Query 044275
Match_columns 168
No_of_seqs 173 out of 1188
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 22:58:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044275.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044275hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2co9_A Thymus high mobility gr 99.9 5.7E-25 2E-29 158.0 12.6 86 33-119 9-94 (102)
2 2eqz_A High mobility group pro 99.9 3.2E-24 1.1E-28 149.4 10.7 79 33-111 7-86 (86)
3 1k99_A Upstream binding factor 99.9 1.6E-24 5.5E-29 155.0 8.2 83 33-116 2-84 (99)
4 2lhj_A High mobility group pro 99.9 4.6E-25 1.6E-29 157.0 4.0 85 29-114 10-96 (97)
5 1cg7_A Protein (NON histone pr 99.9 6.5E-25 2.2E-29 155.2 4.3 83 31-114 10-92 (93)
6 1hme_A High mobility group pro 99.9 3.9E-24 1.3E-28 145.7 7.3 76 36-112 1-76 (77)
7 1wgf_A Upstream binding factor 99.9 1.1E-24 3.8E-29 153.1 3.4 79 30-109 9-87 (90)
8 2crj_A SWI/SNF-related matrix- 99.9 2.8E-23 9.4E-28 146.4 10.6 79 36-115 2-80 (92)
9 2e6o_A HMG box-containing prot 99.9 8.8E-24 3E-28 147.6 7.2 77 34-111 10-86 (87)
10 2cs1_A PMS1 protein homolog 1; 99.9 5.8E-23 2E-27 144.8 10.3 80 37-117 3-82 (92)
11 3nm9_A HMG-D, high mobility gr 99.9 7.6E-23 2.6E-27 138.2 9.3 72 39-113 1-72 (73)
12 1aab_A High mobility group pro 99.9 1.5E-23 5.1E-28 144.9 4.4 77 36-113 2-80 (83)
13 1hry_A Human SRY; DNA, DNA-bin 99.9 4.2E-23 1.4E-27 140.2 6.2 74 38-112 1-74 (76)
14 1wxl_A Single-strand recogniti 99.9 2.1E-22 7.3E-27 136.0 7.5 72 39-113 1-72 (73)
15 2gzk_A Sex-determining region 99.9 7.3E-22 2.5E-26 151.2 10.5 80 33-113 80-159 (159)
16 1j46_A SRY, sex-determining re 99.9 5.5E-22 1.9E-26 137.8 8.8 78 38-116 1-78 (85)
17 1ckt_A High mobility group 1 p 99.9 5.1E-22 1.7E-26 133.1 7.6 70 41-110 1-71 (71)
18 1wz6_A HMG-box transcription f 99.9 1.5E-22 5.1E-27 139.6 4.7 77 37-114 3-79 (82)
19 4euw_A Transcription factor SO 99.9 6.9E-22 2.4E-26 142.9 7.9 81 33-114 21-101 (106)
20 4a3n_A Transcription factor SO 99.9 3.6E-22 1.2E-26 133.5 5.6 71 40-111 1-71 (71)
21 1v64_A Nucleolar transcription 99.9 1.5E-21 5.1E-26 141.7 8.9 79 33-116 8-87 (108)
22 2lef_A LEF-1 HMG, protein (lym 99.9 2.5E-21 8.7E-26 134.6 9.3 77 40-117 1-77 (86)
23 1gt0_D Transcription factor SO 99.9 1.6E-21 5.5E-26 133.7 8.1 75 40-115 1-75 (80)
24 3f27_D Transcription factor SO 99.9 9E-22 3.1E-26 135.7 6.7 76 38-114 3-78 (83)
25 1l8y_A Upstream binding factor 99.8 2.1E-21 7.1E-26 137.1 8.4 75 40-116 3-77 (91)
26 2yrq_A High mobility group pro 99.8 3.6E-21 1.2E-25 149.4 10.3 80 33-113 93-172 (173)
27 3u2b_C Transcription factor SO 99.8 2E-21 6.7E-26 132.7 6.3 74 40-114 1-74 (79)
28 1i11_A Transcription factor SO 99.8 2E-21 6.7E-26 133.6 6.2 75 39-114 2-76 (81)
29 3fgh_A Transcription factor A, 99.8 2.8E-21 9.7E-26 128.3 6.3 66 40-110 1-66 (67)
30 1v63_A Nucleolar transcription 99.8 3.9E-20 1.3E-24 132.7 10.1 78 37-117 4-81 (101)
31 2yrq_A High mobility group pro 99.8 2.3E-20 7.7E-25 144.9 9.5 82 33-114 7-89 (173)
32 2d7l_A WD repeat and HMG-box D 99.8 4.1E-20 1.4E-24 127.8 6.3 61 38-99 2-63 (81)
33 3tmm_A Transcription factor A, 99.8 1.1E-19 3.8E-24 148.1 7.2 82 34-116 34-115 (238)
34 2yuk_A Myeloid/lymphoid or mix 99.8 1.3E-20 4.5E-25 132.7 0.0 69 33-106 14-84 (90)
35 3tq6_A Transcription factor A, 99.8 4.3E-19 1.5E-23 142.5 8.1 78 38-116 6-83 (214)
36 2cto_A Novel protein; high mob 99.8 1.4E-19 4.9E-24 128.2 3.9 69 36-107 5-76 (93)
37 3tq6_A Transcription factor A, 99.8 6E-20 2.1E-24 147.5 1.4 80 33-117 106-185 (214)
38 3tmm_A Transcription factor A, 99.8 7.9E-20 2.7E-24 149.0 1.0 81 33-118 138-218 (238)
39 2gzk_A Sex-determining region 99.7 5.9E-17 2E-21 123.8 7.1 74 39-113 2-75 (159)
40 2qgu_A Probable signal peptide 66.3 5 0.00017 31.1 3.6 45 69-113 73-119 (211)
41 1ayz_A UBC2, ubiquitin-conjuga 29.0 17 0.00058 27.1 0.9 15 89-103 134-148 (169)
42 1j1d_B Troponin T, TNT; THIN f 23.3 1.7E+02 0.0059 20.2 5.3 51 51-104 28-78 (106)
43 2yua_A Williams-beuren syndrom 21.7 1.3E+02 0.0046 19.7 4.4 37 53-89 35-75 (99)
44 2ca6_A RAN GTPase-activating p 21.4 25 0.00086 28.3 0.6 31 123-153 338-368 (386)
45 2lkw_A Membrane fusion protein 20.4 20 0.00069 18.3 -0.1 11 40-50 9-19 (26)
No 1
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.92 E-value=5.7e-25 Score=157.99 Aligned_cols=86 Identities=31% Similarity=0.532 Sum_probs=81.3
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 044275 33 AGKKKDSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYELALEAYKK 112 (168)
Q Consensus 33 kk~~kdp~~PKRP~sAy~lF~~e~r~~vk~~~p~~~~~~ev~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~y~ke~~~y~~ 112 (168)
+++.+||++||||+|||||||+++|..|+.+||+ +++.+|+++||++|++|++++|++|+++|..++++|..+|..|+.
T Consensus 9 kk~~kdp~~pKrP~say~lF~~~~r~~i~~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~~ 87 (102)
T 2co9_A 9 KKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPN-ATFGEVSKIVASMWDGLGEEQKQVYKKKTEAAKKEYLKQLAAYRA 87 (102)
T ss_dssp CSSCCCCCSCCCCCCHHHHTHHHHHHHHHHHCTT-SCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5567899999999999999999999999999999 799999999999999999999999999999999999999999999
Q ss_pred hcCCCCC
Q 044275 113 QLNDNGA 119 (168)
Q Consensus 113 k~~~~~~ 119 (168)
++.....
T Consensus 88 ~~~~~~~ 94 (102)
T 2co9_A 88 SLVSKSY 94 (102)
T ss_dssp HHTSSCC
T ss_pred hcccccc
Confidence 9877433
No 2
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.91 E-value=3.2e-24 Score=149.42 Aligned_cols=79 Identities=29% Similarity=0.505 Sum_probs=73.9
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCc-cHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHH
Q 044275 33 AGKKKDSNAPKRPLSAYFIFMEDFRKSFKESFPDNK-SVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYELALEAYK 111 (168)
Q Consensus 33 kk~~kdp~~PKRP~sAy~lF~~e~r~~vk~~~p~~~-~~~ev~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~y~ke~~~y~ 111 (168)
++.++||++||||+|||||||+++|..|+.+||+.. ++.+|+++||++|++|++++|.+|+++|..++++|..+|..|+
T Consensus 7 ~~~~kdp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~Y~ 86 (86)
T 2eqz_A 7 GMAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMKDYG 86 (86)
T ss_dssp SCSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 456799999999999999999999999999999932 3799999999999999999999999999999999999999994
No 3
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=99.91 E-value=1.6e-24 Score=155.02 Aligned_cols=83 Identities=29% Similarity=0.506 Sum_probs=79.3
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 044275 33 AGKKKDSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYELALEAYKK 112 (168)
Q Consensus 33 kk~~kdp~~PKRP~sAy~lF~~e~r~~vk~~~p~~~~~~ev~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~y~ke~~~y~~ 112 (168)
+++.+||++||||+|||||||+++|..|+.+||+ +++.+|+++||++|++||+++|++|+++|+.++++|..+|.+|..
T Consensus 2 kkk~kdp~~PKRP~saf~lF~~~~r~~ik~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~Y~~e~~~y~~ 80 (99)
T 1k99_A 2 KKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPE-MSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFRE 80 (99)
T ss_dssp CCCCSSSSSCCCSCCHHHHHHHHHHHHHHTTCTT-SCSHHHHHHHHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHGGGGG
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999 799999999999999999999999999999999999999999999
Q ss_pred hcCC
Q 044275 113 QLND 116 (168)
Q Consensus 113 k~~~ 116 (168)
+.+.
T Consensus 81 ~~P~ 84 (99)
T 1k99_A 81 DHPD 84 (99)
T ss_dssp CCCC
T ss_pred HCCC
Confidence 8654
No 4
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=99.90 E-value=4.6e-25 Score=156.97 Aligned_cols=85 Identities=34% Similarity=0.579 Sum_probs=79.4
Q ss_pred chhcccCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCcc--HHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHH
Q 044275 29 KKEKAGKKKDSNAPKRPLSAYFIFMEDFRKSFKESFPDNKS--VAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYELA 106 (168)
Q Consensus 29 kk~~kk~~kdp~~PKRP~sAy~lF~~e~r~~vk~~~p~~~~--~~ev~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~y~ke 106 (168)
+++++++.+||++||||+|||||||+++|..|+.+||+ ++ +.+|+++||++|++|++++|++|+++|..++.+|..+
T Consensus 10 k~~~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~p~-~~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e 88 (97)
T 2lhj_A 10 VRRPRKAKKDPNAPKRALSSYMFFAKEKRVEIIAENPE-IAKDVAAIGKMIGAAWNALSDEEKKPYERMSDEDRVRYERE 88 (97)
T ss_dssp CCCTTCTTSCCCCCCCCCCSSTHHHHGGGGGHHHHCTT-STTCSSHHHHHHHHTSSSSCSTTTSSSSHHHHHHHHHHHHH
T ss_pred ccccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 33456778999999999999999999999999999999 68 9999999999999999999999999999999999999
Q ss_pred HHHHHhhc
Q 044275 107 LEAYKKQL 114 (168)
Q Consensus 107 ~~~y~~k~ 114 (168)
|..|+.+.
T Consensus 89 ~~~y~~~~ 96 (97)
T 2lhj_A 89 KAEYAQRK 96 (97)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcC
Confidence 99998764
No 5
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=99.90 E-value=6.5e-25 Score=155.19 Aligned_cols=83 Identities=42% Similarity=0.674 Sum_probs=78.7
Q ss_pred hcccCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 044275 31 EKAGKKKDSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYELALEAY 110 (168)
Q Consensus 31 ~~kk~~kdp~~PKRP~sAy~lF~~e~r~~vk~~~p~~~~~~ev~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~y~ke~~~y 110 (168)
+++++.+||+.||||+|||||||+++|..|+.+||+ +++.+|+++||++|++||+++|.+|+++|..++++|..+|..|
T Consensus 10 ~~~k~~kdp~~pKrP~saf~lF~~~~r~~~~~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~Y 88 (93)
T 1cg7_A 10 RTTRKKKDPNAPKRALSAYMFFANENRDIVRSENPD-ITFGQVGKKLGEKWKALTPEEKQPYEAKAQADKKRYESEKELY 88 (93)
T ss_dssp CCCCCCCCSSCCCSCCCHHHHHHHHHTSTTTTTCTT-SCHHHHTTTHHHHHHTTHHHHHHHHHHHHTTHHHHTTHHHHHH
T ss_pred ccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346678999999999999999999999999999999 7999999999999999999999999999999999999999999
Q ss_pred Hhhc
Q 044275 111 KKQL 114 (168)
Q Consensus 111 ~~k~ 114 (168)
+.++
T Consensus 89 ~~~~ 92 (93)
T 1cg7_A 89 NATL 92 (93)
T ss_dssp HHHT
T ss_pred HHcc
Confidence 9864
No 6
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=99.90 E-value=3.9e-24 Score=145.68 Aligned_cols=76 Identities=38% Similarity=0.704 Sum_probs=73.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 044275 36 KKDSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYELALEAYKK 112 (168)
Q Consensus 36 ~kdp~~PKRP~sAy~lF~~e~r~~vk~~~p~~~~~~ev~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~y~ke~~~y~~ 112 (168)
++||++||||+|||||||+++|..|+.+||+ +++.+|+++||++|+.||+++|.+|+++|+.++.+|..+|..|+.
T Consensus 1 kkdp~~pKrP~saf~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~ 76 (77)
T 1hme_A 1 FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPG-LSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 76 (77)
T ss_dssp CCCSSCCCCCCCTTHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHSCGGGSHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4799999999999999999999999999999 799999999999999999999999999999999999999999975
No 7
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.90 E-value=1.1e-24 Score=153.13 Aligned_cols=79 Identities=33% Similarity=0.506 Sum_probs=73.1
Q ss_pred hhcccCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHH
Q 044275 30 KEKAGKKKDSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYELALEA 109 (168)
Q Consensus 30 k~~kk~~kdp~~PKRP~sAy~lF~~e~r~~vk~~~p~~~~~~ev~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~y~ke~~~ 109 (168)
++++++.+||++||||+|||||||+++|..|+.+||+ +++.+|+++||++|++|++++|++|+++|+.++++|..+|..
T Consensus 9 ~k~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~ 87 (90)
T 1wgf_A 9 PSQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPE-LSESELTRLLARMWNDLSEKKKAKYKAREAALKAQSERKSGP 87 (90)
T ss_dssp SCSCCCSSCCCCCCCCCCHHHHHHHHTHHHHHHHCTT-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTCCCCSS
T ss_pred CCcCcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446778999999999999999999999999999999 799999999999999999999999999999999999876543
No 8
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=99.90 E-value=2.8e-23 Score=146.44 Aligned_cols=79 Identities=28% Similarity=0.527 Sum_probs=75.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 044275 36 KKDSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYELALEAYKKQLN 115 (168)
Q Consensus 36 ~kdp~~PKRP~sAy~lF~~e~r~~vk~~~p~~~~~~ev~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~y~ke~~~y~~k~~ 115 (168)
.+||++||||+|||||||+++|..|+.+||+ +++.+|+++||++|++|++++|++|+++|..++++|..+|..|+.+..
T Consensus 2 ~kdp~~pKrP~~af~lF~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~~~~~ 80 (92)
T 2crj_A 2 SSGSSGPKAPVTGYVRFLNERREQIRTRHPD-LPFPEITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKELWAYQQSEA 80 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHSSHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHccHH
Confidence 4799999999999999999999999999999 799999999999999999999999999999999999999999998644
No 9
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=99.89 E-value=8.8e-24 Score=147.57 Aligned_cols=77 Identities=23% Similarity=0.416 Sum_probs=73.9
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHH
Q 044275 34 GKKKDSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYELALEAYK 111 (168)
Q Consensus 34 k~~kdp~~PKRP~sAy~lF~~e~r~~vk~~~p~~~~~~ev~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~y~ke~~~y~ 111 (168)
+..+||+.||||+|||||||+++|..|+.+||+ +++.+|+++||++|++|++++|++|+++|+.++++|..++++|+
T Consensus 10 ~~~kdp~~pKrP~~af~lf~~~~r~~~~~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~P~Yk 86 (87)
T 2e6o_A 10 VSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPG-KDNRAISVILGDRWKKMKNEERRMYTLEAKALAEEQKRLNPDCW 86 (87)
T ss_dssp CCCCCCSSCCCCCCHHHHHHHHTHHHHHHHCTT-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHCcCCC
Confidence 357899999999999999999999999999999 79999999999999999999999999999999999999998885
No 10
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=5.8e-23 Score=144.76 Aligned_cols=80 Identities=28% Similarity=0.383 Sum_probs=76.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 044275 37 KDSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYELALEAYKKQLND 116 (168)
Q Consensus 37 kdp~~PKRP~sAy~lF~~e~r~~vk~~~p~~~~~~ev~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~y~ke~~~y~~k~~~ 116 (168)
.+|++||||+|||||||+++|..|+.+||+ +++.+|+++||++|+.|++++|++|+++|+.++++|..+|..|+.++..
T Consensus 3 ~~p~~pKrP~say~lF~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~y~~~~~~ 81 (92)
T 2cs1_A 3 SGSSGIKKPMSASALFVQDHRPQFLIENPK-TSLEDATLQIEELWKTLSEEEKLKYEEKATKDLERYNSQMKRAIEQESQ 81 (92)
T ss_dssp CCCSSSCCCCCHHHHHHHHHHHHHHHHCCS-SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHTTTHHHHHHHHHHTSTTTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 579999999999999999999999999999 7999999999999999999999999999999999999999999998765
Q ss_pred C
Q 044275 117 N 117 (168)
Q Consensus 117 ~ 117 (168)
.
T Consensus 82 ~ 82 (92)
T 2cs1_A 82 M 82 (92)
T ss_dssp C
T ss_pred C
Confidence 3
No 11
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=99.88 E-value=7.6e-23 Score=138.24 Aligned_cols=72 Identities=35% Similarity=0.686 Sum_probs=69.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 044275 39 SNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYELALEAYKKQ 113 (168)
Q Consensus 39 p~~PKRP~sAy~lF~~e~r~~vk~~~p~~~~~~ev~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~y~ke~~~y~~k 113 (168)
.++||||+|||||||+++|..|+.+||+ +++.+|+++||++|++|++ |++|+++|..++++|..+|++|+++
T Consensus 1 s~~PKrP~say~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~--K~~y~~~A~~~k~~y~~~~~~Y~~k 72 (73)
T 3nm9_A 1 SDKPKRPLSAYALWLNSARESIKRENPG-IKVTEVAKRGGELWRAMKD--KSEWEAKAAKAKDDYDRAVKEFEAN 72 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSSS-CCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHcCCc--hHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4789999999999999999999999999 7999999999999999998 9999999999999999999999875
No 12
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=99.88 E-value=1.5e-23 Score=144.88 Aligned_cols=77 Identities=31% Similarity=0.560 Sum_probs=73.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCcc--HHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 044275 36 KKDSNAPKRPLSAYFIFMEDFRKSFKESFPDNKS--VAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYELALEAYKKQ 113 (168)
Q Consensus 36 ~kdp~~PKRP~sAy~lF~~e~r~~vk~~~p~~~~--~~ev~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~y~ke~~~y~~k 113 (168)
++||++||||+|||||||+++|..|+.+||+ ++ +.+|+++||++|++|++++|.+|+++|..++++|..+|..|+..
T Consensus 2 kkdp~~PKrP~say~lF~~~~r~~~~~~~p~-~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~ 80 (83)
T 1aab_A 2 KGDPKKPRGKMSSYAFFVQTSREEHKKKHPD-ASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPP 80 (83)
T ss_dssp CCCTTCCCCCCCHHHHHHHHHHHHHTTSCTT-TCCCSSSSHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4799999999999999999999999999999 54 59999999999999999999999999999999999999999765
No 13
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=99.88 E-value=4.2e-23 Score=140.21 Aligned_cols=74 Identities=28% Similarity=0.446 Sum_probs=70.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 044275 38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYELALEAYKK 112 (168)
Q Consensus 38 dp~~PKRP~sAy~lF~~e~r~~vk~~~p~~~~~~ev~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~y~ke~~~y~~ 112 (168)
||+.||||+|||||||+++|..|+.+||+ +++.+|+++||++|+.|++++|++|.++|..++++|..++++|+.
T Consensus 1 dp~~pkrP~~af~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yky 74 (76)
T 1hry_A 1 VQDRVKRPMNAFIVWSRDQRRKMALENPR-MRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKY 74 (76)
T ss_dssp --CCCCCCCCHHHHHHHHHHHHHHHHCSC-CSSSHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHSSSCCC
T ss_pred CcCCCCCCCCHHHHHHHHHHHHHHHHCcC-CCHHHHHHHHHhHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
Confidence 68999999999999999999999999999 799999999999999999999999999999999999999999874
No 14
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=99.87 E-value=2.1e-22 Score=136.02 Aligned_cols=72 Identities=31% Similarity=0.618 Sum_probs=69.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 044275 39 SNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYELALEAYKKQ 113 (168)
Q Consensus 39 p~~PKRP~sAy~lF~~e~r~~vk~~~p~~~~~~ev~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~y~ke~~~y~~k 113 (168)
|++||||+|||||||+++|..|+.+||+ +++.+|+++||++|++| ++|.+|+++|..++++|..+|..|+.+
T Consensus 1 P~~pKrP~say~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~l--~eK~~y~~~A~~~k~~y~~e~~~Y~~~ 72 (73)
T 1wxl_A 1 SHMPKRATTAFMLWLNDTRESIKRENPG-IKVTEIAKKGGEMWKEL--KDKSKWEDAAAKDKQRYHDEMRNYKPE 72 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTT-CCHHHHHHHHHHHHHTC--TTHHHHHHHHHHHHHHHHTTTGGGTTC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhh--HhhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 7899999999999999999999999999 79999999999999999 899999999999999999999999764
No 15
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.87 E-value=7.3e-22 Score=151.19 Aligned_cols=80 Identities=38% Similarity=0.682 Sum_probs=76.3
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 044275 33 AGKKKDSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYELALEAYKK 112 (168)
Q Consensus 33 kk~~kdp~~PKRP~sAy~lF~~e~r~~vk~~~p~~~~~~ev~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~y~ke~~~y~~ 112 (168)
+++.+||+.||||+|||+|||+++|..|+.+||+ +++.+|+++||++|++|++++|++|+.+|..++.+|..+|.+|+.
T Consensus 80 kk~~kdp~~pKrp~say~lf~~~~r~~~~~~~p~-~~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~ 158 (159)
T 2gzk_A 80 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPG-LSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 158 (159)
T ss_dssp GGGSCCTTCCCCCCCHHHHHHHHHHHHHHHHCSC-CCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccccccccccccccccchhhHhhHHHHHHhCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567899999999999999999999999999999 799999999999999999999999999999999999999999986
Q ss_pred h
Q 044275 113 Q 113 (168)
Q Consensus 113 k 113 (168)
+
T Consensus 159 ~ 159 (159)
T 2gzk_A 159 K 159 (159)
T ss_dssp C
T ss_pred C
Confidence 3
No 16
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=99.86 E-value=5.5e-22 Score=137.75 Aligned_cols=78 Identities=27% Similarity=0.420 Sum_probs=74.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 044275 38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYELALEAYKKQLND 116 (168)
Q Consensus 38 dp~~PKRP~sAy~lF~~e~r~~vk~~~p~~~~~~ev~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~y~ke~~~y~~k~~~ 116 (168)
.|+.||||+|||||||+++|..|+.+||+ +++.+|+++||++|++||+++|++|.++|+.++++|..++++|+.+...
T Consensus 1 ~p~~pKRP~~af~lf~~~~r~~~~~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~prr 78 (85)
T 1j46_A 1 MQDRVKRPMNAFIVWSRDQRRKMALENPR-MRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRPRR 78 (85)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHHHSTT-SCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCCCC
T ss_pred CcCcCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCcccccCCCC
Confidence 48999999999999999999999999999 7999999999999999999999999999999999999999999876543
No 17
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=99.86 E-value=5.1e-22 Score=133.06 Aligned_cols=70 Identities=30% Similarity=0.596 Sum_probs=65.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCCc-cHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 044275 41 APKRPLSAYFIFMEDFRKSFKESFPDNK-SVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYELALEAY 110 (168)
Q Consensus 41 ~PKRP~sAy~lF~~e~r~~vk~~~p~~~-~~~ev~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~y~ke~~~y 110 (168)
+||||+|||+|||+++|..++.+||+.. ++.+|+++||++|++|++++|.+|+++|..++++|..+|..|
T Consensus 1 kPKrP~say~~F~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~Y 71 (71)
T 1ckt_A 1 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 71 (71)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCCTTTSHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5999999999999999999999999932 369999999999999999999999999999999999999876
No 18
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=99.86 E-value=1.5e-22 Score=139.57 Aligned_cols=77 Identities=21% Similarity=0.369 Sum_probs=73.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 044275 37 KDSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYELALEAYKKQL 114 (168)
Q Consensus 37 kdp~~PKRP~sAy~lF~~e~r~~vk~~~p~~~~~~ev~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~y~ke~~~y~~k~ 114 (168)
.+|++||||+|||||||+++|..|+.+||+ +++.+|+++||++|++|++++|++|+++|..++++|..++.+|+.+.
T Consensus 3 ~~~~~pkrP~~af~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~yk~~p 79 (82)
T 1wz6_A 3 SGSSGARRPMNAFLLFCKRHRSLVRQEHPR-LDNRGATKILADWWAVLDPKEKQKYTDMAKEYKDAFMKANPGYRSGP 79 (82)
T ss_dssp SSCCCSCCCCCHHHHHHHHHHHHHHHHCSS-SCTTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHCCSCSSCCCCT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHhHHhhcCC
Confidence 578999999999999999999999999999 79999999999999999999999999999999999999999998754
No 19
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=99.86 E-value=6.9e-22 Score=142.91 Aligned_cols=81 Identities=25% Similarity=0.486 Sum_probs=70.8
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 044275 33 AGKKKDSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYELALEAYKK 112 (168)
Q Consensus 33 kk~~kdp~~PKRP~sAy~lF~~e~r~~vk~~~p~~~~~~ev~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~y~ke~~~y~~ 112 (168)
....++|+.||||+|||||||+++|..|+.+||+ +++.+|+++||++|+.|++++|++|+++|..++++|..++++|+.
T Consensus 21 ~~~~k~~~~pKRP~naf~lF~~~~r~~~k~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Yky 99 (106)
T 4euw_A 21 FQSSKNKPHVKRPMNAFMVWAQAARRKLADQYPH-LHNAELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKY 99 (106)
T ss_dssp -------CCCCCCCCHHHHHHHHHHHHHHHHCTT-SCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHCTTCCC
T ss_pred hhccCCCCcCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhhhcCc
Confidence 4457889999999999999999999999999999 799999999999999999999999999999999999999999987
Q ss_pred hc
Q 044275 113 QL 114 (168)
Q Consensus 113 k~ 114 (168)
+.
T Consensus 100 ~P 101 (106)
T 4euw_A 100 QP 101 (106)
T ss_dssp --
T ss_pred CC
Confidence 54
No 20
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=99.86 E-value=3.6e-22 Score=133.52 Aligned_cols=71 Identities=30% Similarity=0.539 Sum_probs=63.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHH
Q 044275 40 NAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYELALEAYK 111 (168)
Q Consensus 40 ~~PKRP~sAy~lF~~e~r~~vk~~~p~~~~~~ev~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~y~ke~~~y~ 111 (168)
+.||||+|||||||+++|..|+.+||+ +++.+|+++||++|+.||+++|.+|+++|..++.+|..++++|+
T Consensus 1 gk~krP~~af~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~YK 71 (71)
T 4a3n_A 1 GSIRRPMNAFMVWAKDERKRLAQQNPD-LHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYK 71 (71)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTTCTT-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTCC---
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCcCcC
Confidence 579999999999999999999999999 79999999999999999999999999999999999999999885
No 21
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.85 E-value=1.5e-21 Score=141.72 Aligned_cols=79 Identities=28% Similarity=0.431 Sum_probs=73.8
Q ss_pred ccCCCCCCCC-CCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHH
Q 044275 33 AGKKKDSNAP-KRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYELALEAYK 111 (168)
Q Consensus 33 kk~~kdp~~P-KRP~sAy~lF~~e~r~~vk~~~p~~~~~~ev~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~y~ke~~~y~ 111 (168)
.++.+||+.| |||+|||+|||+++|..|+ + +++.+|+++||++|+.|++++|++|+++|+.++.+|..+|..|.
T Consensus 8 ~kk~kd~~~P~KrP~say~lF~~e~r~~~k----~-~~~~eisk~lg~~Wk~Ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~ 82 (108)
T 1v64_A 8 QLKDKFDGRPTKPPPNSYSLYCAELMANMK----D-VPSTERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFL 82 (108)
T ss_dssp CSSCCTTTSCCCCCSSHHHHHHHHHHHHCT----T-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCCCCCCCCHHHHHHHHHHHHHh----C-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467899999 9999999999999999886 5 69999999999999999999999999999999999999999999
Q ss_pred hhcCC
Q 044275 112 KQLND 116 (168)
Q Consensus 112 ~k~~~ 116 (168)
.++.+
T Consensus 83 ~~~~~ 87 (108)
T 1v64_A 83 ESLPE 87 (108)
T ss_dssp HHSCH
T ss_pred hhCCH
Confidence 98765
No 22
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.85 E-value=2.5e-21 Score=134.56 Aligned_cols=77 Identities=22% Similarity=0.374 Sum_probs=72.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 044275 40 NAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYELALEAYKKQLNDN 117 (168)
Q Consensus 40 ~~PKRP~sAy~lF~~e~r~~vk~~~p~~~~~~ev~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~y~ke~~~y~~k~~~~ 117 (168)
+.||||+|||||||+++|..|..+||+ +++.+|+++||++|++||+++|++|+++|+.++++|..+++.|+.+....
T Consensus 1 ~~pKRP~naf~lf~~~~r~~~~~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~p~~~ 77 (86)
T 2lef_A 1 MHIKKPLNAFMLYMKEMRANVVAESTL-KESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYG 77 (86)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHSSC-CCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHSTTCCSCSSTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHcccccCCCCCC
Confidence 469999999999999999999999999 79999999999999999999999999999999999999999998775543
No 23
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=99.85 E-value=1.6e-21 Score=133.67 Aligned_cols=75 Identities=25% Similarity=0.453 Sum_probs=71.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 044275 40 NAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYELALEAYKKQLN 115 (168)
Q Consensus 40 ~~PKRP~sAy~lF~~e~r~~vk~~~p~~~~~~ev~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~y~ke~~~y~~k~~ 115 (168)
+.||||+|||||||+++|..|+.+||+ +++.+|+++||++|+.||+++|++|+++|..++++|..++++|+.+..
T Consensus 1 ~~pkrP~~af~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~p~ 75 (80)
T 1gt0_D 1 DRVKRPMNAFMVWSRGQRRKMAQENPK-MHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPR 75 (80)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTT-SCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCCC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCcccccCCC
Confidence 479999999999999999999999999 799999999999999999999999999999999999999999987643
No 24
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=99.85 E-value=9e-22 Score=135.68 Aligned_cols=76 Identities=28% Similarity=0.472 Sum_probs=69.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 044275 38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYELALEAYKKQL 114 (168)
Q Consensus 38 dp~~PKRP~sAy~lF~~e~r~~vk~~~p~~~~~~ev~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~y~ke~~~y~~k~ 114 (168)
.++.||||+|||||||+++|..|+.+||+ +++.+|+++||++|+.|++++|.+|.++|+.++++|..++++|+.+.
T Consensus 3 ~~~~pKrP~~af~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yky~P 78 (83)
T 3f27_D 3 FTSRIRRPMNAFMVWAKDERKRLAQQNPD-LHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYKYRP 78 (83)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHHHHCSS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCCCCeeCC
Confidence 46789999999999999999999999999 79999999999999999999999999999999999999999998653
No 25
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=99.85 E-value=2.1e-21 Score=137.05 Aligned_cols=75 Identities=21% Similarity=0.325 Sum_probs=72.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 044275 40 NAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYELALEAYKKQLND 116 (168)
Q Consensus 40 ~~PKRP~sAy~lF~~e~r~~vk~~~p~~~~~~ev~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~y~ke~~~y~~k~~~ 116 (168)
+.||||+|||+||++++|..++.+||+ ++.+|++.||++|++|++.+|++|+.+|..++.+|+++|.+|+.+...
T Consensus 3 ~kPKrP~SAy~lf~~~~r~~~k~~~p~--~~~evsK~lGe~Wk~ls~~eK~pye~kA~~dK~rYekEm~~Y~~~~~~ 77 (91)
T 1l8y_A 3 KLPESPKRAEEIWQQSVIGDYLARFKN--DRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYERELSEMRAPPAA 77 (91)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHTTS--THHHHHHHHHHHHHTTGGGHHHHHHHHHHHHHHHHHHHHHTTSCGGGS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 689999999999999999999999998 799999999999999999999999999999999999999999987665
No 26
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=3.6e-21 Score=149.42 Aligned_cols=80 Identities=38% Similarity=0.682 Sum_probs=76.4
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 044275 33 AGKKKDSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYELALEAYKK 112 (168)
Q Consensus 33 kk~~kdp~~PKRP~sAy~lF~~e~r~~vk~~~p~~~~~~ev~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~y~ke~~~y~~ 112 (168)
+++.+||+.||||+|||||||+++|..|+.+||+ +++.+|+++||++|++|++++|++|+.+|..++.+|..+|.+|+.
T Consensus 93 kk~~kdp~~pKrP~saf~lf~~~~r~~~~~~~p~-~~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~ 171 (173)
T 2yrq_A 93 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPG-LSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 171 (173)
T ss_dssp SCSCCCSSSCCCCCCHHHHHHHHHHHHHHHHCSS-SCHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccccCCccccCcccHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456799999999999999999999999999999 799999999999999999999999999999999999999999987
Q ss_pred h
Q 044275 113 Q 113 (168)
Q Consensus 113 k 113 (168)
+
T Consensus 172 k 172 (173)
T 2yrq_A 172 K 172 (173)
T ss_dssp C
T ss_pred c
Confidence 5
No 27
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=99.84 E-value=2e-21 Score=132.70 Aligned_cols=74 Identities=26% Similarity=0.471 Sum_probs=70.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 044275 40 NAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYELALEAYKKQL 114 (168)
Q Consensus 40 ~~PKRP~sAy~lF~~e~r~~vk~~~p~~~~~~ev~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~y~ke~~~y~~k~ 114 (168)
+.||||+|||||||+++|..|+.+||+ +++.+|+++||++|+.|++++|++|.++|+.++++|..++++|+...
T Consensus 1 G~iKRP~naf~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~p~Yky~P 74 (79)
T 3u2b_C 1 GHIKRPMNAFMVWSQIERRKIMEQSPD-MHNAEISKRLGKRWKLLKDSDKIPFIQEAERLRLKHMADYPDYKYRP 74 (79)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTT-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHSSSCCCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCcC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCeeCC
Confidence 579999999999999999999999999 79999999999999999999999999999999999999999998654
No 28
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.84 E-value=2e-21 Score=133.62 Aligned_cols=75 Identities=28% Similarity=0.513 Sum_probs=68.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 044275 39 SNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYELALEAYKKQL 114 (168)
Q Consensus 39 p~~PKRP~sAy~lF~~e~r~~vk~~~p~~~~~~ev~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~y~ke~~~y~~k~ 114 (168)
++.||||+|||||||+++|..|+.+||+ +++.+|+++||++|++|++++|++|.++|+.++.+|..++++|+.+.
T Consensus 2 ~~~pkRP~naf~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~p~Yky~p 76 (81)
T 1i11_A 2 SPHIKRPMNAFMVWAKDERRKILQAFPD-MHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKYKP 76 (81)
T ss_dssp -CCSCCSCCHHHHHHHHHHHHHHTTCSS-CCHHHHHHHHHHHHTTSCSGGGHHHHHHHHHHHHHHHTTCSCC----
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHHHHCCCCeecc
Confidence 5789999999999999999999999999 79999999999999999999999999999999999999999998653
No 29
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=99.84 E-value=2.8e-21 Score=128.34 Aligned_cols=66 Identities=29% Similarity=0.523 Sum_probs=62.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 044275 40 NAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYELALEAY 110 (168)
Q Consensus 40 ~~PKRP~sAy~lF~~e~r~~vk~~~p~~~~~~ev~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~y~ke~~~y 110 (168)
|+||||+|||+|||+++|..++..|| .+|+++||++|+.||+++|.+|+++|..++.+|.++|.+|
T Consensus 1 g~PKrP~say~~F~~~~r~~~k~~~p-----~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y 66 (67)
T 3fgh_A 1 GKPKRPRSAYNVYVAERFQEAKGDSP-----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSW 66 (67)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSSSH-----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhcCH-----HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 68999999999999999999987554 5999999999999999999999999999999999999988
No 30
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.82 E-value=3.9e-20 Score=132.69 Aligned_cols=78 Identities=19% Similarity=0.392 Sum_probs=70.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 044275 37 KDSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYELALEAYKKQLND 116 (168)
Q Consensus 37 kdp~~PKRP~sAy~lF~~e~r~~vk~~~p~~~~~~ev~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~y~ke~~~y~~k~~~ 116 (168)
....+||||+|||||||++++. ...+++ +++.+|+++||++|+.|++++|++|+++|..++++|.++|..|..++.+
T Consensus 4 ~~~~~PKrP~say~lF~~e~~~--~p~~~~-~~~~eisK~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~~~~~~ 80 (101)
T 1v63_A 4 GSSGPKKPPMNGYQKFSQELLS--NGELNH-LPLKERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVHLDLWVKSLSP 80 (101)
T ss_dssp CCCSSCCCCSSSHHHHHHHHHH--HCTTTT-SCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred CCCCCCCCCCCHHHHHHHHHHh--CCCCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH
Confidence 4567899999999999999975 234555 5899999999999999999999999999999999999999999999877
Q ss_pred C
Q 044275 117 N 117 (168)
Q Consensus 117 ~ 117 (168)
.
T Consensus 81 ~ 81 (101)
T 1v63_A 81 Q 81 (101)
T ss_dssp T
T ss_pred H
Confidence 4
No 31
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=2.3e-20 Score=144.91 Aligned_cols=82 Identities=28% Similarity=0.498 Sum_probs=77.0
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCC-ccHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHH
Q 044275 33 AGKKKDSNAPKRPLSAYFIFMEDFRKSFKESFPDN-KSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYELALEAYK 111 (168)
Q Consensus 33 kk~~kdp~~PKRP~sAy~lF~~e~r~~vk~~~p~~-~~~~ev~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~y~ke~~~y~ 111 (168)
++.++||++||||+|||+|||+++|..|+.+||+. +++.+|+++||++|+.|++++|++|+++|..++.+|..+|..|.
T Consensus 7 k~~k~dp~~PKrp~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~ 86 (173)
T 2yrq_A 7 GMGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYI 86 (173)
T ss_dssp SSSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHCC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 45678999999999999999999999999999994 38999999999999999999999999999999999999999998
Q ss_pred hhc
Q 044275 112 KQL 114 (168)
Q Consensus 112 ~k~ 114 (168)
...
T Consensus 87 ~~~ 89 (173)
T 2yrq_A 87 PPK 89 (173)
T ss_dssp CCC
T ss_pred hhh
Confidence 754
No 32
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=4.1e-20 Score=127.82 Aligned_cols=61 Identities=25% Similarity=0.402 Sum_probs=58.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCCCcc-HHHHHHHHHhhhcCCChhhhhHHHHHHHHH
Q 044275 38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKS-VAAMGKAGGQKWKSMSEAEKAPYVQKALNK 99 (168)
Q Consensus 38 dp~~PKRP~sAy~lF~~e~r~~vk~~~p~~~~-~~ev~k~lg~~Wk~ls~~eK~~Y~~~A~~~ 99 (168)
+++.||||+|||||||+++|..|+.+||+ ++ +.+|+++||++|+.|++++|++|+++|..+
T Consensus 2 ~~~~PKRP~say~lF~~e~R~~ik~~~P~-~~~~~eisK~lge~Wk~ls~eeK~~y~~~A~~d 63 (81)
T 2d7l_A 2 SSGSSGRPKTGFQMWLEENRSNILSDNPD-FSDEADIIKEGMIRFRVLSTEERKVWANKAKGE 63 (81)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHHHCTT-CCSHHHHHHHHHHHHSSSCHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999 67 999999999999999999999999999886
No 33
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.79 E-value=1.1e-19 Score=148.13 Aligned_cols=82 Identities=22% Similarity=0.419 Sum_probs=76.9
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 044275 34 GKKKDSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYELALEAYKKQ 113 (168)
Q Consensus 34 k~~kdp~~PKRP~sAy~lF~~e~r~~vk~~~p~~~~~~ev~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~y~ke~~~y~~k 113 (168)
....+|++||||+|||+|||+++|..|+.+||+ .++.+|+++||++|+.|++++|.+|+++|..++++|..+|..|...
T Consensus 34 ~s~~~p~~PKrP~say~lF~~e~r~~~k~~~P~-~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~~ 112 (238)
T 3tmm_A 34 SSSVLASCPKKPVSSYLRFSKEQLPIFKAQNPD-AKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQ 112 (238)
T ss_dssp -CCHHHHSCCCCCCHHHHHHHHHHHHHHHHSTT-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346789999999999999999999999999999 6999999999999999999999999999999999999999999876
Q ss_pred cCC
Q 044275 114 LND 116 (168)
Q Consensus 114 ~~~ 116 (168)
+.+
T Consensus 113 ~~p 115 (238)
T 3tmm_A 113 LTP 115 (238)
T ss_dssp CCH
T ss_pred CCH
Confidence 654
No 34
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.78 E-value=1.3e-20 Score=132.75 Aligned_cols=69 Identities=28% Similarity=0.428 Sum_probs=63.7
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCcc--HHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHH
Q 044275 33 AGKKKDSNAPKRPLSAYFIFMEDFRKSFKESFPDNKS--VAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYELA 106 (168)
Q Consensus 33 kk~~kdp~~PKRP~sAy~lF~~e~r~~vk~~~p~~~~--~~ev~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~y~ke 106 (168)
.+..+||++||||+|||||||+++|..|+.+||+ ++ +.+|+ ++|+.|++++|++|+.+|+.++++|..+
T Consensus 14 ~k~~kDpnaPKRp~sAf~lf~~e~R~kik~enP~-~s~~~~eIs----e~Wk~ls~eeK~pY~~kA~~~K~~h~~~ 84 (90)
T 2yuk_A 14 LKWEKEEALGEMATVAPVLYTNINFPNLKEEFPD-WTTRVKQIA----KLWRKASSQERAPYVQKARDNRAALRIN 84 (90)
T ss_dssp HHHHHHHHHGGGCSSSHHHHHHHHCTTHHHHCCS-HHHHHHHHH----HHHHHSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhccCCCCCCCCCccHHHHHHHHhHHHHHHHCcC-ccchHHHHH----HHHHcCCHHHHHHHHHHHHHHHHHHHhh
Confidence 4456799999999999999999999999999999 78 88887 9999999999999999999999999753
No 35
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.77 E-value=4.3e-19 Score=142.54 Aligned_cols=78 Identities=23% Similarity=0.445 Sum_probs=74.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 044275 38 DSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYELALEAYKKQLND 116 (168)
Q Consensus 38 dp~~PKRP~sAy~lF~~e~r~~vk~~~p~~~~~~ev~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~y~ke~~~y~~k~~~ 116 (168)
.|++||||+|||+|||+++|..|+.+||+ .++.+|+++||++|+.||+++|.+|+++|..++++|..+|..|...+.+
T Consensus 6 ~p~~PKrP~say~lF~~~~r~~~k~~~P~-~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~~~tp 83 (214)
T 3tq6_A 6 LASCPKKPVSSYLRFSKEQLPIFKAQNPD-AKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQLTP 83 (214)
T ss_dssp HHHSCCCCCCHHHHHHHHHHHHHHHHCTT-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHccCHHhhhHHHHHHHHHHHHHHHHhhhhcccCCH
Confidence 47899999999999999999999999999 6999999999999999999999999999999999999999999877654
No 36
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.4e-19 Score=128.21 Aligned_cols=69 Identities=20% Similarity=0.290 Sum_probs=64.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHH---HhhhcCCChhhhhHHHHHHHHHHHHHHHHH
Q 044275 36 KKDSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAG---GQKWKSMSEAEKAPYVQKALNKKAEYELAL 107 (168)
Q Consensus 36 ~kdp~~PKRP~sAy~lF~~e~r~~vk~~~p~~~~~~ev~k~l---g~~Wk~ls~~eK~~Y~~~A~~~k~~y~ke~ 107 (168)
..+++.||||+|||||||+++|..|+.+ + +++.+|+++| |++|+.|++++|++|+++|.+++++|.+++
T Consensus 5 ~~~~~~PKRP~sAf~lF~~e~R~~ik~e--~-~~~~eisK~l~~cGe~Wk~ls~eEK~pYe~~A~~~K~~y~kd~ 76 (93)
T 2cto_A 5 SSGMPNRKASRNAYYFFVQEKIPELRRR--G-LPVARVADAIPYCSSDWALLREEEKEKYAEMAREWRAAQGKDP 76 (93)
T ss_dssp CCCCCCCCSSCCHHHHHHHTTHHHHHHH--T-CCCSSHHHHTGGGHHHHHHSCHHHHHHHHHHHHHHHHHHHHCS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHc--C-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccc
Confidence 4678999999999999999999999988 5 6899999999 999999999999999999999999998875
No 37
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.76 E-value=6e-20 Score=147.54 Aligned_cols=80 Identities=25% Similarity=0.420 Sum_probs=72.7
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 044275 33 AGKKKDSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYELALEAYKK 112 (168)
Q Consensus 33 kk~~kdp~~PKRP~sAy~lF~~e~r~~vk~~~p~~~~~~ev~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~y~ke~~~y~~ 112 (168)
++..+||+.||||+|||||||+++|..|+..|| .+|+++||++|++|++++|++|+.+|..++++|..+|.+|+.
T Consensus 106 kk~~kdp~~PKrP~say~lF~~e~r~~~k~~~p-----~ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~ 180 (214)
T 3tq6_A 106 KKELTLLGKPKRPRSAYNVYVAERFQEAKGDSP-----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEE 180 (214)
T ss_dssp HHHHHHTTCCCCCCCHHHHHHHHHTTTSSCSSH-----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccCcccccchhhhhHHHHHHhhccCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445689999999999999999999998876554 499999999999999999999999999999999999999999
Q ss_pred hcCCC
Q 044275 113 QLNDN 117 (168)
Q Consensus 113 k~~~~ 117 (168)
++...
T Consensus 181 ~~~~~ 185 (214)
T 3tq6_A 181 QMIEV 185 (214)
T ss_dssp HHHHT
T ss_pred hCccc
Confidence 98553
No 38
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.76 E-value=7.9e-20 Score=148.96 Aligned_cols=81 Identities=26% Similarity=0.442 Sum_probs=73.2
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 044275 33 AGKKKDSNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYELALEAYKK 112 (168)
Q Consensus 33 kk~~kdp~~PKRP~sAy~lF~~e~r~~vk~~~p~~~~~~ev~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~y~ke~~~y~~ 112 (168)
++..+||++||||+|||||||+++|..|+..|| .+|+++||++|++|++++|++|+.+|+.++++|+++|.+|+.
T Consensus 138 kk~~kdp~~PKrP~say~lF~~e~r~~~k~~~p-----~ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~ 212 (238)
T 3tmm_A 138 KKELTLLGKPKRPRSAYNVYVAERFQEAKGDSP-----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEE 212 (238)
T ss_dssp HHHHHHTTCCCCCCCHHHHHHHHHTTTSCCSSH-----HHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCCCCCCCcHHHHHHHHHHHHHhccCH-----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445689999999999999999999998876554 489999999999999999999999999999999999999999
Q ss_pred hcCCCC
Q 044275 113 QLNDNG 118 (168)
Q Consensus 113 k~~~~~ 118 (168)
++....
T Consensus 213 k~~~~~ 218 (238)
T 3tmm_A 213 QMIEVG 218 (238)
T ss_dssp HHHHTT
T ss_pred hCcccc
Confidence 975543
No 39
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.68 E-value=5.9e-17 Score=123.78 Aligned_cols=74 Identities=28% Similarity=0.466 Sum_probs=71.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 044275 39 SNAPKRPLSAYFIFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYELALEAYKKQ 113 (168)
Q Consensus 39 p~~PKRP~sAy~lF~~e~r~~vk~~~p~~~~~~ev~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~y~ke~~~y~~k 113 (168)
|+.||||+||||||+.+.|..|..+||+ +++.+|+++||++|+.|++++|.+|+++|..++.+|..++..|...
T Consensus 2 ~~~~Krp~~af~~~~~~~~~ki~~~~P~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~~ 75 (159)
T 2gzk_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPR-MRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYR 75 (159)
T ss_dssp TTCCCCCCCHHHHHHHHHHHHHHHHCSS-CCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCSSCSCC
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHhhHHHhccHHHHHHHHHHHHHHHhhccccc
Confidence 6789999999999999999999999999 7999999999999999999999999999999999999999999754
No 40
>2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, structural genomics, PSI-2, protein STR initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum}
Probab=66.33 E-value=5 Score=31.12 Aligned_cols=45 Identities=16% Similarity=0.183 Sum_probs=35.1
Q ss_pred cHHHHHH-HHHhhhcCCChhhhhHHHHHHHH-HHHHHHHHHHHHHhh
Q 044275 69 SVAAMGK-AGGQKWKSMSEAEKAPYVQKALN-KKAEYELALEAYKKQ 113 (168)
Q Consensus 69 ~~~ev~k-~lg~~Wk~ls~~eK~~Y~~~A~~-~k~~y~ke~~~y~~k 113 (168)
.+..+++ .||..|+.+++++++.|...... ...-|-..+..|...
T Consensus 73 D~~~~a~~vLG~~wr~at~~Qr~~F~~~F~~~L~~tY~~~l~~y~~q 119 (211)
T 2qgu_A 73 DFKRTTQIAMGRFWSQATPEQQQQIQDGFKSLLIRTYAGALANVRNQ 119 (211)
T ss_dssp CHHHHHHHHHGGGTTTSCHHHHHHHHHHHHHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHhHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 5555554 46999999999999999986665 556688888888754
No 41
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=29.04 E-value=17 Score=27.10 Aligned_cols=15 Identities=20% Similarity=0.359 Sum_probs=6.9
Q ss_pred hhHHHHHHHHHHHHH
Q 044275 89 KAPYVQKALNKKAEY 103 (168)
Q Consensus 89 K~~Y~~~A~~~k~~y 103 (168)
+..|...|..--.+|
T Consensus 134 ~~~y~~~~r~~~~~~ 148 (169)
T 1ayz_A 134 KSQYVKRVKETVEKS 148 (169)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555444443333
No 42
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=23.34 E-value=1.7e+02 Score=20.18 Aligned_cols=51 Identities=14% Similarity=0.279 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHH
Q 044275 51 IFMEDFRKSFKESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYE 104 (168)
Q Consensus 51 lF~~e~r~~vk~~~p~~~~~~ev~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~y~ 104 (168)
-|+.+.++.+. .++ ++..++...+-+.|..+..-+=+.|.-.+...+..|+
T Consensus 28 kiLaER~kpL~--id~-l~~~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yE 78 (106)
T 1j1d_B 28 KILAERRKVLA--IDH-LNEDQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYE 78 (106)
T ss_dssp HHHHHHHHHHH--HTT-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCC--CCC-CCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHH
Confidence 36777776653 334 5788899999999999988888889988888888885
No 43
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.67 E-value=1.3e+02 Score=19.70 Aligned_cols=37 Identities=16% Similarity=0.088 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhCCCCcc----HHHHHHHHHhhhcCCChhhh
Q 044275 53 MEDFRKSFKESFPDNKS----VAAMGKAGGQKWKSMSEAEK 89 (168)
Q Consensus 53 ~~e~r~~vk~~~p~~~~----~~ev~k~lg~~Wk~ls~~eK 89 (168)
.+.+|..++.-||+... ..+....|.+-|..|++..+
T Consensus 35 k~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~ 75 (99)
T 2yua_A 35 KAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATL 75 (99)
T ss_dssp HHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHH
T ss_pred HHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHH
Confidence 35566677788998421 36788889999999987655
No 44
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=21.44 E-value=25 Score=28.34 Aligned_cols=31 Identities=6% Similarity=0.025 Sum_probs=0.0
Q ss_pred cccccccccccCCCCCCcccchhhhhhhccc
Q 044275 123 EDSWKSTSEVQSGKSSSSEINDEAEQEFSSQ 153 (168)
Q Consensus 123 e~s~kskse~~~~d~~~de~eddded~~~~~ 153 (168)
++.+....+..++++++++++++++++....
T Consensus 338 ~~~d~~~e~e~e~eeeee~eee~~~~e~~~~ 368 (386)
T 2ca6_A 338 DELDDMEELTDEEEEDEEEEAESQSPEPETS 368 (386)
T ss_dssp CCCCSCC------------------------
T ss_pred hhcccccccccccccccccccccccccccch
No 45
>2lkw_A Membrane fusion protein P15; viral protein; NMR {Baboon orthoreovirus}
Probab=20.35 E-value=20 Score=18.30 Aligned_cols=11 Identities=27% Similarity=0.640 Sum_probs=7.8
Q ss_pred CCCCCCCCHHH
Q 044275 40 NAPKRPLSAYF 50 (168)
Q Consensus 40 ~~PKRP~sAy~ 50 (168)
.+|-.|+|||.
T Consensus 9 qppapppnafv 19 (26)
T 2lkw_A 9 QPPAPPPNAFV 19 (26)
T ss_pred cCCCcCCCeeE
Confidence 45667888885
Done!