged DNA binding" evidence=ISO] [GO:0003700 "sequence-specific
            DNA binding transcription factor activity" evidence=ISO]
            [GO:0005615 "extracellular space" evidence=ISO] [GO:0005634
            "nucleus" evidence=ISO;IC] [GO:0005694 "chromosome" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006288 "base-excision
            repair, DNA ligation" evidence=ISO] [GO:0006357 "regulation of
            transcription from RNA polymerase II promoter" evidence=ISO;IDA]
            [GO:0007283 "spermatogenesis" evidence=IMP] [GO:0007289 "spermatid
            nucleus differentiation" evidence=IMP] [GO:0007399 "nervous system
            development" evidence=ISO] [GO:0008289 "lipid binding"
            evidence=ISO] [GO:0008301 "DNA binding, bending" evidence=ISO]
            [GO:0008584 "male gonad development" evidence=IMP] [GO:0019904
            "protein domain specific binding" evidence=IPI] [GO:0031493
            "nucleosomal histone binding" evidence=ISO] [GO:0032075 "positive
            regulation of nuclease activity" evidence=ISO] [GO:0042056
            "chemoattractant activity" evidence=ISO] [GO:0043066 "negative
            regulation of apoptotic process" evidence=IMP] [GO:0043234 "protein
            complex" evidence=ISO] [GO:0043388 "positive regulation of DNA
            binding" evidence=ISO;IDA] [GO:0044212 "transcription regulatory
            region DNA binding" evidence=ISO] [GO:0045648 "positive regulation
            of erythrocyte differentiation" evidence=ISO] [GO:0045654 "positive
            regulation of megakaryocyte differentiation" evidence=ISO]
            [GO:0045892 "negative regulation of transcription, DNA-dependent"
            evidence=ISO] [GO:0045893 "positive regulation of transcription,
            DNA-dependent" evidence=ISO] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=ISO;IMP]
            [GO:0048471 "perinuclear region of cytoplasm" evidence=ISO]
            [GO:0048545 "response to steroid hormone stimulus" evidence=IMP]
            [GO:0050786 "RAGE receptor binding" evidence=ISO] [GO:0050918
            "positive chemotaxis" evidence=ISO] [GO:0051054 "positive
            regulation of DNA metabolic process" evidence=ISO] [GO:0060326
            "cell chemotaxis" evidence=ISO] InterPro:IPR009071
            InterPro:IPR017967 PROSITE:PS00353 MGI:MGI:96157 Pfam:PF00505
            GO:GO:0005634 GO:GO:0048471 GO:GO:0045892 GO:GO:0043066
            GO:GO:0005615 GO:GO:0043234 GO:GO:0005730 GO:GO:0003684
            GO:GO:0001938 GO:GO:0045944 GO:GO:0003700 GO:GO:0071222
            GO:GO:0048545 GO:GO:0008584 eggNOG:COG5648 GO:GO:0008301
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0044212 GO:GO:0007289 GO:GO:0045648 GO:GO:0045654
            GO:GO:0060326 GO:GO:0000793 GO:GO:0042056 GO:GO:0043388
            Pfam:PF09011 GO:GO:0032075 HOGENOM:HOG000197861 KO:K11295
            GeneTree:ENSGT00560000076717 HOVERGEN:HBG009000 GO:GO:0006288
            CTD:3148 OMA:KIKNDHP OrthoDB:EOG4TTGK2 EMBL:X67668 EMBL:Z46757
            EMBL:AF267733 EMBL:AK003773 EMBL:AK008443 EMBL:AK012568
            EMBL:AK135296 EMBL:AK135297 EMBL:AK146212 EMBL:BC002050
            EMBL:BC046759 EMBL:BC083108 IPI:IPI00462291 PIR:S26062 PIR:S54774
            RefSeq:NP_032278.1 UniGene:Mm.279998 UniGene:Mm.470487
            UniGene:Mm.490424 ProteinModelPortal:P30681 SMR:P30681 DIP:DIP-899N
            MINT:MINT-4097539 STRING:P30681 PhosphoSite:P30681 PaxDb:P30681
            PRIDE:P30681 Ensembl:ENSMUST00000067925 GeneID:97165 KEGG:mmu:97165
            UCSC:uc009lsx.2 InParanoid:P30681 NextBio:352589 Bgee:P30681
            CleanEx:MM_HMGB2 Genevestigator:P30681
            GermOnline:ENSMUSG00000054717 Uniprot:P30681
        Length = 210

 Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
 Identities = 38/116 (32%), Positives = 50/116 (43%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NAPKRP SA+F+F  + R   K   P   S+    K  G+ W   S  +K PY QKA 
Sbjct:    91 DPNAPKRPPSAFFLFCSENRPKIKIEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAA 149

Query:    98 NKKAEYELALEAY----KKQLNDNGAGVSEDSWKXXXXXXXXXXXXXEINDEAEQE 149
               K +YE  + AY    K +    G G    S K             E  ++ E+E
Sbjct:   150 KLKEKYEKDIAAYRAKGKSEAGKKGPGRPTGSKKKNEPEDEEEEEEEEEEEDDEEE 205

 Score = 116 (45.9 bits), Expect = 5.9e-07, P = 5.9e-07
 Identities = 26/88 (29%), Positives = 45/88 (51%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNK-SVAAMGKAGGQKWKSMSEAEKAPYVQKA 96
             D N P+  +S+Y  F++  R+  K+  PD+  + A   K   ++WK+MS  EK+ +   A
Sbjct:     5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLA 64

Query:    97 LNKKAEYELALEAYKKQLNDNGAGVSED 124
              + KA Y+  ++ Y     D   G  +D
Sbjct:    65 KSDKARYDREMKNYVPPKGDK-KGKKKD 91


>UNIPROTKB|D4A9T3 [details] [associations]
            symbol:D4A9T3 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
            InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
            GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 Pfam:PF09011 OrthoDB:EOG4KWJV1
            GeneTree:ENSGT00560000076717 IPI:IPI00564375
            Ensembl:ENSRNOT00000044787 Uniprot:D4A9T3
        Length = 184

 Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
 Identities = 28/74 (37%), Positives = 42/74 (56%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NAPKRP SA+F+F  ++R   K   P   S+  + K  G+ W + +  +K PY +KA 
Sbjct:    91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAA 149

Query:    98 NKKAEYELALEAYK 111
               K +YE  + AY+
Sbjct:   150 KLKEKYEKDIAAYR 163

 Score = 106 (42.4 bits), Expect = 5.2e-06, P = 5.2e-06
 Identities = 22/74 (29%), Positives = 38/74 (51%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPD-NKSVAAMGKAGGQKWKSMSEAEKAPYVQKA 96
             D   P+  +S+Y  F++  R+  K+  PD + + +   K   ++WK+MS  EK  +   A
Sbjct:     5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64

Query:    97 LNKKAEYELALEAY 110
                KA YE  ++ Y
Sbjct:    65 KADKARYEREMKTY 78


>UNIPROTKB|E9PES6 [details] [associations]
            symbol:HMGB3 "High mobility group protein B3" species:9606
            "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
            PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            Pfam:PF09011 EMBL:AF003626 HGNC:HGNC:5004 IPI:IPI00411540
            ProteinModelPortal:E9PES6 SMR:E9PES6 Ensembl:ENST00000430118
            ArrayExpress:E9PES6 Bgee:E9PES6 Uniprot:E9PES6
        Length = 153

 Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 26/66 (39%), Positives = 40/66 (60%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NAPKRP S +F+F  +FR   K + P   S+  + K  G+ W +++++EK PY+ KA 
Sbjct:    89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYITKAA 147

Query:    98 NKKAEY 103
               K +Y
Sbjct:   148 KLKEKY 153

 Score = 98 (39.6 bits), Expect = 7.3e-05, P = 7.3e-05
 Identities = 22/74 (29%), Positives = 38/74 (51%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNK-SVAAMGKAGGQKWKSMSEAEKAPYVQKA 96
             D   PK  +SAY  F++  R+  K+  P+   + A   K   ++WK+MS  EK+ + + A
Sbjct:     5 DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMA 64

Query:    97 LNKKAEYELALEAY 110
                K  Y+  ++ Y
Sbjct:    65 KADKVRYDREMKDY 78


>SGD|S000006256 [details] [associations]
            symbol:NHP6A "High-mobility group (HMG) protein, binds to and
            remodels nucleosomes" species:4932 "Saccharomyces cerevisiae"
            [GO:0032301 "MutSalpha complex" evidence=IDA] [GO:0006974 "response
            to DNA damage stimulus" evidence=IEA] [GO:0070898 "RNA polymerase
            III transcriptional preinitiation complex assembly"
            evidence=IGI;IDA] [GO:0006338 "chromatin remodeling" evidence=IGI]
            [GO:0034724 "DNA replication-independent nucleosome organization"
            evidence=IDA] [GO:0051123 "RNA polymerase II transcriptional
            preinitiation complex assembly" evidence=IDA] [GO:0005634 "nucleus"
            evidence=IEA;IDA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005694
            "chromosome" evidence=IEA] [GO:0008301 "DNA binding, bending"
            evidence=IDA] [GO:0031491 "nucleosome binding" evidence=IDA]
            [GO:0043565 "sequence-specific DNA binding" evidence=IDA]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0006298 "mismatch
            repair" evidence=IC] InterPro:IPR009071 SGD:S000006256 Pfam:PF00505
            GO:GO:0005634 GO:GO:0005694 GO:GO:0006355 GO:GO:0043565
            GO:GO:0006338 eggNOG:COG5648 GO:GO:0008301 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006298
            EMBL:Z71255 EMBL:BK006949 GO:GO:0031491 EMBL:Z49219
            GeneTree:ENSGT00560000076898 HOGENOM:HOG000197861 GO:GO:0051123
            EMBL:M95912 EMBL:X15317 EMBL:AY693230 PIR:A35072 RefSeq:NP_015377.1
            PDB:1CG7 PDB:1J5N PDB:1LWM PDBsum:1CG7 PDBsum:1J5N PDBsum:1LWM
            DisProt:DP00432 ProteinModelPortal:P11632 SMR:P11632 IntAct:P11632
            MINT:MINT-2785986 STRING:P11632 PaxDb:P11632 PeptideAtlas:P11632
            EnsemblFungi:YPR052C GeneID:856165 KEGG:sce:YPR052C CYGD:YPR052c
            OMA:FFANDNR OrthoDB:EOG4S7P0P EvolutionaryTrace:P11632
            NextBio:981313 Genevestigator:P11632 GermOnline:YPR052C
            GO:GO:0034724 GO:GO:0070898 Uniprot:P11632
        Length = 93

 Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 32/77 (41%), Positives = 40/77 (51%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NAPKR LSAY  F  + R   +   PD  +   +GK  G+KWK+++  EK PY  KA 
Sbjct:    17 DPNAPKRALSAYMFFANENRDIVRSENPDI-TFGQVGKKLGEKWKALTPEEKQPYEAKAQ 75

Query:    98 NKKAEYELALEAYKKQL 114
               K  YE   E Y   L
Sbjct:    76 ADKKRYESEKELYNATL 92


>TAIR|locus:2136103 [details] [associations]
            symbol:3xHMG-box1 "3xHigh Mobility Group-box1"
            species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
            evidence=ISM] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=ISS] InterPro:IPR009071
            Pfam:PF00505 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
            EMBL:AL161531 GO:GO:0003677 GO:GO:0003700 eggNOG:COG5648
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            EMBL:AF080120 EMBL:AL049876 HSSP:P07155 EMBL:AY133687 EMBL:AJ630485
            EMBL:AY568657 IPI:IPI00533286 PIR:T01926 PIR:T08187
            RefSeq:NP_192846.1 UniGene:At.33587 ProteinModelPortal:Q9T012
            SMR:Q9T012 EnsemblPlants:AT4G11080.1 GeneID:826709
            KEGG:ath:AT4G11080 TAIR:At4g11080 HOGENOM:HOG000238964
            InParanoid:Q9T012 KO:K09273 OMA:CKDQWNE PhylomeDB:Q9T012
            ProtClustDB:CLSN2686000 Genevestigator:Q9T012 Uniprot:Q9T012
        Length = 446

 Score = 148 (57.2 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 31/75 (41%), Positives = 45/75 (60%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D   PK+P+SAY I+  + R + K    +NKSV  + K  G++WK++SE +KAPY Q A 
Sbjct:   242 DPLKPKQPISAYLIYANERRAALKG---ENKSVIEVAKMAGEEWKNLSEEKKAPYDQMAK 298

Query:    98 NKKAEYELALEAYKK 112
               K  Y   +E YK+
Sbjct:   299 KNKEIYLQEMEGYKR 313

 Score = 124 (48.7 bits), Expect = 4.4e-07, P = 4.4e-07
 Identities = 30/77 (38%), Positives = 39/77 (50%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFP--DNKSVAAMGKAGGQKWKSMSEAEKAPYVQK 95
             D N PK+P S+YF+F +D RKS  E  P  +N +V A       KW  + E EK  Y  K
Sbjct:   368 DPNKPKKPTSSYFLFCKDARKSVLEEHPGINNSTVTAHISL---KWMELGEEEKQVYNSK 424

Query:    96 ALNKKAEYELALEAYKK 112
             A      Y+  +E Y K
Sbjct:   425 AAELMEAYKKEVEEYNK 441


>UNIPROTKB|Q32L34 [details] [associations]
            symbol:HMGB4 "High mobility group protein B4" species:9913
            "Bos taurus" [GO:0005694 "chromosome" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
            GO:GO:0005694 GO:GO:0003677 eggNOG:COG5648 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
            GeneTree:ENSGT00560000076898 HOGENOM:HOG000197861
            HOVERGEN:HBG009000 EMBL:BC109790 IPI:IPI00760422
            RefSeq:NP_001035652.1 UniGene:Bt.54197 ProteinModelPortal:Q32L34
            Ensembl:ENSBTAT00000000438 GeneID:539195 KEGG:bta:539195 CTD:127540
            InParanoid:Q32L34 KO:K11297 OMA:RYQEEMM OrthoDB:EOG4255TS
            NextBio:20877839 Uniprot:Q32L34
        Length = 194

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 27/78 (34%), Positives = 44/78 (56%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D +AP+RP S++ +F +D     K   P + SV  + KA G+ W + ++ +K PY Q+A 
Sbjct:    89 DPHAPRRPPSSFLLFCQDHYAQLKSENP-SWSVVQVAKASGKMWSAKTDVDKQPYEQRAA 147

Query:    98 NKKAEYELALEAYKKQLN 115
               +A+Y   L  Y+ Q N
Sbjct:   148 LLRAKYREELSVYRNQFN 165

 Score = 100 (40.3 bits), Expect = 3.2e-05, P = 3.2e-05
 Identities = 24/74 (32%), Positives = 37/74 (50%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNK-SVAAMGKAGGQKWKSMSEAEKAPYVQKA 96
             D   PK  +S+Y  F+ ++R  FKE  P+         +   +KW+S+S+ EKA Y   A
Sbjct:     5 DQLKPKANVSSYIHFLLNYRNKFKEQQPNTYLGFKEFSRKCSEKWRSISKHEKAKYEALA 64

Query:    97 LNKKAEYELALEAY 110
                KA Y+  +  Y
Sbjct:    65 KLDKARYQEEMMNY 78


>UNIPROTKB|Q8WW32 [details] [associations]
            symbol:HMGB4 "High mobility group protein B4" species:9606
            "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
            InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
            GO:GO:0005694 GO:GO:0003677 EMBL:CH471059 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
            EMBL:AL121980 HOGENOM:HOG000197861 HOVERGEN:HBG009000 CTD:127540
            KO:K11297 OMA:RYQEEMM EMBL:DQ207367 EMBL:AK311985 EMBL:BC021180
            IPI:IPI00815726 RefSeq:NP_660206.2 UniGene:Hs.568628
            UniGene:Hs.667683 HSSP:P17741 ProteinModelPortal:Q8WW32 SMR:Q8WW32
            PhosphoSite:Q8WW32 DMDM:74730920 PRIDE:Q8WW32 DNASU:127540
            Ensembl:ENST00000519684 Ensembl:ENST00000522796 GeneID:127540
            KEGG:hsa:127540 GeneCards:GC01P034326 HGNC:HGNC:24954 HPA:HPA035699
            neXtProt:NX_Q8WW32 InParanoid:Q8WW32 PhylomeDB:Q8WW32 NextBio:82109
            Bgee:Q8WW32 CleanEx:HS_HMGB4 Genevestigator:Q8WW32 Uniprot:Q8WW32
        Length = 186

 Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 29/78 (37%), Positives = 43/78 (55%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D   P+RP S++ +F +D     K   P N SV  + KA G+ W + ++ EK PY Q+  
Sbjct:    89 DPQEPRRPPSSFLLFCQDHYAQLKRENP-NWSVVQVAKATGKMWSTATDLEKHPYEQRVA 147

Query:    98 NKKAEYELALEAYKKQLN 115
               +A+Y   LE Y+KQ N
Sbjct:   148 LLRAKYFEELELYRKQCN 165

 Score = 97 (39.2 bits), Expect = 0.00031, P = 0.00031
 Identities = 23/70 (32%), Positives = 36/70 (51%)

Query:    42 PKRPLSAYFIFMEDFRKSFKESFPDNK-SVAAMGKAGGQKWKSMSEAEKAPYVQKALNKK 100
             PK  +S+Y  F+ ++R  FKE  P+         +   +KW+S+S+ EKA Y   A   K
Sbjct:     9 PKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKLDK 68

Query:   101 AEYELALEAY 110
             A Y+  +  Y
Sbjct:    69 ARYQEEMMNY 78


>GENEDB_PFALCIPARUM|PFL0145c [details] [associations]
            symbol:PFL0145c "high mobility group protein"
            species:5833 "Plasmodium falciparum" [GO:0005634 "nucleus"
            evidence=ISS] [GO:0003682 "chromatin binding" evidence=ISS]
            [GO:0000785 "chromatin" evidence=ISS] InterPro:IPR009071
            Pfam:PF00505 GO:GO:0005634 GO:GO:0000785 GO:GO:0003682
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            EMBL:AE014188 HOGENOM:HOG000197861 HSSP:P11632 OMA:FFANDNR
            GenomeReviews:AE014188_GR RefSeq:XP_001350438.1
            ProteinModelPortal:Q8I616 EnsemblProtists:PFL0145c:mRNA
            GeneID:811082 KEGG:pfa:PFL0145c EuPathDB:PlasmoDB:PF3D7_1202900
            ProtClustDB:PTZ00199 Uniprot:Q8I616
        Length = 97

 Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 29/68 (42%), Positives = 39/68 (57%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPD-NKSVAAMGKAGGQKWKSMSEAEKAPYVQKA 96
             D +APKR LSAY  F ++ R       P+ +K VA +GK  G+ W  + E EKAP+ +KA
Sbjct:    17 DPHAPKRSLSAYMFFAKEKRAEIISKQPELSKDVATVGKMIGEAWNKLGEKEKAPFEKKA 76

Query:    97 LNKKAEYE 104
                K  YE
Sbjct:    77 QEDKLRYE 84


>UNIPROTKB|Q8I616 [details] [associations]
            symbol:HMGB1 "High mobility group protein" species:36329
            "Plasmodium falciparum 3D7" [GO:0000785 "chromatin" evidence=ISS]
            [GO:0003682 "chromatin binding" evidence=ISS] [GO:0005634 "nucleus"
            evidence=ISS] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
            GO:GO:0000785 GO:GO:0003682 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AE014188 HOGENOM:HOG000197861
            HSSP:P11632 OMA:FFANDNR GenomeReviews:AE014188_GR
            RefSeq:XP_001350438.1 ProteinModelPortal:Q8I616
            EnsemblProtists:PFL0145c:mRNA GeneID:811082 KEGG:pfa:PFL0145c
            EuPathDB:PlasmoDB:PF3D7_1202900 ProtClustDB:PTZ00199 Uniprot:Q8I616
        Length = 97

 Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 29/68 (42%), Positives = 39/68 (57%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPD-NKSVAAMGKAGGQKWKSMSEAEKAPYVQKA 96
             D +APKR LSAY  F ++ R       P+ +K VA +GK  G+ W  + E EKAP+ +KA
Sbjct:    17 DPHAPKRSLSAYMFFAKEKRAEIISKQPELSKDVATVGKMIGEAWNKLGEKEKAPFEKKA 76

Query:    97 LNKKAEYE 104
                K  YE
Sbjct:    77 QEDKLRYE 84


>WB|WBGene00001973 [details] [associations]
            symbol:hmg-3 species:6239 "Caenorhabditis elegans"
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0000003 "reproduction" evidence=IMP] [GO:0040010
            "positive regulation of growth rate" evidence=IMP] [GO:0009792
            "embryo development ending in birth or egg hatching" evidence=IMP]
            [GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
            development" evidence=IMP] [GO:0051301 "cell division"
            evidence=IMP] [GO:0000910 "cytokinesis" evidence=IMP] [GO:0010171
            "body morphogenesis" evidence=IMP] [GO:0040018 "positive regulation
            of multicellular organism growth" evidence=IMP] [GO:0007413 "axonal
            fasciculation" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
            [GO:0048477 "oogenesis" evidence=IMP] InterPro:IPR009071
            InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
            GO:GO:0005634 GO:GO:0009792 GO:GO:0040007 GO:GO:0040010
            GO:GO:0005694 GO:GO:0002119 GO:GO:0006355 Gene3D:2.30.29.30
            InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
            GO:GO:0010171 GO:GO:0040011 GO:GO:0040018 GO:GO:0048477
            GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0000910 GO:GO:0007413
            GeneTree:ENSGT00700000104547 InterPro:IPR013719 Pfam:PF08512
            EMBL:FO080198 eggNOG:COG5165 KO:K09272 InterPro:IPR024954
            HOGENOM:HOG000180790 PIR:T34025 RefSeq:NP_491688.1
            ProteinModelPortal:O01683 SMR:O01683 IntAct:O01683 STRING:O01683
            PaxDb:O01683 PRIDE:O01683 EnsemblMetazoa:C32F10.5 GeneID:172250
            KEGG:cel:CELE_C32F10.5 UCSC:C32F10.5 CTD:172250 WormBase:C32F10.5
            InParanoid:O01683 OMA:KRATTAY NextBio:874675 Uniprot:O01683
        Length = 689

 Score = 148 (57.2 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 36/88 (40%), Positives = 46/88 (52%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D N PKR  +AY I+    R S KE   D  ++  + K  G KWKSMS  +K  +  KA 
Sbjct:   557 DPNEPKRATTAYIIWFNANRNSMKE---DGDTLGDVAKKAGAKWKSMSADDKKEWNDKAA 613

Query:    98 NKKAEYELALEAYKKQLNDNGAGVSEDS 125
               KA YE  ++ YKK    NG GV + S
Sbjct:   614 QDKARYEAEMKEYKK----NGGGVEKAS 637


>UNIPROTKB|F1Q2J2 [details] [associations]
            symbol:SSRP1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677
            "DNA binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR000969
            PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531 GO:GO:0005634
            Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GeneTree:ENSGT00700000104547 InterPro:IPR013719 Pfam:PF08512
            InterPro:IPR024954 OMA:PVEVKKG EMBL:AAEX03011448
            Ensembl:ENSCAFT00000012707 Uniprot:F1Q2J2
        Length = 710

 Score = 146 (56.5 bits), Expect = 3.8e-09, P = 3.8e-09
 Identities = 32/90 (35%), Positives = 51/90 (56%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NAPKRP+SAY +++   R+  K   P   S+  + K  G+ WK MS+ +K  + +KA 
Sbjct:   542 DPNAPKRPMSAYMLWLNASREKIKADHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKAE 600

Query:    98 NKKAEYELALEAYKKQLNDNGAGVSEDSWK 127
             + + EYE A++ Y     + G G S  S++
Sbjct:   601 DARREYEKAMKEY-----EGGRGESSKSYR 625


>TAIR|locus:2128504 [details] [associations]
            symbol:3xHMG-box2 "3xHigh Mobility Group-box2"
            species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
            evidence=ISM] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=ISS] [GO:0003677 "DNA
            binding" evidence=IDA] [GO:0000226 "microtubule cytoskeleton
            organization" evidence=RCA] [GO:0000911 "cytokinesis by cell plate
            formation" evidence=RCA] [GO:0006084 "acetyl-CoA metabolic process"
            evidence=RCA] [GO:0008283 "cell proliferation" evidence=RCA]
            [GO:0010583 "response to cyclopentenone" evidence=RCA] [GO:0016572
            "histone phosphorylation" evidence=RCA] [GO:0042127 "regulation of
            cell proliferation" evidence=RCA] InterPro:IPR009071 Pfam:PF00505
            GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677
            GO:GO:0003700 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 EMBL:AL161560 EMBL:AL035394 HSSP:P07155
            HOGENOM:HOG000238964 KO:K09273 ProtClustDB:CLSN2686000
            EMBL:AY074353 EMBL:AY096398 EMBL:AY125491 IPI:IPI00533790
            PIR:T05612 RefSeq:NP_194111.1 UniGene:At.2572 UniGene:At.71059
            ProteinModelPortal:Q9SUP7 SMR:Q9SUP7 STRING:Q9SUP7 PaxDb:Q9SUP7
            PRIDE:Q9SUP7 EnsemblPlants:AT4G23800.1 GeneID:828480
            KEGG:ath:AT4G23800 TAIR:At4g23800 eggNOG:NOG327891
            InParanoid:Q9SUP7 OMA:FCNERRA PhylomeDB:Q9SUP7
            Genevestigator:Q9SUP7 Uniprot:Q9SUP7
        Length = 456

 Score = 143 (55.4 bits), Expect = 4.1e-09, P = 4.1e-09
 Identities = 28/75 (37%), Positives = 46/75 (61%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D   PK P+SA+ ++  + R + +E   +NKSV  + K  G++WK++S+ +KAPY + A 
Sbjct:   251 DPLKPKHPVSAFLVYANERRAALRE---ENKSVVEVAKITGEEWKNLSDKKKAPYEKVAK 307

Query:    98 NKKAEYELALEAYKK 112
               K  Y  A+E YK+
Sbjct:   308 KNKETYLQAMEEYKR 322

 Score = 136 (52.9 bits), Expect = 2.3e-08, P = 2.3e-08
 Identities = 32/78 (41%), Positives = 43/78 (55%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFP--DNKSVAAMGKAGGQKWKSMSEAEKAPYVQK 95
             D N PK+P S+YF+F +D RK   E  P  +N +V A+      KWK +SE EK  Y  K
Sbjct:   375 DPNKPKKPASSYFLFSKDERKKLTEERPGTNNATVTALISL---KWKELSEEEKQVYNGK 431

Query:    96 ALNKKAEYELALEAYKKQ 113
             A      Y+  +EAY K+
Sbjct:   432 AAKLMEAYKKEVEAYNKK 449


>RGD|1587112 [details] [associations]
            symbol:Hmg1l1 "high-mobility group (nonhistone chromosomal)
            protein 1-like 1" species:10116 "Rattus norvegicus" [GO:0003674
            "molecular_function" evidence=ND] [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR009071
            InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:1587112
            GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011 OrthoDB:EOG4KWJV1
            GeneTree:ENSGT00560000076717 IPI:IPI00564933 RefSeq:XP_003748829.1
            RefSeq:XP_003753270.1 Ensembl:ENSRNOT00000047765 GeneID:100909581
            KEGG:rno:100909581 OMA:KEYHSAR Uniprot:D3ZL49
        Length = 215

 Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
 Identities = 35/114 (30%), Positives = 55/114 (48%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NAPKRP SA+F+F  ++R   K   P   S+  + K  G+ W + +  +K PY + A 
Sbjct:    91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWTNTAADDKQPYGKMAA 149

Query:    98 NKKAEYELALEAYKKQLNDNGA--GVSEDSWKXXXXXXXXXXXXXEINDEAEQE 149
               K +YE  + AY+ +   + A  GV +   K             E ++E E+E
Sbjct:   150 KLKEKYEKDIAAYRAKGKPDAAKKGVVKAE-KSKKKKEEEDDEEDEEDEEEEEE 202

 Score = 101 (40.6 bits), Expect = 3.4e-05, P = 3.4e-05
 Identities = 22/74 (29%), Positives = 37/74 (50%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPD-NKSVAAMGKAGGQKWKSMSEAEKAPYVQKA 96
             D   P+  +S+Y  F++  R+  K+  PD + + +   K   ++WK+MS  EK      A
Sbjct:     5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKCEDMA 64

Query:    97 LNKKAEYELALEAY 110
                KA YE  ++ Y
Sbjct:    65 KADKARYEREMKTY 78


>FB|FBgn0010228 [details] [associations]
            symbol:HmgZ "HMG protein Z" species:7227 "Drosophila
            melanogaster" [GO:0003677 "DNA binding" evidence=NAS] [GO:0005634
            "nucleus" evidence=NAS] InterPro:IPR009071 Pfam:PF00505
            EMBL:AE013599 GO:GO:0005634 GO:GO:0005694 GO:GO:0003677
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            eggNOG:NOG320947 GeneTree:ENSGT00700000104547 EMBL:X71139
            EMBL:AY113439 PIR:S41765 RefSeq:NP_726106.1 RefSeq:NP_726107.1
            UniGene:Dm.20604 ProteinModelPortal:Q06943 SMR:Q06943 PaxDb:Q06943
            PRIDE:Q06943 EnsemblMetazoa:FBtr0071673 EnsemblMetazoa:FBtr0071674
            GeneID:37480 KEGG:dme:Dmel_CG17921 CTD:37480 FlyBase:FBgn0010228
            InParanoid:Q06943 OMA:EANGGTD OrthoDB:EOG4W0VWS PhylomeDB:Q06943
            ChiTaRS:HmgZ GenomeRNAi:37480 NextBio:803858 Bgee:Q06943
            GermOnline:CG17921 Uniprot:Q06943
        Length = 111

 Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
 Identities = 29/79 (36%), Positives = 47/79 (59%)

Query:    42 PKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKA 101
             PKRPLSAY +++ + R+  K+  P +K V  + K GG+ W+ + +  K  + QKA+  K 
Sbjct:     6 PKRPLSAYMLWLNETREQIKKDNPGSK-VTDIAKRGGELWRGLKD--KTEWEQKAIKMKE 62

Query:   102 EYELALEAYKKQLN-DNGA 119
             EY  A++ Y+     D+GA
Sbjct:    63 EYNKAVKEYEANGGTDSGA 81


>SGD|S000002157 [details] [associations]
            symbol:NHP6B "High-mobility group (HMG) protein, binds to and
            remodels nucleosomes" species:4932 "Saccharomyces cerevisiae"
            [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005694 "chromosome"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006281
            "DNA repair" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0006974 "response
            to DNA damage stimulus" evidence=IEA] [GO:0006338 "chromatin
            remodeling" evidence=IGI] [GO:0070898 "RNA polymerase III
            transcriptional preinitiation complex assembly" evidence=IGI;IDA]
            [GO:0008301 "DNA binding, bending" evidence=IDA] [GO:0006366
            "transcription from RNA polymerase II promoter" evidence=IGI]
            [GO:0043565 "sequence-specific DNA binding" evidence=IDA]
            [GO:0031491 "nucleosome binding" evidence=ISS] InterPro:IPR009071
            SGD:S000002157 Pfam:PF00505 GO:GO:0005634 GO:GO:0005694
            GO:GO:0006355 GO:GO:0043565 GO:GO:0006281 EMBL:BK006936
            GO:GO:0006338 eggNOG:COG5648 GO:GO:0008301 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006366
            EMBL:X78993 GO:GO:0031491 GeneTree:ENSGT00560000076898
            HOGENOM:HOG000197861 OMA:LANPNNK OrthoDB:EOG4S7P0P GO:GO:0070898
            EMBL:X15318 EMBL:Z35957 EMBL:Z35959 EMBL:AY558566 EMBL:EF123125
            PIR:S78076 RefSeq:NP_009647.2 ProteinModelPortal:P11633 SMR:P11633
            DIP:DIP-6748N IntAct:P11633 MINT:MINT-615533 STRING:P11633
            PaxDb:P11633 PeptideAtlas:P11633 EnsemblFungi:YBR089C-A
            GeneID:852386 KEGG:sce:YBR089C-A CYGD:YBR089c-a NextBio:971195
            Genevestigator:P11633 GermOnline:YBR089C-A Uniprot:P11633
        Length = 99

 Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
 Identities = 29/73 (39%), Positives = 39/73 (53%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NAPKR LSAY  F  + R   +   PD  +   +G+  G++WK+++  EK PY  KA 
Sbjct:    23 DPNAPKRGLSAYMFFANENRDIVRSENPD-VTFGQVGRILGERWKALTAEEKQPYESKAQ 81

Query:    98 NKKAEYELALEAY 110
               K  YE   E Y
Sbjct:    82 ADKKRYESEKELY 94


>UNIPROTKB|B6ZLK1 [details] [associations]
            symbol:SSRP1 "Structure-specific recognition protein 1"
            species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] InterPro:IPR009071 InterPro:IPR000969 PRINTS:PR00887
            Pfam:PF00505 Pfam:PF03531 GO:GO:0005634 GO:GO:0005737
            Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GeneTree:ENSGT00700000104547 InterPro:IPR013719 Pfam:PF08512
            InterPro:IPR024954 OMA:PVEVKKG IPI:IPI00582237 UniGene:Gga.2985
            HOVERGEN:HBG002932 EMBL:AADN02050757 EMBL:AADN02050758
            EMBL:AB465209 STRING:B6ZLK1 Ensembl:ENSGALT00000012159
            Ensembl:ENSGALT00000038738 Uniprot:B6ZLK1
        Length = 706

 Score = 144 (55.7 bits), Expect = 6.2e-09, P = 6.2e-09
 Identities = 38/119 (31%), Positives = 58/119 (48%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NAPKRP+SAY +++   R+  K   P   S+  + K  G+ WK+MS+ +K  + +KA 
Sbjct:   541 DPNAPKRPMSAYMLWLNANREKIKSDHP-GISITDLSKKAGELWKAMSKEKKEEWDRKAE 599

Query:    98 NKKAEYELALEAYKKQLNDNGAGVSEDSWKXXXXXXXXXXXXXEINDEAEQEFSSQVSS 156
             + K +YE A++ Y    N + +   E S K             E    A +  SS  SS
Sbjct:   600 DAKRDYEKAMKEYSVG-NKSESSKMERSKKKKKKQEKQMKGKGEKKGAASKSSSSTKSS 657


>UNIPROTKB|Q04678 [details] [associations]
            symbol:SSRP1 "FACT complex subunit SSRP1" species:9031
            "Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
            "DNA replication" evidence=IEA] [GO:0006281 "DNA repair"
            evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
            [GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR009071
            InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
            GO:GO:0005694 GO:GO:0005730 GO:GO:0006355 Gene3D:2.30.29.30
            InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
            GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 InterPro:IPR013719 Pfam:PF08512 eggNOG:COG5165
            KO:K09272 InterPro:IPR024954 HOGENOM:HOG000180790 EMBL:AJ719641
            EMBL:L08815 EMBL:D14315 IPI:IPI00582237 PIR:S78050
            RefSeq:NP_001005796.1 UniGene:Gga.2985 ProteinModelPortal:Q04678
            STRING:Q04678 PRIDE:Q04678 GeneID:396509 KEGG:gga:396509 CTD:6749
            HOVERGEN:HBG002932 InParanoid:Q04678 OrthoDB:EOG41VK2K
            NextBio:20816548 Uniprot:Q04678
        Length = 706

 Score = 144 (55.7 bits), Expect = 6.2e-09, P = 6.2e-09
 Identities = 38/119 (31%), Positives = 58/119 (48%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NAPKRP+SAY +++   R+  K   P   S+  + K  G+ WK+MS+ +K  + +KA 
Sbjct:   541 DPNAPKRPMSAYMLWLNANREKIKSDHP-GISITDLSKKAGELWKAMSKEKKEEWDRKAE 599

Query:    98 NKKAEYELALEAYKKQLNDNGAGVSEDSWKXXXXXXXXXXXXXEINDEAEQEFSSQVSS 156
             + K +YE A++ Y    N + +   E S K             E    A +  SS  SS
Sbjct:   600 DAKRDYEKAMKEYSVG-NKSESSKMERSKKKKKKQEKQMKGKGEKKGAASKSSSSTKSS 657


>MGI|MGI:107912 [details] [associations]
            symbol:Ssrp1 "structure specific recognition protein 1"
            species:10090 "Mus musculus" [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0003682 "chromatin binding" evidence=IDA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005694 "chromosome"
            evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
            [GO:0006281 "DNA repair" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0006974 "response
            to DNA damage stimulus" evidence=IEA] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR009071
            InterPro:IPR000969 PRINTS:PR00887 MGI:MGI:107912 Pfam:PF00505
            Pfam:PF03531 GO:GO:0005737 GO:GO:0005694 GO:GO:0005730
            GO:GO:0006355 Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677
            GO:GO:0006260 GO:GO:0006281 GO:GO:0006351 GO:GO:0003682
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GeneTree:ENSGT00700000104547 InterPro:IPR013719 Pfam:PF08512
            eggNOG:COG5165 KO:K09272 InterPro:IPR024954 HOGENOM:HOG000180790
            OMA:PVEVKKG CTD:6749 HOVERGEN:HBG002932 OrthoDB:EOG41VK2K
            EMBL:S50213 EMBL:AK146446 EMBL:AK146585 EMBL:AK146607 EMBL:AK151584
            EMBL:AK158552 EMBL:BC042502 EMBL:BC096682 IPI:IPI00407571
            IPI:IPI00652593 PIR:A41265 RefSeq:NP_001129553.1 RefSeq:NP_892035.2
            UniGene:Mm.219793 ProteinModelPortal:Q08943 SMR:Q08943
            IntAct:Q08943 STRING:Q08943 PhosphoSite:Q08943 PaxDb:Q08943
            PRIDE:Q08943 Ensembl:ENSMUST00000077798 Ensembl:ENSMUST00000168266
            GeneID:20833 KEGG:mmu:20833 NextBio:299579 Bgee:Q08943
            CleanEx:MM_SSRP1 Genevestigator:Q08943
            GermOnline:ENSMUSG00000027067 Uniprot:Q08943
        Length = 708

 Score = 144 (55.7 bits), Expect = 6.2e-09, P = 6.2e-09
 Identities = 29/80 (36%), Positives = 47/80 (58%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NAPKRP+SAY +++   R+  K   P   S+  + K  G+ WK MS+ +K  + +KA 
Sbjct:   543 DPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKAE 601

Query:    98 NKKAEYELALEAYKKQLNDN 117
             + + EYE A++ Y+    D+
Sbjct:   602 DARREYEKAMKEYEGGRGDS 621


>UNIPROTKB|F6QYV9 [details] [associations]
            symbol:SSRP1 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
            InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
            GO:GO:0005634 GO:GO:0005737 Gene3D:2.30.29.30 InterPro:IPR011993
            GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GeneTree:ENSGT00700000104547 InterPro:IPR013719
            Pfam:PF08512 InterPro:IPR024954 OMA:PVEVKKG EMBL:DAAA02041723
            IPI:IPI00699243 UniGene:Bt.5242 Ensembl:ENSBTAT00000000486
            Uniprot:F6QYV9
        Length = 709

 Score = 144 (55.7 bits), Expect = 6.2e-09, P = 6.2e-09
 Identities = 29/74 (39%), Positives = 45/74 (60%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NAPKRP+SAY +++   R+  K   P   SV  + K  G+ WK MS+ +K  + +KA 
Sbjct:   543 DPNAPKRPMSAYMLWLNASREKIKSDHP-GISVTDLSKKAGEIWKGMSKEKKEEWDRKAE 601

Query:    98 NKKAEYELALEAYK 111
             + + EYE A++ Y+
Sbjct:   602 DARREYEKAMKEYE 615


>RGD|621143 [details] [associations]
            symbol:Ssrp1 "structure specific recognition protein 1"
            species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
            evidence=IEA;NAS] [GO:0003682 "chromatin binding" evidence=IEA;ISO]
            [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005694 "chromosome"
            evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA;ISO] [GO:0006260 "DNA replication"
            evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=IEA]
            InterPro:IPR009071 InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505
            Pfam:PF03531 RGD:621143 GO:GO:0005694 GO:GO:0005730 GO:GO:0006355
            Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260
            GO:GO:0006281 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00700000104547
            InterPro:IPR013719 Pfam:PF08512 eggNOG:COG5165 KO:K09272
            InterPro:IPR024954 HOGENOM:HOG000180790 CTD:6749 HOVERGEN:HBG002932
            EMBL:BC083588 EMBL:L08814 IPI:IPI00231263 PIR:S35637
            RefSeq:NP_112383.1 UniGene:Rn.35908 ProteinModelPortal:Q04931
            STRING:Q04931 PhosphoSite:Q04931 PRIDE:Q04931
            Ensembl:ENSRNOT00000012022 GeneID:81785 KEGG:rno:81785
            UCSC:RGD:621143 NextBio:615643 ArrayExpress:Q04931
            Genevestigator:Q04931 GermOnline:ENSRNOG00000008825 Uniprot:Q04931
        Length = 709

 Score = 144 (55.7 bits), Expect = 6.2e-09, P = 6.2e-09
 Identities = 29/80 (36%), Positives = 47/80 (58%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NAPKRP+SAY +++   R+  K   P   S+  + K  G+ WK MS+ +K  + +KA 
Sbjct:   543 DPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKAE 601

Query:    98 NKKAEYELALEAYKKQLNDN 117
             + + EYE A++ Y+    D+
Sbjct:   602 DARREYEKAMKEYEGGRGDS 621


>UNIPROTKB|Q04931 [details] [associations]
            symbol:Ssrp1 "FACT complex subunit SSRP1" species:10116
            "Rattus norvegicus" [GO:0003682 "chromatin binding" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR009071
            InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
            RGD:621143 GO:GO:0005694 GO:GO:0005730 GO:GO:0006355
            Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260
            GO:GO:0006281 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00700000104547
            InterPro:IPR013719 Pfam:PF08512 eggNOG:COG5165 KO:K09272
            InterPro:IPR024954 HOGENOM:HOG000180790 CTD:6749 HOVERGEN:HBG002932
            EMBL:BC083588 EMBL:L08814 IPI:IPI00231263 PIR:S35637
            RefSeq:NP_112383.1 UniGene:Rn.35908 ProteinModelPortal:Q04931
            STRING:Q04931 PhosphoSite:Q04931 PRIDE:Q04931
            Ensembl:ENSRNOT00000012022 GeneID:81785 KEGG:rno:81785
            UCSC:RGD:621143 NextBio:615643 ArrayExpress:Q04931
            Genevestigator:Q04931 GermOnline:ENSRNOG00000008825 Uniprot:Q04931
        Length = 709

 Score = 144 (55.7 bits), Expect = 6.2e-09, P = 6.2e-09
 Identities = 29/80 (36%), Positives = 47/80 (58%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NAPKRP+SAY +++   R+  K   P   S+  + K  G+ WK MS+ +K  + +KA 
Sbjct:   543 DPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKAE 601

Query:    98 NKKAEYELALEAYKKQLNDN 117
             + + EYE A++ Y+    D+
Sbjct:   602 DARREYEKAMKEYEGGRGDS 621


>UNIPROTKB|J9NYX4 [details] [associations]
            symbol:SSRP1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677
            "DNA binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR000969
            PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531 GO:GO:0005634
            GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GeneTree:ENSGT00700000104547 InterPro:IPR013719
            Pfam:PF08512 InterPro:IPR024954 EMBL:AAEX03011448
            Ensembl:ENSCAFT00000049552 Uniprot:J9NYX4
        Length = 551

 Score = 142 (55.0 bits), Expect = 7.1e-09, P = 7.1e-09
 Identities = 28/74 (37%), Positives = 45/74 (60%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NAPKRP+SAY +++   R+  K   P   S+  + K  G+ WK MS+ +K  + +KA 
Sbjct:   385 DPNAPKRPMSAYMLWLNASREKIKADHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKAE 443

Query:    98 NKKAEYELALEAYK 111
             + + EYE A++ Y+
Sbjct:   444 DARREYEKAMKEYE 457


>UNIPROTKB|G4MS97 [details] [associations]
            symbol:MGG_04489 "Non-histone chromosomal protein 6"
            species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
            "cellular_component" evidence=ND] InterPro:IPR009071 Pfam:PF00505
            GO:GO:0043565 GO:GO:0006338 GO:GO:0008301 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 EMBL:CM001231
            GO:GO:0031491 GO:GO:0051123 GO:GO:0032301 GO:GO:0034724
            GO:GO:0070898 RefSeq:XP_003710967.1 ProteinModelPortal:G4MS97
            SMR:G4MS97 EnsemblFungi:MGG_04489T0 GeneID:2678075
            KEGG:mgr:MGG_04489 Uniprot:G4MS97
        Length = 101

 Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
 Identities = 29/74 (39%), Positives = 42/74 (56%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D  APKR LSAY  F  + R + +E  P   +   +GK  G++WK++S+ ++APY  KA 
Sbjct:    20 DPMAPKRGLSAYMFFANEQRDNVREENP-GVTFGQVGKILGERWKALSDKQRAPYDAKAA 78

Query:    98 NKKAEYELALEAYK 111
               K  YE    AY+
Sbjct:    79 ADKKRYEDEKAAYQ 92


>UNIPROTKB|I3LLA8 [details] [associations]
            symbol:SSRP1 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
            InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
            GO:GO:0005634 GO:GO:0005737 Gene3D:2.30.29.30 InterPro:IPR011993
            GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GeneTree:ENSGT00700000104547 InterPro:IPR013719
            Pfam:PF08512 KO:K09272 InterPro:IPR024954 OMA:PVEVKKG CTD:6749
            EMBL:FP312857 RefSeq:XP_003353912.1 Ensembl:ENSSSCT00000023703
            GeneID:100624907 KEGG:ssc:100624907 Uniprot:I3LLA8
        Length = 709

 Score = 143 (55.4 bits), Expect = 8.0e-09, P = 8.0e-09
 Identities = 28/74 (37%), Positives = 45/74 (60%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NAPKRP+SAY +++   R+  K   P   S+  + K  G+ WK MS+ +K  + +KA 
Sbjct:   543 DPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKAE 601

Query:    98 NKKAEYELALEAYK 111
             + + EYE A++ Y+
Sbjct:   602 DARREYEKAMKEYE 615


>UNIPROTKB|J9P699 [details] [associations]
            symbol:HMGB1 "High mobility group protein B1" species:9615
            "Canis lupus familiaris" [GO:0005634 "nucleus" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
            InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
            GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 Pfam:PF09011 GeneTree:ENSGT00560000076717
            EMBL:AAEX03014229 EMBL:AAEX03014230 Ensembl:ENSCAFT00000046727
            Uniprot:J9P699
        Length = 196

 Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
 Identities = 26/67 (38%), Positives = 38/67 (56%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NAPKRP SA+F+F  ++R   K   P   S+  + K  G+ W + +  +K PY +KA 
Sbjct:    91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAA 149

Query:    98 NKKAEYE 104
               K +YE
Sbjct:   150 KLKEKYE 156

 Score = 106 (42.4 bits), Expect = 6.7e-06, P = 6.7e-06
 Identities = 22/74 (29%), Positives = 38/74 (51%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPD-NKSVAAMGKAGGQKWKSMSEAEKAPYVQKA 96
             D   P+  +S+Y  F++  R+  K+  PD + + +   K   ++WK+MS  EK  +   A
Sbjct:     5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64

Query:    97 LNKKAEYELALEAY 110
                KA YE  ++ Y
Sbjct:    65 KADKARYEREMKTY 78


>UNIPROTKB|Q5T7C4 [details] [associations]
            symbol:HMGB1 "High mobility group protein B1" species:9606
            "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
            PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            Pfam:PF09011 HOVERGEN:HBG009000 EMBL:AL353648 UniGene:Hs.434102
            UniGene:Hs.593339 UniGene:Hs.596078 UniGene:Hs.741195
            HGNC:HGNC:4983 ChiTaRS:HMGB1 EMBL:AL138681 IPI:IPI00644653
            SMR:Q5T7C4 Ensembl:ENST00000326004 Ensembl:ENST00000399489
            UCSC:uc001usv.3 Uniprot:Q5T7C4
        Length = 158

 Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
 Identities = 26/67 (38%), Positives = 38/67 (56%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NAPKRP SA+F+F  ++R   K   P   S+  + K  G+ W + +  +K PY +KA 
Sbjct:    91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAA 149

Query:    98 NKKAEYE 104
               K +YE
Sbjct:   150 KLKEKYE 156

 Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
 Identities = 22/74 (29%), Positives = 38/74 (51%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPD-NKSVAAMGKAGGQKWKSMSEAEKAPYVQKA 96
             D   P+  +S+Y  F++  R+  K+  PD + + +   K   ++WK+MS  EK  +   A
Sbjct:     5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64

Query:    97 LNKKAEYELALEAY 110
                KA YE  ++ Y
Sbjct:    65 KADKARYEREMKTY 78


>WB|WBGene00001974 [details] [associations]
            symbol:hmg-4 species:6239 "Caenorhabditis elegans"
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0009792 "embryo development ending in birth or
            egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
            [GO:0002119 "nematode larval development" evidence=IMP] [GO:0040011
            "locomotion" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
            [GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
            [GO:0040010 "positive regulation of growth rate" evidence=IMP]
            [GO:0007276 "gamete generation" evidence=IMP] InterPro:IPR009071
            InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
            GO:GO:0005634 GO:GO:0009792 GO:GO:0040007 GO:GO:0040010
            GO:GO:0005694 GO:GO:0002119 GO:GO:0006355 Gene3D:2.30.29.30
            InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
            GO:GO:0040011 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0040035 GO:GO:0007276
            EMBL:FO081094 GeneTree:ENSGT00700000104547 InterPro:IPR013719
            Pfam:PF08512 eggNOG:COG5165 KO:K09272 InterPro:IPR024954
            HOGENOM:HOG000180790 OMA:PVEVKKG PIR:T16908 RefSeq:NP_498633.1
            ProteinModelPortal:P41848 SMR:P41848 DIP:DIP-26608N
            MINT:MINT-1083096 STRING:P41848 PaxDb:P41848
            EnsemblMetazoa:T20B12.8 GeneID:176052 KEGG:cel:CELE_T20B12.8
            UCSC:T20B12.8 CTD:176052 WormBase:T20B12.8 InParanoid:P41848
            NextBio:890908 Uniprot:P41848
        Length = 697

 Score = 141 (54.7 bits), Expect = 1.3e-08, P = 1.3e-08
 Identities = 32/75 (42%), Positives = 42/75 (56%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NAPKR  SAY  +    R   KE   D  SVA + K GG KWK+MS  +K  + +KA 
Sbjct:   552 DPNAPKRATSAYMQWFLASRNELKE---DGDSVADVAKKGGAKWKTMSSDDKKKWEEKAE 608

Query:    98 NKKAEYELALEAYKK 112
               K+ YE  ++ Y+K
Sbjct:   609 EDKSRYEKEMKEYRK 623


>RGD|1589528 [details] [associations]
            symbol:LOC679344 "similar to High mobility group protein 1
            (HMG-1) (High mobility group protein B1) (Amphoterin)
            (Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
            [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] REFSEQ:XM_001054795 Ncbi:XP_001054795
        Length = 215

 Score = 130 (50.8 bits), Expect = 1.4e-08, P = 1.4e-08
 Identities = 35/116 (30%), Positives = 55/116 (47%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NAPKRP SA+F+F  ++    K   P   S+  + K  G+ W + +  +K P  +KA 
Sbjct:    91 DPNAPKRPPSAFFLFCSEYHPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPCEKKAA 149

Query:    98 NKKAEYELALEAYKKQLNDNGA--GV--SEDSWKXXXXXXXXXXXXXEINDEAEQE 149
               K +YE  + AY+ +   + A  GV  +E S K             E  +E E++
Sbjct:   150 KLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEDDEEDEEDEEEEEEEED 205

 Score = 96 (38.9 bits), Expect = 0.00075, P = 0.00075
 Identities = 20/66 (30%), Positives = 35/66 (53%)

Query:    46 LSAYFIFMEDFRKSFKESFPD-NKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYE 104
             +S+Y  F++  R+  K+  PD + + +   K   ++WK+MS  EK  +   A   KA YE
Sbjct:    13 MSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYE 72

Query:   105 LALEAY 110
               ++ Y
Sbjct:    73 REMKTY 78


>RGD|1592627 [details] [associations]
            symbol:LOC685520 "similar to High mobility group protein 1
            (HMG-1) (High mobility group protein B1) (Amphoterin)
            (Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
            [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] REFSEQ:XM_003749913 Ncbi:XP_003749961
        Length = 215

 Score = 130 (50.8 bits), Expect = 1.4e-08, P = 1.4e-08
 Identities = 35/116 (30%), Positives = 55/116 (47%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NAPKRP SA+F+F  ++    K   P   S+  + K  G+ W + +  +K P  +KA 
Sbjct:    91 DPNAPKRPPSAFFLFCSEYHPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPCEKKAA 149

Query:    98 NKKAEYELALEAYKKQLNDNGA--GV--SEDSWKXXXXXXXXXXXXXEINDEAEQE 149
               K +YE  + AY+ +   + A  GV  +E S K             E  +E E++
Sbjct:   150 KLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEDDEEDEEDEEEEEEEED 205

 Score = 96 (38.9 bits), Expect = 0.00075, P = 0.00075
 Identities = 20/66 (30%), Positives = 35/66 (53%)

Query:    46 LSAYFIFMEDFRKSFKESFPD-NKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYE 104
             +S+Y  F++  R+  K+  PD + + +   K   ++WK+MS  EK  +   A   KA YE
Sbjct:    13 MSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYE 72

Query:   105 LALEAY 110
               ++ Y
Sbjct:    73 REMKTY 78


>UNIPROTKB|Q08945 [details] [associations]
            symbol:SSRP1 "FACT complex subunit SSRP1" species:9606
            "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
            "DNA replication" evidence=IEA] [GO:0006281 "DNA repair"
            evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0003682 "chromatin binding"
            evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0005730
            "nucleolus" evidence=IEA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
            "transcription from RNA polymerase II promoter" evidence=TAS]
            [GO:0006368 "transcription elongation from RNA polymerase II
            promoter" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
            [GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
            "positive regulation of viral transcription" evidence=TAS]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
            evidence=IDA] Reactome:REACT_71 InterPro:IPR009071
            InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
            GO:GO:0005737 Reactome:REACT_116125 GO:GO:0005694 GO:GO:0005654
            GO:GO:0016032 GO:GO:0005730 GO:GO:0006355 Gene3D:2.30.29.30
            InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0006368 Reactome:REACT_1788 GO:GO:0050434 Reactome:REACT_1892
            InterPro:IPR013719 Pfam:PF08512 eggNOG:COG5165 KO:K09272
            InterPro:IPR024954 HOGENOM:HOG000180790 OMA:PVEVKKG CTD:6749
            HOVERGEN:HBG002932 OrthoDB:EOG41VK2K EMBL:M86737 EMBL:BC005116
            EMBL:BC091486 IPI:IPI00005154 PIR:A41976 RefSeq:NP_003137.1
            UniGene:Hs.523680 ProteinModelPortal:Q08945 SMR:Q08945 DIP:DIP-169N
            IntAct:Q08945 MINT:MINT-5004485 STRING:Q08945 PhosphoSite:Q08945
            DMDM:730840 PaxDb:Q08945 PeptideAtlas:Q08945 PRIDE:Q08945
            DNASU:6749 Ensembl:ENST00000278412 GeneID:6749 KEGG:hsa:6749
            UCSC:uc001njt.3 GeneCards:GC11M057093 HGNC:HGNC:11327 HPA:HPA002697
            MIM:604328 neXtProt:NX_Q08945 PharmGKB:PA36151 InParanoid:Q08945
            PhylomeDB:Q08945 ChiTaRS:SSRP1 GenomeRNAi:6749 NextBio:26328
            PMAP-CutDB:Q08945 ArrayExpress:Q08945 Bgee:Q08945 CleanEx:HS_SSRP1
            Genevestigator:Q08945 GermOnline:ENSG00000149136 Uniprot:Q08945
        Length = 709

 Score = 140 (54.3 bits), Expect = 1.7e-08, P = 1.7e-08
 Identities = 27/74 (36%), Positives = 45/74 (60%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NAPKRP+SAY +++   R+  K   P   S+  + K  G+ WK MS+ +K  + +KA 
Sbjct:   543 DPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKAE 601

Query:    98 NKKAEYELALEAYK 111
             + + +YE A++ Y+
Sbjct:   602 DARRDYEKAMKEYE 615


>RGD|1563668 [details] [associations]
            symbol:RGD1563668 "similar to High mobility group protein 1
            (HMG-1)" species:10116 "Rattus norvegicus" [GO:0003674
            "molecular_function" evidence=ND] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0008150 "biological_process" evidence=ND]
            REFSEQ:XM_001074778 Ncbi:XP_001074778
        Length = 211

 Score = 129 (50.5 bits), Expect = 1.7e-08, P = 1.7e-08
 Identities = 36/116 (31%), Positives = 54/116 (46%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NAPK P SA+F+F  ++R   K   P   S+  + K  G+ W + +  +K PY + A 
Sbjct:    91 DPNAPKTPPSAFFLFCSEYRPKIKGEHP-GLSIGDVVKKLGEMWTNTAADDKQPYEKMAA 149

Query:    98 NKKAEYELALEAYKKQLNDNGA--GV--SEDSWKXXXXXXXXXXXXXEINDEAEQE 149
               K +YE  + AY+ +   + A  GV  +E S K             E  +E E E
Sbjct:   150 KLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEDDEEDEEDEEEEEEEDE 205

 Score = 96 (38.9 bits), Expect = 0.00071, P = 0.00071
 Identities = 20/66 (30%), Positives = 35/66 (53%)

Query:    46 LSAYFIFMEDFRKSFKESFPD-NKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYE 104
             +S+Y  F++  R+  K+  PD + + +   K   ++WK+MS  EK  +   A   KA YE
Sbjct:    13 MSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYE 72

Query:   105 LALEAY 110
               ++ Y
Sbjct:    73 REMKTY 78


>POMBASE|SPAC57A10.09c [details] [associations]
            symbol:nhp6 "High-mobility group non-histone chromatin
            protein (predicted)" species:4896 "Schizosaccharomyces pombe"
            [GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0003677 "DNA
            binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005829 "cytosol" evidence=IDA] [GO:0006281 "DNA repair"
            evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=ISO]
            [GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006359
            "regulation of transcription from RNA polymerase III promoter"
            evidence=ISO] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=ISO] InterPro:IPR009071
            PomBase:SPAC57A10.09c Pfam:PF00505 GO:GO:0005829 EMBL:CU329670
            GenomeReviews:CU329670_GR GO:GO:0033554 GO:GO:0003677 GO:GO:0006281
            GO:GO:0045944 GO:GO:0006351 GO:GO:0006338 eggNOG:COG5648
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0000790 GO:GO:0006334 GO:GO:0006359 HOGENOM:HOG000197861
            OMA:LANPNNK OrthoDB:EOG4S7P0P PIR:T38936 RefSeq:NP_593314.1
            ProteinModelPortal:P87057 STRING:P87057
            EnsemblFungi:SPAC57A10.09c.1 GeneID:2542878 KEGG:spo:SPAC57A10.09c
            NextBio:20803918 Uniprot:P87057
        Length = 108

 Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 28/81 (34%), Positives = 42/81 (51%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D N PKR +SA+  F  + R+  K   PD  +   +G   G++WK ++  E+ PY +KA 
Sbjct:    12 DPNTPKRNMSAFMFFSIENREKMKTDNPD-ATFGQLGSLLGKRWKELTSTEREPYEEKAR 70

Query:    98 NKKAEYELALEAYKKQLNDNG 118
               K  YE   + Y  +L  NG
Sbjct:    71 QDKERYERERKEYDTKLA-NG 90


>DICTYBASE|DDB_G0270260 [details] [associations]
            symbol:nhp6 "HMG1/2 (high mobility group)
            box-containing protein" species:44689 "Dictyostelium discoideum"
            [GO:0006357 "regulation of transcription from RNA polymerase II
            promoter" evidence=ISS] [GO:0006325 "chromatin organization"
            evidence=ISS] [GO:0003682 "chromatin binding" evidence=ISS]
            [GO:0000790 "nuclear chromatin" evidence=ISS] [GO:0006974 "response
            to DNA damage stimulus" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0006281 "DNA
            repair" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
            InterPro:IPR009071 dictyBase:DDB_G0270260 Pfam:PF00505
            EMBL:AAFI02000005 GenomeReviews:CM000150_GR GO:GO:0003677
            GO:GO:0006281 GO:GO:0006357 GO:GO:0006351 GO:GO:0003682
            eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0000790 GO:GO:0006325 HSSP:P63159
            RefSeq:XP_646657.1 ProteinModelPortal:Q55C24 STRING:Q55C24
            EnsemblProtists:DDB0216420 GeneID:8617629 KEGG:ddi:DDB_G0270260
            OMA:ERVKNAN Uniprot:Q55C24
        Length = 141

 Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 32/89 (35%), Positives = 44/89 (49%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NAP+R LS +  F +D R   K S P N S   +G   GQ+W  +S  +K  Y + A 
Sbjct:    49 DENAPRRYLSPFIFFSKDHRSVIKNSHP-NCSFGEIGSLLGQEWAKISAEDKKKYEKLAA 107

Query:    98 NKKAEYELALEAYKKQLNDNG-AGVSEDS 125
               K  +EL  + Y ++L     A  S DS
Sbjct:   108 EDKKRWELEKKNYDEKLKTQSQAESSSDS 136


>CGD|CAF0007020 [details] [associations]
            symbol:NHP6A species:5476 "Candida albicans" [GO:0003677 "DNA
            binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0005829 "cytosol" evidence=IEA] [GO:0032301 "MutSalpha complex"
            evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
            [GO:0034724 "DNA replication-independent nucleosome organization"
            evidence=IEA] [GO:0070898 "RNA polymerase III transcriptional
            preinitiation complex assembly" evidence=IEA] [GO:0051123 "RNA
            polymerase II transcriptional preinitiation complex assembly"
            evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
            [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
            [GO:0008301 "DNA binding, bending" evidence=IEA] InterPro:IPR009071
            CGD:CAF0007020 Pfam:PF00505 GO:GO:0005634 GO:GO:0005694
            GO:GO:0006355 GO:GO:0003677 GO:GO:0006281 GO:GO:0006351
            eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 EMBL:AACQ01000005 EMBL:AACQ01000006 EMBL:AF196333
            ProteinModelPortal:Q9UVL1 SMR:Q9UVL1 STRING:Q9UVL1 Uniprot:Q9UVL1
        Length = 92

 Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
 Identities = 29/76 (38%), Positives = 39/76 (51%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D +APKR LSAY  F  + R   +   P   S   +GK  G+KWK+++  +K PY  KA 
Sbjct:    15 DPDAPKRSLSAYMFFANENRDIVRAENP-GISFGQVGKLLGEKWKALNSEDKLPYENKAE 73

Query:    98 NKKAEYELALEAYKKQ 113
               K  YE     Y K+
Sbjct:    74 ADKKRYEKEKAEYAKK 89


>FB|FBgn0004362 [details] [associations]
            symbol:HmgD "High mobility group protein D" species:7227
            "Drosophila melanogaster" [GO:0000790 "nuclear chromatin"
            evidence=IDA] [GO:0006325 "chromatin organization" evidence=IDA]
            [GO:0003680 "AT DNA binding" evidence=IDA] [GO:0008301 "DNA
            binding, bending" evidence=IDA;NAS] [GO:0007517 "muscle organ
            development" evidence=IMP] [GO:0048813 "dendrite morphogenesis"
            evidence=IMP] InterPro:IPR009071 Pfam:PF00505 EMBL:AE013599
            GO:GO:0005634 GO:GO:0005694 GO:GO:0008301 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0048813
            GO:GO:0007517 GO:GO:0006325 GO:GO:0003680 eggNOG:NOG320947
            EMBL:M77023 EMBL:X71138 EMBL:AM294353 EMBL:AM294354 EMBL:AM294355
            EMBL:AM294356 EMBL:AM294357 EMBL:AM294358 EMBL:AM294359
            EMBL:AM294360 EMBL:AM294361 EMBL:AM294362 EMBL:AM294363
            EMBL:AY118333 PIR:A44382 RefSeq:NP_001163244.1 RefSeq:NP_726109.1
            RefSeq:NP_726110.1 UniGene:Dm.7318 PDB:1E7J PDB:1HMA PDB:1QRV
            PDB:3NM9 PDBsum:1E7J PDBsum:1HMA PDBsum:1QRV PDBsum:3NM9
            ProteinModelPortal:Q05783 SMR:Q05783 DIP:DIP-22805N IntAct:Q05783
            MINT:MINT-843935 STRING:Q05783 PaxDb:Q05783 PRIDE:Q05783
            EnsemblMetazoa:FBtr0071708 EnsemblMetazoa:FBtr0071709
            EnsemblMetazoa:FBtr0301410 GeneID:37481 KEGG:dme:Dmel_CG17950
            CTD:37481 FlyBase:FBgn0004362 GeneTree:ENSGT00700000104547
            InParanoid:Q05783 OMA:WRAMSEQ OrthoDB:EOG4TX98R PhylomeDB:Q05783
            ChiTaRS:HmgD EvolutionaryTrace:Q05783 GenomeRNAi:37481
            NextBio:803865 Bgee:Q05783 GermOnline:CG17950 Uniprot:Q05783
        Length = 112

 Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
 Identities = 32/114 (28%), Positives = 55/114 (48%)

Query:    39 SNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALN 98
             S+ PKRPLSAY +++   R+S K   P  K V  + K GG+ W++M +  K+ +  KA  
Sbjct:     2 SDKPKRPLSAYMLWLNSARESIKRENPGIK-VTEVAKRGGELWRAMKD--KSEWEAKAAK 58

Query:    99 KKAEYELALEAYKKQLND---NGAGVSEDSWKXXXXXXXXXXXXXEINDEAEQE 149
              K +Y+ A++ ++        NG G  + +               + +D+ E E
Sbjct:    59 AKDDYDRAVKEFEANGGSSAANGGGAKKRAKPAKKVAKKSKKEESDEDDDDESE 112


>UNIPROTKB|Q9UVL1 [details] [associations]
            symbol:NHP6 "Non-histone chromosomal protein 6"
            species:237561 "Candida albicans SC5314" [GO:0003677 "DNA binding"
            evidence=IDA] InterPro:IPR009071 CGD:CAF0007020 Pfam:PF00505
            GO:GO:0005634 GO:GO:0005694 GO:GO:0006355 GO:GO:0003677
            GO:GO:0006281 GO:GO:0006351 eggNOG:COG5648 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AACQ01000005
            EMBL:AACQ01000006 EMBL:AF196333 ProteinModelPortal:Q9UVL1
            SMR:Q9UVL1 STRING:Q9UVL1 Uniprot:Q9UVL1
        Length = 92

 Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
 Identities = 29/76 (38%), Positives = 39/76 (51%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D +APKR LSAY  F  + R   +   P   S   +GK  G+KWK+++  +K PY  KA 
Sbjct:    15 DPDAPKRSLSAYMFFANENRDIVRAENP-GISFGQVGKLLGEKWKALNSEDKLPYENKAE 73

Query:    98 NKKAEYELALEAYKKQ 113
               K  YE     Y K+
Sbjct:    74 ADKKRYEKEKAEYAKK 89


>UNIPROTKB|B2RPK0 [details] [associations]
            symbol:HMGB1P1 "Putative high mobility group protein
            B1-like 1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005694
            "chromosome" evidence=IEA] InterPro:IPR009071 PROSITE:PS00353
            Pfam:PF00505 GO:GO:0005634 GO:GO:0005694 GO:GO:0003677
            eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 Pfam:PF09011 EMBL:AL160176 UniGene:Hs.131543
            EMBL:BC137482 EMBL:BC137483 IPI:IPI00022796
            ProteinModelPortal:B2RPK0 SMR:B2RPK0 STRING:B2RPK0 PaxDb:B2RPK0
            PRIDE:B2RPK0 GeneCards:GC20M056062 HGNC:HGNC:4993
            neXtProt:NX_B2RPK0 InParanoid:B2RPK0 OrthoDB:EOG4KWJV1
            PhylomeDB:B2RPK0 NextBio:39267 Genevestigator:B2RPK0 Uniprot:B2RPK0
        Length = 211

 Score = 125 (49.1 bits), Expect = 5.1e-08, P = 5.1e-08
 Identities = 26/74 (35%), Positives = 40/74 (54%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NAPKRP SA+F+F  ++    K   P   S+  + K  G+ W + +  +K P  +KA 
Sbjct:    91 DPNAPKRPPSAFFLFCSEYHPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPGEKKAA 149

Query:    98 NKKAEYELALEAYK 111
               K +YE  + AY+
Sbjct:   150 KLKEKYEKDIAAYQ 163


>ZFIN|ZDB-GENE-041008-209 [details] [associations]
            symbol:ssrp1b "structure specific recognition
            protein 1b" species:7955 "Danio rerio" [GO:0005634 "nucleus"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR009071
            InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
            ZFIN:ZDB-GENE-041008-209 GO:GO:0005634 Gene3D:2.30.29.30
            InterPro:IPR011993 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00700000104547
            InterPro:IPR013719 Pfam:PF08512 InterPro:IPR024954 EMBL:BX511158
            IPI:IPI00502576 PRIDE:F6NLJ7 Ensembl:ENSDART00000131296 Bgee:F6NLJ7
            Uniprot:F6NLJ7
        Length = 703

 Score = 135 (52.6 bits), Expect = 5.7e-08, P = 5.7e-08
 Identities = 31/90 (34%), Positives = 47/90 (52%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             DS APKRP+SAY +++   R   K   P   S+  + K  G+ WK + + +K  +  KA 
Sbjct:   539 DSGAPKRPMSAYMLWLNSSRDRIKSENP-GISITEISKKAGEMWKQLGKDKKEEWDGKAE 597

Query:    98 NKKAEYELALEAYKKQLNDNGAGVSEDSWK 127
               K EY+ A+  Y+    ++G G S  S K
Sbjct:   598 EAKKEYDRAMREYR----ESGGGSSGSSKK 623


>ZFIN|ZDB-GENE-031118-9 [details] [associations]
            symbol:ssrp1a "structure specific recognition protein
            1a" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR009071 InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505
            Pfam:PF03531 ZFIN:ZDB-GENE-031118-9 GO:GO:0005634 Gene3D:2.30.29.30
            InterPro:IPR011993 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00700000104547
            InterPro:IPR013719 Pfam:PF08512 InterPro:IPR024954 EMBL:BX510356
            IPI:IPI00487997 Ensembl:ENSDART00000137795 ArrayExpress:F1QEB4
            Bgee:F1QEB4 Uniprot:F1QEB4
        Length = 705

 Score = 135 (52.6 bits), Expect = 5.7e-08, P = 5.7e-08
 Identities = 29/90 (32%), Positives = 47/90 (52%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D+ APKRP+SAY +++   R+  K   P   S+  + K  G+ WK + + +K  + +KA 
Sbjct:   542 DAAAPKRPMSAYMLWLNGNRERIKSENP-GISITEISKKAGEMWKQLGKDKKEEWDKKAE 600

Query:    98 NKKAEYELALEAYKKQLNDNGAGVSEDSWK 127
               K +YE A++ YK+      A   E   K
Sbjct:   601 EAKRQYEKAMKEYKESGGGAAAATKEKKKK 630


>UNIPROTKB|E1BIF8 [details] [associations]
            symbol:E1BIF8 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
            PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            Pfam:PF09011 GeneTree:ENSGT00560000076717 EMBL:DAAA02073284
            IPI:IPI00728960 Ensembl:ENSBTAT00000006714 OMA:RAISEMW
            Uniprot:E1BIF8
        Length = 194

 Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NAPKRP S +F+F  +F    K + P   S+  + K  G+ W ++S+++K  YV K  
Sbjct:    86 DPNAPKRPPSGFFLFFSEFCSEIKSTNP-GISIGDVAKKLGEMWNNLSDSKKQLYVNKDA 144

Query:    98 NKKAEYELALEAYKKQLN 115
               K +YE  +  YK + +
Sbjct:   145 KLK-KYEKDVADYKGEFD 161


>UNIPROTKB|F1NLS2 [details] [associations]
            symbol:TFAM "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003682 "chromatin binding" evidence=IEA] [GO:0006391
            "transcription initiation from mitochondrial promoter"
            evidence=IEA] [GO:0033108 "mitochondrial respiratory chain complex
            assembly" evidence=IEA] [GO:0042645 "mitochondrial nucleoid"
            evidence=IEA] [GO:0045893 "positive regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0070363 "mitochondrial light
            strand promoter sense binding" evidence=IEA] InterPro:IPR009071
            Pfam:PF00505 GO:GO:0045893 GO:GO:0003682 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0042645
            GO:GO:0033108 GO:GO:0006391 GO:GO:0070363 OMA:YENEMKS
            GeneTree:ENSGT00440000039001 EMBL:AADN02035299 IPI:IPI00588565
            Ensembl:ENSGALT00000041096 ArrayExpress:F1NLS2 Uniprot:F1NLS2
        Length = 264

 Score = 127 (49.8 bits), Expect = 7.0e-08, P = 7.0e-08
 Identities = 30/87 (34%), Positives = 46/87 (52%)

Query:    42 PKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKA 101
             PKRPLSAYF F+ D + +F++  P+  S+  + K  G  W+ +  ++K  Y +       
Sbjct:    47 PKRPLSAYFRFLRDNQPAFRQQNPELNSLELVKKLAGV-WRELPASQKQVYEEARKTDWR 105

Query:   102 EYELALEAYKKQLND-NGAGVSEDSWK 127
             +YE  L AYK QL     A + E+  K
Sbjct:   106 KYEEQLAAYKAQLTPAQAAALKEERRK 132


>RGD|1588759 [details] [associations]
            symbol:Hmgb1-ps3 "high mobility group box 1, pseudogene 3"
            species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
            evidence=ND] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005575
            "cellular_component" evidence=ND] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
            InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
            RGD:1588759 GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
            OrthoDB:EOG4KWJV1 GeneTree:ENSGT00560000076717 IPI:IPI00366734
            Ensembl:ENSRNOT00000046626 Uniprot:D3ZGW6
        Length = 212

 Score = 122 (48.0 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 26/74 (35%), Positives = 40/74 (54%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NAPKRP  A+F+F  ++R   K   P   S+  + K  G+ W + +  +K P  +KA 
Sbjct:    91 DPNAPKRPPLAFFLFCSEYRPKIKGEHP-GLSIGDVVKKLGEMWNNTAVDDKQPCEKKAA 149

Query:    98 NKKAEYELALEAYK 111
               K +YE  + AY+
Sbjct:   150 KLKEKYEKDIAAYR 163

 Score = 102 (41.0 bits), Expect = 2.5e-05, P = 2.5e-05
 Identities = 21/74 (28%), Positives = 38/74 (51%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPD-NKSVAAMGKAGGQKWKSMSEAEKAPYVQKA 96
             D   P+  +S+Y  F++  ++  K+  PD + + +   K   ++WK+MS  EK  +   A
Sbjct:     5 DPKKPRGKMSSYAFFVQTCQEEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64

Query:    97 LNKKAEYELALEAY 110
                KA YE  ++ Y
Sbjct:    65 KADKARYEREMKTY 78


>SGD|S000004676 [details] [associations]
            symbol:ABF2 "Mitochondrial DNA-binding protein" species:4932
            "Saccharomyces cerevisiae" [GO:0005739 "mitochondrion"
            evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0090139
            "mitochondrial DNA packaging" evidence=IMP] [GO:0000001
            "mitochondrion inheritance" evidence=IMP] [GO:0000002
            "mitochondrial genome maintenance" evidence=IMP] [GO:0003677 "DNA
            binding" evidence=IEA;IDA] [GO:0000262 "mitochondrial chromosome"
            evidence=IDA] [GO:0008301 "DNA binding, bending" evidence=IDA]
            [GO:0042645 "mitochondrial nucleoid" evidence=IDA]
            InterPro:IPR009071 SGD:S000004676 Pfam:PF00505 GO:GO:0005634
            EMBL:M73753 EMBL:AJ223169 EMBL:Z48952 EMBL:AY557967 EMBL:BK006946
            PIR:A41302 RefSeq:NP_013788.1 ProteinModelPortal:Q02486 SMR:Q02486
            DIP:DIP-5492N IntAct:Q02486 MINT:MINT-505363 STRING:Q02486
            PaxDb:Q02486 PeptideAtlas:Q02486 EnsemblFungi:YMR072W GeneID:855094
            KEGG:sce:YMR072W CYGD:YMR072w eggNOG:COG5648
            GeneTree:ENSGT00680000100562 OMA:FHESSKP OrthoDB:EOG483HF0
            NextBio:978405 Genevestigator:Q02486 GermOnline:YMR072W
            GO:GO:0000262 GO:GO:0008301 GO:GO:0090139 GO:GO:0000001
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            Uniprot:Q02486
        Length = 183

 Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 23/73 (31%), Positives = 42/73 (57%)

Query:    42 PKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKA 101
             PKRP SAYF++++D R  F +  P  +  A + K  G+KW+++    K  Y+ +     +
Sbjct:    43 PKRPTSAYFLYLQDHRSQFVKENPTLRP-AEISKIAGEKWQNLEADIKEKYISERKKLYS 101

Query:   102 EYELALEAYKKQL 114
             EY+ A + + ++L
Sbjct:   102 EYQKAKKEFDEKL 114


>RGD|1560584 [details] [associations]
            symbol:RGD1560584 "similar to High mobility group protein 1
            (HMG-1)" species:10116 "Rattus norvegicus" [GO:0003674
            "molecular_function" evidence=ND] [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR009071
            InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
            GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 Pfam:PF09011 OrthoDB:EOG4KWJV1
            GeneTree:ENSGT00560000076717 IPI:IPI00559222
            Ensembl:ENSRNOT00000049438 Uniprot:D3ZIU9
        Length = 204

 Score = 120 (47.3 bits), Expect = 1.7e-07, P = 1.7e-07
 Identities = 26/74 (35%), Positives = 40/74 (54%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NA KRP SA+F+F  ++R   K   P   S+  + K  G+ W + +  +K P  +KA 
Sbjct:    91 DPNALKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWTNTAVDDKQPCEKKAA 149

Query:    98 NKKAEYELALEAYK 111
               K +YE  + AY+
Sbjct:   150 KLKEKYEKDIAAYR 163


>SGD|S000001515 [details] [associations]
            symbol:IXR1 "Protein that binds DNA intrastrand cross-links
            formed by cisplatin" species:4932 "Saccharomyces cerevisiae"
            [GO:0043565 "sequence-specific DNA binding" evidence=IDA]
            [GO:0000790 "nuclear chromatin" evidence=IDA] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0071456 "cellular response to hypoxia" evidence=IGI;IMP]
            [GO:0006281 "DNA repair" evidence=IGI] [GO:0000122 "negative
            regulation of transcription from RNA polymerase II promoter"
            evidence=IMP] [GO:0003684 "damaged DNA binding" evidence=IDA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IEA] InterPro:IPR009071 SGD:S000001515 Pfam:PF00505
            GO:GO:0005634 GO:GO:0003684 GO:GO:0043565 GO:GO:0006281
            GO:GO:0071456 GO:GO:0006351 EMBL:BK006944 GO:GO:0000122
            eggNOG:COG5648 GeneTree:ENSGT00680000100562 OrthoDB:EOG483HF0
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            EMBL:X71622 EMBL:L16900 EMBL:Z28032 PIR:S37849 RefSeq:NP_012893.3
            RefSeq:NP_012897.3 ProteinModelPortal:P33417 SMR:P33417
            IntAct:P33417 STRING:P33417 PaxDb:P33417 PeptideAtlas:P33417
            EnsemblFungi:YKL032C GeneID:853836 GeneID:853840 KEGG:sce:YKL028W
            KEGG:sce:YKL032C CYGD:YKL032c KO:K03136 NextBio:975043
            Genevestigator:P33417 GermOnline:YKL032C Uniprot:P33417
        Length = 597

 Score = 129 (50.5 bits), Expect = 2.0e-07, P = 2.0e-07
 Identities = 24/73 (32%), Positives = 40/73 (54%)

Query:    42 PKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKA 101
             PKRP SAYF+F    R    + FP+ K V  + K    +WK +++ +K P+ ++      
Sbjct:   361 PKRPSSAYFLFSMSIRNELLQQFPEAK-VPELSKLASARWKELTDDQKKPFYEEFRTNWE 419

Query:   102 EYELALEAYKKQL 114
             +Y +  +AY+K L
Sbjct:   420 KYRVVRDAYEKTL 432


>UNIPROTKB|Q9W602 [details] [associations]
            symbol:ssrp1 "FACT complex subunit SSRP1" species:8355
            "Xenopus laevis" [GO:0005515 "protein binding" evidence=IPI]
            InterPro:IPR009071 InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505
            Pfam:PF03531 GO:GO:0005694 GO:GO:0005730 GO:GO:0006355
            Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260
            GO:GO:0006281 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 InterPro:IPR013719 Pfam:PF08512
            KO:K09272 InterPro:IPR024954 CTD:6749 HOVERGEN:HBG002932
            EMBL:AB004793 EMBL:BC082613 RefSeq:NP_001084164.1 UniGene:Xl.336
            ProteinModelPortal:Q9W602 PRIDE:Q9W602 GeneID:399344
            KEGG:xla:399344 Xenbase:XB-GENE-994299 Uniprot:Q9W602
        Length = 693

 Score = 129 (50.5 bits), Expect = 2.5e-07, P = 2.5e-07
 Identities = 26/73 (35%), Positives = 42/73 (57%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D  APKRP+SAY +++   R+  K   P   S+  + K  G+ WK+MS  +K  + ++A 
Sbjct:   537 DPGAPKRPMSAYMLWLNASREKIKSENP-GISITDLSKKAGEIWKNMSRDKKEEWDRRAE 595

Query:    98 NKKAEYELALEAY 110
               K +YE A++ Y
Sbjct:   596 EAKRDYEKAMKEY 608


>ZFIN|ZDB-GENE-050417-290 [details] [associations]
            symbol:hmgb3b "high-mobility group box 3b"
            species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
            InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
            ZFIN:ZDB-GENE-050417-290 GO:GO:0005634 GO:GO:0003677 eggNOG:COG5648
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            Pfam:PF09011 HOGENOM:HOG000197861 HOVERGEN:HBG009000 KO:K11296
            EMBL:BC093186 IPI:IPI00511002 RefSeq:NP_001017769.1
            UniGene:Dr.75880 ProteinModelPortal:Q567G0 SMR:Q567G0 GeneID:550466
            KEGG:dre:550466 CTD:550466 InParanoid:Q567G0 OrthoDB:EOG4TB4CM
            NextBio:20879710 ArrayExpress:Q567G0 Uniprot:Q567G0
        Length = 198

 Score = 118 (46.6 bits), Expect = 2.6e-07, P = 2.6e-07
 Identities = 24/76 (31%), Positives = 42/76 (55%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NAP+RP S +F+F  + R   K   P +  +  + K  G  W ++S++EK P++  A 
Sbjct:    90 DPNAPRRPPSGFFLFCAEQRPIIKAQNP-SLGIGDVAKKLGGMWNNLSDSEKQPFLSNAD 148

Query:    98 NKKAEYELALEAYKKQ 113
               K +Y+  +  Y+K+
Sbjct:   149 KLKDKYQKDMAFYRKK 164


>UNIPROTKB|D6R9A6 [details] [associations]
            symbol:HMGB2 "High mobility group protein B2" species:9606
            "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0007289 "spermatid nucleus
            differentiation" evidence=IEA] [GO:0008584 "male gonad development"
            evidence=IEA] [GO:0019904 "protein domain specific binding"
            evidence=IEA] [GO:0043388 "positive regulation of DNA binding"
            evidence=IEA] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=IEA] [GO:0048545
            "response to steroid hormone stimulus" evidence=IEA]
            InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
            GO:GO:0005634 GO:GO:0003677 GO:GO:0045944 GO:GO:0048545
            GO:GO:0008584 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0007289 GO:GO:0043388 Pfam:PF09011
            HOGENOM:HOG000197861 HGNC:HGNC:5000 ChiTaRS:HMGB2 EMBL:AC097534
            IPI:IPI00967671 ProteinModelPortal:D6R9A6 SMR:D6R9A6
            Ensembl:ENST00000506267 ArrayExpress:D6R9A6 Bgee:D6R9A6
            Uniprot:D6R9A6
        Length = 134

 Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 26/88 (29%), Positives = 45/88 (51%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNK-SVAAMGKAGGQKWKSMSEAEKAPYVQKA 96
             D N P+  +S+Y  F++  R+  K+  PD+  + A   K   ++WK+MS  EK+ +   A
Sbjct:     5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64

Query:    97 LNKKAEYELALEAYKKQLNDNGAGVSED 124
              + KA Y+  ++ Y     D   G  +D
Sbjct:    65 KSDKARYDREMKNYVPPKGDK-KGKKKD 91


>CGD|CAL0004040 [details] [associations]
            symbol:HMO1 species:5476 "Candida albicans" [GO:0000790
            "nuclear chromatin" evidence=IPI] [GO:0043565 "sequence-specific
            DNA binding" evidence=IDA] [GO:0019318 "hexose metabolic process"
            evidence=IPI] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IPI] [GO:0032443 "regulation of ergosterol
            biosynthetic process" evidence=IPI] [GO:0007346 "regulation of
            mitotic cell cycle" evidence=IPI] [GO:1900461 "positive regulation
            of pseudohyphal growth by positive regulation of transcription from
            RNA polymerase II promoter" evidence=IGI] [GO:2000220 "regulation
            of pseudohyphal growth" evidence=IGI] [GO:0044182 "filamentous
            growth of a population of unicellular organisms" evidence=IMP]
            [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0008301 "DNA binding, bending" evidence=IEA]
            [GO:0003690 "double-stranded DNA binding" evidence=IEA] [GO:0000400
            "four-way junction DNA binding" evidence=IEA] [GO:0060962
            "regulation of ribosomal protein gene transcription from RNA
            polymerase II promoter" evidence=IEA] [GO:0034401 "regulation of
            transcription by chromatin organization" evidence=IEA] [GO:0006356
            "regulation of transcription from RNA polymerase I promoter"
            evidence=IEA] InterPro:IPR009071 CGD:CAL0004040 Pfam:PF00505
            GO:GO:0007346 GO:GO:0043565 eggNOG:COG5648 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:1900461
            GO:GO:0044182 GO:GO:0032443 EMBL:AACQ01000165 EMBL:AACQ01000186
            GO:GO:0019318 RefSeq:XP_711711.1 RefSeq:XP_712185.1
            ProteinModelPortal:Q59PR9 STRING:Q59PR9 GeneID:3646217
            GeneID:3646685 KEGG:cal:CaO19.13966 KEGG:cal:CaO19.6645
            Uniprot:Q59PR9
        Length = 223

 Score = 118 (46.6 bits), Expect = 4.4e-07, P = 4.4e-07
 Identities = 30/86 (34%), Positives = 45/86 (52%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSF--KESFPDNKSVAA--MGKAGGQKWKSMSEAEKAPYV 93
             D NAPK+PL+ +F F  D RK    +    D  S++A  M      +W S+SEAEKA Y 
Sbjct:    83 DPNAPKKPLTMFFQFSYDLRKKIGIERKKKDLPSLSAIDMNSMIKDRWDSISEAEKAGYK 142

Query:    94 QKALNKKAEYELALEAYKKQLNDNGA 119
             ++  +    Y +  + Y++ L D  A
Sbjct:   143 KRYDDAMIIYNIEKKKYEESLKDGSA 168


>UNIPROTKB|Q59PR9 [details] [associations]
            symbol:HMO1 "Potential HMG-like DNA binding protein Hmo1p"
            species:237561 "Candida albicans SC5314" [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IPI] [GO:0007346 "regulation
            of mitotic cell cycle" evidence=IPI] [GO:0019318 "hexose metabolic
            process" evidence=IPI] [GO:0032443 "regulation of ergosterol
            biosynthetic process" evidence=IPI] [GO:0043565 "sequence-specific
            DNA binding" evidence=IDA] [GO:0044182 "filamentous growth of a
            population of unicellular organisms" evidence=IMP] [GO:1900461
            "positive regulation of pseudohyphal growth by positive regulation
            of transcription from RNA polymerase II promoter" evidence=IGI]
            [GO:2000220 "regulation of pseudohyphal growth" evidence=IGI]
            [GO:0000790 "nuclear chromatin" evidence=IPI] InterPro:IPR009071
            CGD:CAL0004040 Pfam:PF00505 GO:GO:0007346 GO:GO:0043565
            eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:1900461 GO:GO:0044182 GO:GO:0032443
            EMBL:AACQ01000165 EMBL:AACQ01000186 GO:GO:0019318
            RefSeq:XP_711711.1 RefSeq:XP_712185.1 ProteinModelPortal:Q59PR9
            STRING:Q59PR9 GeneID:3646217 GeneID:3646685 KEGG:cal:CaO19.13966
            KEGG:cal:CaO19.6645 Uniprot:Q59PR9
        Length = 223

 Score = 118 (46.6 bits), Expect = 4.4e-07, P = 4.4e-07
 Identities = 30/86 (34%), Positives = 45/86 (52%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSF--KESFPDNKSVAA--MGKAGGQKWKSMSEAEKAPYV 93
             D NAPK+PL+ +F F  D RK    +    D  S++A  M      +W S+SEAEKA Y 
Sbjct:    83 DPNAPKKPLTMFFQFSYDLRKKIGIERKKKDLPSLSAIDMNSMIKDRWDSISEAEKAGYK 142

Query:    94 QKALNKKAEYELALEAYKKQLNDNGA 119
             ++  +    Y +  + Y++ L D  A
Sbjct:   143 KRYDDAMIIYNIEKKKYEESLKDGSA 168


>UNIPROTKB|F1REZ8 [details] [associations]
            symbol:TOX3 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0051219 "phosphoprotein binding" evidence=IEA]
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0043524 "negative regulation of neuron apoptotic
            process" evidence=IEA] [GO:0042803 "protein homodimerization
            activity" evidence=IEA] [GO:0034056 "estrogen response element
            binding" evidence=IEA] [GO:0003682 "chromatin binding"
            evidence=IEA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0045893
            GO:GO:0043524 GO:GO:0003682 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0034056
            GeneTree:ENSGT00560000076898 OMA:HSLIMRS EMBL:CU442721
            EMBL:CU457410 Ensembl:ENSSSCT00000003136 Uniprot:F1REZ8
        Length = 542

 Score = 125 (49.1 bits), Expect = 4.7e-07, P = 4.7e-07
 Identities = 29/88 (32%), Positives = 43/88 (48%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D N P++P+SAY +F  D + + K   P N +   + K     W S+ E +K  Y +K  
Sbjct:   222 DPNEPQKPVSAYALFFRDTQAAIKGQNP-NATFGEVSKIVASMWDSLGEEQKQVYKRKTE 280

Query:    98 NKKAEYELALEAYKKQLNDNGAGVSEDS 125
               K EY  AL AY+  L    A  S ++
Sbjct:   281 AAKKEYLKALAAYRASLVSKAAAESAEA 308


>UNIPROTKB|E1BKT2 [details] [associations]
            symbol:TOX3 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0051219 "phosphoprotein binding" evidence=IEA]
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0043524 "negative regulation of neuron apoptotic
            process" evidence=IEA] [GO:0042803 "protein homodimerization
            activity" evidence=IEA] [GO:0034056 "estrogen response element
            binding" evidence=IEA] [GO:0003682 "chromatin binding"
            evidence=IEA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0045893
            GO:GO:0043524 GO:GO:0003682 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0034056
            GeneTree:ENSGT00560000076898 CTD:27324 OMA:HSLIMRS
            EMBL:DAAA02046427 EMBL:DAAA02046428 EMBL:DAAA02046429
            EMBL:DAAA02046430 IPI:IPI00715207 RefSeq:XP_002694823.1
            RefSeq:XP_885168.3 ProteinModelPortal:E1BKT2
            Ensembl:ENSBTAT00000000539 GeneID:539135 KEGG:bta:539135
            NextBio:20877802 Uniprot:E1BKT2
        Length = 556

 Score = 125 (49.1 bits), Expect = 4.8e-07, P = 4.8e-07
 Identities = 29/88 (32%), Positives = 43/88 (48%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D N P++P+SAY +F  D + + K   P N +   + K     W S+ E +K  Y +K  
Sbjct:   251 DPNEPQKPVSAYALFFRDTQAAIKGQNP-NATFGEVSKIVASMWDSLGEEQKQVYKRKTE 309

Query:    98 NKKAEYELALEAYKKQLNDNGAGVSEDS 125
               K EY  AL AY+  L    A  S ++
Sbjct:   310 AAKKEYLKALAAYRASLVSKAAAESAEA 337


>MGI|MGI:3039593 [details] [associations]
            symbol:Tox3 "TOX high mobility group box family member 3"
            species:10090 "Mus musculus" [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0003682 "chromatin binding" evidence=ISO]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0006915 "apoptotic
            process" evidence=IEA] [GO:0019722 "calcium-mediated signaling"
            evidence=ISO] [GO:0034056 "estrogen response element binding"
            evidence=ISO] [GO:0042803 "protein homodimerization activity"
            evidence=ISO] [GO:0043524 "negative regulation of neuron apoptotic
            process" evidence=ISO] [GO:0045893 "positive regulation of
            transcription, DNA-dependent" evidence=ISO] [GO:0051219
            "phosphoprotein binding" evidence=ISO] InterPro:IPR009071
            PROSITE:PS00353 MGI:MGI:3039593 Pfam:PF00505 GO:GO:0005634
            GO:GO:0006915 GO:GO:0045893 GO:GO:0042803 GO:GO:0043524
            GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0034056
            GeneTree:ENSGT00560000076898 HOGENOM:HOG000230949
            HOVERGEN:HBG051183 HSSP:Q66JW3 CTD:27324 eggNOG:NOG284736
            OMA:HSLIMRS ChiTaRS:TOX3 EMBL:AK082602 EMBL:BC052044
            IPI:IPI00330486 RefSeq:NP_766501.2 UniGene:Mm.302755
            ProteinModelPortal:Q80W03 SMR:Q80W03 STRING:Q80W03
            PhosphoSite:Q80W03 PaxDb:Q80W03 PRIDE:Q80W03
            Ensembl:ENSMUST00000109621 GeneID:244579 KEGG:mmu:244579
            UCSC:uc009msb.2 InParanoid:Q80W03 OrthoDB:EOG4K0QNS NextBio:386323
            Bgee:Q80W03 CleanEx:MM_TOX3 Genevestigator:Q80W03 Uniprot:Q80W03
        Length = 575

 Score = 125 (49.1 bits), Expect = 5.1e-07, P = 5.1e-07
 Identities = 29/88 (32%), Positives = 43/88 (48%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D N P++P+SAY +F  D + + K   P N +   + K     W S+ E +K  Y +K  
Sbjct:   250 DPNEPQKPVSAYALFFRDTQAAIKGQNP-NATFGEVSKIVASMWDSLGEEQKQVYKRKTE 308

Query:    98 NKKAEYELALEAYKKQLNDNGAGVSEDS 125
               K EY  AL AY+  L    A  S ++
Sbjct:   309 AAKKEYLKALAAYRASLVSKAAAESAEA 336


>UNIPROTKB|O15405 [details] [associations]
            symbol:TOX3 "TOX high mobility group box family member 3"
            species:9606 "Homo sapiens" [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0006915 "apoptotic process"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0051219
            "phosphoprotein binding" evidence=IPI] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0045893 "positive regulation of
            transcription, DNA-dependent" evidence=IDA] [GO:0042803 "protein
            homodimerization activity" evidence=IDA] [GO:0034056 "estrogen
            response element binding" evidence=IDA] [GO:0003682 "chromatin
            binding" evidence=IDA] [GO:0043524 "negative regulation of neuron
            apoptotic process" evidence=IDA] InterPro:IPR009071 PROSITE:PS00353
            Pfam:PF00505 GO:GO:0005634 GO:GO:0006915 GO:GO:0045893
            GO:GO:0042803 GO:GO:0043524 GO:GO:0006351 GO:GO:0003682
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0034056 HOGENOM:HOG000230949 HOVERGEN:HBG051183 EMBL:AK299202
            EMBL:AC007490 EMBL:U80736 IPI:IPI00903025 IPI:IPI00929129
            RefSeq:NP_001073899.2 RefSeq:NP_001139660.1 UniGene:Hs.460789
            HSSP:Q66JW3 ProteinModelPortal:O15405 SMR:O15405 STRING:O15405
            PhosphoSite:O15405 PaxDb:O15405 PRIDE:O15405 DNASU:27324
            Ensembl:ENST00000219746 Ensembl:ENST00000407228 GeneID:27324
            KEGG:hsa:27324 UCSC:uc002egw.2 CTD:27324 GeneCards:GC16M052471
            H-InvDB:HIX0013031 HGNC:HGNC:11972 HPA:HPA040376 MIM:611416
            neXtProt:NX_O15405 PharmGKB:PA162406752 eggNOG:NOG284736
            OMA:HSLIMRS ChiTaRS:TOX3 GenomeRNAi:27324 NextBio:50340
            ArrayExpress:O15405 Bgee:O15405 CleanEx:HS_TOX3
            Genevestigator:O15405 Uniprot:O15405
        Length = 576

 Score = 125 (49.1 bits), Expect = 5.1e-07, P = 5.1e-07
 Identities = 29/88 (32%), Positives = 43/88 (48%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D N P++P+SAY +F  D + + K   P N +   + K     W S+ E +K  Y +K  
Sbjct:   251 DPNEPQKPVSAYALFFRDTQAAIKGQNP-NATFGEVSKIVASMWDSLGEEQKQVYKRKTE 309

Query:    98 NKKAEYELALEAYKKQLNDNGAGVSEDS 125
               K EY  AL AY+  L    A  S ++
Sbjct:   310 AAKKEYLKALAAYRASLVSKAAAESAEA 337


>RGD|1311529 [details] [associations]
            symbol:Tox3 "TOX high mobility group box family member 3"
            species:10116 "Rattus norvegicus" [GO:0003682 "chromatin binding"
            evidence=ISO;ISS] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0006915 "apoptotic process"
            evidence=IEA] [GO:0019722 "calcium-mediated signaling"
            evidence=IDA] [GO:0034056 "estrogen response element binding"
            evidence=ISO;ISS] [GO:0042803 "protein homodimerization activity"
            evidence=ISO;ISS] [GO:0043524 "negative regulation of neuron
            apoptotic process" evidence=ISO;ISS] [GO:0045893 "positive
            regulation of transcription, DNA-dependent" evidence=ISO;IDA]
            [GO:0051219 "phosphoprotein binding" evidence=ISO]
            InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505 RGD:1311529
            GO:GO:0005634 GO:GO:0006915 GO:GO:0045893 GO:GO:0042803
            GO:GO:0019722 GO:GO:0043524 GO:GO:0006351 GO:GO:0003682
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0034056 HOVERGEN:HBG051183 eggNOG:NOG284736 OrthoDB:EOG4K0QNS
            EMBL:EU194254 IPI:IPI00371454 UniGene:Rn.41060
            Genevestigator:B7SBD2 Uniprot:B7SBD2
        Length = 577

 Score = 125 (49.1 bits), Expect = 5.1e-07, P = 5.1e-07
 Identities = 29/88 (32%), Positives = 43/88 (48%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D N P++P+SAY +F  D + + K   P N +   + K     W S+ E +K  Y +K  
Sbjct:   250 DPNEPQKPVSAYALFFRDTQAAIKGQNP-NATFGEVSKIVASMWDSLGEEQKQVYKRKTE 308

Query:    98 NKKAEYELALEAYKKQLNDNGAGVSEDS 125
               K EY  AL AY+  L    A  S ++
Sbjct:   309 AAKKEYLKALAAYRASLVSKAAAESAEA 336


>UNIPROTKB|E1BQV6 [details] [associations]
            symbol:TOX3 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003682 "chromatin binding" evidence=IEA] [GO:0034056
            "estrogen response element binding" evidence=IEA] [GO:0042803
            "protein homodimerization activity" evidence=IEA] [GO:0043524
            "negative regulation of neuron apoptotic process" evidence=IEA]
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0051219 "phosphoprotein binding" evidence=IEA]
            InterPro:IPR009071 Pfam:PF00505 GO:GO:0045893 GO:GO:0043524
            GO:GO:0003682 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0034056 GeneTree:ENSGT00560000076898
            OMA:HSLIMRS EMBL:AADN02038322 EMBL:AADN02038323 EMBL:AADN02038324
            EMBL:AADN02038325 EMBL:AADN02038326 EMBL:AADN02038327
            EMBL:AADN02038328 EMBL:AADN02038329 IPI:IPI00576205
            Ensembl:ENSGALT00000005929 ArrayExpress:E1BQV6 Uniprot:E1BQV6
        Length = 580

 Score = 125 (49.1 bits), Expect = 5.1e-07, P = 5.1e-07
 Identities = 29/88 (32%), Positives = 43/88 (48%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D N P++P+SAY +F  D + + K   P N +   + K     W S+ E +K  Y +K  
Sbjct:   256 DPNEPQKPVSAYALFFRDTQAAIKGQNP-NATFGEVSKIVASMWDSLGEEQKQVYKRKTE 314

Query:    98 NKKAEYELALEAYKKQLNDNGAGVSEDS 125
               K EY  AL AY+  L    A  S ++
Sbjct:   315 AAKKEYLKALAAYRASLVSKAAAESAEA 342


>TAIR|locus:2098413 [details] [associations]
            symbol:HMG "high mobility group" species:3702
            "Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=ISS] [GO:0005719 "nuclear euchromatin" evidence=IDA]
            [GO:0035101 "FACT complex" evidence=IDA] [GO:0010228 "vegetative to
            reproductive phase transition of meristem" evidence=IMP]
            [GO:0000394 "RNA splicing, via endonucleolytic cleavage and
            ligation" evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
            [GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006346
            "methylation-dependent chromatin silencing" evidence=RCA]
            [GO:0006366 "transcription from RNA polymerase II promoter"
            evidence=RCA] [GO:0007267 "cell-cell signaling" evidence=RCA]
            [GO:0009616 "virus induced gene silencing" evidence=RCA]
            [GO:0009855 "determination of bilateral symmetry" evidence=RCA]
            [GO:0009887 "organ morphogenesis" evidence=RCA] [GO:0010014
            "meristem initiation" evidence=RCA] [GO:0010050 "vegetative phase
            change" evidence=RCA] [GO:0010051 "xylem and phloem pattern
            formation" evidence=RCA] [GO:0010073 "meristem maintenance"
            evidence=RCA] [GO:0010267 "production of ta-siRNAs involved in RNA
            interference" evidence=RCA] [GO:0016246 "RNA interference"
            evidence=RCA] [GO:0016569 "covalent chromatin modification"
            evidence=RCA] [GO:0031047 "gene silencing by RNA" evidence=RCA]
            [GO:0035196 "production of miRNAs involved in gene silencing by
            miRNA" evidence=RCA] [GO:0048439 "flower morphogenesis"
            evidence=RCA] [GO:0048519 "negative regulation of biological
            process" evidence=RCA] InterPro:IPR009071 InterPro:IPR000969
            PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531 EMBL:CP002686
            GenomeReviews:BA000014_GR Gene3D:2.30.29.30 InterPro:IPR011993
            GO:GO:0003677 GO:GO:0006260 GO:GO:0006281 GO:GO:0003700
            GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0010228 GO:GO:0005719 GO:GO:0035101
            InterPro:IPR013719 Pfam:PF08512 eggNOG:COG5165 KO:K09272
            InterPro:IPR024954 OMA:PVEVKKG EMBL:D13491 EMBL:AP002057
            EMBL:BT002507 EMBL:AK318679 EMBL:AK221855 IPI:IPI00547320
            IPI:IPI00931095 PIR:S35511 RefSeq:NP_189515.1 UniGene:At.21931
            UniGene:At.48716 ProteinModelPortal:Q05153 SMR:Q05153 STRING:Q05153
            PaxDb:Q05153 PRIDE:Q05153 EnsemblPlants:AT3G28730.1 GeneID:822505
            KEGG:ath:AT3G28730 TAIR:At3g28730 HOGENOM:HOG000241245
            InParanoid:Q05153 PhylomeDB:Q05153 ProtClustDB:CLSN2684068
            Genevestigator:Q05153 GermOnline:AT3G28730 Uniprot:Q05153
        Length = 646

 Score = 124 (48.7 bits), Expect = 7.6e-07, P = 7.6e-07
 Identities = 31/89 (34%), Positives = 43/89 (48%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NAPKR +S +  F +  R + K+  P   +   +GK  G KW+ MS  +K PY  KA 
Sbjct:   558 DPNAPKRAMSGFMFFSQMERDNIKKEHP-GIAFGEVGKVLGDKWRQMSADDKEPYEAKAQ 616

Query:    98 NKKAEYELALEAYKKQLNDN-GAGVSEDS 125
               K  Y+  +  YK     N  +G   DS
Sbjct:   617 VDKQRYKDEISDYKNPQPMNVDSGNDSDS 645


>POMBASE|SPBC28F2.11 [details] [associations]
            symbol:SPBC28F2.11 "HMG box protein" species:4896
            "Schizosaccharomyces pombe" [GO:0003677 "DNA binding" evidence=ISM]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005794 "Golgi apparatus"
            evidence=IDA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=NAS] [GO:0043066 "negative regulation of
            apoptotic process" evidence=IGI] InterPro:IPR009071
            PomBase:SPBC28F2.11 GO:GO:0005794 GO:GO:0043066 GO:GO:0006355
            GO:GO:0003677 EMBL:CU329671 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011 HSSP:P63159
            OrthoDB:EOG4RV61X PIR:T40054 RefSeq:NP_595672.1
            ProteinModelPortal:Q9USU7 STRING:Q9USU7 EnsemblFungi:SPBC28F2.11.1
            GeneID:2540337 KEGG:spo:SPBC28F2.11 eggNOG:NOG246329
            NextBio:20801465 Uniprot:Q9USU7
        Length = 310

 Score = 119 (46.9 bits), Expect = 8.0e-07, P = 8.0e-07
 Identities = 27/74 (36%), Positives = 41/74 (55%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKS-VAAMGKAGGQKWKSMSEAEKAPYVQKA 96
             D   PKRP SAY +F ++ R   KES  +  + V  + KA  +KW S+SE ++  Y ++A
Sbjct:   113 DPAQPKRPPSAYNLFQKNQRSEIKESLGEKSNDVKEVNKAMHEKWGSLSEDDRKTYEEEA 172

Query:    97 LNKKAEYELALEAY 110
                +  YE  + AY
Sbjct:   173 SKLREAYEEEMAAY 186


>WB|WBGene00001972 [details] [associations]
            symbol:hmg-1.2 species:6239 "Caenorhabditis elegans"
            [GO:0000003 "reproduction" evidence=IMP] [GO:0040010 "positive
            regulation of growth rate" evidence=IMP] [GO:0009792 "embryo
            development ending in birth or egg hatching" evidence=IMP]
            [GO:0040018 "positive regulation of multicellular organism growth"
            evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
            evidence=IMP] [GO:0002119 "nematode larval development"
            evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
            [GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
            [GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
            [GO:0007126 "meiosis" evidence=IMP] [GO:0001708 "cell fate
            specification" evidence=IMP] [GO:0016055 "Wnt receptor signaling
            pathway" evidence=IGI] [GO:0008406 "gonad development"
            evidence=IMP] [GO:0040025 "vulval development" evidence=IMP]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0003677 "DNA binding"
            evidence=ISS] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
            GO:GO:0001708 GO:GO:0009792 GO:GO:0002009 GO:GO:0006898
            GO:GO:0040010 GO:GO:0008406 GO:GO:0016055 GO:GO:0003677
            GO:GO:0010171 GO:GO:0040018 eggNOG:COG5648 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 EMBL:FO080618
            GO:GO:0040035 GO:GO:0040025 Pfam:PF09011 EMBL:AF056577 PIR:T43009
            RefSeq:NP_001022599.1 RefSeq:NP_001022600.1 RefSeq:NP_498375.1
            UniGene:Cel.10345 ProteinModelPortal:Q09390 SMR:Q09390
            IntAct:Q09390 STRING:Q09390 PaxDb:Q09390 PRIDE:Q09390
            EnsemblMetazoa:F47D12.4a.1 EnsemblMetazoa:F47D12.4a.2 GeneID:175890
            KEGG:cel:CELE_F47D12.4 UCSC:F47D12.4a.1 CTD:175890
            WormBase:F47D12.4a WormBase:F47D12.4b WormBase:F47D12.4c
            GeneTree:ENSGT00560000076898 HOGENOM:HOG000197861 InParanoid:Q09390
            KO:K11295 OMA:GEDAMRK NextBio:890170 Uniprot:Q09390
        Length = 235

 Score = 116 (45.9 bits), Expect = 8.7e-07, P = 8.7e-07
 Identities = 27/77 (35%), Positives = 40/77 (51%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D +APKR LSA+F + +D R   +   PD K V  + +  G+ WK + +  K  Y QKA 
Sbjct:   131 DPHAPKRALSAFFFYSQDKRPEIQAGHPDWK-VGQVAQELGKMWKLVPQETKDMYEQKAQ 189

Query:    98 NKKAEYELALEAYKKQL 114
               K  Y   +  YK ++
Sbjct:   190 ADKDRYADEMRNYKAEM 206


>UNIPROTKB|F1N1P2 [details] [associations]
            symbol:F1N1P2 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
            PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            Pfam:PF09011 GeneTree:ENSGT00560000076717 EMBL:DAAA02056400
            IPI:IPI00904552 Ensembl:ENSBTAT00000020361 Uniprot:F1N1P2
        Length = 199

 Score = 113 (44.8 bits), Expect = 1.1e-06, P = 1.1e-06
 Identities = 32/116 (27%), Positives = 50/116 (43%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D  APKR  S   +F  +F    K + P   S+  + K  G+ W ++S++EK PY+ KA 
Sbjct:    88 DPKAPKRLPSGCLLFCSEFHPKIKSTHP-GISIRDVAKKLGEMWNNLSDSEKQPYINKAA 146

Query:    98 NKKAEYELALEAYKKQLNDNGAGVSEDSWKXXXXXXXXXXXXXEINDEAEQEFSSQ 153
                      L+ Y+K   D+ +    D  K             +  DE E+E S +
Sbjct:   147 K--------LKKYEKDAADHKSRGKFDGTKGPAKVAGKMVEEEDKEDEEEEEQSQE 194


>UNIPROTKB|Q5T7C6 [details] [associations]
            symbol:HMGB1 "High mobility group protein B1" species:9606
            "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
            PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            Pfam:PF09011 HOGENOM:HOG000197861 HOVERGEN:HBG009000 EMBL:AL353648
            UniGene:Hs.434102 UniGene:Hs.593339 UniGene:Hs.596078
            UniGene:Hs.741195 HGNC:HGNC:4983 ChiTaRS:HMGB1 EMBL:AL138681
            IPI:IPI00645948 SMR:Q5T7C6 MINT:MINT-1373108
            Ensembl:ENST00000426225 Uniprot:Q5T7C6
        Length = 162

 Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 23/60 (38%), Positives = 34/60 (56%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NAPKRP SA+F+F  ++R   K   P   S+  + K  G+ W + +  +K PY +K L
Sbjct:    91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPY-EKIL 148

 Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
 Identities = 22/74 (29%), Positives = 38/74 (51%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPD-NKSVAAMGKAGGQKWKSMSEAEKAPYVQKA 96
             D   P+  +S+Y  F++  R+  K+  PD + + +   K   ++WK+MS  EK  +   A
Sbjct:     5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64

Query:    97 LNKKAEYELALEAY 110
                KA YE  ++ Y
Sbjct:    65 KADKARYEREMKTY 78


>UNIPROTKB|Q28EW4 [details] [associations]
            symbol:sox13 "Transcription factor Sox-13" species:8364
            "Xenopus (Silurana) tropicalis" [GO:0005634 "nucleus" evidence=ISS]
            [GO:0043565 "sequence-specific DNA binding" evidence=ISS]
            InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634 GO:GO:0006355
            GO:GO:0043565 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00690000101789
            CTD:9580 eggNOG:NOG275089 KO:K09269 HOGENOM:HOG000056455
            EMBL:CR762311 RefSeq:NP_001017004.1 UniGene:Str.11026
            ProteinModelPortal:Q28EW4 SMR:Q28EW4 Ensembl:ENSXETT00000064129
            GeneID:549758 KEGG:xtr:549758 Xenbase:XB-GENE-481889 Bgee:Q28EW4
            Uniprot:Q28EW4
        Length = 566

 Score = 120 (47.3 bits), Expect = 1.7e-06, P = 1.7e-06
 Identities = 24/68 (35%), Positives = 42/68 (61%)

Query:    43 KRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAE 102
             KRP++A+ ++ +D R+   ++FPD  + +++ K  G +WKSMS AEK PY ++      +
Sbjct:   379 KRPMNAFMVWAKDERRKILQAFPDMHN-SSISKILGSRWKSMSNAEKQPYYEEQARLSRQ 437

Query:   103 YELALEAY 110
             +   LE Y
Sbjct:   438 H---LERY 442


>UNIPROTKB|B4DPY8 [details] [associations]
            symbol:TOX4 "cDNA FLJ54372, highly similar to Epidermal
            Langerhans cell protein LCP1" species:9606 "Homo sapiens"
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            EMBL:AL161747 EMBL:AE000658 HOVERGEN:HBG051013 UniGene:Hs.555910
            HGNC:HGNC:20161 ChiTaRS:TOX4 EMBL:AK298555 IPI:IPI00879111
            SMR:B4DPY8 STRING:B4DPY8 Ensembl:ENST00000448790 UCSC:uc010tlu.2
            Uniprot:B4DPY8
        Length = 598

 Score = 120 (47.3 bits), Expect = 1.9e-06, P = 1.9e-06
 Identities = 27/74 (36%), Positives = 38/74 (51%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D N P++P+SAY +F  D + + K   P N +   + K     W S+ E +K  Y +K  
Sbjct:   196 DPNEPQKPVSAYALFFRDTQAAIKGQNP-NATFGEVSKIVASMWDSLGEEQKQVYKRKTE 254

Query:    98 NKKAEYELALEAYK 111
               K EY  AL AYK
Sbjct:   255 AAKKEYLKALAAYK 268


>UNIPROTKB|Q0P5K4 [details] [associations]
            symbol:TOX4 "TOX high mobility group box family member 4"
            species:9913 "Bos taurus" [GO:0072357 "PTW/PP1 phosphatase complex"
            evidence=ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0000785
            "chromatin" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
            GO:GO:0000785 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GeneTree:ENSGT00560000076898 GO:GO:0072357
            HOGENOM:HOG000230949 eggNOG:NOG284736 EMBL:BC119929 IPI:IPI00689806
            RefSeq:NP_001069175.1 UniGene:Bt.51979 ProteinModelPortal:Q0P5K4
            SMR:Q0P5K4 Ensembl:ENSBTAT00000020149 GeneID:515314 KEGG:bta:515314
            CTD:9878 HOVERGEN:HBG051013 InParanoid:Q0P5K4 OMA:PPTLKMQ
            OrthoDB:EOG4JT05P NextBio:20871764 ArrayExpress:Q0P5K4
            Uniprot:Q0P5K4
        Length = 619

 Score = 120 (47.3 bits), Expect = 1.9e-06, P = 1.9e-06
 Identities = 27/74 (36%), Positives = 38/74 (51%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D N P++P+SAY +F  D + + K   P N +   + K     W S+ E +K  Y +K  
Sbjct:   219 DPNEPQKPVSAYALFFRDTQAAIKGQNP-NATFGEVSKIVASMWDSLGEEQKQVYKRKTE 277

Query:    98 NKKAEYELALEAYK 111
               K EY  AL AYK
Sbjct:   278 AAKKEYLKALAAYK 291


>MGI|MGI:1915389 [details] [associations]
            symbol:Tox4 "TOX high mobility group box family member 4"
            species:10090 "Mus musculus" [GO:0000785 "chromatin" evidence=ISO]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
            [GO:0072357 "PTW/PP1 phosphatase complex" evidence=ISO]
            InterPro:IPR009071 MGI:MGI:1915389 Pfam:PF00505 GO:GO:0005634
            GO:GO:0003677 GO:GO:0000785 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00560000076898
            GO:GO:0072357 eggNOG:NOG284736 CTD:9878 HOVERGEN:HBG051013
            OMA:PPTLKMQ OrthoDB:EOG4JT05P ChiTaRS:TOX4 EMBL:AF228408
            EMBL:AK019980 EMBL:AK088144 EMBL:AK147023 EMBL:AK147834
            EMBL:BC050091 IPI:IPI00121251 RefSeq:NP_075923.2 UniGene:Mm.246237
            ProteinModelPortal:Q8BU11 SMR:Q8BU11 IntAct:Q8BU11
            PhosphoSite:Q8BU11 PaxDb:Q8BU11 PRIDE:Q8BU11
            Ensembl:ENSMUST00000022766 GeneID:268741 KEGG:mmu:268741
            InParanoid:Q3UGN7 NextBio:392465 Bgee:Q8BU11 CleanEx:MM_TOX4
            Genevestigator:Q8BU11 GermOnline:ENSMUSG00000016831 Uniprot:Q8BU11
        Length = 619

 Score = 120 (47.3 bits), Expect = 1.9e-06, P = 1.9e-06
 Identities = 27/74 (36%), Positives = 38/74 (51%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D N P++P+SAY +F  D + + K   P N +   + K     W S+ E +K  Y +K  
Sbjct:   219 DPNEPQKPVSAYALFFRDTQAAIKGQNP-NATFGEVSKIVASMWDSLGEEQKQVYKRKTE 277

Query:    98 NKKAEYELALEAYK 111
               K EY  AL AYK
Sbjct:   278 AAKKEYLKALAAYK 291


>RGD|708449 [details] [associations]
            symbol:Tox4 "TOX high mobility group box family member 4"
            species:10116 "Rattus norvegicus" [GO:0000785 "chromatin"
            evidence=IEA;ISO] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0072357 "PTW/PP1
            phosphatase complex" evidence=IEA;ISO;ISS] [GO:0005730 "nucleolus"
            evidence=ISO] InterPro:IPR009071 Pfam:PF00505 RGD:708449
            GO:GO:0005634 GO:GO:0003677 GO:GO:0000785 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0072357
            HOGENOM:HOG000230949 eggNOG:NOG284736 HOVERGEN:HBG051013
            OrthoDB:EOG4JT05P EMBL:AF267197 IPI:IPI00201166 UniGene:Rn.22195
            ProteinModelPortal:Q99PM1 SMR:Q99PM1 PhosphoSite:Q99PM1
            PRIDE:Q99PM1 UCSC:RGD:708449 InParanoid:Q99PM1 ArrayExpress:Q99PM1
            Genevestigator:Q99PM1 GermOnline:ENSRNOG00000012844 Uniprot:Q99PM1
        Length = 619

 Score = 120 (47.3 bits), Expect = 1.9e-06, P = 1.9e-06
 Identities = 27/74 (36%), Positives = 38/74 (51%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D N P++P+SAY +F  D + + K   P N +   + K     W S+ E +K  Y +K  
Sbjct:   219 DPNEPQKPVSAYALFFRDTQAAIKGQNP-NATFGEVSKIVASMWDSLGEEQKQVYKRKTE 277

Query:    98 NKKAEYELALEAYK 111
               K EY  AL AYK
Sbjct:   278 AAKKEYLKALAAYK 291


>UNIPROTKB|I3LAV9 [details] [associations]
            symbol:TOX4 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0072357 "PTW/PP1 phosphatase complex" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0000785 "chromatin"
            evidence=IEA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
            GO:GO:0000785 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GeneTree:ENSGT00560000076898 GO:GO:0072357
            OMA:PPTLKMQ EMBL:CU695044 RefSeq:XP_001929153.1 UniGene:Ssc.97365
            Ensembl:ENSSSCT00000027379 GeneID:100152681 KEGG:ssc:100152681
            Uniprot:I3LAV9
        Length = 620

 Score = 120 (47.3 bits), Expect = 1.9e-06, P = 1.9e-06
 Identities = 27/74 (36%), Positives = 38/74 (51%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D N P++P+SAY +F  D + + K   P N +   + K     W S+ E +K  Y +K  
Sbjct:   219 DPNEPQKPVSAYALFFRDTQAAIKGQNP-NATFGEVSKIVASMWDSLGEEQKQVYKRKTE 277

Query:    98 NKKAEYELALEAYK 111
               K EY  AL AYK
Sbjct:   278 AAKKEYLKALAAYK 291


>UNIPROTKB|O94842 [details] [associations]
            symbol:TOX4 "TOX high mobility group box family member 4"
            species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0000785 "chromatin"
            evidence=IDA] [GO:0072357 "PTW/PP1 phosphatase complex"
            evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
            "nucleolus" evidence=IDA] InterPro:IPR009071 Pfam:PF00505
            GO:GO:0005634 GO:GO:0003677 GO:GO:0000785 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0072357
            HOGENOM:HOG000230949 eggNOG:NOG284736 CTD:9878 HOVERGEN:HBG051013
            OMA:PPTLKMQ OrthoDB:EOG4JT05P EMBL:AB018280 EMBL:BC013689
            IPI:IPI00006586 RefSeq:NP_055643.1 UniGene:Hs.555910
            ProteinModelPortal:O94842 SMR:O94842 IntAct:O94842
            MINT:MINT-1193640 STRING:O94842 PhosphoSite:O94842 PaxDb:O94842
            PeptideAtlas:O94842 PRIDE:O94842 DNASU:9878 Ensembl:ENST00000262709
            Ensembl:ENST00000405508 GeneID:9878 KEGG:hsa:9878 UCSC:uc001way.3
            GeneCards:GC14P021944 HGNC:HGNC:20161 HPA:HPA017880 HPA:HPA027551
            MIM:614032 neXtProt:NX_O94842 PharmGKB:PA162406753
            InParanoid:O94842 PhylomeDB:O94842 ChiTaRS:TOX4 GenomeRNAi:9878
            NextBio:37229 ArrayExpress:O94842 Bgee:O94842 CleanEx:HS_TOX4
            Genevestigator:O94842 GermOnline:ENSG00000092203 Uniprot:O94842
        Length = 621

 Score = 120 (47.3 bits), Expect = 1.9e-06, P = 1.9e-06
 Identities = 27/74 (36%), Positives = 38/74 (51%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D N P++P+SAY +F  D + + K   P N +   + K     W S+ E +K  Y +K  
Sbjct:   219 DPNEPQKPVSAYALFFRDTQAAIKGQNP-NATFGEVSKIVASMWDSLGEEQKQVYKRKTE 277

Query:    98 NKKAEYELALEAYK 111
               K EY  AL AYK
Sbjct:   278 AAKKEYLKALAAYK 291


>UNIPROTKB|Q5R6A9 [details] [associations]
            symbol:TOX4 "TOX high mobility group box family member 4"
            species:9601 "Pongo abelii" [GO:0072357 "PTW/PP1 phosphatase
            complex" evidence=ISS] InterPro:IPR009071 Pfam:PF00505
            GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0072357 HOGENOM:HOG000230949
            HSSP:Q66JW3 CTD:9878 HOVERGEN:HBG051013 OrthoDB:EOG4JT05P
            EMBL:CR860582 EMBL:CR861113 RefSeq:NP_001126876.1
            RefSeq:NP_001128875.1 UniGene:Pab.18544 UniGene:Pab.19683
            GeneID:100173889 GeneID:100189804 KEGG:pon:100173889
            KEGG:pon:100189804 Uniprot:Q5R6A9
        Length = 621

 Score = 120 (47.3 bits), Expect = 1.9e-06, P = 1.9e-06
 Identities = 27/74 (36%), Positives = 38/74 (51%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D N P++P+SAY +F  D + + K   P N +   + K     W S+ E +K  Y +K  
Sbjct:   219 DPNEPQKPVSAYALFFRDTQAAIKGQNP-NATFGEVSKIVASMWDSLGEEQKQVYKRKTE 277

Query:    98 NKKAEYELALEAYK 111
               K EY  AL AYK
Sbjct:   278 AAKKEYLKALAAYK 291


>FB|FBgn0011764 [details] [associations]
            symbol:Dsp1 "Dorsal switch protein 1" species:7227
            "Drosophila melanogaster" [GO:0005634 "nucleus" evidence=IC;IDA]
            [GO:0000122 "negative regulation of transcription from RNA
            polymerase II promoter" evidence=IMP;IDA] [GO:0043388 "positive
            regulation of DNA binding" evidence=IDA] [GO:0003677 "DNA binding"
            evidence=IDA] [GO:0017025 "TBP-class protein binding" evidence=IPI]
            [GO:0017055 "negative regulation of RNA polymerase II
            transcriptional preinitiation complex assembly" evidence=IDA]
            [GO:0032502 "developmental process" evidence=IMP] [GO:0008134
            "transcription factor binding" evidence=IPI] [GO:0006338 "chromatin
            remodeling" evidence=IMP] [GO:0007379 "segment specification"
            evidence=IMP] [GO:0008301 "DNA binding, bending" evidence=IDA]
            [GO:0035218 "leg disc development" evidence=IMP] [GO:0008348
            "negative regulation of antimicrobial humoral response"
            evidence=IGI;IMP] [GO:0005700 "polytene chromosome" evidence=IDA]
            InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
            GO:GO:0005634 EMBL:AE014298 GO:GO:0006338 eggNOG:COG5648
            GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0003697 GO:GO:0007379 GO:GO:0005700
            GO:GO:0043388 Pfam:PF09011 GO:GO:0006268
            GeneTree:ENSGT00560000076898 EMBL:U13881 EMBL:X89811 EMBL:X81456
            EMBL:AY060841 PIR:JC6179 PIR:S50068 RefSeq:NP_542446.2
            RefSeq:NP_727959.2 RefSeq:NP_727960.1 RefSeq:NP_727961.1
            RefSeq:NP_996485.1 UniGene:Dm.2879 ProteinModelPortal:Q24537
            SMR:Q24537 DIP:DIP-29511N MINT:MINT-344326 STRING:Q24537
            PaxDb:Q24537 PRIDE:Q24537 EnsemblMetazoa:FBtr0089263 GeneID:117294
            KEGG:dme:Dmel_CG12223 CTD:117294 FlyBase:FBgn0011764
            InParanoid:Q24537 KO:K10802 OrthoDB:EOG480GCJ ChiTaRS:Dsp1
            GenomeRNAi:117294 NextBio:841819 Bgee:Q24537 GermOnline:CG12223
            GO:GO:0035218 GO:GO:0008348 GO:GO:0017055 Uniprot:Q24537
        Length = 393

 Score = 117 (46.2 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 29/74 (39%), Positives = 35/74 (47%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NAPKR LSA+F F  D R   K   P+   V  + K  G+KW  +    K  Y   A 
Sbjct:   267 DPNAPKRSLSAFFWFCNDERNKVKALNPEF-GVGDIAKELGRKWSDVDPEVKQKYESMAE 325

Query:    98 NKKAEYELALEAYK 111
               KA YE  +  YK
Sbjct:   326 RDKARYEREMTEYK 339


>TAIR|locus:505006631 [details] [associations]
            symbol:AT5G23405 "AT5G23405" species:3702 "Arabidopsis
            thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISM] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=ISS] [GO:0006333 "chromatin assembly or
            disassembly" evidence=RCA] InterPro:IPR009071 Pfam:PF00505
            GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            EMBL:AB018110 EMBL:AY052244 EMBL:BT020349 IPI:IPI00546033
            IPI:IPI00547115 RefSeq:NP_568430.2 RefSeq:NP_851063.1
            UniGene:At.26423 ProteinModelPortal:Q941D1 SMR:Q941D1 IntAct:Q941D1
            STRING:Q941D1 EnsemblPlants:AT5G23405.1 GeneID:832406
            KEGG:ath:AT5G23405 TAIR:At5g23405 eggNOG:NOG291653
            HOGENOM:HOG000242532 InParanoid:Q941D1 OMA:RMHICYA PhylomeDB:Q941D1
            ProtClustDB:CLSN2680197 Genevestigator:Q941D1 Uniprot:Q941D1
        Length = 149

 Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 26/72 (36%), Positives = 41/72 (56%)

Query:    46 LSAYFIFMEDFRKSFKESFPDNKSVAAMG-KAGGQKWKSMSEAEKAPYVQKALNKKAEYE 104
             L+ + +FM  FRKSF+  +  N ++   G K G + WKSM+E EK  Y+ KA +++ E E
Sbjct:    67 LTDFAVFMNHFRKSFRTDY--NGALVKEGSKIGWEMWKSMTEDEKKDYLDKAADEEDEDE 124

Query:   105 LALEAYKKQLND 116
               +E      +D
Sbjct:   125 DTVEEQADDSDD 136


>FB|FBgn0038978 [details] [associations]
            symbol:CG7045 species:7227 "Drosophila melanogaster"
            [GO:0005634 "nucleus" evidence=ISS] [GO:0003677 "DNA binding"
            evidence=ISS] [GO:0000785 "chromatin" evidence=ISS]
            InterPro:IPR009071 Pfam:PF00505 EMBL:AE014297 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GeneTree:ENSGT00700000104547 HSSP:Q05783 OrthoDB:EOG4MCVGR
            RefSeq:NP_651055.1 UniGene:Dm.1280 ProteinModelPortal:Q9VCZ5
            SMR:Q9VCZ5 MINT:MINT-1649734 STRING:Q9VCZ5 PRIDE:Q9VCZ5
            EnsemblMetazoa:FBtr0084258 GeneID:42650 KEGG:dme:Dmel_CG7045
            UCSC:CG7045-RA FlyBase:FBgn0038978 InParanoid:Q9VCZ5
            PhylomeDB:Q9VCZ5 GenomeRNAi:42650 NextBio:829878
            ArrayExpress:Q9VCZ5 Bgee:Q9VCZ5 Uniprot:Q9VCZ5
        Length = 126

 Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
 Identities = 23/70 (32%), Positives = 40/70 (57%)

Query:    42 PKRPLSAYFIFMEDF-RKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKK 100
             PK+P+SA+ ++M    RK  K   PD  SV  +   GG+ W++M++ +K  + + A    
Sbjct:     8 PKKPMSAFMLWMNSTGRKHIKAEHPDF-SVQEVSVKGGEMWRAMADEDKIVWQESATTAM 66

Query:   101 AEYELALEAY 110
             AEY+  L+ +
Sbjct:    67 AEYKEKLKQW 76


>FB|FBgn0038979 [details] [associations]
            symbol:CG7046 species:7227 "Drosophila melanogaster"
            [GO:0000785 "chromatin" evidence=ISS] [GO:0003677 "DNA binding"
            evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
            InterPro:IPR009071 Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 FlyBase:FBgn0038979 EMBL:AY070828
            HSSP:Q05783 ProteinModelPortal:Q8T957 SMR:Q8T957 STRING:Q8T957
            PRIDE:Q8T957 eggNOG:NOG253857 InParanoid:Q8T957 OrthoDB:EOG4MCVGR
            ArrayExpress:Q8T957 Bgee:Q8T957 Uniprot:Q8T957
        Length = 138

 Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
 Identities = 23/70 (32%), Positives = 40/70 (57%)

Query:    42 PKRPLSAYFIFMEDF-RKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKK 100
             PK+P+SA+ ++M    RK+ +   PD  SV  +   GG+ W++M++  K  + + A    
Sbjct:     8 PKKPMSAFMLWMNSTGRKNIRAEHPDF-SVQEVSVKGGEMWRAMADEHKIVWQESASKAM 66

Query:   101 AEYELALEAY 110
             AEY+  LE +
Sbjct:    67 AEYKEKLEKW 76


>UNIPROTKB|F1M1H9 [details] [associations]
            symbol:F1M1H9 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
            InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
            GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 Pfam:PF09011 IPI:IPI00949462
            Ensembl:ENSRNOT00000052187 Uniprot:F1M1H9
        Length = 179

 Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
 Identities = 23/74 (31%), Positives = 38/74 (51%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D +AP+RP  A+F+F  ++    K   P   S+  + K  G+ W + +  +K P  +KA 
Sbjct:    92 DPDAPRRPPLAFFLFCSEYHPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPCEKKAA 150

Query:    98 NKKAEYELALEAYK 111
               K +YE    AY+
Sbjct:   151 KLKEKYEKDNAAYR 164


>RGD|620682 [details] [associations]
            symbol:Tfam "transcription factor A, mitochondrial" species:10116
            "Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IDA]
            [GO:0003682 "chromatin binding" evidence=ISO;ISS] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=ISO;IMP;TAS] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0005739 "mitochondrion" evidence=ISO;IDA] [GO:0006264
            "mitochondrial DNA replication" evidence=TAS] [GO:0006390
            "transcription from mitochondrial promoter" evidence=ISO;IMP;TAS]
            [GO:0006391 "transcription initiation from mitochondrial promoter"
            evidence=ISO;ISS] [GO:0008301 "DNA binding, bending"
            evidence=ISO;ISS] [GO:0031072 "heat shock protein binding"
            evidence=IPI] [GO:0033108 "mitochondrial respiratory chain complex
            assembly" evidence=IEA;ISO] [GO:0042645 "mitochondrial nucleoid"
            evidence=ISO;ISS] [GO:0045893 "positive regulation of
            transcription, DNA-dependent" evidence=ISO;ISS] [GO:0070363
            "mitochondrial light strand promoter sense binding"
            evidence=ISO;ISS] InterPro:IPR009071 Pfam:PF00505 RGD:620682
            GO:GO:0005634 GO:GO:0045893 GO:GO:0003700 GO:GO:0003682
            GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0042645 GO:GO:0033108 Pfam:PF09011
            GO:GO:0006264 GO:GO:0006391 CTD:7019 eggNOG:NOG297801
            HOGENOM:HOG000139423 HOVERGEN:HBG106674 KO:K11830 GO:GO:0070363
            OMA:YENEMKS OrthoDB:EOG4KKZ4D GeneTree:ENSGT00440000039001
            EMBL:AB014089 EMBL:AJ312746 EMBL:AF377866 EMBL:BC062022
            IPI:IPI00327334 RefSeq:NP_112616.1 UniGene:Rn.18266
            ProteinModelPortal:Q91ZW1 STRING:Q91ZW1 PRIDE:Q91ZW1
            Ensembl:ENSRNOT00000000753 GeneID:83474 KEGG:rno:83474
            UCSC:RGD:620682 InParanoid:Q91ZW1 NextBio:615889
            ArrayExpress:Q91ZW1 Genevestigator:Q91ZW1
            GermOnline:ENSRNOG00000000613 Uniprot:Q91ZW1
        Length = 244

 Score = 112 (44.5 bits), Expect = 2.8e-06, P = 2.8e-06
 Identities = 27/79 (34%), Positives = 45/79 (56%)

Query:    42 PKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAG--GQKWKSMSEAEKAPYVQKALNK 99
             PKRP SAY I++        ESF + K  +A GK     Q WK++S  EK  Y+Q A + 
Sbjct:   154 PKRPRSAYNIYVS-------ESFQEAKDESAQGKLKLVNQAWKNLSHDEKQAYIQLAKDD 206

Query:   100 KAEYELALEAYKKQLNDNG 118
             +  Y+  ++++++Q+ + G
Sbjct:   207 RIRYDNEMKSWEEQMAEVG 225

 Score = 102 (41.0 bits), Expect = 3.6e-05, P = 3.6e-05
 Identities = 25/75 (33%), Positives = 36/75 (48%)

Query:    40 NAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNK 99
             N PK+P+S+Y  F  +    FK   PD K    + K     W+ + EAEK  Y      +
Sbjct:    47 NYPKKPMSSYLRFSTEQLPKFKAKHPDAKVSELIRKIAAM-WRELPEAEKKVYEADFKAE 105

Query:   100 KAEYELALEAYKKQL 114
                Y+ A+  YK+QL
Sbjct:   106 WKVYKEAVSKYKEQL 120


>UNIPROTKB|P40649 [details] [associations]
            symbol:sox13 "Transcription factor Sox-13" species:8355
            "Xenopus laevis" [GO:0005634 "nucleus" evidence=ISS] [GO:0043565
            "sequence-specific DNA binding" evidence=ISS] InterPro:IPR009071
            Pfam:PF00505 GO:GO:0005634 GO:GO:0006355 GO:GO:0043565
            GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 CTD:9580 HOVERGEN:HBG003915 KO:K09269 EMBL:D50552
            EMBL:BC068647 EMBL:X65655 PIR:S71466 RefSeq:NP_001081238.1
            UniGene:Xl.13036 ProteinModelPortal:P40649 SMR:P40649 GeneID:397727
            KEGG:xla:397727 Xenbase:XB-GENE-865496 Uniprot:P40649
        Length = 567

 Score = 117 (46.2 bits), Expect = 3.6e-06, P = 3.6e-06
 Identities = 24/71 (33%), Positives = 42/71 (59%)

Query:    40 NAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNK 99
             N  KRP++A+ ++ +D R+   ++FPD  + +++ K  G +WKSMS  EK PY ++    
Sbjct:   390 NHIKRPMNAFMVWAKDERRKILQAFPDMHN-SSISKILGSRWKSMSNGEKQPYYEEQARL 448

Query:   100 KAEYELALEAY 110
               ++   LE Y
Sbjct:   449 SRQH---LERY 456


>UNIPROTKB|F1S992 [details] [associations]
            symbol:SOX-6 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0007275 "multicellular organismal development"
            evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] InterPro:IPR009071 InterPro:IPR027153 Pfam:PF00505
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GeneTree:ENSGT00690000101789 PANTHER:PTHR10270:SF89 EMBL:CU462935
            EMBL:CU576535 Ensembl:ENSSSCT00000014619 ArrayExpress:F1S992
            Uniprot:F1S992
        Length = 247

 Score = 111 (44.1 bits), Expect = 3.7e-06, P = 3.7e-06
 Identities = 20/53 (37%), Positives = 35/53 (66%)

Query:    43 KRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQK 95
             KRP++A+ ++ +D R+   ++FPD  + + + K  G +WKSMS  EK PY ++
Sbjct:    41 KRPMNAFMVWAKDERRKILQAFPDMHN-SNISKILGSRWKSMSNQEKQPYYEE 92


>UNIPROTKB|B3DLD3 [details] [associations]
            symbol:sox18 "Transcription factor Sox-18" species:8364
            "Xenopus (Silurana) tropicalis" [GO:0005634 "nucleus" evidence=ISS]
            [GO:0007507 "heart development" evidence=ISS] [GO:0030178 "negative
            regulation of Wnt receptor signaling pathway" evidence=ISS]
            [GO:0043565 "sequence-specific DNA binding" evidence=ISS]
            InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634 GO:GO:0007507
            GO:GO:0006355 GO:GO:0043565 GO:GO:0006351 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0030178
            InterPro:IPR021934 Pfam:PF12067 PROSITE:PS51516 KO:K09270 CTD:54345
            EMBL:BC167402 RefSeq:NP_001123409.1 UniGene:Str.78926
            GeneID:100170185 KEGG:xtr:100170185 Xenbase:XB-GENE-483233
            Uniprot:B3DLD3
        Length = 362

 Score = 114 (45.2 bits), Expect = 3.8e-06, P = 3.8e-06
 Identities = 21/61 (34%), Positives = 39/61 (63%)

Query:    43 KRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAE 102
             +RP++A+ ++ +D RK   +  PD  + A + K  GQ WK++S AEK P+V++A   + +
Sbjct:    69 RRPMNAFMVWAKDERKRLAQQNPDLHN-AVLSKMLGQSWKNLSSAEKRPFVEEAERLRVQ 127

Query:   103 Y 103
             +
Sbjct:   128 H 128


>RGD|1594733 [details] [associations]
            symbol:LOC690521 "similar to High mobility group protein 1
            (HMG-1) (High mobility group protein B1) (Amphoterin)
            (Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
            [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] REFSEQ:XM_001074673 Ncbi:XP_001074673
        Length = 213

 Score = 109 (43.4 bits), Expect = 4.0e-06, P = 4.0e-06
 Identities = 36/116 (31%), Positives = 52/116 (44%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NAPKRP SA F+F  ++R   K   P   S+  + K  G+ W + +  +K P  + A 
Sbjct:    91 DPNAPKRPPSA-FLFCSEYRPKIKGEHPA-LSIGDVTKKLGEVWTNTASDDKQPCEKMAA 148

Query:    98 NKKAEYELALEAYKKQLNDNGA--GV--SEDSWKXXXXXXXXXXXXXEINDEAEQE 149
               K +YE    AY+ +   + A  GV  +E S K             E  +E E E
Sbjct:   149 KLKEKYEKDTAAYRAKGKPDAAKKGVVKAERSKKKKEEEDDEEDEDDEEEEEEEDE 204

 Score = 106 (42.4 bits), Expect = 8.9e-06, P = 8.9e-06
 Identities = 22/74 (29%), Positives = 38/74 (51%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPD-NKSVAAMGKAGGQKWKSMSEAEKAPYVQKA 96
             D   P+  +S+Y  F++  R+  K+  PD + + +   K   ++WK+MS  EK  +   A
Sbjct:     5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKAMSAKEKGKFEDMA 64

Query:    97 LNKKAEYELALEAY 110
                KA YE  ++ Y
Sbjct:    65 KADKARYEREMKTY 78


>FB|FBgn0026582 [details] [associations]
            symbol:CG9418 species:7227 "Drosophila melanogaster"
            [GO:0003677 "DNA binding" evidence=ISS] InterPro:IPR009071
            Pfam:PF00505 EMBL:AE013599 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00700000104521
            eggNOG:NOG241877 HSSP:P11632 EMBL:AY058722 RefSeq:NP_611553.1
            UniGene:Dm.715 SMR:Q9W2K8 DIP:DIP-21305N IntAct:Q9W2K8
            MINT:MINT-855426 EnsemblMetazoa:FBtr0071573 GeneID:37407
            KEGG:dme:Dmel_CG9418 UCSC:CG9418-RA FlyBase:FBgn0026582
            InParanoid:Q9W2K8 OMA:NRSTENE OrthoDB:EOG47M0DS GenomeRNAi:37407
            NextBio:803476 Uniprot:Q9W2K8
        Length = 376

 Score = 114 (45.2 bits), Expect = 4.1e-06, P = 4.1e-06
 Identities = 23/75 (30%), Positives = 39/75 (52%)

Query:    39 SNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALN 98
             + APK PL+ Y  FM D R+  +   P   ++    +  G++W  + E  K PY++ A  
Sbjct:    73 AGAPKMPLNGYVRFMNDRREELRREQPQRTALEHT-RIIGEEWHQLPEERKLPYIEAAAK 131

Query:    99 KKAEYELALEAYKKQ 113
              KA Y+  L+ + K+
Sbjct:   132 DKAIYQEQLQMFLKE 146


>UNIPROTKB|Q5T7C0 [details] [associations]
            symbol:HMGB1 "High mobility group protein B1" species:9606
            "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0001654
            "eye development" evidence=IEA] [GO:0005125 "cytokine activity"
            evidence=IEA] [GO:0005615 "extracellular space" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0010858 "calcium-dependent protein kinase
            regulator activity" evidence=IEA] [GO:0030295 "protein kinase
            activator activity" evidence=IEA] [GO:0030324 "lung development"
            evidence=IEA] [GO:0043005 "neuron projection" evidence=IEA]
            [GO:0045639 "positive regulation of myeloid cell differentiation"
            evidence=IEA] [GO:0045819 "positive regulation of glycogen
            catabolic process" evidence=IEA] [GO:0045944 "positive regulation
            of transcription from RNA polymerase II promoter" evidence=IEA]
            [GO:0051384 "response to glucocorticoid stimulus" evidence=IEA]
            [GO:2000426 "negative regulation of apoptotic cell clearance"
            evidence=IEA] InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353
            GO:GO:0005634 GO:GO:0005737 GO:GO:0005615 GO:GO:0003677
            GO:GO:0030324 GO:GO:0045944 GO:GO:0051384 GO:GO:0043005
            GO:GO:0045860 GO:GO:0030295 eggNOG:COG5648 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0045819
            GO:GO:0001654 Pfam:PF09011 GO:GO:0045639 EMBL:AL353648
            UniGene:Hs.434102 UniGene:Hs.593339 UniGene:Hs.596078
            UniGene:Hs.741195 HGNC:HGNC:4983 ChiTaRS:HMGB1 GO:GO:0010858
            GO:GO:2000426 EMBL:AL138681 IPI:IPI00643746 SMR:Q5T7C0
            Ensembl:ENST00000398908 Uniprot:Q5T7C0
        Length = 97

 Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
 Identities = 22/74 (29%), Positives = 38/74 (51%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPD-NKSVAAMGKAGGQKWKSMSEAEKAPYVQKA 96
             D   P+  +S+Y  F++  R+  K+  PD + + +   K   ++WK+MS  EK  +   A
Sbjct:     5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64

Query:    97 LNKKAEYELALEAY 110
                KA YE  ++ Y
Sbjct:    65 KADKARYEREMKTY 78


>UNIPROTKB|D4A2L7 [details] [associations]
            symbol:D4A2L7 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
            InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
            GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 Pfam:PF09011 IPI:IPI00948102
            Ensembl:ENSRNOT00000030194 ArrayExpress:D4A2L7 Uniprot:D4A2L7
        Length = 135

 Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
 Identities = 22/74 (29%), Positives = 38/74 (51%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPD-NKSVAAMGKAGGQKWKSMSEAEKAPYVQKA 96
             D   P+  +S+Y  F++  R+  K+  PD + + +   K   ++WK+MS  EK  +   A
Sbjct:     5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64

Query:    97 LNKKAEYELALEAY 110
                KA YE  ++ Y
Sbjct:    65 KADKARYEREMKTY 78


>RGD|735184 [details] [associations]
            symbol:Tox2 "TOX high mobility group box family member 2"
            species:10116 "Rattus norvegicus" [GO:0001085 "RNA polymerase II
            transcription factor binding" evidence=IPI] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0008585 "female gonad development" evidence=IEP] [GO:0034698
            "response to gonadotropin stimulus" evidence=IEP] [GO:0045944
            "positive regulation of transcription from RNA polymerase II
            promoter" evidence=IDA] InterPro:IPR009071 Pfam:PF00505 RGD:735184
            GO:GO:0005634 GO:GO:0008585 GO:GO:0034698 GO:GO:0003677
            GO:GO:0045944 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 CTD:84969 eggNOG:NOG291143
            HOGENOM:HOG000230949 HOVERGEN:HBG051183 EMBL:AB096685
            IPI:IPI00400737 RefSeq:NP_955424.2 UniGene:Rn.129021
            ProteinModelPortal:Q76IQ7 SMR:Q76IQ7 PRIDE:Q76IQ7 GeneID:311615
            KEGG:rno:311615 UCSC:RGD:735184 InParanoid:Q76IQ7 OrthoDB:EOG44J2JB
            NextBio:663917 ArrayExpress:Q76IQ7 Genevestigator:Q76IQ7
            GermOnline:ENSRNOG00000008146 Uniprot:Q76IQ7
        Length = 473

 Score = 115 (45.5 bits), Expect = 4.6e-06, P = 4.6e-06
 Identities = 26/77 (33%), Positives = 39/77 (50%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D N P++P+SAY +F  D + + K   P + +   + K     W S+ E +K  Y +K  
Sbjct:   200 DPNEPQKPVSAYALFFRDTQAAIKGQNP-SATFGDVSKIVASMWDSLGEEQKQAYKRKTE 258

Query:    98 NKKAEYELALEAYKKQL 114
               K EY  AL AY+  L
Sbjct:   259 AAKKEYLKALAAYRASL 275


>UNIPROTKB|P23497 [details] [associations]
            symbol:SP100 "Nuclear autoantigen Sp-100" species:9606
            "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0019048
            "virus-host interaction" evidence=IEA] [GO:0019904 "protein domain
            specific binding" evidence=IPI] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0016605 "PML
            body" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS]
            [GO:0019221 "cytokine-mediated signaling pathway" evidence=TAS]
            [GO:0060333 "interferon-gamma-mediated signaling pathway"
            evidence=IC;TAS] [GO:0005730 "nucleolus" evidence=IMP;IDA]
            [GO:0032526 "response to retinoic acid" evidence=IDA] [GO:0034097
            "response to cytokine stimulus" evidence=IDA] [GO:0034399 "nuclear
            periphery" evidence=IDA] [GO:0048384 "retinoic acid receptor
            signaling pathway" evidence=IC] [GO:0003713 "transcription
            coactivator activity" evidence=IDA] [GO:0051091 "positive
            regulation of sequence-specific DNA binding transcription factor
            activity" evidence=IDA] [GO:0006978 "DNA damage response, signal
            transduction by p53 class mediator resulting in transcription of
            p21 class mediator" evidence=IDA] [GO:0034340 "response to type I
            interferon" evidence=IDA;IMP] [GO:0034341 "response to
            interferon-gamma" evidence=IDA;IMP] [GO:0060337 "type I
            interferon-mediated signaling pathway" evidence=IC] [GO:0070087
            "chromo shadow domain binding" evidence=IPI] [GO:0042802 "identical
            protein binding" evidence=IPI] [GO:0045892 "negative regulation of
            transcription, DNA-dependent" evidence=IMP;IDA] [GO:0019900 "kinase
            binding" evidence=IPI] [GO:0045893 "positive regulation of
            transcription, DNA-dependent" evidence=IDA;IMP] [GO:0003714
            "transcription corepressor activity" evidence=IDA] [GO:0043392
            "negative regulation of DNA binding" evidence=IDA] [GO:0043433
            "negative regulation of sequence-specific DNA binding transcription
            factor activity" evidence=IDA] [GO:0000122 "negative regulation of
            transcription from RNA polymerase II promoter" evidence=IDA]
            [GO:0051271 "negative regulation of cellular component movement"
            evidence=IMP] [GO:0032897 "negative regulation of viral
            transcription" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
            [GO:0042803 "protein homodimerization activity" evidence=IPI]
            [GO:0008134 "transcription factor binding" evidence=IPI]
            InterPro:IPR009071 InterPro:IPR000770 InterPro:IPR004865
            Pfam:PF01342 Pfam:PF03172 PROSITE:PS50864 PROSITE:PS51414
            SMART:SM00258 Pfam:PF00505 GO:GO:0005737 Reactome:REACT_6900
            GO:GO:0003714 GO:GO:0045892 GO:GO:0019048 GO:GO:0045893
            GO:GO:0060333 GO:GO:0060337 GO:GO:0051091 GO:GO:0005730
            GO:GO:0003677 GO:GO:0016605 GO:GO:0034097 GO:GO:0000122
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0003713 GO:GO:0032526 GO:GO:0051271 GO:GO:0043433
            Gene3D:3.10.390.10 InterPro:IPR010919 SUPFAM:SSF63763 GO:GO:0048384
            GO:GO:0034399 GO:GO:0006978 Pfam:PF09011 GO:GO:0043392
            OrthoDB:EOG44QT09 GO:GO:0034340 GO:GO:0032897 EMBL:AC009949
            EMBL:U36501 EMBL:AF056322 EMBL:M60618 EMBL:AF255565 EMBL:AK293373
            EMBL:AC010149 EMBL:BC011562 EMBL:X95472 EMBL:L79986 EMBL:L79987
            EMBL:L79988 EMBL:AF076675 EMBL:AF378670 IPI:IPI00011675
            IPI:IPI00218324 IPI:IPI00218325 IPI:IPI00218326 IPI:IPI00218327
            IPI:IPI00917048 IPI:IPI00917345 PIR:A37244 RefSeq:NP_001073860.1
            RefSeq:NP_001193630.1 RefSeq:NP_001193631.1 RefSeq:NP_001193632.1
            RefSeq:NP_001193633.1 RefSeq:NP_003104.2 UniGene:Hs.369056 PDB:1H5P
            PDBsum:1H5P ProteinModelPortal:P23497 SMR:P23497 DIP:DIP-5983N
            IntAct:P23497 MINT:MINT-1188807 STRING:P23497 PhosphoSite:P23497
            DMDM:13878931 PaxDb:P23497 PRIDE:P23497 Ensembl:ENST00000264052
            Ensembl:ENST00000340126 Ensembl:ENST00000409341
            Ensembl:ENST00000409897 Ensembl:ENST00000427101 GeneID:6672
            KEGG:hsa:6672 UCSC:uc002vqq.2 UCSC:uc002vqt.3 UCSC:uc002vqu.1
            UCSC:uc010zmb.2 CTD:6672 GeneCards:GC02P231280 HGNC:HGNC:11206
            HPA:HPA016707 HPA:HPA017384 MIM:604585 neXtProt:NX_P23497
            PharmGKB:PA36043 eggNOG:NOG249894 HOVERGEN:HBG057632 KO:K15413
            OMA:TESCEQV ChiTaRS:SP100 EvolutionaryTrace:P23497 GenomeRNAi:6672
            NextBio:26015 ArrayExpress:P23497 Bgee:P23497 CleanEx:HS_SP100
            Genevestigator:P23497 GermOnline:ENSG00000067066 Uniprot:P23497
        Length = 879

 Score = 118 (46.6 bits), Expect = 5.0e-06, P = 5.0e-06
 Identities = 27/82 (32%), Positives = 41/82 (50%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NAPKRP  A+F+F  ++R   K   P       + K  G  W + + A+K  Y +KA 
Sbjct:   765 DPNAPKRPPLAFFLFCSEYRPKIKGEHPGLSIDDVVKKLAGM-WNNTAAADKQFYEKKAA 823

Query:    98 NKKAEYELALEAYKKQLNDNGA 119
               K +Y+  + AY+ +   N A
Sbjct:   824 KLKEKYKKDIAAYRAKGKPNSA 845


>UNIPROTKB|G3XAC7 [details] [associations]
            symbol:TOX2 "Chromosome 20 open reading frame 100, isoform
            CRA_b" species:9606 "Homo sapiens" [GO:0001085 "RNA polymerase II
            transcription factor binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0008585 "female gonad development" evidence=IEA]
            [GO:0034698 "response to gonadotropin stimulus" evidence=IEA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IEA] InterPro:IPR009071
            Pfam:PF00505 GO:GO:0005634 EMBL:CH471077 GO:GO:0045944
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            EMBL:AL034419 EMBL:AL121587 EMBL:AL035089 EMBL:AL353797
            UniGene:Hs.26608 GeneID:84969 KEGG:hsa:84969 CTD:84969
            HGNC:HGNC:16095 GenomeRNAi:84969 NextBio:75504
            RefSeq:NP_001092267.1 ProteinModelPortal:G3XAC7 SMR:G3XAC7
            Ensembl:ENST00000341197 OMA:DHEASYH ArrayExpress:G3XAC7 Bgee:G3XAC7
            Uniprot:G3XAC7
        Length = 506

 Score = 115 (45.5 bits), Expect = 5.0e-06, P = 5.0e-06
 Identities = 26/77 (33%), Positives = 39/77 (50%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D N P++P+SAY +F  D + + K   P + +   + K     W S+ E +K  Y +K  
Sbjct:   242 DPNEPQKPVSAYALFFRDTQAAIKGQNP-SATFGDVSKIVASMWDSLGEEQKQAYKRKTE 300

Query:    98 NKKAEYELALEAYKKQL 114
               K EY  AL AY+  L
Sbjct:   301 AAKKEYLKALAAYRASL 317


>UNIPROTKB|E1BL97 [details] [associations]
            symbol:SOX13 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
            GO:GO:0005634 GO:GO:0043565 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00690000101789
            OMA:TMVNCTV EMBL:DAAA02041911 IPI:IPI00825051
            Ensembl:ENSBTAT00000010692 Uniprot:E1BL97
        Length = 622

 Score = 116 (45.9 bits), Expect = 5.2e-06, P = 5.2e-06
 Identities = 24/73 (32%), Positives = 44/73 (60%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             +S+  KRP++A+ ++ +D R+   ++FPD  + +++ K  G +WKSMS  EK PY ++  
Sbjct:   420 NSSHIKRPMNAFMVWAKDERRKILQAFPDMHN-SSISKILGSRWKSMSNQEKQPYYEEQA 478

Query:    98 NKKAEYELALEAY 110
                 ++   LE Y
Sbjct:   479 RLSRQH---LEKY 488


>RGD|2319002 [details] [associations]
            symbol:LOC100365478 "high-mobility group box 1-like"
            species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
            RGD:2319002 GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
            IPI:IPI00958625 Ensembl:ENSRNOT00000062071 Uniprot:F1LWU2
        Length = 186

 Score = 106 (42.4 bits), Expect = 5.4e-06, P = 5.4e-06
 Identities = 28/74 (37%), Positives = 36/74 (48%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NA KRP SA F+F  D R   K   P   S+  + K  G+ W S    +K P  +KA 
Sbjct:    90 DPNALKRPPSA-FLFCSDHRPKIKGKHP-GLSIGDVAKNLGEMWNSTVMDDKQPSEKKAT 147

Query:    98 NKKAEYELALEAYK 111
               K  YE  + AY+
Sbjct:   148 KLKETYEKDIAAYR 161


>UNIPROTKB|F1SFJ1 [details] [associations]
            symbol:SOX5 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:2000741 "positive regulation of mesenchymal stem cell
            differentiation" evidence=IEA] [GO:0071560 "cellular response to
            transforming growth factor beta stimulus" evidence=IEA] [GO:0061036
            "positive regulation of cartilage development" evidence=IEA]
            [GO:0060164 "regulation of timing of neuron differentiation"
            evidence=IEA] [GO:0051216 "cartilage development" evidence=IEA]
            [GO:0048709 "oligodendrocyte differentiation" evidence=IEA]
            [GO:0046982 "protein heterodimerization activity" evidence=IEA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IEA] [GO:0045892 "negative
            regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0045165 "cell fate commitment" evidence=IEA] [GO:0044212
            "transcription regulatory region DNA binding" evidence=IEA]
            [GO:0032332 "positive regulation of chondrocyte differentiation"
            evidence=IEA] [GO:0021953 "central nervous system neuron
            differentiation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=IEA] [GO:0001701 "in utero embryonic
            development" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
            GO:GO:0005634 GO:GO:0045892 GO:GO:0071560 GO:GO:0001701
            GO:GO:0045944 GO:GO:0003700 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0044212 GO:GO:0032332
            GO:GO:0051216 GO:GO:0048709 GO:GO:0045165 GO:GO:0061036
            GO:GO:0060164 GO:GO:0021953 GeneTree:ENSGT00690000101789
            GO:GO:2000741 EMBL:CU695217 Ensembl:ENSSSCT00000000610 OMA:GEEPHII
            Uniprot:F1SFJ1
        Length = 316

 Score = 111 (44.1 bits), Expect = 6.3e-06, P = 6.3e-06
 Identities = 24/74 (32%), Positives = 43/74 (58%)

Query:    39 SNAP--KRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKA 96
             SN P  KRP++A+ ++ +D R+   ++FPD  + + + K  G +WK+M+  EK PY ++ 
Sbjct:   108 SNEPHIKRPMNAFMVWAKDERRKILQAFPDMHN-SNISKILGSRWKAMTNLEKQPYYEEQ 166

Query:    97 LNKKAEYELALEAY 110
                  ++   LE Y
Sbjct:   167 ARLSKQH---LEKY 177


>MGI|MGI:107810 [details] [associations]
            symbol:Tfam "transcription factor A, mitochondrial"
            species:10090 "Mus musculus" [GO:0003677 "DNA binding"
            evidence=ISO] [GO:0003682 "chromatin binding" evidence=ISO]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=ISO;TAS] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0005667 "transcription factor complex" evidence=TAS]
            [GO:0005739 "mitochondrion" evidence=ISO;IDA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=TAS]
            [GO:0006390 "transcription from mitochondrial promoter"
            evidence=ISO] [GO:0006391 "transcription initiation from
            mitochondrial promoter" evidence=ISO] [GO:0008301 "DNA binding,
            bending" evidence=ISO] [GO:0031072 "heat shock protein binding"
            evidence=ISO] [GO:0033108 "mitochondrial respiratory chain complex
            assembly" evidence=IMP] [GO:0042645 "mitochondrial nucleoid"
            evidence=ISO] [GO:0045893 "positive regulation of transcription,
            DNA-dependent" evidence=ISO] [GO:0070363 "mitochondrial light
            strand promoter sense binding" evidence=ISO] InterPro:IPR009071
            EMBL:U57939 MGI:MGI:107810 Pfam:PF00505 GO:GO:0045893 GO:GO:0003700
            GO:GO:0003682 GO:GO:0005667 GO:GO:0008301 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0042645
            GO:GO:0033108 Pfam:PF09011 GO:GO:0006391 CTD:7019 eggNOG:NOG297801
            HOGENOM:HOG000139423 HOVERGEN:HBG106674 KO:K11830 GO:GO:0070363
            OMA:YENEMKS OrthoDB:EOG4KKZ4D ChiTaRS:TFAM EMBL:U63858
            EMBL:BC001987 EMBL:BC083084 EMBL:AK004857 EMBL:AK050446
            EMBL:AK167348 EMBL:AK167777 EMBL:AK169808 EMBL:U63712 EMBL:L07107
            IPI:IPI00112822 IPI:IPI00230512 PIR:I49745 RefSeq:NP_033386.1
            UniGene:Mm.229292 ProteinModelPortal:P40630 SMR:P40630
            IntAct:P40630 STRING:P40630 PhosphoSite:P40630 PaxDb:P40630
            PRIDE:P40630 Ensembl:ENSMUST00000092430 Ensembl:ENSMUST00000105432
            Ensembl:ENSMUST00000121685 GeneID:21780 KEGG:mmu:21780
            UCSC:uc007fol.1 UCSC:uc007fom.1 GeneTree:ENSGT00440000039001
            InParanoid:P40630 NextBio:301118 Bgee:P40630 CleanEx:MM_TFAM
            Genevestigator:P40630 GermOnline:ENSMUSG00000003923 Uniprot:P40630
        Length = 243

 Score = 108 (43.1 bits), Expect = 7.6e-06, P = 7.6e-06
 Identities = 26/79 (32%), Positives = 45/79 (56%)

Query:    42 PKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAG--GQKWKSMSEAEKAPYVQKALNK 99
             PKRP SAY I++        ESF + K  +A GK     + WK++S  EK  Y+Q A + 
Sbjct:   154 PKRPRSAYNIYVS-------ESFQEAKDDSAQGKLKLVNEAWKNLSPEEKQAYIQLAKDD 206

Query:   100 KAEYELALEAYKKQLNDNG 118
             +  Y+  ++++++Q+ + G
Sbjct:   207 RIRYDNEMKSWEEQMAEVG 225

 Score = 97 (39.2 bits), Expect = 0.00065, P = 0.00065
 Identities = 24/73 (32%), Positives = 35/73 (47%)

Query:    42 PKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKA 101
             PK+P+S+Y  F  +    FK   PD K    + K     W+ + EAEK  Y      +  
Sbjct:    49 PKKPMSSYLRFSTEQLPKFKAKHPDAKLSELVRKIAAL-WRELPEAEKKVYEADFKAEWK 107

Query:   102 EYELALEAYKKQL 114
              Y+ A+  YK+QL
Sbjct:   108 AYKEAVSKYKEQL 120


>RGD|1583212 [details] [associations]
            symbol:LOC685091 "similar to High mobility group protein 1
            (HMG-1) (High mobility group protein B1) (Amphoterin)
            (Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
            [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] REFSEQ:XM_001062256 Ncbi:XP_001062256
        Length = 203

 Score = 106 (42.4 bits), Expect = 7.6e-06, P = 7.6e-06
 Identities = 28/74 (37%), Positives = 36/74 (48%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D NA KRP SA F+F  D R   K   P   S+  + K  G+ W S    +K P  +KA 
Sbjct:    98 DPNALKRPPSA-FLFCSDHRPKIKGKHP-GLSIGDVAKNLGEMWNSTVMDDKQPSEKKAT 155

Query:    98 NKKAEYELALEAYK 111
               K  YE  + AY+
Sbjct:   156 KLKETYEKDIAAYR 169


>UNIPROTKB|Q90ZH7 [details] [associations]
            symbol:sox18-b "Transcription factor Sox-18B" species:8355
            "Xenopus laevis" [GO:0005634 "nucleus" evidence=ISS] [GO:0007507
            "heart development" evidence=IMP] [GO:0030178 "negative regulation
            of Wnt receptor signaling pathway" evidence=IMP] [GO:0043565
            "sequence-specific DNA binding" evidence=IDA] InterPro:IPR009071
            Pfam:PF00505 GO:GO:0005634 GO:GO:0007507 GO:GO:0006355
            GO:GO:0043565 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0030178 HSSP:P48431
            InterPro:IPR021934 Pfam:PF12067 PROSITE:PS51516 KO:K09270
            EMBL:AB052693 EMBL:BC072123 RefSeq:NP_001082104.1 UniGene:Xl.11959
            ProteinModelPortal:Q90ZH7 SMR:Q90ZH7 GeneID:398227 KEGG:xla:398227
            CTD:398227 Xenbase:XB-GENE-6251810 Uniprot:Q90ZH7
        Length = 361

 Score = 111 (44.1 bits), Expect = 8.0e-06, P = 8.0e-06
 Identities = 20/61 (32%), Positives = 39/61 (63%)

Query:    43 KRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAE 102
             +RP++A+ ++ +D RK   +  PD  + A + K  GQ WK+++ AEK P+V++A   + +
Sbjct:    67 RRPMNAFMVWAKDERKRLAQQNPDLHN-AVLSKMLGQSWKNLTSAEKRPFVEEAERLRVQ 125

Query:   103 Y 103
             +
Sbjct:   126 H 126


>UNIPROTKB|F1S3U8 [details] [associations]
            symbol:SOX13 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
            GO:GO:0005634 GO:GO:0043565 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00690000101789
            OMA:TMVNCTV EMBL:CU972366 Ensembl:ENSSSCT00000016646 Uniprot:F1S3U8
        Length = 545

 Score = 113 (44.8 bits), Expect = 9.2e-06, P = 9.2e-06
 Identities = 23/73 (31%), Positives = 44/73 (60%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             +S+  KRP++A+ ++ +D R+   ++FPD  + +++ K  G +WKSM+  EK PY ++  
Sbjct:   437 NSSHIKRPMNAFMVWAKDERRKILQAFPDMHN-SSISKILGSRWKSMTNQEKQPYYEEQA 495

Query:    98 NKKAEYELALEAY 110
                 ++   LE Y
Sbjct:   496 RLSRQH---LEKY 505


>UNIPROTKB|F1LVZ2 [details] [associations]
            symbol:F1LVZ2 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
            InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
            GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 Pfam:PF09011 GeneTree:ENSGT00560000076717
            IPI:IPI00561233 Ensembl:ENSRNOT00000040837 Uniprot:F1LVZ2
        Length = 199

 Score = 105 (42.0 bits), Expect = 9.3e-06, P = 9.3e-06
 Identities = 36/116 (31%), Positives = 55/116 (47%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D +APKRPLS  F F  ++ +  K   P   S+  + K  G+ W S ++ +K PY + A 
Sbjct:    80 DPSAPKRPLSL-FSFCSEYPQ-IKGEHP-GLSIGDVAKKLGEMWNS-TDTDKQPYGKMAA 135

Query:    98 NKKAEYELALEAYKKQLNDNGA--GV--SEDSWKXXXXXXXXXXXXXEINDEAEQE 149
               K +YE  + AY+ +   + A  GV  +E S K             E  +E E+E
Sbjct:   136 KLKEKYEKDIAAYRAKGKPDTAKKGVVKAEKSKKKKEEEDDEEDKEDEEEEEEEEE 191


>RGD|2319567 [details] [associations]
            symbol:LOC100361707 "Ac2-008-like" species:10116 "Rattus
            norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
            PROSITE:PS00353 RGD:2319567 GO:GO:0005634 GO:GO:0003677
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            Pfam:PF09011 GeneTree:ENSGT00560000076717 EMBL:AC128270
            IPI:IPI00382302 Ensembl:ENSRNOT00000047163 ArrayExpress:F1LNG6
            Uniprot:F1LNG6
        Length = 219

 Score = 106 (42.4 bits), Expect = 9.7e-06, P = 9.7e-06
 Identities = 22/74 (29%), Positives = 38/74 (51%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPD-NKSVAAMGKAGGQKWKSMSEAEKAPYVQKA 96
             D   P+  +S+Y  F++  R+  K+  PD + + +   K   ++WK+MS  EK  +   A
Sbjct:   133 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 192

Query:    97 LNKKAEYELALEAY 110
                KA YE  ++ Y
Sbjct:   193 KADKARYEREMKTY 206


>ZFIN|ZDB-GENE-011026-1 [details] [associations]
            symbol:sox32 "SRY-box containing gene 32"
            species:7955 "Danio rerio" [GO:0001706 "endoderm formation"
            evidence=IDA;IMP] [GO:0003007 "heart morphogenesis" evidence=IMP]
            [GO:0007498 "mesoderm development" evidence=IDA] [GO:0001885
            "endothelial cell development" evidence=IMP] [GO:0035050 "embryonic
            heart tube development" evidence=IMP] [GO:0007368 "determination of
            left/right symmetry" evidence=IMP] [GO:0003677 "DNA binding"
            evidence=IDA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IGI;IDA] [GO:0045893
            "positive regulation of transcription, DNA-dependent"
            evidence=IGI;IDA] [GO:0005634 "nucleus" evidence=IC] [GO:0007492
            "endoderm development" evidence=IMP] [GO:0007493 "endodermal cell
            fate determination" evidence=IMP] [GO:0042074 "cell migration
            involved in gastrulation" evidence=IMP] [GO:0003262 "endocardial
            progenitor cell migration to the midline involved in heart field
            formation" evidence=IMP] [GO:0061035 "regulation of cartilage
            development" evidence=IGI;IMP] [GO:0010468 "regulation of gene
            expression" evidence=IMP] InterPro:IPR009071 Pfam:PF00505
            ZFIN:ZDB-GENE-011026-1 GO:GO:0005634 GO:GO:0045893 GO:GO:0007498
            GO:GO:0003677 GO:GO:0003700 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0007368 GO:GO:0042074
            GO:GO:0001885 GO:GO:0035050 GO:GO:0007493 GO:GO:0061035 HSSP:P48432
            GO:GO:0003262 EMBL:BC097087 EMBL:AF362749 IPI:IPI00494054
            RefSeq:NP_571926.1 UniGene:Dr.133216 SMR:Q90Z46 STRING:Q90Z46
            GeneID:116990 KEGG:dre:116990 CTD:116990 HOVERGEN:HBG098276
            InParanoid:Q90Z46 NextBio:20796959 Uniprot:Q90Z46
        Length = 307

 Score = 109 (43.4 bits), Expect = 9.9e-06, P = 9.9e-06
 Identities = 32/129 (24%), Positives = 60/129 (46%)

Query:    43 KRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAE 102
             +RPL+A+ I+ ++ R+   +  PD ++   + K  G+ WK+MS A+K PY+Q+A   + +
Sbjct:    71 RRPLNAFIIWTKEERRRLAQLNPDLENTD-LSKILGKTWKAMSLADKRPYMQEAERLRIQ 129

Query:   103 YELALEAYK---KQLNDNGAGVSEDSWKXXXXXXXXXXXXXEINDEAEQEFSSQVSSYFM 159
             + +    YK   ++   N       S +                 +A Q   +Q++SY +
Sbjct:   130 HTIDYPNYKYRPRRRKCNKRSSKMPSSENVSSPNATFDLSYMFQGQAPQRPYNQINSYRL 189

Query:   160 GFYCFSSRN 168
                 FS  N
Sbjct:   190 PHNGFSFEN 198


>MGI|MGI:98361 [details] [associations]
            symbol:Sox13 "SRY-box containing gene 13" species:10090 "Mus
            musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IDA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0043565 "sequence-specific DNA
            binding" evidence=IDA] InterPro:IPR009071 MGI:MGI:98361
            Pfam:PF00505 GO:GO:0005634 GO:GO:0006355 GO:GO:0043565
            GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GeneTree:ENSGT00690000101789 CTD:9580
            eggNOG:NOG275089 HOVERGEN:HBG003915 KO:K09269 OMA:TMVNCTV
            EMBL:BC007130 EMBL:AB006329 EMBL:AJ000740 EMBL:Z18962
            IPI:IPI00228353 PIR:JC6550 PIR:S30241 RefSeq:NP_035569.2
            UniGene:Mm.8575 ProteinModelPortal:Q04891 SMR:Q04891 STRING:Q04891
            PhosphoSite:Q04891 PRIDE:Q04891 Ensembl:ENSMUST00000094551
            Ensembl:ENSMUST00000153799 GeneID:20668 KEGG:mmu:20668
            UCSC:uc007cqk.1 HOGENOM:HOG000056455 InParanoid:Q04891
            NextBio:299137 Bgee:Q04891 CleanEx:MM_SOX13 Genevestigator:Q04891
            GermOnline:ENSMUSG00000070643 Uniprot:Q04891
        Length = 613

 Score = 113 (44.8 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 23/73 (31%), Positives = 44/73 (60%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             +S+  KRP++A+ ++ +D R+   ++FPD  + +++ K  G +WKSM+  EK PY ++  
Sbjct:   412 NSSHIKRPMNAFMVWAKDERRKILQAFPDMHN-SSISKILGSRWKSMTNQEKQPYYEEQA 470

Query:    98 NKKAEYELALEAY 110
                 ++   LE Y
Sbjct:   471 RLSRQH---LEKY 480


>RGD|1309674 [details] [associations]
            symbol:Sox13 "SRY (sex determining region Y)-box 13"
            species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
            evidence=IEA;ISO] [GO:0043565 "sequence-specific DNA binding"
            evidence=IEA;ISO] InterPro:IPR009071 Pfam:PF00505 RGD:1309674
            GO:GO:0005634 GO:GO:0043565 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00690000101789
            OrthoDB:EOG40S0F9 IPI:IPI00869801 Ensembl:ENSRNOT00000032244
            UCSC:RGD:1309674 Uniprot:D4A8S0
        Length = 613

 Score = 113 (44.8 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 23/73 (31%), Positives = 44/73 (60%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             +S+  KRP++A+ ++ +D R+   ++FPD  + +++ K  G +WKSM+  EK PY ++  
Sbjct:   412 NSSHIKRPMNAFMVWAKDERRKILQAFPDMHN-SSISKILGSRWKSMTNQEKQPYYEEQA 470

Query:    98 NKKAEYELALEAY 110
                 ++   LE Y
Sbjct:   471 RLSRQH---LEKY 480


>UNIPROTKB|Q9UN79 [details] [associations]
            symbol:SOX13 "Transcription factor SOX-13" species:9606
            "Homo sapiens" [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0043565
            "sequence-specific DNA binding" evidence=ISS] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=TAS] [GO:0009653 "anatomical structure morphogenesis"
            evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
            InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634 GO:GO:0043565
            EMBL:CH471067 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0009653
            EMBL:AL592146 EMBL:AF083105 EMBL:AF098915 EMBL:AF116571
            EMBL:AK304192 EMBL:AF149301 EMBL:BC106038 IPI:IPI00219551
            RefSeq:NP_005677.2 UniGene:Hs.201671 ProteinModelPortal:Q9UN79
            SMR:Q9UN79 IntAct:Q9UN79 MINT:MINT-1179847 STRING:Q9UN79
            PhosphoSite:Q9UN79 DMDM:288558840 PRIDE:Q9UN79 DNASU:9580
            Ensembl:ENST00000367204 GeneID:9580 KEGG:hsa:9580 UCSC:uc001ham.3
            CTD:9580 GeneCards:GC01P204043 HGNC:HGNC:11192 MIM:604748
            neXtProt:NX_Q9UN79 PharmGKB:PA36029 eggNOG:NOG275089
            HOVERGEN:HBG003915 InParanoid:Q9UN79 KO:K09269 OMA:TMVNCTV
            OrthoDB:EOG40S0F9 GenomeRNAi:9580 NextBio:35933 ArrayExpress:Q9UN79
            Bgee:Q9UN79 CleanEx:HS_SOX13 Genevestigator:Q9UN79
            GermOnline:ENSG00000143842 Uniprot:Q9UN79
        Length = 622

 Score = 113 (44.8 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 23/73 (31%), Positives = 44/73 (60%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             +S+  KRP++A+ ++ +D R+   ++FPD  + +++ K  G +WKSM+  EK PY ++  
Sbjct:   420 NSSHIKRPMNAFMVWAKDERRKILQAFPDMHN-SSISKILGSRWKSMTNQEKQPYYEEQA 478

Query:    98 NKKAEYELALEAY 110
                 ++   LE Y
Sbjct:   479 RLSRQH---LEKY 488


>UNIPROTKB|P40647 [details] [associations]
            symbol:sox5 "Transcription factor Sox-5" species:8355
            "Xenopus laevis" [GO:0090263 "positive regulation of canonical Wnt
            receptor signaling pathway" evidence=IDA] InterPro:IPR009071
            Pfam:PF00505 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
            GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0090263 HOVERGEN:HBG003915 KO:K09269 CTD:6660
            EMBL:BC142559 EMBL:DR718509 EMBL:X65653 PIR:S22949
            RefSeq:NP_001167508.1 UniGene:Xl.21446 UniGene:Xl.85854
            GeneID:100381154 KEGG:xla:100381154 Xenbase:XB-GENE-865667
            Uniprot:P40647
        Length = 757

 Score = 114 (45.2 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 25/74 (33%), Positives = 43/74 (58%)

Query:    39 SNAP--KRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKA 96
             SN P  KRP++A+ ++ +D R+   ++FPD  + + + K  G +WKSM+  EK PY ++ 
Sbjct:   554 SNEPHIKRPMNAFMVWAKDERRKILQAFPDMHN-SNISKILGSRWKSMTNLEKQPYYEEQ 612

Query:    97 LNKKAEYELALEAY 110
                  ++   LE Y
Sbjct:   613 ARLSKQH---LEKY 623


>UNIPROTKB|F1M607 [details] [associations]
            symbol:F1M607 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
            InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
            GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 Pfam:PF09011 GeneTree:ENSGT00560000076717
            IPI:IPI00558117 Ensembl:ENSRNOT00000046997 Uniprot:F1M607
        Length = 211

 Score = 105 (42.0 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 32/116 (27%), Positives = 54/116 (46%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D +APKR  SA+F+   ++R   K   P   S+  + +  G+ W + +  +K P  +KA 
Sbjct:    87 DPSAPKRLPSAFFLLCSEYRPKIKGEHP-GLSIGDVARKLGEMWNNTAADDKQP-CEKAA 144

Query:    98 NKKAEYELALEAYKKQLNDNGA--GV--SEDSWKXXXXXXXXXXXXXEINDEAEQE 149
               K +YE  + AY+ +   + A  GV  +E S K             E  +E ++E
Sbjct:   145 KLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKKEEDDEEDEEDEEEEEEKEE 200


>ZFIN|ZDB-GENE-081120-6 [details] [associations]
            symbol:sox6 "SRY-box containing gene 6" species:7955
            "Danio rerio" [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0007275 "multicellular organismal
            development" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            InterPro:IPR009071 InterPro:IPR027153 Pfam:PF00505
            ZFIN:ZDB-GENE-081120-6 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00690000101789
            PANTHER:PTHR10270:SF89 EMBL:BX537340 EMBL:BX936464 EMBL:BX936427
            IPI:IPI01024072 Ensembl:ENSDART00000150068 ArrayExpress:F8W2H3
            Bgee:F8W2H3 Uniprot:F8W2H3
        Length = 785

 Score = 114 (45.2 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 22/60 (36%), Positives = 39/60 (65%)

Query:    38 DSNAP--KRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQK 95
             +SN P  KRP++A+ ++ +D R+   ++FPD  + + + K  G +WKSM+  EK PY ++
Sbjct:   570 NSNEPHIKRPMNAFMVWAKDERRKILQAFPDMHN-SNISKILGSRWKSMTNQEKQPYYEE 628


>UNIPROTKB|F6RRS7 [details] [associations]
            symbol:SOX18 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0072091 "regulation of stem cell proliferation"
            evidence=IEA] [GO:0061028 "establishment of endothelial barrier"
            evidence=IEA] [GO:0060956 "endocardial cell differentiation"
            evidence=IEA] [GO:0060836 "lymphatic endothelial cell
            differentiation" evidence=IEA] [GO:0060214 "endocardium formation"
            evidence=IEA] [GO:0048866 "stem cell fate specification"
            evidence=IEA] [GO:0048469 "cell maturation" evidence=IEA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IEA] [GO:0045892 "negative
            regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0044212 "transcription regulatory region DNA binding"
            evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
            evidence=IEA] [GO:0043534 "blood vessel endothelial cell migration"
            evidence=IEA] [GO:0035050 "embryonic heart tube development"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IEA] [GO:0001946 "lymphangiogenesis" evidence=IEA]
            [GO:0001942 "hair follicle development" evidence=IEA] [GO:0001701
            "in utero embryonic development" evidence=IEA] [GO:0001570
            "vasculogenesis" evidence=IEA] [GO:0001525 "angiogenesis"
            evidence=IEA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
            GO:GO:0045892 GO:GO:0043565 GO:GO:0001701 GO:GO:0045944
            GO:GO:0003700 GO:GO:0001525 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0044212 GO:GO:0001942
            GO:GO:0001946 GO:GO:0060836 GO:GO:0043534 GO:GO:0001570
            GO:GO:0048469 GO:GO:0035050 GO:GO:0072091 GO:GO:0060956
            GO:GO:0060214 GO:GO:0061028 InterPro:IPR021934 Pfam:PF12067
            PROSITE:PS51516 GeneTree:ENSGT00670000097649 GO:GO:0048866
            OMA:YLNCSRT EMBL:DAAA02036216 EMBL:DAAA02036215 IPI:IPI00717042
            Ensembl:ENSBTAT00000015485 Uniprot:F6RRS7
        Length = 388

 Score = 110 (43.8 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 21/66 (31%), Positives = 40/66 (60%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D +  +RP++A+ ++ +D RK   +  PD  + A + K  G+ WK +S AEK P+V++A 
Sbjct:    80 DESRIRRPMNAFMVWAKDERKRLAQQNPDLHN-AVLSKMLGKAWKELSPAEKRPFVEEAE 138

Query:    98 NKKAEY 103
               + ++
Sbjct:   139 RLRVQH 144


>MGI|MGI:1914117 [details] [associations]
            symbol:Hmg20a "high mobility group 20A" species:10090 "Mus
            musculus" [GO:0000122 "negative regulation of transcription from
            RNA polymerase II promoter" evidence=IMP] [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0016568 "chromatin modification" evidence=IMP] [GO:0045665
            "negative regulation of neuron differentiation" evidence=IGI;IDA]
            [GO:0046982 "protein heterodimerization activity" evidence=IPI]
            InterPro:IPR009071 PROSITE:PS00353 MGI:MGI:1914117 Pfam:PF00505
            GO:GO:0005634 GO:GO:0003677 GO:GO:0045665 GO:GO:0006351
            GO:GO:0016568 GO:GO:0000122 eggNOG:COG5648 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 CTD:10363
            HOVERGEN:HBG059870 OMA:DKERYMR OrthoDB:EOG4H4643 ChiTaRS:HMG20A
            EMBL:DQ182735 EMBL:AK004596 EMBL:AK017716 EMBL:AK032790
            EMBL:AK039222 EMBL:AK086346 EMBL:AK134213 EMBL:BC013804
            EMBL:BC068257 IPI:IPI00120110 IPI:IPI00228054 IPI:IPI00458691
            IPI:IPI00473389 RefSeq:NP_080088.1 UniGene:Mm.150856
            ProteinModelPortal:Q9DC33 SMR:Q9DC33 IntAct:Q9DC33 STRING:Q9DC33
            PhosphoSite:Q9DC33 PaxDb:Q9DC33 PRIDE:Q9DC33
            Ensembl:ENSMUST00000034879 GeneID:66867 KEGG:mmu:66867
            UCSC:uc009ptb.1 UCSC:uc009ptc.1 UCSC:uc009ptd.1 UCSC:uc009pte.1
            GeneTree:ENSGT00700000104521 InParanoid:Q9DC33 NextBio:322867
            Bgee:Q9DC33 CleanEx:MM_HMG20A Genevestigator:Q9DC33
            GermOnline:ENSMUSG00000032329 Uniprot:Q9DC33
        Length = 346

 Score = 109 (43.4 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 25/75 (33%), Positives = 37/75 (49%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             DSNAPK PL+ Y  FM + R+  +   P+      + +  G +W  +   EK  Y+ +A 
Sbjct:    98 DSNAPKSPLTGYVRFMNERREQLRAKRPE-VPFPEITRMLGNEWSKLPPEEKQRYLDEAD 156

Query:    98 NKKAEYELALEAYKK 112
               K  Y   LE Y+K
Sbjct:   157 RDKERYMKELEQYQK 171


>UNIPROTKB|Q0VCL5 [details] [associations]
            symbol:HMG20A "High-mobility group 20A" species:9913 "Bos
            taurus" [GO:0046982 "protein heterodimerization activity"
            evidence=IEA] [GO:0045665 "negative regulation of neuron
            differentiation" evidence=IEA] [GO:0016568 "chromatin modification"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000122
            "negative regulation of transcription from RNA polymerase II
            promoter" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
            eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 CTD:10363 HOGENOM:HOG000247029 HOVERGEN:HBG059870
            OMA:DKERYMR OrthoDB:EOG4H4643 GeneTree:ENSGT00700000104521
            EMBL:DAAA02052476 EMBL:DAAA02052477 EMBL:BC120108 IPI:IPI00714562
            RefSeq:NP_001069105.1 UniGene:Bt.103436 SMR:Q0VCL5
            Ensembl:ENSBTAT00000027243 GeneID:513719 KEGG:bta:513719
            InParanoid:Q0VCL5 NextBio:20871001 Uniprot:Q0VCL5
        Length = 347

 Score = 109 (43.4 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 25/75 (33%), Positives = 37/75 (49%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             DSNAPK PL+ Y  FM + R+  +   P+      + +  G +W  +   EK  Y+ +A 
Sbjct:    99 DSNAPKSPLTGYVRFMNERREQLRAKRPE-VPFPEITRMLGNEWSKLPPEEKQRYLDEAD 157

Query:    98 NKKAEYELALEAYKK 112
               K  Y   LE Y+K
Sbjct:   158 RDKERYMKELEQYQK 172


>UNIPROTKB|E2RKW6 [details] [associations]
            symbol:HMG20A "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0046982 "protein heterodimerization activity"
            evidence=IEA] [GO:0045665 "negative regulation of neuron
            differentiation" evidence=IEA] [GO:0016568 "chromatin modification"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000122
            "negative regulation of transcription from RNA polymerase II
            promoter" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            CTD:10363 OMA:DKERYMR GeneTree:ENSGT00700000104521
            EMBL:AAEX03016351 RefSeq:XP_853367.1 ProteinModelPortal:E2RKW6
            Ensembl:ENSCAFT00000028701 GeneID:487661 KEGG:cfa:487661
            NextBio:20861223 Uniprot:E2RKW6
        Length = 347

 Score = 109 (43.4 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 25/75 (33%), Positives = 37/75 (49%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             DSNAPK PL+ Y  FM + R+  +   P+      + +  G +W  +   EK  Y+ +A 
Sbjct:    99 DSNAPKSPLTGYVRFMNERREQLRAKRPE-VPFPEITRMLGNEWSKLPPEEKQRYLDEAD 157

Query:    98 NKKAEYELALEAYKK 112
               K  Y   LE Y+K
Sbjct:   158 RDKERYMKELEQYQK 172


>UNIPROTKB|Q9NP66 [details] [associations]
            symbol:HMG20A "High mobility group protein 20A"
            species:9606 "Homo sapiens" [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0000122 "negative regulation of
            transcription from RNA polymerase II promoter" evidence=IEA]
            [GO:0016568 "chromatin modification" evidence=IEA] [GO:0045665
            "negative regulation of neuron differentiation" evidence=IEA]
            [GO:0046982 "protein heterodimerization activity" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0003677 "DNA binding"
            evidence=NAS] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=NAS] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=NAS]
            [GO:0006325 "chromatin organization" evidence=NAS] [GO:0005515
            "protein binding" evidence=IPI] [GO:0005730 "nucleolus"
            evidence=IDA] InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505
            GO:GO:0005634 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
            GO:GO:0016568 eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 EMBL:CH471136 GO:GO:0006325
            CTD:10363 HOGENOM:HOG000247029 HOVERGEN:HBG059870 EMBL:AF146222
            EMBL:AL355736 EMBL:AL355737 EMBL:AK001601 EMBL:BT006716
            EMBL:AK223100 EMBL:AC090984 EMBL:BC021959 IPI:IPI00018924
            IPI:IPI00759508 RefSeq:NP_060670.1 UniGene:Hs.69594
            ProteinModelPortal:Q9NP66 SMR:Q9NP66 IntAct:Q9NP66
            MINT:MINT-1198360 STRING:Q9NP66 PhosphoSite:Q9NP66 DMDM:74734297
            PaxDb:Q9NP66 PeptideAtlas:Q9NP66 PRIDE:Q9NP66 DNASU:10363
            Ensembl:ENST00000336216 Ensembl:ENST00000381714 GeneID:10363
            KEGG:hsa:10363 UCSC:uc002bcq.1 UCSC:uc002bcr.3
            GeneCards:GC15P077712 HGNC:HGNC:5001 HPA:HPA008126 MIM:605534
            neXtProt:NX_Q9NP66 PharmGKB:PA29331 InParanoid:Q9NP66 OMA:DKERYMR
            OrthoDB:EOG4H4643 PhylomeDB:Q9NP66 ChiTaRS:HMG20A GenomeRNAi:10363
            NextBio:39285 ArrayExpress:Q9NP66 Bgee:Q9NP66 CleanEx:HS_HMG20A
            Genevestigator:Q9NP66 GermOnline:ENSG00000140382 Uniprot:Q9NP66
        Length = 347

 Score = 109 (43.4 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 25/75 (33%), Positives = 37/75 (49%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             DSNAPK PL+ Y  FM + R+  +   P+      + +  G +W  +   EK  Y+ +A 
Sbjct:    99 DSNAPKSPLTGYVRFMNERREQLRAKRPE-VPFPEITRMLGNEWSKLPPEEKQRYLDEAD 157

Query:    98 NKKAEYELALEAYKK 112
               K  Y   LE Y+K
Sbjct:   158 RDKERYMKELEQYQK 172


>UNIPROTKB|F1N8B1 [details] [associations]
            symbol:LOC100857252 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000122 "negative regulation of transcription
            from RNA polymerase II promoter" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0016568 "chromatin modification"
            evidence=IEA] [GO:0045665 "negative regulation of neuron
            differentiation" evidence=IEA] [GO:0046982 "protein
            heterodimerization activity" evidence=IEA] InterPro:IPR009071
            Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 IPI:IPI00571034 OMA:DKERYMR
            GeneTree:ENSGT00700000104521 EMBL:AADN02040486 EMBL:AADN02040487
            EMBL:AADN02040488 EMBL:AADN02040489 EMBL:AADN02074740
            EMBL:AADN02074741 EMBL:AADN02074742 EMBL:AADN02074743
            Ensembl:ENSGALT00000004328 ArrayExpress:F1N8B1 Uniprot:F1N8B1
        Length = 348

 Score = 109 (43.4 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 25/75 (33%), Positives = 37/75 (49%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             DSNAPK PL+ Y  FM + R+  +   P+      + +  G +W  +   EK  Y+ +A 
Sbjct:   100 DSNAPKSPLTGYVRFMNERREQLRAKRPE-VPFPEITRMLGNEWSKLPPEEKRRYLDEAD 158

Query:    98 NKKAEYELALEAYKK 112
               K  Y   LE Y+K
Sbjct:   159 RDKERYMRELEQYQK 173


>UNIPROTKB|Q5ZKF4 [details] [associations]
            symbol:HMG20A "High mobility group protein 20A"
            species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
            GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 eggNOG:COG5648
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            EMBL:AJ720130 IPI:IPI00571034 RefSeq:NP_001025565.1
            UniGene:Gga.15892 ProteinModelPortal:Q5ZKF4 SMR:Q5ZKF4
            GeneID:415346 KEGG:gga:415346 CTD:10363 HOGENOM:HOG000247029
            HOVERGEN:HBG059870 InParanoid:Q5ZKF4 NextBio:20818969
            Uniprot:Q5ZKF4
        Length = 348

 Score = 109 (43.4 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 25/75 (33%), Positives = 37/75 (49%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             DSNAPK PL+ Y  FM + R+  +   P+      + +  G +W  +   EK  Y+ +A 
Sbjct:   100 DSNAPKSPLTGYVRFMNERREQLRAKRPE-VPFPEITRMLGNEWSKLPPEEKRRYLDEAD 158

Query:    98 NKKAEYELALEAYKK 112
               K  Y   LE Y+K
Sbjct:   159 RDKERYMRELEQYQK 173


>UNIPROTKB|E1BA21 [details] [associations]
            symbol:TFAM "Transcription factor A, mitochondrial"
            species:9913 "Bos taurus" [GO:0070363 "mitochondrial light strand
            promoter sense binding" evidence=IEA] [GO:0045893 "positive
            regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0042645 "mitochondrial nucleoid" evidence=IEA] [GO:0033108
            "mitochondrial respiratory chain complex assembly" evidence=IEA]
            [GO:0006391 "transcription initiation from mitochondrial promoter"
            evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
            InterPro:IPR009071 Pfam:PF00505 GO:GO:0045893 GO:GO:0003682
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0042645 GO:GO:0033108 Pfam:PF09011 GO:GO:0006391
            IPI:IPI00707168 UniGene:Bt.102328 GO:GO:0070363 OMA:YENEMKS
            GeneTree:ENSGT00440000039001 EMBL:DAAA02062260 EMBL:DAAA02062261
            Ensembl:ENSBTAT00000052511 Uniprot:E1BA21
        Length = 246

 Score = 106 (42.4 bits), Expect = 1.3e-05, P = 1.3e-05
 Identities = 26/77 (33%), Positives = 46/77 (59%)

Query:    42 PKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKA 101
             PKRP SAY IF+ +    F+E+  D  S   + KA  + WK++S ++K  Y+Q A + K 
Sbjct:   155 PKRPRSAYNIFIAE---RFQEA-RDGTSQVKL-KAINENWKNLSNSQKQVYIQLAKDDKI 209

Query:   102 EYELALEAYKKQLNDNG 118
              Y   ++++++Q+ + G
Sbjct:   210 RYYNEMKSWEEQMMEVG 226


>UNIPROTKB|Q0II87 [details] [associations]
            symbol:TFAM "Transcription factor A, mitochondrial"
            species:9913 "Bos taurus" [GO:0008301 "DNA binding, bending"
            evidence=ISS] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=ISS] [GO:0006390
            "transcription from mitochondrial promoter" evidence=ISS]
            [GO:0042645 "mitochondrial nucleoid" evidence=ISS] [GO:0003682
            "chromatin binding" evidence=ISS] [GO:0006391 "transcription
            initiation from mitochondrial promoter" evidence=ISS] [GO:0045893
            "positive regulation of transcription, DNA-dependent" evidence=ISS]
            [GO:0070363 "mitochondrial light strand promoter sense binding"
            evidence=ISS] InterPro:IPR009071 Pfam:PF00505 GO:GO:0045893
            GO:GO:0003700 GO:GO:0003682 GO:GO:0008301 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0042645
            Pfam:PF09011 GO:GO:0006391 EMBL:BC122754 IPI:IPI00707168
            RefSeq:NP_001029188.2 UniGene:Bt.102328 ProteinModelPortal:Q0II87
            STRING:Q0II87 PRIDE:Q0II87 GeneID:510059 KEGG:bta:510059 CTD:7019
            eggNOG:NOG297801 HOGENOM:HOG000139423 HOVERGEN:HBG106674
            InParanoid:Q0II87 KO:K11830 NextBio:20869256 GO:GO:0070363
            Uniprot:Q0II87
        Length = 246

 Score = 106 (42.4 bits), Expect = 1.3e-05, P = 1.3e-05
 Identities = 26/77 (33%), Positives = 46/77 (59%)

Query:    42 PKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKA 101
             PKRP SAY IF+ +    F+E+  D  S   + KA  + WK++S ++K  Y+Q A + K 
Sbjct:   155 PKRPRSAYNIFIAE---RFQEA-RDGTSQVKL-KAINENWKNLSNSQKQVYIQLAKDDKI 209

Query:   102 EYELALEAYKKQLNDNG 118
              Y   ++++++Q+ + G
Sbjct:   210 RYYNEMKSWEEQMMEVG 226


>RGD|1564760 [details] [associations]
            symbol:Hmg20a "high mobility group 20A" species:10116 "Rattus
            norvegicus" [GO:0000122 "negative regulation of transcription from
            RNA polymerase II promoter" evidence=ISO] [GO:0005634 "nucleus"
            evidence=ISO] [GO:0016568 "chromatin modification" evidence=ISO]
            [GO:0045665 "negative regulation of neuron differentiation"
            evidence=ISO] [GO:0046982 "protein heterodimerization activity"
            evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
            InterPro:IPR009071 Pfam:PF00505 RGD:1564760 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 IPI:IPI00565616
            Ensembl:ENSRNOT00000022903 UCSC:RGD:1564760 ArrayExpress:D3Z9E3
            Uniprot:D3Z9E3
        Length = 376

 Score = 109 (43.4 bits), Expect = 1.4e-05, P = 1.4e-05
 Identities = 25/75 (33%), Positives = 37/75 (49%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             DSNAPK PL+ Y  FM + R+  +   P+      + +  G +W  +   EK  Y+ +A 
Sbjct:    99 DSNAPKSPLTGYVRFMNERREQLRAKRPE-VPFPEITRMLGNEWSKLPPEEKQRYLDEAD 157

Query:    98 NKKAEYELALEAYKK 112
               K  Y   LE Y+K
Sbjct:   158 RDKERYMKELEQYQK 172


>UNIPROTKB|O94900 [details] [associations]
            symbol:TOX "Thymocyte selection-associated high mobility
            group box protein TOX" species:9606 "Homo sapiens" [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
            GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 HOGENOM:HOG000230949 HOVERGEN:HBG051183
            eggNOG:NOG284736 EMBL:AB018351 EMBL:BC016665 IPI:IPI00006065
            RefSeq:NP_055544.1 UniGene:Hs.491805 UniGene:Hs.634856
            ProteinModelPortal:O94900 SMR:O94900 STRING:O94900
            PhosphoSite:O94900 PaxDb:O94900 PRIDE:O94900 DNASU:9760
            Ensembl:ENST00000361421 GeneID:9760 KEGG:hsa:9760 UCSC:uc003xtw.1
            CTD:9760 GeneCards:GC08M059717 HGNC:HGNC:18988 HPA:HPA018322
            MIM:606863 neXtProt:NX_O94900 PharmGKB:PA162406704
            InParanoid:O94900 OMA:CRNPPAQ OrthoDB:EOG44XJGQ GenomeRNAi:9760
            NextBio:36737 ArrayExpress:O94900 Bgee:O94900 CleanEx:HS_TOX
            Genevestigator:O94900 GermOnline:ENSG00000198846 Uniprot:O94900
        Length = 526

 Score = 111 (44.1 bits), Expect = 1.4e-05, P = 1.4e-05
 Identities = 25/77 (32%), Positives = 37/77 (48%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D N P++P+SAY +F  D + + K   P N +   + K     W  + E +K  Y +K  
Sbjct:   257 DPNEPQKPVSAYALFFRDTQAAIKGQNP-NATFGEVSKIVASMWDGLGEEQKQVYKKKTE 315

Query:    98 NKKAEYELALEAYKKQL 114
               K EY   L AY+  L
Sbjct:   316 AAKKEYLKQLAAYRASL 332


>MGI|MGI:2181659 [details] [associations]
            symbol:Tox "thymocyte selection-associated high mobility
            group box" species:10090 "Mus musculus" [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR009071 PROSITE:PS00353 MGI:MGI:2181659 Pfam:PF00505
            GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00560000076898
            HOGENOM:HOG000230949 HOVERGEN:HBG051183 eggNOG:NOG284736 CTD:9760
            OMA:CRNPPAQ OrthoDB:EOG44XJGQ EMBL:AF472514 EMBL:AK029694
            EMBL:AK038671 EMBL:AK051947 EMBL:BC080732 IPI:IPI00471452
            IPI:IPI00754510 RefSeq:NP_663757.3 UniGene:Mm.435828
            UniGene:Mm.488241 PDB:2CO9 PDBsum:2CO9 ProteinModelPortal:Q66JW3
            SMR:Q66JW3 PhosphoSite:Q66JW3 PaxDb:Q66JW3 PRIDE:Q66JW3
            Ensembl:ENSMUST00000039987 GeneID:252838 KEGG:mmu:252838
            UCSC:uc008rxt.1 InParanoid:Q66JW3 ChiTaRS:TOX
            EvolutionaryTrace:Q66JW3 NextBio:387345 Bgee:Q66JW3
            Genevestigator:Q66JW3 GermOnline:ENSMUSG00000041272 Uniprot:Q66JW3
        Length = 526

 Score = 111 (44.1 bits), Expect = 1.4e-05, P = 1.4e-05
 Identities = 25/77 (32%), Positives = 37/77 (48%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D N P++P+SAY +F  D + + K   P N +   + K     W  + E +K  Y +K  
Sbjct:   257 DPNEPQKPVSAYALFFRDTQAAIKGQNP-NATFGEVSKIVASMWDGLGEEQKQVYKKKTE 315

Query:    98 NKKAEYELALEAYKKQL 114
               K EY   L AY+  L
Sbjct:   316 AAKKEYLKQLAAYRASL 332


>RGD|620474 [details] [associations]
            symbol:Sox9 "SRY-box containing gene 9" species:10116 "Rattus
            norvegicus" [GO:0000976 "transcription regulatory region
            sequence-specific DNA binding" evidence=IDA] [GO:0001046 "core
            promoter sequence-specific DNA binding" evidence=ISO] [GO:0001077
            "RNA polymerase II core promoter proximal region sequence-specific
            DNA binding transcription factor activity involved in positive
            regulation of transcription" evidence=ISO;IDA] [GO:0001158
            "enhancer sequence-specific DNA binding" evidence=IDA] [GO:0001501
            "skeletal system development" evidence=ISO] [GO:0001502 "cartilage
            condensation" evidence=IMP] [GO:0001708 "cell fate specification"
            evidence=IMP] [GO:0001837 "epithelial to mesenchymal transition"
            evidence=IMP] [GO:0001894 "tissue homeostasis" evidence=IMP]
            [GO:0001934 "positive regulation of protein phosphorylation"
            evidence=IMP;IDA] [GO:0001942 "hair follicle development"
            evidence=IMP] [GO:0002053 "positive regulation of mesenchymal cell
            proliferation" evidence=IMP] [GO:0002063 "chondrocyte development"
            evidence=IMP] [GO:0002683 "negative regulation of immune system
            process" evidence=IMP] [GO:0003170 "heart valve development"
            evidence=IMP] [GO:0003179 "heart valve morphogenesis" evidence=IMP]
            [GO:0003188 "heart valve formation" evidence=IMP] [GO:0003203
            "endocardial cushion morphogenesis" evidence=IMP] [GO:0003413
            "chondrocyte differentiation involved in endochondral bone
            morphogenesis" evidence=ISO] [GO:0003415 "chondrocyte hypertrophy"
            evidence=IMP] [GO:0003677 "DNA binding" evidence=IDA] [GO:0003682
            "chromatin binding" evidence=ISO] [GO:0003700 "sequence-specific
            DNA binding transcription factor activity" evidence=ISO;IMP;IDA]
            [GO:0003705 "RNA polymerase II distal enhancer sequence-specific
            DNA binding transcription factor activity" evidence=ISO;IDA]
            [GO:0004672 "protein kinase activity" evidence=IMP] [GO:0005515
            "protein binding" evidence=IPI] [GO:0005634 "nucleus"
            evidence=ISO;IDA] [GO:0005667 "transcription factor complex"
            evidence=IPI] [GO:0006334 "nucleosome assembly" evidence=ISO]
            [GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=TAS]
            [GO:0006357 "regulation of transcription from RNA polymerase II
            promoter" evidence=IDA] [GO:0006461 "protein complex assembly"
            evidence=ISO] [GO:0007165 "signal transduction" evidence=IMP]
            [GO:0007173 "epidermal growth factor receptor signaling pathway"
            evidence=IDA] [GO:0007283 "spermatogenesis" evidence=IGI]
            [GO:0007507 "heart development" evidence=IMP] [GO:0008013
            "beta-catenin binding" evidence=IPI] [GO:0008284 "positive
            regulation of cell proliferation" evidence=ISO;IMP] [GO:0008285
            "negative regulation of cell proliferation" evidence=IMP]
            [GO:0008584 "male gonad development" evidence=ISO;IGI;IMP]
            [GO:0010564 "regulation of cell cycle process" evidence=ISO]
            [GO:0010628 "positive regulation of gene expression" evidence=IGI]
            [GO:0010634 "positive regulation of epithelial cell migration"
            evidence=ISO;ISS] [GO:0014032 "neural crest cell development"
            evidence=IMP] [GO:0014068 "positive regulation of
            phosphatidylinositol 3-kinase cascade" evidence=IMP] [GO:0019100
            "male germ-line sex determination" evidence=IMP] [GO:0019933
            "cAMP-mediated signaling" evidence=ISO] [GO:0030154 "cell
            differentiation" evidence=IMP] [GO:0030155 "regulation of cell
            adhesion" evidence=IMP] [GO:0030198 "extracellular matrix
            organization" evidence=IMP] [GO:0030238 "male sex determination"
            evidence=IGI] [GO:0030279 "negative regulation of ossification"
            evidence=IMP] [GO:0030502 "negative regulation of bone
            mineralization" evidence=IMP] [GO:0030858 "positive regulation of
            epithelial cell differentiation" evidence=IMP] [GO:0030916 "otic
            vesicle formation" evidence=IMP] [GO:0031018 "endocrine pancreas
            development" evidence=IMP] [GO:0032331 "negative regulation of
            chondrocyte differentiation" evidence=IMP] [GO:0032332 "positive
            regulation of chondrocyte differentiation" evidence=ISO;IMP;IDA]
            [GO:0034236 "protein kinase A catalytic subunit binding"
            evidence=ISO] [GO:0035019 "somatic stem cell maintenance"
            evidence=IMP] [GO:0035326 "enhancer binding" evidence=ISO;IDA]
            [GO:0035622 "intrahepatic bile duct development" evidence=IMP]
            [GO:0042127 "regulation of cell proliferation" evidence=IMP]
            [GO:0042981 "regulation of apoptotic process" evidence=IMP]
            [GO:0043066 "negative regulation of apoptotic process"
            evidence=ISO;IMP] [GO:0043234 "protein complex" evidence=ISO]
            [GO:0043491 "protein kinase B signaling cascade" evidence=IMP]
            [GO:0043565 "sequence-specific DNA binding" evidence=IDA]
            [GO:0044212 "transcription regulatory region DNA binding"
            evidence=IDA] [GO:0045165 "cell fate commitment" evidence=IGI]
            [GO:0045595 "regulation of cell differentiation" evidence=IMP]
            [GO:0045662 "negative regulation of myoblast differentiation"
            evidence=IDA] [GO:0045732 "positive regulation of protein catabolic
            process" evidence=IDA] [GO:0045892 "negative regulation of
            transcription, DNA-dependent" evidence=ISO;IMP;IDA] [GO:0045893
            "positive regulation of transcription, DNA-dependent"
            evidence=ISO;IMP;IDA] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter"
            evidence=ISO;IGI;IMP;IDA] [GO:0046533 "negative regulation of
            photoreceptor cell differentiation" evidence=IGI] [GO:0048709
            "oligodendrocyte differentiation" evidence=IMP] [GO:0050679
            "positive regulation of epithelial cell proliferation"
            evidence=IMP] [GO:0050680 "negative regulation of epithelial cell
            proliferation" evidence=IMP] [GO:0051216 "cartilage development"
            evidence=IEP;IMP;TAS] [GO:0060008 "Sertoli cell differentiation"
            evidence=IMP] [GO:0060009 "Sertoli cell development" evidence=IGI]
            [GO:0060018 "astrocyte fate commitment" evidence=IGI] [GO:0060041
            "retina development in camera-type eye" evidence=IGI] [GO:0060221
            "retinal rod cell differentiation" evidence=IGI] [GO:0060350
            "endochondral bone morphogenesis" evidence=IMP] [GO:0060512
            "prostate gland morphogenesis" evidence=IMP] [GO:0060517
            "epithelial cell proliferation involved in prostatic bud
            elongation" evidence=IMP] [GO:0060729 "intestinal epithelial
            structure maintenance" evidence=IMP] [GO:0060784 "regulation of
            cell proliferation involved in tissue homeostasis" evidence=IMP]
            [GO:0061036 "positive regulation of cartilage development"
            evidence=ISO;IDA] [GO:0061138 "morphogenesis of a branching
            epithelium" evidence=IGI] [GO:0070168 "negative regulation of
            biomineral tissue development" evidence=IMP] [GO:0070371 "ERK1 and
            ERK2 cascade" evidence=IDA] [GO:0071260 "cellular response to
            mechanical stimulus" evidence=IDA] [GO:0071300 "cellular response
            to retinoic acid" evidence=IDA] [GO:0071364 "cellular response to
            epidermal growth factor stimulus" evidence=IDA] [GO:0071504
            "cellular response to heparin" evidence=IDA] [GO:0071560 "cellular
            response to transforming growth factor beta stimulus" evidence=ISO]
            [GO:0072034 "renal vesicle induction" evidence=IMP] [GO:0072197
            "ureter morphogenesis" evidence=IGI] [GO:0072289 "metanephric
            nephron tubule formation" evidence=IGI] [GO:0090090 "negative
            regulation of canonical Wnt receptor signaling pathway"
            evidence=IDA] [GO:0090103 "cochlea morphogenesis" evidence=IMP]
            [GO:0090184 "positive regulation of kidney development"
            evidence=IGI] [GO:0090190 "positive regulation of branching
            involved in ureteric bud morphogenesis" evidence=IMP] [GO:2000020
            "positive regulation of male gonad development" evidence=ISO]
            [GO:2000138 "positive regulation of cell proliferation involved in
            heart morphogenesis" evidence=IMP] [GO:2000741 "positive regulation
            of mesenchymal stem cell differentiation" evidence=ISO]
            InterPro:IPR009071 Pfam:PF00505 RGD:620474 GO:GO:0003700
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0051216 InterPro:IPR022151 Pfam:PF12444 HSSP:P48432
            IPI:IPI00392284 EMBL:AB073720 UniGene:Rn.95086
            ProteinModelPortal:Q91WY3 STRING:Q91WY3 HOVERGEN:HBG098066
            Genevestigator:Q91WY3 Uniprot:Q91WY3
        Length = 164

 Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 21/76 (27%), Positives = 43/76 (56%)

Query:    40 NAP--KRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             N P  KRP++A+ ++ +  R+   + +P   + A + K  G+ W+ ++E+EK P+V++A 
Sbjct:    86 NKPHVKRPMNAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLNESEKRPFVEEAE 144

Query:    98 NKKAEYELALEAYKKQ 113
               + ++      YK Q
Sbjct:   145 RLRVQHRKDHPDYKYQ 160


>SGD|S000002160 [details] [associations]
            symbol:NHP10 "Protein related to mammalian high mobility
            group proteins" species:4932 "Saccharomyces cerevisiae" [GO:0005634
            "nucleus" evidence=IEA;IDA] [GO:0042766 "nucleosome mobilization"
            evidence=IDA] [GO:0031011 "Ino80 complex" evidence=IDA] [GO:0006302
            "double-strand break repair" evidence=IGI;IMP] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0045027 "DNA end binding" evidence=IDA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0000404 "loop DNA binding" evidence=IDA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            InterPro:IPR009071 PROSITE:PS00353 SGD:S000002160 Pfam:PF00505
            GO:GO:0006355 EMBL:BK006938 GO:GO:0006351 eggNOG:COG5648
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0031011 GO:GO:0006302 GO:GO:0042766 EMBL:Z48008 GO:GO:0000404
            GO:GO:0045027 PIR:S50980 RefSeq:NP_010282.3 RefSeq:NP_010286.3
            ProteinModelPortal:Q03435 SMR:Q03435 DIP:DIP-1387N IntAct:Q03435
            MINT:MINT-388714 STRING:Q03435 PaxDb:Q03435 PeptideAtlas:Q03435
            EnsemblFungi:YDL002C GeneID:851562 GeneID:851566 KEGG:sce:YDL002C
            KEGG:sce:YDR003W CYGD:YDL002c HOGENOM:HOG000001026 KO:K11680
            OMA:AYLLFCE OrthoDB:EOG4RV61X NextBio:968998 Genevestigator:Q03435
            GermOnline:YDL002C Uniprot:Q03435
        Length = 203

 Score = 103 (41.3 bits), Expect = 1.7e-05, P = 1.7e-05
 Identities = 22/79 (27%), Positives = 41/79 (51%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D N PKRP +AY ++ E      KE    N S+        + WK+++E ++ PY +   
Sbjct:    90 DPNMPKRPTNAYLLYCE----MNKERIRQNGSLDVTRDLA-EGWKNLNEQDRKPYYKLYS 144

Query:    98 NKKAEYELALEAYKKQLND 116
               +  Y++ +E Y K++++
Sbjct:   145 EDRERYQMEMEIYNKKISN 163


>RGD|3759 [details] [associations]
            symbol:Sry "sex determining region Y" species:10116 "Rattus
          norvegicus" [GO:0000122 "negative regulation of transcription from
          RNA polymerase II promoter" evidence=ISO] [GO:0003677 "DNA binding"
          evidence=ISO] [GO:0003705 "RNA polymerase II distal enhancer
          sequence-specific DNA binding transcription factor activity"
          evidence=ISO] [GO:0005516 "calmodulin binding" evidence=IEA]
          [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm"
          evidence=ISO;IDA] [GO:0006351 "transcription, DNA-dependent"
          evidence=IEA] [GO:0007530 "sex determination" evidence=ISO]
          [GO:0007548 "sex differentiation" evidence=IEA] [GO:0008134
          "transcription factor binding" evidence=ISO] [GO:0008301 "DNA
          binding, bending" evidence=ISO] [GO:0008584 "male gonad development"
          evidence=ISO] [GO:0010629 "negative regulation of gene expression"
          evidence=ISO] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0019899
          "enzyme binding" evidence=IPI] [GO:0030154 "cell differentiation"
          evidence=IEA] [GO:0030238 "male sex determination" evidence=ISO;IEP]
          [GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO]
          [GO:0043565 "sequence-specific DNA binding" evidence=IMP] [GO:0045893
          "positive regulation of transcription, DNA-dependent" evidence=ISO]
          [GO:0045944 "positive regulation of transcription from RNA polymerase
          II promoter" evidence=IDA] [GO:2000020 "positive regulation of male
          gonad development" evidence=ISO] InterPro:IPR009071 Pfam:PF00505
          RGD:3759 GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0016607
          GO:GO:0043565 GO:GO:0045944 GO:GO:0006351 Gene3D:1.10.30.10
          SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0007548
          GO:GO:0030238 HOVERGEN:HBG008712 InterPro:IPR027151
          PANTHER:PTHR10270:SF84 EMBL:X89730 EMBL:AJ222688 EMBL:Z26907
          IPI:IPI00551785 PIR:S58088 ProteinModelPortal:P36394 SMR:P36394
          PRIDE:P36394 Genevestigator:P36394 Uniprot:P36394
        Length = 121

 Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
 Identities = 22/71 (30%), Positives = 38/71 (53%)

Query:    43 KRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAE 102
             KRP++A+ ++    R    +  P  ++ + + K  G +WKS++EAEK P+ Q+A   K  
Sbjct:     6 KRPMNAFMVWSRGERHKLAQQNPSMQN-SEISKQLGYQWKSLTEAEKRPFFQEAQRLKTL 64

Query:   103 YELALEAYKKQ 113
             +      YK Q
Sbjct:    65 HREKYPNYKYQ 75


>UNIPROTKB|O42342 [details] [associations]
            symbol:sox7 "Transcription factor Sox-7" species:8355
            "Xenopus laevis" [GO:0001706 "endoderm formation" evidence=IMP]
            [GO:0005634 "nucleus" evidence=ISS] [GO:0007507 "heart development"
            evidence=IMP] [GO:0030178 "negative regulation of Wnt receptor
            signaling pathway" evidence=IMP] [GO:0043565 "sequence-specific DNA
            binding" evidence=IDA] [GO:0044212 "transcription regulatory region
            DNA binding" evidence=IDA] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=IMP]
            [GO:0048793 "pronephros development" evidence=ISS]
            InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634 GO:GO:0007507
            GO:GO:0030154 GO:GO:0043565 GO:GO:0045944 GO:GO:0006351
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0044212 GO:GO:0030178 GO:GO:0048793 GO:GO:0001706 HSSP:P48431
            InterPro:IPR021934 Pfam:PF12067 PROSITE:PS51516 KO:K09270 CTD:83595
            EMBL:D83649 RefSeq:NP_001079337.1 UniGene:Xl.1241
            ProteinModelPortal:O42342 SMR:O42342 GeneID:378665 KEGG:xla:378665
            Xenbase:XB-GENE-865761 Uniprot:O42342
        Length = 362

 Score = 107 (42.7 bits), Expect = 2.2e-05, P = 2.2e-05
 Identities = 22/69 (31%), Positives = 40/69 (57%)

Query:    43 KRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAE 102
             +RP++A+ ++ +D RK      PD  + A + K  G+ WK++S A+K PYV++A   + +
Sbjct:    43 RRPMNAFMVWAKDERKRLAVQNPDLHN-AELSKMLGKSWKALSPAQKRPYVEEAERLRVQ 101

Query:   103 YELALEAYK 111
             +      YK
Sbjct:   102 HMQDYPNYK 110


>UNIPROTKB|Q28GD5 [details] [associations]
            symbol:sox7 "Transcription factor Sox-7" species:8364
            "Xenopus (Silurana) tropicalis" [GO:0001706 "endoderm formation"
            evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0007507
            "heart development" evidence=ISS] [GO:0043565 "sequence-specific
            DNA binding" evidence=ISS] [GO:0044212 "transcription regulatory
            region DNA binding" evidence=ISS] [GO:0045944 "positive regulation
            of transcription from RNA polymerase II promoter" evidence=ISS]
            [GO:0048793 "pronephros development" evidence=IMP]
            InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634 GO:GO:0007507
            GO:GO:0043565 GO:GO:0045944 GO:GO:0006351 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0044212
            GO:GO:0001570 GO:GO:0048793 GO:GO:0001706 eggNOG:NOG242943
            InterPro:IPR021934 Pfam:PF12067 PROSITE:PS51516
            GeneTree:ENSGT00670000097649 KO:K09270 HOGENOM:HOG000069999
            CTD:83595 OrthoDB:EOG447FTC EMBL:CR761431 EMBL:BC170859
            RefSeq:NP_001016326.1 UniGene:Str.66419 ProteinModelPortal:Q28GD5
            SMR:Q28GD5 STRING:Q28GD5 Ensembl:ENSXETT00000001530 GeneID:549080
            KEGG:xtr:549080 Xenbase:XB-GENE-488067 OMA:SFECSAG Bgee:Q28GD5
            Uniprot:Q28GD5
        Length = 362

 Score = 107 (42.7 bits), Expect = 2.2e-05, P = 2.2e-05
 Identities = 22/69 (31%), Positives = 40/69 (57%)

Query:    43 KRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAE 102
             +RP++A+ ++ +D RK      PD  + A + K  G+ WK++S A+K PYV++A   + +
Sbjct:    43 RRPMNAFMVWAKDERKRLAVQNPDLHN-AELSKMLGKSWKALSPAQKRPYVEEAERLRVQ 101

Query:   103 YELALEAYK 111
             +      YK
Sbjct:   102 HMQDYPNYK 110


>UNIPROTKB|Q90ZH8 [details] [associations]
            symbol:sox18-a "Transcription factor Sox-18A" species:8355
            "Xenopus laevis" [GO:0005634 "nucleus" evidence=ISS] [GO:0008150
            "biological_process" evidence=ND] [GO:0043565 "sequence-specific
            DNA binding" evidence=IDA] InterPro:IPR009071 Pfam:PF00505
            GO:GO:0005634 GO:GO:0006355 GO:GO:0043565 GO:GO:0006351
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            HSSP:P48431 InterPro:IPR021934 Pfam:PF12067 PROSITE:PS51516
            KO:K09270 EMBL:AB052692 EMBL:BC169575 RefSeq:NP_001082102.1
            UniGene:Xl.11958 ProteinModelPortal:Q90ZH8 SMR:Q90ZH8 GeneID:398226
            KEGG:xla:398226 CTD:398226 Xenbase:XB-GENE-864957 Uniprot:Q90ZH8
        Length = 363

 Score = 107 (42.7 bits), Expect = 2.2e-05, P = 2.2e-05
 Identities = 19/61 (31%), Positives = 38/61 (62%)

Query:    43 KRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAE 102
             +RP++A+ ++ +D RK   +  PD  + A + K  GQ WK+++  EK P+V++A   + +
Sbjct:    69 RRPMNAFMVWAKDERKRLAQQNPDLHN-AVLSKMLGQSWKNLTSVEKRPFVEEAERLRVQ 127

Query:   103 Y 103
             +
Sbjct:   128 H 128


>UNIPROTKB|A4FUB3 [details] [associations]
            symbol:SOX5 "SOX5 protein" species:9913 "Bos taurus"
            [GO:2000741 "positive regulation of mesenchymal stem cell
            differentiation" evidence=IEA] [GO:0071560 "cellular response to
            transforming growth factor beta stimulus" evidence=IEA] [GO:0061036
            "positive regulation of cartilage development" evidence=IEA]
            [GO:0060164 "regulation of timing of neuron differentiation"
            evidence=IEA] [GO:0051216 "cartilage development" evidence=IEA]
            [GO:0048709 "oligodendrocyte differentiation" evidence=IEA]
            [GO:0046982 "protein heterodimerization activity" evidence=IEA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IEA] [GO:0045892 "negative
            regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0045165 "cell fate commitment" evidence=IEA] [GO:0044212
            "transcription regulatory region DNA binding" evidence=IEA]
            [GO:0032332 "positive regulation of chondrocyte differentiation"
            evidence=IEA] [GO:0021953 "central nervous system neuron
            differentiation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=IEA] [GO:0001701 "in utero embryonic
            development" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
            GO:GO:0005634 GO:GO:0045892 GO:GO:0071560 GO:GO:0001701
            GO:GO:0045944 GO:GO:0003700 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0044212 GO:GO:0032332
            GO:GO:0051216 GO:GO:0048709 GO:GO:0045165 GO:GO:0061036
            GO:GO:0060164 GO:GO:0021953 GeneTree:ENSGT00690000101789
            HOVERGEN:HBG003915 KO:K09269 HOGENOM:HOG000056455 CTD:6660
            eggNOG:NOG253815 OMA:PSEHSSM OrthoDB:EOG42BX84 GO:GO:2000741
            EMBL:DAAA02014069 EMBL:DAAA02014070 EMBL:DAAA02014071
            EMBL:DAAA02014072 EMBL:DAAA02014073 EMBL:DAAA02014074 EMBL:BC114658
            IPI:IPI00704971 RefSeq:NP_001076940.1 UniGene:Bt.32918 SMR:A4FUB3
            STRING:A4FUB3 Ensembl:ENSBTAT00000030260 GeneID:533829
            KEGG:bta:533829 InParanoid:A4FUB3 NextBio:20876164 Uniprot:A4FUB3
        Length = 728

 Score = 111 (44.1 bits), Expect = 2.2e-05, P = 2.2e-05
 Identities = 24/74 (32%), Positives = 43/74 (58%)

Query:    39 SNAP--KRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKA 96
             SN P  KRP++A+ ++ +D R+   ++FPD  + + + K  G +WK+M+  EK PY ++ 
Sbjct:   516 SNEPHIKRPMNAFMVWAKDERRKILQAFPDMHN-SNISKILGSRWKAMTNLEKQPYYEEQ 574

Query:    97 LNKKAEYELALEAY 110
                  ++   LE Y
Sbjct:   575 ARLSKQH---LEKY 585


>UNIPROTKB|P35711 [details] [associations]
            symbol:SOX5 "Transcription factor SOX-5" species:9606 "Homo
            sapiens" [GO:0001701 "in utero embryonic development" evidence=IEA]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=IEA] [GO:0021953 "central nervous system neuron
            differentiation" evidence=IEA] [GO:0044212 "transcription
            regulatory region DNA binding" evidence=IEA] [GO:0045165 "cell fate
            commitment" evidence=IEA] [GO:0045892 "negative regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=IEA] [GO:0046982 "protein heterodimerization activity"
            evidence=IEA] [GO:0048709 "oligodendrocyte differentiation"
            evidence=IEA] [GO:0051216 "cartilage development" evidence=IEA]
            [GO:0060164 "regulation of timing of neuron differentiation"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0032332
            "positive regulation of chondrocyte differentiation" evidence=IDA]
            [GO:0061036 "positive regulation of cartilage development"
            evidence=IDA] [GO:0071560 "cellular response to transforming growth
            factor beta stimulus" evidence=IDA] [GO:2000741 "positive
            regulation of mesenchymal stem cell differentiation" evidence=IDA]
            [GO:0006366 "transcription from RNA polymerase II promoter"
            evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
            InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634 GO:GO:0045892
            GO:GO:0071560 GO:GO:0001701 GO:GO:0045944 GO:GO:0003700
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0044212 GO:GO:0006366 GO:GO:0032332 GO:GO:0051216
            GO:GO:0048709 GO:GO:0045165 GO:GO:0061036 GO:GO:0060164
            GO:GO:0021953 HOVERGEN:HBG003915 KO:K09269 EMBL:AB081588
            EMBL:AB081589 EMBL:AB081590 EMBL:AB081591 EMBL:AK074317
            EMBL:AK098610 EMBL:AK303970 EMBL:AC087244 EMBL:AC087260
            EMBL:AC087319 EMBL:AC092864 EMBL:BC029220 EMBL:BC035227
            EMBL:BC047665 EMBL:BC060773 EMBL:S83308 EMBL:X65662 IPI:IPI00166143
            IPI:IPI00171247 IPI:IPI00216317 IPI:IPI00221270 IPI:IPI01010805
            PIR:S22939 RefSeq:NP_001248343.1 RefSeq:NP_001248344.1
            RefSeq:NP_008871.3 RefSeq:NP_694534.1 RefSeq:NP_821078.1
            UniGene:Hs.657542 ProteinModelPortal:P35711 SMR:P35711
            IntAct:P35711 MINT:MINT-1198407 STRING:P35711 PhosphoSite:P35711
            DMDM:30179883 PRIDE:P35711 DNASU:6660 Ensembl:ENST00000309359
            Ensembl:ENST00000381381 Ensembl:ENST00000396007
            Ensembl:ENST00000451604 Ensembl:ENST00000541536
            Ensembl:ENST00000545921 Ensembl:ENST00000546136 GeneID:6660
            KEGG:hsa:6660 UCSC:uc001rfv.3 UCSC:uc001rfw.3 UCSC:uc001rfy.3
            CTD:6660 GeneCards:GC12M023585 HGNC:HGNC:11201 MIM:604975
            neXtProt:NX_P35711 PharmGKB:PA36038 eggNOG:NOG253815
            InParanoid:P35711 OMA:PSEHSSM OrthoDB:EOG42BX84 PhylomeDB:P35711
            ChiTaRS:SOX5 GenomeRNAi:6660 NextBio:25963 ArrayExpress:P35711
            Bgee:P35711 Genevestigator:P35711 GermOnline:ENSG00000134532
            GO:GO:2000741 Uniprot:P35711
        Length = 763

 Score = 111 (44.1 bits), Expect = 2.3e-05, P = 2.3e-05
 Identities = 24/74 (32%), Positives = 43/74 (58%)

Query:    39 SNAP--KRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKA 96
             SN P  KRP++A+ ++ +D R+   ++FPD  + + + K  G +WK+M+  EK PY ++ 
Sbjct:   551 SNEPHIKRPMNAFMVWAKDERRKILQAFPDMHN-SNISKILGSRWKAMTNLEKQPYYEEQ 609

Query:    97 LNKKAEYELALEAY 110
                  ++   LE Y
Sbjct:   610 ARLSKQH---LEKY 620


>MGI|MGI:98367 [details] [associations]
            symbol:Sox5 "SRY-box containing gene 5" species:10090 "Mus
            musculus" [GO:0001701 "in utero embryonic development"
            evidence=IMP] [GO:0003677 "DNA binding" evidence=IDA] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IGI;IDA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0021953 "central
            nervous system neuron differentiation" evidence=IGI] [GO:0032332
            "positive regulation of chondrocyte differentiation"
            evidence=ISO;IDA] [GO:0044212 "transcription regulatory region DNA
            binding" evidence=IDA] [GO:0045165 "cell fate commitment"
            evidence=IGI] [GO:0045892 "negative regulation of transcription,
            DNA-dependent" evidence=IDA] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=IGI;IDA]
            [GO:0046982 "protein heterodimerization activity" evidence=IPI]
            [GO:0048709 "oligodendrocyte differentiation" evidence=IMP]
            [GO:0051216 "cartilage development" evidence=IGI] [GO:0060164
            "regulation of timing of neuron differentiation" evidence=IMP]
            [GO:0061036 "positive regulation of cartilage development"
            evidence=ISO] [GO:0071560 "cellular response to transforming growth
            factor beta stimulus" evidence=ISO] [GO:2000741 "positive
            regulation of mesenchymal stem cell differentiation" evidence=ISO]
            InterPro:IPR009071 MGI:MGI:98367 Pfam:PF00505 GO:GO:0005634
            GO:GO:0045892 GO:GO:0006355 GO:GO:0003677 GO:GO:0001701
            GO:GO:0045944 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0044212
            GO:GO:0032332 GO:GO:0051216 GO:GO:0048709 GO:GO:0045165
            GO:GO:0060164 GO:GO:0021953 HOVERGEN:HBG003915 KO:K09269
            HOGENOM:HOG000056455 CTD:6660 eggNOG:NOG253815 OrthoDB:EOG42BX84
            EMBL:X65657 EMBL:X65658 EMBL:AB006330 EMBL:AJ010604 IPI:IPI00128018
            IPI:IPI00466410 IPI:IPI00467353 PIR:S25195 RefSeq:NP_001230092.1
            UniGene:Mm.1752 PDB:1I11 PDBsum:1I11 ProteinModelPortal:P35710
            SMR:P35710 IntAct:P35710 STRING:P35710 PhosphoSite:P35710
            PRIDE:P35710 Ensembl:ENSMUST00000111748 GeneID:20678 KEGG:mmu:20678
            InParanoid:P35710 EvolutionaryTrace:P35710 NextBio:299173
            Bgee:P35710 CleanEx:MM_SOX5 Genevestigator:P35710
            GermOnline:ENSMUSG00000041540 Uniprot:P35710
        Length = 763

 Score = 111 (44.1 bits), Expect = 2.3e-05, P = 2.3e-05
 Identities = 24/74 (32%), Positives = 43/74 (58%)

Query:    39 SNAP--KRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKA 96
             SN P  KRP++A+ ++ +D R+   ++FPD  + + + K  G +WK+M+  EK PY ++ 
Sbjct:   551 SNEPHIKRPMNAFMVWAKDERRKILQAFPDMHN-SNISKILGSRWKAMTNLEKQPYYEEQ 609

Query:    97 LNKKAEYELALEAY 110
                  ++   LE Y
Sbjct:   610 ARLSKQH---LEKY 620


>UNIPROTKB|C9JQA7 [details] [associations]
            symbol:HMG20B "SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin subfamily E member
            1-related" species:9606 "Homo sapiens" [GO:0033234 "negative
            regulation of protein sumoylation" evidence=IEA] [GO:0045666
            "positive regulation of neuron differentiation" evidence=IEA]
            [GO:0046982 "protein heterodimerization activity" evidence=IEA]
            InterPro:IPR009071 Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AC005786 HOGENOM:HOG000247029
            HGNC:HGNC:5002 ChiTaRS:HMG20B EMBL:AC116968 IPI:IPI00878211
            ProteinModelPortal:C9JQA7 SMR:C9JQA7 STRING:C9JQA7
            Ensembl:ENST00000453933 ArrayExpress:C9JQA7 Bgee:C9JQA7
            Uniprot:C9JQA7
        Length = 142

 Score = 99 (39.9 bits), Expect = 2.4e-05, P = 2.4e-05
 Identities = 21/73 (28%), Positives = 36/73 (49%)

Query:    40 NAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNK 99
             N PK P++ Y  F+ + R+  +   PD      + K  G +W  +   EK  Y+ +A  +
Sbjct:    68 NGPKAPVTGYVRFLNERREQIRTRHPD-LPFPEITKMLGAEWSKLQPTEKQRYLDEAERE 126

Query:   100 KAEYELALEAYKK 112
             K +Y   L AY++
Sbjct:   127 KQQYMKELRAYQQ 139


>UNIPROTKB|P35713 [details] [associations]
            symbol:SOX18 "Transcription factor SOX-18" species:9606
            "Homo sapiens" [GO:0001701 "in utero embryonic development"
            evidence=IEA] [GO:0001942 "hair follicle development" evidence=IEA]
            [GO:0048469 "cell maturation" evidence=IEA] [GO:0048866 "stem cell
            fate specification" evidence=IEA] [GO:0072091 "regulation of stem
            cell proliferation" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=IDA] [GO:0044212
            "transcription regulatory region DNA binding" evidence=IDA]
            [GO:0061028 "establishment of endothelial barrier" evidence=IMP]
            [GO:0001525 "angiogenesis" evidence=IEP] [GO:0043534 "blood vessel
            endothelial cell migration" evidence=IEP] [GO:0001946
            "lymphangiogenesis" evidence=IMP] [GO:0022405 "hair cycle process"
            evidence=IMP] [GO:0000122 "negative regulation of transcription
            from RNA polymerase II promoter" evidence=IDA] [GO:0000978 "RNA
            polymerase II core promoter proximal region sequence-specific DNA
            binding" evidence=IDA] [GO:0000790 "nuclear chromatin"
            evidence=IDA] [GO:0001077 "RNA polymerase II core promoter proximal
            region sequence-specific DNA binding transcription factor activity
            involved in positive regulation of transcription" evidence=IDA]
            [GO:0042789 "mRNA transcription from RNA polymerase II promoter"
            evidence=IDA] [GO:0003151 "outflow tract morphogenesis"
            evidence=ISS] [GO:0001947 "heart looping" evidence=ISS] [GO:0001570
            "vasculogenesis" evidence=ISS] [GO:0001944 "vasculature
            development" evidence=ISS] [GO:0035050 "embryonic heart tube
            development" evidence=ISS] [GO:0045892 "negative regulation of
            transcription, DNA-dependent" evidence=ISS] [GO:0045893 "positive
            regulation of transcription, DNA-dependent" evidence=ISS]
            [GO:0060214 "endocardium formation" evidence=ISS] [GO:0060836
            "lymphatic endothelial cell differentiation" evidence=ISS]
            [GO:0060956 "endocardial cell differentiation" evidence=ISS]
            InterPro:IPR009071 Pfam:PF00505 GO:GO:0001701 GO:GO:0001525
            GO:GO:0000978 GO:GO:0001077 GO:GO:0000122 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0000790
            GO:GO:0001942 GO:GO:0001946 GO:GO:0060836 GO:GO:0043534
            GO:GO:0001570 GO:GO:0001947 GO:GO:0003151 GO:GO:0042789
            GO:GO:0048469 GO:GO:0072091 GO:GO:0060956 GO:GO:0060214
            GO:GO:0061028 EMBL:AL355803 InterPro:IPR021934 Pfam:PF12067
            PROSITE:PS51516 KO:K09270 HOGENOM:HOG000069999 HOVERGEN:HBG000517
            GO:GO:0048866 EMBL:AJ243896 EMBL:AB033888 EMBL:AF270652
            EMBL:BC038590 EMBL:BC073971 EMBL:BC111390 EMBL:X65664
            IPI:IPI00020428 PIR:S22941 RefSeq:NP_060889.1 UniGene:Hs.8619
            ProteinModelPortal:P35713 SMR:P35713 IntAct:P35713 STRING:P35713
            PhosphoSite:P35713 DMDM:12644232 PaxDb:P35713 PRIDE:P35713
            Ensembl:ENST00000340356 GeneID:54345 KEGG:hsa:54345 UCSC:uc002yhs.3
            CTD:54345 GeneCards:GC20M062679 HGNC:HGNC:11194 MIM:601618
            MIM:607823 neXtProt:NX_P35713 Orphanet:69735 PharmGKB:PA36031
            eggNOG:NOG252325 InParanoid:P35713 OMA:YLNCSRT OrthoDB:EOG4KSPKP
            GenomeRNAi:54345 NextBio:56587 Bgee:P35713 CleanEx:HS_SOX18
            Genevestigator:P35713 GermOnline:ENSG00000203883 GO:GO:0022405
            Uniprot:P35713
        Length = 384

 Score = 107 (42.7 bits), Expect = 2.4e-05, P = 2.4e-05
 Identities = 20/66 (30%), Positives = 40/66 (60%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             D +  +RP++A+ ++ +D RK   +  PD  + A + K  G+ WK ++ AEK P+V++A 
Sbjct:    81 DESRIRRPMNAFMVWAKDERKRLAQQNPDLHN-AVLSKMLGKAWKELNAAEKRPFVEEAE 139

Query:    98 NKKAEY 103
               + ++
Sbjct:   140 RLRVQH 145


>UNIPROTKB|F1NAU5 [details] [associations]
            symbol:SOX6 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000122 "negative regulation of transcription from RNA
            polymerase II promoter" evidence=IEA] [GO:0000902 "cell
            morphogenesis" evidence=IEA] [GO:0001701 "in utero embryonic
            development" evidence=IEA] [GO:0003700 "sequence-specific DNA
            binding transcription factor activity" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0009791 "post-embryonic development"
            evidence=IEA] [GO:0016458 "gene silencing" evidence=IEA]
            [GO:0021778 "oligodendrocyte cell fate specification" evidence=IEA]
            [GO:0032332 "positive regulation of chondrocyte differentiation"
            evidence=IEA] [GO:0035051 "cardiocyte differentiation"
            evidence=IEA] [GO:0042692 "muscle cell differentiation"
            evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
            evidence=IEA] [GO:0044212 "transcription regulatory region DNA
            binding" evidence=IEA] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=IEA]
            [GO:0046982 "protein heterodimerization activity" evidence=IEA]
            [GO:0048821 "erythrocyte development" evidence=IEA] [GO:0051216
            "cartilage development" evidence=IEA] [GO:0061036 "positive
            regulation of cartilage development" evidence=IEA] [GO:0071560
            "cellular response to transforming growth factor beta stimulus"
            evidence=IEA] [GO:2000741 "positive regulation of mesenchymal stem
            cell differentiation" evidence=IEA] InterPro:IPR009071
            InterPro:IPR027153 Pfam:PF00505 GO:GO:0005634 GO:GO:0071560
            GO:GO:0043565 GO:GO:0045944 GO:GO:0003700 GO:GO:0000122
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0044212 GO:GO:0032332 GO:GO:0045165 GO:GO:0016458
            GO:GO:0061036 GeneTree:ENSGT00690000101789 GO:GO:2000741
            OMA:FENLGPQ PANTHER:PTHR10270:SF89 EMBL:AADN02030483
            EMBL:AADN02030484 EMBL:AADN02030485 EMBL:AADN02030486
            EMBL:AADN02030487 EMBL:AADN02030488 EMBL:AADN02030489
            EMBL:AADN02030490 EMBL:AADN02030491 EMBL:AADN02030492
            EMBL:AADN02030493 EMBL:AADN02030494 EMBL:AADN02030495
            EMBL:AADN02030496 EMBL:AADN02030497 EMBL:AADN02030498
            EMBL:AADN02030499 EMBL:AADN02030500 EMBL:AADN02030501
            EMBL:AADN02030502 EMBL:AADN02030503 EMBL:AADN02030504
            EMBL:AADN02030505 IPI:IPI00597024 Ensembl:ENSGALT00000009804
            Uniprot:F1NAU5
        Length = 783

 Score = 111 (44.1 bits), Expect = 2.4e-05, P = 2.4e-05
 Identities = 20/53 (37%), Positives = 35/53 (66%)

Query:    43 KRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQK 95
             KRP++A+ ++ +D R+   ++FPD  + + + K  G +WKSMS  EK PY ++
Sbjct:   577 KRPMNAFMVWAKDERRKILQAFPDMHN-SNISKILGSRWKSMSNQEKQPYYEE 628


>RGD|1309000 [details] [associations]
            symbol:Sox6 "SRY (sex determining region Y)-box 6" species:10116
            "Rattus norvegicus" [GO:0000122 "negative regulation of
            transcription from RNA polymerase II promoter" evidence=ISO]
            [GO:0000902 "cell morphogenesis" evidence=ISO] [GO:0001701 "in
            utero embryonic development" evidence=ISO] [GO:0003677 "DNA
            binding" evidence=ISO] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=ISO] [GO:0005634 "nucleus"
            evidence=ISO] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=ISO] [GO:0009791 "post-embryonic
            development" evidence=ISO] [GO:0010468 "regulation of gene
            expression" evidence=ISO] [GO:0016458 "gene silencing"
            evidence=ISO] [GO:0021778 "oligodendrocyte cell fate specification"
            evidence=ISO] [GO:0030097 "hemopoiesis" evidence=ISO] [GO:0030218
            "erythrocyte differentiation" evidence=ISO] [GO:0032332 "positive
            regulation of chondrocyte differentiation" evidence=ISO]
            [GO:0035051 "cardiocyte differentiation" evidence=ISO] [GO:0042692
            "muscle cell differentiation" evidence=ISO] [GO:0043565
            "sequence-specific DNA binding" evidence=ISO] [GO:0044212
            "transcription regulatory region DNA binding" evidence=ISO]
            [GO:0045165 "cell fate commitment" evidence=ISO] [GO:0045892
            "negative regulation of transcription, DNA-dependent" evidence=ISO]
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=ISO] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=ISO] [GO:0046982 "protein
            heterodimerization activity" evidence=ISO] [GO:0048708 "astrocyte
            differentiation" evidence=IMP] [GO:0048709 "oligodendrocyte
            differentiation" evidence=ISO] [GO:0048821 "erythrocyte
            development" evidence=ISO] [GO:0051216 "cartilage development"
            evidence=ISO] [GO:0061036 "positive regulation of cartilage
            development" evidence=ISO] [GO:0071560 "cellular response to
            transforming growth factor beta stimulus" evidence=ISO] [GO:2000741
            "positive regulation of mesenchymal stem cell differentiation"
            evidence=ISO] InterPro:IPR009071 InterPro:IPR027153 Pfam:PF00505
            RGD:1309000 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0048708 HOVERGEN:HBG003915 KO:K09269
            HOGENOM:HOG000056455 eggNOG:NOG253815 CTD:55553
            PANTHER:PTHR10270:SF89 IPI:IPI00371181 EMBL:BC097403
            RefSeq:NP_001019922.1 UniGene:Rn.76073 ProteinModelPortal:Q4V8G3
            SMR:Q4V8G3 STRING:Q4V8G3 GeneID:293165 KEGG:rno:293165
            UCSC:RGD:1309000 NextBio:635493 Genevestigator:Q4V8G3
            Uniprot:Q4V8G3
        Length = 787

 Score = 111 (44.1 bits), Expect = 2.4e-05, P = 2.4e-05
 Identities = 20/53 (37%), Positives = 35/53 (66%)

Query:    43 KRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQK 95
             KRP++A+ ++ +D R+   ++FPD  + + + K  G +WKSMS  EK PY ++
Sbjct:   581 KRPMNAFMVWAKDERRKILQAFPDMHN-SNISKILGSRWKSMSNQEKQPYYEE 632


>UNIPROTKB|F1MAJ5 [details] [associations]
            symbol:Sox6 "Protein Sox6" species:10116 "Rattus
            norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0007275 "multicellular organismal development" evidence=IEA]
            InterPro:IPR009071 InterPro:IPR027153 Pfam:PF00505 RGD:1309000
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GeneTree:ENSGT00690000101789 PANTHER:PTHR10270:SF89 IPI:IPI00371181
            Ensembl:ENSRNOT00000048020 ArrayExpress:F1MAJ5 Uniprot:F1MAJ5
        Length = 789

 Score = 111 (44.1 bits), Expect = 2.4e-05, P = 2.4e-05
 Identities = 20/55 (36%), Positives = 36/55 (65%)

Query:    43 KRPLSAYFIFMEDFRKSFKESFPD--NKSVAAMGKAGGQKWKSMSEAEKAPYVQK 95
             KRP++A+ ++ +D R+   ++FPD  N +++ +    G +WKSMS  EK PY ++
Sbjct:   581 KRPMNAFMVWAKDERRKILQAFPDMHNSNISKI-LGNGSRWKSMSNQEKQPYYEE 634


>UNIPROTKB|F6UQM4 [details] [associations]
            symbol:SOX6 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0007275 "multicellular organismal
            development" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR027153
            Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GeneTree:ENSGT00690000101789 OMA:FENLGPQ
            PANTHER:PTHR10270:SF89 Ensembl:ENSCAFT00000013736 EMBL:AAEX03012946
            EMBL:AAEX03012947 EMBL:AAEX03012948 Uniprot:F6UQM4
        Length = 793

 Score = 111 (44.1 bits), Expect = 2.5e-05, P = 2.5e-05
 Identities = 20/53 (37%), Positives = 35/53 (66%)

Query:    43 KRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQK 95
             KRP++A+ ++ +D R+   ++FPD  + + + K  G +WKSMS  EK PY ++
Sbjct:   587 KRPMNAFMVWAKDERRKILQAFPDMHN-SNISKILGSRWKSMSNQEKQPYYEE 638


>MGI|MGI:98368 [details] [associations]
            symbol:Sox6 "SRY-box containing gene 6" species:10090 "Mus
            musculus" [GO:0000122 "negative regulation of transcription from
            RNA polymerase II promoter" evidence=IMP;IDA] [GO:0000902 "cell
            morphogenesis" evidence=IMP] [GO:0001701 "in utero embryonic
            development" evidence=IMP] [GO:0003677 "DNA binding" evidence=IDA]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=IGI;IDA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0005634 "nucleus" evidence=IC;IDA] [GO:0005667
            "transcription factor complex" evidence=IC] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=IDA]
            [GO:0007275 "multicellular organismal development" evidence=IEA]
            [GO:0009791 "post-embryonic development" evidence=IMP] [GO:0010468
            "regulation of gene expression" evidence=IMP] [GO:0016458 "gene
            silencing" evidence=IMP] [GO:0021778 "oligodendrocyte cell fate
            specification" evidence=IMP] [GO:0030097 "hemopoiesis"
            evidence=IMP] [GO:0030218 "erythrocyte differentiation"
            evidence=IMP] [GO:0032332 "positive regulation of chondrocyte
            differentiation" evidence=ISO;IDA] [GO:0035051 "cardiocyte
            differentiation" evidence=IDA] [GO:0042692 "muscle cell
            differentiation" evidence=IDA] [GO:0043565 "sequence-specific DNA
            binding" evidence=IDA] [GO:0044212 "transcription regulatory region
            DNA binding" evidence=IDA] [GO:0045165 "cell fate commitment"
            evidence=IGI] [GO:0045892 "negative regulation of transcription,
            DNA-dependent" evidence=IDA] [GO:0045893 "positive regulation of
            transcription, DNA-dependent" evidence=IDA] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=IGI] [GO:0046982 "protein heterodimerization activity"
            evidence=IPI] [GO:0048708 "astrocyte differentiation" evidence=ISO]
            [GO:0048709 "oligodendrocyte differentiation" evidence=IMP]
            [GO:0048821 "erythrocyte development" evidence=IMP] [GO:0051216
            "cartilage development" evidence=IGI] [GO:0061036 "positive
            regulation of cartilage development" evidence=ISO] [GO:0071560
            "cellular response to transforming growth factor beta stimulus"
            evidence=ISO] [GO:2000741 "positive regulation of mesenchymal stem
            cell differentiation" evidence=ISO] InterPro:IPR009071
            InterPro:IPR027153 MGI:MGI:98368 Pfam:PF00505 GO:GO:0071560
            GO:GO:0043565 GO:GO:0001701 GO:GO:0045944 GO:GO:0003700
            GO:GO:0006351 GO:GO:0005667 GO:GO:0000122 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0044212
            GO:GO:0042692 GO:GO:0009791 GO:GO:0000902 GO:GO:0032332
            GO:GO:0051216 GO:GO:0048821 GO:GO:0016458 GO:GO:0035051
            GO:GO:0061036 GO:GO:0021778 HOVERGEN:HBG003915 KO:K09269
            HOGENOM:HOG000056455 eggNOG:NOG253815 GO:GO:2000741 CTD:55553
            OMA:FENLGPQ ChiTaRS:SOX6 PANTHER:PTHR10270:SF89 EMBL:U32614
            EMBL:D61689 EMBL:AJ010605 EMBL:X65659 IPI:IPI00620986
            IPI:IPI00623688 PIR:S22944 PIR:S59121 RefSeq:NP_035575.1
            UniGene:Mm.323365 ProteinModelPortal:P40645 SMR:P40645
            IntAct:P40645 STRING:P40645 PhosphoSite:P40645 PRIDE:P40645
            Ensembl:ENSMUST00000072804 Ensembl:ENSMUST00000166207 GeneID:20679
            KEGG:mmu:20679 UCSC:uc009jin.1 InParanoid:P40645 OrthoDB:EOG4N8R45
            NextBio:299177 Bgee:P40645 CleanEx:MM_SOX6 Genevestigator:P40645
            GermOnline:ENSMUSG00000051910 Uniprot:P40645
        Length = 827

 Score = 111 (44.1 bits), Expect = 2.6e-05, P = 2.6e-05
 Identities = 20/53 (37%), Positives = 35/53 (66%)

Query:    43 KRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQK 95
             KRP++A+ ++ +D R+   ++FPD  + + + K  G +WKSMS  EK PY ++
Sbjct:   621 KRPMNAFMVWAKDERRKILQAFPDMHN-SNISKILGSRWKSMSNQEKQPYYEE 672


>UNIPROTKB|P35712 [details] [associations]
            symbol:SOX6 "Transcription factor SOX-6" species:9606 "Homo
            sapiens" [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0000122 "negative regulation of transcription from RNA
            polymerase II promoter" evidence=IEA] [GO:0000902 "cell
            morphogenesis" evidence=IEA] [GO:0001701 "in utero embryonic
            development" evidence=IEA] [GO:0009791 "post-embryonic development"
            evidence=IEA] [GO:0016458 "gene silencing" evidence=IEA]
            [GO:0021778 "oligodendrocyte cell fate specification" evidence=IEA]
            [GO:0035051 "cardiocyte differentiation" evidence=IEA] [GO:0042692
            "muscle cell differentiation" evidence=IEA] [GO:0043565
            "sequence-specific DNA binding" evidence=IEA] [GO:0044212
            "transcription regulatory region DNA binding" evidence=IEA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IEA] [GO:0046982 "protein
            heterodimerization activity" evidence=IEA] [GO:0048821 "erythrocyte
            development" evidence=IEA] [GO:0051216 "cartilage development"
            evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=NAS] [GO:0005634 "nucleus"
            evidence=IDA;NAS] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=NAS] [GO:0007517 "muscle
            organ development" evidence=NAS] [GO:0003677 "DNA binding"
            evidence=NAS] [GO:0032332 "positive regulation of chondrocyte
            differentiation" evidence=IDA] [GO:0061036 "positive regulation of
            cartilage development" evidence=IDA] [GO:0071560 "cellular response
            to transforming growth factor beta stimulus" evidence=IDA]
            [GO:2000741 "positive regulation of mesenchymal stem cell
            differentiation" evidence=IDA] [GO:0005515 "protein binding"
            evidence=IPI] InterPro:IPR009071 InterPro:IPR027153 Pfam:PF00505
            GO:GO:0005634 EMBL:CH471064 GO:GO:0071560 GO:GO:0003677
            GO:GO:0043565 GO:GO:0001701 GO:GO:0045944 GO:GO:0003700
            GO:GO:0006351 GO:GO:0000122 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0044212 GO:GO:0042692
            GO:GO:0009791 GO:GO:0007517 GO:GO:0000902 GO:GO:0032332
            GO:GO:0051216 GO:GO:0048821 GO:GO:0016458 GO:GO:0035051
            GO:GO:0061036 GO:GO:0021778 HOVERGEN:HBG003915 KO:K09269
            HOGENOM:HOG000056455 eggNOG:NOG253815 GO:GO:2000741 EMBL:AF309034
            EMBL:AF309476 EMBL:AF309471 EMBL:AF309472 EMBL:AF309473
            EMBL:AF309474 EMBL:AF309475 EMBL:AL136780 EMBL:AC009869
            EMBL:AC013595 EMBL:AC027016 EMBL:AC068405 EMBL:AC103794
            EMBL:BC037866 EMBL:BC047064 EMBL:X65663 IPI:IPI00218631
            IPI:IPI00641980 IPI:IPI00872738 IPI:IPI00926649
            RefSeq:NP_001139283.1 RefSeq:NP_001139291.1 RefSeq:NP_059978.1
            RefSeq:NP_201583.2 UniGene:Hs.368226 ProteinModelPortal:P35712
            SMR:P35712 IntAct:P35712 STRING:P35712 PhosphoSite:P35712
            DMDM:215274178 PaxDb:P35712 PRIDE:P35712 DNASU:55553
            Ensembl:ENST00000316399 Ensembl:ENST00000352083
            Ensembl:ENST00000396356 Ensembl:ENST00000527619
            Ensembl:ENST00000528252 Ensembl:ENST00000528429 GeneID:55553
            KEGG:hsa:55553 UCSC:uc001mmd.3 UCSC:uc001mme.3 UCSC:uc001mmf.3
            UCSC:uc001mmg.3 CTD:55553 GeneCards:GC11M015949 HGNC:HGNC:16421
            HPA:HPA001923 HPA:HPA003908 MIM:607257 neXtProt:NX_P35712
            PharmGKB:PA38137 InParanoid:P35712 OMA:FENLGPQ ChiTaRS:SOX6
            GenomeRNAi:55553 NextBio:60012 ArrayExpress:P35712 Bgee:P35712
            CleanEx:HS_SOX6 Genevestigator:P35712 GermOnline:ENSG00000110693
            PANTHER:PTHR10270:SF89 Uniprot:P35712
        Length = 828

 Score = 111 (44.1 bits), Expect = 2.6e-05, P = 2.6e-05
 Identities = 20/53 (37%), Positives = 35/53 (66%)

Query:    43 KRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQK 95
             KRP++A+ ++ +D R+   ++FPD  + + + K  G +WKSMS  EK PY ++
Sbjct:   622 KRPMNAFMVWAKDERRKILQAFPDMHN-SNISKILGSRWKSMSNQEKQPYYEE 673


>UNIPROTKB|E2QTS7 [details] [associations]
            symbol:SOX6 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0007275 "multicellular organismal
            development" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR027153
            Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 PANTHER:PTHR10270:SF89 Ensembl:ENSCAFT00000013736
            Uniprot:E2QTS7
        Length = 829

 Score = 111 (44.1 bits), Expect = 2.6e-05, P = 2.6e-05
 Identities = 20/53 (37%), Positives = 35/53 (66%)

Query:    43 KRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQK 95
             KRP++A+ ++ +D R+   ++FPD  + + + K  G +WKSMS  EK PY ++
Sbjct:   623 KRPMNAFMVWAKDERRKILQAFPDMHN-SNISKILGSRWKSMSNQEKQPYYEE 674


>UNIPROTKB|E1BE01 [details] [associations]
            symbol:SOX6 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:2000741 "positive regulation of mesenchymal stem cell
            differentiation" evidence=IEA] [GO:0071560 "cellular response to
            transforming growth factor beta stimulus" evidence=IEA] [GO:0061036
            "positive regulation of cartilage development" evidence=IEA]
            [GO:0051216 "cartilage development" evidence=IEA] [GO:0048821
            "erythrocyte development" evidence=IEA] [GO:0046982 "protein
            heterodimerization activity" evidence=IEA] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=IEA] [GO:0044212 "transcription regulatory region DNA
            binding" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
            evidence=IEA] [GO:0042692 "muscle cell differentiation"
            evidence=IEA] [GO:0035051 "cardiocyte differentiation"
            evidence=IEA] [GO:0032332 "positive regulation of chondrocyte
            differentiation" evidence=IEA] [GO:0021778 "oligodendrocyte cell
            fate specification" evidence=IEA] [GO:0016458 "gene silencing"
            evidence=IEA] [GO:0009791 "post-embryonic development"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IEA] [GO:0001701 "in utero embryonic development"
            evidence=IEA] [GO:0000902 "cell morphogenesis" evidence=IEA]
            [GO:0000122 "negative regulation of transcription from RNA
            polymerase II promoter" evidence=IEA] InterPro:IPR009071
            InterPro:IPR027153 Pfam:PF00505 GO:GO:0005634 GO:GO:0071560
            GO:GO:0043565 GO:GO:0001701 GO:GO:0045944 GO:GO:0003700
            GO:GO:0000122 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0044212 GO:GO:0042692 GO:GO:0009791
            GO:GO:0000902 GO:GO:0032332 GO:GO:0051216 GO:GO:0048821
            GO:GO:0016458 GO:GO:0035051 GO:GO:0061036 GO:GO:0021778
            GeneTree:ENSGT00690000101789 KO:K09269 GO:GO:2000741 CTD:55553
            OMA:FENLGPQ PANTHER:PTHR10270:SF89 EMBL:DAAA02040602
            EMBL:DAAA02040603 EMBL:DAAA02040604 EMBL:DAAA02040605
            EMBL:DAAA02040606 EMBL:DAAA02040607 EMBL:DAAA02040608
            EMBL:DAAA02040609 EMBL:DAAA02040610 EMBL:DAAA02040611
            EMBL:DAAA02040612 IPI:IPI01000762 RefSeq:NP_001178347.1
            UniGene:Bt.62052 Ensembl:ENSBTAT00000061473 GeneID:534321
            KEGG:bta:534321 NextBio:20876354 Uniprot:E1BE01
        Length = 841

 Score = 111 (44.1 bits), Expect = 2.6e-05, P = 2.6e-05
 Identities = 20/53 (37%), Positives = 35/53 (66%)

Query:    43 KRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQK 95
             KRP++A+ ++ +D R+   ++FPD  + + + K  G +WKSMS  EK PY ++
Sbjct:   635 KRPMNAFMVWAKDERRKILQAFPDMHN-SNISKILGSRWKSMSNQEKQPYYEE 686


>UNIPROTKB|Q86G49 [details] [associations]
            symbol:egl-13 "Protein EGL-13, isoform b" species:6239
            "Caenorhabditis elegans" [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=ISS] InterPro:IPR009071 Pfam:PF00505
            GO:GO:0005634 GO:GO:0001708 GO:GO:0018991 GO:GO:0040011
            GO:GO:0003700 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0040035 GO:GO:0030163 GO:GO:0009653
            GO:GO:0040025 GO:GO:0045026 GeneTree:ENSGT00690000101789
            EMBL:FO081738 HSSP:P35710 UCSC:T22B7.1c.2 HOGENOM:HOG000020384
            NextBio:911168 ProteinModelPortal:Q86G49 SMR:Q86G49 STRING:Q86G49
            EnsemblMetazoa:T22B7.1b.1 EnsemblMetazoa:T22B7.1b.2
            WormBase:T22B7.1b ArrayExpress:Q86G49 Uniprot:Q86G49
        Length = 316

 Score = 105 (42.0 bits), Expect = 2.9e-05, P = 2.9e-05
 Identities = 19/56 (33%), Positives = 35/56 (62%)

Query:    40 NAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQK 95
             N  KRP++A+ ++  D R+   +++PD  + + + K  G +WK MS +EK PY ++
Sbjct:   173 NHIKRPMNAFMVWARDERRKILKAYPDMHN-SNISKILGSRWKGMSNSEKQPYYEE 227


>UNIPROTKB|H2L0M3 [details] [associations]
            symbol:egl-13 "Protein EGL-13, isoform d" species:6239
            "Caenorhabditis elegans" [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=ISS] InterPro:IPR009071 Pfam:PF00505
            GO:GO:0005634 GO:GO:0001708 GO:GO:0018991 GO:GO:0040011
            GO:GO:0003700 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0040035 GO:GO:0030163 GO:GO:0009653
            GO:GO:0040025 GO:GO:0045026 GeneTree:ENSGT00690000101789
            EMBL:FO081738 ProteinModelPortal:H2L0M3 SMR:H2L0M3
            EnsemblMetazoa:T22B7.1d WormBase:T22B7.1d Uniprot:H2L0M3
        Length = 319

 Score = 105 (42.0 bits), Expect = 2.9e-05, P = 2.9e-05
 Identities = 19/56 (33%), Positives = 35/56 (62%)

Query:    40 NAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQK 95
             N  KRP++A+ ++  D R+   +++PD  + + + K  G +WK MS +EK PY ++
Sbjct:   176 NHIKRPMNAFMVWARDERRKILKAYPDMHN-SNISKILGSRWKGMSNSEKQPYYEE 230


>UNIPROTKB|F1NNF2 [details] [associations]
            symbol:SOX5 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0001701 "in utero embryonic development" evidence=IEA]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0021953 "central nervous system neuron differentiation"
            evidence=IEA] [GO:0032332 "positive regulation of chondrocyte
            differentiation" evidence=IEA] [GO:0044212 "transcription
            regulatory region DNA binding" evidence=IEA] [GO:0045165 "cell fate
            commitment" evidence=IEA] [GO:0045892 "negative regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=IEA] [GO:0046982 "protein heterodimerization activity"
            evidence=IEA] [GO:0048709 "oligodendrocyte differentiation"
            evidence=IEA] [GO:0051216 "cartilage development" evidence=IEA]
            [GO:0060164 "regulation of timing of neuron differentiation"
            evidence=IEA] [GO:0061036 "positive regulation of cartilage
            development" evidence=IEA] [GO:0071560 "cellular response to
            transforming growth factor beta stimulus" evidence=IEA] [GO:2000741
            "positive regulation of mesenchymal stem cell differentiation"
            evidence=IEA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
            GO:GO:0045892 GO:GO:0071560 GO:GO:0045944 GO:GO:0003700
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0044212 GO:GO:0032332 GO:GO:0045165 GO:GO:0061036
            GeneTree:ENSGT00690000101789 OMA:PSEHSSM GO:GO:2000741
            EMBL:AADN02006625 EMBL:AADN02006626 EMBL:AADN02006627
            EMBL:AADN02006628 EMBL:AADN02006629 IPI:IPI00574856
            Ensembl:ENSGALT00000037410 ArrayExpress:F1NNF2 Uniprot:F1NNF2
        Length = 762

 Score = 110 (43.8 bits), Expect = 3.0e-05, P = 3.0e-05
 Identities = 24/76 (31%), Positives = 44/76 (57%)

Query:    39 SNAP--KRPLSAYFIFMEDFRKSFKESFPD--NKSVAAMGKAGGQKWKSMSEAEKAPYVQ 94
             SN P  KRP++A+ ++ +D R+   ++FPD  N +++ +    G +WK+M+  EK PY +
Sbjct:   549 SNEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKI--LAGSRWKAMTNLEKQPYYE 606

Query:    95 KALNKKAEYELALEAY 110
             +      ++   LE Y
Sbjct:   607 EQARLSKQH---LEKY 619


>UNIPROTKB|Q90ZH9 [details] [associations]
            symbol:sox17a-b "Transcription factor Sox-17-alpha-B"
            species:8355 "Xenopus laevis" [GO:0005634 "nucleus" evidence=ISS]
            [GO:0007442 "hindgut morphogenesis" evidence=IMP] [GO:0007492
            "endoderm development" evidence=IMP] [GO:0007494 "midgut
            development" evidence=IMP] [GO:0008013 "beta-catenin binding"
            evidence=ISS] [GO:0042074 "cell migration involved in gastrulation"
            evidence=IMP] [GO:0043565 "sequence-specific DNA binding"
            evidence=IDA] [GO:0045893 "positive regulation of transcription,
            DNA-dependent" evidence=ISS] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=ISS]
            InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634 GO:GO:0016055
            GO:GO:0043565 GO:GO:0045944 GO:GO:0006351 GO:GO:0007494
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0008013 GO:GO:0042074 GO:GO:0007492 GO:GO:0007442 HSSP:P48431
            KO:K04495 InterPro:IPR021934 Pfam:PF12067 PROSITE:PS51516
            EMBL:AB052691 EMBL:BC060350 RefSeq:NP_001083136.1 UniGene:Xl.11957
            ProteinModelPortal:Q90ZH9 SMR:Q90ZH9 GeneID:398765 KEGG:xla:398765
            CTD:398765 Xenbase:XB-GENE-6255435 Uniprot:Q90ZH9
        Length = 377

 Score = 106 (42.4 bits), Expect = 3.0e-05, P = 3.0e-05
 Identities = 20/61 (32%), Positives = 39/61 (63%)

Query:    43 KRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAE 102
             +RP++A+ ++ +D RK   +  PD  + A + K  G+ WK++S AEK P+V++A   + +
Sbjct:    59 RRPMNAFMVWAKDERKRLAQQNPDLHN-AELSKMLGKSWKALSLAEKRPFVEEAERLRVQ 117

Query:   103 Y 103
             +
Sbjct:   118 H 118


>UNIPROTKB|Q3KQ35 [details] [associations]
            symbol:sox17a-a "Transcription factor Sox-17-alpha-A"
            species:8355 "Xenopus laevis" [GO:0005634 "nucleus" evidence=IDA]
            [GO:0007440 "foregut morphogenesis" evidence=IMP] [GO:0007442
            "hindgut morphogenesis" evidence=IMP] [GO:0007492 "endoderm
            development" evidence=IMP] [GO:0007494 "midgut development"
            evidence=IMP] [GO:0008013 "beta-catenin binding" evidence=IDA]
            [GO:0008285 "negative regulation of cell proliferation"
            evidence=IDA] [GO:0042074 "cell migration involved in gastrulation"
            evidence=IMP] [GO:0043565 "sequence-specific DNA binding"
            evidence=ISS] [GO:0045893 "positive regulation of transcription,
            DNA-dependent" evidence=IMP] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=IMP]
            [GO:0090090 "negative regulation of canonical Wnt receptor
            signaling pathway" evidence=IDA] InterPro:IPR009071 Pfam:PF00505
            GO:GO:0005634 GO:GO:0008285 GO:GO:0016055 GO:GO:0043565
            GO:GO:0045944 GO:GO:0006351 GO:GO:0007494 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0090090
            GO:GO:0008013 GO:GO:0042074 GO:GO:0007492 GO:GO:0007440
            GO:GO:0007442 HSSP:P48431 EMBL:AJ001730 EMBL:BC106403 EMBL:AB052690
            RefSeq:NP_001081631.1 UniGene:Xl.3831 ProteinModelPortal:Q3KQ35
            SMR:Q3KQ35 GeneID:397966 KEGG:xla:397966 CTD:397966
            Xenbase:XB-GENE-865067 KO:K04495 InterPro:IPR021934 Pfam:PF12067
            PROSITE:PS51516 Uniprot:Q3KQ35
        Length = 380

 Score = 106 (42.4 bits), Expect = 3.1e-05, P = 3.1e-05
 Identities = 20/61 (32%), Positives = 39/61 (63%)

Query:    43 KRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAE 102
             +RP++A+ ++ +D RK   +  PD  + A + K  G+ WKS++ AEK P+V++A   + +
Sbjct:    62 RRPMNAFMVWAKDERKRLAQQNPDLHN-AELSKMLGKSWKSLTLAEKRPFVEEAERLRVQ 120

Query:   103 Y 103
             +
Sbjct:   121 H 121


>FB|FBgn0010278 [details] [associations]
            symbol:Ssrp "Structure specific recognition protein"
            species:7227 "Drosophila melanogaster" [GO:0000217 "DNA secondary
            structure binding" evidence=ISS] [GO:0003697 "single-stranded DNA
            binding" evidence=ISS;NAS] [GO:0005634 "nucleus" evidence=ISS;NAS]
            [GO:0003727 "single-stranded RNA binding" evidence=NAS] [GO:0005730
            "nucleolus" evidence=NAS] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0001672 "regulation of chromatin assembly or
            disassembly" evidence=IMP] [GO:0035101 "FACT complex"
            evidence=IDA;TAS] [GO:0043621 "protein self-association"
            evidence=IDA] [GO:0031492 "nucleosomal DNA binding" evidence=IDA]
            [GO:0051101 "regulation of DNA binding" evidence=IMP] [GO:0022008
            "neurogenesis" evidence=IMP] InterPro:IPR009071 InterPro:IPR000969
            PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531 EMBL:AE013599
            GO:GO:0005694 GO:GO:0022008 GO:GO:0006355 Gene3D:2.30.29.30
            InterPro:IPR011993 GO:GO:0006260 GO:GO:0006281 GO:GO:0006351
            GO:GO:0003723 GO:GO:0043621 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0051101 GO:GO:0031492
            GeneTree:ENSGT00700000104547 GO:GO:0001672 GO:GO:0035101
            InterPro:IPR013719 Pfam:PF08512 eggNOG:COG5165 KO:K09272
            InterPro:IPR024954 OMA:PVEVKKG EMBL:L08825 EMBL:X68408
            EMBL:BT004831 PIR:A48217 PIR:S33688 RefSeq:NP_523830.2
            UniGene:Dm.3383 PDB:1WXL PDBsum:1WXL ProteinModelPortal:Q05344
            SMR:Q05344 IntAct:Q05344 STRING:Q05344 PaxDb:Q05344
            EnsemblMetazoa:FBtr0072242 GeneID:37767 KEGG:dme:Dmel_CG4817
            CTD:37767 FlyBase:FBgn0010278 InParanoid:Q05344 OrthoDB:EOG40CFZ2
            PhylomeDB:Q05344 EvolutionaryTrace:Q05344 GenomeRNAi:37767
            NextBio:805310 Bgee:Q05344 GermOnline:CG4817 Uniprot:Q05344
        Length = 723

 Score = 109 (43.4 bits), Expect = 3.6e-05, P = 3.6e-05
 Identities = 27/86 (31%), Positives = 42/86 (48%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             DS  PKR  +A+ +++ D R+S K   P  K V  + K GG+ WK + +  K+ +   A 
Sbjct:   551 DSGKPKRATTAFMLWLNDTRESIKRENPGIK-VTEIAKKGGEMWKELKD--KSKWEDAAA 607

Query:    98 NKKAEYELALEAYKKQL---NDNGAG 120
               K  Y   +  YK +    +DN  G
Sbjct:   608 KDKQRYHDEMRNYKPEAGGDSDNEKG 633


>UNIPROTKB|Q5D144 [details] [associations]
            symbol:TFAM "Transcription factor A, mitochondrial"
            species:9823 "Sus scrofa" [GO:0008301 "DNA binding, bending"
            evidence=ISS] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=ISS] [GO:0006390
            "transcription from mitochondrial promoter" evidence=ISS]
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=ISS] [GO:0042645 "mitochondrial nucleoid" evidence=ISS]
            [GO:0003682 "chromatin binding" evidence=ISS] [GO:0006391
            "transcription initiation from mitochondrial promoter"
            evidence=ISS] [GO:0070363 "mitochondrial light strand promoter
            sense binding" evidence=ISS] [GO:0033108 "mitochondrial respiratory
            chain complex assembly" evidence=IEA] InterPro:IPR009071
            Pfam:PF00505 GO:GO:0045893 GO:GO:0003700 GO:GO:0003682
            GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0042645 GO:GO:0033108 Pfam:PF09011
            HSSP:P63159 GO:GO:0006391 CTD:7019 eggNOG:NOG297801
            HOGENOM:HOG000139423 HOVERGEN:HBG106674 KO:K11830 GO:GO:0070363
            OrthoDB:EOG4KKZ4D EMBL:AY923074 RefSeq:NP_001123683.1
            UniGene:Ssc.48086 UniGene:Ssc.78474 ProteinModelPortal:Q5D144
            STRING:Q5D144 GeneID:397279 KEGG:ssc:397279 Uniprot:Q5D144
        Length = 246

 Score = 102 (41.0 bits), Expect = 3.7e-05, P = 3.7e-05
 Identities = 25/77 (32%), Positives = 45/77 (58%)

Query:    42 PKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKA 101
             PKRP SAY IF+ +    F+E+  D  S   + K   + WK++S ++K  Y+Q A + K 
Sbjct:   155 PKRPRSAYNIFIAE---RFQEA-KDGPSQVKL-KTINENWKNLSSSQKQVYIQLAEDDKV 209

Query:   102 EYELALEAYKKQLNDNG 118
              Y   ++++++Q+ + G
Sbjct:   210 RYYNEMKSWEEQMVEVG 226


>ZFIN|ZDB-GENE-030131-8480 [details] [associations]
            symbol:hmgb1b "high-mobility group box 1b"
            species:7955 "Danio rerio" [GO:0005634 "nucleus" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
            InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
            ZFIN:ZDB-GENE-030131-8480 GO:GO:0005634 GO:GO:0003677
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            Pfam:PF09011 HOGENOM:HOG000197861 GeneTree:ENSGT00560000076717
            HOVERGEN:HBG009000 eggNOG:NOG320947 EMBL:AL929092 EMBL:BC146744
            IPI:IPI00854267 UniGene:Dr.47534 SMR:A6H8T4
            Ensembl:ENSDART00000108983 NextBio:20932104 Uniprot:A6H8T4
        Length = 165

 Score = 99 (39.9 bits), Expect = 4.3e-05, P = 4.3e-05
 Identities = 23/86 (26%), Positives = 42/86 (48%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESFPD-NKSVAAMGKAGGQKWKSMSEAEKAPYVQKA 96
             D   P+  +S+Y  F++  R+  K+  P+ + + +   K   ++WK+MS  EK  +   A
Sbjct:     4 DPRKPRGKMSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 63

Query:    97 LNKKAEYELALEAYKKQLNDNGAGVS 122
                K  YE  ++ Y     +N  G+S
Sbjct:    64 KQDKVRYEREMKNYIPPKGEN-PGLS 88


>UNIPROTKB|Q4PIT4 [details] [associations]
            symbol:egl-13 "Protein EGL-13, isoform c" species:6239
            "Caenorhabditis elegans" [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=ISS] InterPro:IPR009071 Pfam:PF00505
            GO:GO:0005634 GO:GO:0001708 GO:GO:0018991 GO:GO:0040011
            GO:GO:0003700 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0040035 GO:GO:0030163 GO:GO:0009653
            GO:GO:0040025 GO:GO:0045026 GeneTree:ENSGT00690000101789
            EMBL:FO081738 UniGene:Cel.8590 GeneID:180833 KEGG:cel:CELE_T22B7.1
            UCSC:T22B7.1c.2 CTD:180833 HOGENOM:HOG000020384 NextBio:911168
            RefSeq:NP_001024920.1 ProteinModelPortal:Q4PIT4 SMR:Q4PIT4
            STRING:Q4PIT4 EnsemblMetazoa:T22B7.1c.1 EnsemblMetazoa:T22B7.1c.2
            WormBase:T22B7.1c ArrayExpress:Q4PIT4 Uniprot:Q4PIT4
        Length = 422

 Score = 105 (42.0 bits), Expect = 4.6e-05, P = 4.6e-05
 Identities = 19/56 (33%), Positives = 35/56 (62%)

Query:    40 NAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQK 95
             N  KRP++A+ ++  D R+   +++PD  + + + K  G +WK MS +EK PY ++
Sbjct:   279 NHIKRPMNAFMVWARDERRKILKAYPDMHN-SNISKILGSRWKGMSNSEKQPYYEE 333


>UNIPROTKB|E2R4Z8 [details] [associations]
            symbol:HMG20B "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0046982 "protein heterodimerization activity"
            evidence=IEA] [GO:0045666 "positive regulation of neuron
            differentiation" evidence=IEA] [GO:0033234 "negative regulation of
            protein sumoylation" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GeneTree:ENSGT00700000104521 OMA:RLRKMNT EMBL:AAEX03012575
            EMBL:AAEX03012576 Ensembl:ENSCAFT00000030501 Uniprot:E2R4Z8
        Length = 316

 Score = 103 (41.3 bits), Expect = 4.7e-05, P = 4.7e-05
 Identities = 22/73 (30%), Positives = 37/73 (50%)

Query:    40 NAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNK 99
             N PK P++ Y  F+ + R+  +   PD      + K  G +W  +  AEK  Y+ +A  +
Sbjct:    68 NGPKAPVTGYVRFLNERREQIRTRHPD-LPFPEITKMLGAEWSKLQPAEKQRYLDEAERE 126

Query:   100 KAEYELALEAYKK 112
             K +Y   L AY++
Sbjct:   127 KQQYMKELRAYQQ 139


>UNIPROTKB|Q32L68 [details] [associations]
            symbol:HMG20B "SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin subfamily E member
            1-related" species:9913 "Bos taurus" [GO:0005694 "chromosome"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0016568
            "chromatin modification" evidence=IEA] [GO:0007049 "cell cycle"
            evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505
            GO:GO:0005634 GO:GO:0005694 GO:GO:0006355 GO:GO:0003677
            GO:GO:0006351 GO:GO:0016568 eggNOG:COG5648 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0007049
            HOGENOM:HOG000247029 HOVERGEN:HBG059870 EMBL:BC109740
            IPI:IPI00703994 RefSeq:NP_001033143.1 UniGene:Bt.62699 HSSP:P48431
            ProteinModelPortal:Q32L68 SMR:Q32L68 STRING:Q32L68 PRIDE:Q32L68
            GeneID:507723 KEGG:bta:507723 CTD:10362 InParanoid:Q32L68
            OrthoDB:EOG4G7C05 NextBio:20868195 Uniprot:Q32L68
        Length = 317

 Score = 103 (41.3 bits), Expect = 4.8e-05, P = 4.8e-05
 Identities = 22/73 (30%), Positives = 37/73 (50%)

Query:    40 NAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNK 99
             N PK P++ Y  F+ + R+  +   PD      + K  G +W  +  AEK  Y+ +A  +
Sbjct:    68 NGPKAPVTGYVRFLNERREQIRTRHPD-LPFPEITKMLGAEWSKLQPAEKQRYLDEAERE 126

Query:   100 KAEYELALEAYKK 112
             K +Y   L AY++
Sbjct:   127 KQQYMKELRAYQQ 139


>MGI|MGI:103559 [details] [associations]
            symbol:Sox18 "SRY-box containing gene 18" species:10090 "Mus
            musculus" [GO:0000122 "negative regulation of transcription from
            RNA polymerase II promoter" evidence=ISO] [GO:0000790 "nuclear
            chromatin" evidence=ISO] [GO:0000978 "RNA polymerase II core
            promoter proximal region sequence-specific DNA binding"
            evidence=ISO] [GO:0001077 "RNA polymerase II core promoter proximal
            region sequence-specific DNA binding transcription factor activity
            involved in positive regulation of transcription" evidence=ISO]
            [GO:0001525 "angiogenesis" evidence=IGI] [GO:0001568 "blood vessel
            development" evidence=IMP] [GO:0001570 "vasculogenesis"
            evidence=IGI] [GO:0001701 "in utero embryonic development"
            evidence=IMP] [GO:0001942 "hair follicle development" evidence=IMP]
            [GO:0001944 "vasculature development" evidence=IMP] [GO:0001945
            "lymph vessel development" evidence=IMP] [GO:0001946
            "lymphangiogenesis" evidence=ISO;IMP] [GO:0003677 "DNA binding"
            evidence=IDA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IDA] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IC;IDA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IDA] [GO:0007507 "heart development" evidence=IMP]
            [GO:0022405 "hair cycle process" evidence=ISO] [GO:0035050
            "embryonic heart tube development" evidence=IGI] [GO:0042789 "mRNA
            transcription from RNA polymerase II promoter" evidence=ISO]
            [GO:0043565 "sequence-specific DNA binding" evidence=IDA]
            [GO:0044212 "transcription regulatory region DNA binding"
            evidence=ISO;IDA] [GO:0045892 "negative regulation of
            transcription, DNA-dependent" evidence=IDA] [GO:0045893 "positive
            regulation of transcription, DNA-dependent" evidence=IDA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=ISO] [GO:0048469 "cell maturation"
            evidence=IDA] [GO:0048866 "stem cell fate specification"
            evidence=IDA] [GO:0060214 "endocardium formation" evidence=IGI]
            [GO:0060836 "lymphatic endothelial cell differentiation"
            evidence=IMP] [GO:0060956 "endocardial cell differentiation"
            evidence=IGI] [GO:0061028 "establishment of endothelial barrier"
            evidence=ISO] [GO:0072091 "regulation of stem cell proliferation"
            evidence=IDA] InterPro:IPR009071 MGI:MGI:103559 Pfam:PF00505
            GO:GO:0005634 GO:GO:0045892 GO:GO:0045893 GO:GO:0043565
            GO:GO:0001701 GO:GO:0045944 GO:GO:0003700 GO:GO:0006351
            GO:GO:0001525 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0044212 GO:GO:0001942 GO:GO:0001946
            GO:GO:0060836 GO:GO:0043534 GO:GO:0001570 GO:GO:0048469
            GO:GO:0035050 GO:GO:0072091 GO:GO:0060956 GO:GO:0060214
            GO:GO:0061028 InterPro:IPR021934 Pfam:PF12067 PROSITE:PS51516
            GeneTree:ENSGT00670000097649 KO:K09270 HOGENOM:HOG000069999
            HOVERGEN:HBG000517 GO:GO:0048866 CTD:54345 eggNOG:NOG252325
            OMA:YLNCSRT OrthoDB:EOG4KSPKP EMBL:L35032 EMBL:AF288518
            EMBL:BC006612 EMBL:L29086 IPI:IPI00377924 RefSeq:NP_033262.2
            UniGene:Mm.264904 ProteinModelPortal:P43680 SMR:P43680
            STRING:P43680 PhosphoSite:P43680 PRIDE:P43680
            Ensembl:ENSMUST00000054491 GeneID:20672 KEGG:mmu:20672
            InParanoid:P43680 NextBio:299155 Bgee:P43680 CleanEx:MM_SOX18
            Genevestigator:P43680 GermOnline:ENSMUSG00000046470 Uniprot:P43680
        Length = 377

 Score = 104 (41.7 bits), Expect = 5.0e-05, P = 5.0e-05
 Identities = 19/61 (31%), Positives = 38/61 (62%)

Query:    43 KRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAE 102
             +RP++A+ ++ +D RK   +  PD  + A + K  G+ WK ++ AEK P+V++A   + +
Sbjct:    80 RRPMNAFMVWAKDERKRLAQQNPDLHN-AVLSKMLGKAWKELNTAEKRPFVEEAERLRVQ 138

Query:   103 Y 103
             +
Sbjct:   139 H 139


>RGD|1311718 [details] [associations]
            symbol:Sox18 "SRY (sex determining region Y)-box 18"
            species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation
            of transcription from RNA polymerase II promoter" evidence=ISO]
            [GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0000978 "RNA
            polymerase II core promoter proximal region sequence-specific DNA
            binding" evidence=ISO] [GO:0001077 "RNA polymerase II core promoter
            proximal region sequence-specific DNA binding transcription factor
            activity involved in positive regulation of transcription"
            evidence=ISO] [GO:0001525 "angiogenesis" evidence=IEA;ISO]
            [GO:0001568 "blood vessel development" evidence=ISO] [GO:0001570
            "vasculogenesis" evidence=IEA;ISO] [GO:0001701 "in utero embryonic
            development" evidence=IEA;ISO] [GO:0001942 "hair follicle
            development" evidence=IEA;ISO] [GO:0001944 "vasculature
            development" evidence=ISO] [GO:0001945 "lymph vessel development"
            evidence=ISO] [GO:0001946 "lymphangiogenesis" evidence=IEA;ISO]
            [GO:0003674 "molecular_function" evidence=ND] [GO:0003677 "DNA
            binding" evidence=ISO] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA;ISO] [GO:0005575
            "cellular_component" evidence=ND] [GO:0005634 "nucleus"
            evidence=IEA;ISO] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=ISO] [GO:0007507 "heart development"
            evidence=ISO] [GO:0008150 "biological_process" evidence=ND]
            [GO:0022405 "hair cycle process" evidence=ISO] [GO:0035050
            "embryonic heart tube development" evidence=IEA;ISO] [GO:0042789
            "mRNA transcription from RNA polymerase II promoter" evidence=ISO]
            [GO:0043534 "blood vessel endothelial cell migration"
            evidence=IEA;ISO] [GO:0043565 "sequence-specific DNA binding"
            evidence=IEA;ISO] [GO:0044212 "transcription regulatory region DNA
            binding" evidence=IEA;ISO] [GO:0045892 "negative regulation of
            transcription, DNA-dependent" evidence=IEA;ISO] [GO:0045893
            "positive regulation of transcription, DNA-dependent" evidence=ISO]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IEA;ISO] [GO:0048469 "cell
            maturation" evidence=IEA;ISO] [GO:0048866 "stem cell fate
            specification" evidence=IEA;ISO] [GO:0060214 "endocardium
            formation" evidence=IEA;ISO] [GO:0060836 "lymphatic endothelial
            cell differentiation" evidence=IEA;ISO] [GO:0060956 "endocardial
            cell differentiation" evidence=IEA;ISO] [GO:0061028 "establishment
            of endothelial barrier" evidence=IEA;ISO] [GO:0072091 "regulation
            of stem cell proliferation" evidence=IEA;ISO] InterPro:IPR009071
            Pfam:PF00505 RGD:1311718 GO:GO:0005634 GO:GO:0045892 GO:GO:0043565
            GO:GO:0001701 GO:GO:0045944 GO:GO:0003700 GO:GO:0001525
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0044212 GO:GO:0001942 GO:GO:0001946 GO:GO:0060836
            GO:GO:0043534 GO:GO:0001570 GO:GO:0048469 GO:GO:0035050
            GO:GO:0072091 GO:GO:0060956 GO:GO:0060214 GO:GO:0061028
            EMBL:CH474066 InterPro:IPR021934 Pfam:PF12067 PROSITE:PS51516
            GeneTree:ENSGT00670000097649 KO:K09270 HOGENOM:HOG000069999
            HOVERGEN:HBG000517 GO:GO:0048866 CTD:54345 eggNOG:NOG252325
            OMA:YLNCSRT OrthoDB:EOG4KSPKP EMBL:BC097973 IPI:IPI00211524
            RefSeq:NP_001019952.1 UniGene:Rn.22446 SMR:Q4V7E4
            Ensembl:ENSRNOT00000021790 GeneID:311723 KEGG:rno:311723
            UCSC:RGD:1311718 InParanoid:Q4V7E4 NextBio:664090
            Genevestigator:Q4V7E4 Uniprot:Q4V7E4
        Length = 377

 Score = 104 (41.7 bits), Expect = 5.0e-05, P = 5.0e-05
 Identities = 19/61 (31%), Positives = 38/61 (62%)

Query:    43 KRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAE 102
             +RP++A+ ++ +D RK   +  PD  + A + K  G+ WK ++ AEK P+V++A   + +
Sbjct:    80 RRPMNAFMVWAKDERKRLAQQNPDLHN-AVLSKMLGKAWKELNTAEKRPFVEEAERLRVQ 138

Query:   103 Y 103
             +
Sbjct:   139 H 139


>WB|WBGene00001182 [details] [associations]
            symbol:egl-13 species:6239 "Caenorhabditis elegans"
            [GO:0018991 "oviposition" evidence=IMP] [GO:0040035 "hermaphrodite
            genitalia development" evidence=IMP] [GO:0000003 "reproduction"
            evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0030163
            "protein catabolic process" evidence=IMP] [GO:0009653 "anatomical
            structure morphogenesis" evidence=IMP] [GO:0040025 "vulval
            development" evidence=IMP] [GO:0045026 "plasma membrane fusion"
            evidence=IMP] [GO:0005634 "nucleus" evidence=IDA] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=ISS] [GO:0001708 "cell fate specification" evidence=IMP]
            InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634 GO:GO:0001708
            GO:GO:0018991 GO:GO:0040011 GO:GO:0003700 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0040035
            GO:GO:0030163 GO:GO:0009653 GO:GO:0040025 GO:GO:0045026
            GeneTree:ENSGT00690000101789 eggNOG:NOG253815 EMBL:FO081738
            EMBL:AF097319 PIR:T25909 PIR:T43675 RefSeq:NP_001024918.1
            UniGene:Cel.8590 HSSP:P35710 ProteinModelPortal:Q23045 SMR:Q23045
            IntAct:Q23045 STRING:Q23045 PRIDE:Q23045 EnsemblMetazoa:T22B7.1a
            GeneID:180833 KEGG:cel:CELE_T22B7.1 UCSC:T22B7.1c.2 CTD:180833
            WormBase:T22B7.1a HOGENOM:HOG000020384 InParanoid:Q23045
            OMA:STISDHT NextBio:911168 ArrayExpress:Q23045 Uniprot:Q23045
        Length = 470

 Score = 105 (42.0 bits), Expect = 5.4e-05, P = 5.4e-05
 Identities = 19/56 (33%), Positives = 35/56 (62%)

Query:    40 NAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQK 95
             N  KRP++A+ ++  D R+   +++PD  + + + K  G +WK MS +EK PY ++
Sbjct:   327 NHIKRPMNAFMVWARDERRKILKAYPDMHN-SNISKILGSRWKGMSNSEKQPYYEE 381


>UNIPROTKB|Q23045 [details] [associations]
            symbol:egl-13 "Protein EGL-13, isoform a" species:6239
            "Caenorhabditis elegans" [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=ISS] InterPro:IPR009071 Pfam:PF00505
            GO:GO:0005634 GO:GO:0001708 GO:GO:0018991 GO:GO:0040011
            GO:GO:0003700 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0040035 GO:GO:0030163 GO:GO:0009653
            GO:GO:0040025 GO:GO:0045026 GeneTree:ENSGT00690000101789
            eggNOG:NOG253815 EMBL:FO081738 EMBL:AF097319 PIR:T25909 PIR:T43675
            RefSeq:NP_001024918.1 UniGene:Cel.8590 HSSP:P35710
            ProteinModelPortal:Q23045 SMR:Q23045 IntAct:Q23045 STRING:Q23045
            PRIDE:Q23045 EnsemblMetazoa:T22B7.1a GeneID:180833
            KEGG:cel:CELE_T22B7.1 UCSC:T22B7.1c.2 CTD:180833 WormBase:T22B7.1a
            HOGENOM:HOG000020384 InParanoid:Q23045 OMA:STISDHT NextBio:911168
            ArrayExpress:Q23045 Uniprot:Q23045
        Length = 470

 Score = 105 (42.0 bits), Expect = 5.4e-05, P = 5.4e-05
 Identities = 19/56 (33%), Positives = 35/56 (62%)

Query:    40 NAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQK 95
             N  KRP++A+ ++  D R+   +++PD  + + + K  G +WK MS +EK PY ++
Sbjct:   327 NHIKRPMNAFMVWARDERRKILKAYPDMHN-SNISKILGSRWKGMSNSEKQPYYEE 381


>UNIPROTKB|A4QNG3 [details] [associations]
            symbol:sox14 "Transcription factor Sox-14" species:8364
            "Xenopus (Silurana) tropicalis" [GO:0000122 "negative regulation of
            transcription from RNA polymerase II promoter" evidence=ISS]
            [GO:0007399 "nervous system development" evidence=ISS] [GO:0043565
            "sequence-specific DNA binding" evidence=ISS] [GO:0045892 "negative
            regulation of transcription, DNA-dependent" evidence=ISS]
            InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634 GO:GO:0007399
            GO:GO:0043565 GO:GO:0006351 GO:GO:0000122 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0021854
            GeneTree:ENSGT00690000101940 CTD:8403 eggNOG:NOG302715
            HOGENOM:HOG000231647 KO:K09267 OMA:LGCPSQH EMBL:AM922298
            EMBL:BC135637 RefSeq:NP_001093703.1 UniGene:Str.72434
            ProteinModelPortal:A4QNG3 SMR:A4QNG3 STRING:A4QNG3
            Ensembl:ENSXETT00000049107 GeneID:100101715 KEGG:xtr:100101715
            Xenbase:XB-GENE-485370 Bgee:A4QNG3 Uniprot:A4QNG3
        Length = 239

 Score = 100 (40.3 bits), Expect = 5.8e-05, P = 5.8e-05
 Identities = 21/69 (30%), Positives = 38/69 (55%)

Query:    43 KRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAE 102
             KRP++A+ ++    R+   +  P   + + + K  G +WK +SEAEK PY+ +A   +A+
Sbjct:     9 KRPMNAFMVWSRGQRRKMAQENPKMHN-SEISKRLGAEWKLLSEAEKRPYIDEAKRLRAQ 67

Query:   103 YELALEAYK 111
             +      YK
Sbjct:    68 HMKEHPDYK 76


>UNIPROTKB|B0ZTE2 [details] [associations]
            symbol:sox14 "Transcription factor Sox-14" species:8355
            "Xenopus laevis" [GO:0000122 "negative regulation of transcription
            from RNA polymerase II promoter" evidence=ISS] [GO:0007399 "nervous
            system development" evidence=IEP] [GO:0043565 "sequence-specific
            DNA binding" evidence=ISS] [GO:0045892 "negative regulation of
            transcription, DNA-dependent" evidence=ISS] InterPro:IPR009071
            Pfam:PF00505 GO:GO:0005634 GO:GO:0007399 GO:GO:0043565
            GO:GO:0006351 GO:GO:0000122 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 CTD:8403 KO:K09267 EMBL:EU403425
            RefSeq:NP_001165685.1 UniGene:Xl.85736 ProteinModelPortal:B0ZTE2
            SMR:B0ZTE2 GeneID:100337614 KEGG:xla:100337614
            Xenbase:XB-GENE-6458188 Uniprot:B0ZTE2
        Length = 239

 Score = 100 (40.3 bits), Expect = 5.8e-05, P = 5.8e-05
 Identities = 21/69 (30%), Positives = 38/69 (55%)

Query:    43 KRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAE 102
             KRP++A+ ++    R+   +  P   + + + K  G +WK +SEAEK PY+ +A   +A+
Sbjct:     9 KRPMNAFMVWSRGQRRKMAQENPKMHN-SEISKRLGAEWKLLSEAEKRPYIDEAKRLRAQ 67

Query:   103 YELALEAYK 111
             +      YK
Sbjct:    68 HMKEHPDYK 76


>UNIPROTKB|Q9W7R6 [details] [associations]
            symbol:SOX14 "Transcription factor SOX-14" species:9031
            "Gallus gallus" [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0000122 "negative regulation of transcription
            from RNA polymerase II promoter" evidence=IDA] [GO:0045892
            "negative regulation of transcription, DNA-dependent" evidence=IDA]
            [GO:0043565 "sequence-specific DNA binding" evidence=IDA]
            [GO:0005634 "nucleus" evidence=IC] InterPro:IPR009071 Pfam:PF00505
            GO:GO:0005634 GO:GO:0043565 GO:GO:0006351 GO:GO:0000122
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            EMBL:AB026622 EMBL:AF193760 EMBL:M86326 IPI:IPI00585113 PIR:I50196
            RefSeq:NP_990092.1 UniGene:Gga.286 ProteinModelPortal:Q9W7R6
            SMR:Q9W7R6 STRING:Q9W7R6 GeneID:395526 KEGG:gga:395526 CTD:8403
            eggNOG:NOG302715 HOGENOM:HOG000231647 HOVERGEN:HBG105618
            InParanoid:Q9W7R6 KO:K09267 OrthoDB:EOG47D9H0 NextBio:20815603
            InterPro:IPR022097 Pfam:PF12336 Uniprot:Q9W7R6
        Length = 240

 Score = 100 (40.3 bits), Expect = 5.8e-05, P = 5.8e-05
 Identities = 21/69 (30%), Positives = 38/69 (55%)

Query:    43 KRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAE 102
             KRP++A+ ++    R+   +  P   + + + K  G +WK +SEAEK PY+ +A   +A+
Sbjct:     9 KRPMNAFMVWSRGQRRKMAQENPKMHN-SEISKRLGAEWKLLSEAEKRPYIDEAKRLRAQ 67

Query:   103 YELALEAYK 111
             +      YK
Sbjct:    68 HMKEHPDYK 76


>UNIPROTKB|O95416 [details] [associations]
            symbol:SOX14 "Transcription factor SOX-14" species:9606
            "Homo sapiens" [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0007399
            "nervous system development" evidence=TAS] [GO:0005575
            "cellular_component" evidence=ND] [GO:0000122 "negative regulation
            of transcription from RNA polymerase II promoter" evidence=ISS]
            [GO:0045892 "negative regulation of transcription, DNA-dependent"
            evidence=ISS] [GO:0043565 "sequence-specific DNA binding"
            evidence=ISS] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
            GO:GO:0007399 EMBL:CH471052 GO:GO:0043565 GO:GO:0006351
            GO:GO:0000122 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 CTD:8403 eggNOG:NOG302715 HOGENOM:HOG000231647
            HOVERGEN:HBG105618 KO:K09267 OrthoDB:EOG47D9H0 InterPro:IPR022097
            Pfam:PF12336 OMA:LGCPSQH EMBL:AF107043 EMBL:AJ006230 EMBL:AF193436
            EMBL:AK314127 EMBL:BC106729 EMBL:BC106730 EMBL:AF032451
            IPI:IPI00030676 RefSeq:NP_004180.1 UniGene:Hs.248184
            ProteinModelPortal:O95416 SMR:O95416 STRING:O95416
            PhosphoSite:O95416 PRIDE:O95416 Ensembl:ENST00000306087 GeneID:8403
            KEGG:hsa:8403 UCSC:uc003erm.2 GeneCards:GC03P137483 HGNC:HGNC:11193
            MIM:604747 neXtProt:NX_O95416 PharmGKB:PA36030 InParanoid:O95416
            PhylomeDB:O95416 GenomeRNAi:8403 NextBio:31446 Bgee:O95416
            CleanEx:HS_SOX14 Genevestigator:O95416 GermOnline:ENSG00000168875
            Uniprot:O95416
        Length = 240

 Score = 100 (40.3 bits), Expect = 5.8e-05, P = 5.8e-05
 Identities = 21/69 (30%), Positives = 38/69 (55%)

Query:    43 KRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAE 102
             KRP++A+ ++    R+   +  P   + + + K  G +WK +SEAEK PY+ +A   +A+
Sbjct:     9 KRPMNAFMVWSRGQRRKMAQENPKMHN-SEISKRLGAEWKLLSEAEKRPYIDEAKRLRAQ 67

Query:   103 YELALEAYK 111
             +      YK
Sbjct:    68 HMKEHPDYK 76


>UNIPROTKB|P61259 [details] [associations]
            symbol:SOX14 "Transcription factor SOX-14" species:9541
            "Macaca fascicularis" [GO:0000122 "negative regulation of
            transcription from RNA polymerase II promoter" evidence=ISS]
            [GO:0043565 "sequence-specific DNA binding" evidence=ISS]
            [GO:0045892 "negative regulation of transcription, DNA-dependent"
            evidence=ISS] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
            GO:GO:0043565 GO:GO:0006351 GO:GO:0000122 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 HOVERGEN:HBG105618
            InterPro:IPR022097 Pfam:PF12336 EMBL:AB063098
            ProteinModelPortal:P61259 SMR:P61259 Uniprot:P61259
        Length = 240

 Score = 100 (40.3 bits), Expect = 5.8e-05, P = 5.8e-05
 Identities = 21/69 (30%), Positives = 38/69 (55%)

Query:    43 KRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAE 102
             KRP++A+ ++    R+   +  P   + + + K  G +WK +SEAEK PY+ +A   +A+
Sbjct:     9 KRPMNAFMVWSRGQRRKMAQENPKMHN-SEISKRLGAEWKLLSEAEKRPYIDEAKRLRAQ 67

Query:   103 YELALEAYK 111
             +      YK
Sbjct:    68 HMKEHPDYK 76


>MGI|MGI:98362 [details] [associations]
            symbol:Sox14 "SRY-box containing gene 14" species:10090 "Mus
            musculus" [GO:0003674 "molecular_function" evidence=ND] [GO:0003677
            "DNA binding" evidence=IEA] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0008150 "biological_process" evidence=ND] InterPro:IPR009071
            MGI:MGI:98362 Pfam:PF00505 GO:GO:0005634 GO:GO:0043565
            GO:GO:0006351 GO:GO:0000122 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 CTD:8403 eggNOG:NOG302715
            HOVERGEN:HBG105618 KO:K09267 OrthoDB:EOG47D9H0 OMA:LGCPSQH
            EMBL:AF193437 EMBL:AF193435 EMBL:AF182357 EMBL:Z18963
            IPI:IPI00929882 PIR:S30244 RefSeq:NP_035570.1 UniGene:Mm.261595
            UniGene:Mm.484077 ProteinModelPortal:Q04892 SMR:Q04892
            STRING:Q04892 PhosphoSite:Q04892 PRIDE:Q04892
            Ensembl:ENSMUST00000054819 GeneID:20669 KEGG:mmu:20669
            InParanoid:Q04892 NextBio:299141 Bgee:Q04892 CleanEx:MM_SOX14
            Genevestigator:Q04892 Uniprot:Q04892
        Length = 240

 Score = 100 (40.3 bits), Expect = 5.8e-05, P = 5.8e-05
 Identities = 21/69 (30%), Positives = 38/69 (55%)

Query:    43 KRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAE 102
             KRP++A+ ++    R+   +  P   + + + K  G +WK +SEAEK PY+ +A   +A+
Sbjct:     9 KRPMNAFMVWSRGQRRKMAQENPKMHN-SEISKRLGAEWKLLSEAEKRPYIDEAKRLRAQ 67

Query:   103 YELALEAYK 111
             +      YK
Sbjct:    68 HMKEHPDYK 76


>RGD|1309654 [details] [associations]
            symbol:Sox14 "SRY (sex determining region Y)-box 14"
            species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
            evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
            [GO:0008150 "biological_process" evidence=ND] InterPro:IPR009071
            Pfam:PF00505 RGD:1309654 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 EMBL:CH473954 CTD:8403
            HOVERGEN:HBG105618 KO:K09267 OMA:LGCPSQH EMBL:EU853677
            IPI:IPI00870866 RefSeq:NP_001100320.1 UniGene:Rn.141574 SMR:B7SZV3
            GeneID:300954 KEGG:rno:300954 UCSC:RGD:1309654 NextBio:647780
            Genevestigator:B7SZV3 Uniprot:B7SZV3
        Length = 240

 Score = 100 (40.3 bits), Expect = 5.8e-05, P = 5.8e-05
 Identities = 21/69 (30%), Positives = 38/69 (55%)

Query:    43 KRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAE 102
             KRP++A+ ++    R+   +  P   + + + K  G +WK +SEAEK PY+ +A   +A+
Sbjct:     9 KRPMNAFMVWSRGQRRKMAQENPKMHN-SEISKRLGAEWKLLSEAEKRPYIDEAKRLRAQ 67

Query:   103 YELALEAYK 111
             +      YK
Sbjct:    68 HMKEHPDYK 76


>MGI|MGI:98366 [details] [associations]
            symbol:Sox4 "SRY-box containing gene 4" species:10090 "Mus
            musculus" [GO:0000976 "transcription regulatory region
            sequence-specific DNA binding" evidence=IDA] [GO:0001046 "core
            promoter sequence-specific DNA binding" evidence=ISO;IDA]
            [GO:0001071 "nucleic acid binding transcription factor activity"
            evidence=ISO;IDA] [GO:0001077 "RNA polymerase II core promoter
            proximal region sequence-specific DNA binding transcription factor
            activity involved in positive regulation of transcription"
            evidence=ISO;IDA] [GO:0001105 "RNA polymerase II transcription
            coactivator activity" evidence=IDA] [GO:0001501 "skeletal system
            development" evidence=IMP] [GO:0001666 "response to hypoxia"
            evidence=ISO] [GO:0001841 "neural tube formation" evidence=IMP]
            [GO:0002328 "pro-B cell differentiation" evidence=IMP] [GO:0003183
            "mitral valve morphogenesis" evidence=IMP] [GO:0003211 "cardiac
            ventricle formation" evidence=IMP] [GO:0003215 "cardiac right
            ventricle morphogenesis" evidence=IMP] [GO:0003289 "atrial septum
            primum morphogenesis" evidence=IMP] [GO:0003357 "noradrenergic
            neuron differentiation" evidence=IMP] [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=ISO] [GO:0005634 "nucleus"
            evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=ISO]
            [GO:0006977 "DNA damage response, signal transduction by p53 class
            mediator resulting in cell cycle arrest" evidence=ISO] [GO:0007507
            "heart development" evidence=IMP] [GO:0008284 "positive regulation
            of cell proliferation" evidence=ISO;IMP] [GO:0008285 "negative
            regulation of cell proliferation" evidence=ISO] [GO:0014009 "glial
            cell proliferation" evidence=IMP] [GO:0021510 "spinal cord
            development" evidence=IMP] [GO:0021522 "spinal cord motor neuron
            differentiation" evidence=IMP] [GO:0021782 "glial cell development"
            evidence=IMP] [GO:0030177 "positive regulation of Wnt receptor
            signaling pathway" evidence=IMP] [GO:0030217 "T cell
            differentiation" evidence=IMP] [GO:0031018 "endocrine pancreas
            development" evidence=IMP] [GO:0031397 "negative regulation of
            protein ubiquitination" evidence=ISO] [GO:0031647 "regulation of
            protein stability" evidence=ISO] [GO:0032024 "positive regulation
            of insulin secretion" evidence=IMP] [GO:0035019 "somatic stem cell
            maintenance" evidence=IDA] [GO:0035910 "ascending aorta
            morphogenesis" evidence=IMP] [GO:0042593 "glucose homeostasis"
            evidence=IMP] [GO:0042769 "DNA damage response, detection of DNA
            damage" evidence=ISO] [GO:0043065 "positive regulation of apoptotic
            process" evidence=ISO] [GO:0043066 "negative regulation of
            apoptotic process" evidence=ISO] [GO:0045727 "positive regulation
            of translation" evidence=ISO] [GO:0045893 "positive regulation of
            transcription, DNA-dependent" evidence=ISO;IDA] [GO:0045944
            "positive regulation of transcription from RNA polymerase II
            promoter" evidence=ISO;IDA] [GO:0046826 "negative regulation of
            protein export from nucleus" evidence=ISO] [GO:0048485 "sympathetic
            nervous system development" evidence=IMP] [GO:0050821 "protein
            stabilization" evidence=ISO;IMP] [GO:0060070 "canonical Wnt
            receptor signaling pathway" evidence=IMP] [GO:0060174 "limb bud
            formation" evidence=IMP] [GO:0060412 "ventricular septum
            morphogenesis" evidence=IMP] [GO:0060548 "negative regulation of
            cell death" evidence=IMP] [GO:0060563 "neuroepithelial cell
            differentiation" evidence=IMP] [GO:0060993 "kidney morphogenesis"
            evidence=IMP] [GO:0071333 "cellular response to glucose stimulus"
            evidence=IMP] [GO:0090263 "positive regulation of canonical Wnt
            receptor signaling pathway" evidence=IDA] [GO:2000761 "positive
            regulation of N-terminal peptidyl-lysine acetylation" evidence=ISO]
            InterPro:IPR009071 MGI:MGI:98366 Pfam:PF00505 GO:GO:0005739
            GO:GO:0005634 GO:GO:0043066 GO:GO:0008285 GO:GO:0050821
            GO:GO:0006977 GO:GO:0071333 GO:GO:0008284 GO:GO:0032024
            GO:GO:0001077 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0043065 GO:GO:0021522 GO:GO:0014009
            GO:GO:0001501 GO:GO:0003289 GO:GO:0003183 GO:GO:0035019
            GO:GO:0060993 GO:GO:0031018 GO:GO:0045727 GO:GO:0090263
            GO:GO:0001105 GO:GO:0048485 GO:GO:0060070 GO:GO:0031397
            GO:GO:0060563 GO:GO:0046826 GO:GO:0001046 GO:GO:0030217
            GO:GO:0001841 EMBL:CH466561 GO:GO:0060412 GO:GO:0060174
            GO:GO:0042769 GO:GO:0002328 GO:GO:0003215 GO:GO:0021782
            GO:GO:0003357 GO:GO:0035910 GO:GO:0003211 HOVERGEN:HBG005040
            KO:K09268 InterPro:IPR017386 PIRSF:PIRSF038098 HOGENOM:HOG000231874
            GeneTree:ENSGT00690000101789 CTD:6659 OMA:AGCSPDG ChiTaRS:SOX4
            GO:GO:2000761 EMBL:X70298 EMBL:AL606511 EMBL:BC052736 EMBL:U70440
            IPI:IPI00320363 PIR:S37303 RefSeq:NP_033264.2 UniGene:Mm.240627
            UniGene:Mm.455819 PDB:3U2B PDBsum:3U2B ProteinModelPortal:Q06831
            SMR:Q06831 IntAct:Q06831 STRING:Q06831 PhosphoSite:Q06831
            PRIDE:Q06831 Ensembl:ENSMUST00000067230 GeneID:20677 KEGG:mmu:20677
            InParanoid:Q5SW95 NextBio:299169 Bgee:Q06831 CleanEx:MM_SOX4
            Genevestigator:Q06831 Uniprot:Q06831
        Length = 440

 Score = 104 (41.7 bits), Expect = 6.3e-05, P = 6.3e-05
 Identities = 26/84 (30%), Positives = 47/84 (55%)

Query:    43 KRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKA----LN 98
             KRP++A+ ++ +  R+   E  PD  + A + K  G++WK + +++K P++Q+A    L 
Sbjct:    60 KRPMNAFMVWSQIERRKIMEQSPDMHN-AEISKRLGKRWKLLKDSDKIPFIQEAERLRLK 118

Query:    99 KKAEY-ELALEAYKKQLNDN-GAG 120
               A+Y +      KK  + N GAG
Sbjct:   119 HMADYPDYKYRPRKKVKSGNAGAG 142


>RGD|1309488 [details] [associations]
            symbol:Sox4 "SRY (sex determining region Y)-box 4" species:10116
            "Rattus norvegicus" [GO:0000976 "transcription regulatory region
            sequence-specific DNA binding" evidence=ISO] [GO:0001046 "core
            promoter sequence-specific DNA binding" evidence=ISO] [GO:0001071
            "nucleic acid binding transcription factor activity" evidence=ISO]
            [GO:0001077 "RNA polymerase II core promoter proximal region
            sequence-specific DNA binding transcription factor activity
            involved in positive regulation of transcription" evidence=ISO]
            [GO:0001105 "RNA polymerase II transcription coactivator activity"
            evidence=ISO] [GO:0001501 "skeletal system development"
            evidence=ISO] [GO:0001666 "response to hypoxia" evidence=IDA]
            [GO:0001841 "neural tube formation" evidence=ISO] [GO:0002328
            "pro-B cell differentiation" evidence=ISO] [GO:0003183 "mitral
            valve morphogenesis" evidence=ISO] [GO:0003211 "cardiac ventricle
            formation" evidence=ISO] [GO:0003215 "cardiac right ventricle
            morphogenesis" evidence=ISO] [GO:0003289 "atrial septum primum
            morphogenesis" evidence=ISO] [GO:0003357 "noradrenergic neuron
            differentiation" evidence=ISO] [GO:0003700 "sequence-specific DNA
            binding transcription factor activity" evidence=ISO] [GO:0005634
            "nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
            [GO:0005739 "mitochondrion" evidence=ISO] [GO:0006355 "regulation
            of transcription, DNA-dependent" evidence=ISO] [GO:0006977 "DNA
            damage response, signal transduction by p53 class mediator
            resulting in cell cycle arrest" evidence=ISO] [GO:0007507 "heart
            development" evidence=ISO] [GO:0008284 "positive regulation of cell
            proliferation" evidence=ISO] [GO:0008285 "negative regulation of
            cell proliferation" evidence=ISO] [GO:0014009 "glial cell
            proliferation" evidence=ISO] [GO:0021510 "spinal cord development"
            evidence=ISO] [GO:0021522 "spinal cord motor neuron
            differentiation" evidence=ISO] [GO:0021782 "glial cell development"
            evidence=ISO] [GO:0030177 "positive regulation of Wnt receptor
            signaling pathway" evidence=ISO] [GO:0030217 "T cell
            differentiation" evidence=ISO] [GO:0031018 "endocrine pancreas
            development" evidence=ISO] [GO:0031397 "negative regulation of
            protein ubiquitination" evidence=ISO] [GO:0031647 "regulation of
            protein stability" evidence=ISO] [GO:0032024 "positive regulation
            of insulin secretion" evidence=ISO] [GO:0035019 "somatic stem cell
            maintenance" evidence=ISO] [GO:0035910 "ascending aorta
            morphogenesis" evidence=ISO] [GO:0042593 "glucose homeostasis"
            evidence=ISO] [GO:0042769 "DNA damage response, detection of DNA
            damage" evidence=ISO] [GO:0043065 "positive regulation of apoptotic
            process" evidence=ISO] [GO:0043066 "negative regulation of
            apoptotic process" evidence=ISO] [GO:0045727 "positive regulation
            of translation" evidence=ISO] [GO:0045893 "positive regulation of
            transcription, DNA-dependent" evidence=ISO] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=ISO] [GO:0046826 "negative regulation of protein export
            from nucleus" evidence=ISO] [GO:0048485 "sympathetic nervous system
            development" evidence=ISO] [GO:0050821 "protein stabilization"
            evidence=ISO] [GO:0060070 "canonical Wnt receptor signaling
            pathway" evidence=ISO] [GO:0060174 "limb bud formation"
            evidence=ISO] [GO:0060412 "ventricular septum morphogenesis"
            evidence=ISO] [GO:0060548 "negative regulation of cell death"
            evidence=ISO] [GO:0060563 "neuroepithelial cell differentiation"
            evidence=ISO] [GO:0060993 "kidney morphogenesis" evidence=ISO]
            [GO:0071333 "cellular response to glucose stimulus" evidence=ISO]
            [GO:0090263 "positive regulation of canonical Wnt receptor
            signaling pathway" evidence=ISO] [GO:2000761 "positive regulation
            of N-terminal peptidyl-lysine acetylation" evidence=ISO]
            [GO:0005730 "nucleolus" evidence=ISO] NCBI:NP_001258134
            REFSEQ:NM_001271205
        Length = 440

 Score = 104 (41.7 bits), Expect = 6.3e-05, P = 6.3e-05
 Identities = 26/84 (30%), Positives = 47/84 (55%)

Query:    43 KRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKA----LN 98
             KRP++A+ ++ +  R+   E  PD  + A + K  G++WK + +++K P++Q+A    L 
Sbjct:    60 KRPMNAFMVWSQIERRKIMEQSPDMHN-AEISKRLGKRWKLLKDSDKIPFIQEAERLRLK 118

Query:    99 KKAEY-ELALEAYKKQLNDN-GAG 120
               A+Y +      KK  + N GAG
Sbjct:   119 HMADYPDYKYRPRKKVKSGNTGAG 142


>UNIPROTKB|P57073 [details] [associations]
            symbol:SOX8 "Transcription factor SOX-8" species:9606 "Homo
            sapiens" [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=IEA] [GO:0008134 "transcription factor binding"
            evidence=IEA] [GO:0046533 "negative regulation of photoreceptor
            cell differentiation" evidence=IEA] [GO:0048469 "cell maturation"
            evidence=IEA] [GO:0060018 "astrocyte fate commitment" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=NAS] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=IDA] [GO:0005634 "nucleus" evidence=IC;IDA] [GO:0001755
            "neural crest cell migration" evidence=ISS] [GO:0014015 "positive
            regulation of gliogenesis" evidence=ISS] [GO:0043066 "negative
            regulation of apoptotic process" evidence=ISS] [GO:0048484 "enteric
            nervous system development" evidence=ISS] [GO:0005737 "cytoplasm"
            evidence=ISS] [GO:0001649 "osteoblast differentiation"
            evidence=ISS] [GO:0001701 "in utero embryonic development"
            evidence=ISS] [GO:0007283 "spermatogenesis" evidence=ISS]
            [GO:0007422 "peripheral nervous system development" evidence=ISS]
            [GO:0010817 "regulation of hormone levels" evidence=ISS]
            [GO:0033690 "positive regulation of osteoblast proliferation"
            evidence=ISS] [GO:0045444 "fat cell differentiation" evidence=ISS]
            [GO:0045165 "cell fate commitment" evidence=ISS] [GO:0060009
            "Sertoli cell development" evidence=ISS] [GO:0048709
            "oligodendrocyte differentiation" evidence=ISS] [GO:0060041 "retina
            development in camera-type eye" evidence=ISS] [GO:0060221 "retinal
            rod cell differentiation" evidence=ISS] [GO:0061138 "morphogenesis
            of a branching epithelium" evidence=ISS] [GO:0072197 "ureter
            morphogenesis" evidence=ISS] [GO:0072289 "metanephric nephron
            tubule formation" evidence=ISS] [GO:0000979 "RNA polymerase II core
            promoter sequence-specific DNA binding" evidence=ISS] [GO:0045892
            "negative regulation of transcription, DNA-dependent" evidence=ISS]
            [GO:0072034 "renal vesicle induction" evidence=ISS] [GO:0090184
            "positive regulation of kidney development" evidence=ISS]
            [GO:0090190 "positive regulation of branching involved in ureteric
            bud morphogenesis" evidence=ISS] [GO:0045893 "positive regulation
            of transcription, DNA-dependent" evidence=ISS] [GO:0008584 "male
            gonad development" evidence=ISS] [GO:0045662 "negative regulation
            of myoblast differentiation" evidence=ISS] [GO:0060612 "adipose
            tissue development" evidence=ISS] [GO:0007165 "signal transduction"
            evidence=ISS] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
            GO:GO:0005737 GO:GO:0045892 GO:GO:0007165 GO:GO:0043066
            GO:GO:0001755 GO:GO:0001701 GO:GO:0045944 GO:GO:0007422
            GO:GO:0060612 GO:GO:0003700 GO:GO:0007283 GO:GO:0006351
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0060009 GO:GO:0090190 GO:GO:0001649 GO:GO:0045444
            GO:GO:0000979 GO:GO:0048709 GO:GO:0048484 GO:GO:0010817
            GO:GO:0048469 GO:GO:0033690 GO:GO:0045662 GO:GO:0046533
            EMBL:AE006465 GO:GO:0060018 GO:GO:0014015 GO:GO:0072289
            GO:GO:0072197 HOGENOM:HOG000108876 HOVERGEN:HBG002061 KO:K09270
            InterPro:IPR022151 Pfam:PF12444 CTD:30812 eggNOG:NOG324597
            OrthoDB:EOG4ZKJMD EMBL:AF226675 EMBL:Z99757 EMBL:BC031797
            EMBL:AF164104 IPI:IPI00299069 RefSeq:NP_055402.2 UniGene:Hs.243678
            ProteinModelPortal:P57073 SMR:P57073 IntAct:P57073 STRING:P57073
            PhosphoSite:P57073 DMDM:10720294 PRIDE:P57073
            Ensembl:ENST00000293894 GeneID:30812 KEGG:hsa:30812 UCSC:uc002ckn.3
            GeneCards:GC16P001033 HGNC:HGNC:11203 HPA:HPA041640 MIM:605923
            neXtProt:NX_P57073 PharmGKB:PA36040 InParanoid:P57073 OMA:DQSHGSP
            PhylomeDB:P57073 ChiTaRS:SOX8 GenomeRNAi:30812 NextBio:52860
            Bgee:P57073 CleanEx:HS_SOX8 Genevestigator:P57073
            GermOnline:ENSG00000005513 GO:GO:0061138 GO:GO:0072034
            GO:GO:0060221 Uniprot:P57073
        Length = 446

 Score = 104 (41.7 bits), Expect = 6.4e-05, P = 6.4e-05
 Identities = 20/71 (28%), Positives = 42/71 (59%)

Query:    43 KRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAE 102
             KRP++A+ ++ +  R+   + +P   + A + K  G+ W+ +SE+EK P+V++A   + +
Sbjct:   103 KRPMNAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLSESEKRPFVEEAERLRVQ 161

Query:   103 YELALEAYKKQ 113
             ++     YK Q
Sbjct:   162 HKKDHPDYKYQ 172


>UNIPROTKB|Q8AWH3 [details] [associations]
            symbol:sox17a "Transcription factor Sox-17-alpha"
            species:8364 "Xenopus (Silurana) tropicalis" [GO:0005634 "nucleus"
            evidence=ISS] [GO:0007492 "endoderm development" evidence=ISS]
            [GO:0008013 "beta-catenin binding" evidence=ISS] [GO:0043565
            "sequence-specific DNA binding" evidence=ISS] [GO:0045893 "positive
            regulation of transcription, DNA-dependent" evidence=ISS]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=ISS] InterPro:IPR009071
            Pfam:PF00505 GO:GO:0005634 GO:GO:0016055 GO:GO:0043565
            GO:GO:0045944 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0070121 GO:GO:0008013
            GO:GO:0007492 GO:GO:0007369 GO:GO:0061371 HSSP:P48431
            eggNOG:NOG242943 KO:K04495 InterPro:IPR021934 Pfam:PF12067
            PROSITE:PS51516 GeneTree:ENSGT00670000097649 HOGENOM:HOG000069999
            OrthoDB:EOG4KD6M5 EMBL:AY157635 EMBL:AC148408 EMBL:CR848309
            EMBL:BC074527 RefSeq:NP_989425.1 UniGene:Str.114
            ProteinModelPortal:Q8AWH3 SMR:Q8AWH3 STRING:Q8AWH3
            Ensembl:ENSXETT00000053697 GeneID:395066 KEGG:xtr:395066 CTD:395066
            Xenbase:XB-GENE-484295 InParanoid:Q8AWH3 OMA:FNGHEAN Bgee:Q8AWH3
            GO:GO:0035469 Uniprot:Q8AWH3
        Length = 383

 Score = 103 (41.3 bits), Expect = 6.5e-05, P = 6.5e-05
 Identities = 19/61 (31%), Positives = 39/61 (63%)

Query:    43 KRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAE 102
             +RP++A+ ++ +D RK   +  PD  + A + K  G+ WK+++ AEK P+V++A   + +
Sbjct:    62 RRPMNAFMVWAKDERKRLAQQNPDLHN-AELSKMLGKSWKALTLAEKRPFVEEAERLRVQ 120

Query:   103 Y 103
             +
Sbjct:   121 H 121


>ZFIN|ZDB-GENE-001103-1 [details] [associations]
            symbol:sox9a "SRY-box containing gene 9a"
            species:7955 "Danio rerio" [GO:0048839 "inner ear development"
            evidence=IGI;IMP] [GO:0033339 "pectoral fin development"
            evidence=IMP] [GO:0051216 "cartilage development" evidence=IMP]
            [GO:0048708 "astrocyte differentiation" evidence=IMP] [GO:0048709
            "oligodendrocyte differentiation" evidence=IMP] [GO:0043049 "otic
            placode formation" evidence=IGI] [GO:0035118 "embryonic pectoral
            fin morphogenesis" evidence=IMP] [GO:0030916 "otic vesicle
            formation" evidence=IGI] [GO:0060536 "cartilage morphogenesis"
            evidence=IMP] [GO:0005737 "cytoplasm" evidence=IMP]
            InterPro:IPR009071 Pfam:PF00505 ZFIN:ZDB-GENE-001103-1
            GO:GO:0005737 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0048709 GO:GO:0035118 GO:GO:0043049
            GO:GO:0060536 GO:GO:0048708 GeneTree:ENSGT00670000097649
            HOGENOM:HOG000108876 HOVERGEN:HBG002061 KO:K09270
            InterPro:IPR022151 Pfam:PF12444 HSSP:P48432 OMA:GAGHVWM
            EMBL:CU074420 EMBL:AF277096 EMBL:AY090034 EMBL:AY090035
            IPI:IPI00507610 RefSeq:NP_571718.1 UniGene:Dr.80814 SMR:Q9DFH2
            STRING:Q9DFH2 Ensembl:ENSDART00000005676 GeneID:60641
            KEGG:dre:60641 CTD:60641 InParanoid:Q9DFH2 NextBio:20892427
            Uniprot:Q9DFH2
        Length = 462

 Score = 104 (41.7 bits), Expect = 6.8e-05, P = 6.8e-05
 Identities = 26/92 (28%), Positives = 48/92 (52%)

Query:    40 NAP--KRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             N P  KRP++A+ ++ +  R+   + +P   + A + K  G+ W+ ++E EK P+V++A 
Sbjct:   103 NKPHVKRPMNAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLNEVEKRPFVEEAE 161

Query:    98 NKKAEYELALEAYKKQLN-----DNGAGVSED 124
               + +++     YK Q        NG   SED
Sbjct:   162 RLRVQHKKDHPDYKYQPRRRKSVKNGQSESED 193


>RGD|1309072 [details] [associations]
            symbol:Sox8 "SRY (sex determining region Y)-box 8" species:10116
            "Rattus norvegicus" [GO:0000979 "RNA polymerase II core promoter
            sequence-specific DNA binding" evidence=ISO;ISS] [GO:0001649
            "osteoblast differentiation" evidence=ISO;ISS] [GO:0001701 "in
            utero embryonic development" evidence=ISO;ISS] [GO:0001755 "neural
            crest cell migration" evidence=ISO;ISS] [GO:0003674
            "molecular_function" evidence=ND] [GO:0003677 "DNA binding"
            evidence=ISO] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA;ISO] [GO:0005575
            "cellular_component" evidence=ND] [GO:0005634 "nucleus"
            evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=ISO;ISS]
            [GO:0007165 "signal transduction" evidence=ISO;ISS] [GO:0007283
            "spermatogenesis" evidence=ISO;ISS] [GO:0007422 "peripheral nervous
            system development" evidence=ISO;ISS] [GO:0008134 "transcription
            factor binding" evidence=IEA;ISO] [GO:0008150 "biological_process"
            evidence=ND] [GO:0008584 "male gonad development" evidence=ISO;ISS]
            [GO:0010628 "positive regulation of gene expression" evidence=ISO]
            [GO:0010817 "regulation of hormone levels" evidence=ISO;ISS]
            [GO:0014015 "positive regulation of gliogenesis" evidence=ISO;ISS]
            [GO:0033690 "positive regulation of osteoblast proliferation"
            evidence=ISO;ISS] [GO:0035914 "skeletal muscle cell
            differentiation" evidence=ISO] [GO:0043066 "negative regulation of
            apoptotic process" evidence=ISO;ISS] [GO:0043565 "sequence-specific
            DNA binding" evidence=ISO] [GO:0045165 "cell fate commitment"
            evidence=ISO;ISS] [GO:0045444 "fat cell differentiation"
            evidence=ISO;ISS] [GO:0045662 "negative regulation of myoblast
            differentiation" evidence=ISO;ISS] [GO:0045892 "negative regulation
            of transcription, DNA-dependent" evidence=ISO;ISS] [GO:0045893
            "positive regulation of transcription, DNA-dependent"
            evidence=ISO;ISS] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=IEA;ISO] [GO:0046533
            "negative regulation of photoreceptor cell differentiation"
            evidence=IEA;ISO] [GO:0048469 "cell maturation" evidence=IEA;ISO]
            [GO:0048484 "enteric nervous system development" evidence=ISO;ISS]
            [GO:0048709 "oligodendrocyte differentiation" evidence=ISO;ISS]
            [GO:0060009 "Sertoli cell development" evidence=ISO;ISS]
            [GO:0060018 "astrocyte fate commitment" evidence=IEA;ISO]
            [GO:0060041 "retina development in camera-type eye"
            evidence=ISO;ISS] [GO:0060221 "retinal rod cell differentiation"
            evidence=ISO;ISS] [GO:0060612 "adipose tissue development"
            evidence=ISO;ISS] [GO:0061138 "morphogenesis of a branching
            epithelium" evidence=ISO;ISS] [GO:0072034 "renal vesicle induction"
            evidence=ISO;ISS] [GO:0072197 "ureter morphogenesis"
            evidence=ISO;ISS] [GO:0072289 "metanephric nephron tubule
            formation" evidence=ISO;ISS] [GO:0090184 "positive regulation of
            kidney development" evidence=ISO;ISS] [GO:0090190 "positive
            regulation of branching involved in ureteric bud morphogenesis"
            evidence=ISO;ISS] InterPro:IPR009071 Pfam:PF00505 RGD:1309072
            GO:GO:0005634 GO:GO:0005737 GO:GO:0045892 GO:GO:0007165
            GO:GO:0045893 GO:GO:0043066 GO:GO:0001755 GO:GO:0001701
            GO:GO:0045944 GO:GO:0007422 GO:GO:0060612 GO:GO:0003700
            GO:GO:0007283 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0060009 GO:GO:0090190 GO:GO:0001649
            GO:GO:0045444 GO:GO:0000979 EMBL:CH473948 GO:GO:0048709
            GO:GO:0048484 GO:GO:0010817 GO:GO:0048469 GO:GO:0033690
            GO:GO:0045662 GO:GO:0046533 GO:GO:0060018 GO:GO:0014015
            GO:GO:0072289 GO:GO:0072197 GeneTree:ENSGT00670000097649 KO:K09270
            InterPro:IPR022151 Pfam:PF12444 CTD:30812 OrthoDB:EOG4ZKJMD
            OMA:DQSHGSP GO:GO:0061138 GO:GO:0072034 GO:GO:0060221
            IPI:IPI00368755 RefSeq:NP_001100459.1 UniGene:Rn.141194
            Ensembl:ENSRNOT00000025494 GeneID:302993 KEGG:rno:302993
            UCSC:RGD:1309072 NextBio:650512 Uniprot:D3ZR96
        Length = 463

 Score = 104 (41.7 bits), Expect = 6.8e-05, P = 6.8e-05
 Identities = 20/71 (28%), Positives = 42/71 (59%)

Query:    43 KRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAE 102
             KRP++A+ ++ +  R+   + +P   + A + K  G+ W+ +SE+EK P+V++A   + +
Sbjct:   100 KRPMNAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLSESEKRPFVEEAERLRVQ 158

Query:   103 YELALEAYKKQ 113
             ++     YK Q
Sbjct:   159 HKKDHPDYKYQ 169


>MGI|MGI:98370 [details] [associations]
            symbol:Sox8 "SRY-box containing gene 8" species:10090 "Mus
            musculus" [GO:0000979 "RNA polymerase II core promoter
            sequence-specific DNA binding" evidence=IDA] [GO:0001649
            "osteoblast differentiation" evidence=IMP] [GO:0001701 "in utero
            embryonic development" evidence=IGI] [GO:0001755 "neural crest cell
            migration" evidence=IMP] [GO:0003677 "DNA binding" evidence=IDA]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=IMP;IDA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737
            "cytoplasm" evidence=IMP;IDA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0007165 "signal
            transduction" evidence=IMP] [GO:0007283 "spermatogenesis"
            evidence=IGI;IMP] [GO:0007422 "peripheral nervous system
            development" evidence=IGI] [GO:0008134 "transcription factor
            binding" evidence=IPI] [GO:0008584 "male gonad development"
            evidence=IGI] [GO:0010628 "positive regulation of gene expression"
            evidence=IGI] [GO:0010817 "regulation of hormone levels"
            evidence=IMP] [GO:0014015 "positive regulation of gliogenesis"
            evidence=IMP] [GO:0033690 "positive regulation of osteoblast
            proliferation" evidence=IMP] [GO:0035914 "skeletal muscle cell
            differentiation" evidence=IMP] [GO:0043066 "negative regulation of
            apoptotic process" evidence=IMP] [GO:0043565 "sequence-specific DNA
            binding" evidence=IDA] [GO:0045165 "cell fate commitment"
            evidence=IGI] [GO:0045444 "fat cell differentiation" evidence=IMP]
            [GO:0045662 "negative regulation of myoblast differentiation"
            evidence=IDA] [GO:0045892 "negative regulation of transcription,
            DNA-dependent" evidence=IMP;IDA] [GO:0045893 "positive regulation
            of transcription, DNA-dependent" evidence=IDA;IMP] [GO:0045944
            "positive regulation of transcription from RNA polymerase II
            promoter" evidence=ISO;IDA] [GO:0046533 "negative regulation of
            photoreceptor cell differentiation" evidence=IGI] [GO:0048469 "cell
            maturation" evidence=IGI;IMP] [GO:0048484 "enteric nervous system
            development" evidence=IMP] [GO:0048709 "oligodendrocyte
            differentiation" evidence=IMP] [GO:0060009 "Sertoli cell
            development" evidence=IGI] [GO:0060018 "astrocyte fate commitment"
            evidence=IGI] [GO:0060041 "retina development in camera-type eye"
            evidence=IGI] [GO:0060221 "retinal rod cell differentiation"
            evidence=IGI] [GO:0060612 "adipose tissue development"
            evidence=IMP] [GO:0061138 "morphogenesis of a branching epithelium"
            evidence=IGI] [GO:0072034 "renal vesicle induction" evidence=IMP]
            [GO:0072197 "ureter morphogenesis" evidence=IGI] [GO:0072289
            "metanephric nephron tubule formation" evidence=IGI] [GO:0090184
            "positive regulation of kidney development" evidence=IGI]
            [GO:0090190 "positive regulation of branching involved in ureteric
            bud morphogenesis" evidence=IMP] InterPro:IPR009071 MGI:MGI:98370
            Pfam:PF00505 GO:GO:0005634 GO:GO:0005737 GO:GO:0045892
            GO:GO:0007165 GO:GO:0043066 GO:GO:0001755 GO:GO:0001701
            GO:GO:0045944 GO:GO:0007422 GO:GO:0060612 GO:GO:0003700
            GO:GO:0007283 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0060009 GO:GO:0090190
            GO:GO:0001649 GO:GO:0045444 GO:GO:0035914 GO:GO:0000979
            GO:GO:0048709 GO:GO:0048484 GO:GO:0010817 GO:GO:0048469
            GO:GO:0033690 GO:GO:0045662 GO:GO:0046533 GO:GO:0060018
            GO:GO:0014015 GO:GO:0072289 GO:GO:0072197 HOGENOM:HOG000108876
            HOVERGEN:HBG002061 KO:K09270 InterPro:IPR022151 Pfam:PF12444
            CTD:30812 eggNOG:NOG324597 OrthoDB:EOG4ZKJMD OMA:DQSHGSP
            ChiTaRS:SOX8 GO:GO:0061138 GO:GO:0072034 GO:GO:0060221
            EMBL:AF191325 EMBL:BC085619 EMBL:Z18957 IPI:IPI00111141 PIR:S30246
            RefSeq:NP_035577.1 UniGene:Mm.258220 ProteinModelPortal:Q04886
            SMR:Q04886 IntAct:Q04886 STRING:Q04886 PhosphoSite:Q04886
            PRIDE:Q04886 Ensembl:ENSMUST00000025003 GeneID:20681 KEGG:mmu:20681
            InParanoid:Q04886 NextBio:299189 Bgee:Q04886 CleanEx:MM_SOX8
            Genevestigator:Q04886 GermOnline:ENSMUSG00000024176 Uniprot:Q04886
        Length = 464

 Score = 104 (41.7 bits), Expect = 6.8e-05, P = 6.8e-05
 Identities = 20/71 (28%), Positives = 42/71 (59%)

Query:    43 KRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAE 102
             KRP++A+ ++ +  R+   + +P   + A + K  G+ W+ +SE+EK P+V++A   + +
Sbjct:   100 KRPMNAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLSESEKRPFVEEAERLRVQ 158

Query:   103 YELALEAYKKQ 113
             ++     YK Q
Sbjct:   159 HKKDHPDYKYQ 169


>UNIPROTKB|F1MBL5 [details] [associations]
            symbol:SOX8 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0090190 "positive regulation of branching involved in
            ureteric bud morphogenesis" evidence=IEA] [GO:0072289 "metanephric
            nephron tubule formation" evidence=IEA] [GO:0072197 "ureter
            morphogenesis" evidence=IEA] [GO:0072034 "renal vesicle induction"
            evidence=IEA] [GO:0061138 "morphogenesis of a branching epithelium"
            evidence=IEA] [GO:0060612 "adipose tissue development"
            evidence=IEA] [GO:0060221 "retinal rod cell differentiation"
            evidence=IEA] [GO:0060018 "astrocyte fate commitment" evidence=IEA]
            [GO:0060009 "Sertoli cell development" evidence=IEA] [GO:0048709
            "oligodendrocyte differentiation" evidence=IEA] [GO:0048484
            "enteric nervous system development" evidence=IEA] [GO:0048469
            "cell maturation" evidence=IEA] [GO:0046533 "negative regulation of
            photoreceptor cell differentiation" evidence=IEA] [GO:0045944
            "positive regulation of transcription from RNA polymerase II
            promoter" evidence=IEA] [GO:0045892 "negative regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0045662 "negative
            regulation of myoblast differentiation" evidence=IEA] [GO:0045444
            "fat cell differentiation" evidence=IEA] [GO:0043066 "negative
            regulation of apoptotic process" evidence=IEA] [GO:0033690
            "positive regulation of osteoblast proliferation" evidence=IEA]
            [GO:0014015 "positive regulation of gliogenesis" evidence=IEA]
            [GO:0010817 "regulation of hormone levels" evidence=IEA]
            [GO:0008134 "transcription factor binding" evidence=IEA]
            [GO:0007422 "peripheral nervous system development" evidence=IEA]
            [GO:0007283 "spermatogenesis" evidence=IEA] [GO:0007165 "signal
            transduction" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0003700 "sequence-specific
            DNA binding transcription factor activity" evidence=IEA]
            [GO:0001755 "neural crest cell migration" evidence=IEA] [GO:0001701
            "in utero embryonic development" evidence=IEA] [GO:0001649
            "osteoblast differentiation" evidence=IEA] [GO:0000979 "RNA
            polymerase II core promoter sequence-specific DNA binding"
            evidence=IEA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
            GO:GO:0005737 GO:GO:0045892 GO:GO:0007165 GO:GO:0043066
            GO:GO:0001755 GO:GO:0001701 GO:GO:0045944 GO:GO:0007422
            GO:GO:0060612 GO:GO:0003700 GO:GO:0007283 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0060009
            GO:GO:0090190 GO:GO:0001649 GO:GO:0045444 GO:GO:0000979
            GO:GO:0048709 GO:GO:0048484 GO:GO:0010817 GO:GO:0048469
            GO:GO:0033690 GO:GO:0045662 GO:GO:0046533 GO:GO:0060018
            GO:GO:0014015 GO:GO:0072289 GO:GO:0072197
            GeneTree:ENSGT00670000097649 InterPro:IPR022151 Pfam:PF12444
            OMA:DQSHGSP GO:GO:0061138 GO:GO:0072034 GO:GO:0060221
            EMBL:DAAA02057285 IPI:IPI00696341 Ensembl:ENSBTAT00000027633
            Uniprot:F1MBL5
        Length = 468

 Score = 104 (41.7 bits), Expect = 6.9e-05, P = 6.9e-05
 Identities = 20/71 (28%), Positives = 42/71 (59%)

Query:    43 KRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAE 102
             KRP++A+ ++ +  R+   + +P   + A + K  G+ W+ +SE+EK P+V++A   + +
Sbjct:   109 KRPMNAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLSESEKRPFVEEAERLRVQ 167

Query:   103 YELALEAYKKQ 113
             ++     YK Q
Sbjct:   168 HKKDHPDYKYQ 178


>WB|WBGene00004771 [details] [associations]
            symbol:sem-2 species:6239 "Caenorhabditis elegans"
            [GO:0005634 "nucleus" evidence=IDA] InterPro:IPR009071 Pfam:PF00505
            GO:GO:0005634 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 EMBL:FO080144 eggNOG:NOG130659
            GeneTree:ENSGT00690000101789 HSSP:P35710 RefSeq:NP_740846.1
            ProteinModelPortal:Q8T3B9 SMR:Q8T3B9 EnsemblMetazoa:C32E12.5.1
            EnsemblMetazoa:C32E12.5.2 GeneID:172162 KEGG:cel:CELE_C32E12.5
            UCSC:C32E12.5.1 CTD:172162 WormBase:C32E12.5 HOGENOM:HOG000019701
            InParanoid:Q8T3B9 OMA:PSEFGHA NextBio:874275 Uniprot:Q8T3B9
        Length = 404

 Score = 103 (41.3 bits), Expect = 7.1e-05, P = 7.1e-05
 Identities = 21/58 (36%), Positives = 37/58 (63%)

Query:    39 SNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKA 96
             SN  KRP++A+ ++ +  R+   E  PD  + A + K  G +W+S+++ EKAP+V +A
Sbjct:    90 SNHIKRPMNAFMVWSQMERRKICEHQPDMHN-AEISKQLGSRWRSLTDEEKAPFVAEA 146


>UNIPROTKB|F1RSI1 [details] [associations]
            symbol:SOX17 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:2000043 "regulation of cardiac cell fate specification"
            evidence=IEA] [GO:2000035 "regulation of stem cell division"
            evidence=IEA] [GO:0090090 "negative regulation of canonical Wnt
            receptor signaling pathway" evidence=IEA] [GO:0072091 "regulation
            of stem cell proliferation" evidence=IEA] [GO:0072001 "renal system
            development" evidence=IEA] [GO:0061031 "endodermal digestive tract
            morphogenesis" evidence=IEA] [GO:0061010 "gall bladder development"
            evidence=IEA] [GO:0061009 "common bile duct development"
            evidence=IEA] [GO:0060956 "endocardial cell differentiation"
            evidence=IEA] [GO:0060913 "cardiac cell fate determination"
            evidence=IEA] [GO:0060807 "regulation of transcription from RNA
            polymerase II promoter involved in definitive endodermal cell fate
            specification" evidence=IEA] [GO:0060214 "endocardium formation"
            evidence=IEA] [GO:0060070 "canonical Wnt receptor signaling
            pathway" evidence=IEA] [GO:0050821 "protein stabilization"
            evidence=IEA] [GO:0048866 "stem cell fate specification"
            evidence=IEA] [GO:0048643 "positive regulation of skeletal muscle
            tissue development" evidence=IEA] [GO:0048617 "embryonic foregut
            morphogenesis" evidence=IEA] [GO:0048568 "embryonic organ
            development" evidence=IEA] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=IEA]
            [GO:0045732 "positive regulation of protein catabolic process"
            evidence=IEA] [GO:0045597 "positive regulation of cell
            differentiation" evidence=IEA] [GO:0044212 "transcription
            regulatory region DNA binding" evidence=IEA] [GO:0043565
            "sequence-specific DNA binding" evidence=IEA] [GO:0042662 "negative
            regulation of mesodermal cell fate specification" evidence=IEA]
            [GO:0042074 "cell migration involved in gastrulation" evidence=IEA]
            [GO:0031648 "protein destabilization" evidence=IEA] [GO:0030308
            "negative regulation of cell growth" evidence=IEA] [GO:0023019
            "signal transduction involved in regulation of gene expression"
            evidence=IEA] [GO:0021903 "rostrocaudal neural tube patterning"
            evidence=IEA] [GO:0008134 "transcription factor binding"
            evidence=IEA] [GO:0008013 "beta-catenin binding" evidence=IEA]
            [GO:0007493 "endodermal cell fate determination" evidence=IEA]
            [GO:0007283 "spermatogenesis" evidence=IEA] [GO:0005667
            "transcription factor complex" evidence=IEA] [GO:0003713
            "transcription coactivator activity" evidence=IEA] [GO:0003705 "RNA
            polymerase II distal enhancer sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0003308 "negative
            regulation of Wnt receptor signaling pathway involved in heart
            development" evidence=IEA] [GO:0003151 "outflow tract
            morphogenesis" evidence=IEA] [GO:0003142 "cardiogenic plate
            morphogenesis" evidence=IEA] [GO:0001947 "heart looping"
            evidence=IEA] [GO:0001828 "inner cell mass cellular morphogenesis"
            evidence=IEA] [GO:0001570 "vasculogenesis" evidence=IEA]
            [GO:0001525 "angiogenesis" evidence=IEA] [GO:0000122 "negative
            regulation of transcription from RNA polymerase II promoter"
            evidence=IEA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0050821
            GO:GO:0030308 GO:GO:0043565 GO:GO:0045597 GO:GO:0045944
            GO:GO:0007283 GO:GO:0001525 GO:GO:0005667 GO:GO:0003705
            GO:GO:0000122 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0044212 GO:GO:0003713 GO:GO:0001570
            GO:GO:0090090 GO:GO:0001947 GO:GO:0045732 GO:GO:0042074
            GO:GO:0003151 GO:GO:0060070 GO:GO:0048617 GO:GO:0021903
            GO:GO:0003308 GO:GO:0031648 GO:GO:0048568 GO:GO:0023019
            GO:GO:0048643 GO:GO:2000035 GO:GO:0042662 GO:GO:0072001
            GO:GO:0007493 GO:GO:0072091 GO:GO:0061031 GO:GO:0061009
            GO:GO:0061010 GO:GO:0060913 GO:GO:0060956 GO:GO:0060214 KO:K04495
            InterPro:IPR021934 Pfam:PF12067 PROSITE:PS51516
            GeneTree:ENSGT00670000097649 OMA:ALPCRDG GO:GO:0003142
            GO:GO:0001828 GO:GO:2000043 GO:GO:0060807 GO:GO:0048866
            EMBL:CU463866 RefSeq:XP_001928411.1 Ensembl:ENSSSCT00000006855
            GeneID:100154087 KEGG:ssc:100154087 Uniprot:F1RSI1
        Length = 407

 Score = 103 (41.3 bits), Expect = 7.2e-05, P = 7.2e-05
 Identities = 19/61 (31%), Positives = 39/61 (63%)

Query:    43 KRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAE 102
             +RP++A+ ++ +D RK   +  PD  + A + K  G+ WK+++ AEK P+V++A   + +
Sbjct:    69 RRPMNAFMVWAKDERKRLAQQNPDLHN-AELSKMLGKSWKALTLAEKRPFVEEAERLRVQ 127

Query:   103 Y 103
             +
Sbjct:   128 H 128


>UNIPROTKB|F1N1F9 [details] [associations]
            symbol:SOX17 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:2000043 "regulation of cardiac cell fate specification"
            evidence=IEA] [GO:2000035 "regulation of stem cell division"
            evidence=IEA] [GO:0090090 "negative regulation of canonical Wnt
            receptor signaling pathway" evidence=IEA] [GO:0072091 "regulation
            of stem cell proliferation" evidence=IEA] [GO:0072001 "renal system
            development" evidence=IEA] [GO:0061031 "endodermal digestive tract
            morphogenesis" evidence=IEA] [GO:0061010 "gall bladder development"
            evidence=IEA] [GO:0061009 "common bile duct development"
            evidence=IEA] [GO:0060956 "endocardial cell differentiation"
            evidence=IEA] [GO:0060913 "cardiac cell fate determination"
            evidence=IEA] [GO:0060807 "regulation of transcription from RNA
            polymerase II promoter involved in definitive endodermal cell fate
            specification" evidence=IEA] [GO:0060214 "endocardium formation"
            evidence=IEA] [GO:0060070 "canonical Wnt receptor signaling
            pathway" evidence=IEA] [GO:0050821 "protein stabilization"
            evidence=IEA] [GO:0048866 "stem cell fate specification"
            evidence=IEA] [GO:0048643 "positive regulation of skeletal muscle
            tissue development" evidence=IEA] [GO:0048617 "embryonic foregut
            morphogenesis" evidence=IEA] [GO:0048568 "embryonic organ
            development" evidence=IEA] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=IEA]
            [GO:0045732 "positive regulation of protein catabolic process"
            evidence=IEA] [GO:0045597 "positive regulation of cell
            differentiation" evidence=IEA] [GO:0044212 "transcription
            regulatory region DNA binding" evidence=IEA] [GO:0043565
            "sequence-specific DNA binding" evidence=IEA] [GO:0042662 "negative
            regulation of mesodermal cell fate specification" evidence=IEA]
            [GO:0042074 "cell migration involved in gastrulation" evidence=IEA]
            [GO:0031648 "protein destabilization" evidence=IEA] [GO:0030308
            "negative regulation of cell growth" evidence=IEA] [GO:0023019
            "signal transduction involved in regulation of gene expression"
            evidence=IEA] [GO:0021903 "rostrocaudal neural tube patterning"
            evidence=IEA] [GO:0008134 "transcription factor binding"
            evidence=IEA] [GO:0008013 "beta-catenin binding" evidence=IEA]
            [GO:0007493 "endodermal cell fate determination" evidence=IEA]
            [GO:0007283 "spermatogenesis" evidence=IEA] [GO:0005667
            "transcription factor complex" evidence=IEA] [GO:0003713
            "transcription coactivator activity" evidence=IEA] [GO:0003705 "RNA
            polymerase II distal enhancer sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0003308 "negative
            regulation of Wnt receptor signaling pathway involved in heart
            development" evidence=IEA] [GO:0003151 "outflow tract
            morphogenesis" evidence=IEA] [GO:0003142 "cardiogenic plate
            morphogenesis" evidence=IEA] [GO:0001947 "heart looping"
            evidence=IEA] [GO:0001828 "inner cell mass cellular morphogenesis"
            evidence=IEA] [GO:0001570 "vasculogenesis" evidence=IEA]
            [GO:0001525 "angiogenesis" evidence=IEA] [GO:0000122 "negative
            regulation of transcription from RNA polymerase II promoter"
            evidence=IEA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0050821
            GO:GO:0030308 GO:GO:0043565 GO:GO:0045597 GO:GO:0045944
            GO:GO:0007283 GO:GO:0001525 GO:GO:0005667 GO:GO:0003705
            GO:GO:0000122 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0044212 GO:GO:0003713 GO:GO:0001570
            GO:GO:0090090 GO:GO:0001947 GO:GO:0045732 GO:GO:0042074
            GO:GO:0003151 GO:GO:0060070 GO:GO:0048617 GO:GO:0021903
            GO:GO:0003308 GO:GO:0031648 GO:GO:0048568 GO:GO:0023019
            GO:GO:0048643 GO:GO:2000035 GO:GO:0042662 GO:GO:0072001
            GO:GO:0007493 GO:GO:0072091 GO:GO:0061031 GO:GO:0061009
            GO:GO:0061010 GO:GO:0060913 GO:GO:0060956 GO:GO:0060214 KO:K04495
            InterPro:IPR021934 Pfam:PF12067 PROSITE:PS51516
            GeneTree:ENSGT00670000097649 CTD:64321 OMA:ALPCRDG GO:GO:0003142
            GO:GO:0001828 GO:GO:2000043 GO:GO:0060807 GO:GO:0048866
            EMBL:DAAA02038302 IPI:IPI00687993 RefSeq:NP_001193180.1
            UniGene:Bt.112292 Ensembl:ENSBTAT00000007553 GeneID:534010
            KEGG:bta:534010 NextBio:20876231 Uniprot:F1N1F9
        Length = 410

 Score = 103 (41.3 bits), Expect = 7.3e-05, P = 7.3e-05
 Identities = 19/61 (31%), Positives = 39/61 (63%)

Query:    43 KRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAE 102
             +RP++A+ ++ +D RK   +  PD  + A + K  G+ WK+++ AEK P+V++A   + +
Sbjct:    69 RRPMNAFMVWAKDERKRLAQQNPDLHN-AELSKMLGKSWKALTLAEKRPFVEEAERLRVQ 127

Query:   103 Y 103
             +
Sbjct:   128 H 128


>UNIPROTKB|Q9H6I2 [details] [associations]
            symbol:SOX17 "Transcription factor SOX-17" species:9606
            "Homo sapiens" [GO:0000122 "negative regulation of transcription
            from RNA polymerase II promoter" evidence=IEA] [GO:0001828 "inner
            cell mass cellular morphogenesis" evidence=IEA] [GO:0003308
            "negative regulation of Wnt receptor signaling pathway involved in
            heart development" evidence=IEA] [GO:0003713 "transcription
            coactivator activity" evidence=IEA] [GO:0007283 "spermatogenesis"
            evidence=IEA] [GO:0007493 "endodermal cell fate determination"
            evidence=IEA] [GO:0021903 "rostrocaudal neural tube patterning"
            evidence=IEA] [GO:0023019 "signal transduction involved in
            regulation of gene expression" evidence=IEA] [GO:0042074 "cell
            migration involved in gastrulation" evidence=IEA] [GO:0042662
            "negative regulation of mesodermal cell fate specification"
            evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
            evidence=IEA] [GO:0045597 "positive regulation of cell
            differentiation" evidence=IEA] [GO:0045732 "positive regulation of
            protein catabolic process" evidence=IEA] [GO:0048568 "embryonic
            organ development" evidence=IEA] [GO:0048643 "positive regulation
            of skeletal muscle tissue development" evidence=IEA] [GO:0048866
            "stem cell fate specification" evidence=IEA] [GO:0060070 "canonical
            Wnt receptor signaling pathway" evidence=IEA] [GO:0061009 "common
            bile duct development" evidence=IEA] [GO:0061010 "gall bladder
            development" evidence=IEA] [GO:0072091 "regulation of stem cell
            proliferation" evidence=IEA] [GO:2000035 "regulation of stem cell
            division" evidence=IEA] [GO:2000043 "regulation of cardiac cell
            fate specification" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0001706 "endoderm formation" evidence=IDA]
            [GO:0001947 "heart looping" evidence=ISS] [GO:0045995 "regulation
            of embryonic development" evidence=ISS] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=ISS] [GO:0008013
            "beta-catenin binding" evidence=IPI] [GO:0008134 "transcription
            factor binding" evidence=IPI] [GO:0031648 "protein destabilization"
            evidence=IMP] [GO:0050821 "protein stabilization" evidence=IMP]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IDA] [GO:0042789 "mRNA
            transcription from RNA polymerase II promoter" evidence=IDA]
            [GO:0003151 "outflow tract morphogenesis" evidence=ISS] [GO:0044212
            "transcription regulatory region DNA binding" evidence=ISS]
            [GO:0003705 "RNA polymerase II distal enhancer sequence-specific
            DNA binding transcription factor activity" evidence=ISS]
            [GO:0060956 "endocardial cell differentiation" evidence=ISS]
            [GO:0060214 "endocardium formation" evidence=ISS] [GO:0045893
            "positive regulation of transcription, DNA-dependent" evidence=ISS]
            [GO:0035050 "embryonic heart tube development" evidence=ISS]
            [GO:0001570 "vasculogenesis" evidence=ISS] [GO:0001525
            "angiogenesis" evidence=ISS] [GO:0005667 "transcription factor
            complex" evidence=IDA] [GO:0060914 "heart formation" evidence=TAS]
            [GO:0060913 "cardiac cell fate determination" evidence=IMP]
            [GO:0061031 "endodermal digestive tract morphogenesis"
            evidence=ISS] [GO:0060807 "regulation of transcription from RNA
            polymerase II promoter involved in definitive endodermal cell fate
            specification" evidence=ISS] [GO:0048617 "embryonic foregut
            morphogenesis" evidence=ISS] [GO:0003143 "embryonic heart tube
            morphogenesis" evidence=ISS] [GO:0003142 "cardiogenic plate
            morphogenesis" evidence=ISS] [GO:0072001 "renal system development"
            evidence=IMP] [GO:0090090 "negative regulation of canonical Wnt
            receptor signaling pathway" evidence=IMP] [GO:0030308 "negative
            regulation of cell growth" evidence=IMP] InterPro:IPR009071
            Pfam:PF00505 GO:GO:0050821 GO:GO:0030308 GO:GO:0043565
            GO:GO:0045597 GO:GO:0045944 GO:GO:0007283 GO:GO:0001525
            GO:GO:0005667 GO:GO:0003705 GO:GO:0000122 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0044212
            GO:GO:0003713 GO:GO:0001570 GO:GO:0090090 GO:GO:0001947
            GO:GO:0045732 GO:GO:0042074 GO:GO:0003151 GO:GO:0060070
            GO:GO:0060914 GO:GO:0042789 GO:GO:0048617 GO:GO:0021903
            GO:GO:0003308 GO:GO:0031648 GO:GO:0048568 GO:GO:0023019
            GO:GO:0045995 GO:GO:0048643 GO:GO:2000035 GO:GO:0042662
            GO:GO:0072001 GO:GO:0007493 GO:GO:0072091 GO:GO:0061031
            GO:GO:0061009 GO:GO:0061010 GO:GO:0060913 GO:GO:0060956
            GO:GO:0060214 eggNOG:NOG242943 Orphanet:289365 KO:K04495
            InterPro:IPR021934 Pfam:PF12067 PROSITE:PS51516 EMBL:AB073988
            EMBL:AK025905 IPI:IPI00007874 RefSeq:NP_071899.1 UniGene:Hs.98367
            PDB:2YUL PDB:4A3N PDBsum:2YUL PDBsum:4A3N ProteinModelPortal:Q9H6I2
            SMR:Q9H6I2 STRING:Q9H6I2 PhosphoSite:Q9H6I2 DMDM:23822216
            PRIDE:Q9H6I2 DNASU:64321 Ensembl:ENST00000297316 GeneID:64321
            KEGG:hsa:64321 UCSC:uc003xsb.4 CTD:64321 GeneCards:GC08P055370
            H-InvDB:HIX0034521 HGNC:HGNC:18122 HPA:CAB025594 MIM:610928
            MIM:613674 neXtProt:NX_Q9H6I2 PharmGKB:PA38296 HOGENOM:HOG000069999
            HOVERGEN:HBG000517 InParanoid:Q9H6I2 OMA:ALPCRDG OrthoDB:EOG4KD6M5
            PhylomeDB:Q9H6I2 EvolutionaryTrace:Q9H6I2 GenomeRNAi:64321
            NextBio:66237 ArrayExpress:Q9H6I2 Bgee:Q9H6I2 CleanEx:HS_SOX17
            Genevestigator:Q9H6I2 GermOnline:ENSG00000164736 GO:GO:0003142
            GO:GO:0001828 GO:GO:2000043 GO:GO:0060807 GO:GO:0048866
            Uniprot:Q9H6I2
        Length = 414

 Score = 103 (41.3 bits), Expect = 7.4e-05, P = 7.4e-05
 Identities = 19/61 (31%), Positives = 39/61 (63%)

Query:    43 KRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAE 102
             +RP++A+ ++ +D RK   +  PD  + A + K  G+ WK+++ AEK P+V++A   + +
Sbjct:    69 RRPMNAFMVWAKDERKRLAQQNPDLHN-AELSKMLGKSWKALTLAEKRPFVEEAERLRVQ 127

Query:   103 Y 103
             +
Sbjct:   128 H 128


>MGI|MGI:107543 [details] [associations]
            symbol:Sox17 "SRY-box containing gene 17" species:10090 "Mus
            musculus" [GO:0000122 "negative regulation of transcription from
            RNA polymerase II promoter" evidence=IMP] [GO:0001525
            "angiogenesis" evidence=IGI] [GO:0001570 "vasculogenesis"
            evidence=IGI] [GO:0001706 "endoderm formation" evidence=ISO]
            [GO:0001828 "inner cell mass cellular morphogenesis" evidence=IMP]
            [GO:0001947 "heart looping" evidence=IMP] [GO:0003142 "cardiogenic
            plate morphogenesis" evidence=IMP] [GO:0003143 "embryonic heart
            tube morphogenesis" evidence=IMP] [GO:0003151 "outflow tract
            morphogenesis" evidence=IGI] [GO:0003308 "negative regulation of
            Wnt receptor signaling pathway involved in heart development"
            evidence=IMP] [GO:0003677 "DNA binding" evidence=IDA] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IDA] [GO:0003705 "RNA polymerase II distal enhancer
            sequence-specific DNA binding transcription factor activity"
            evidence=IDA] [GO:0003713 "transcription coactivator activity"
            evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005667 "transcription
            factor complex" evidence=ISO] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IDA] [GO:0007283
            "spermatogenesis" evidence=IDA] [GO:0007369 "gastrulation"
            evidence=IMP] [GO:0007492 "endoderm development" evidence=IMP]
            [GO:0007493 "endodermal cell fate determination" evidence=IDA]
            [GO:0008013 "beta-catenin binding" evidence=ISO] [GO:0008134
            "transcription factor binding" evidence=ISO] [GO:0010628 "positive
            regulation of gene expression" evidence=IMP] [GO:0016055 "Wnt
            receptor signaling pathway" evidence=IEA] [GO:0021903 "rostrocaudal
            neural tube patterning" evidence=IMP] [GO:0023019 "signal
            transduction involved in regulation of gene expression"
            evidence=IDA] [GO:0030178 "negative regulation of Wnt receptor
            signaling pathway" evidence=IDA;IMP] [GO:0030308 "negative
            regulation of cell growth" evidence=ISO] [GO:0031648 "protein
            destabilization" evidence=ISO] [GO:0035050 "embryonic heart tube
            development" evidence=IGI] [GO:0042074 "cell migration involved in
            gastrulation" evidence=IMP] [GO:0042661 "regulation of mesodermal
            cell fate specification" evidence=IMP] [GO:0042662 "negative
            regulation of mesodermal cell fate specification" evidence=IMP]
            [GO:0042789 "mRNA transcription from RNA polymerase II promoter"
            evidence=ISO] [GO:0043565 "sequence-specific DNA binding"
            evidence=IDA] [GO:0044212 "transcription regulatory region DNA
            binding" evidence=IDA] [GO:0045595 "regulation of cell
            differentiation" evidence=IMP] [GO:0045597 "positive regulation of
            cell differentiation" evidence=IMP;IDA] [GO:0045732 "positive
            regulation of protein catabolic process" evidence=IDA] [GO:0045893
            "positive regulation of transcription, DNA-dependent" evidence=IDA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=ISO;IDA] [GO:0045995 "regulation
            of embryonic development" evidence=IMP] [GO:0048568 "embryonic
            organ development" evidence=IMP] [GO:0048617 "embryonic foregut
            morphogenesis" evidence=IMP] [GO:0048643 "positive regulation of
            skeletal muscle tissue development" evidence=IDA] [GO:0048863 "stem
            cell differentiation" evidence=IMP] [GO:0048866 "stem cell fate
            specification" evidence=IDA] [GO:0050821 "protein stabilization"
            evidence=ISO] [GO:0060070 "canonical Wnt receptor signaling
            pathway" evidence=IDA] [GO:0060214 "endocardium formation"
            evidence=IGI] [GO:0060807 "regulation of transcription from RNA
            polymerase II promoter involved in definitive endodermal cell fate
            specification" evidence=IMP] [GO:0060913 "cardiac cell fate
            determination" evidence=ISO] [GO:0060956 "endocardial cell
            differentiation" evidence=IGI] [GO:0061009 "common bile duct
            development" evidence=IMP] [GO:0061010 "gall bladder development"
            evidence=IMP] [GO:0061031 "endodermal digestive tract
            morphogenesis" evidence=IMP] [GO:0072001 "renal system development"
            evidence=ISO] [GO:0072091 "regulation of stem cell proliferation"
            evidence=IDA] [GO:0090090 "negative regulation of canonical Wnt
            receptor signaling pathway" evidence=ISO] [GO:2000035 "regulation
            of stem cell division" evidence=IMP] [GO:2000043 "regulation of
            cardiac cell fate specification" evidence=IMP] InterPro:IPR009071
            MGI:MGI:107543 Pfam:PF00505 GO:GO:0005634 GO:GO:0050821
            GO:GO:0030308 GO:GO:0043565 GO:GO:0045597 GO:GO:0045944
            GO:GO:0007283 GO:GO:0001525 GO:GO:0005667 GO:GO:0003705
            GO:GO:0000122 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0044212 GO:GO:0003713 GO:GO:0001570
            GO:GO:0090090 GO:GO:0001947 GO:GO:0045732 GO:GO:0042074
            GO:GO:0003151 GO:GO:0060070 GO:GO:0048617 GO:GO:0021903
            GO:GO:0003308 GO:GO:0031648 GO:GO:0048568 GO:GO:0023019
            GO:GO:0048643 GO:GO:2000035 GO:GO:0042662 GO:GO:0072001
            GO:GO:0007493 GO:GO:0072091 GO:GO:0061031 GO:GO:0061009
            GO:GO:0061010 GO:GO:0060913 GO:GO:0060956 GO:GO:0060214
            eggNOG:NOG242943 KO:K04495 InterPro:IPR021934 Pfam:PF12067
            PROSITE:PS51516 GeneTree:ENSGT00670000097649 CTD:64321
            HOGENOM:HOG000069999 HOVERGEN:HBG000517 OMA:ALPCRDG
            OrthoDB:EOG4KD6M5 GO:GO:0003142 GO:GO:0001828 GO:GO:2000043
            GO:GO:0060807 GO:GO:0048866 EMBL:D49474 EMBL:D49473 EMBL:AK004781
            EMBL:L29085 IPI:IPI00121298 IPI:IPI00230012 RefSeq:NP_035571.1
            UniGene:Mm.279103 PDB:3F27 PDBsum:3F27 ProteinModelPortal:Q61473
            SMR:Q61473 STRING:Q61473 PhosphoSite:Q61473 PRIDE:Q61473
            DNASU:20671 Ensembl:ENSMUST00000027035 Ensembl:ENSMUST00000116652
            GeneID:20671 KEGG:mmu:20671 UCSC:uc007aey.1 UCSC:uc007afb.1
            InParanoid:Q61473 NextBio:299151 Bgee:Q61473 CleanEx:MM_SOX17
            Genevestigator:Q61473 GermOnline:ENSMUSG00000025902 Uniprot:Q61473
        Length = 419

 Score = 103 (41.3 bits), Expect = 7.5e-05, P = 7.5e-05
 Identities = 19/61 (31%), Positives = 39/61 (63%)

Query:    43 KRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAE 102
             +RP++A+ ++ +D RK   +  PD  + A + K  G+ WK+++ AEK P+V++A   + +
Sbjct:    69 RRPMNAFMVWAKDERKRLAQQNPDLHN-AELSKMLGKSWKALTLAEKRPFVEEAERLRVQ 127

Query:   103 Y 103
             +
Sbjct:   128 H 128


>RGD|1305371 [details] [associations]
            symbol:Sox17 "SRY (sex determining region Y)-box 17"
            species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation
            of transcription from RNA polymerase II promoter" evidence=IEA;ISO]
            [GO:0001525 "angiogenesis" evidence=IEA;ISO] [GO:0001570
            "vasculogenesis" evidence=IEA;ISO] [GO:0001706 "endoderm formation"
            evidence=ISO] [GO:0001828 "inner cell mass cellular morphogenesis"
            evidence=IEA;ISO] [GO:0001947 "heart looping" evidence=IEA;ISO]
            [GO:0003142 "cardiogenic plate morphogenesis" evidence=IEA;ISO]
            [GO:0003143 "embryonic heart tube morphogenesis" evidence=ISO]
            [GO:0003151 "outflow tract morphogenesis" evidence=IEA;ISO]
            [GO:0003308 "negative regulation of Wnt receptor signaling pathway
            involved in heart development" evidence=IEA;ISO] [GO:0003674
            "molecular_function" evidence=ND] [GO:0003677 "DNA binding"
            evidence=ISO] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=ISO] [GO:0003705 "RNA
            polymerase II distal enhancer sequence-specific DNA binding
            transcription factor activity" evidence=IEA;ISO] [GO:0003713
            "transcription coactivator activity" evidence=IEA;ISO] [GO:0005575
            "cellular_component" evidence=ND] [GO:0005634 "nucleus"
            evidence=ISO] [GO:0005667 "transcription factor complex"
            evidence=IEA;ISO] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=ISO] [GO:0007283 "spermatogenesis"
            evidence=IEA;ISO] [GO:0007369 "gastrulation" evidence=ISO]
            [GO:0007492 "endoderm development" evidence=ISO] [GO:0007493
            "endodermal cell fate determination" evidence=IEA;ISO] [GO:0008013
            "beta-catenin binding" evidence=IEA;ISO] [GO:0008134 "transcription
            factor binding" evidence=IEA;ISO] [GO:0008150 "biological_process"
            evidence=ND] [GO:0010628 "positive regulation of gene expression"
            evidence=ISO] [GO:0021903 "rostrocaudal neural tube patterning"
            evidence=IEA;ISO] [GO:0023019 "signal transduction involved in
            regulation of gene expression" evidence=IEA;ISO] [GO:0030178
            "negative regulation of Wnt receptor signaling pathway"
            evidence=ISO] [GO:0030308 "negative regulation of cell growth"
            evidence=IEA;ISO] [GO:0031648 "protein destabilization"
            evidence=IEA;ISO] [GO:0035050 "embryonic heart tube development"
            evidence=ISO] [GO:0042074 "cell migration involved in gastrulation"
            evidence=IEA;ISO] [GO:0042661 "regulation of mesodermal cell fate
            specification" evidence=ISO] [GO:0042662 "negative regulation of
            mesodermal cell fate specification" evidence=IEA;ISO] [GO:0042789
            "mRNA transcription from RNA polymerase II promoter" evidence=ISO]
            [GO:0043565 "sequence-specific DNA binding" evidence=IEA;ISO]
            [GO:0044212 "transcription regulatory region DNA binding"
            evidence=IEA;ISO] [GO:0045595 "regulation of cell differentiation"
            evidence=ISO] [GO:0045597 "positive regulation of cell
            differentiation" evidence=IEA;ISO] [GO:0045732 "positive regulation
            of protein catabolic process" evidence=IEA;ISO] [GO:0045893
            "positive regulation of transcription, DNA-dependent" evidence=ISO]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IEA;ISO] [GO:0045995 "regulation
            of embryonic development" evidence=ISO] [GO:0048568 "embryonic
            organ development" evidence=IEA;ISO] [GO:0048617 "embryonic foregut
            morphogenesis" evidence=IEA;ISO] [GO:0048643 "positive regulation
            of skeletal muscle tissue development" evidence=IEA;ISO]
            [GO:0048863 "stem cell differentiation" evidence=ISO] [GO:0048866
            "stem cell fate specification" evidence=IEA;ISO] [GO:0050821
            "protein stabilization" evidence=IEA;ISO] [GO:0060070 "canonical
            Wnt receptor signaling pathway" evidence=IEA;ISO] [GO:0060214
            "endocardium formation" evidence=IEA;ISO] [GO:0060807 "regulation
            of transcription from RNA polymerase II promoter involved in
            definitive endodermal cell fate specification" evidence=IEA;ISO]
            [GO:0060913 "cardiac cell fate determination" evidence=IEA;ISO]
            [GO:0060956 "endocardial cell differentiation" evidence=IEA;ISO]
            [GO:0061009 "common bile duct development" evidence=IEA;ISO]
            [GO:0061010 "gall bladder development" evidence=IEA;ISO]
            [GO:0061031 "endodermal digestive tract morphogenesis"
            evidence=IEA;ISO] [GO:0072001 "renal system development"
            evidence=IEA;ISO] [GO:0072091 "regulation of stem cell
            proliferation" evidence=IEA;ISO] [GO:0090090 "negative regulation
            of canonical Wnt receptor signaling pathway" evidence=IEA;ISO]
            [GO:2000035 "regulation of stem cell division" evidence=IEA;ISO]
            [GO:2000043 "regulation of cardiac cell fate specification"
            evidence=IEA;ISO] InterPro:IPR009071 Pfam:PF00505 RGD:1305371
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            EMBL:CH473984 KO:K04495 InterPro:IPR021934 Pfam:PF12067
            PROSITE:PS51516 GeneTree:ENSGT00670000097649 CTD:64321 OMA:ALPCRDG
            RefSeq:NP_001101372.1 UniGene:Rn.7884 Ensembl:ENSRNOT00000033116
            GeneID:312936 KEGG:rno:312936 NextBio:665393 Uniprot:G3V923
        Length = 423

 Score = 103 (41.3 bits), Expect = 7.6e-05, P = 7.6e-05
 Identities = 19/61 (31%), Positives = 39/61 (63%)

Query:    43 KRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAE 102
             +RP++A+ ++ +D RK   +  PD  + A + K  G+ WK+++ AEK P+V++A   + +
Sbjct:    69 RRPMNAFMVWAKDERKRLAQQNPDLHN-AELSKMLGKSWKALTLAEKRPFVEEAERLRVQ 127

Query:   103 Y 103
             +
Sbjct:   128 H 128


>ASPGD|ASPL0000054741 [details] [associations]
            symbol:AN10103 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0003674 "molecular_function"
            evidence=ND] InterPro:IPR009071 Pfam:PF00505 EMBL:BN001308
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            EnsemblFungi:CADANIAT00002264 HOGENOM:HOG000211356 OMA:LRLYNAR
            Uniprot:C8VTF1
        Length = 297

 Score = 100 (40.3 bits), Expect = 9.0e-05, P = 9.0e-05
 Identities = 30/113 (26%), Positives = 46/113 (40%)

Query:    38 DSNAPKRPLSAYFIFMEDFRKSFKESF-PDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKA 96
             D NAPKR L+ +F++M   R    E   PD K    +   G ++W  M +++K  + +  
Sbjct:    97 DPNAPKRTLTPFFLYMHHNRARIAEELGPDAKP-KDVSNEGTRRWAEMPDSQKEVWKKLY 155

Query:    97 LNKKAEYELALEAYKKQLNDNGAGVSEDSWKXXXXXXXXXXXXXEINDEAEQE 149
              +  A Y   + AYK      G     D                E +DE E+E
Sbjct:   156 ADNLAAYREKVAAYKA-----GLPFDRDDNDKAADQLHLDVAAAEASDEEEEE 203


>UNIPROTKB|E9PKP7 [details] [associations]
            symbol:UBTF "Nucleolar transcription factor 1" species:9606
            "Homo sapiens" [GO:0005730 "nucleolus" evidence=IDA]
            InterPro:IPR009071 Pfam:PF00505 GO:GO:0005730 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AC004596
            Pfam:PF09011 HGNC:HGNC:12511 ChiTaRS:UBTF IPI:IPI00979797
            ProteinModelPortal:E9PKP7 SMR:E9PKP7 Ensembl:ENST00000527034
            ArrayExpress:E9PKP7 Bgee:E9PKP7 Uniprot:E9PKP7
        Length = 745

 Score = 105 (42.0 bits), Expect = 0.00010, P = 0.00010
 Identities = 24/66 (36%), Positives = 37/66 (56%)

Query:    39 SNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALN 98
             S  PKRP+SA FIF E+ R+  +E  P+  S + + +   + W  +SE +KA Y  +   
Sbjct:   367 SEKPKRPVSAMFIFSEEKRRQLQEERPE-LSESELTRLLARMWNDLSEKKKAKYKAREAA 425

Query:    99 KKAEYE 104
              KA+ E
Sbjct:   426 LKAQSE 431


>UNIPROTKB|P17480 [details] [associations]
            symbol:UBTF "Nucleolar transcription factor 1" species:9606
            "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0001832
            "blastocyst growth" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0007566 "embryo implantation" evidence=IEA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0045943 "positive
            regulation of transcription from RNA polymerase I promoter"
            evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS;IDA] [GO:0006356
            "regulation of transcription from RNA polymerase I promoter"
            evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006360
            "transcription from RNA polymerase I promoter" evidence=TAS]
            [GO:0006361 "transcription initiation from RNA polymerase I
            promoter" evidence=TAS] [GO:0006362 "transcription elongation from
            RNA polymerase I promoter" evidence=TAS] [GO:0006363 "termination
            of RNA polymerase I transcription" evidence=TAS] [GO:0010467 "gene
            expression" evidence=TAS] Reactome:REACT_71 InterPro:IPR009071
            Pfam:PF00505 GO:GO:0005654 GO:GO:0005730 GO:GO:0003677
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            Reactome:REACT_1788 GO:GO:0006363 GO:GO:0006362 GO:GO:0006361
            Pfam:PF09011 GO:GO:0045943 KO:K09273 eggNOG:NOG327891
            HOVERGEN:HBG008708 EMBL:X53390 EMBL:X53461 EMBL:X56687
            EMBL:AK291733 EMBL:AK292518 EMBL:BC042297 IPI:IPI00014533
            IPI:IPI00220833 PIR:S09318 PIR:S18193 RefSeq:NP_001070151.1
            RefSeq:NP_001070152.1 RefSeq:NP_055048.1 UniGene:Hs.89781 PDB:1K99
            PDB:1L8Y PDB:1L8Z PDB:2HDZ PDBsum:1K99 PDBsum:1L8Y PDBsum:1L8Z
            PDBsum:2HDZ ProteinModelPortal:P17480 SMR:P17480 DIP:DIP-640N
            IntAct:P17480 MINT:MINT-1348764 STRING:P17480 PhosphoSite:P17480
            DMDM:136652 PaxDb:P17480 PRIDE:P17480 Ensembl:ENST00000302904
            Ensembl:ENST00000343638 Ensembl:ENST00000393606
            Ensembl:ENST00000436088 Ensembl:ENST00000526094
            Ensembl:ENST00000529383 Ensembl:ENST00000533177 GeneID:7343
            KEGG:hsa:7343 UCSC:uc002igc.3 UCSC:uc010czs.3 CTD:7343
            GeneCards:GC17M042282 HGNC:HGNC:12511 HPA:CAB004611 HPA:HPA006385
            MIM:600673 neXtProt:NX_P17480 PharmGKB:PA37158 HOGENOM:HOG000232068
            InParanoid:P17480 OMA:CSQRWKL OrthoDB:EOG4V9TQ9 PhylomeDB:P17480
            ChiTaRS:UBTF EvolutionaryTrace:P17480 GenomeRNAi:7343 NextBio:28746
            ArrayExpress:P17480 Bgee:P17480 CleanEx:HS_UBTF
            Genevestigator:P17480 GermOnline:ENSG00000108312 Uniprot:P17480
        Length = 764

 Score = 105 (42.0 bits), Expect = 0.00010, P = 0.00010
 Identities = 24/66 (36%), Positives = 37/66 (56%)

Query:    39 SNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALN 98
             S  PKRP+SA FIF E+ R+  +E  P+  S + + +   + W  +SE +KA Y  +   
Sbjct:   404 SEKPKRPVSAMFIFSEEKRRQLQEERPE-LSESELTRLLARMWNDLSEKKKAKYKAREAA 462

Query:    99 KKAEYE 104
              KA+ E
Sbjct:   463 LKAQSE 468


>RGD|3927 [details] [associations]
            symbol:Ubtf "upstream binding transcription factor, RNA polymerase
          I" species:10116 "Rattus norvegicus" [GO:0000183 "chromatin silencing
          at rDNA" evidence=IEA;ISO] [GO:0003677 "DNA binding" evidence=IEA]
          [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
          evidence=ISO;ISS] [GO:0006351 "transcription, DNA-dependent"
          evidence=IEA] [GO:0045943 "positive regulation of transcription from
          RNA polymerase I promoter" evidence=ISO;ISS] InterPro:IPR009071
          Pfam:PF00505 RGD:3927 GO:GO:0005730 GO:GO:0003677 GO:GO:0006351
          Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
          GO:GO:0000183 Pfam:PF09011 GO:GO:0045943 KO:K09273 eggNOG:NOG327891
          HOVERGEN:HBG008708 CTD:7343 HOGENOM:HOG000232068 OMA:CSQRWKL
          OrthoDB:EOG4V9TQ9 EMBL:M61726 EMBL:M61725 IPI:IPI00194555
          IPI:IPI00388681 PIR:A40439 PIR:B40439 RefSeq:NP_001099193.2
          RefSeq:NP_001121162.1 UniGene:Rn.22469 ProteinModelPortal:P25977
          SMR:P25977 STRING:P25977 PhosphoSite:P25977 PRIDE:P25977
          Ensembl:ENSRNOT00000048418 Ensembl:ENSRNOT00000064283 GeneID:25574
          KEGG:rno:25574 UCSC:RGD:3927 GeneTree:ENSGT00530000063934
          InParanoid:P25977 NextBio:607201 ArrayExpress:P25977
          Genevestigator:P25977 GermOnline:ENSRNOG00000020937 Uniprot:P25977
        Length = 764

 Score = 105 (42.0 bits), Expect = 0.00010, P = 0.00010
 Identities = 24/66 (36%), Positives = 37/66 (56%)

Query:    39 SNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALN 98
             S  PKRP+SA FIF E+ R+  +E  P+  S + + +   + W  +SE +KA Y  +   
Sbjct:   404 SEKPKRPVSAMFIFSEEKRRQLQEERPE-LSESELTRLLARMWNDLSEKKKAKYKAREAA 462

Query:    99 KKAEYE 104
              KA+ E
Sbjct:   463 LKAQSE 468


>UNIPROTKB|O42601 [details] [associations]
            symbol:sox17b.1 "Transcription factor Sox-17-beta.1"
            species:8355 "Xenopus laevis" [GO:0000122 "negative regulation of
            transcription from RNA polymerase II promoter" evidence=IMP]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0007492 "endoderm
            development" evidence=IMP] [GO:0007494 "midgut development"
            evidence=IMP] [GO:0008013 "beta-catenin binding" evidence=IDA]
            [GO:0030178 "negative regulation of Wnt receptor signaling pathway"
            evidence=IGI] [GO:0043565 "sequence-specific DNA binding"
            evidence=IDA] [GO:0045893 "positive regulation of transcription,
            DNA-dependent" evidence=IMP] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=IMP]
            InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634 GO:GO:0016055
            GO:GO:0043565 GO:GO:0045944 GO:GO:0006351 GO:GO:0007494
            GO:GO:0000122 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0008013 GO:GO:0007492 GO:GO:0030178
            GO:GO:0007369 HSSP:P48431 InterPro:IPR021934 Pfam:PF12067
            PROSITE:PS51516 EMBL:AJ001742 EMBL:BC070615 RefSeq:NP_001081633.1
            UniGene:Xl.44 ProteinModelPortal:O42601 SMR:O42601 GeneID:397967
            KEGG:xla:397967 CTD:397967 Xenbase:XB-GENE-6252148 Uniprot:O42601
        Length = 373

 Score = 101 (40.6 bits), Expect = 0.00010, P = 0.00010
 Identities = 21/69 (30%), Positives = 40/69 (57%)

Query:    43 KRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAE 102
             +RP++A+ ++ +D RK   +  PD  + A + K  G+ WKS++ A K P+V++A   + +
Sbjct:    59 RRPMNAFMVWAKDERKRLAQQNPDLHN-AELSKMLGKSWKSLTLATKRPFVEEAERLRVQ 117

Query:   103 YELALEAYK 111
             +      YK
Sbjct:   118 HIQDYPDYK 126


>UNIPROTKB|F1NFP0 [details] [associations]
            symbol:SOX7 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003705 "RNA polymerase II distal enhancer
            sequence-specific DNA binding transcription factor activity"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0043565 "sequence-specific DNA
            binding" evidence=IEA] [GO:0044212 "transcription regulatory region
            DNA binding" evidence=IEA] [GO:0045893 "positive regulation of
            transcription, DNA-dependent" evidence=IEA] InterPro:IPR009071
            Pfam:PF00505 GO:GO:0005634 GO:GO:0005737 GO:GO:0045893
            GO:GO:0043565 GO:GO:0003705 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0044212 InterPro:IPR021934
            Pfam:PF12067 PROSITE:PS51516 GeneTree:ENSGT00670000097649
            OMA:ECPALEA EMBL:AADN02018316 IPI:IPI00684202
            Ensembl:ENSGALT00000026870 Uniprot:F1NFP0
        Length = 397

 Score = 101 (40.6 bits), Expect = 0.00011, P = 0.00011
 Identities = 21/69 (30%), Positives = 40/69 (57%)

Query:    43 KRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAE 102
             +RP++A+ ++ +D RK      PD  + A + K  G+ WK++S ++K PYV++A   + +
Sbjct:    62 RRPMNAFMVWAKDERKRLAVQNPDLHN-AELSKMLGKSWKALSLSQKRPYVEEAERLRVK 120

Query:   103 YELALEAYK 111
             +      YK
Sbjct:   121 HMQDYPNYK 129


>UNIPROTKB|C9J8X5 [details] [associations]
            symbol:HMG20B "SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin subfamily E member
            1-related" species:9606 "Homo sapiens" [GO:0033234 "negative
            regulation of protein sumoylation" evidence=IEA] [GO:0045666
            "positive regulation of neuron differentiation" evidence=IEA]
            [GO:0046982 "protein heterodimerization activity" evidence=IEA]
            InterPro:IPR009071 Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AC005786 HOGENOM:HOG000247029
            OrthoDB:EOG4G7C05 HGNC:HGNC:5002 ChiTaRS:HMG20B EMBL:AC116968
            IPI:IPI00877739 ProteinModelPortal:C9J8X5 SMR:C9J8X5 STRING:C9J8X5
            Ensembl:ENST00000416526 ArrayExpress:C9J8X5 Bgee:C9J8X5
            Uniprot:C9J8X5
        Length = 215

 Score = 99 (39.9 bits), Expect = 0.00011, P = 0.00011
 Identities = 21/73 (28%), Positives = 36/73 (49%)

Query:    40 NAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNK 99
             N PK P++ Y  F+ + R+  +   PD      + K  G +W  +   EK  Y+ +A  +
Sbjct:    68 NGPKAPVTGYVRFLNERREQIRTRHPD-LPFPEITKMLGAEWSKLQPTEKQRYLDEAERE 126

Query:   100 KAEYELALEAYKK 112
             K +Y   L AY++
Sbjct:   127 KQQYMKELRAYQQ 139


>ZFIN|ZDB-GENE-040426-1274 [details] [associations]
            symbol:sox4b "SRY-box containing gene 4b"
            species:7955 "Danio rerio" [GO:0031018 "endocrine pancreas
            development" evidence=IMP] InterPro:IPR009071 Pfam:PF00505
            ZFIN:ZDB-GENE-040426-1274 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0031018 HOVERGEN:HBG005040
            InterPro:IPR017386 PIRSF:PIRSF038098 HOGENOM:HOG000231874
            EMBL:AY369082 IPI:IPI00510524 UniGene:Dr.151812
            ProteinModelPortal:Q6UJB6 SMR:Q6UJB6 STRING:Q6UJB6
            InParanoid:Q6UJB6 ArrayExpress:Q6UJB6 Uniprot:Q6UJB6
        Length = 342

 Score = 100 (40.3 bits), Expect = 0.00012, P = 0.00012
 Identities = 22/85 (25%), Positives = 47/85 (55%)

Query:    43 KRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAE 102
             KRP++A+ ++ +  R+   E  PD  + A + K  G++WK + + +K P++++A   + +
Sbjct:    56 KRPMNAFMVWSQIERRKIMEQSPDMHN-AEISKRLGKRWKLLKDGDKIPFIREAERLRLK 114

Query:   103 YELALEAYK----KQLNDNGAGVSE 123
             +      YK    K++  +G+  SE
Sbjct:   115 HMADYPDYKYRPRKKVKSSGSKPSE 139


>UNIPROTKB|O73668 [details] [associations]
            symbol:Sox9 "SOX9" species:9031 "Gallus gallus" [GO:0001046
            "core promoter sequence-specific DNA binding" evidence=IEA]
            [GO:0001077 "RNA polymerase II core promoter proximal region
            sequence-specific DNA binding transcription factor activity
            involved in positive regulation of transcription" evidence=IEA]
            [GO:0001158 "enhancer sequence-specific DNA binding" evidence=IEA]
            [GO:0001502 "cartilage condensation" evidence=IEA] [GO:0001503
            "ossification" evidence=IEA] [GO:0001658 "branching involved in
            ureteric bud morphogenesis" evidence=IEA] [GO:0001708 "cell fate
            specification" evidence=IEA] [GO:0001837 "epithelial to mesenchymal
            transition" evidence=IEA] [GO:0001934 "positive regulation of
            protein phosphorylation" evidence=IEA] [GO:0001942 "hair follicle
            development" evidence=IEA] [GO:0002053 "positive regulation of
            mesenchymal cell proliferation" evidence=IEA] [GO:0002683 "negative
            regulation of immune system process" evidence=IEA] [GO:0003188
            "heart valve formation" evidence=IEA] [GO:0003203 "endocardial
            cushion morphogenesis" evidence=IEA] [GO:0003413 "chondrocyte
            differentiation involved in endochondral bone morphogenesis"
            evidence=IEA] [GO:0003415 "chondrocyte hypertrophy" evidence=IEA]
            [GO:0003682 "chromatin binding" evidence=IEA] [GO:0003705 "RNA
            polymerase II distal enhancer sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0004672 "protein
            kinase activity" evidence=IEA] [GO:0005667 "transcription factor
            complex" evidence=IEA] [GO:0006334 "nucleosome assembly"
            evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
            [GO:0006461 "protein complex assembly" evidence=IEA] [GO:0007173
            "epidermal growth factor receptor signaling pathway" evidence=IEA]
            [GO:0007283 "spermatogenesis" evidence=IEA] [GO:0008013
            "beta-catenin binding" evidence=IEA] [GO:0010564 "regulation of
            cell cycle process" evidence=IEA] [GO:0010634 "positive regulation
            of epithelial cell migration" evidence=IEA] [GO:0014032 "neural
            crest cell development" evidence=IEA] [GO:0014068 "positive
            regulation of phosphatidylinositol 3-kinase cascade" evidence=IEA]
            [GO:0019100 "male germ-line sex determination" evidence=IEA]
            [GO:0019933 "cAMP-mediated signaling" evidence=IEA] [GO:0030155
            "regulation of cell adhesion" evidence=IEA] [GO:0030198
            "extracellular matrix organization" evidence=IEA] [GO:0030502
            "negative regulation of bone mineralization" evidence=IEA]
            [GO:0030858 "positive regulation of epithelial cell
            differentiation" evidence=IEA] [GO:0030879 "mammary gland
            development" evidence=IEA] [GO:0030903 "notochord development"
            evidence=IEA] [GO:0030916 "otic vesicle formation" evidence=IEA]
            [GO:0031018 "endocrine pancreas development" evidence=IEA]
            [GO:0032331 "negative regulation of chondrocyte differentiation"
            evidence=IEA] [GO:0032332 "positive regulation of chondrocyte
            differentiation" evidence=IEA] [GO:0034236 "protein kinase A
            catalytic subunit binding" evidence=IEA] [GO:0035019 "somatic stem
            cell maintenance" evidence=IEA] [GO:0035622 "intrahepatic bile duct
            development" evidence=IEA] [GO:0043066 "negative regulation of
            apoptotic process" evidence=IEA] [GO:0043491 "protein kinase B
            signaling cascade" evidence=IEA] [GO:0045662 "negative regulation
            of myoblast differentiation" evidence=IEA] [GO:0045732 "positive
            regulation of protein catabolic process" evidence=IEA] [GO:0045892
            "negative regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0046533 "negative regulation of photoreceptor cell
            differentiation" evidence=IEA] [GO:0048709 "oligodendrocyte
            differentiation" evidence=IEA] [GO:0050679 "positive regulation of
            epithelial cell proliferation" evidence=IEA] [GO:0050680 "negative
            regulation of epithelial cell proliferation" evidence=IEA]
            [GO:0060009 "Sertoli cell development" evidence=IEA] [GO:0060018
            "astrocyte fate commitment" evidence=IEA] [GO:0060174 "limb bud
            formation" evidence=IEA] [GO:0060221 "retinal rod cell
            differentiation" evidence=IEA] [GO:0060517 "epithelial cell
            proliferation involved in prostatic bud elongation" evidence=IEA]
            [GO:0060729 "intestinal epithelial structure maintenance"
            evidence=IEA] [GO:0060784 "regulation of cell proliferation
            involved in tissue homeostasis" evidence=IEA] [GO:0061036 "positive
            regulation of cartilage development" evidence=IEA] [GO:0070371
            "ERK1 and ERK2 cascade" evidence=IEA] [GO:0071260 "cellular
            response to mechanical stimulus" evidence=IEA] [GO:0071300
            "cellular response to retinoic acid" evidence=IEA] [GO:0071347
            "cellular response to interleukin-1" evidence=IEA] [GO:0071364
            "cellular response to epidermal growth factor stimulus"
            evidence=IEA] [GO:0071504 "cellular response to heparin"
            evidence=IEA] [GO:0071560 "cellular response to transforming growth
            factor beta stimulus" evidence=IEA] [GO:0072034 "renal vesicle
            induction" evidence=IEA] [GO:0072190 "ureter urothelium
            development" evidence=IEA] [GO:0072197 "ureter morphogenesis"
            evidence=IEA] [GO:0072289 "metanephric nephron tubule formation"
            evidence=IEA] [GO:0090090 "negative regulation of canonical Wnt
            receptor signaling pathway" evidence=IEA] [GO:0090103 "cochlea
            morphogenesis" evidence=IEA] [GO:0090190 "positive regulation of
            branching involved in ureteric bud morphogenesis" evidence=IEA]
            [GO:2000020 "positive regulation of male gonad development"
            evidence=IEA] [GO:2000138 "positive regulation of cell
            proliferation involved in heart morphogenesis" evidence=IEA]
            [GO:2000741 "positive regulation of mesenchymal stem cell
            differentiation" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
            GO:GO:0001708 GO:GO:0007173 GO:GO:0045892 GO:GO:0043066
            GO:GO:0006461 GO:GO:0030155 GO:GO:0071560 GO:GO:0019933
            GO:GO:0070371 GO:GO:0071300 GO:GO:0030198 GO:GO:0014068
            GO:GO:0003682 GO:GO:0003705 GO:GO:0001077 GO:GO:0006338
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0004672 GO:GO:0071504 GO:GO:0032332 GO:GO:0090090
            GO:GO:0071260 GO:GO:0001934 GO:GO:0090190 GO:GO:0071364
            GO:GO:0043491 GO:GO:0045732 GO:GO:0050680 GO:GO:0071347
            GO:GO:0001158 GO:GO:0030858 GO:GO:0010634 GO:GO:0016585
            GO:GO:0006334 GO:GO:0050679 GO:GO:0002053 GO:GO:0001046
            GO:GO:0030502 GO:GO:2000138 GO:GO:0061036 GO:GO:0032331
            GO:GO:0045662 GO:GO:2000020 GO:GO:0010564
            GeneTree:ENSGT00670000097649 HOVERGEN:HBG002061 KO:K09270
            InterPro:IPR022151 Pfam:PF12444 HSSP:P48432 GO:GO:2000741
            GO:GO:0072034 GO:GO:0002683 CTD:6662 UniGene:Gga.890
            EMBL:AADN02030063 EMBL:AB012236 IPI:IPI00603266 RefSeq:NP_989612.1
            SMR:O73668 STRING:O73668 Ensembl:ENSGALT00000006994 GeneID:374148
            KEGG:gga:374148 InParanoid:O73668 NextBio:20813662 Uniprot:O73668
        Length = 494

 Score = 102 (41.0 bits), Expect = 0.00012, P = 0.00012
 Identities = 21/76 (27%), Positives = 44/76 (57%)

Query:    40 NAP--KRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             N P  KRP++A+ ++ +  R+   + +P   + A + K  G+ W+ ++E+EK P+V++A 
Sbjct:   101 NKPHVKRPMNAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLNESEKRPFVEEAE 159

Query:    98 NKKAEYELALEAYKKQ 113
               + +++     YK Q
Sbjct:   160 RLRVQHKKDHPDYKYQ 175


>UNIPROTKB|P48434 [details] [associations]
            symbol:SOX9 "Transcription factor SOX-9" species:9031
            "Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0008584 "male gonad
            development" evidence=IEP] [GO:0001658 "branching involved in
            ureteric bud morphogenesis" evidence=IEP] [GO:0003170 "heart valve
            development" evidence=IEP] [GO:0071300 "cellular response to
            retinoic acid" evidence=IEP] InterPro:IPR009071 Pfam:PF00505
            GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 GO:GO:0071300
            GO:GO:0006351 GO:GO:0008584 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0001658 GO:GO:0003170
            eggNOG:NOG295709 HOGENOM:HOG000108876 HOVERGEN:HBG002061
            InterPro:IPR022151 Pfam:PF12444 OrthoDB:EOG4TXBRZ EMBL:U12533
            IPI:IPI00589733 UniGene:Gga.890 ProteinModelPortal:P48434
            SMR:P48434 STRING:P48434 InParanoid:P48434 Uniprot:P48434
        Length = 494

 Score = 102 (41.0 bits), Expect = 0.00012, P = 0.00012
 Identities = 21/76 (27%), Positives = 44/76 (57%)

Query:    40 NAP--KRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             N P  KRP++A+ ++ +  R+   + +P   + A + K  G+ W+ ++E+EK P+V++A 
Sbjct:   102 NKPHVKRPMNAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLNESEKRPFVEEAE 160

Query:    98 NKKAEYELALEAYKKQ 113
               + +++     YK Q
Sbjct:   161 RLRVQHKKDHPDYKYQ 176


>UNIPROTKB|F1P307 [details] [associations]
            symbol:SOX9 "Transcription factor SOX-9" species:9031
            "Gallus gallus" [GO:0001046 "core promoter sequence-specific DNA
            binding" evidence=IEA] [GO:0001077 "RNA polymerase II core promoter
            proximal region sequence-specific DNA binding transcription factor
            activity involved in positive regulation of transcription"
            evidence=IEA] [GO:0001158 "enhancer sequence-specific DNA binding"
            evidence=IEA] [GO:0001502 "cartilage condensation" evidence=IEA]
            [GO:0001503 "ossification" evidence=IEA] [GO:0001658 "branching
            involved in ureteric bud morphogenesis" evidence=IEA] [GO:0001708
            "cell fate specification" evidence=IEA] [GO:0001837 "epithelial to
            mesenchymal transition" evidence=IEA] [GO:0001934 "positive
            regulation of protein phosphorylation" evidence=IEA] [GO:0001942
            "hair follicle development" evidence=IEA] [GO:0002053 "positive
            regulation of mesenchymal cell proliferation" evidence=IEA]
            [GO:0002683 "negative regulation of immune system process"
            evidence=IEA] [GO:0003188 "heart valve formation" evidence=IEA]
            [GO:0003203 "endocardial cushion morphogenesis" evidence=IEA]
            [GO:0003413 "chondrocyte differentiation involved in endochondral
            bone morphogenesis" evidence=IEA] [GO:0003415 "chondrocyte
            hypertrophy" evidence=IEA] [GO:0003682 "chromatin binding"
            evidence=IEA] [GO:0003705 "RNA polymerase II distal enhancer
            sequence-specific DNA binding transcription factor activity"
            evidence=IEA] [GO:0004672 "protein kinase activity" evidence=IEA]
            [GO:0005667 "transcription factor complex" evidence=IEA]
            [GO:0006334 "nucleosome assembly" evidence=IEA] [GO:0006338
            "chromatin remodeling" evidence=IEA] [GO:0006461 "protein complex
            assembly" evidence=IEA] [GO:0007173 "epidermal growth factor
            receptor signaling pathway" evidence=IEA] [GO:0007283
            "spermatogenesis" evidence=IEA] [GO:0008013 "beta-catenin binding"
            evidence=IEA] [GO:0010564 "regulation of cell cycle process"
            evidence=IEA] [GO:0010634 "positive regulation of epithelial cell
            migration" evidence=IEA] [GO:0014032 "neural crest cell
            development" evidence=IEA] [GO:0014068 "positive regulation of
            phosphatidylinositol 3-kinase cascade" evidence=IEA] [GO:0019100
            "male germ-line sex determination" evidence=IEA] [GO:0019933
            "cAMP-mediated signaling" evidence=IEA] [GO:0030155 "regulation of
            cell adhesion" evidence=IEA] [GO:0030198 "extracellular matrix
            organization" evidence=IEA] [GO:0030502 "negative regulation of
            bone mineralization" evidence=IEA] [GO:0030858 "positive regulation
            of epithelial cell differentiation" evidence=IEA] [GO:0030879
            "mammary gland development" evidence=IEA] [GO:0030903 "notochord
            development" evidence=IEA] [GO:0030916 "otic vesicle formation"
            evidence=IEA] [GO:0031018 "endocrine pancreas development"
            evidence=IEA] [GO:0032331 "negative regulation of chondrocyte
            differentiation" evidence=IEA] [GO:0032332 "positive regulation of
            chondrocyte differentiation" evidence=IEA] [GO:0034236 "protein
            kinase A catalytic subunit binding" evidence=IEA] [GO:0035019
            "somatic stem cell maintenance" evidence=IEA] [GO:0035622
            "intrahepatic bile duct development" evidence=IEA] [GO:0043066
            "negative regulation of apoptotic process" evidence=IEA]
            [GO:0043491 "protein kinase B signaling cascade" evidence=IEA]
            [GO:0045662 "negative regulation of myoblast differentiation"
            evidence=IEA] [GO:0045732 "positive regulation of protein catabolic
            process" evidence=IEA] [GO:0045892 "negative regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0046533 "negative
            regulation of photoreceptor cell differentiation" evidence=IEA]
            [GO:0048709 "oligodendrocyte differentiation" evidence=IEA]
            [GO:0050679 "positive regulation of epithelial cell proliferation"
            evidence=IEA] [GO:0050680 "negative regulation of epithelial cell
            proliferation" evidence=IEA] [GO:0060009 "Sertoli cell development"
            evidence=IEA] [GO:0060018 "astrocyte fate commitment" evidence=IEA]
            [GO:0060174 "limb bud formation" evidence=IEA] [GO:0060221 "retinal
            rod cell differentiation" evidence=IEA] [GO:0060517 "epithelial
            cell proliferation involved in prostatic bud elongation"
            evidence=IEA] [GO:0060729 "intestinal epithelial structure
            maintenance" evidence=IEA] [GO:0060784 "regulation of cell
            proliferation involved in tissue homeostasis" evidence=IEA]
            [GO:0061036 "positive regulation of cartilage development"
            evidence=IEA] [GO:0070371 "ERK1 and ERK2 cascade" evidence=IEA]
            [GO:0071260 "cellular response to mechanical stimulus"
            evidence=IEA] [GO:0071300 "cellular response to retinoic acid"
            evidence=IEA] [GO:0071347 "cellular response to interleukin-1"
            evidence=IEA] [GO:0071364 "cellular response to epidermal growth
            factor stimulus" evidence=IEA] [GO:0071504 "cellular response to
            heparin" evidence=IEA] [GO:0071560 "cellular response to
            transforming growth factor beta stimulus" evidence=IEA] [GO:0072034
            "renal vesicle induction" evidence=IEA] [GO:0072190 "ureter
            urothelium development" evidence=IEA] [GO:0072197 "ureter
            morphogenesis" evidence=IEA] [GO:0072289 "metanephric nephron
            tubule formation" evidence=IEA] [GO:0090090 "negative regulation of
            canonical Wnt receptor signaling pathway" evidence=IEA] [GO:0090103
            "cochlea morphogenesis" evidence=IEA] [GO:0090190 "positive
            regulation of branching involved in ureteric bud morphogenesis"
            evidence=IEA] [GO:2000020 "positive regulation of male gonad
            development" evidence=IEA] [GO:2000138 "positive regulation of cell
            proliferation involved in heart morphogenesis" evidence=IEA]
            [GO:2000741 "positive regulation of mesenchymal stem cell
            differentiation" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
            GO:GO:0001708 GO:GO:0007173 GO:GO:0045892 GO:GO:0043066
            GO:GO:0006461 GO:GO:0030155 GO:GO:0071560 GO:GO:0019933
            GO:GO:0070371 GO:GO:0071300 GO:GO:0030198 GO:GO:0014068
            GO:GO:0003682 GO:GO:0003705 GO:GO:0001077 GO:GO:0006338
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0004672 GO:GO:0071504 GO:GO:0032332 GO:GO:0090090
            GO:GO:0071260 GO:GO:0001934 GO:GO:0090190 GO:GO:0071364
            GO:GO:0043491 GO:GO:0045732 GO:GO:0050680 GO:GO:0071347
            GO:GO:0001158 GO:GO:0030858 GO:GO:0010634 GO:GO:0016585
            GO:GO:0006334 GO:GO:0050679 GO:GO:0002053 GO:GO:0001046
            GO:GO:0030502 GO:GO:2000138 GO:GO:0061036 GO:GO:0032331
            GO:GO:0045662 GO:GO:2000020 GO:GO:0010564
            GeneTree:ENSGT00670000097649 InterPro:IPR022151 Pfam:PF12444
            GO:GO:2000741 GO:GO:0072034 GO:GO:0002683 OMA:GAGHVWM
            EMBL:AADN02030063 IPI:IPI00818672 Ensembl:ENSGALT00000038513
            Uniprot:F1P307
        Length = 496

 Score = 102 (41.0 bits), Expect = 0.00012, P = 0.00012
 Identities = 21/76 (27%), Positives = 44/76 (57%)

Query:    40 NAP--KRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             N P  KRP++A+ ++ +  R+   + +P   + A + K  G+ W+ ++E+EK P+V++A 
Sbjct:   103 NKPHVKRPMNAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLNESEKRPFVEEAE 161

Query:    98 NKKAEYELALEAYKKQ 113
               + +++     YK Q
Sbjct:   162 RLRVQHKKDHPDYKYQ 177


>MGI|MGI:98371 [details] [associations]
            symbol:Sox9 "SRY-box containing gene 9" species:10090 "Mus
            musculus" [GO:0000976 "transcription regulatory region
            sequence-specific DNA binding" evidence=IDA] [GO:0001046 "core
            promoter sequence-specific DNA binding" evidence=ISO] [GO:0001077
            "RNA polymerase II core promoter proximal region sequence-specific
            DNA binding transcription factor activity involved in positive
            regulation of transcription" evidence=ISO;IDA] [GO:0001158
            "enhancer sequence-specific DNA binding" evidence=IDA] [GO:0001501
            "skeletal system development" evidence=ISO] [GO:0001502 "cartilage
            condensation" evidence=IMP] [GO:0001708 "cell fate specification"
            evidence=IMP] [GO:0001837 "epithelial to mesenchymal transition"
            evidence=IMP] [GO:0001894 "tissue homeostasis" evidence=IMP]
            [GO:0001934 "positive regulation of protein phosphorylation"
            evidence=IMP;IDA] [GO:0001942 "hair follicle development"
            evidence=IMP] [GO:0002053 "positive regulation of mesenchymal cell
            proliferation" evidence=IMP] [GO:0002063 "chondrocyte development"
            evidence=IMP] [GO:0002683 "negative regulation of immune system
            process" evidence=IMP] [GO:0003170 "heart valve development"
            evidence=IMP] [GO:0003179 "heart valve morphogenesis" evidence=IMP]
            [GO:0003188 "heart valve formation" evidence=IMP] [GO:0003203
            "endocardial cushion morphogenesis" evidence=IMP] [GO:0003413
            "chondrocyte differentiation involved in endochondral bone
            morphogenesis" evidence=ISO] [GO:0003415 "chondrocyte hypertrophy"
            evidence=IMP] [GO:0003677 "DNA binding" evidence=IDA] [GO:0003682
            "chromatin binding" evidence=ISO] [GO:0003700 "sequence-specific
            DNA binding transcription factor activity" evidence=ISO;IMP;IDA]
            [GO:0003705 "RNA polymerase II distal enhancer sequence-specific
            DNA binding transcription factor activity" evidence=ISO;IDA]
            [GO:0004672 "protein kinase activity" evidence=IMP] [GO:0005515
            "protein binding" evidence=IPI] [GO:0005634 "nucleus"
            evidence=ISO;IDA] [GO:0005667 "transcription factor complex"
            evidence=IPI] [GO:0006334 "nucleosome assembly" evidence=ISO]
            [GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=TAS]
            [GO:0006357 "regulation of transcription from RNA polymerase II
            promoter" evidence=IDA] [GO:0006461 "protein complex assembly"
            evidence=ISO] [GO:0007165 "signal transduction" evidence=IMP]
            [GO:0007173 "epidermal growth factor receptor signaling pathway"
            evidence=IDA] [GO:0007283 "spermatogenesis" evidence=IGI]
            [GO:0007507 "heart development" evidence=IMP] [GO:0008013
            "beta-catenin binding" evidence=IPI] [GO:0008284 "positive
            regulation of cell proliferation" evidence=ISO;IMP] [GO:0008285
            "negative regulation of cell proliferation" evidence=IMP]
            [GO:0008584 "male gonad development" evidence=ISO;IGI;IMP]
            [GO:0010564 "regulation of cell cycle process" evidence=ISO]
            [GO:0010628 "positive regulation of gene expression" evidence=IGI]
            [GO:0010634 "positive regulation of epithelial cell migration"
            evidence=ISO;ISS] [GO:0014032 "neural crest cell development"
            evidence=IMP] [GO:0014068 "positive regulation of
            phosphatidylinositol 3-kinase cascade" evidence=IMP] [GO:0019100
            "male germ-line sex determination" evidence=IMP] [GO:0019933
            "cAMP-mediated signaling" evidence=ISO] [GO:0030154 "cell
            differentiation" evidence=IMP] [GO:0030155 "regulation of cell
            adhesion" evidence=IMP] [GO:0030198 "extracellular matrix
            organization" evidence=IMP] [GO:0030238 "male sex determination"
            evidence=IGI] [GO:0030279 "negative regulation of ossification"
            evidence=IMP] [GO:0030502 "negative regulation of bone
            mineralization" evidence=IMP] [GO:0030858 "positive regulation of
            epithelial cell differentiation" evidence=IMP] [GO:0030916 "otic
            vesicle formation" evidence=IMP] [GO:0031018 "endocrine pancreas
            development" evidence=IMP] [GO:0032331 "negative regulation of
            chondrocyte differentiation" evidence=IMP] [GO:0032332 "positive
            regulation of chondrocyte differentiation" evidence=ISO;IDA;IMP]
            [GO:0034236 "protein kinase A catalytic subunit binding"
            evidence=ISO] [GO:0035019 "somatic stem cell maintenance"
            evidence=IMP] [GO:0035326 "enhancer binding" evidence=ISO;IDA]
            [GO:0035622 "intrahepatic bile duct development" evidence=IMP]
            [GO:0042127 "regulation of cell proliferation" evidence=IMP]
            [GO:0042981 "regulation of apoptotic process" evidence=IMP]
            [GO:0043066 "negative regulation of apoptotic process"
            evidence=ISO;IMP] [GO:0043234 "protein complex" evidence=ISO]
            [GO:0043491 "protein kinase B signaling cascade" evidence=IMP]
            [GO:0043565 "sequence-specific DNA binding" evidence=IDA]
            [GO:0044212 "transcription regulatory region DNA binding"
            evidence=IDA] [GO:0045165 "cell fate commitment" evidence=IGI]
            [GO:0045595 "regulation of cell differentiation" evidence=IMP]
            [GO:0045662 "negative regulation of myoblast differentiation"
            evidence=IDA] [GO:0045732 "positive regulation of protein catabolic
            process" evidence=IDA] [GO:0045892 "negative regulation of
            transcription, DNA-dependent" evidence=ISO;IMP;IDA] [GO:0045893
            "positive regulation of transcription, DNA-dependent"
            evidence=ISO;IMP;IDA] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter"
            evidence=ISO;IGI;IMP;IDA] [GO:0046533 "negative regulation of
            photoreceptor cell differentiation" evidence=IGI] [GO:0048709
            "oligodendrocyte differentiation" evidence=IMP] [GO:0050679
            "positive regulation of epithelial cell proliferation"
            evidence=IMP] [GO:0050680 "negative regulation of epithelial cell
            proliferation" evidence=IMP] [GO:0051216 "cartilage development"
            evidence=IMP] [GO:0060008 "Sertoli cell differentiation"
            evidence=IMP] [GO:0060009 "Sertoli cell development" evidence=IGI]
            [GO:0060018 "astrocyte fate commitment" evidence=IGI] [GO:0060041
            "retina development in camera-type eye" evidence=IGI] [GO:0060221
            "retinal rod cell differentiation" evidence=IGI] [GO:0060350
            "endochondral bone morphogenesis" evidence=IMP] [GO:0060512
            "prostate gland morphogenesis" evidence=IMP] [GO:0060517
            "epithelial cell proliferation involved in prostatic bud
            elongation" evidence=IMP] [GO:0060729 "intestinal epithelial
            structure maintenance" evidence=IMP] [GO:0060784 "regulation of
            cell proliferation involved in tissue homeostasis" evidence=IMP]
            [GO:0061036 "positive regulation of cartilage development"
            evidence=ISO;IDA] [GO:0061138 "morphogenesis of a branching
            epithelium" evidence=IGI] [GO:0070168 "negative regulation of
            biomineral tissue development" evidence=IMP] [GO:0070371 "ERK1 and
            ERK2 cascade" evidence=IDA] [GO:0071260 "cellular response to
            mechanical stimulus" evidence=IDA] [GO:0071300 "cellular response
            to retinoic acid" evidence=IDA] [GO:0071364 "cellular response to
            epidermal growth factor stimulus" evidence=IDA] [GO:0071504
            "cellular response to heparin" evidence=IDA] [GO:0071560 "cellular
            response to transforming growth factor beta stimulus" evidence=ISO]
            [GO:0072034 "renal vesicle induction" evidence=IMP] [GO:0072197
            "ureter morphogenesis" evidence=IGI] [GO:0072289 "metanephric
            nephron tubule formation" evidence=IGI] [GO:0090090 "negative
            regulation of canonical Wnt receptor signaling pathway"
            evidence=IDA] [GO:0090103 "cochlea morphogenesis" evidence=IMP]
            [GO:0090184 "positive regulation of kidney development"
            evidence=IGI] [GO:0090190 "positive regulation of branching
            involved in ureteric bud morphogenesis" evidence=IMP] [GO:2000020
            "positive regulation of male gonad development" evidence=ISO]
            [GO:2000138 "positive regulation of cell proliferation involved in
            heart morphogenesis" evidence=IMP] [GO:2000741 "positive regulation
            of mesenchymal stem cell differentiation" evidence=ISO]
            InterPro:IPR009071 MGI:MGI:98371 Pfam:PF00505 GO:GO:0001708
            GO:GO:0007173 GO:GO:0045892 GO:GO:0043066 GO:GO:0006461
            GO:GO:0030155 GO:GO:0071560 GO:GO:0019933 GO:GO:0070371
            GO:GO:0071300 GO:GO:0030198 GO:GO:0014068 GO:GO:0007283
            GO:GO:0003682 GO:GO:0005667 GO:GO:0003705 GO:GO:0001077
            GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0004672 GO:GO:0071504 GO:GO:0001942
            GO:GO:0032332 GO:GO:0060009 GO:GO:0090090 GO:GO:0071260
            GO:GO:0035019 GO:GO:0001934 GO:GO:0090190 GO:GO:0071364
            GO:GO:0031018 GO:GO:0043491 GO:GO:0014032 GO:GO:0001502
            GO:GO:0045732 GO:GO:0001837 GO:GO:0050680 GO:GO:0001503
            GO:GO:0001658 GO:GO:0071347 GO:GO:0001158 GO:GO:0030858
            GO:GO:0048709 GO:GO:0010634 GO:GO:0016585 GO:GO:0006334
            GO:GO:0003413 GO:GO:0030879 GO:GO:0050679 GO:GO:0002053
            GO:GO:0001046 GO:GO:0030502 GO:GO:2000138 GO:GO:0061036
            GO:GO:0003203 GO:GO:0032331 GO:GO:0045662 GO:GO:0030916
            GO:GO:2000020 GO:GO:0046533 GO:GO:0060174 GO:GO:0030903
            GO:GO:0090103 GO:GO:0010564 GO:GO:0019100 GO:GO:0060018
            GO:GO:0035622 GO:GO:0072190 GO:GO:0072289 GO:GO:0072197
            GO:GO:0003188 eggNOG:NOG295709 GeneTree:ENSGT00670000097649
            HOVERGEN:HBG002061 KO:K09270 InterPro:IPR022151 Pfam:PF12444
            GO:GO:2000741 GO:GO:0072034 GO:GO:0060221 OrthoDB:EOG4TXBRZ
            GO:GO:0003415 GO:GO:0060517 GO:GO:0060729 GO:GO:0002683
            GO:GO:0060784 CTD:6662 OMA:GAGHVWM EMBL:AF421878 EMBL:AK030187
            EMBL:AK049986 EMBL:BC004064 EMBL:BC023796 EMBL:BC023808
            EMBL:BC023953 EMBL:BC024958 EMBL:BC034264 EMBL:Z18958
            IPI:IPI00131219 PIR:S30243 PIR:S52469 RefSeq:NP_035578.3
            UniGene:Mm.286407 ProteinModelPortal:Q04887 SMR:Q04887
            IntAct:Q04887 STRING:Q04887 PhosphoSite:Q04887 PRIDE:Q04887
            Ensembl:ENSMUST00000000579 GeneID:20682 KEGG:mmu:20682
            InParanoid:Q04887 NextBio:299193 Bgee:Q04887 CleanEx:MM_SOX9
            Genevestigator:Q04887 GermOnline:ENSMUSG00000000567 Uniprot:Q04887
        Length = 507

 Score = 102 (41.0 bits), Expect = 0.00013, P = 0.00013
 Identities = 21/76 (27%), Positives = 44/76 (57%)

Query:    40 NAP--KRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             N P  KRP++A+ ++ +  R+   + +P   + A + K  G+ W+ ++E+EK P+V++A 
Sbjct:   101 NKPHVKRPMNAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLNESEKRPFVEEAE 159

Query:    98 NKKAEYELALEAYKKQ 113
               + +++     YK Q
Sbjct:   160 RLRVQHKKDHPDYKYQ 175


>UNIPROTKB|P48436 [details] [associations]
            symbol:SOX9 "Transcription factor SOX-9" species:9606 "Homo
            sapiens" [GO:0001503 "ossification" evidence=IEA] [GO:0001658
            "branching involved in ureteric bud morphogenesis" evidence=IEA]
            [GO:0003188 "heart valve formation" evidence=IEA] [GO:0005667
            "transcription factor complex" evidence=IEA] [GO:0008013
            "beta-catenin binding" evidence=IEA] [GO:0014032 "neural crest cell
            development" evidence=IEA] [GO:0030155 "regulation of cell
            adhesion" evidence=IEA] [GO:0030198 "extracellular matrix
            organization" evidence=IEA] [GO:0030502 "negative regulation of
            bone mineralization" evidence=IEA] [GO:0030879 "mammary gland
            development" evidence=IEA] [GO:0030903 "notochord development"
            evidence=IEA] [GO:0031018 "endocrine pancreas development"
            evidence=IEA] [GO:0035622 "intrahepatic bile duct development"
            evidence=IEA] [GO:0043425 "bHLH transcription factor binding"
            evidence=IEA] [GO:0043491 "protein kinase B signaling cascade"
            evidence=IEA] [GO:0045732 "positive regulation of protein catabolic
            process" evidence=IEA] [GO:0048709 "oligodendrocyte
            differentiation" evidence=IEA] [GO:0060009 "Sertoli cell
            development" evidence=IEA] [GO:0060018 "astrocyte fate commitment"
            evidence=IEA] [GO:0060174 "limb bud formation" evidence=IEA]
            [GO:0072190 "ureter urothelium development" evidence=IEA]
            [GO:0072197 "ureter morphogenesis" evidence=IEA] [GO:2000138
            "positive regulation of cell proliferation involved in heart
            morphogenesis" evidence=IEA] [GO:0008584 "male gonad development"
            evidence=IEP;IMP] [GO:0001708 "cell fate specification"
            evidence=ISS] [GO:0001837 "epithelial to mesenchymal transition"
            evidence=ISS] [GO:0001942 "hair follicle development" evidence=ISS]
            [GO:0002053 "positive regulation of mesenchymal cell proliferation"
            evidence=ISS] [GO:0003203 "endocardial cushion morphogenesis"
            evidence=ISS] [GO:0007283 "spermatogenesis" evidence=ISS]
            [GO:0019100 "male germ-line sex determination" evidence=ISS]
            [GO:0030858 "positive regulation of epithelial cell
            differentiation" evidence=ISS] [GO:0032331 "negative regulation of
            chondrocyte differentiation" evidence=ISS] [GO:0035019 "somatic
            stem cell maintenance" evidence=ISS] [GO:0042127 "regulation of
            cell proliferation" evidence=ISS] [GO:0042981 "regulation of
            apoptotic process" evidence=ISS] [GO:0045662 "negative regulation
            of myoblast differentiation" evidence=ISS] [GO:0046533 "negative
            regulation of photoreceptor cell differentiation" evidence=ISS]
            [GO:0050679 "positive regulation of epithelial cell proliferation"
            evidence=IEP;ISS] [GO:0050680 "negative regulation of epithelial
            cell proliferation" evidence=ISS] [GO:0060008 "Sertoli cell
            differentiation" evidence=ISS] [GO:0060041 "retina development in
            camera-type eye" evidence=ISS] [GO:0060221 "retinal rod cell
            differentiation" evidence=ISS] [GO:0060517 "epithelial cell
            proliferation involved in prostatic bud elongation" evidence=ISS]
            [GO:0060784 "regulation of cell proliferation involved in tissue
            homeostasis" evidence=ISS] [GO:0061138 "morphogenesis of a
            branching epithelium" evidence=ISS] [GO:0072289 "metanephric
            nephron tubule formation" evidence=ISS] [GO:0090090 "negative
            regulation of canonical Wnt receptor signaling pathway"
            evidence=ISS] [GO:0001158 "enhancer sequence-specific DNA binding"
            evidence=ISS] [GO:0001894 "tissue homeostasis" evidence=ISS]
            [GO:0002683 "negative regulation of immune system process"
            evidence=ISS] [GO:0003170 "heart valve development" evidence=ISS]
            [GO:0030279 "negative regulation of ossification" evidence=ISS]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0034236 "protein kinase A
            catalytic subunit binding" evidence=IPI] [GO:0071347 "cellular
            response to interleukin-1" evidence=IEP] [GO:0030850 "prostate
            gland development" evidence=IEP] [GO:0001934 "positive regulation
            of protein phosphorylation" evidence=ISS] [GO:0007173 "epidermal
            growth factor receptor signaling pathway" evidence=ISS] [GO:0070371
            "ERK1 and ERK2 cascade" evidence=ISS] [GO:0071260 "cellular
            response to mechanical stimulus" evidence=ISS] [GO:0071364
            "cellular response to epidermal growth factor stimulus"
            evidence=ISS] [GO:0071504 "cellular response to heparin"
            evidence=ISS] [GO:0003705 "RNA polymerase II distal enhancer
            sequence-specific DNA binding transcription factor activity"
            evidence=IDA] [GO:0001077 "RNA polymerase II core promoter proximal
            region sequence-specific DNA binding transcription factor activity
            involved in positive regulation of transcription" evidence=IDA]
            [GO:0006338 "chromatin remodeling" evidence=IDA] [GO:0003682
            "chromatin binding" evidence=IDA] [GO:0006334 "nucleosome assembly"
            evidence=IDA] [GO:2000741 "positive regulation of mesenchymal stem
            cell differentiation" evidence=IDA] [GO:0032332 "positive
            regulation of chondrocyte differentiation" evidence=IMP;IDA]
            [GO:0071560 "cellular response to transforming growth factor beta
            stimulus" evidence=IDA] [GO:0061036 "positive regulation of
            cartilage development" evidence=IDA] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0043234 "protein complex" evidence=IDA] [GO:0006461 "protein
            complex assembly" evidence=IDA] [GO:0001046 "core promoter
            sequence-specific DNA binding" evidence=IDA] [GO:0007165 "signal
            transduction" evidence=ISS] [GO:0072034 "renal vesicle induction"
            evidence=ISS] [GO:0090184 "positive regulation of kidney
            development" evidence=ISS] [GO:0090190 "positive regulation of
            branching involved in ureteric bud morphogenesis" evidence=ISS]
            [GO:0035326 "enhancer binding" evidence=IDA] [GO:0019933
            "cAMP-mediated signaling" evidence=IDA] [GO:0045893 "positive
            regulation of transcription, DNA-dependent" evidence=IMP;IDA]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=IMP;IDA] [GO:0001501 "skeletal system
            development" evidence=IMP] [GO:0003413 "chondrocyte differentiation
            involved in endochondral bone morphogenesis" evidence=IMP]
            [GO:0071300 "cellular response to retinoic acid" evidence=IEP]
            [GO:0010564 "regulation of cell cycle process" evidence=IMP]
            [GO:0008284 "positive regulation of cell proliferation"
            evidence=IMP] [GO:0045892 "negative regulation of transcription,
            DNA-dependent" evidence=IMP] [GO:0043066 "negative regulation of
            apoptotic process" evidence=ISS;IMP] [GO:0003415 "chondrocyte
            hypertrophy" evidence=ISS] [GO:0014068 "positive regulation of
            phosphatidylinositol 3-kinase cascade" evidence=ISS] [GO:0004672
            "protein kinase activity" evidence=ISS] [GO:2000020 "positive
            regulation of male gonad development" evidence=IDA] [GO:0010634
            "positive regulation of epithelial cell migration" evidence=IMP]
            [GO:0001502 "cartilage condensation" evidence=ISS] [GO:0003179
            "heart valve morphogenesis" evidence=ISS] [GO:0030916 "otic vesicle
            formation" evidence=ISS] [GO:0051216 "cartilage development"
            evidence=ISS] [GO:0060729 "intestinal epithelial structure
            maintenance" evidence=ISS] [GO:0090103 "cochlea morphogenesis"
            evidence=ISS] [GO:0070168 "negative regulation of biomineral tissue
            development" evidence=ISS] [GO:0005730 "nucleolus" evidence=IDA]
            InterPro:IPR009071 Pfam:PF00505 GO:GO:0001708 GO:GO:0007173
            GO:GO:0045892 GO:GO:0043066 GO:GO:0006461 GO:GO:0030155
            GO:GO:0071560 GO:GO:0019933 GO:GO:0070371 GO:GO:0071300
            GO:GO:0030198 GO:GO:0014068 GO:GO:0007283 GO:GO:0003682
            GO:GO:0003705 GO:GO:0001077 GO:GO:0006338 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0004672
            GO:GO:0071504 GO:GO:0001942 EMBL:CH471099 GO:GO:0032332
            GO:GO:0030279 GO:GO:0060009 GO:GO:0090090 GO:GO:0071260
            GO:GO:0035019 GO:GO:0001934 GO:GO:0090190 GO:GO:0071364
            GO:GO:0031018 GO:GO:0043491 GO:GO:0014032 GO:GO:0001502
            GO:GO:0045732 GO:GO:0001837 GO:GO:0050680 GO:GO:0001503
            GO:GO:0001658 GO:GO:0071347 GO:GO:0001158 GO:GO:0030858
            GO:GO:0048709 GO:GO:0010634 GO:GO:0016585 GO:GO:0006334
            GO:GO:0003413 GO:GO:0030879 GO:GO:0050679 GO:GO:0002053
            GO:GO:0001046 GO:GO:0030502 GO:GO:2000138 GO:GO:0061036
            GO:GO:0003203 GO:GO:0032331 GO:GO:0045662 GO:GO:0060008
            GO:GO:0030916 GO:GO:2000020 GO:GO:0046533 GO:GO:0060174
            GO:GO:0030903 GO:GO:0090103 GO:GO:0010564 GO:GO:0019100
            GO:GO:0003179 GO:GO:0070168 GO:GO:0060018 GO:GO:0035622
            GO:GO:0072190 GO:GO:0072289 GO:GO:0072197 GO:GO:0003188
            eggNOG:NOG295709 HOGENOM:HOG000108876 HOVERGEN:HBG002061 KO:K09270
            InterPro:IPR022151 Pfam:PF12444 GO:GO:2000741 GO:GO:0072034
            GO:GO:0060221 OrthoDB:EOG4TXBRZ GO:GO:0003415 GO:GO:0060517
            GO:GO:0060729 GO:GO:0002683 GO:GO:0060784 CTD:6662 EMBL:Z46629
            EMBL:S74506 EMBL:S74504 EMBL:S74505 EMBL:BT006875 EMBL:BC007951
            EMBL:BC056420 IPI:IPI00009713 PIR:A55204 RefSeq:NP_000337.1
            UniGene:Hs.647409 PDB:1S9M PDB:1SX9 PDB:4EUW PDBsum:1S9M
            PDBsum:1SX9 PDBsum:4EUW ProteinModelPortal:P48436 SMR:P48436
            IntAct:P48436 STRING:P48436 PhosphoSite:P48436 DMDM:1351096
            PRIDE:P48436 DNASU:6662 Ensembl:ENST00000245479 GeneID:6662
            KEGG:hsa:6662 UCSC:uc002jiw.3 GeneCards:GC17P070117 HGNC:HGNC:11204
            HPA:CAB022456 HPA:HPA001758 MIM:114290 MIM:278850 MIM:608160
            neXtProt:NX_P48436 Orphanet:140 Orphanet:2138 PharmGKB:PA36041
            InParanoid:P48436 OMA:GAGHVWM PhylomeDB:P48436 GenomeRNAi:6662
            NextBio:25973 ArrayExpress:P48436 Bgee:P48436 CleanEx:HS_SOX9
            Genevestigator:P48436 GermOnline:ENSG00000125398 Uniprot:P48436
        Length = 509

 Score = 102 (41.0 bits), Expect = 0.00013, P = 0.00013
 Identities = 21/76 (27%), Positives = 44/76 (57%)

Query:    40 NAP--KRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             N P  KRP++A+ ++ +  R+   + +P   + A + K  G+ W+ ++E+EK P+V++A 
Sbjct:   101 NKPHVKRPMNAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLNESEKRPFVEEAE 159

Query:    98 NKKAEYELALEAYKKQ 113
               + +++     YK Q
Sbjct:   160 RLRVQHKKDHPDYKYQ 175


>UNIPROTKB|O18896 [details] [associations]
            symbol:SOX9 "Transcription factor SOX-9" species:9823 "Sus
            scrofa" [GO:0006468 "protein phosphorylation" evidence=ISS]
            [GO:0061036 "positive regulation of cartilage development"
            evidence=ISS] [GO:0002683 "negative regulation of immune system
            process" evidence=ISS] [GO:0060729 "intestinal epithelial structure
            maintenance" evidence=ISS] [GO:0014068 "positive regulation of
            phosphatidylinositol 3-kinase cascade" evidence=ISS] [GO:0043066
            "negative regulation of apoptotic process" evidence=ISS]
            [GO:0030916 "otic vesicle formation" evidence=ISS] [GO:0001708
            "cell fate specification" evidence=ISS] [GO:2000741 "positive
            regulation of mesenchymal stem cell differentiation" evidence=ISS]
            [GO:2000020 "positive regulation of male gonad development"
            evidence=ISS] [GO:0071560 "cellular response to transforming growth
            factor beta stimulus" evidence=ISS] [GO:0003682 "chromatin binding"
            evidence=ISS] [GO:0010564 "regulation of cell cycle process"
            evidence=ISS] [GO:0008284 "positive regulation of cell
            proliferation" evidence=ISS] [GO:0006338 "chromatin remodeling"
            evidence=ISS] [GO:0006334 "nucleosome assembly" evidence=ISS]
            [GO:0071504 "cellular response to heparin" evidence=ISS]
            [GO:0071364 "cellular response to epidermal growth factor stimulus"
            evidence=ISS] [GO:0071260 "cellular response to mechanical
            stimulus" evidence=ISS] [GO:0001934 "positive regulation of protein
            phosphorylation" evidence=ISS] [GO:0070371 "ERK1 and ERK2 cascade"
            evidence=ISS] [GO:0043491 "protein kinase B signaling cascade"
            evidence=ISS] [GO:0007173 "epidermal growth factor receptor
            signaling pathway" evidence=ISS] [GO:0010634 "positive regulation
            of epithelial cell migration" evidence=ISS] [GO:0070168 "negative
            regulation of biomineral tissue development" evidence=ISS]
            [GO:0030279 "negative regulation of ossification" evidence=ISS]
            [GO:0003170 "heart valve development" evidence=ISS] [GO:0001894
            "tissue homeostasis" evidence=ISS] [GO:0001158 "enhancer
            sequence-specific DNA binding" evidence=ISS] [GO:0003705 "RNA
            polymerase II distal enhancer sequence-specific DNA binding
            transcription factor activity" evidence=ISS] [GO:0061138
            "morphogenesis of a branching epithelium" evidence=ISS] [GO:0060784
            "regulation of cell proliferation involved in tissue homeostasis"
            evidence=ISS] [GO:0060517 "epithelial cell proliferation involved
            in prostatic bud elongation" evidence=ISS] [GO:0060221 "retinal rod
            cell differentiation" evidence=ISS] [GO:0060008 "Sertoli cell
            differentiation" evidence=ISS] [GO:0060041 "retina development in
            camera-type eye" evidence=ISS] [GO:0072289 "metanephric nephron
            tubule formation" evidence=ISS] [GO:0090090 "negative regulation of
            canonical Wnt receptor signaling pathway" evidence=ISS] [GO:0090103
            "cochlea morphogenesis" evidence=ISS] [GO:0051216 "cartilage
            development" evidence=ISS] [GO:0004672 "protein kinase activity"
            evidence=ISS] [GO:0003415 "chondrocyte hypertrophy" evidence=ISS]
            [GO:0050680 "negative regulation of epithelial cell proliferation"
            evidence=ISS] [GO:0050679 "positive regulation of epithelial cell
            proliferation" evidence=ISS] [GO:0046533 "negative regulation of
            photoreceptor cell differentiation" evidence=ISS] [GO:0045662
            "negative regulation of myoblast differentiation" evidence=ISS]
            [GO:0042981 "regulation of apoptotic process" evidence=ISS]
            [GO:0042127 "regulation of cell proliferation" evidence=ISS]
            [GO:0035019 "somatic stem cell maintenance" evidence=ISS]
            [GO:0032331 "negative regulation of chondrocyte differentiation"
            evidence=ISS] [GO:0030858 "positive regulation of epithelial cell
            differentiation" evidence=ISS] [GO:0019100 "male germ-line sex
            determination" evidence=ISS] [GO:0007283 "spermatogenesis"
            evidence=ISS] [GO:0003203 "endocardial cushion morphogenesis"
            evidence=ISS] [GO:0003179 "heart valve morphogenesis" evidence=ISS]
            [GO:0002053 "positive regulation of mesenchymal cell proliferation"
            evidence=ISS] [GO:0001837 "epithelial to mesenchymal transition"
            evidence=ISS] [GO:0001942 "hair follicle development" evidence=ISS]
            [GO:0043234 "protein complex" evidence=ISS] [GO:0035326 "enhancer
            binding" evidence=ISS] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=ISS] [GO:0001046 "core
            promoter sequence-specific DNA binding" evidence=ISS] [GO:0032332
            "positive regulation of chondrocyte differentiation" evidence=ISS]
            [GO:0001502 "cartilage condensation" evidence=ISS] [GO:0019933
            "cAMP-mediated signaling" evidence=ISS] [GO:0008584 "male gonad
            development" evidence=ISS] [GO:0006461 "protein complex assembly"
            evidence=ISS] [GO:0003413 "chondrocyte differentiation involved in
            endochondral bone morphogenesis" evidence=ISS] [GO:0001501
            "skeletal system development" evidence=ISS] [GO:0001077 "RNA
            polymerase II core promoter proximal region sequence-specific DNA
            binding transcription factor activity involved in positive
            regulation of transcription" evidence=IMP] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=IMP] [GO:0005634 "nucleus" evidence=ISS] [GO:0090190
            "positive regulation of branching involved in ureteric bud
            morphogenesis" evidence=ISS] [GO:0090184 "positive regulation of
            kidney development" evidence=ISS] [GO:0072034 "renal vesicle
            induction" evidence=ISS] [GO:0045892 "negative regulation of
            transcription, DNA-dependent" evidence=ISS] [GO:0007165 "signal
            transduction" evidence=ISS] InterPro:IPR009071 Pfam:PF00505
            GO:GO:0001708 GO:GO:0007173 GO:GO:0045892 GO:GO:0043066
            GO:GO:0006461 GO:GO:0071560 GO:GO:0019933 GO:GO:0070371
            GO:GO:0014068 GO:GO:0007283 GO:GO:0003682 GO:GO:0003705
            GO:GO:0001077 GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0004672 GO:GO:0071504
            GO:GO:0001942 GO:GO:0032332 GO:GO:0030279 GO:GO:0090090
            GO:GO:0071260 GO:GO:0035019 GO:GO:0001934 GO:GO:0090190
            GO:GO:0071364 GO:GO:0043491 GO:GO:0001502 GO:GO:0001837
            GO:GO:0050680 GO:GO:0001158 GO:GO:0030858 GO:GO:0010634
            GO:GO:0016585 GO:GO:0006334 GO:GO:0003413 GO:GO:0050679
            GO:GO:0002053 GO:GO:0001046 GO:GO:0061036 GO:GO:0003203
            GO:GO:0032331 GO:GO:0045662 GO:GO:0060008 GO:GO:0030916
            GO:GO:2000020 GO:GO:0046533 GO:GO:0090103 GO:GO:0010564
            GO:GO:0019100 GO:GO:0003179 GO:GO:0070168 GO:GO:0072289
            eggNOG:NOG295709 HOGENOM:HOG000108876 HOVERGEN:HBG002061 KO:K09270
            InterPro:IPR022151 Pfam:PF12444 GO:GO:2000741 GO:GO:0072034
            GO:GO:0060221 OrthoDB:EOG4TXBRZ GO:GO:0003415 GO:GO:0060517
            GO:GO:0060729 GO:GO:0002683 GO:GO:0060784 CTD:6662 EMBL:AF029696
            RefSeq:NP_999008.1 UniGene:Ssc.16373 ProteinModelPortal:O18896
            SMR:O18896 STRING:O18896 GeneID:396840 KEGG:ssc:396840
            Uniprot:O18896
        Length = 509

 Score = 102 (41.0 bits), Expect = 0.00013, P = 0.00013
 Identities = 21/76 (27%), Positives = 44/76 (57%)

Query:    40 NAP--KRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             N P  KRP++A+ ++ +  R+   + +P   + A + K  G+ W+ ++E+EK P+V++A 
Sbjct:   101 NKPHVKRPMNAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLNESEKRPFVEEAE 159

Query:    98 NKKAEYELALEAYKKQ 113
               + +++     YK Q
Sbjct:   160 RLRVQHKKDHPDYKYQ 175


>UNIPROTKB|P61753 [details] [associations]
            symbol:SOX9 "Transcription factor SOX-9" species:9544
            "Macaca mulatta" [GO:0001046 "core promoter sequence-specific DNA
            binding" evidence=ISS] [GO:0001077 "RNA polymerase II core promoter
            proximal region sequence-specific DNA binding transcription factor
            activity involved in positive regulation of transcription"
            evidence=ISS] [GO:0001158 "enhancer sequence-specific DNA binding"
            evidence=ISS] [GO:0001501 "skeletal system development"
            evidence=ISS] [GO:0001502 "cartilage condensation" evidence=ISS]
            [GO:0001708 "cell fate specification" evidence=ISS] [GO:0001837
            "epithelial to mesenchymal transition" evidence=ISS] [GO:0001894
            "tissue homeostasis" evidence=ISS] [GO:0001934 "positive regulation
            of protein phosphorylation" evidence=ISS] [GO:0001942 "hair
            follicle development" evidence=ISS] [GO:0002053 "positive
            regulation of mesenchymal cell proliferation" evidence=ISS]
            [GO:0002683 "negative regulation of immune system process"
            evidence=ISS] [GO:0003170 "heart valve development" evidence=ISS]
            [GO:0003179 "heart valve morphogenesis" evidence=ISS] [GO:0003203
            "endocardial cushion morphogenesis" evidence=ISS] [GO:0003413
            "chondrocyte differentiation involved in endochondral bone
            morphogenesis" evidence=ISS] [GO:0003415 "chondrocyte hypertrophy"
            evidence=ISS] [GO:0003682 "chromatin binding" evidence=ISS]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=ISS] [GO:0003705 "RNA polymerase II distal
            enhancer sequence-specific DNA binding transcription factor
            activity" evidence=ISS] [GO:0004672 "protein kinase activity"
            evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0006334
            "nucleosome assembly" evidence=ISS] [GO:0006338 "chromatin
            remodeling" evidence=ISS] [GO:0006461 "protein complex assembly"
            evidence=ISS] [GO:0006468 "protein phosphorylation" evidence=ISS]
            [GO:0007165 "signal transduction" evidence=ISS] [GO:0007173
            "epidermal growth factor receptor signaling pathway" evidence=ISS]
            [GO:0007283 "spermatogenesis" evidence=ISS] [GO:0008284 "positive
            regulation of cell proliferation" evidence=ISS] [GO:0008584 "male
            gonad development" evidence=ISS] [GO:0010564 "regulation of cell
            cycle process" evidence=ISS] [GO:0010634 "positive regulation of
            epithelial cell migration" evidence=ISS] [GO:0014068 "positive
            regulation of phosphatidylinositol 3-kinase cascade" evidence=ISS]
            [GO:0019100 "male germ-line sex determination" evidence=ISS]
            [GO:0019933 "cAMP-mediated signaling" evidence=ISS] [GO:0030279
            "negative regulation of ossification" evidence=ISS] [GO:0030858
            "positive regulation of epithelial cell differentiation"
            evidence=ISS] [GO:0030916 "otic vesicle formation" evidence=ISS]
            [GO:0032331 "negative regulation of chondrocyte differentiation"
            evidence=ISS] [GO:0032332 "positive regulation of chondrocyte
            differentiation" evidence=ISS] [GO:0035019 "somatic stem cell
            maintenance" evidence=ISS] [GO:0035326 "enhancer binding"
            evidence=ISS] [GO:0042127 "regulation of cell proliferation"
            evidence=ISS] [GO:0042981 "regulation of apoptotic process"
            evidence=ISS] [GO:0043066 "negative regulation of apoptotic
            process" evidence=ISS] [GO:0043234 "protein complex" evidence=ISS]
            [GO:0043491 "protein kinase B signaling cascade" evidence=ISS]
            [GO:0045662 "negative regulation of myoblast differentiation"
            evidence=ISS] [GO:0045892 "negative regulation of transcription,
            DNA-dependent" evidence=ISS] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=ISS]
            [GO:0046533 "negative regulation of photoreceptor cell
            differentiation" evidence=ISS] [GO:0050679 "positive regulation of
            epithelial cell proliferation" evidence=ISS] [GO:0050680 "negative
            regulation of epithelial cell proliferation" evidence=ISS]
            [GO:0051216 "cartilage development" evidence=ISS] [GO:0060008
            "Sertoli cell differentiation" evidence=ISS] [GO:0060041 "retina
            development in camera-type eye" evidence=ISS] [GO:0060221 "retinal
            rod cell differentiation" evidence=ISS] [GO:0060517 "epithelial
            cell proliferation involved in prostatic bud elongation"
            evidence=ISS] [GO:0060729 "intestinal epithelial structure
            maintenance" evidence=ISS] [GO:0060784 "regulation of cell
            proliferation involved in tissue homeostasis" evidence=ISS]
            [GO:0061036 "positive regulation of cartilage development"
            evidence=ISS] [GO:0061138 "morphogenesis of a branching epithelium"
            evidence=ISS] [GO:0070168 "negative regulation of biomineral tissue
            development" evidence=ISS] [GO:0070371 "ERK1 and ERK2 cascade"
            evidence=ISS] [GO:0071260 "cellular response to mechanical
            stimulus" evidence=ISS] [GO:0071364 "cellular response to epidermal
            growth factor stimulus" evidence=ISS] [GO:0071504 "cellular
            response to heparin" evidence=ISS] [GO:0071560 "cellular response
            to transforming growth factor beta stimulus" evidence=ISS]
            [GO:0072034 "renal vesicle induction" evidence=ISS] [GO:0072289
            "metanephric nephron tubule formation" evidence=ISS] [GO:0090090
            "negative regulation of canonical Wnt receptor signaling pathway"
            evidence=ISS] [GO:0090103 "cochlea morphogenesis" evidence=ISS]
            [GO:0090184 "positive regulation of kidney development"
            evidence=ISS] [GO:0090190 "positive regulation of branching
            involved in ureteric bud morphogenesis" evidence=ISS] [GO:2000020
            "positive regulation of male gonad development" evidence=ISS]
            [GO:2000741 "positive regulation of mesenchymal stem cell
            differentiation" evidence=ISS] InterPro:IPR009071 Pfam:PF00505
            GO:GO:0001708 GO:GO:0007173 GO:GO:0045892 GO:GO:0043066
            GO:GO:0006461 GO:GO:0071560 GO:GO:0019933 GO:GO:0070371
            GO:GO:0014068 GO:GO:0007283 GO:GO:0003682 GO:GO:0003705
            GO:GO:0001077 GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0004672 GO:GO:0071504
            GO:GO:0001942 GO:GO:0032332 GO:GO:0030279 GO:GO:0090090
            GO:GO:0071260 GO:GO:0035019 GO:GO:0001934 GO:GO:0090190
            GO:GO:0071364 GO:GO:0043491 GO:GO:0001502 GO:GO:0001837
            GO:GO:0050680 GO:GO:0001158 GO:GO:0030858 GO:GO:0010634
            GO:GO:0016585 GO:GO:0006334 GO:GO:0003413 GO:GO:0050679
            GO:GO:0002053 GO:GO:0001046 GO:GO:0061036 GO:GO:0003203
            GO:GO:0032331 GO:GO:0045662 GO:GO:0060008 GO:GO:0030916
            GO:GO:2000020 GO:GO:0046533 GO:GO:0090103 GO:GO:0010564
            GO:GO:0019100 GO:GO:0003179 GO:GO:0070168 GO:GO:0072289
            eggNOG:NOG295709 HOGENOM:HOG000108876 HOVERGEN:HBG002061 KO:K09270
            InterPro:IPR022151 Pfam:PF12444 GO:GO:2000741 GO:GO:0072034
            GO:GO:0060221 OrthoDB:EOG4TXBRZ GO:GO:0003415 GO:GO:0060517
            GO:GO:0060729 GO:GO:0002683 GO:GO:0060784 CTD:6662 EMBL:AF322900
            RefSeq:NP_001028040.1 UniGene:Mmu.3543 ProteinModelPortal:P61753
            SMR:P61753 STRING:P61753 PRIDE:P61753 GeneID:574208 KEGG:mcc:574208
            InParanoid:P61753 NextBio:19987290 Uniprot:P61753
        Length = 509

 Score = 102 (41.0 bits), Expect = 0.00013, P = 0.00013
 Identities = 21/76 (27%), Positives = 44/76 (57%)

Query:    40 NAP--KRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             N P  KRP++A+ ++ +  R+   + +P   + A + K  G+ W+ ++E+EK P+V++A 
Sbjct:   101 NKPHVKRPMNAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLNESEKRPFVEEAE 159

Query:    98 NKKAEYELALEAYKKQ 113
               + +++     YK Q
Sbjct:   160 RLRVQHKKDHPDYKYQ 175


>UNIPROTKB|P61754 [details] [associations]
            symbol:SOX9 "Transcription factor SOX-9" species:9600
            "Pongo pygmaeus" [GO:0001046 "core promoter sequence-specific DNA
            binding" evidence=ISS] [GO:0001077 "RNA polymerase II core promoter
            proximal region sequence-specific DNA binding transcription factor
            activity involved in positive regulation of transcription"
            evidence=ISS] [GO:0001158 "enhancer sequence-specific DNA binding"
            evidence=ISS] [GO:0001501 "skeletal system development"
            evidence=ISS] [GO:0001502 "cartilage condensation" evidence=ISS]
            [GO:0001708 "cell fate specification" evidence=ISS] [GO:0001837
            "epithelial to mesenchymal transition" evidence=ISS] [GO:0001894
            "tissue homeostasis" evidence=ISS] [GO:0001934 "positive regulation
            of protein phosphorylation" evidence=ISS] [GO:0001942 "hair
            follicle development" evidence=ISS] [GO:0002053 "positive
            regulation of mesenchymal cell proliferation" evidence=ISS]
            [GO:0002683 "negative regulation of immune system process"
            evidence=ISS] [GO:0003170 "heart valve development" evidence=ISS]
            [GO:0003179 "heart valve morphogenesis" evidence=ISS] [GO:0003203
            "endocardial cushion morphogenesis" evidence=ISS] [GO:0003413
            "chondrocyte differentiation involved in endochondral bone
            morphogenesis" evidence=ISS] [GO:0003415 "chondrocyte hypertrophy"
            evidence=ISS] [GO:0003682 "chromatin binding" evidence=ISS]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=ISS] [GO:0003705 "RNA polymerase II distal
            enhancer sequence-specific DNA binding transcription factor
            activity" evidence=ISS] [GO:0004672 "protein kinase activity"
            evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0006334
            "nucleosome assembly" evidence=ISS] [GO:0006338 "chromatin
            remodeling" evidence=ISS] [GO:0006461 "protein complex assembly"
            evidence=ISS] [GO:0006468 "protein phosphorylation" evidence=ISS]
            [GO:0007165 "signal transduction" evidence=ISS] [GO:0007173
            "epidermal growth factor receptor signaling pathway" evidence=ISS]
            [GO:0007283 "spermatogenesis" evidence=ISS] [GO:0008284 "positive
            regulation of cell proliferation" evidence=ISS] [GO:0008584 "male
            gonad development" evidence=ISS] [GO:0010564 "regulation of cell
            cycle process" evidence=ISS] [GO:0010634 "positive regulation of
            epithelial cell migration" evidence=ISS] [GO:0014068 "positive
            regulation of phosphatidylinositol 3-kinase cascade" evidence=ISS]
            [GO:0019100 "male germ-line sex determination" evidence=ISS]
            [GO:0019933 "cAMP-mediated signaling" evidence=ISS] [GO:0030279
            "negative regulation of ossification" evidence=ISS] [GO:0030858
            "positive regulation of epithelial cell differentiation"
            evidence=ISS] [GO:0030916 "otic vesicle formation" evidence=ISS]
            [GO:0032331 "negative regulation of chondrocyte differentiation"
            evidence=ISS] [GO:0032332 "positive regulation of chondrocyte
            differentiation" evidence=ISS] [GO:0035019 "somatic stem cell
            maintenance" evidence=ISS] [GO:0035326 "enhancer binding"
            evidence=ISS] [GO:0042127 "regulation of cell proliferation"
            evidence=ISS] [GO:0042981 "regulation of apoptotic process"
            evidence=ISS] [GO:0043066 "negative regulation of apoptotic
            process" evidence=ISS] [GO:0043234 "protein complex" evidence=ISS]
            [GO:0043491 "protein kinase B signaling cascade" evidence=ISS]
            [GO:0045662 "negative regulation of myoblast differentiation"
            evidence=ISS] [GO:0045892 "negative regulation of transcription,
            DNA-dependent" evidence=ISS] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=ISS]
            [GO:0046533 "negative regulation of photoreceptor cell
            differentiation" evidence=ISS] [GO:0050679 "positive regulation of
            epithelial cell proliferation" evidence=ISS] [GO:0050680 "negative
            regulation of epithelial cell proliferation" evidence=ISS]
            [GO:0051216 "cartilage development" evidence=ISS] [GO:0060008
            "Sertoli cell differentiation" evidence=ISS] [GO:0060041 "retina
            development in camera-type eye" evidence=ISS] [GO:0060221 "retinal
            rod cell differentiation" evidence=ISS] [GO:0060517 "epithelial
            cell proliferation involved in prostatic bud elongation"
            evidence=ISS] [GO:0060729 "intestinal epithelial structure
            maintenance" evidence=ISS] [GO:0060784 "regulation of cell
            proliferation involved in tissue homeostasis" evidence=ISS]
            [GO:0061036 "positive regulation of cartilage development"
            evidence=ISS] [GO:0061138 "morphogenesis of a branching epithelium"
            evidence=ISS] [GO:0070168 "negative regulation of biomineral tissue
            development" evidence=ISS] [GO:0070371 "ERK1 and ERK2 cascade"
            evidence=ISS] [GO:0071260 "cellular response to mechanical
            stimulus" evidence=ISS] [GO:0071364 "cellular response to epidermal
            growth factor stimulus" evidence=ISS] [GO:0071504 "cellular
            response to heparin" evidence=ISS] [GO:0071560 "cellular response
            to transforming growth factor beta stimulus" evidence=ISS]
            [GO:0072034 "renal vesicle induction" evidence=ISS] [GO:0072289
            "metanephric nephron tubule formation" evidence=ISS] [GO:0090090
            "negative regulation of canonical Wnt receptor signaling pathway"
            evidence=ISS] [GO:0090103 "cochlea morphogenesis" evidence=ISS]
            [GO:0090184 "positive regulation of kidney development"
            evidence=ISS] [GO:0090190 "positive regulation of branching
            involved in ureteric bud morphogenesis" evidence=ISS] [GO:2000020
            "positive regulation of male gonad development" evidence=ISS]
            [GO:2000741 "positive regulation of mesenchymal stem cell
            differentiation" evidence=ISS] InterPro:IPR009071 Pfam:PF00505
            GO:GO:0001708 GO:GO:0007173 GO:GO:0045892 GO:GO:0043066
            GO:GO:0006461 GO:GO:0071560 GO:GO:0019933 GO:GO:0070371
            GO:GO:0014068 GO:GO:0007283 GO:GO:0003682 GO:GO:0003705
            GO:GO:0001077 GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0004672 GO:GO:0071504
            GO:GO:0001942 GO:GO:0032332 GO:GO:0030279 GO:GO:0090090
            GO:GO:0071260 GO:GO:0035019 GO:GO:0001934 GO:GO:0090190
            GO:GO:0071364 GO:GO:0043491 GO:GO:0001502 GO:GO:0001837
            GO:GO:0050680 GO:GO:0001158 GO:GO:0030858 GO:GO:0010634
            GO:GO:0016585 GO:GO:0006334 GO:GO:0003413 GO:GO:0050679
            GO:GO:0002053 GO:GO:0001046 GO:GO:0061036 GO:GO:0003203
            GO:GO:0032331 GO:GO:0045662 GO:GO:0060008 GO:GO:0030916
            GO:GO:2000020 GO:GO:0046533 GO:GO:0090103 GO:GO:0010564
            GO:GO:0019100 GO:GO:0003179 GO:GO:0070168 GO:GO:0072289
            eggNOG:NOG295709 HOGENOM:HOG000108876 HOVERGEN:HBG002061
            InterPro:IPR022151 Pfam:PF12444 GO:GO:2000741 GO:GO:0072034
            GO:GO:0060221 GO:GO:0003415 GO:GO:0060517 GO:GO:0060729
            GO:GO:0002683 GO:GO:0060784 EMBL:AF322898 ProteinModelPortal:P61754
            SMR:P61754 STRING:P61754 PRIDE:P61754 InParanoid:P61754
            Uniprot:P61754
        Length = 509

 Score = 102 (41.0 bits), Expect = 0.00013, P = 0.00013
 Identities = 21/76 (27%), Positives = 44/76 (57%)

Query:    40 NAP--KRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             N P  KRP++A+ ++ +  R+   + +P   + A + K  G+ W+ ++E+EK P+V++A 
Sbjct:   101 NKPHVKRPMNAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLNESEKRPFVEEAE 159

Query:    98 NKKAEYELALEAYKKQ 113
               + +++     YK Q
Sbjct:   160 RLRVQHKKDHPDYKYQ 175


>UNIPROTKB|Q9BG91 [details] [associations]
            symbol:SOX9 "Transcription factor SOX-9" species:9483
            "Callithrix jacchus" [GO:0001046 "core promoter sequence-specific
            DNA binding" evidence=ISS] [GO:0001077 "RNA polymerase II core
            promoter proximal region sequence-specific DNA binding
            transcription factor activity involved in positive regulation of
            transcription" evidence=ISS] [GO:0001158 "enhancer
            sequence-specific DNA binding" evidence=ISS] [GO:0001501 "skeletal
            system development" evidence=ISS] [GO:0001502 "cartilage
            condensation" evidence=ISS] [GO:0001708 "cell fate specification"
            evidence=ISS] [GO:0001837 "epithelial to mesenchymal transition"
            evidence=ISS] [GO:0001894 "tissue homeostasis" evidence=ISS]
            [GO:0001934 "positive regulation of protein phosphorylation"
            evidence=ISS] [GO:0001942 "hair follicle development" evidence=ISS]
            [GO:0002053 "positive regulation of mesenchymal cell proliferation"
            evidence=ISS] [GO:0002683 "negative regulation of immune system
            process" evidence=ISS] [GO:0003170 "heart valve development"
            evidence=ISS] [GO:0003179 "heart valve morphogenesis" evidence=ISS]
            [GO:0003203 "endocardial cushion morphogenesis" evidence=ISS]
            [GO:0003413 "chondrocyte differentiation involved in endochondral
            bone morphogenesis" evidence=ISS] [GO:0003415 "chondrocyte
            hypertrophy" evidence=ISS] [GO:0003682 "chromatin binding"
            evidence=ISS] [GO:0003705 "RNA polymerase II distal enhancer
            sequence-specific DNA binding transcription factor activity"
            evidence=ISS] [GO:0004672 "protein kinase activity" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISS] [GO:0006334 "nucleosome
            assembly" evidence=ISS] [GO:0006338 "chromatin remodeling"
            evidence=ISS] [GO:0006461 "protein complex assembly" evidence=ISS]
            [GO:0006468 "protein phosphorylation" evidence=ISS] [GO:0007165
            "signal transduction" evidence=ISS] [GO:0007173 "epidermal growth
            factor receptor signaling pathway" evidence=ISS] [GO:0007283
            "spermatogenesis" evidence=ISS] [GO:0008284 "positive regulation of
            cell proliferation" evidence=ISS] [GO:0010564 "regulation of cell
            cycle process" evidence=ISS] [GO:0010634 "positive regulation of
            epithelial cell migration" evidence=ISS] [GO:0014068 "positive
            regulation of phosphatidylinositol 3-kinase cascade" evidence=ISS]
            [GO:0019100 "male germ-line sex determination" evidence=ISS]
            [GO:0019933 "cAMP-mediated signaling" evidence=ISS] [GO:0030279
            "negative regulation of ossification" evidence=ISS] [GO:0030858
            "positive regulation of epithelial cell differentiation"
            evidence=ISS] [GO:0030916 "otic vesicle formation" evidence=ISS]
            [GO:0032331 "negative regulation of chondrocyte differentiation"
            evidence=ISS] [GO:0032332 "positive regulation of chondrocyte
            differentiation" evidence=ISS] [GO:0035019 "somatic stem cell
            maintenance" evidence=ISS] [GO:0035326 "enhancer binding"
            evidence=ISS] [GO:0042127 "regulation of cell proliferation"
            evidence=ISS] [GO:0042981 "regulation of apoptotic process"
            evidence=ISS] [GO:0043066 "negative regulation of apoptotic
            process" evidence=ISS] [GO:0043234 "protein complex" evidence=ISS]
            [GO:0043491 "protein kinase B signaling cascade" evidence=ISS]
            [GO:0045662 "negative regulation of myoblast differentiation"
            evidence=ISS] [GO:0045892 "negative regulation of transcription,
            DNA-dependent" evidence=ISS] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=ISS]
            [GO:0046533 "negative regulation of photoreceptor cell
            differentiation" evidence=ISS] [GO:0050679 "positive regulation of
            epithelial cell proliferation" evidence=ISS] [GO:0050680 "negative
            regulation of epithelial cell proliferation" evidence=ISS]
            [GO:0051216 "cartilage development" evidence=ISS] [GO:0060008
            "Sertoli cell differentiation" evidence=ISS] [GO:0060041 "retina
            development in camera-type eye" evidence=ISS] [GO:0060221 "retinal
            rod cell differentiation" evidence=ISS] [GO:0060517 "epithelial
            cell proliferation involved in prostatic bud elongation"
            evidence=ISS] [GO:0060729 "intestinal epithelial structure
            maintenance" evidence=ISS] [GO:0060784 "regulation of cell
            proliferation involved in tissue homeostasis" evidence=ISS]
            [GO:0061138 "morphogenesis of a branching epithelium" evidence=ISS]
            [GO:0070168 "negative regulation of biomineral tissue development"
            evidence=ISS] [GO:0070371 "ERK1 and ERK2 cascade" evidence=ISS]
            [GO:0071260 "cellular response to mechanical stimulus"
            evidence=ISS] [GO:0071364 "cellular response to epidermal growth
            factor stimulus" evidence=ISS] [GO:0071504 "cellular response to
            heparin" evidence=ISS] [GO:0072034 "renal vesicle induction"
            evidence=ISS] [GO:0072289 "metanephric nephron tubule formation"
            evidence=ISS] [GO:0090090 "negative regulation of canonical Wnt
            receptor signaling pathway" evidence=ISS] [GO:0090103 "cochlea
            morphogenesis" evidence=ISS] [GO:0090184 "positive regulation of
            kidney development" evidence=ISS] [GO:0090190 "positive regulation
            of branching involved in ureteric bud morphogenesis" evidence=ISS]
            [GO:2000020 "positive regulation of male gonad development"
            evidence=ISS] [GO:2000741 "positive regulation of mesenchymal stem
            cell differentiation" evidence=ISS] InterPro:IPR009071 Pfam:PF00505
            GO:GO:0001708 GO:GO:0007173 GO:GO:0045892 GO:GO:0043066
            GO:GO:0006461 GO:GO:0019933 GO:GO:0070371 GO:GO:0014068
            GO:GO:0007283 GO:GO:0003682 GO:GO:0003705 GO:GO:0001077
            GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0004672 GO:GO:0071504 GO:GO:0001942
            GO:GO:0032332 GO:GO:0030279 GO:GO:0090090 GO:GO:0071260
            GO:GO:0035019 GO:GO:0001934 GO:GO:0090190 GO:GO:0071364
            GO:GO:0043491 GO:GO:0001502 GO:GO:0001837 GO:GO:0050680
            GO:GO:0001158 GO:GO:0030858 GO:GO:0010634 GO:GO:0016585
            GO:GO:0006334 GO:GO:0003413 GO:GO:0050679 GO:GO:0002053
            GO:GO:0001046 GO:GO:0003203 GO:GO:0032331 GO:GO:0045662
            GO:GO:0060008 GO:GO:0030916 GO:GO:2000020 GO:GO:0046533
            GO:GO:0090103 GO:GO:0010564 GO:GO:0019100 GO:GO:0003179
            GO:GO:0070168 GO:GO:0072289 HOVERGEN:HBG002061 InterPro:IPR022151
            Pfam:PF12444 GO:GO:2000741 GO:GO:0072034 GO:GO:0060221
            EMBL:AF322899 ProteinModelPortal:Q9BG91 SMR:Q9BG91
            OrthoDB:EOG4TXBRZ GO:GO:0003415 GO:GO:0060517 GO:GO:0060729
            GO:GO:0002683 GO:GO:0060784 Uniprot:Q9BG91
        Length = 509

 Score = 102 (41.0 bits), Expect = 0.00013, P = 0.00013
 Identities = 21/76 (27%), Positives = 44/76 (57%)

Query:    40 NAP--KRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             N P  KRP++A+ ++ +  R+   + +P   + A + K  G+ W+ ++E+EK P+V++A 
Sbjct:   101 NKPHVKRPMNAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLNESEKRPFVEEAE 159

Query:    98 NKKAEYELALEAYKKQ 113
               + +++     YK Q
Sbjct:   160 RLRVQHKKDHPDYKYQ 175


>UNIPROTKB|F1RV30 [details] [associations]
            symbol:SOX9 "Transcription factor SOX-9" species:9823 "Sus
            scrofa" [GO:0035622 "intrahepatic bile duct development"
            evidence=IEA] [GO:0035019 "somatic stem cell maintenance"
            evidence=IEA] [GO:0034236 "protein kinase A catalytic subunit
            binding" evidence=IEA] [GO:0032332 "positive regulation of
            chondrocyte differentiation" evidence=IEA] [GO:0032331 "negative
            regulation of chondrocyte differentiation" evidence=IEA]
            [GO:0031018 "endocrine pancreas development" evidence=IEA]
            [GO:0030916 "otic vesicle formation" evidence=IEA] [GO:0030903
            "notochord development" evidence=IEA] [GO:0030879 "mammary gland
            development" evidence=IEA] [GO:0030858 "positive regulation of
            epithelial cell differentiation" evidence=IEA] [GO:0030502
            "negative regulation of bone mineralization" evidence=IEA]
            [GO:0030198 "extracellular matrix organization" evidence=IEA]
            [GO:0030155 "regulation of cell adhesion" evidence=IEA] [GO:0019933
            "cAMP-mediated signaling" evidence=IEA] [GO:0019100 "male germ-line
            sex determination" evidence=IEA] [GO:0014068 "positive regulation
            of phosphatidylinositol 3-kinase cascade" evidence=IEA] [GO:0014032
            "neural crest cell development" evidence=IEA] [GO:0010634 "positive
            regulation of epithelial cell migration" evidence=IEA] [GO:0010564
            "regulation of cell cycle process" evidence=IEA] [GO:0008013
            "beta-catenin binding" evidence=IEA] [GO:0007283 "spermatogenesis"
            evidence=IEA] [GO:0007173 "epidermal growth factor receptor
            signaling pathway" evidence=IEA] [GO:0006461 "protein complex
            assembly" evidence=IEA] [GO:0006338 "chromatin remodeling"
            evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
            [GO:0005667 "transcription factor complex" evidence=IEA]
            [GO:0004672 "protein kinase activity" evidence=IEA] [GO:0003705
            "RNA polymerase II distal enhancer sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0003682 "chromatin
            binding" evidence=IEA] [GO:0003415 "chondrocyte hypertrophy"
            evidence=IEA] [GO:0003413 "chondrocyte differentiation involved in
            endochondral bone morphogenesis" evidence=IEA] [GO:0003203
            "endocardial cushion morphogenesis" evidence=IEA] [GO:0003188
            "heart valve formation" evidence=IEA] [GO:0002683 "negative
            regulation of immune system process" evidence=IEA] [GO:0002053
            "positive regulation of mesenchymal cell proliferation"
            evidence=IEA] [GO:0001942 "hair follicle development" evidence=IEA]
            [GO:0001934 "positive regulation of protein phosphorylation"
            evidence=IEA] [GO:0001837 "epithelial to mesenchymal transition"
            evidence=IEA] [GO:0001708 "cell fate specification" evidence=IEA]
            [GO:0001658 "branching involved in ureteric bud morphogenesis"
            evidence=IEA] [GO:0001503 "ossification" evidence=IEA] [GO:0001502
            "cartilage condensation" evidence=IEA] [GO:0001158 "enhancer
            sequence-specific DNA binding" evidence=IEA] [GO:0001077 "RNA
            polymerase II core promoter proximal region sequence-specific DNA
            binding transcription factor activity involved in positive
            regulation of transcription" evidence=IEA] [GO:0001046 "core
            promoter sequence-specific DNA binding" evidence=IEA] [GO:2000741
            "positive regulation of mesenchymal stem cell differentiation"
            evidence=IEA] [GO:2000138 "positive regulation of cell
            proliferation involved in heart morphogenesis" evidence=IEA]
            [GO:2000020 "positive regulation of male gonad development"
            evidence=IEA] [GO:0090190 "positive regulation of branching
            involved in ureteric bud morphogenesis" evidence=IEA] [GO:0090103
            "cochlea morphogenesis" evidence=IEA] [GO:0090090 "negative
            regulation of canonical Wnt receptor signaling pathway"
            evidence=IEA] [GO:0072289 "metanephric nephron tubule formation"
            evidence=IEA] [GO:0072197 "ureter morphogenesis" evidence=IEA]
            [GO:0072190 "ureter urothelium development" evidence=IEA]
            [GO:0072034 "renal vesicle induction" evidence=IEA] [GO:0071560
            "cellular response to transforming growth factor beta stimulus"
            evidence=IEA] [GO:0071504 "cellular response to heparin"
            evidence=IEA] [GO:0071364 "cellular response to epidermal growth
            factor stimulus" evidence=IEA] [GO:0071347 "cellular response to
            interleukin-1" evidence=IEA] [GO:0071300 "cellular response to
            retinoic acid" evidence=IEA] [GO:0071260 "cellular response to
            mechanical stimulus" evidence=IEA] [GO:0070371 "ERK1 and ERK2
            cascade" evidence=IEA] [GO:0061036 "positive regulation of
            cartilage development" evidence=IEA] [GO:0060784 "regulation of
            cell proliferation involved in tissue homeostasis" evidence=IEA]
            [GO:0060729 "intestinal epithelial structure maintenance"
            evidence=IEA] [GO:0060517 "epithelial cell proliferation involved
            in prostatic bud elongation" evidence=IEA] [GO:0060221 "retinal rod
            cell differentiation" evidence=IEA] [GO:0060174 "limb bud
            formation" evidence=IEA] [GO:0060018 "astrocyte fate commitment"
            evidence=IEA] [GO:0060009 "Sertoli cell development" evidence=IEA]
            [GO:0050680 "negative regulation of epithelial cell proliferation"
            evidence=IEA] [GO:0050679 "positive regulation of epithelial cell
            proliferation" evidence=IEA] [GO:0048709 "oligodendrocyte
            differentiation" evidence=IEA] [GO:0046533 "negative regulation of
            photoreceptor cell differentiation" evidence=IEA] [GO:0045892
            "negative regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0045732 "positive regulation of protein catabolic process"
            evidence=IEA] [GO:0045662 "negative regulation of myoblast
            differentiation" evidence=IEA] [GO:0043491 "protein kinase B
            signaling cascade" evidence=IEA] [GO:0043066 "negative regulation
            of apoptotic process" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
            GO:GO:0001708 GO:GO:0007173 GO:GO:0045892 GO:GO:0043066
            GO:GO:0006461 GO:GO:0030155 GO:GO:0071560 GO:GO:0019933
            GO:GO:0070371 GO:GO:0071300 GO:GO:0030198 GO:GO:0014068
            GO:GO:0007283 GO:GO:0003682 GO:GO:0003705 GO:GO:0001077
            GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0004672 GO:GO:0071504 GO:GO:0001942
            GO:GO:0032332 GO:GO:0060009 GO:GO:0090090 GO:GO:0071260
            GO:GO:0035019 GO:GO:0001934 GO:GO:0090190 GO:GO:0071364
            GO:GO:0031018 GO:GO:0043491 GO:GO:0014032 GO:GO:0001502
            GO:GO:0045732 GO:GO:0001837 GO:GO:0050680 GO:GO:0001503
            GO:GO:0001658 GO:GO:0071347 GO:GO:0001158 GO:GO:0030858
            GO:GO:0048709 GO:GO:0010634 GO:GO:0016585 GO:GO:0006334
            GO:GO:0003413 GO:GO:0030879 GO:GO:0050679 GO:GO:0002053
            GO:GO:0001046 GO:GO:0030502 GO:GO:2000138 GO:GO:0061036
            GO:GO:0003203 GO:GO:0032331 GO:GO:0045662 GO:GO:0030916
            GO:GO:2000020 GO:GO:0046533 GO:GO:0060174 GO:GO:0030903
            GO:GO:0090103 GO:GO:0010564 GO:GO:0019100 GO:GO:0060018
            GO:GO:0035622 GO:GO:0072190 GO:GO:0072289 GO:GO:0072197
            GO:GO:0003188 GeneTree:ENSGT00670000097649 InterPro:IPR022151
            Pfam:PF12444 GO:GO:2000741 GO:GO:0072034 GO:GO:0060221
            GO:GO:0003415 GO:GO:0060517 GO:GO:0060729 GO:GO:0002683
            GO:GO:0060784 OMA:GAGHVWM EMBL:CU640384 Ensembl:ENSSSCT00000018780
            ArrayExpress:F1RV30 Uniprot:F1RV30
        Length = 511

 Score = 102 (41.0 bits), Expect = 0.00013, P = 0.00013
 Identities = 21/76 (27%), Positives = 44/76 (57%)

Query:    40 NAP--KRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             N P  KRP++A+ ++ +  R+   + +P   + A + K  G+ W+ ++E+EK P+V++A 
Sbjct:   101 NKPHVKRPMNAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLNESEKRPFVEEAE 159

Query:    98 NKKAEYELALEAYKKQ 113
               + +++     YK Q
Sbjct:   160 RLRVQHKKDHPDYKYQ 175


>UNIPROTKB|Q7YRJ7 [details] [associations]
            symbol:SOX9 "Transcription factor SOX-9" species:9615
            "Canis lupus familiaris" [GO:0006468 "protein phosphorylation"
            evidence=ISS] [GO:0010564 "regulation of cell cycle process"
            evidence=ISS] [GO:0007173 "epidermal growth factor receptor
            signaling pathway" evidence=ISS] [GO:0003170 "heart valve
            development" evidence=ISS] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=ISS]
            [GO:0060784 "regulation of cell proliferation involved in tissue
            homeostasis" evidence=ISS] [GO:0004672 "protein kinase activity"
            evidence=ISS] [GO:0045662 "negative regulation of myoblast
            differentiation" evidence=ISS] [GO:0032331 "negative regulation of
            chondrocyte differentiation" evidence=ISS] [GO:0007283
            "spermatogenesis" evidence=ISS] [GO:0002053 "positive regulation of
            mesenchymal cell proliferation" evidence=ISS] [GO:0003413
            "chondrocyte differentiation involved in endochondral bone
            morphogenesis" evidence=ISS] [GO:2000741 "positive regulation of
            mesenchymal stem cell differentiation" evidence=ISS] [GO:2000020
            "positive regulation of male gonad development" evidence=ISS]
            [GO:0003682 "chromatin binding" evidence=ISS] [GO:0006338
            "chromatin remodeling" evidence=ISS] [GO:0006334 "nucleosome
            assembly" evidence=ISS] [GO:0071504 "cellular response to heparin"
            evidence=ISS] [GO:0071364 "cellular response to epidermal growth
            factor stimulus" evidence=ISS] [GO:0071260 "cellular response to
            mechanical stimulus" evidence=ISS] [GO:0070371 "ERK1 and ERK2
            cascade" evidence=ISS] [GO:0001934 "positive regulation of protein
            phosphorylation" evidence=ISS] [GO:0043491 "protein kinase B
            signaling cascade" evidence=ISS] [GO:0010634 "positive regulation
            of epithelial cell migration" evidence=ISS] [GO:0070168 "negative
            regulation of biomineral tissue development" evidence=ISS]
            [GO:0030279 "negative regulation of ossification" evidence=ISS]
            [GO:0002683 "negative regulation of immune system process"
            evidence=ISS] [GO:0001894 "tissue homeostasis" evidence=ISS]
            [GO:0001158 "enhancer sequence-specific DNA binding" evidence=ISS]
            [GO:0003705 "RNA polymerase II distal enhancer sequence-specific
            DNA binding transcription factor activity" evidence=ISS]
            [GO:0061138 "morphogenesis of a branching epithelium" evidence=ISS]
            [GO:0060729 "intestinal epithelial structure maintenance"
            evidence=ISS] [GO:0060517 "epithelial cell proliferation involved
            in prostatic bud elongation" evidence=ISS] [GO:0060221 "retinal rod
            cell differentiation" evidence=ISS] [GO:0060008 "Sertoli cell
            differentiation" evidence=ISS] [GO:0060041 "retina development in
            camera-type eye" evidence=ISS] [GO:0072289 "metanephric nephron
            tubule formation" evidence=ISS] [GO:0090090 "negative regulation of
            canonical Wnt receptor signaling pathway" evidence=ISS] [GO:0090103
            "cochlea morphogenesis" evidence=ISS] [GO:0051216 "cartilage
            development" evidence=ISS] [GO:0014068 "positive regulation of
            phosphatidylinositol 3-kinase cascade" evidence=ISS] [GO:0003415
            "chondrocyte hypertrophy" evidence=ISS] [GO:0050680 "negative
            regulation of epithelial cell proliferation" evidence=ISS]
            [GO:0050679 "positive regulation of epithelial cell proliferation"
            evidence=ISS] [GO:0046533 "negative regulation of photoreceptor
            cell differentiation" evidence=ISS] [GO:0043066 "negative
            regulation of apoptotic process" evidence=ISS] [GO:0042981
            "regulation of apoptotic process" evidence=ISS] [GO:0042127
            "regulation of cell proliferation" evidence=ISS] [GO:0035019
            "somatic stem cell maintenance" evidence=ISS] [GO:0030916 "otic
            vesicle formation" evidence=ISS] [GO:0030858 "positive regulation
            of epithelial cell differentiation" evidence=ISS] [GO:0019100 "male
            germ-line sex determination" evidence=ISS] [GO:0008284 "positive
            regulation of cell proliferation" evidence=ISS] [GO:0003203
            "endocardial cushion morphogenesis" evidence=ISS] [GO:0003179
            "heart valve morphogenesis" evidence=ISS] [GO:0001708 "cell fate
            specification" evidence=ISS] [GO:0001837 "epithelial to mesenchymal
            transition" evidence=ISS] [GO:0001942 "hair follicle development"
            evidence=ISS] [GO:0001502 "cartilage condensation" evidence=ISS]
            [GO:0043234 "protein complex" evidence=ISS] [GO:0001046 "core
            promoter sequence-specific DNA binding" evidence=ISS] [GO:0032332
            "positive regulation of chondrocyte differentiation" evidence=ISS]
            [GO:0019933 "cAMP-mediated signaling" evidence=ISS] [GO:0006461
            "protein complex assembly" evidence=ISS] [GO:0001501 "skeletal
            system development" evidence=ISS] [GO:0035326 "enhancer binding"
            evidence=ISS] [GO:0001077 "RNA polymerase II core promoter proximal
            region sequence-specific DNA binding transcription factor activity
            involved in positive regulation of transcription" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISS] [GO:0090190 "positive
            regulation of branching involved in ureteric bud morphogenesis"
            evidence=ISS] [GO:0090184 "positive regulation of kidney
            development" evidence=ISS] [GO:0072034 "renal vesicle induction"
            evidence=ISS] [GO:0045892 "negative regulation of transcription,
            DNA-dependent" evidence=ISS] [GO:0007165 "signal transduction"
            evidence=ISS] InterPro:IPR009071 Pfam:PF00505 GO:GO:0001708
            GO:GO:0007173 GO:GO:0045892 GO:GO:0043066 GO:GO:0006461
            GO:GO:0019933 GO:GO:0070371 GO:GO:0014068 GO:GO:0007283
            GO:GO:0003682 GO:GO:0003705 GO:GO:0001077 GO:GO:0006338
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0004672 GO:GO:0071504 GO:GO:0001942 GO:GO:0032332
            GO:GO:0030279 GO:GO:0090090 GO:GO:0071260 GO:GO:0035019
            GO:GO:0001934 GO:GO:0090190 GO:GO:0071364 GO:GO:0043491
            GO:GO:0001502 GO:GO:0001837 GO:GO:0050680 GO:GO:0001158
            GO:GO:0030858 GO:GO:0010634 GO:GO:0016585 GO:GO:0006334
            GO:GO:0003413 GO:GO:0050679 GO:GO:0002053 GO:GO:0001046
            GO:GO:0003203 GO:GO:0032331 GO:GO:0045662 GO:GO:0060008
            GO:GO:0030916 GO:GO:2000020 GO:GO:0046533 GO:GO:0090103
            GO:GO:0010564 GO:GO:0019100 GO:GO:0003179 GO:GO:0070168
            GO:GO:0072289 eggNOG:NOG295709 HOGENOM:HOG000108876
            HOVERGEN:HBG002061 KO:K09270 InterPro:IPR022151 Pfam:PF12444
            GO:GO:2000741 GO:GO:0072034 GO:GO:0060221 OrthoDB:EOG4TXBRZ
            GO:GO:0003415 GO:GO:0060517 GO:GO:0060729 GO:GO:0002683
            GO:GO:0060784 EMBL:AY237827 RefSeq:NP_001002978.1 UniGene:Cfa.175
            ProteinModelPortal:Q7YRJ7 SMR:Q7YRJ7 STRING:Q7YRJ7 GeneID:403464
            KEGG:cfa:403464 CTD:6662 NextBio:20816981 Uniprot:Q7YRJ7
        Length = 513

 Score = 102 (41.0 bits), Expect = 0.00013, P = 0.00013
 Identities = 21/76 (27%), Positives = 44/76 (57%)

Query:    40 NAP--KRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             N P  KRP++A+ ++ +  R+   + +P   + A + K  G+ W+ ++E+EK P+V++A 
Sbjct:   101 NKPHVKRPMNAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLNESEKRPFVEEAE 159

Query:    98 NKKAEYELALEAYKKQ 113
               + +++     YK Q
Sbjct:   160 RLRVQHKKDHPDYKYQ 175


>ZFIN|ZDB-GENE-980526-466 [details] [associations]
            symbol:sox11b "SRY-box containing gene 11b"
            species:7955 "Danio rerio" [GO:0009611 "response to wounding"
            evidence=IMP] [GO:0030182 "neuron differentiation" evidence=IMP]
            InterPro:IPR009071 Pfam:PF00505 ZFIN:ZDB-GENE-980526-466
            GO:GO:0009611 GO:GO:0030182 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 HOVERGEN:HBG005040
            InterPro:IPR017386 PIRSF:PIRSF038098 HSSP:P48432 EMBL:U85091
            IPI:IPI00486894 UniGene:Dr.77148 ProteinModelPortal:Q9YH22
            SMR:Q9YH22 Uniprot:Q9YH22
        Length = 368

 Score = 100 (40.3 bits), Expect = 0.00013, P = 0.00013
 Identities = 19/69 (27%), Positives = 40/69 (57%)

Query:    43 KRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAE 102
             KRP++A+ ++ +  R+   E  PD  + A + K  G++WK + ++EK P++++A   + +
Sbjct:    47 KRPMNAFMVWSKIERRKIMEQSPDMHN-AEISKRLGKRWKMLKDSEKIPFIREAERLRLQ 105

Query:   103 YELALEAYK 111
             +      YK
Sbjct:   106 HMADYPDYK 114


>UNIPROTKB|P40650 [details] [associations]
            symbol:sox11-b "Transcription factor Sox-11-B" species:8355
            "Xenopus laevis" [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=IC] [GO:0007399 "nervous system
            development" evidence=IGI;IMP] [GO:0043565 "sequence-specific DNA
            binding" evidence=IDA] InterPro:IPR009071 Pfam:PF00505
            GO:GO:0005634 GO:GO:0007399 GO:GO:0030154 GO:GO:0006355
            GO:GO:0043565 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 HOVERGEN:HBG005040 KO:K09268
            InterPro:IPR017386 PIRSF:PIRSF038098 EMBL:D87209 EMBL:BC070707
            EMBL:X65656 PIR:S22948 RefSeq:NP_001084325.1 UniGene:Xl.78258
            ProteinModelPortal:P40650 SMR:P40650 GeneID:399440 KEGG:xla:399440
            CTD:399440 Xenbase:XB-GENE-483422 Uniprot:P40650
        Length = 374

 Score = 100 (40.3 bits), Expect = 0.00013, P = 0.00013
 Identities = 19/69 (27%), Positives = 41/69 (59%)

Query:    43 KRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAE 102
             KRP++A+ ++ +  R+   E  PD  + A + K  G++WK ++++EK P++++A   + +
Sbjct:    46 KRPMNAFMVWSKIERRKIMEQSPDMHN-AEISKRLGKRWKMLNDSEKIPFIREAERLRLK 104

Query:   103 YELALEAYK 111
             +      YK
Sbjct:   105 HMADYPDYK 113


>UNIPROTKB|Q91731 [details] [associations]
            symbol:sox11-a "Transcription factor Sox-11-A" species:8355
            "Xenopus laevis" [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=IC] [GO:0007399 "nervous system
            development" evidence=IGI;IMP] [GO:0043565 "sequence-specific DNA
            binding" evidence=IDA] InterPro:IPR009071 Pfam:PF00505
            GO:GO:0005634 GO:GO:0007399 GO:GO:0030154 GO:GO:0006355
            GO:GO:0043565 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 HOVERGEN:HBG005040 KO:K09268
            InterPro:IPR017386 PIRSF:PIRSF038098 EMBL:D86076 EMBL:D83650
            PIR:S72169 RefSeq:NP_001135834.1 UniGene:Xl.891 GeneID:100216330
            KEGG:xla:100216330 CTD:100216330 Xenbase:XB-GENE-6252061
            Uniprot:Q91731
        Length = 382

 Score = 100 (40.3 bits), Expect = 0.00014, P = 0.00014
 Identities = 19/69 (27%), Positives = 41/69 (59%)

Query:    43 KRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAE 102
             KRP++A+ ++ +  R+   E  PD  + A + K  G++WK ++++EK P++++A   + +
Sbjct:    48 KRPMNAFMVWSKIERRKIMEQSPDMHN-AEISKRLGKRWKMLNDSEKIPFIREAERLRLK 106

Query:   103 YELALEAYK 111
             +      YK
Sbjct:   107 HMADYPDYK 115


>UNIPROTKB|Q66JF1 [details] [associations]
            symbol:sox11 "Transcription factor Sox-11" species:8364
            "Xenopus (Silurana) tropicalis" [GO:0007399 "nervous system
            development" evidence=ISS] [GO:0043565 "sequence-specific DNA
            binding" evidence=ISS] InterPro:IPR009071 Pfam:PF00505
            GO:GO:0005634 GO:GO:0007399 GO:GO:0030154 GO:GO:0006355
            GO:GO:0043565 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 CTD:6664 KO:K09268
            InterPro:IPR017386 PIRSF:PIRSF038098 eggNOG:NOG130659 EMBL:AC148407
            EMBL:BC080939 RefSeq:NP_001008053.1 UniGene:Str.15716 HSSP:P48432
            ProteinModelPortal:Q66JF1 SMR:Q66JF1 STRING:Q66JF1 GeneID:493415
            KEGG:xtr:493415 Xenbase:XB-GENE-483418 Uniprot:Q66JF1
        Length = 383

 Score = 100 (40.3 bits), Expect = 0.00014, P = 0.00014
 Identities = 19/69 (27%), Positives = 41/69 (59%)

Query:    43 KRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAE 102
             KRP++A+ ++ +  R+   E  PD  + A + K  G++WK ++++EK P++++A   + +
Sbjct:    49 KRPMNAFMVWSKIERRKIMEQSPDMHN-AEISKRLGKRWKMLNDSEKIPFIREAERLRLK 107

Query:   103 YELALEAYK 111
             +      YK
Sbjct:   108 HMADYPDYK 116


>UNIPROTKB|Q6VVD7 [details] [associations]
            symbol:sox8 "Transcription factor Sox-8" species:8355
            "Xenopus laevis" [GO:0014029 "neural crest formation" evidence=IMP]
            InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634 GO:GO:0006355
            GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0014029 KO:K09270
            InterPro:IPR022151 Pfam:PF12444 HSSP:P48432 CTD:30812 EMBL:AY324658
            EMBL:BC169521 EMBL:BC169525 RefSeq:NP_001083964.1 UniGene:Xl.29789
            ProteinModelPortal:Q6VVD7 SMR:Q6VVD7 GeneID:399214 KEGG:xla:399214
            Xenbase:XB-GENE-480869 Uniprot:Q6VVD7
        Length = 459

 Score = 101 (40.6 bits), Expect = 0.00014, P = 0.00014
 Identities = 20/71 (28%), Positives = 41/71 (57%)

Query:    43 KRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAE 102
             KRP++A+ ++ +  R+   + +P   + A + K  G+ W+ +SE EK P+V++A   + +
Sbjct:    99 KRPMNAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLSENEKRPFVEEAERLRVQ 157

Query:   103 YELALEAYKKQ 113
             ++     YK Q
Sbjct:   158 HKKDHPDYKYQ 168


>UNIPROTKB|F1P1Z5 [details] [associations]
            symbol:SOX8 "Transcription factor SOX-8" species:9031
            "Gallus gallus" [GO:0000979 "RNA polymerase II core promoter
            sequence-specific DNA binding" evidence=IEA] [GO:0001649
            "osteoblast differentiation" evidence=IEA] [GO:0001701 "in utero
            embryonic development" evidence=IEA] [GO:0001755 "neural crest cell
            migration" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0007165
            "signal transduction" evidence=IEA] [GO:0007283 "spermatogenesis"
            evidence=IEA] [GO:0007422 "peripheral nervous system development"
            evidence=IEA] [GO:0008134 "transcription factor binding"
            evidence=IEA] [GO:0010817 "regulation of hormone levels"
            evidence=IEA] [GO:0014015 "positive regulation of gliogenesis"
            evidence=IEA] [GO:0033690 "positive regulation of osteoblast
            proliferation" evidence=IEA] [GO:0043066 "negative regulation of
            apoptotic process" evidence=IEA] [GO:0045444 "fat cell
            differentiation" evidence=IEA] [GO:0045662 "negative regulation of
            myoblast differentiation" evidence=IEA] [GO:0045892 "negative
            regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IEA] [GO:0046533 "negative
            regulation of photoreceptor cell differentiation" evidence=IEA]
            [GO:0048469 "cell maturation" evidence=IEA] [GO:0048484 "enteric
            nervous system development" evidence=IEA] [GO:0048709
            "oligodendrocyte differentiation" evidence=IEA] [GO:0060009
            "Sertoli cell development" evidence=IEA] [GO:0060018 "astrocyte
            fate commitment" evidence=IEA] [GO:0060221 "retinal rod cell
            differentiation" evidence=IEA] [GO:0060612 "adipose tissue
            development" evidence=IEA] [GO:0061138 "morphogenesis of a
            branching epithelium" evidence=IEA] [GO:0072034 "renal vesicle
            induction" evidence=IEA] [GO:0072197 "ureter morphogenesis"
            evidence=IEA] [GO:0072289 "metanephric nephron tubule formation"
            evidence=IEA] [GO:0090190 "positive regulation of branching
            involved in ureteric bud morphogenesis" evidence=IEA]
            InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634 GO:GO:0005737
            GO:GO:0045892 GO:GO:0007165 GO:GO:0043066 GO:GO:0045944
            GO:GO:0003700 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0090190 GO:GO:0045444 GO:GO:0000979
            GO:GO:0010817 GO:GO:0033690 GO:GO:0045662
            GeneTree:ENSGT00670000097649 InterPro:IPR022151 Pfam:PF12444
            IPI:IPI00593054 OMA:DQSHGSP GO:GO:0072034 EMBL:AADN02023690
            Ensembl:ENSGALT00000008449 Uniprot:F1P1Z5
        Length = 470

 Score = 101 (40.6 bits), Expect = 0.00015, P = 0.00015
 Identities = 20/71 (28%), Positives = 41/71 (57%)

Query:    43 KRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAE 102
             KRP++A+ ++ +  R+   + +P   + A + K  G+ W+ +SE EK P+V++A   + +
Sbjct:   110 KRPMNAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLSENEKRPFVEEAERLRVQ 168

Query:   103 YELALEAYKKQ 113
             ++     YK Q
Sbjct:   169 HKKDHPDYKYQ 179


>UNIPROTKB|P57074 [details] [associations]
            symbol:SOX8 "Transcription factor SOX-8" species:9031
            "Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0003170 "heart valve
            development" evidence=IEP] [GO:0048709 "oligodendrocyte
            differentiation" evidence=IEP] InterPro:IPR009071 Pfam:PF00505
            GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0048709 GO:GO:0003170 HOGENOM:HOG000108876 HOVERGEN:HBG002061
            KO:K09270 InterPro:IPR022151 Pfam:PF12444 EMBL:AF228664
            IPI:IPI00593054 RefSeq:NP_990062.1 UniGene:Gga.4309
            ProteinModelPortal:P57074 SMR:P57074 GeneID:395483 KEGG:gga:395483
            CTD:30812 eggNOG:NOG324597 InParanoid:P57074 OrthoDB:EOG4ZKJMD
            NextBio:20815563 Uniprot:P57074
        Length = 470

 Score = 101 (40.6 bits), Expect = 0.00015, P = 0.00015
 Identities = 20/71 (28%), Positives = 41/71 (57%)

Query:    43 KRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAE 102
             KRP++A+ ++ +  R+   + +P   + A + K  G+ W+ +SE EK P+V++A   + +
Sbjct:   110 KRPMNAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLSENEKRPFVEEAERLRVQ 168

Query:   103 YELALEAYKKQ 113
             ++     YK Q
Sbjct:   169 HKKDHPDYKYQ 179


>UNIPROTKB|Q6DFF5 [details] [associations]
            symbol:sox9-b "Transcription factor Sox-9-B" species:8355
            "Xenopus laevis" [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
            "cytoplasm" evidence=ISS] [GO:0014029 "neural crest formation"
            evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
            [GO:0043049 "otic placode formation" evidence=ISS] [GO:0045893
            "positive regulation of transcription, DNA-dependent" evidence=ISS]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=ISS] [GO:0051216 "cartilage
            development" evidence=ISS] InterPro:IPR009071 Pfam:PF00505
            GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0045944
            GO:GO:0006351 GO:GO:0019899 GO:GO:0007506 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0051216
            GO:GO:0043049 GO:GO:0014029 KO:K09270 InterPro:IPR022151
            Pfam:PF12444 HSSP:P48432 EMBL:AB439583 EMBL:BC076783
            RefSeq:NP_001087942.1 UniGene:Xl.28992 ProteinModelPortal:Q6DFF5
            SMR:Q6DFF5 GeneID:494585 KEGG:xla:494585 CTD:494585
            Xenbase:XB-GENE-1034775 Uniprot:Q6DFF5
        Length = 476

 Score = 101 (40.6 bits), Expect = 0.00015, P = 0.00015
 Identities = 21/76 (27%), Positives = 43/76 (56%)

Query:    40 NAP--KRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             N P  KRP++A+ ++ +  R+   + +P   + A + K  G+ W+ ++E EK P+V++A 
Sbjct:   101 NKPHVKRPMNAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLNEGEKRPFVEEAE 159

Query:    98 NKKAEYELALEAYKKQ 113
               + +++     YK Q
Sbjct:   160 RLRVQHKKDHPDYKYQ 175


>UNIPROTKB|B7ZR65 [details] [associations]
            symbol:sox9-a "Transcription factor Sox-9-A" species:8355
            "Xenopus laevis" [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=ISS;IDA] [GO:0005737 "cytoplasm"
            evidence=ISS] [GO:0014029 "neural crest formation" evidence=IMP]
            [GO:0019899 "enzyme binding" evidence=IPI] [GO:0043049 "otic
            placode formation" evidence=IMP] [GO:0045893 "positive regulation
            of transcription, DNA-dependent" evidence=IMP] [GO:0045944
            "positive regulation of transcription from RNA polymerase II
            promoter" evidence=IMP] [GO:0051216 "cartilage development"
            evidence=ISS] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
            GO:GO:0005737 GO:GO:0003677 GO:GO:0045944 GO:GO:0006351
            GO:GO:0007506 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0051216 GO:GO:0043049 GO:GO:0014029
            InterPro:IPR022151 Pfam:PF12444 EMBL:AY035397 EMBL:BC170058
            EMBL:BC170060 RefSeq:NP_001084276.1 UniGene:Xl.1690 GeneID:399405
            KEGG:xla:399405 CTD:399405 Xenbase:XB-GENE-6253910 Uniprot:B7ZR65
        Length = 477

 Score = 101 (40.6 bits), Expect = 0.00015, P = 0.00015
 Identities = 21/76 (27%), Positives = 43/76 (56%)

Query:    40 NAP--KRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             N P  KRP++A+ ++ +  R+   + +P   + A + K  G+ W+ ++E EK P+V++A 
Sbjct:   101 NKPHVKRPMNAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLNEGEKRPFVEEAE 159

Query:    98 NKKAEYELALEAYKKQ 113
               + +++     YK Q
Sbjct:   160 RLRVQHKKDHPDYKYQ 175


>UNIPROTKB|Q00059 [details] [associations]
            symbol:TFAM "Transcription factor A, mitochondrial"
            species:9606 "Homo sapiens" [GO:0031072 "heat shock protein
            binding" evidence=IEA] [GO:0033108 "mitochondrial respiratory chain
            complex assembly" evidence=IEA] [GO:0070363 "mitochondrial light
            strand promoter sense binding" evidence=IDA] [GO:0045893 "positive
            regulation of transcription, DNA-dependent" evidence=IDA]
            [GO:0006391 "transcription initiation from mitochondrial promoter"
            evidence=IDA;TAS] [GO:0003682 "chromatin binding" evidence=IDA]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=IMP] [GO:0006390 "transcription from
            mitochondrial promoter" evidence=IMP;TAS] [GO:0008301 "DNA binding,
            bending" evidence=IDA] [GO:0006356 "regulation of transcription
            from RNA polymerase I promoter" evidence=TAS] [GO:0006261
            "DNA-dependent DNA replication" evidence=TAS] [GO:0005759
            "mitochondrial matrix" evidence=TAS] [GO:0010467 "gene expression"
            evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0042645 "mitochondrial nucleoid" evidence=IDA] [GO:0005739
            "mitochondrion" evidence=IDA] Reactome:REACT_71 InterPro:IPR009071
            Pfam:PF00505 GO:GO:0045893 GO:GO:0003700 GO:GO:0003682
            GO:GO:0006261 GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0042645 Reactome:REACT_1788
            GO:GO:0006356 GO:GO:0033108 Pfam:PF09011 GO:GO:0006391 CTD:7019
            eggNOG:NOG297801 HOGENOM:HOG000139423 HOVERGEN:HBG106674 KO:K11830
            GO:GO:0070363 EMBL:M62810 EMBL:EU279428 EMBL:BT019658 EMBL:BT019659
            EMBL:AK312558 EMBL:AB451241 EMBL:AB451366 EMBL:AC023170
            EMBL:BC126366 EMBL:X64269 IPI:IPI00020928 PIR:JC1496
            RefSeq:NP_003192.1 UniGene:Hs.594250 PDB:3FGH PDB:3TMM PDB:3TQ6
            PDBsum:3FGH PDBsum:3TMM PDBsum:3TQ6 ProteinModelPortal:Q00059
            SMR:Q00059 IntAct:Q00059 STRING:Q00059 PhosphoSite:Q00059
            DMDM:417324 PaxDb:Q00059 PRIDE:Q00059 DNASU:7019
            Ensembl:ENST00000487519 GeneID:7019 KEGG:hsa:7019 UCSC:uc001jkf.3
            GeneCards:GC10P060146 HGNC:HGNC:11741 HPA:HPA040648 MIM:600438
            neXtProt:NX_Q00059 PharmGKB:PA36458 InParanoid:Q00059 OMA:YENEMKS
            OrthoDB:EOG4KKZ4D PhylomeDB:Q00059 ChiTaRS:TFAM
            EvolutionaryTrace:Q00059 GenomeRNAi:7019 NextBio:27419
            ArrayExpress:Q00059 Bgee:Q00059 CleanEx:HS_TFAM
            Genevestigator:Q00059 GermOnline:ENSG00000108064 Uniprot:Q00059
        Length = 246

 Score = 99 (39.9 bits), Expect = 0.00016, P = 0.00016
 Identities = 22/77 (28%), Positives = 42/77 (54%)

Query:    42 PKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKA 101
             PKRP SAY +++ +  +  K   P  K      K   + WK++S++EK  Y+Q A   + 
Sbjct:   155 PKRPRSAYNVYVAERFQEAKGDSPQEKL-----KTVKENWKNLSDSEKELYIQHAKEDET 209

Query:   102 EYELALEAYKKQLNDNG 118
              Y   ++++++Q+ + G
Sbjct:   210 RYHNEMKSWEEQMIEVG 226


>UNIPROTKB|F1LZ54 [details] [associations]
            symbol:F1LZ54 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
            InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
            GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 Pfam:PF09011 IPI:IPI00765905
            Ensembl:ENSRNOT00000045990 Uniprot:F1LZ54
        Length = 160

 Score = 97 (39.2 bits), Expect = 0.00016, P = 0.00016
 Identities = 20/69 (28%), Positives = 37/69 (53%)

Query:    43 KRPLSAYFIFMEDFRKSFKESFPDNK-SVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKA 101
             K  L++Y  F++ +++  K+  PD+  + +   K   ++WK+MS  EK  +   A   KA
Sbjct:    10 KVKLNSYAFFVQAYQEEHKKKHPDSSVNFSEFSKKCSERWKTMSAKEKGKFEDVAKADKA 69

Query:   102 EYELALEAY 110
              YE  ++ Y
Sbjct:    70 HYEREMKTY 78


>UNIPROTKB|Q9BG89 [details] [associations]
            symbol:SOX9 "Transcription factor SOX-9" species:9598 "Pan
            troglodytes" [GO:0001046 "core promoter sequence-specific DNA
            binding" evidence=ISS] [GO:0001077 "RNA polymerase II core promoter
            proximal region sequence-specific DNA binding transcription factor
            activity involved in positive regulation of transcription"
            evidence=ISS] [GO:0001158 "enhancer sequence-specific DNA binding"
            evidence=ISS] [GO:0001501 "skeletal system development"
            evidence=ISS] [GO:0001502 "cartilage condensation" evidence=ISS]
            [GO:0001708 "cell fate specification" evidence=ISS] [GO:0001837
            "epithelial to mesenchymal transition" evidence=ISS] [GO:0001894
            "tissue homeostasis" evidence=ISS] [GO:0001934 "positive regulation
            of protein phosphorylation" evidence=ISS] [GO:0001942 "hair
            follicle development" evidence=ISS] [GO:0002053 "positive
            regulation of mesenchymal cell proliferation" evidence=ISS]
            [GO:0002683 "negative regulation of immune system process"
            evidence=ISS] [GO:0003170 "heart valve development" evidence=ISS]
            [GO:0003179 "heart valve morphogenesis" evidence=ISS] [GO:0003203
            "endocardial cushion morphogenesis" evidence=ISS] [GO:0003413
            "chondrocyte differentiation involved in endochondral bone
            morphogenesis" evidence=ISS] [GO:0003415 "chondrocyte hypertrophy"
            evidence=ISS] [GO:0003682 "chromatin binding" evidence=ISS]
            [GO:0003705 "RNA polymerase II distal enhancer sequence-specific
            DNA binding transcription factor activity" evidence=ISS]
            [GO:0004672 "protein kinase activity" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISS] [GO:0006334 "nucleosome assembly"
            evidence=ISS] [GO:0006338 "chromatin remodeling" evidence=ISS]
            [GO:0006461 "protein complex assembly" evidence=ISS] [GO:0006468
            "protein phosphorylation" evidence=ISS] [GO:0007165 "signal
            transduction" evidence=ISS] [GO:0007173 "epidermal growth factor
            receptor signaling pathway" evidence=ISS] [GO:0007283
            "spermatogenesis" evidence=ISS] [GO:0008284 "positive regulation of
            cell proliferation" evidence=ISS] [GO:0010564 "regulation of cell
            cycle process" evidence=ISS] [GO:0010634 "positive regulation of
            epithelial cell migration" evidence=ISS] [GO:0014068 "positive
            regulation of phosphatidylinositol 3-kinase cascade" evidence=ISS]
            [GO:0019100 "male germ-line sex determination" evidence=ISS]
            [GO:0019933 "cAMP-mediated signaling" evidence=ISS] [GO:0030279
            "negative regulation of ossification" evidence=ISS] [GO:0030858
            "positive regulation of epithelial cell differentiation"
            evidence=ISS] [GO:0030916 "otic vesicle formation" evidence=ISS]
            [GO:0032331 "negative regulation of chondrocyte differentiation"
            evidence=ISS] [GO:0032332 "positive regulation of chondrocyte
            differentiation" evidence=ISS] [GO:0035019 "somatic stem cell
            maintenance" evidence=ISS] [GO:0035326 "enhancer binding"
            evidence=ISS] [GO:0042127 "regulation of cell proliferation"
            evidence=ISS] [GO:0042981 "regulation of apoptotic process"
            evidence=ISS] [GO:0043066 "negative regulation of apoptotic
            process" evidence=ISS] [GO:0043234 "protein complex" evidence=ISS]
            [GO:0043491 "protein kinase B signaling cascade" evidence=ISS]
            [GO:0045662 "negative regulation of myoblast differentiation"
            evidence=ISS] [GO:0045892 "negative regulation of transcription,
            DNA-dependent" evidence=ISS] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=ISS]
            [GO:0046533 "negative regulation of photoreceptor cell
            differentiation" evidence=ISS] [GO:0050679 "positive regulation of
            epithelial cell proliferation" evidence=ISS] [GO:0050680 "negative
            regulation of epithelial cell proliferation" evidence=ISS]
            [GO:0051216 "cartilage development" evidence=ISS] [GO:0060008
            "Sertoli cell differentiation" evidence=ISS] [GO:0060041 "retina
            development in camera-type eye" evidence=ISS] [GO:0060221 "retinal
            rod cell differentiation" evidence=ISS] [GO:0060517 "epithelial
            cell proliferation involved in prostatic bud elongation"
            evidence=ISS] [GO:0060729 "intestinal epithelial structure
            maintenance" evidence=ISS] [GO:0060784 "regulation of cell
            proliferation involved in tissue homeostasis" evidence=ISS]
            [GO:0061138 "morphogenesis of a branching epithelium" evidence=ISS]
            [GO:0070168 "negative regulation of biomineral tissue development"
            evidence=ISS] [GO:0070371 "ERK1 and ERK2 cascade" evidence=ISS]
            [GO:0071260 "cellular response to mechanical stimulus"
            evidence=ISS] [GO:0071364 "cellular response to epidermal growth
            factor stimulus" evidence=ISS] [GO:0071504 "cellular response to
            heparin" evidence=ISS] [GO:0072034 "renal vesicle induction"
            evidence=ISS] [GO:0072289 "metanephric nephron tubule formation"
            evidence=ISS] [GO:0090090 "negative regulation of canonical Wnt
            receptor signaling pathway" evidence=ISS] [GO:0090103 "cochlea
            morphogenesis" evidence=ISS] [GO:0090184 "positive regulation of
            kidney development" evidence=ISS] [GO:0090190 "positive regulation
            of branching involved in ureteric bud morphogenesis" evidence=ISS]
            [GO:2000020 "positive regulation of male gonad development"
            evidence=ISS] [GO:2000741 "positive regulation of mesenchymal stem
            cell differentiation" evidence=ISS] InterPro:IPR009071 Pfam:PF00505
            GO:GO:0001708 GO:GO:0007173 GO:GO:0045892 GO:GO:0043066
            GO:GO:0006461 GO:GO:0019933 GO:GO:0070371 GO:GO:0014068
            GO:GO:0007283 GO:GO:0003682 GO:GO:0003705 GO:GO:0001077
            GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0004672 GO:GO:0071504 GO:GO:0001942
            GO:GO:0032332 GO:GO:0030279 GO:GO:0090090 GO:GO:0071260
            GO:GO:0035019 GO:GO:0001934 GO:GO:0090190 GO:GO:0071364
            GO:GO:0043491 GO:GO:0001502 GO:GO:0001837 GO:GO:0050680
            GO:GO:0001158 GO:GO:0030858 GO:GO:0010634 GO:GO:0016585
            GO:GO:0006334 GO:GO:0003413 GO:GO:0050679 GO:GO:0002053
            GO:GO:0001046 GO:GO:0003203 GO:GO:0032331 GO:GO:0045662
            GO:GO:0060008 GO:GO:0030916 GO:GO:2000020 GO:GO:0046533
            GO:GO:0090103 GO:GO:0010564 GO:GO:0019100 GO:GO:0003179
            GO:GO:0070168 GO:GO:0072289 eggNOG:NOG295709 HOGENOM:HOG000108876
            HOVERGEN:HBG002061 KO:K09270 InterPro:IPR022151 Pfam:PF12444
            GO:GO:2000741 GO:GO:0072034 GO:GO:0060221 OrthoDB:EOG4TXBRZ
            GO:GO:0003415 GO:GO:0060517 GO:GO:0060729 GO:GO:0002683
            GO:GO:0060784 CTD:6662 EMBL:AF322902 RefSeq:NP_001009029.1
            UniGene:Ptr.6522 ProteinModelPortal:Q9BG89 SMR:Q9BG89 STRING:Q9BG89
            GeneID:450101 KEGG:ptr:450101 InParanoid:Q9BG89 NextBio:20833065
            Uniprot:Q9BG89
        Length = 509

 Score = 101 (40.6 bits), Expect = 0.00016, P = 0.00016
 Identities = 21/76 (27%), Positives = 44/76 (57%)

Query:    40 NAP--KRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
             N P  KRP++A+ ++ +  R+   + +P   + A + K  G+ W+ ++E+EK P+V++A 
Sbjct:   101 NKPHVKRPMNAFMVWAQAARRKLGDQYPHLHN-AELSKTLGKLWRLLNESEKRPFVEEAE 159

Query:    98 NKKAEYELALEAYKKQ 113
               + +++     YK Q
Sbjct:   160 RLRVQHKKDHPDYKYQ 175


>WB|WBGene00004077 [details] [associations]
            symbol:pop-1 species:6239 "Caenorhabditis elegans"
            [GO:0016055 "Wnt receptor signaling pathway" evidence=IEA]
            [GO:0009792 "embryo development ending in birth or egg hatching"
            evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0009790
            "embryo development" evidence=IMP] [GO:0001703 "gastrulation with
            mouth forming first" evidence=IMP] [GO:0002009 "morphogenesis of an
            epithelium" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
            development" evidence=IMP] [GO:0007052 "mitotic spindle
            organization" evidence=IMP] [GO:0016246 "RNA interference"
            evidence=IMP] [GO:0040027 "negative regulation of vulval
            development" evidence=IMP] [GO:0006915 "apoptotic process"
            evidence=IMP] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=IMP;IDA] [GO:0010085
            "polarity specification of proximal/distal axis" evidence=IGI]
            [GO:0042659 "regulation of cell fate specification" evidence=IGI]
            [GO:0009786 "regulation of asymmetric cell division" evidence=IGI]
            [GO:0007500 "mesodermal cell fate determination" evidence=IGI;IMP]
            [GO:0006357 "regulation of transcription from RNA polymerase II
            promoter" evidence=ISS] [GO:0043282 "pharyngeal muscle development"
            evidence=IGI;IMP] [GO:0009880 "embryonic pattern specification"
            evidence=IGI;IMP] [GO:0040026 "positive regulation of vulval
            development" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0008013 "beta-catenin binding" evidence=IPI] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=ISS;IDA] [GO:0043565 "sequence-specific DNA binding"
            evidence=IDA] [GO:0008134 "transcription factor binding"
            evidence=IPI] [GO:0035035 "histone acetyltransferase binding"
            evidence=IPI] [GO:0000977 "RNA polymerase II regulatory region
            sequence-specific DNA binding" evidence=IDA] InterPro:IPR009071
            InterPro:IPR024940 Pfam:PF00505 GO:GO:0009792 GO:GO:0002009
            GO:GO:0005737 GO:GO:0006915 GO:GO:0045892 GO:GO:0007052
            GO:GO:0016246 GO:GO:0045944 GO:GO:0003700 GO:GO:0005667
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0040035 GO:GO:0009786 GO:GO:0009880 GO:GO:0008356
            GO:GO:0060070 GO:GO:0040027 GO:GO:0000977 GO:GO:0040026
            GO:GO:0042659 GO:GO:0007500 GO:GO:0001703 GO:GO:0043282
            PANTHER:PTHR10373 GO:GO:0010085 eggNOG:NOG252916
            GeneTree:ENSGT00390000009964 HOGENOM:HOG000184838 EMBL:U37532
            EMBL:FO081765 PIR:A57667 PIR:C87732 PIR:T32931 RefSeq:NP_491053.4
            UniGene:Cel.19670 PDB:3C2G PDBsum:3C2G ProteinModelPortal:Q10666
            SMR:Q10666 DIP:DIP-25683N IntAct:Q10666 MINT:MINT-214603
            STRING:Q10666 PaxDb:Q10666 EnsemblMetazoa:W10C8.2 GeneID:171849
            KEGG:cel:CELE_W10C8.2 UCSC:W10C8.2 CTD:171849 WormBase:W10C8.2
            InParanoid:Q10666 OMA:QQLADDK EvolutionaryTrace:Q10666
            NextBio:872963 Uniprot:Q10666
        Length = 438

 Score = 100 (40.3 bits), Expect = 0.00017, P = 0.00017
 Identities = 21/63 (33%), Positives = 37/63 (58%)

Query:    43 KRPLSAYFIFMEDFRKSFKESFPDN-KSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKA 101
             K+PL+A+  FM++ RK+  E   +N K  A + K  G++W  +S+ E+A Y + A   K 
Sbjct:   193 KKPLNAFMWFMKENRKALLEEIGNNEKQSAELNKELGKRWHDLSKEEQAKYFEMAKKDKE 252

Query:   102 EYE 104
              ++
Sbjct:   253 THK 255


>UNIPROTKB|Q10666 [details] [associations]
            symbol:pop-1 "Protein pop-1" species:6239 "Caenorhabditis
            elegans" [GO:0005515 "protein binding" evidence=IPI] [GO:0008356
            "asymmetric cell division" evidence=IMP] [GO:0045892 "negative
            regulation of transcription, DNA-dependent" evidence=IDA]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0008134 "transcription factor binding"
            evidence=IPI] [GO:0042826 "histone deacetylase binding"
            evidence=IPI] [GO:0019901 "protein kinase binding" evidence=IPI]
            [GO:0016055 "Wnt receptor signaling pathway" evidence=IBA;TAS]
            [GO:0060070 "canonical Wnt receptor signaling pathway"
            evidence=IBA] [GO:0044212 "transcription regulatory region DNA
            binding" evidence=IBA] [GO:0005667 "transcription factor complex"
            evidence=IBA] InterPro:IPR009071 InterPro:IPR024940 Pfam:PF00505
            GO:GO:0009792 GO:GO:0002009 GO:GO:0005737 GO:GO:0006915
            GO:GO:0045892 GO:GO:0007052 GO:GO:0016246 GO:GO:0045944
            GO:GO:0003700 GO:GO:0005667 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0040035 GO:GO:0009786
            GO:GO:0009880 GO:GO:0008356 GO:GO:0060070 GO:GO:0040027
            GO:GO:0000977 GO:GO:0040026 GO:GO:0042659 GO:GO:0007500
            GO:GO:0001703 GO:GO:0043282 PANTHER:PTHR10373 GO:GO:0010085
            eggNOG:NOG252916 GeneTree:ENSGT00390000009964 HOGENOM:HOG000184838
            EMBL:U37532 EMBL:FO081765 PIR:A57667 PIR:C87732 PIR:T32931
            RefSeq:NP_491053.4 UniGene:Cel.19670 PDB:3C2G PDBsum:3C2G
            ProteinModelPortal:Q10666 SMR:Q10666 DIP:DIP-25683N IntAct:Q10666
            MINT:MINT-214603 STRING:Q10666 PaxDb:Q10666 EnsemblMetazoa:W10C8.2
            GeneID:171849 KEGG:cel:CELE_W10C8.2 UCSC:W10C8.2 CTD:171849
            WormBase:W10C8.2 InParanoid:Q10666 OMA:QQLADDK
            EvolutionaryTrace:Q10666 NextBio:872963 Uniprot:Q10666
        Length = 438

 Score = 100 (40.3 bits), Expect = 0.00017, P = 0.00017
 Identities = 21/63 (33%), Positives = 37/63 (58%)

Query:    43 KRPLSAYFIFMEDFRKSFKESFPDN-KSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKA 101
             K+PL+A+  FM++ RK+  E   +N K  A + K  G++W  +S+ E+A Y + A   K 
Sbjct:   193 KKPLNAFMWFMKENRKALLEEIGNNEKQSAELNKELGKRWHDLSKEEQAKYFEMAKKDKE 252

Query:   102 EYE 104
              ++
Sbjct:   253 THK 255

WARNING:  HSPs involving 23 database sequences were not reported due to the
          limiting value of parameter B = 250.


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.312   0.126   0.359    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      168       137   0.00091  102 3  11 23  0.48    31
                                                     30  0.45    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  273
  No. of states in DFA:  568 (60 KB)
  Total size of DFA:  136 KB (2085 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.57u 0.15s 14.72t   Elapsed:  00:00:01
  Total cpu time:  14.59u 0.15s 14.74t   Elapsed:  00:00:01
  Start:  Tue May 21 02:16:45 2013   End:  Tue May 21 02:16:46 2013
WARNINGS ISSUED:  2

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