BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044278
(107 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like
Domain From Homo Sapiens
Length = 71
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 11 SLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN-SQDFIKIHNIYETLSDPTTRAVYD 69
+ Y+VL V+P T E+K YR LA YHPD + N + F +I YE LSD R +YD
Sbjct: 7 TYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYD 66
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 12 LYEVLRVEPMTTISEIKTTYRSLAKVYHPDL-SGNSQDFIKIHNIYETLSDPTTRAVYDM 70
LY++L V P E+K YR A YHPD +G+++ F +I +E L+DP R +YD
Sbjct: 10 LYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREIYDQ 69
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 3 VMAQGTGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN-SQDFIKIHNIYETLSD 61
M + TG Y+VL V+P + +E+K YR +A +HPD + + ++ F +I YE LSD
Sbjct: 3 AMVKETG--YYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSD 60
Query: 62 PTTRAVYDM 70
R +YD
Sbjct: 61 EKKRQIYDQ 69
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily
C Menber 5
Length = 109
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 8 TGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN----SQDFIKIHNIYETLSDPT 63
+G SLY VL ++ T +IK +YR LA YHPD + + + F +I+N + L+D T
Sbjct: 15 SGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDAT 74
Query: 64 TRAVYD 69
R +YD
Sbjct: 75 KRNIYD 80
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN---SQDFIKIHNIYETLSDPTTRA 66
+ Y ++ V+P + IKT YR LA+ YHPD+S F ++ +E LSD RA
Sbjct: 5 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRA 64
Query: 67 VYDMSLVSR 75
YD R
Sbjct: 65 EYDQMWQHR 73
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 46.6 bits (109), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQ---DFIKIHNIYETLSDPTTRA 66
+ Y +L V+P + IKT YR LA+ YHPD+S + F + +E L D RA
Sbjct: 28 KDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRA 87
Query: 67 VYD 69
YD
Sbjct: 88 EYD 90
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 45.4 bits (106), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLS---GNSQDFIKIHNIYETLSDPTTR 65
G+ Y+ L + + EIK YR A YHPD + G + F +I Y+ LSDP R
Sbjct: 2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKR 61
Query: 66 AVYD 69
++D
Sbjct: 62 EIFD 65
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQD----FIKIHNIYETLSDPTTR 65
+ YE+L V EI+ Y+ LA YHPD + ++ F +I YE L+D R
Sbjct: 3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKR 62
Query: 66 AVYDM 70
A YD
Sbjct: 63 AAYDQ 67
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108)
Of The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQD----FIKIHNIYETLSDPTTR 65
+ YE+L V EI+ Y+ LA YHPD + ++ F +I YE L+D R
Sbjct: 3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKR 62
Query: 66 AVYDM 70
A YD
Sbjct: 63 AAYDQ 67
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 13 YEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQD-----FIKIHNIYETLSDPTTRAV 67
YEVL V+ + +IK YR LA +HPD + ++++ F + YE LSD R++
Sbjct: 12 YEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSL 71
Query: 68 YD 69
YD
Sbjct: 72 YD 73
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQD----FIKIHNIYETLSDPTTR 65
+ YE+L V EI+ Y+ LA YHPD + ++ F +I YE L+D R
Sbjct: 3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKR 62
Query: 66 AVYDM 70
A YD
Sbjct: 63 AAYDQ 67
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 7 GTGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNS----QDFIKIHNIYETLSDP 62
G+ Y++L V + EIK Y LAK YHPD + + + F ++ YE LSD
Sbjct: 4 GSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDE 63
Query: 63 TTRAVYDM 70
R YD
Sbjct: 64 VKRKQYDA 71
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human
Protein Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 13 YEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQD-----FIKIHNIYETLSDPTTRAV 67
YEVL V + IK YR LA +HPD + +++ F ++ YE LSD R +
Sbjct: 12 YEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDI 71
Query: 68 YD 69
YD
Sbjct: 72 YD 73
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Query: 11 SLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQDFI-----KIHNIYETLSDPTTR 65
S YE+L V + +IK YR A +HPD + ++++F ++ YE LSD R
Sbjct: 3 SYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKR 62
Query: 66 AVYD 69
+YD
Sbjct: 63 EIYD 66
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 12
Length = 78
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 5 AQGTGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLS---GNSQDFIKIHNIYETLSD 61
+ G+ YE+L V + ++K YR LA +HPD + G ++ F I Y LS+
Sbjct: 2 SSGSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSN 61
Query: 62 PTTRAVYDM 70
P R YD
Sbjct: 62 PEKRKQYDQ 70
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 13 YEVLRVEPMTTISEIKTTYRSLAKVYHPDLS---GNSQDFIKIHNIYETLSDPTTRAVYD 69
Y VL V + ++IK Y+ LA+ +HPD + G FI+I YE LS+ R YD
Sbjct: 20 YRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYD 79
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNS----QDFIKIHNIYETLSDPTTR 65
++ Y +L V + EI+ ++ LA HPD + N+ DF+KI+ YE L D R
Sbjct: 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLR 61
Query: 66 AVYD 69
YD
Sbjct: 62 KKYD 65
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 10/80 (12%)
Query: 1 MPVMAQGTGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNS----------QDFI 50
M + Q + Y +L +P IS++K Y+ L +YHPD Q FI
Sbjct: 1 MMAVEQMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFI 60
Query: 51 KIHNIYETLSDPTTRAVYDM 70
+I ++ L + T+ YD+
Sbjct: 61 EIDQAWKILGNEETKREYDL 80
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQ----DFIKIHNIYETLSDPTTR 65
++ Y +L V + EI+ ++ LA HPD + N+ DF+KI+ YE L D R
Sbjct: 21 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLR 80
Query: 66 AVYD 69
YD
Sbjct: 81 KKYD 84
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like
Protein
Length = 94
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 10/78 (12%)
Query: 3 VMAQGTGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNS----------QDFIKI 52
+ Q + Y +L +P +S++K Y+ L +YHPD Q FI+I
Sbjct: 9 ALEQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEI 68
Query: 53 HNIYETLSDPTTRAVYDM 70
++ L + T+ YD+
Sbjct: 69 DQAWKILGNEETKKKYDL 86
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human
Williams- Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 11 SLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQD----FIKIHNIYETLSDPTTRA 66
+LY++L V T ++IK Y +YHPD + S + F +I Y L T R
Sbjct: 18 ALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRR 77
Query: 67 VYDMSLVS 74
YD L+S
Sbjct: 78 KYDRGLLS 85
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 9
Length = 88
Score = 38.5 bits (88), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 13 YEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN---SQDFIKIHNIYETLSDPTTRAVYD 69
Y++L V + +IK + LA YHPD + + F +I YETLSD R YD
Sbjct: 10 YDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYD 69
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 38.5 bits (88), Expect = 9e-04, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Query: 3 VMAQGTGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN-------SQDFIKIHNI 55
++ Q R Y++L V+ EI YR LA +HPD N + FI I
Sbjct: 375 LLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAA 434
Query: 56 YETLSDPTTRAVYD 69
E LSDP R +D
Sbjct: 435 KEVLSDPEXRKKFD 448
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Query: 3 VMAQGTGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN-------SQDFIKIHNI 55
++ Q R Y++L V+ EI YR LA +HPD N + FI I
Sbjct: 375 LLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAA 434
Query: 56 YETLSDPTTRAVYD 69
E LSDP R +D
Sbjct: 435 KEVLSDPEMRKKFD 448
>pdb|4IT5|A Chain A, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|B Chain B, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|C Chain C, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|D Chain D, Chaperone Hscb From Vibrio Cholerae
Length = 174
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 9/57 (15%)
Query: 25 SEIKTTYRSLAKVYHPDLSGNS---------QDFIKIHNIYETLSDPTTRAVYDMSL 72
S + + +R+L K +HPD + Q +I++ Y+TL DP RA Y +SL
Sbjct: 21 SLLSSQFRALQKRFHPDNFATASERDRLXAVQQAAQINDAYQTLKDPLRRAEYLLSL 77
>pdb|3UO3|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
pdb|3UO3|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
Length = 181
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 20 PMTTI--SEIKTTYRSLAKVYHPDLSGN-SQDFIKIHNIYETLSDPTTRAVYDMSLV 73
P+ TI S ++ YR L +HPD++ S+ ++ Y TL DP R+ Y + L+
Sbjct: 26 PIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPLRRSQYMLKLL 82
>pdb|3UO2|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
pdb|3UO2|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
Length = 175
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 20 PMTTI--SEIKTTYRSLAKVYHPDLSGN-SQDFIKIHNIYETLSDPTTRAVYDMSLV 73
P+ TI S ++ YR L +HPD++ S+ ++ Y TL DP R+ Y + L+
Sbjct: 18 PIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPLRRSQYMLKLL 74
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 32.3 bits (72), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 8/70 (11%)
Query: 11 SLYEVLRVE-PMTTISEIKTTYRSLAKVYHPDLSGNSQD-------FIKIHNIYETLSDP 62
+ Y+VL V ++ YR+LA+ +HPD N ++ F I YETL D
Sbjct: 16 NCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDD 75
Query: 63 TTRAVYDMSL 72
+ YD L
Sbjct: 76 EAKTNYDYYL 85
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human
Ras- Associated Protein Rap1
Length = 90
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 13 YEVLRVEPMTTISEIKTTYRSLAKVYHPD--LSGNSQDFIK 51
+++L V+P + E+ YR LA + HPD ++ S+D K
Sbjct: 30 WDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFK 70
>pdb|1YDW|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis
Thaliana At4g09670
pdb|1YDW|B Chain B, X-Ray Structure Of Gene Product From Arabidopsis
Thaliana At4g09670
pdb|2Q4E|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At4g09670
pdb|2Q4E|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At4g09670
Length = 362
Score = 29.6 bits (65), Expect = 0.49, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQDFIKIHNIYET-LSDPTTRAV 67
R + + + P TIS + + RSL K + N + KIH YE+ L DP A+
Sbjct: 18 ARKVSRAIHLAPNATISGVAS--RSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDAL 75
Query: 68 Y 68
Y
Sbjct: 76 Y 76
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
C Menber 12
Length = 112
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 13 YEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNS----QDFIKIHNIYETLSDPTTRAVY 68
Y +L + ++++ +I ++ A HPD + + F K+ E L++ +RA Y
Sbjct: 23 YTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARY 82
Query: 69 D 69
D
Sbjct: 83 D 83
>pdb|1G69|A Chain A, Thiamin Phosphate Synthase
pdb|1G69|B Chain B, Thiamin Phosphate Synthase
Length = 228
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 45 NSQDFIKIHNIYETLSDPTTRAVYDMSLVSRRRTRTASFGCLGRSGF 91
+ D++ + IY T + TRAV +SL+ R + S +G G
Sbjct: 136 DGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGISIPIVGIGGI 182
>pdb|1G67|A Chain A, Thiamin Phosphate Synthase
pdb|1G67|B Chain B, Thiamin Phosphate Synthase
Length = 225
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 45 NSQDFIKIHNIYETLSDPTTRAVYDMSLVSRRRTRTASFGCLGRSGF 91
+ D++ + IY T + TRAV +SL+ R + S +G G
Sbjct: 133 DGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGISIPIVGIGGI 179
>pdb|1G4P|A Chain A, Thiamin Phosphate Synthase
pdb|1G4P|B Chain B, Thiamin Phosphate Synthase
pdb|1G4S|A Chain A, Thiamin Phosphate Synthase
pdb|1G4S|B Chain B, Thiamin Phosphate Synthase
Length = 226
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 45 NSQDFIKIHNIYETLSDPTTRAVYDMSLVSRRRTRTASFGCLGRSGF 91
+ D++ + IY T + TRAV +SL+ R + S +G G
Sbjct: 134 DGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGISIPIVGIGGI 180
>pdb|1G4E|A Chain A, Thiamin Phosphate Synthase
pdb|1G4E|B Chain B, Thiamin Phosphate Synthase
pdb|1G6C|A Chain A, Thiamin Phosphate Synthase
pdb|1G6C|B Chain B, Thiamin Phosphate Synthase
Length = 227
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 45 NSQDFIKIHNIYETLSDPTTRAVYDMSLVSRRRTRTASFGCLGRSGF 91
+ D++ + IY T + TRAV +SL+ R + S +G G
Sbjct: 135 DGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGISIPIVGIGGI 181
>pdb|2TPS|A Chain A, Thiamin Phosphate Synthase
pdb|2TPS|B Chain B, Thiamin Phosphate Synthase
pdb|1G4T|A Chain A, Thiamin Phosphate Synthase
pdb|1G4T|B Chain B, Thiamin Phosphate Synthase
Length = 227
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 45 NSQDFIKIHNIYETLSDPTTRAVYDMSLVSRRRTRTASFGCLGRSGF 91
+ D++ + IY T + TRAV +SL+ R + S +G G
Sbjct: 135 DGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGISIPIVGIGGI 181
>pdb|3O15|A Chain A, Crystal Structure Of Bacillus Subtilis Thiamin Phosphate
Synthase Complexed With A Carboxylated Thiazole
Phosphate
Length = 235
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 45 NSQDFIKIHNIYETLSDPTTRAVYDMSLVSRRRTRTASFGCLGRSGF 91
+ D++ + IY T + TRAV +SL+ R + S +G G
Sbjct: 143 DGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGISIPIVGIGGI 189
>pdb|3O16|A Chain A, Crystal Structure Of Bacillus Subtilis Thiamin Phosphate
Synthase K159a
Length = 235
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 45 NSQDFIKIHNIYETLSDPTTRAVYDMSLVSRRRTRTASFGCLGRSGF 91
+ D++ + IY T + TRAV +SL+ R + S +G G
Sbjct: 143 DGADYVGLGPIYPTETAKDTRAVQGVSLIEAVRRQGISIPIVGIGGI 189
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,135,128
Number of Sequences: 62578
Number of extensions: 104707
Number of successful extensions: 293
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 238
Number of HSP's gapped (non-prelim): 38
length of query: 107
length of database: 14,973,337
effective HSP length: 72
effective length of query: 35
effective length of database: 10,467,721
effective search space: 366370235
effective search space used: 366370235
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)