Query 044275
Match_columns 168
No_of_seqs 173 out of 1188
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 13:05:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044275.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044275hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00199 high mobility group p 99.9 3.1E-24 6.7E-29 153.4 10.9 85 27-111 8-93 (94)
2 cd01389 MATA_HMG-box MATA_HMG- 99.8 3.1E-20 6.6E-25 127.7 7.7 73 41-114 1-73 (77)
3 PF00505 HMG_box: HMG (high mo 99.8 1.8E-19 3.9E-24 120.3 8.9 69 42-111 1-69 (69)
4 cd01388 SOX-TCF_HMG-box SOX-TC 99.8 1.9E-19 4E-24 122.3 7.6 69 42-111 2-70 (72)
5 cd01390 HMGB-UBF_HMG-box HMGB- 99.8 5E-19 1.1E-23 117.0 8.8 65 42-107 1-65 (66)
6 PF09011 HMG_box_2: HMG-box do 99.8 6.5E-19 1.4E-23 119.9 8.7 72 39-111 1-73 (73)
7 smart00398 HMG high mobility g 99.8 9.1E-19 2E-23 116.5 8.9 70 41-111 1-70 (70)
8 COG5648 NHP6B Chromatin-associ 99.8 3.4E-19 7.3E-24 142.4 7.7 87 30-117 59-145 (211)
9 KOG0381 HMG box-containing pro 99.7 1.6E-17 3.5E-22 117.9 10.6 76 38-114 17-95 (96)
10 cd00084 HMG-box High Mobility 99.7 3.1E-17 6.7E-22 107.8 8.8 65 42-107 1-65 (66)
11 KOG0527 HMG-box transcription 99.7 9.2E-17 2E-21 137.4 6.1 82 35-117 56-137 (331)
12 KOG0526 Nucleosome-binding fac 99.6 3.4E-16 7.5E-21 138.9 8.6 77 31-112 525-601 (615)
13 KOG4715 SWI/SNF-related matrix 99.5 2.7E-14 5.9E-19 120.3 6.9 131 34-165 57-196 (410)
14 KOG3248 Transcription factor T 99.3 1.2E-12 2.5E-17 111.3 5.4 78 41-119 191-268 (421)
15 KOG0528 HMG-box transcription 99.1 4.7E-11 1E-15 105.5 2.5 81 36-117 320-400 (511)
16 PF14887 HMG_box_5: HMG (high 98.4 3E-06 6.6E-11 58.3 7.8 74 41-116 3-76 (85)
17 KOG2746 HMG-box transcription 98.3 5.2E-07 1.1E-11 82.8 4.2 72 34-106 174-247 (683)
18 PF06382 DUF1074: Protein of u 97.1 0.0018 3.8E-08 51.3 6.9 49 46-99 83-131 (183)
19 PF04690 YABBY: YABBY protein; 97.1 0.0012 2.5E-08 52.1 5.5 48 37-85 117-164 (170)
20 COG5648 NHP6B Chromatin-associ 96.7 0.0013 2.7E-08 53.3 2.9 69 39-108 141-209 (211)
21 PF08073 CHDNT: CHDNT (NUC034) 94.7 0.05 1.1E-06 35.2 3.4 38 47-85 14-51 (55)
22 PF04769 MAT_Alpha1: Mating-ty 92.9 0.32 7E-06 39.3 6.0 56 35-97 37-92 (201)
23 PF06244 DUF1014: Protein of u 91.7 0.27 5.8E-06 36.8 3.8 50 37-87 68-117 (122)
24 TIGR03481 HpnM hopanoid biosyn 85.6 2 4.2E-05 34.5 5.2 46 68-113 64-111 (198)
25 PRK15117 ABC transporter perip 80.7 8.2 0.00018 31.2 7.0 46 68-113 68-115 (211)
26 PF05494 Tol_Tol_Ttg2: Toluene 74.1 5.9 0.00013 30.4 4.3 45 68-112 38-84 (170)
27 KOG3223 Uncharacterized conser 72.8 5.1 0.00011 32.4 3.6 49 43-95 166-214 (221)
28 PF13875 DUF4202: Domain of un 59.0 20 0.00043 28.8 4.5 40 47-90 130-169 (185)
29 PHA02608 67 prohead core prote 55.2 26 0.00056 24.2 4.0 27 82-108 11-37 (80)
30 COG2854 Ttg2D ABC-type transpo 53.5 22 0.00047 28.9 4.0 43 75-117 78-121 (202)
31 PF12881 NUT_N: NUT protein N 50.1 45 0.00098 28.9 5.6 45 69-113 251-296 (328)
32 PF15243 ANAPC15: Anaphase-pro 43.9 62 0.0013 23.0 4.7 37 79-121 15-58 (92)
33 PF11304 DUF3106: Protein of u 39.2 1.2E+02 0.0025 21.9 5.6 18 76-93 15-32 (107)
34 PRK09706 transcriptional repre 31.9 1.2E+02 0.0025 22.3 4.8 45 72-116 87-131 (135)
35 PF01352 KRAB: KRAB box; Inte 31.6 33 0.0007 20.5 1.4 27 70-96 3-30 (41)
36 PRK10363 cpxP periplasmic repr 26.6 1.5E+02 0.0033 23.3 4.7 39 71-110 111-149 (166)
37 PF04871 Uso1_p115_C: Uso1 / p 26.5 30 0.00065 26.1 0.8 12 105-116 98-109 (136)
38 PRK12751 cpxP periplasmic stre 26.0 1.4E+02 0.0031 23.2 4.5 31 73-103 119-149 (162)
39 KOG4032 Uncharacterized conser 25.1 81 0.0018 25.2 3.0 29 68-96 85-113 (184)
40 PRK12750 cpxP periplasmic repr 23.0 2.1E+02 0.0046 22.3 5.0 33 75-107 128-160 (170)
41 PF13300 DUF4078: Domain of un 22.5 36 0.00078 24.0 0.5 12 155-166 29-40 (88)
42 PRK10236 hypothetical protein; 22.4 75 0.0016 26.5 2.4 24 72-95 117-140 (237)
43 PF06945 DUF1289: Protein of u 22.3 70 0.0015 19.9 1.7 18 80-97 29-46 (51)
44 PF12650 DUF3784: Domain of un 21.8 62 0.0013 22.4 1.6 17 79-95 24-40 (97)
45 KOG1832 HIV-1 Vpr-binding prot 20.8 43 0.00093 33.5 0.8 29 121-149 1404-1432(1516)
No 1
>PTZ00199 high mobility group protein; Provisional
Probab=99.91 E-value=3.1e-24 Score=153.45 Aligned_cols=85 Identities=42% Similarity=0.640 Sum_probs=77.4
Q ss_pred CcchhcccCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCc-cHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHH
Q 044275 27 KPKKEKAGKKKDSNAPKRPLSAYFIFMEDFRKSFKESFPDNK-SVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYEL 105 (168)
Q Consensus 27 ~~kk~~kk~~kdp~~PKRP~sAy~lF~~e~r~~vk~~~p~~~-~~~ev~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~y~k 105 (168)
..+++++++.+||+.||||+|||+|||.++|..|..+||+.. .+.+|+++||++|+.||+++|.+|+++|..++.+|..
T Consensus 8 ~~~k~~~k~~kdp~~PKrP~sAY~~F~~~~R~~i~~~~P~~~~~~~evsk~ige~Wk~ls~eeK~~y~~~A~~dk~rY~~ 87 (94)
T PTZ00199 8 VLVRKNKRKKKDPNAPKRALSAYMFFAKEKRAEIIAENPELAKDVAAVGKMVGEAWNKLSEEEKAPYEKKAQEDKVRYEK 87 (94)
T ss_pred ccccccCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHCcCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 334455677899999999999999999999999999999942 3899999999999999999999999999999999999
Q ss_pred HHHHHH
Q 044275 106 ALEAYK 111 (168)
Q Consensus 106 e~~~y~ 111 (168)
+|.+|+
T Consensus 88 e~~~Y~ 93 (94)
T PTZ00199 88 EKAEYA 93 (94)
T ss_pred HHHHHh
Confidence 999995
No 2
>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.
Probab=99.82 E-value=3.1e-20 Score=127.65 Aligned_cols=73 Identities=23% Similarity=0.327 Sum_probs=70.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 044275 41 APKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYELALEAYKKQL 114 (168)
Q Consensus 41 ~PKRP~sAy~lF~~e~r~~vk~~~p~~~~~~ev~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~y~ke~~~y~~k~ 114 (168)
.||||+||||||+++.|..|+.+||+ .++.+|+++||.+|+.|++++|++|..+|+.++++|..++++|+...
T Consensus 1 ~~kRP~naf~lf~~~~r~~~~~~~p~-~~~~eisk~~g~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~p~Yky~p 73 (77)
T cd01389 1 KIPRPRNAFILYRQDKHAQLKTENPG-LTNNEISRIIGRMWRSESPEVKAYYKELAEEEKERHAREYPDYKYTP 73 (77)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHCCCCcccC
Confidence 48999999999999999999999999 69999999999999999999999999999999999999999998753
No 3
>PF00505 HMG_box: HMG (high mobility group) box; InterPro: IPR000910 High mobility group (HMG or HMGB) proteins are a family of relatively low molecular weight non-histone components in chromatin. HMG1 (also called HMG-T in fish) and HMG2 are two highly related proteins that bind single-stranded DNA preferentially and unwind double-stranded DNA. Although they have no sequence specificity, they have a high affinity for bent or distorted DNA, and bend linear DNA. HMG1 and HMG2 contain two DNA-binding HMG-box domains (A and B) that show structural and functional differences, and have a long acidic C-terminal domain rich in aspartic and glutamic acid residues. The acidic tail modulates the affinity of the tandem HMG boxes in HMG1 and 2 for a variety of DNA targets. HMG1 and 2 appear to play important architectural roles in the assembly of nucleoprotein complexes in a variety of biological processes, for example V(D)J recombination, the initiation of transcription, and DNA repair []. The profile in this entry describing the HMG-domains is much more general than the signature. In addition to the HMG1 and HMG2 proteins, HMG-domains occur in single or multiple copies in the following protein classes; the SOX family of transcription factors; SRY sex determining region Y protein and related proteins []; LEF1 lymphoid enhancer binding factor 1 []; SSRP recombination signal recognition protein; MTF1 mitochondrial transcription factor 1; UBF1/2 nucleolar transcription factors; Abf2 yeast ARS-binding factor []; and Saccharomyces cerevisiae transcription factors Ixr1, Rox1, Nhp6a, Nhp6b and Spp41.; GO: 0003677 DNA binding; PDB: 1I11_A 1J3C_A 1J3D_A 1WZ6_A 1WGF_A 2D7L_A 1GT0_D 3U2B_C 2CRJ_A 2CS1_A ....
Probab=99.81 E-value=1.8e-19 Score=120.30 Aligned_cols=69 Identities=42% Similarity=0.694 Sum_probs=65.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHH
Q 044275 42 PKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYELALEAYK 111 (168)
Q Consensus 42 PKRP~sAy~lF~~e~r~~vk~~~p~~~~~~ev~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~y~ke~~~y~ 111 (168)
||||+|||+|||.+++..++.+||+ .++.+|+++||.+|+.|++++|.+|..+|..++.+|..++..|+
T Consensus 1 PkrP~~af~lf~~~~~~~~k~~~p~-~~~~~i~~~~~~~W~~l~~~eK~~y~~~a~~~~~~y~~~~~~y~ 69 (69)
T PF00505_consen 1 PKRPPNAFMLFCKEKRAKLKEENPD-LSNKEISKILAQMWKNLSEEEKAPYKEEAEEEKERYEKEMPEYK 69 (69)
T ss_dssp SSSS--HHHHHHHHHHHHHHHHSTT-STHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCHHHHHHHHHHHHHHHHhcc-cccccchhhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8999999999999999999999999 69999999999999999999999999999999999999999995
No 4
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=99.80 E-value=1.9e-19 Score=122.34 Aligned_cols=69 Identities=32% Similarity=0.558 Sum_probs=67.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHH
Q 044275 42 PKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYELALEAYK 111 (168)
Q Consensus 42 PKRP~sAy~lF~~e~r~~vk~~~p~~~~~~ev~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~y~ke~~~y~ 111 (168)
.|||+|||+|||++.|..++.+||+ +++.+|+++||++|+.|++++|++|.++|..++++|.++++.|+
T Consensus 2 iKrP~naf~~F~~~~r~~~~~~~p~-~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~p~y~ 70 (72)
T cd01388 2 IKRPMNAFMLFSKRHRRKVLQEYPL-KENRAISKILGDRWKALSNEEKQPYYEEAKKLKELHMKLYPDYK 70 (72)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHCcCCC
Confidence 5899999999999999999999999 79999999999999999999999999999999999999999986
No 5
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=99.79 E-value=5e-19 Score=117.02 Aligned_cols=65 Identities=48% Similarity=0.779 Sum_probs=63.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHH
Q 044275 42 PKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYELAL 107 (168)
Q Consensus 42 PKRP~sAy~lF~~e~r~~vk~~~p~~~~~~ev~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~y~ke~ 107 (168)
||||+|||++|++++|..++..||+ +++.+|++.||.+|+.||+++|.+|..+|..++.+|..+|
T Consensus 1 Pkrp~saf~~f~~~~r~~~~~~~p~-~~~~~i~~~~~~~W~~ls~~eK~~y~~~a~~~~~~y~~e~ 65 (66)
T cd01390 1 PKRPLSAYFLFSQEQRPKLKKENPD-ASVTEVTKILGEKWKELSEEEKKKYEEKAEKDKERYEKEM 65 (66)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHCcC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 8999999999999999999999999 7999999999999999999999999999999999999886
No 6
>PF09011 HMG_box_2: HMG-box domain; InterPro: IPR015101 This domain is predominantly found in Maelstrom homologue proteins. It has no known function. ; GO: 0005634 nucleus; PDB: 2EQZ_A 1V64_A 2CTO_A 1H5P_A 3TQ6_A 3FGH_A 3TMM_A 1J3X_A 2YRQ_A 1AAB_A ....
Probab=99.79 E-value=6.5e-19 Score=119.94 Aligned_cols=72 Identities=39% Similarity=0.657 Sum_probs=63.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHh-CCCCccHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHH
Q 044275 39 SNAPKRPLSAYFIFMEDFRKSFKES-FPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYELALEAYK 111 (168)
Q Consensus 39 p~~PKRP~sAy~lF~~e~r~~vk~~-~p~~~~~~ev~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~y~ke~~~y~ 111 (168)
|++||||+|||+||+.+.+..++.. ++. ..+.++++.|+..|++||+++|.+|+.+|..++.+|..++..|+
T Consensus 1 p~kpK~~~say~lF~~~~~~~~k~~G~~~-~~~~e~~k~~~~~Wk~Ls~~EK~~Y~~~A~~~k~~y~~e~~~~~ 73 (73)
T PF09011_consen 1 PKKPKRPPSAYNLFMKEMRKEVKEEGGQK-QSFREVMKEISERWKSLSEEEKEPYEERAKEDKERYEREMKEWN 73 (73)
T ss_dssp SSS--SSSSHHHHHHHHHHHHHHHHT-T--SSHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred CcCCCCCCCHHHHHHHHHHHHHHHhcccC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7899999999999999999999888 665 68999999999999999999999999999999999999999995
No 7
>smart00398 HMG high mobility group.
Probab=99.78 E-value=9.1e-19 Score=116.45 Aligned_cols=70 Identities=44% Similarity=0.741 Sum_probs=67.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHH
Q 044275 41 APKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYELALEAYK 111 (168)
Q Consensus 41 ~PKRP~sAy~lF~~e~r~~vk~~~p~~~~~~ev~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~y~ke~~~y~ 111 (168)
+||||+|||+||++++|..+..+||+ .++.+|+++||.+|+.|++++|.+|..+|..++.+|..++..|+
T Consensus 1 ~pkrp~~~y~~f~~~~r~~~~~~~~~-~~~~~i~~~~~~~W~~l~~~ek~~y~~~a~~~~~~y~~~~~~y~ 70 (70)
T smart00398 1 KPKRPMSAFMLFSQENRAKIKAENPD-LSNAEISKKLGERWKLLSEEEKAPYEEKAKKDKERYEEEMPEYK 70 (70)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHHCcC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 58999999999999999999999999 69999999999999999999999999999999999999999884
No 8
>COG5648 NHP6B Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
Probab=99.78 E-value=3.4e-19 Score=142.41 Aligned_cols=87 Identities=37% Similarity=0.687 Sum_probs=82.9
Q ss_pred hhcccCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHH
Q 044275 30 KEKAGKKKDSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYELALEA 109 (168)
Q Consensus 30 k~~kk~~kdp~~PKRP~sAy~lF~~e~r~~vk~~~p~~~~~~ev~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~y~ke~~~ 109 (168)
+..+++.+|||.||||+||||+|+.++|..+...+|. +++.+|+++||++|++|++++|++|...|..++.+|+.++..
T Consensus 59 k~~~r~k~dpN~PKRp~sayf~y~~~~R~ei~~~~p~-l~~~e~~k~~~e~WK~Ltd~eke~y~k~~~~~~erYq~ek~~ 137 (211)
T COG5648 59 KRLVRKKKDPNGPKRPLSAYFLYSAENRDEIRKENPK-LTFGEVGKLLSEKWKELTDEEKEPYYKEANSDRERYQREKEE 137 (211)
T ss_pred HHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHhCCC-CChHHHHHHHHHHHHhccHhhhhhHHHHHhhHHHHHHHHHHh
Confidence 3457788999999999999999999999999999999 799999999999999999999999999999999999999999
Q ss_pred HHhhcCCC
Q 044275 110 YKKQLNDN 117 (168)
Q Consensus 110 y~~k~~~~ 117 (168)
|..+++..
T Consensus 138 y~~k~~~~ 145 (211)
T COG5648 138 YNKKLPNK 145 (211)
T ss_pred hhcccCCC
Confidence 99998875
No 9
>KOG0381 consensus HMG box-containing protein [General function prediction only]
Probab=99.75 E-value=1.6e-17 Score=117.94 Aligned_cols=76 Identities=46% Similarity=0.750 Sum_probs=72.5
Q ss_pred CC--CCCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHH-HHHhhc
Q 044275 38 DS--NAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYELALE-AYKKQL 114 (168)
Q Consensus 38 dp--~~PKRP~sAy~lF~~e~r~~vk~~~p~~~~~~ev~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~y~ke~~-~y~~k~ 114 (168)
+| +.||||++||++|+.++|..++.+||+ +++.+|+++||++|++|++++|.+|+..|..++.+|..+|. .|+..+
T Consensus 17 ~p~~~~pkrp~sa~~~f~~~~~~~~k~~~p~-~~~~~v~k~~g~~W~~l~~~~k~~y~~ka~~~k~~Y~~~~~~~~~~~~ 95 (96)
T KOG0381|consen 17 DPNAQAPKRPLSAFFLFSSEQRSKIKAENPG-LSVGEVAKALGEMWKNLAEEEKQPYEEKASKLKEKYEKELAGEYKASL 95 (96)
T ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 66 599999999999999999999999999 79999999999999999999999999999999999999999 888764
No 10
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=99.72 E-value=3.1e-17 Score=107.84 Aligned_cols=65 Identities=46% Similarity=0.744 Sum_probs=62.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHH
Q 044275 42 PKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYELAL 107 (168)
Q Consensus 42 PKRP~sAy~lF~~e~r~~vk~~~p~~~~~~ev~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~y~ke~ 107 (168)
||||+|||+||++++|..++..||+ .++.+|++.||.+|+.|++++|.+|..+|..++.+|..++
T Consensus 1 pkrp~~af~~f~~~~~~~~~~~~~~-~~~~~i~~~~~~~W~~l~~~~k~~y~~~a~~~~~~y~~~~ 65 (66)
T cd00084 1 PKRPLSAYFLFSQEHRAEVKAENPG-LSVGEISKILGEMWKSLSEEEKKKYEEKAEKDKERYEKEM 65 (66)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHCcC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 7999999999999999999999999 6999999999999999999999999999999999998775
No 11
>KOG0527 consensus HMG-box transcription factor [Transcription]
Probab=99.66 E-value=9.2e-17 Score=137.43 Aligned_cols=82 Identities=26% Similarity=0.464 Sum_probs=76.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 044275 35 KKKDSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYELALEAYKKQL 114 (168)
Q Consensus 35 ~~kdp~~PKRP~sAy~lF~~e~r~~vk~~~p~~~~~~ev~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~y~ke~~~y~~k~ 114 (168)
.+......||||||||+|++..|.+|..++|. ..+.||+|.||.+|+.|+++||.+|++.|++++..|++++.+|+.+-
T Consensus 56 ~k~~~~hIKRPMNAFMVWSq~~RRkma~qnP~-mHNSEISK~LG~~WK~Lse~EKrPFi~EAeRLR~~HmkehPdYKYRP 134 (331)
T KOG0527|consen 56 DKTSTDRIKRPMNAFMVWSQGQRRKLAKQNPK-MHNSEISKRLGAEWKLLSEEEKRPFVDEAERLRAQHMKEYPDYKYRP 134 (331)
T ss_pred CCCCccccCCCcchhhhhhHHHHHHHHHhCcc-hhhHHHHHHHHHHHhhcCHhhhccHHHHHHHHHHHHHHhCCCccccc
Confidence 45566788999999999999999999999999 69999999999999999999999999999999999999999999886
Q ss_pred CCC
Q 044275 115 NDN 117 (168)
Q Consensus 115 ~~~ 117 (168)
...
T Consensus 135 RRK 137 (331)
T KOG0527|consen 135 RRK 137 (331)
T ss_pred ccc
Confidence 553
No 12
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=99.65 E-value=3.4e-16 Score=138.93 Aligned_cols=77 Identities=44% Similarity=0.678 Sum_probs=73.2
Q ss_pred hcccCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 044275 31 EKAGKKKDSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYELALEAY 110 (168)
Q Consensus 31 ~~kk~~kdp~~PKRP~sAy~lF~~e~r~~vk~~~p~~~~~~ev~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~y~ke~~~y 110 (168)
++.|+++|||+||||+||||||++..|..|+.+ + .++++|++.+|++|+.|+. |.+|+++|+.++++|+.+|.+|
T Consensus 525 k~~kk~kdpnapkra~sa~m~w~~~~r~~ik~d--g-i~~~dv~kk~g~~wk~ms~--k~~we~ka~~dk~ry~~em~~y 599 (615)
T KOG0526|consen 525 KKGKKKKDPNAPKRATSAYMLWLNASRESIKED--G-ISVGDVAKKAGEKWKQMSA--KEEWEDKAAVDKQRYEDEMKEY 599 (615)
T ss_pred cCcccCCCCCCCccchhHHHHHHHhhhhhHhhc--C-chHHHHHHHHhHHHhhhcc--cchhhHHHHHHHHHHHHHHHhh
Confidence 567888999999999999999999999999987 5 7999999999999999999 9999999999999999999999
Q ss_pred Hh
Q 044275 111 KK 112 (168)
Q Consensus 111 ~~ 112 (168)
+.
T Consensus 600 k~ 601 (615)
T KOG0526|consen 600 KN 601 (615)
T ss_pred cC
Confidence 93
No 13
>KOG4715 consensus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Chromatin structure and dynamics]
Probab=99.51 E-value=2.7e-14 Score=120.31 Aligned_cols=131 Identities=22% Similarity=0.381 Sum_probs=103.9
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 044275 34 GKKKDSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYELALEAYKKQ 113 (168)
Q Consensus 34 k~~kdp~~PKRP~sAy~lF~~e~r~~vk~~~p~~~~~~ev~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~y~ke~~~y~~k 113 (168)
...+.|.+|-+|+-+||.|++..+.+|+..||+ +.+.+|.++||.+|..|++++|..|...++..+..|.+.|.+|...
T Consensus 57 t~pkpPkppekpl~pymrySrkvWd~VkA~nPe-~kLWeiGK~Ig~mW~dLpd~EK~ey~~EYeaEKieY~~smkayh~s 135 (410)
T KOG4715|consen 57 TRPKPPKPPEKPLMPYMRYSRKVWDQVKASNPE-LKLWEIGKIIGGMWLDLPDEEKQEYLNEYEAEKIEYNESMKAYHNS 135 (410)
T ss_pred cCCCCCCCCCcccchhhHHhhhhhhhhhccCcc-hHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 455678889999999999999999999999999 7999999999999999999999999999999999999999999775
Q ss_pred cCCC------CC---CCCcccccccccccCCCCCCcccchhhhhhhccccccceeeeeecc
Q 044275 114 LNDN------GA---GVSEDSWKSTSEVQSGKSSSSEINDEAEQEFSSQVSSYFMGFYCFS 165 (168)
Q Consensus 114 ~~~~------~~---~~~e~s~kskse~~~~d~~~de~eddded~~~~~~~~~~~~~~~~~ 165 (168)
.... .. +-+..+....|-.+-..---+....+|+|+.++++|-.|+++++|-
T Consensus 136 p~y~ayinaKsra~a~le~~sr~~~sr~~~ge~~~~IQPaeDeDD~ddg~stkhla~arf~ 196 (410)
T KOG4715|consen 136 PAYLAYINAKSRAEAALEEESRQRQSRMEKGEPYMSIQPAEDEDDYDDGFSTKHLATARFQ 196 (410)
T ss_pred chHHHHhhhhhhhhhhhccccccccchhhcCCcceecccccCccccccccchhhhhhhhhh
Confidence 4321 11 1233343444443333333445555677778889999999999984
No 14
>KOG3248 consensus Transcription factor TCF-4 [Transcription]
Probab=99.34 E-value=1.2e-12 Score=111.33 Aligned_cols=78 Identities=22% Similarity=0.377 Sum_probs=72.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 044275 41 APKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYELALEAYKKQLNDNGA 119 (168)
Q Consensus 41 ~PKRP~sAy~lF~~e~r~~vk~~~p~~~~~~ev~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~y~ke~~~y~~k~~~~~~ 119 (168)
..|+|+||||||++|.|..|..++-- +...+|.++||++|..||.+|.++|.++|.++++-|...+..|.++...+++
T Consensus 191 hiKKPLNAFmlyMKEmRa~vvaEctl-KeSAaiNqiLGrRWH~LSrEEQAKYyElArKerqlH~qlYP~WSARdNYgKK 268 (421)
T KOG3248|consen 191 HIKKPLNAFMLYMKEMRAKVVAECTL-KESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKK 268 (421)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence 56899999999999999999999976 6889999999999999999999999999999999999999999998888644
No 15
>KOG0528 consensus HMG-box transcription factor SOX5 [Transcription]
Probab=99.08 E-value=4.7e-11 Score=105.45 Aligned_cols=81 Identities=25% Similarity=0.456 Sum_probs=73.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 044275 36 KKDSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYELALEAYKKQLN 115 (168)
Q Consensus 36 ~kdp~~PKRP~sAy~lF~~e~r~~vk~~~p~~~~~~ev~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~y~ke~~~y~~k~~ 115 (168)
...+..-||||||||+|.++.|-+|...+|++ .+.+|+++||.+|+.|+..||++|++.-.++-..|...++.|+.+-.
T Consensus 320 ~ss~PHIKRPMNAFMVWAkDERRKILqA~PDM-HNSnISKILGSRWKaMSN~eKQPYYEEQaRLSk~HlEk~PdYrYkPR 398 (511)
T KOG0528|consen 320 ASSEPHIKRPMNAFMVWAKDERRKILQAFPDM-HNSNISKILGSRWKAMSNTEKQPYYEEQARLSKLHLEKYPDYRYKPR 398 (511)
T ss_pred CCCCccccCCcchhhcccchhhhhhhhcCccc-cccchhHHhcccccccccccccchHHHHHHHHHhhhccCcccccCCC
Confidence 33444569999999999999999999999995 89999999999999999999999999999999999999999998876
Q ss_pred CC
Q 044275 116 DN 117 (168)
Q Consensus 116 ~~ 117 (168)
+.
T Consensus 399 PK 400 (511)
T KOG0528|consen 399 PK 400 (511)
T ss_pred CC
Confidence 64
No 16
>PF14887 HMG_box_5: HMG (high mobility group) box 5; PDB: 1L8Y_A 1L8Z_A 2HDZ_A.
Probab=98.36 E-value=3e-06 Score=58.27 Aligned_cols=74 Identities=24% Similarity=0.389 Sum_probs=61.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 044275 41 APKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYELALEAYKKQLND 116 (168)
Q Consensus 41 ~PKRP~sAy~lF~~e~r~~vk~~~p~~~~~~ev~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~y~ke~~~y~~k~~~ 116 (168)
.|..|.+|-.||.+.....+.+.++. ....+ .+.+...|.+|++.+|-+|..+|.++..+|+.+|.+|+.-...
T Consensus 3 lPE~PKt~qe~Wqq~vi~dYla~~~~-dr~K~-~kam~~~W~~me~Kekl~WIkKA~EdqKrYE~el~e~r~~~~~ 76 (85)
T PF14887_consen 3 LPETPKTAQEIWQQSVIGDYLAKFRN-DRKKA-LKAMEAQWSQMEKKEKLKWIKKAAEDQKRYERELREMRSAPAD 76 (85)
T ss_dssp -S----THHHHHHHHHHHHHHHHTTS-THHHH-HHHHHHHHHTTGGGHHHHHHHHHHHHHHHHHHHHHCCS-CCCT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhhH-hHHHH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 47788899999999999999999998 45555 5589999999999999999999999999999999999987665
No 17
>KOG2746 consensus HMG-box transcription factor Capicua and related proteins [Transcription]
Probab=98.31 E-value=5.2e-07 Score=82.78 Aligned_cols=72 Identities=25% Similarity=0.433 Sum_probs=65.5
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHHH--HHHHHhCCCCccHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHH
Q 044275 34 GKKKDSNAPKRPLSAYFIFMEDFR--KSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYELA 106 (168)
Q Consensus 34 k~~kdp~~PKRP~sAy~lF~~e~r--~~vk~~~p~~~~~~ev~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~y~ke 106 (168)
..+.+...-+||||||+||++.+| ..+...||+ ..+..|+++||+.|-.|-+.||+.|.++|.+.+..|.+.
T Consensus 174 pnkr~k~HirrPMnaf~ifskrhr~~g~vhq~~pn-~DNrtIskiLgewWytL~~~Ekq~yhdLa~Qvk~Ahfka 247 (683)
T KOG2746|consen 174 PNKRDKDHIRRPMNAFHIFSKRHRGEGRVHQRHPN-QDNRTISKILGEWWYTLGPNEKQKYHDLAFQVKEAHFKA 247 (683)
T ss_pred CCcCcchhhhhhhHHHHHHHhhcCCccchhccCcc-ccchhHHHHHhhhHhhhCchhhhhHHHHHHHHHHHHhhh
Confidence 344555667899999999999999 889999999 799999999999999999999999999999999999876
No 18
>PF06382 DUF1074: Protein of unknown function (DUF1074); InterPro: IPR024460 This family consists of several proteins which appear to be specific to Insecta. The function of this family is unknown.
Probab=97.15 E-value=0.0018 Score=51.26 Aligned_cols=49 Identities=29% Similarity=0.434 Sum_probs=42.9
Q ss_pred CCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCChhhhhHHHHHHHHH
Q 044275 46 LSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNK 99 (168)
Q Consensus 46 ~sAy~lF~~e~r~~vk~~~p~~~~~~ev~k~lg~~Wk~ls~~eK~~Y~~~A~~~ 99 (168)
-+||+-|+.++|. .|.+ +...++....+..|..|++.+|..|..++...
T Consensus 83 nnaYLNFLReFRr----kh~~-L~p~dlI~~AAraW~rLSe~eK~rYrr~~~~~ 131 (183)
T PF06382_consen 83 NNAYLNFLREFRR----KHCG-LSPQDLIQRAARAWCRLSEAEKNRYRRMAPSV 131 (183)
T ss_pred chHHHHHHHHHHH----HccC-CCHHHHHHHHHHHHHhCCHHHHHHHHhhcchh
Confidence 4789999999987 4667 79999999999999999999999999876544
No 19
>PF04690 YABBY: YABBY protein; InterPro: IPR006780 YABBY proteins are a group of plant-specific transcription factors involved in the specification of abaxial polarity in lateral organs such as leaves and floral organs [, ].
Probab=97.10 E-value=0.0012 Score=52.12 Aligned_cols=48 Identities=27% Similarity=0.338 Sum_probs=42.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCC
Q 044275 37 KDSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMS 85 (168)
Q Consensus 37 kdp~~PKRP~sAy~lF~~e~r~~vk~~~p~~~~~~ev~k~lg~~Wk~ls 85 (168)
+.|.+-.|-+|||..|+++.-..|+..+|+ ++..|.....+..|...+
T Consensus 117 kPPEKRqR~psaYn~f~k~ei~rik~~~p~-ishkeaFs~aAknW~h~p 164 (170)
T PF04690_consen 117 KPPEKRQRVPSAYNRFMKEEIQRIKAENPD-ISHKEAFSAAAKNWAHFP 164 (170)
T ss_pred CCccccCCCchhHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHhhhhCc
Confidence 334445677899999999999999999999 699999999999998765
No 20
>COG5648 NHP6B Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
Probab=96.71 E-value=0.0013 Score=53.31 Aligned_cols=69 Identities=22% Similarity=0.360 Sum_probs=61.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHH
Q 044275 39 SNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYELALE 108 (168)
Q Consensus 39 p~~PKRP~sAy~lF~~e~r~~vk~~~p~~~~~~ev~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~y~ke~~ 108 (168)
..+|+.|..+|.-+-.+.|+.+...+|+ .+..+++++++..|.+|++.-|.+|...+.+++..|...++
T Consensus 141 k~~~~~~~~~~~e~~~~~r~~~~~~~~~-~~~~e~~k~~~~~w~el~~skK~~~~~~~Kk~k~~~~~~~~ 209 (211)
T COG5648 141 KLPNKAPIGPFIENEPKIRPKVEGPSPD-KALVEETKIISKAWSELDESKKKKYIDKYKKLKEEYDSFYP 209 (211)
T ss_pred ccCCCCCCchhhhccHHhccccCCCCcc-hhhhHHhhhhhhhhhhhChhhhhHHHHHHHHHHHHHhhhcc
Confidence 4467888888999999999999999999 69999999999999999999999999999999888876553
No 21
>PF08073 CHDNT: CHDNT (NUC034) domain; InterPro: IPR012958 The CHD N-terminal domain is found in PHD/RING fingers and chromo domain-associated helicases [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0008270 zinc ion binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.65 E-value=0.05 Score=35.20 Aligned_cols=38 Identities=16% Similarity=0.344 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCC
Q 044275 47 SAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMS 85 (168)
Q Consensus 47 sAy~lF~~e~r~~vk~~~p~~~~~~ev~k~lg~~Wk~ls 85 (168)
+.|-+|.+-.|+.|...||+ ..+..+...++..|++-+
T Consensus 14 t~yK~Fsq~vRP~l~~~NPk-~~~sKl~~l~~AKwrEF~ 51 (55)
T PF08073_consen 14 TNYKAFSQHVRPLLAKANPK-APMSKLMMLLQAKWREFQ 51 (55)
T ss_pred HHHHHHHHHHHHHHHHHCCC-CcHHHHHHHHHHHHHHHH
Confidence 56889999999999999999 699999999999998644
No 22
>PF04769 MAT_Alpha1: Mating-type protein MAT alpha 1; InterPro: IPR006856 This family includes Saccharomyces cerevisiae (Baker's yeast) mating type protein alpha 1 (P01365 from SWISSPROT). MAT alpha 1 is a transcription activator that activates mating-type alpha-specific genes with the help of the MADS-box containing MCM1 transcription factor, which together bind cooperatively to PQ elements upstream of alpha-specific genes. The MCM1-MATalpha1 complex is required for the proper DNA-bending that is needed for transcriptional activation []. Alpha 1 interacts in vivo with STE12, linking expression of alpha-specific genes to the alpha-pheromone (IPR006742 from INTERPRO) response pathway [].; GO: 0000772 mating pheromone activity, 0003677 DNA binding, 0045895 positive regulation of transcription, mating-type specific, 0005634 nucleus
Probab=92.90 E-value=0.32 Score=39.32 Aligned_cols=56 Identities=20% Similarity=0.356 Sum_probs=40.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCChhhhhHHHHHHH
Q 044275 35 KKKDSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKAL 97 (168)
Q Consensus 35 ~~kdp~~PKRP~sAy~lF~~e~r~~vk~~~p~~~~~~ev~k~lg~~Wk~ls~~eK~~Y~~~A~ 97 (168)
++..+..++||+|+||+|..=+- .-.|+ ....+++..|+..|..=+- |..|.-+|.
T Consensus 37 ~~~~~~~~kr~lN~Fm~FRsyy~----~~~~~-~~Qk~~S~~l~~lW~~dp~--k~~W~l~ak 92 (201)
T PF04769_consen 37 RKRSPEKAKRPLNGFMAFRSYYS----PIFPP-LPQKELSGILTKLWEKDPF--KNKWSLMAK 92 (201)
T ss_pred ccccccccccchhHHHHHHHHHH----hhcCC-cCHHHHHHHHHHHHhCCcc--HhHHHHHhh
Confidence 44556678999999999987666 34455 5678999999999997443 445554443
No 23
>PF06244 DUF1014: Protein of unknown function (DUF1014); InterPro: IPR010422 This family consists of several hypothetical eukaryotic proteins of unknown function.
Probab=91.67 E-value=0.27 Score=36.83 Aligned_cols=50 Identities=22% Similarity=0.281 Sum_probs=42.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCChh
Q 044275 37 KDSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEA 87 (168)
Q Consensus 37 kdp~~PKRP~sAy~lF~~e~r~~vk~~~p~~~~~~ev~k~lg~~Wk~ls~~ 87 (168)
.|..|-+|-.-||.-|.....+.++.++|+ +-.+++-..|-..|..-|+.
T Consensus 68 ~drHPErR~KAAy~afeE~~Lp~lK~E~Pg-LrlsQ~kq~l~K~w~KSPeN 117 (122)
T PF06244_consen 68 IDRHPERRMKAAYKAFEERRLPELKEENPG-LRLSQYKQMLWKEWQKSPEN 117 (122)
T ss_pred CCCCcchhHHHHHHHHHHHHhHHHHhhCCC-chHHHHHHHHHHHHhcCCCC
Confidence 344444555689999999999999999999 79999999999999887753
No 24
>TIGR03481 HpnM hopanoid biosynthesis associated membrane protein HpnM. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins are members of the pfam05494 family of putative transporters known as "toluene tolerance protein Ttg2D", although it is unlikely that the members included here have anything to do with toluene per-se.
Probab=85.58 E-value=2 Score=34.46 Aligned_cols=46 Identities=20% Similarity=0.418 Sum_probs=39.3
Q ss_pred ccHHHHHH-HHHhhhcCCChhhhhHHHHHHHH-HHHHHHHHHHHHHhh
Q 044275 68 KSVAAMGK-AGGQKWKSMSEAEKAPYVQKALN-KKAEYELALEAYKKQ 113 (168)
Q Consensus 68 ~~~~ev~k-~lg~~Wk~ls~~eK~~Y~~~A~~-~k~~y~ke~~~y~~k 113 (168)
..+..|++ .||..|+.+++++|+.|...... ....|-..+..|...
T Consensus 64 ~Df~~mar~vLG~~W~~~s~~Qr~~F~~~F~~~l~~tY~~~l~~y~~~ 111 (198)
T TIGR03481 64 FDLPAMARLTLGSSWTSLSPEQRRRFIGAFRELSIATYASQFKSYAGE 111 (198)
T ss_pred CCHHHHHHHHhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 46777776 78999999999999999998887 778899999998764
No 25
>PRK15117 ABC transporter periplasmic binding protein MlaC; Provisional
Probab=80.69 E-value=8.2 Score=31.17 Aligned_cols=46 Identities=26% Similarity=0.345 Sum_probs=38.0
Q ss_pred ccHHHHHH-HHHhhhcCCChhhhhHHHHHHHH-HHHHHHHHHHHHHhh
Q 044275 68 KSVAAMGK-AGGQKWKSMSEAEKAPYVQKALN-KKAEYELALEAYKKQ 113 (168)
Q Consensus 68 ~~~~ev~k-~lg~~Wk~ls~~eK~~Y~~~A~~-~k~~y~ke~~~y~~k 113 (168)
..+..+++ .||..|+.+++++|..|...... ...-|-..+..|...
T Consensus 68 ~Df~~~s~~vLG~~wr~as~eQr~~F~~~F~~~Lv~tYa~~l~~y~~q 115 (211)
T PRK15117 68 VQVKYAGALVLGRYYKDATPAQREAYFAAFREYLKQAYGQALAMYHGQ 115 (211)
T ss_pred CCHHHHHHHHhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 36777765 78999999999999999987766 567899999999764
No 26
>PF05494 Tol_Tol_Ttg2: Toluene tolerance, Ttg2 ; InterPro: IPR008869 Toluene tolerance is mediated by increased cell membrane rigidity resulting from changes in fatty acid and phospholipid compositions, exclusion of toluene from the cell membrane, and removal of intracellular toluene by degradation []. Many proteins are involved in these processes. This family is a transporter which shows similarity to ABC transporters [].; PDB: 2QGU_A.
Probab=74.12 E-value=5.9 Score=30.41 Aligned_cols=45 Identities=20% Similarity=0.370 Sum_probs=33.6
Q ss_pred ccHHHHHH-HHHhhhcCCChhhhhHHHHHHHH-HHHHHHHHHHHHHh
Q 044275 68 KSVAAMGK-AGGQKWKSMSEAEKAPYVQKALN-KKAEYELALEAYKK 112 (168)
Q Consensus 68 ~~~~ev~k-~lg~~Wk~ls~~eK~~Y~~~A~~-~k~~y~ke~~~y~~ 112 (168)
..+..|++ .||..|+.|++++++.|...... ....|-..+..|..
T Consensus 38 ~D~~~~ar~~LG~~w~~~s~~q~~~F~~~f~~~l~~~Y~~~l~~y~~ 84 (170)
T PF05494_consen 38 FDFERMARRVLGRYWRKASPAQRQRFVEAFKQLLVRTYAKRLDEYSG 84 (170)
T ss_dssp B-HHHHHHHHHGGGTTTS-HHHHHHHHHHHHHHHHHHHHHHHHT-SS
T ss_pred CCHHHHHHHHHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 45666665 57899999999999999986665 56778888888875
No 27
>KOG3223 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.82 E-value=5.1 Score=32.41 Aligned_cols=49 Identities=20% Similarity=0.326 Sum_probs=41.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCChhhhhHHHHH
Q 044275 43 KRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQK 95 (168)
Q Consensus 43 KRP~sAy~lF~~e~r~~vk~~~p~~~~~~ev~k~lg~~Wk~ls~~eK~~Y~~~ 95 (168)
+|=.-||.-|-....+.|+.+||+ +.++++-.+|-..|..-|+. ||.+.
T Consensus 166 kRmrAA~~afEe~~LPrLK~e~P~-lrlsQ~Kqll~Kew~KsPDN---P~Nq~ 214 (221)
T KOG3223|consen 166 KRMRAAFKAFEEARLPRLKKENPG-LRLSQYKQLLKKEWQKSPDN---PFNQA 214 (221)
T ss_pred HHHHHHHHHHHHhhchhhhhcCCC-ccHHHHHHHHHHHHhhCCCC---hhhHH
Confidence 555678999999999999999999 79999999999999988875 45443
No 28
>PF13875 DUF4202: Domain of unknown function (DUF4202)
Probab=59.04 E-value=20 Score=28.75 Aligned_cols=40 Identities=20% Similarity=0.388 Sum_probs=33.5
Q ss_pred CHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCChhhhh
Q 044275 47 SAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKA 90 (168)
Q Consensus 47 sAy~lF~~e~r~~vk~~~p~~~~~~ev~k~lg~~Wk~ls~~eK~ 90 (168)
-+.++|+..+...+...| .-..+..+|...|+.||+.-++
T Consensus 130 vacLVFL~~~f~~F~~~~----deeK~v~Il~KTw~KMS~~g~~ 169 (185)
T PF13875_consen 130 VACLVFLEYYFEDFAAKH----DEEKIVDILRKTWRKMSERGHE 169 (185)
T ss_pred hHHHHhHHHHHHHHHhcC----CHHHHHHHHHHHHHHCCHHHHH
Confidence 358899999999998888 3457888899999999998764
No 29
>PHA02608 67 prohead core protein; Provisional
Probab=55.18 E-value=26 Score=24.24 Aligned_cols=27 Identities=19% Similarity=-0.029 Sum_probs=16.3
Q ss_pred cCCChhhhhHHHHHHHHHHHHHHHHHH
Q 044275 82 KSMSEAEKAPYVQKALNKKAEYELALE 108 (168)
Q Consensus 82 k~ls~~eK~~Y~~~A~~~k~~y~ke~~ 108 (168)
+.|-...|..|..++.+--..++....
T Consensus 11 ~DLV~akK~F~~~Me~rt~~li~e~k~ 37 (80)
T PHA02608 11 GDLVEAKKEFASIMEARTEALIEEEKV 37 (80)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556677777777765555554433
No 30
>COG2854 Ttg2D ABC-type transport system involved in resistance to organic solvents, auxiliary component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=53.55 E-value=22 Score=28.92 Aligned_cols=43 Identities=21% Similarity=0.237 Sum_probs=36.4
Q ss_pred HHHHhhhcCCChhhhhHHHHHHHH-HHHHHHHHHHHHHhhcCCC
Q 044275 75 KAGGQKWKSMSEAEKAPYVQKALN-KKAEYELALEAYKKQLNDN 117 (168)
Q Consensus 75 k~lg~~Wk~ls~~eK~~Y~~~A~~-~k~~y~ke~~~y~~k~~~~ 117 (168)
..||.-|+.+|+++++.|...... ....|-..+..|+.+....
T Consensus 78 ~vLGk~~k~aspeQ~~~F~~aF~~yl~q~Y~~aL~~Y~~q~~~v 121 (202)
T COG2854 78 LVLGKYYKTASPEQRQAFFKAFRTYLEQTYGQALLDYKGQTLKV 121 (202)
T ss_pred HHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcee
Confidence 458999999999999999987666 6678999999999886653
No 31
>PF12881 NUT_N: NUT protein N terminus; InterPro: IPR024309 This domain is found in the N-terminal region of Nuclear Testis (NUT) proteins. It is also found in FAM22, which are a family of uncharacterised mammalian proteins.
Probab=50.06 E-value=45 Score=28.90 Aligned_cols=45 Identities=18% Similarity=0.137 Sum_probs=31.2
Q ss_pred cHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHH-HHHHHHHHHHhh
Q 044275 69 SVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKA-EYELALEAYKKQ 113 (168)
Q Consensus 69 ~~~ev~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~-~y~ke~~~y~~k 113 (168)
++.|-..+.-+.|...|.-+|-.|+++|++=++ +-+++|..-+-+
T Consensus 251 tlEeGl~ra~qEW~~~SnfdRmifyemaekFmEFEaeEEmq~q~lq 296 (328)
T PF12881_consen 251 TLEEGLWRAVQEWQHTSNFDRMIFYEMAEKFMEFEAEEEMQIQKLQ 296 (328)
T ss_pred cHHHHHHHHHHHhhccccccHHHHHHHHHHHccCCcHHHHHHHHHH
Confidence 556666666789999999999999999987543 122444444443
No 32
>PF15243 ANAPC15: Anaphase-promoting complex subunit 15
Probab=43.88 E-value=62 Score=22.99 Aligned_cols=37 Identities=19% Similarity=0.310 Sum_probs=17.5
Q ss_pred hhhcCCChhhhhHHHHHHHHHHHHHHHHHHHH-------HhhcCCCCCCC
Q 044275 79 QKWKSMSEAEKAPYVQKALNKKAEYELALEAY-------KKQLNDNGAGV 121 (168)
Q Consensus 79 ~~Wk~ls~~eK~~Y~~~A~~~k~~y~ke~~~y-------~~k~~~~~~~~ 121 (168)
..|=+|. .++...++.. +++.++.+| ...+.+.++..
T Consensus 15 ~lwf~~d----~pc~dE~EL~--~~Eq~~q~Wl~sI~ekd~nlvPIGK~~ 58 (92)
T PF15243_consen 15 PLWFNLD----RPCVDETELQ--QQEQQHQAWLQSIAEKDNNLVPIGKPA 58 (92)
T ss_pred cccccCC----CccchHHHHH--HHHHHHHHHHHHHHHhccCcCccCCCC
Confidence 4577775 3444433322 444444454 33455555543
No 33
>PF11304 DUF3106: Protein of unknown function (DUF3106); InterPro: IPR021455 Some members in this family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently no function is known.
Probab=39.22 E-value=1.2e+02 Score=21.86 Aligned_cols=18 Identities=11% Similarity=0.553 Sum_probs=7.6
Q ss_pred HHHhhhcCCChhhhhHHH
Q 044275 76 AGGQKWKSMSEAEKAPYV 93 (168)
Q Consensus 76 ~lg~~Wk~ls~~eK~~Y~ 93 (168)
-|...|..|++..+..+.
T Consensus 15 pl~~~W~~l~~~qr~k~l 32 (107)
T PF11304_consen 15 PLAERWNSLPPEQRRKWL 32 (107)
T ss_pred HHHHHHhcCCHHHHHHHH
Confidence 344444444444444333
No 34
>PRK09706 transcriptional repressor DicA; Reviewed
Probab=31.93 E-value=1.2e+02 Score=22.25 Aligned_cols=45 Identities=11% Similarity=0.120 Sum_probs=38.6
Q ss_pred HHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 044275 72 AMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYELALEAYKKQLND 116 (168)
Q Consensus 72 ev~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~y~ke~~~y~~k~~~ 116 (168)
.-...|-..|+.|+++++.............|.+-+.+|-.+...
T Consensus 87 ~~~~~ll~~~~~L~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 131 (135)
T PRK09706 87 EDQKELLELFDALPESEQDAQLSEMRARVENFNKLFEELLKARKR 131 (135)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345678889999999999999999999999999999999776543
No 35
>PF01352 KRAB: KRAB box; InterPro: IPR001909 The Krueppel-associated box (KRAB) is a domain of around 75 amino acids that is found in the N-terminal part of about one third of eukaryotic Krueppel-type C2H2 zinc finger proteins (ZFPs) []. It is enriched in charged amino acids and can be divided into subregions A and B, which are predicted to fold into two amphipathic alpha-helices. The KRAB A and B boxes can be separated by variable spacer segments and many KRAB proteins contain only the A box []. The functions currently known for members of the KRAB-containing protein family include transcriptional repression of RNA polymerase I, II, and III promoters, binding and splicing of RNA, and control of nucleolus function. The KRAB domain functions as a transcriptional repressor when tethered to the template DNA by a DNA-binding domain. A sequence of 45 amino acids in the KRAB A subdomain has been shown to be necessary and sufficient for transcriptional repression. The B box does not repress by itself but does potentiate the repression exerted by the KRAB A subdomain [, ]. Gene silencing requires the binding of the KRAB domain to the RING-B box-coiled coil (RBCC) domain of the KAP-1/TIF1-beta corepressor. As KAP-1 binds to the heterochromatin proteins HP1, it has been proposed that the KRAB-ZFP-bound target gene could be silenced following recruitment to heterochromatin [, ]. KRAB-ZFPs probably constitute the single largest class of transcription factors within the human genome []. Although the function of KRAB-ZFPs is largely unknown, they appear to play important roles during cell differentiation and development. The KRAB domain is generally encoded by two exons. The regions coded by the two exons are known as KRAB-A and KRAB-B.; GO: 0003676 nucleic acid binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1V65_A.
Probab=31.57 E-value=33 Score=20.54 Aligned_cols=27 Identities=15% Similarity=0.263 Sum_probs=15.1
Q ss_pred HHHHHHHHH-hhhcCCChhhhhHHHHHH
Q 044275 70 VAAMGKAGG-QKWKSMSEAEKAPYVQKA 96 (168)
Q Consensus 70 ~~ev~k~lg-~~Wk~ls~~eK~~Y~~~A 96 (168)
|.+|+.-++ +.|..|.+.+|..|.+.-
T Consensus 3 f~Dvav~fs~eEW~~L~~~Qk~ly~dvm 30 (41)
T PF01352_consen 3 FEDVAVYFSQEEWELLDPAQKNLYRDVM 30 (41)
T ss_dssp ----TT---HHHHHTS-HHHHHHHHHHH
T ss_pred EEEEEEEcChhhcccccceecccchhHH
Confidence 445555554 569999999999988643
No 36
>PRK10363 cpxP periplasmic repressor CpxP; Reviewed
Probab=26.57 E-value=1.5e+02 Score=23.32 Aligned_cols=39 Identities=13% Similarity=0.234 Sum_probs=29.7
Q ss_pred HHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 044275 71 AAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYELALEAY 110 (168)
Q Consensus 71 ~ev~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~y~ke~~~y 110 (168)
.++.++-.+++.-|++++|..|....++....+.. +..+
T Consensus 111 Vem~k~~nqmy~lLTPEQKaq~~~~~~~rm~~~~~-~~~~ 149 (166)
T PRK10363 111 VEMAKVRNQMYRLLTPEQQAVLNEKHQQRMEQLRD-VTQW 149 (166)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH-HHhc
Confidence 34566678899999999999999887777766644 4443
No 37
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=26.47 E-value=30 Score=26.08 Aligned_cols=12 Identities=25% Similarity=0.462 Sum_probs=6.6
Q ss_pred HHHHHHHhhcCC
Q 044275 105 LALEAYKKQLND 116 (168)
Q Consensus 105 ke~~~y~~k~~~ 116 (168)
..+..|+.++..
T Consensus 98 ~K~~kyk~rLk~ 109 (136)
T PF04871_consen 98 EKRKKYKERLKE 109 (136)
T ss_pred HHHHHHHHHHHH
Confidence 344556666554
No 38
>PRK12751 cpxP periplasmic stress adaptor protein CpxP; Reviewed
Probab=26.03 E-value=1.4e+02 Score=23.22 Aligned_cols=31 Identities=16% Similarity=0.253 Sum_probs=23.3
Q ss_pred HHHHHHhhhcCCChhhhhHHHHHHHHHHHHH
Q 044275 73 MGKAGGQKWKSMSEAEKAPYVQKALNKKAEY 103 (168)
Q Consensus 73 v~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~y 103 (168)
+.+...+++..|++++|..|.+..++...+.
T Consensus 119 ~~~~~~qmy~lLTPEQra~l~~~~e~r~~~~ 149 (162)
T PRK12751 119 MAKVRNQMYNLLTPEQKEALNKKHQERIEKL 149 (162)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 3455577889999999999998666655544
No 39
>KOG4032 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.14 E-value=81 Score=25.24 Aligned_cols=29 Identities=7% Similarity=0.015 Sum_probs=18.2
Q ss_pred ccHHHHHHHHHhhhcCCChhhhhHHHHHH
Q 044275 68 KSVAAMGKAGGQKWKSMSEAEKAPYVQKA 96 (168)
Q Consensus 68 ~~~~ev~k~lg~~Wk~ls~~eK~~Y~~~A 96 (168)
-|...|+..|-..|..+....=..++.+.
T Consensus 85 DS~~~ia~~L~n~f~~~~~~N~~~ieell 113 (184)
T KOG4032|consen 85 DSLPEIAQLLLNLFHDIQNGNYAIIEELL 113 (184)
T ss_pred CCHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 36777888887777776655444444433
No 40
>PRK12750 cpxP periplasmic repressor CpxP; Reviewed
Probab=23.03 E-value=2.1e+02 Score=22.27 Aligned_cols=33 Identities=12% Similarity=0.148 Sum_probs=26.9
Q ss_pred HHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHH
Q 044275 75 KAGGQKWKSMSEAEKAPYVQKALNKKAEYELAL 107 (168)
Q Consensus 75 k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~y~ke~ 107 (168)
+...+++.-|++++|..|.++-.+-...|...+
T Consensus 128 ~~~~~~~~vLTpEQRak~~e~~~~r~~~~~~~~ 160 (170)
T PRK12750 128 EKRHQMLSILTPEQKAKFQELQQERMQECQDKM 160 (170)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345568999999999999998888777777666
No 41
>PF13300 DUF4078: Domain of unknown function (DUF4078)
Probab=22.47 E-value=36 Score=23.96 Aligned_cols=12 Identities=42% Similarity=0.741 Sum_probs=8.7
Q ss_pred ccceeeeeeccc
Q 044275 155 SSYFMGFYCFSS 166 (168)
Q Consensus 155 ~~~~~~~~~~~~ 166 (168)
-..=||||.||.
T Consensus 29 R~~Gvgfy~FS~ 40 (88)
T PF13300_consen 29 RTHGVGFYAFSK 40 (88)
T ss_pred HHHcceeeecCC
Confidence 345689999985
No 42
>PRK10236 hypothetical protein; Provisional
Probab=22.41 E-value=75 Score=26.47 Aligned_cols=24 Identities=21% Similarity=0.444 Sum_probs=19.7
Q ss_pred HHHHHHHhhhcCCChhhhhHHHHH
Q 044275 72 AMGKAGGQKWKSMSEAEKAPYVQK 95 (168)
Q Consensus 72 ev~k~lg~~Wk~ls~~eK~~Y~~~ 95 (168)
-+.+.+...|..||++|++.+-..
T Consensus 117 il~kll~~a~~kms~eE~~~L~~~ 140 (237)
T PRK10236 117 LLEQFLRNTWKKMDEEHKQEFLHA 140 (237)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHH
Confidence 356888999999999999777653
No 43
>PF06945 DUF1289: Protein of unknown function (DUF1289); InterPro: IPR010710 This family consists of a number of hypothetical bacterial proteins. The aligned region spans around 56 residues and contains 4 highly conserved cysteine residues towards the N terminus. The function of this family is unknown.
Probab=22.27 E-value=70 Score=19.89 Aligned_cols=18 Identities=33% Similarity=0.652 Sum_probs=13.5
Q ss_pred hhcCCChhhhhHHHHHHH
Q 044275 80 KWKSMSEAEKAPYVQKAL 97 (168)
Q Consensus 80 ~Wk~ls~~eK~~Y~~~A~ 97 (168)
.|..|++.+|........
T Consensus 29 ~W~~~s~~er~~i~~~l~ 46 (51)
T PF06945_consen 29 DWKSMSDDERRAILARLR 46 (51)
T ss_pred HHhhCCHHHHHHHHHHHH
Confidence 699999999876655433
No 44
>PF12650 DUF3784: Domain of unknown function (DUF3784); InterPro: IPR017259 This group represents an uncharacterised conserved protein.
Probab=21.82 E-value=62 Score=22.43 Aligned_cols=17 Identities=35% Similarity=0.561 Sum_probs=14.3
Q ss_pred hhhcCCChhhhhHHHHH
Q 044275 79 QKWKSMSEAEKAPYVQK 95 (168)
Q Consensus 79 ~~Wk~ls~~eK~~Y~~~ 95 (168)
.-|+.||++||+.|...
T Consensus 24 aGyntms~eEk~~~D~~ 40 (97)
T PF12650_consen 24 AGYNTMSKEEKEKYDKK 40 (97)
T ss_pred hhcccCCHHHHHHhhHH
Confidence 46899999999999763
No 45
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=20.81 E-value=43 Score=33.46 Aligned_cols=29 Identities=10% Similarity=0.172 Sum_probs=0.0
Q ss_pred CCcccccccccccCCCCCCcccchhhhhh
Q 044275 121 VSEDSWKSTSEVQSGKSSSSEINDEAEQE 149 (168)
Q Consensus 121 ~~e~s~kskse~~~~d~~~de~eddded~ 149 (168)
+.+.......+.+|+|+|+|+++|.|.|+
T Consensus 1404 ~dd~DeeeD~e~Ed~dEddd~edd~D~dd 1432 (1516)
T KOG1832|consen 1404 DDDSDEEEDDETEDEDEDDDEEDDLDRDD 1432 (1516)
T ss_pred ccccCccccchhhcccccccccccccccc
Done!