BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044275
(168 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P93047|HMGB3_ARATH High mobility group B protein 3 OS=Arabidopsis thaliana GN=HMGB3
PE=1 SV=1
Length = 141
Score = 117 bits (293), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/106 (59%), Positives = 78/106 (73%), Gaps = 1/106 (0%)
Query: 27 KPKKEKAGKKKDSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSE 86
KP K G KD N PKRP SA+F+FMEDFR ++KE P NKSVAA+GKAGG+KWKS+S+
Sbjct: 20 KPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSD 79
Query: 87 AEKAPYVQKALNKKAEYELALEAYKKQLNDNGAGVSEDSWKSTSEV 132
+EKAPYV KA +K EYE ++AY K+L + G E+S KS SEV
Sbjct: 80 SEKAPYVAKADKRKVEYEKNMKAYNKKL-EEGPKEDEESDKSVSEV 124
>sp|P40620|HMGL_VICFA HMG1/2-like protein OS=Vicia faba PE=2 SV=1
Length = 149
Score = 112 bits (280), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/96 (60%), Positives = 72/96 (75%), Gaps = 2/96 (2%)
Query: 37 KDSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKA 96
KD N PKRP SA+F+FM DFR+ +K+ P+NKSVAA+GKA G++WKS+SE EKAPYV +A
Sbjct: 40 KDPNKPKRPPSAFFVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRA 99
Query: 97 LNKKAEYELALEAYKKQLNDNGAGVSEDSWKSTSEV 132
L KK EYE+ L+AY K+L G E S KS SEV
Sbjct: 100 LKKKEEYEITLQAYNKKL--EGKDDEEGSDKSKSEV 133
>sp|O49596|HMGB2_ARATH High mobility group B protein 2 OS=Arabidopsis thaliana GN=HMGB2
PE=1 SV=1
Length = 144
Score = 110 bits (275), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 57/96 (59%), Positives = 72/96 (75%), Gaps = 1/96 (1%)
Query: 37 KDSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKA 96
KD N PKRP SA+F+FMEDFR++FK+ P NKSVA +GKA G KWKS+S++EKAPYV KA
Sbjct: 33 KDPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKA 92
Query: 97 LNKKAEYELALEAYKKQLNDNGAGVSEDSWKSTSEV 132
+K EYE ++AY K+L + G E+S KS SEV
Sbjct: 93 EKRKVEYEKNIKAYNKKL-EEGPKEDEESDKSVSEV 127
>sp|O49595|HMGB1_ARATH High mobility group B protein 1 OS=Arabidopsis thaliana GN=HMGB1
PE=1 SV=1
Length = 178
Score = 108 bits (271), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/112 (54%), Positives = 77/112 (68%), Gaps = 14/112 (12%)
Query: 36 KKDSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQK 95
KKD N PKR SA+F+F+EDFR +FK+ P+ K+V+A+GKAGGQKWKSMS+AEKAPY +K
Sbjct: 47 KKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEK 106
Query: 96 ALNKKAEYELALEAYKKQLNDNGAGVSEDSWKSTSEVQSGKSSSSEINDEAE 147
A +KAEYE ++AY K L + G+ SE S SEINDE E
Sbjct: 107 AAKRKAEYEKQMDAYNKNL-EEGSDESE-------------KSRSEINDEDE 144
>sp|P40619|HMGL_IPONI HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1
Length = 144
Score = 106 bits (265), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 65/142 (45%), Positives = 82/142 (57%), Gaps = 24/142 (16%)
Query: 9 VAQKKPHADMLKARKAENKPKKEKAGKKKDSNAPKRPLSAYFIFMEDFRKSFKESFPDNK 68
+A KK AD K +KA KD N PKRP SA+F+FMEDFRK++KE P+NK
Sbjct: 14 LAVKKQAADTKKTKKAV-----------KDPNKPKRPPSAFFVFMEDFRKTYKEKHPNNK 62
Query: 69 SVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYELALEAY-KKQLNDNGAGVSEDSWK 127
SVA +GKAGG KWK ++ AEKAP++ KA +K EYE L+AY KKQ D
Sbjct: 63 SVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNKKQAAGAAEEEESD--- 119
Query: 128 STSEVQSGKSSSSEINDEAEQE 149
S SE+ND+ E +
Sbjct: 120 ---------KSRSEVNDDDEDQ 132
>sp|Q42344|HMGB4_ARATH High mobility group B protein 4 OS=Arabidopsis thaliana GN=HMGB4
PE=1 SV=1
Length = 138
Score = 100 bits (249), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 57/121 (47%), Positives = 77/121 (63%), Gaps = 2/121 (1%)
Query: 27 KPKKEKAGKK--KDSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSM 84
K + KAGKK KD N PKRP SA+F+F+EDFRK F + P+NKSVA +GKA G +WK+M
Sbjct: 18 KTRGRKAGKKTKKDPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATVGKAAGARWKAM 77
Query: 85 SEAEKAPYVQKALNKKAEYELALEAYKKQLNDNGAGVSEDSWKSTSEVQSGKSSSSEIND 144
++ +KAPYV KA ++K EY ++ Y +L +DS KS SEV S +D
Sbjct: 78 TDEDKAPYVAKAESRKTEYIKNVQQYNLKLASGTNREEDDSDKSKSEVDEAVSEEEAEDD 137
Query: 145 E 145
+
Sbjct: 138 D 138
>sp|P26585|HMGL_SOYBN HMG1/2-like protein OS=Glycine max PE=2 SV=1
Length = 152
Score = 99.4 bits (246), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/84 (55%), Positives = 62/84 (73%)
Query: 37 KDSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKA 96
KD N PKRP SA+F+FME+FRK F + P+NK+V+A+GKA G KWK+MS+AEKAPYV K+
Sbjct: 39 KDPNKPKRPPSAFFVFMEEFRKVFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKS 98
Query: 97 LNKKAEYELALEAYKKQLNDNGAG 120
+K EYE + AY K+ + G
Sbjct: 99 EKRKVEYEKNMRAYNKKQAEGPTG 122
>sp|P27347|MNB1B_MAIZE DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=1 SV=1
Length = 157
Score = 97.1 bits (240), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 60/113 (53%), Positives = 72/113 (63%), Gaps = 3/113 (2%)
Query: 1 MKGPRVVAVAQKKPHADMLKARKAENKPKKEKAGKK-KDSNAPKRPLSAYFIFMEDFRKS 59
MKG + A K A + K KP K + GK KD N PKR SA+F+FME+FRK
Sbjct: 1 MKGAKSKGAA--KADAKLAVKSKGAEKPAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKE 58
Query: 60 FKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYELALEAYKK 112
FKE P NKSVAA+GKA G +WKS+SE++KAPYV KA K EY A+ AY K
Sbjct: 59 FKEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYNK 111
>sp|O49597|HMGB5_ARATH High mobility group B protein 5 OS=Arabidopsis thaliana GN=HMGB5
PE=2 SV=1
Length = 125
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 65/94 (69%), Gaps = 1/94 (1%)
Query: 32 KAGKK-KDSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKA 90
K GKK KD N PK+P S +F+F++DFRK F + PDNKSV +G+A G+KWK+M+E E+A
Sbjct: 23 KVGKKTKDPNRPKKPPSPFFVFLDDFRKEFNLANPDNKSVGNVGRAAGKKWKTMTEEERA 82
Query: 91 PYVQKALNKKAEYELALEAYKKQLNDNGAGVSED 124
P+V K+ +KK EY + ++ Y +L + +D
Sbjct: 83 PFVAKSQSKKTEYAVTMQQYNMELANGNKTTGDD 116
>sp|P40621|HMGL_WHEAT HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1
Length = 161
Score = 90.9 bits (224), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 45/75 (60%), Positives = 56/75 (74%)
Query: 38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
D N PKR SA+F+FM +FR+ FK+ P NKSVAA+GKA G++WKS+SE+EKAPYV KA
Sbjct: 38 DPNKPKRAPSAFFVFMGEFREEFKQKNPKNKSVAAVGKAAGERWKSLSESEKAPYVAKAN 97
Query: 98 NKKAEYELALEAYKK 112
K EY A+ AY K
Sbjct: 98 KLKGEYNKAIAAYNK 112
>sp|Q8LDF9|HMGB7_ARATH High mobility group B protein 7 OS=Arabidopsis thaliana GN=HMGB7
PE=1 SV=1
Length = 241
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/70 (55%), Positives = 48/70 (68%), Gaps = 3/70 (4%)
Query: 39 SNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAA-MGKAGGQKWKSMSEAEKAPYVQKAL 97
SN PKRPL+A+FIFM DFRK+FK N S+A K GG+KWKS++E EK Y+ KA
Sbjct: 112 SNKPKRPLTAFFIFMSDFRKTFKSEH--NGSLAKDAAKIGGEKWKSLTEEEKKVYLDKAA 169
Query: 98 NKKAEYELAL 107
KAEY +L
Sbjct: 170 ELKAEYNKSL 179
>sp|O64702|HMG14_ARATH High mobility group B protein 14 OS=Arabidopsis thaliana GN=HMGB14
PE=2 SV=2
Length = 151
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 51/85 (60%)
Query: 39 SNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALN 98
+ PK+P +A+F F++DFRK ++E PD KS+ +GK G+KWK+M+ EK Y A
Sbjct: 60 TKMPKKPATAFFFFLDDFRKQYQEENPDVKSMREIGKTCGEKWKTMTYEEKVKYYDIATE 119
Query: 99 KKAEYELALEAYKKQLNDNGAGVSE 123
K+ E+ A+ Y K++ SE
Sbjct: 120 KREEFHRAMTEYTKRMESGAHDESE 144
>sp|P07746|HMGT_ONCMY High mobility group-T protein OS=Oncorhynchus mykiss PE=2 SV=2
Length = 204
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 28 PKKEKAGKKKDSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEA 87
PK EK + KD NAPKRP SA+FIF DFR K P S+ + K G+KW +++
Sbjct: 80 PKGEKKKRFKDPNAPKRPSSAFFIFCADFRPQVKGETP-GLSIGDVAKKLGEKWNNLTAE 138
Query: 88 EKAPYVQKALNKKAEYELALEAYK 111
+K PY +KA K +YE + AY+
Sbjct: 139 DKVPYEKKASRLKEKYEKDITAYR 162
Score = 33.5 bits (75), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 37 KDSNAPKRPLSAYFIFMEDFRKSFKESFPD-NKSVAAMGKAGGQKWKSMSEAEKAPYVQK 95
KD P+ +S+Y F++ R+ K+ P+ + + + K ++WK+MS EK +
Sbjct: 3 KDPRKPRGKMSSYAYFVQTRREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFEDL 62
Query: 96 ALNKKAEYELALEAY 110
A K YE + +Y
Sbjct: 63 AKLDKVRYEREMRSY 77
>sp|Q5B995|NHP6_EMENI Non-histone chromosomal protein 6 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=nhp6 PE=3 SV=1
Length = 106
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 35 KKKDSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQ 94
KKKD NAPKR LSAY F D R +E P S +GK G+KWKS+S+ E+ PY
Sbjct: 20 KKKDPNAPKRGLSAYMFFANDNRDKVREENP-GISFGQVGKMLGEKWKSLSDKERKPYED 78
Query: 95 KALNKKAEYELALEAYK 111
KA K YE AYK
Sbjct: 79 KAAADKKRYEDEKAAYK 95
>sp|P0C6E5|HMG3M_HUMAN Putative high mobility group protein B3-like protein OS=Homo
sapiens PE=5 SV=1
Length = 187
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 32 KAGKKKDSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAP 91
K GKKKD NAPKRP S +F+F +F K + P + + K G+ WK+++++EK P
Sbjct: 82 KGGKKKDPNAPKRPPSGFFLFCSEFCPKSKSTNP-GIPIGDVAKKLGEMWKNLNDSEKQP 140
Query: 92 YVQKALNKKAEYELALEAYKKQLNDNGA 119
Y+ +A K +YE + YK + +GA
Sbjct: 141 YITQAAKLKEKYEKDVAVYKSKGKSDGA 168
Score = 30.0 bits (66), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 46 LSAYFIFMEDFRKSFKESFPDNK-SVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYE 104
+SAY F++ R+ K+ P + A K ++WK+MS+ EK+ + + A K Y+
Sbjct: 13 MSAYAFFVQTCREEHKKKNPKVPINFAEFSKKCSERWKTMSKKEKSKFNELAKADKVHYD 72
Query: 105 LALEAY 110
++ Y
Sbjct: 73 QEIKDY 78
>sp|Q6CC79|NHP6_YARLI Non-histone chromosomal protein 6 OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=NHP6 PE=3 SV=1
Length = 103
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 46/76 (60%), Gaps = 5/76 (6%)
Query: 38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVA--AMGKAGGQKWKSMSEAEKAPYVQK 95
D NAPKR LSAY F D R + + DN +A +GKA G+KWK++++AEK PY +K
Sbjct: 21 DPNAPKRALSAYMFFANDNRDAIRA---DNPGIAFGQVGKALGEKWKTLTDAEKVPYEEK 77
Query: 96 ALNKKAEYELALEAYK 111
A K YE AYK
Sbjct: 78 ATADKKRYEDEKAAYK 93
>sp|Q08945|SSRP1_HUMAN FACT complex subunit SSRP1 OS=Homo sapiens GN=SSRP1 PE=1 SV=1
Length = 709
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 56/94 (59%), Gaps = 3/94 (3%)
Query: 18 MLKARKAENKPKKEKAGKKKDSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAG 77
M K RK+ KP + K GK D NAPKRP+SAY +++ R+ K P S+ + K
Sbjct: 525 MAKDRKSRKKPVEVKKGK--DPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKA 581
Query: 78 GQKWKSMSEAEKAPYVQKALNKKAEYELALEAYK 111
G+ WK MS+ +K + +KA + + +YE A++ Y+
Sbjct: 582 GEIWKGMSKEKKEEWDRKAEDARRDYEKAMKEYE 615
>sp|Q7S045|NHP6_NEUCR Non-histone chromosomal protein 6 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=nhp-6 PE=3 SV=1
Length = 103
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 21 ARKAENKPKKEKAGKKKDSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQK 80
A K++ K EK KKD NAPKR LSAY F + R++ +E P S +GK G++
Sbjct: 5 AAKSKTTGKVEKRRAKKDPNAPKRGLSAYMFFANEQRENVREENP-GVSFGQVGKILGER 63
Query: 81 WKSMSEAEKAPYVQKALNKKAEYELALEAY 110
WK++S+ ++APY KA K YE +AY
Sbjct: 64 WKALSDKQRAPYEAKAAADKKRYEDEKQAY 93
>sp|Q08943|SSRP1_MOUSE FACT complex subunit SSRP1 OS=Mus musculus GN=Ssrp1 PE=1 SV=2
Length = 708
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 56/96 (58%), Gaps = 3/96 (3%)
Query: 16 ADMLKARKAENKPKKEKAGKKKDSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGK 75
A M K RK+ K + K GK D NAPKRP+SAY +++ R+ K P S+ + K
Sbjct: 523 AKMAKDRKSRRKSSEAKKGK--DPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSK 579
Query: 76 AGGQKWKSMSEAEKAPYVQKALNKKAEYELALEAYK 111
G+ WK MS+ +K + +KA + + EYE A++ Y+
Sbjct: 580 KAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEYE 615
>sp|Q32L31|HMGB3_BOVIN High mobility group protein B3 OS=Bos taurus GN=HMGB3 PE=2 SV=2
Length = 200
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
D NAPKRP S +F+F +FR K + P S+ + K G+ W ++S++EK PY+ KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSANP-GISIGDVAKKLGEMWNNLSDSEKQPYINKAA 147
Query: 98 NKKAEYELALEAYKKQLNDNGA 119
K +YE + YK + +GA
Sbjct: 148 KLKEKYEKDVADYKSKGKFDGA 169
Score = 29.6 bits (65), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 46 LSAYFIFMEDFRKSFKESFPDNK-SVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYE 104
+SAY F++ R+ K+ P+ + A K ++WK+MS EK+ + + A K Y+
Sbjct: 13 MSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYD 72
Query: 105 LALEAY 110
++ Y
Sbjct: 73 REMKDY 78
>sp|O54879|HMGB3_MOUSE High mobility group protein B3 OS=Mus musculus GN=Hmgb3 PE=2 SV=3
Length = 200
Score = 59.7 bits (143), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
D NAPKRP S +F+F +FR K + P S+ + K G+ W ++S+ EK PYV KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDNEKQPYVTKAA 147
Query: 98 NKKAEYELALEAYKKQLNDNGA 119
K +YE + YK + +GA
Sbjct: 148 KLKEKYEKDVADYKSKGKFDGA 169
Score = 30.4 bits (67), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 46 LSAYFIFMEDFRKSFKESFPDNK-SVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYE 104
+SAY F++ R+ K+ P+ + A K ++WK+MS EK+ + + A K Y+
Sbjct: 13 MSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKSKFDEMAKADKVRYD 72
Query: 105 LALEAY 110
++ Y
Sbjct: 73 REMKDY 78
>sp|Q6CVH3|NHP6_KLULA Non-histone chromosomal protein 6 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=NHP6 PE=3 SV=1
Length = 93
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 28 PKKEKAGKKKDSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEA 87
P+K+ KKKD NAPKR LSAY F + R + P + +G+ G+KWK+++E
Sbjct: 4 PRKKTQRKKKDPNAPKRALSAYMFFANENRDIVRAENP-GITFGQVGRILGEKWKALNED 62
Query: 88 EKAPYVQKALNKKAEYELALEAY 110
EKAPY KA K YE E Y
Sbjct: 63 EKAPYEAKAEADKKRYESEKELY 85
>sp|P11633|NHP6B_YEAST Non-histone chromosomal protein 6B OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NHP6B PE=1 SV=3
Length = 99
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 28 PKKEKAGKKKDSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEA 87
PKK +KKD NAPKR LSAY F + R + PD + +G+ G++WK+++
Sbjct: 13 PKKRTTRRKKDPNAPKRGLSAYMFFANENRDIVRSENPDV-TFGQVGRILGERWKALTAE 71
Query: 88 EKAPYVQKALNKKAEYELALEAY 110
EK PY KA K YE E Y
Sbjct: 72 EKQPYESKAQADKKRYESEKELY 94
>sp|O15347|HMGB3_HUMAN High mobility group protein B3 OS=Homo sapiens GN=HMGB3 PE=1 SV=4
Length = 200
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
D NAPKRP S +F+F +FR K + P S+ + K G+ W +++++EK PY+ KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYITKAA 147
Query: 98 NKKAEYELALEAYKKQLNDNGA 119
K +YE + YK + +GA
Sbjct: 148 KLKEKYEKDVADYKSKGKFDGA 169
Score = 29.6 bits (65), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 46 LSAYFIFMEDFRKSFKESFPDNK-SVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYE 104
+SAY F++ R+ K+ P+ + A K ++WK+MS EK+ + + A K Y+
Sbjct: 13 MSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYD 72
Query: 105 LALEAY 110
++ Y
Sbjct: 73 REMKDY 78
>sp|Q04678|SSRP1_CHICK FACT complex subunit SSRP1 OS=Gallus gallus GN=SSRP1 PE=2 SV=2
Length = 706
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 60/103 (58%), Gaps = 5/103 (4%)
Query: 10 AQKKP--HADMLKARKAENKPKKEKAGKKKDSNAPKRPLSAYFIFMEDFRKSFKESFPDN 67
+KKP A ++K RK K + K GK D NAPKRP+SAY +++ R+ K P
Sbjct: 513 GEKKPAKKAKIVKDRKPRKKQVESKKGK--DPNAPKRPMSAYMLWLNANREKIKSDHP-G 569
Query: 68 KSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYELALEAY 110
S+ + K G+ WK+MS+ +K + +KA + K +YE A++ Y
Sbjct: 570 ISITDLSKKAGELWKAMSKEKKEEWDRKAEDAKRDYEKAMKEY 612
>sp|Q4WY33|NHP6_ASPFU Non-histone chromosomal protein 6 OS=Neosartorya fumigata (strain
ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=nhp6
PE=3 SV=1
Length = 104
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 35 KKKDSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQ 94
KKKD NAPKR LSAY F + R +E P S +GK G++WK++S++E+ PY +
Sbjct: 18 KKKDPNAPKRGLSAYMFFANENRDKVREENP-GISFGQVGKMLGERWKALSDSERRPYEE 76
Query: 95 KALNKKAEYE 104
KA K YE
Sbjct: 77 KAAADKKRYE 86
>sp|Q4IQX3|NHP6_GIBZE Non-histone chromosomal protein 6 OS=Gibberella zeae (strain PH-1 /
ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=NHP6 PE=3
SV=1
Length = 101
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 36 KKDSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQK 95
KKD NAPKR LSAY F + R++ +E P S +GK G++WK+++E ++APY K
Sbjct: 18 KKDPNAPKRGLSAYMFFANEQRENVREENP-GISFGQVGKLLGERWKALNEKQRAPYEAK 76
Query: 96 ALNKKAEYELALEAY 110
A K YE +AY
Sbjct: 77 AAADKKRYEDEKQAY 91
>sp|Q32L34|HMGB4_BOVIN High mobility group protein B4 OS=Bos taurus GN=HMGB4 PE=2 SV=1
Length = 194
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 54/104 (51%), Gaps = 1/104 (0%)
Query: 38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
D +AP+RP S++ +F +D K P + SV + KA G+ W + ++ +K PY Q+A
Sbjct: 89 DPHAPRRPPSSFLLFCQDHYAQLKSENP-SWSVVQVAKASGKMWSAKTDVDKQPYEQRAA 147
Query: 98 NKKAEYELALEAYKKQLNDNGAGVSEDSWKSTSEVQSGKSSSSE 141
+A+Y L Y+ Q N + E + E + +S +++
Sbjct: 148 LLRAKYREELSVYRNQFNARKTCLQESATNQCREFEQAESDTTD 191
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 36 KKDSNAPKRPLSAYFIFMEDFRKSFKESFPDNK-SVAAMGKAGGQKWKSMSEAEKAPYVQ 94
K+D PK +S+Y F+ ++R FKE P+ + +KW+S+S+ EKA Y
Sbjct: 3 KRDQLKPKANVSSYIHFLLNYRNKFKEQQPNTYLGFKEFSRKCSEKWRSISKHEKAKYEA 62
Query: 95 KALNKKAEYELALEAY 110
A KA Y+ + Y
Sbjct: 63 LAKLDKARYQEEMMNY 78
>sp|Q4PBZ9|NHP6_USTMA Non-histone chromosomal protein 6 OS=Ustilago maydis (strain 521
/ FGSC 9021) GN=NHP6 PE=3 SV=2
Length = 99
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 36 KKDSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPY 92
KKD +APKRPLSAY F +D R+ K + P+ +G+ G KWK MSEAEK PY
Sbjct: 22 KKDPDAPKRPLSAYMFFSQDQRERVKNANPE-AGFGEVGRLLGAKWKEMSEAEKKPY 77
>sp|P40618|HMGB3_CHICK High mobility group protein B3 OS=Gallus gallus GN=HMGB3 PE=2 SV=2
Length = 202
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
D NAPKRP SA+F+F +FR K + P S+ + K G+ W ++S+ EK PY KA
Sbjct: 89 DPNAPKRPPSAFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDGEKQPYNNKAA 147
Query: 98 NKKAEYELALEAYK 111
K +YE + YK
Sbjct: 148 KLKEKYEKDVADYK 161
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 46 LSAYFIFMEDFRKSFKESFPDNK-SVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYE 104
+SAY F++ R+ K+ P+ + A K ++WK+MS EKA + + A K Y+
Sbjct: 13 MSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKAKFDEMAKADKVRYD 72
Query: 105 LALEAY 110
++ Y
Sbjct: 73 REMKDY 78
>sp|Q9T012|HMG13_ARATH High mobility group B protein 13 OS=Arabidopsis thaliana GN=HMGB13
PE=2 SV=1
Length = 446
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
D PK+P+SAY I+ + R + K +NKSV + K G++WK++SE +KAPY Q A
Sbjct: 242 DPLKPKQPISAYLIYANERRAALK---GENKSVIEVAKMAGEEWKNLSEEKKAPYDQMAK 298
Query: 98 NKKAEYELALEAYKK 112
K Y +E YK+
Sbjct: 299 KNKEIYLQEMEGYKR 313
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 50/95 (52%), Gaps = 16/95 (16%)
Query: 24 AENKPKKEKAGKKKDSNAPKRPLSAYFIFMEDFRKSFKESFP--DNKSVAAMGKAGGQKW 81
A+NK K E D N PK+P S+YF+F +D RKS E P +N +V A KW
Sbjct: 358 AKNKKKNENV----DPNKPKKPTSSYFLFCKDARKSVLEEHPGINNSTVTA---HISLKW 410
Query: 82 KSMSEAEKAPYVQKALNKKAEYELALEAYKKQLND 116
+ E EK Y KA AE +EAYKK++ +
Sbjct: 411 MELGEEEKQVYNSKA----AEL---MEAYKKEVEE 438
>sp|O01683|SSP1B_CAEEL FACT complex subunit ssrp1-B OS=Caenorhabditis elegans GN=hmg-3
PE=3 SV=1
Length = 689
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Query: 38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
D N PKR +AY I+ R S KE D ++ + K G KWKSMS +K + KA
Sbjct: 557 DPNEPKRATTAYIIWFNANRNSMKE---DGDTLGDVAKKAGAKWKSMSADDKKEWNDKAA 613
Query: 98 NKKAEYELALEAYKKQLNDNGAGVSEDSWKST 129
KA YE ++ YKK NG GV + S ST
Sbjct: 614 QDKARYEAEMKEYKK----NGGGVEKASGPST 641
>sp|P87057|NHP6_SCHPO Non-histone chromosomal protein 6 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=nhp6 PE=3 SV=1
Length = 108
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 28 PKKEKAGKKKDSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEA 87
P+ K+ +KKD N PKR +SA+ F + R+ K PD + +G G++WK ++
Sbjct: 2 PRAAKSSRKKDPNTPKRNMSAFMFFSIENREKMKTDNPD-ATFGQLGSLLGKRWKELTST 60
Query: 88 EKAPYVQKALNKKAEYELALEAYKKQL 114
E+ PY +KA K YE + Y +L
Sbjct: 61 EREPYEEKARQDKERYERERKEYDTKL 87
>sp|P36194|HMGB1_CHICK High mobility group protein B1 OS=Gallus gallus GN=HMGB1 PE=2 SV=2
Length = 201
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
D NAPKRP S +F+F +FR K + P S+ + K G+ W ++S+ EK PY KA
Sbjct: 88 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDGEKQPYNNKAA 146
Query: 98 NKKAEYELALEAYK 111
K +YE + YK
Sbjct: 147 KLKEKYEKDVADYK 160
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 34/65 (52%)
Query: 46 LSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYEL 105
+SAY F++ R+ K++ + A K ++WK+MS EKA + + A K Y+
Sbjct: 13 MSAYAFFVQTCREEHKKNPEVPVNFAEFSKKCSERWKTMSSKEKAKFDEMAKADKVRYDR 72
Query: 106 ALEAY 110
++ Y
Sbjct: 73 EMKDY 77
>sp|P0CO24|NHP6_CRYNJ Non-histone chromosomal protein 6 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=NHP6 PE=3 SV=1
Length = 116
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 36 KKDSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQK 95
KKD N PKR LSAY F++D+R+ K P+ + +GK G KW+ M+E EK PY K
Sbjct: 22 KKDPNKPKRALSAYMFFVQDYRERIKTENPE-ATFGDVGKLLGIKWREMNENEKKPYEAK 80
Query: 96 A 96
A
Sbjct: 81 A 81
>sp|P0CO25|NHP6_CRYNB Non-histone chromosomal protein 6 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=NHP6 PE=3
SV=1
Length = 116
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 36 KKDSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQK 95
KKD N PKR LSAY F++D+R+ K P+ + +GK G KW+ M+E EK PY K
Sbjct: 22 KKDPNKPKRALSAYMFFVQDYRERIKTENPE-ATFGDVGKLLGIKWREMNENEKKPYEAK 80
Query: 96 A 96
A
Sbjct: 81 A 81
>sp|Q8WW32|HMGB4_HUMAN High mobility group protein B4 OS=Homo sapiens GN=HMGB4 PE=2 SV=2
Length = 186
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
D P+RP S++ +F +D K P N SV + KA G+ W + ++ EK PY Q+
Sbjct: 89 DPQEPRRPPSSFLLFCQDHYAQLKRENP-NWSVVQVAKATGKMWSTATDLEKHPYEQRVA 147
Query: 98 NKKAEYELALEAYKKQLN 115
+A+Y LE Y+KQ N
Sbjct: 148 LLRAKYFEELELYRKQCN 165
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 42 PKRPLSAYFIFMEDFRKSFKESFPDNK-SVAAMGKAGGQKWKSMSEAEKAPYVQKALNKK 100
PK +S+Y F+ ++R FKE P+ + +KW+S+S+ EKA Y A K
Sbjct: 9 PKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKLDK 68
Query: 101 AEYELALEAY 110
A Y+ + Y
Sbjct: 69 ARYQEEMMNY 78
>sp|Q9SUP7|HMGB6_ARATH High mobility group B protein 6 OS=Arabidopsis thaliana GN=HMGB6
PE=2 SV=1
Length = 456
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
D PK P+SA+ ++ + R + +E +NKSV + K G++WK++S+ +KAPY + A
Sbjct: 251 DPLKPKHPVSAFLVYANERRAALRE---ENKSVVEVAKITGEEWKNLSDKKKAPYEKVAK 307
Query: 98 NKKAEYELALEAYKK 112
K Y A+E YK+
Sbjct: 308 KNKETYLQAMEEYKR 322
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Query: 38 DSNAPKRPLSAYFIFMEDFRKSFKESFP--DNKSVAAMGKAGGQKWKSMSEAEKAPYVQK 95
D N PK+P S+YF+F +D RK E P +N +V A+ KWK +SE EK Y K
Sbjct: 375 DPNKPKKPASSYFLFSKDERKKLTEERPGTNNATVTAL---ISLKWKELSEEEKQVYNGK 431
Query: 96 ALNKKAEYELALEAYKKQ 113
A Y+ +EAY K+
Sbjct: 432 AAKLMEAYKKEVEAYNKK 449
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 10/83 (12%)
Query: 30 KEKAGKKKDSNAP--KRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEA 87
+EKA KKK + P KRP S+Y ++ +D K+ P+ G KWKS+S
Sbjct: 124 QEKANKKKKKDCPETKRPSSSYVLWCKDQWTEVKKENPEA-DFKETSNILGAKWKSLSAE 182
Query: 88 EKAPYVQKALNKKAEYELALEAY 110
+K PY ++ Y++ EAY
Sbjct: 183 DKKPYEER-------YQVEKEAY 198
>sp|P40622|HMG1A_CHITE Mobility group protein 1A OS=Chironomus tentans GN=HMG1A PE=3 SV=1
Length = 114
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 48/81 (59%), Gaps = 3/81 (3%)
Query: 42 PKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKA 101
PKRPLSAY +++ R+S K+ PD K V + K GG+ W+ M +K+ + KA K
Sbjct: 5 PKRPLSAYMLWLNSARESIKKENPDFK-VTEIAKKGGELWRGMK--DKSEWEAKAAKMKE 61
Query: 102 EYELALEAYKKQLNDNGAGVS 122
EYE A++ +++ D +G S
Sbjct: 62 EYEKAMKEFERNGGDKSSGAS 82
>sp|Q4H2R2|SSRP1_CIOIN FACT complex subunit SSRP1 OS=Ciona intestinalis GN=SSRP1 PE=2 SV=1
Length = 704
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 54/94 (57%), Gaps = 6/94 (6%)
Query: 22 RKAENKPKKEKAGKKKDSNAPKRPLSAYFIFMEDFRKSFKESFPDNK--SVAAMGKAGGQ 79
R+ + P K K KKKD NAPKRP SAYF+++ + R FK +NK SV + K G+
Sbjct: 535 RRQKETPGKVKR-KKKDPNAPKRPQSAYFLWLNENRGRFK---AENKGISVTELTKLAGK 590
Query: 80 KWKSMSEAEKAPYVQKALNKKAEYELALEAYKKQ 113
+WK + EK + + K +++ A++ YK Q
Sbjct: 591 EWKKIDPDEKQKFERMYQKSKVKFDAAMKEYKSQ 624
>sp|Q6P8W9|HMGB4_MOUSE High mobility group protein B4 OS=Mus musculus GN=Hmgb4 PE=2 SV=1
Length = 181
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
D AP++P S++ +F D K+ PD +V + KA G+ W + EAEK PY QKA
Sbjct: 89 DPKAPRKPPSSFLLFSRDHYAMLKQENPD-WTVVQVAKAAGKMWSTTDEAEKKPYEQKAA 147
Query: 98 NKKAEYELALEAYKKQ 113
+A+Y EAY+ Q
Sbjct: 148 LMRAKYFEEQEAYRNQ 163
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 37 KDSNAPKRPLSAYFIFMEDFRKSFKESFPDNK-SVAAMGKAGGQKWKSMSEAEKAPYVQK 95
KD PK +S+Y FM +FR FKE P+ + +KW+S+S+ EKA Y
Sbjct: 4 KDQLRPKVNVSSYIHFMLNFRNKFKEQQPNTYLGFKEFSRKCSEKWRSISKHEKAKYEAL 63
Query: 96 ALNKKAEYELALEAY 110
A KA Y+ + Y
Sbjct: 64 AELDKARYQQEMMNY 78
>sp|Q04931|SSRP1_RAT FACT complex subunit SSRP1 OS=Rattus norvegicus GN=Ssrp1 PE=1 SV=2
Length = 709
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97
D NAPKRP+SAY +++ R+ K P S+ + K G+ WK MS+ +K + +KA
Sbjct: 543 DPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKAE 601
Query: 98 NKKAEYELALEAYK 111
+ + EYE A++ Y+
Sbjct: 602 DARREYEKAMKEYE 615
>sp|P12682|HMGB1_PIG High mobility group protein B1 OS=Sus scrofa GN=HMGB1 PE=2 SV=3
Length = 215
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 54/103 (52%), Gaps = 9/103 (8%)
Query: 17 DMLKARKAENK--------PKKEKAGKKKDSNAPKRPLSAYFIFMEDFRKSFKESFPDNK 68
DM KA KA + PK E K KD NAPKRP SA+F+F ++R K P
Sbjct: 62 DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GL 120
Query: 69 SVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYELALEAYK 111
S+ + K G+ W + + +K PY +KA K +YE + AY+
Sbjct: 121 SIGDVAKKLGEMWNNTAADDKHPYEKKAAKLKEKYEKDIAAYR 163
Score = 36.6 bits (83), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 36 KKDSNAPKRPLSAYFIFMEDFRKSFKESFPD-NKSVAAMGKAGGQKWKSMSEAEKAPYVQ 94
K D P+ +S+Y F++ R+ K+ PD + + + K ++WK+MS EK +
Sbjct: 3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 62
Query: 95 KALNKKAEYELALEAY 110
A KA YE ++ Y
Sbjct: 63 MAKADKARYEREMKTY 78
>sp|Q9W602|SSRP1_XENLA FACT complex subunit SSRP1 OS=Xenopus laevis GN=ssrp1 PE=1 SV=1
Length = 693
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 4/93 (4%)
Query: 18 MLKARKAENKPKKEKAGKKKDSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAG 77
++K +K KP+ A K KD APKRP+SAY +++ R+ K P S+ + K
Sbjct: 520 IVKQKKPRKKPE---AKKTKDPGAPKRPMSAYMLWLNASREKIKSENP-GISITDLSKKA 575
Query: 78 GQKWKSMSEAEKAPYVQKALNKKAEYELALEAY 110
G+ WK+MS +K + ++A K +YE A++ Y
Sbjct: 576 GEIWKNMSRDKKEEWDRRAEEAKRDYEKAMKEY 608
>sp|P63159|HMGB1_RAT High mobility group protein B1 OS=Rattus norvegicus GN=Hmgb1 PE=1
SV=2
Length = 215
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 54/103 (52%), Gaps = 9/103 (8%)
Query: 17 DMLKARKAENK--------PKKEKAGKKKDSNAPKRPLSAYFIFMEDFRKSFKESFPDNK 68
DM KA KA + PK E K KD NAPKRP SA+F+F ++R K P
Sbjct: 62 DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GL 120
Query: 69 SVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYELALEAYK 111
S+ + K G+ W + + +K PY +KA K +YE + AY+
Sbjct: 121 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYR 163
Score = 36.6 bits (83), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 36 KKDSNAPKRPLSAYFIFMEDFRKSFKESFPD-NKSVAAMGKAGGQKWKSMSEAEKAPYVQ 94
K D P+ +S+Y F++ R+ K+ PD + + + K ++WK+MS EK +
Sbjct: 3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 62
Query: 95 KALNKKAEYELALEAY 110
A KA YE ++ Y
Sbjct: 63 MAKADKARYEREMKTY 78
>sp|A9RA84|HMGB1_PAPAN High mobility group protein B1 OS=Papio anubis GN=HMGB1 PE=3 SV=1
Length = 215
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 54/103 (52%), Gaps = 9/103 (8%)
Query: 17 DMLKARKAENK--------PKKEKAGKKKDSNAPKRPLSAYFIFMEDFRKSFKESFPDNK 68
DM KA KA + PK E K KD NAPKRP SA+F+F ++R K P
Sbjct: 62 DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GL 120
Query: 69 SVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYELALEAYK 111
S+ + K G+ W + + +K PY +KA K +YE + AY+
Sbjct: 121 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYR 163
Score = 36.6 bits (83), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 36 KKDSNAPKRPLSAYFIFMEDFRKSFKESFPD-NKSVAAMGKAGGQKWKSMSEAEKAPYVQ 94
K D P+ +S+Y F++ R+ K+ PD + + + K ++WK+MS EK +
Sbjct: 3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 62
Query: 95 KALNKKAEYELALEAY 110
A KA YE ++ Y
Sbjct: 63 MAKADKARYEREMKTY 78
>sp|P63158|HMGB1_MOUSE High mobility group protein B1 OS=Mus musculus GN=Hmgb1 PE=1 SV=2
Length = 215
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 54/103 (52%), Gaps = 9/103 (8%)
Query: 17 DMLKARKAENK--------PKKEKAGKKKDSNAPKRPLSAYFIFMEDFRKSFKESFPDNK 68
DM KA KA + PK E K KD NAPKRP SA+F+F ++R K P
Sbjct: 62 DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GL 120
Query: 69 SVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYELALEAYK 111
S+ + K G+ W + + +K PY +KA K +YE + AY+
Sbjct: 121 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYR 163
Score = 36.6 bits (83), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 36 KKDSNAPKRPLSAYFIFMEDFRKSFKESFPD-NKSVAAMGKAGGQKWKSMSEAEKAPYVQ 94
K D P+ +S+Y F++ R+ K+ PD + + + K ++WK+MS EK +
Sbjct: 3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 62
Query: 95 KALNKKAEYELALEAY 110
A KA YE ++ Y
Sbjct: 63 MAKADKARYEREMKTY 78
>sp|Q4R844|HMGB1_MACFA High mobility group protein B1 OS=Macaca fascicularis GN=HMGB1 PE=2
SV=3
Length = 215
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 54/103 (52%), Gaps = 9/103 (8%)
Query: 17 DMLKARKAENK--------PKKEKAGKKKDSNAPKRPLSAYFIFMEDFRKSFKESFPDNK 68
DM KA KA + PK E K KD NAPKRP SA+F+F ++R K P
Sbjct: 62 DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GL 120
Query: 69 SVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYELALEAYK 111
S+ + K G+ W + + +K PY +KA K +YE + AY+
Sbjct: 121 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYR 163
Score = 36.6 bits (83), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 36 KKDSNAPKRPLSAYFIFMEDFRKSFKESFPD-NKSVAAMGKAGGQKWKSMSEAEKAPYVQ 94
K D P+ +S+Y F++ R+ K+ PD + + + K ++WK+MS EK +
Sbjct: 3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 62
Query: 95 KALNKKAEYELALEAY 110
A KA YE ++ Y
Sbjct: 63 MAKADKARYEREMKTY 78
>sp|P09429|HMGB1_HUMAN High mobility group protein B1 OS=Homo sapiens GN=HMGB1 PE=1 SV=3
Length = 215
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 54/103 (52%), Gaps = 9/103 (8%)
Query: 17 DMLKARKAENK--------PKKEKAGKKKDSNAPKRPLSAYFIFMEDFRKSFKESFPDNK 68
DM KA KA + PK E K KD NAPKRP SA+F+F ++R K P
Sbjct: 62 DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GL 120
Query: 69 SVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYELALEAYK 111
S+ + K G+ W + + +K PY +KA K +YE + AY+
Sbjct: 121 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYR 163
Score = 36.6 bits (83), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 36 KKDSNAPKRPLSAYFIFMEDFRKSFKESFPD-NKSVAAMGKAGGQKWKSMSEAEKAPYVQ 94
K D P+ +S+Y F++ R+ K+ PD + + + K ++WK+MS EK +
Sbjct: 3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 62
Query: 95 KALNKKAEYELALEAY 110
A KA YE ++ Y
Sbjct: 63 MAKADKARYEREMKTY 78
>sp|Q08IE6|HMGB1_HORSE High mobility group protein B1 OS=Equus caballus GN=HMGB1 PE=2 SV=3
Length = 215
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 54/103 (52%), Gaps = 9/103 (8%)
Query: 17 DMLKARKAENK--------PKKEKAGKKKDSNAPKRPLSAYFIFMEDFRKSFKESFPDNK 68
DM KA KA + PK E K KD NAPKRP SA+F+F ++R K P
Sbjct: 62 DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GL 120
Query: 69 SVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYELALEAYK 111
S+ + K G+ W + + +K PY +KA K +YE + AY+
Sbjct: 121 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYR 163
Score = 36.6 bits (83), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 36 KKDSNAPKRPLSAYFIFMEDFRKSFKESFPD-NKSVAAMGKAGGQKWKSMSEAEKAPYVQ 94
K D P+ +S+Y F++ R+ K+ PD + + + K ++WK+MS EK +
Sbjct: 3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 62
Query: 95 KALNKKAEYELALEAY 110
A KA YE ++ Y
Sbjct: 63 MAKADKARYEREMKTY 78
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.306 0.121 0.333
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,786,510
Number of Sequences: 539616
Number of extensions: 2263852
Number of successful extensions: 10383
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 311
Number of HSP's that attempted gapping in prelim test: 9480
Number of HSP's gapped (non-prelim): 887
length of query: 168
length of database: 191,569,459
effective HSP length: 109
effective length of query: 59
effective length of database: 132,751,315
effective search space: 7832327585
effective search space used: 7832327585
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 57 (26.6 bits)