Query 044278
Match_columns 107
No_of_seqs 158 out of 1033
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 13:06:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044278.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044278hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 99.9 1.3E-26 2.9E-31 175.9 7.5 69 9-77 3-75 (371)
2 KOG0713 Molecular chaperone (D 99.9 2.7E-24 5.8E-29 160.6 8.3 70 8-77 14-87 (336)
3 PRK14288 chaperone protein Dna 99.9 2.3E-22 4.9E-27 153.7 6.8 66 9-74 2-71 (369)
4 PTZ00037 DnaJ_C chaperone prot 99.9 4.2E-22 9.2E-27 154.4 6.6 66 9-74 27-92 (421)
5 KOG0712 Molecular chaperone (D 99.9 1E-21 2.2E-26 147.7 8.2 68 9-76 3-71 (337)
6 PRK14296 chaperone protein Dna 99.8 1.2E-21 2.5E-26 149.9 6.5 66 9-74 3-71 (372)
7 PRK14279 chaperone protein Dna 99.8 2.1E-21 4.7E-26 149.3 6.6 65 9-73 8-76 (392)
8 PRK14286 chaperone protein Dna 99.8 4.9E-21 1.1E-25 146.5 6.8 66 9-74 3-72 (372)
9 PF00226 DnaJ: DnaJ domain; I 99.8 1.1E-20 2.4E-25 111.2 5.4 59 11-69 1-64 (64)
10 PRK14287 chaperone protein Dna 99.8 1.4E-20 3.1E-25 143.9 6.8 66 9-74 3-71 (371)
11 PRK14282 chaperone protein Dna 99.8 1.5E-20 3.2E-25 143.7 6.8 66 9-74 3-73 (369)
12 PRK14285 chaperone protein Dna 99.8 1.8E-20 3.9E-25 143.1 6.5 65 10-74 3-71 (365)
13 PRK14283 chaperone protein Dna 99.8 2.3E-20 5.1E-25 142.9 6.8 66 9-74 4-72 (378)
14 PRK14298 chaperone protein Dna 99.8 1.8E-20 4E-25 143.5 6.2 66 9-74 4-72 (377)
15 PRK14291 chaperone protein Dna 99.8 2.6E-20 5.6E-25 142.9 6.8 66 9-74 2-70 (382)
16 PRK14276 chaperone protein Dna 99.8 2.3E-20 5.1E-25 143.0 6.6 66 9-74 3-71 (380)
17 PRK14299 chaperone protein Dna 99.8 2.5E-20 5.5E-25 138.5 6.6 66 9-74 3-71 (291)
18 PRK14277 chaperone protein Dna 99.8 3.3E-20 7.1E-25 142.5 6.7 66 9-74 4-73 (386)
19 PRK14294 chaperone protein Dna 99.8 3.9E-20 8.5E-25 141.2 6.9 66 9-74 3-72 (366)
20 PRK14295 chaperone protein Dna 99.8 4.4E-20 9.6E-25 141.9 6.7 62 9-70 8-73 (389)
21 PRK14280 chaperone protein Dna 99.8 5.1E-20 1.1E-24 141.0 6.7 66 9-74 3-71 (376)
22 PRK14278 chaperone protein Dna 99.8 5.1E-20 1.1E-24 141.1 6.5 65 10-74 3-70 (378)
23 PRK14301 chaperone protein Dna 99.8 5.1E-20 1.1E-24 140.9 6.2 66 9-74 3-72 (373)
24 PRK14284 chaperone protein Dna 99.8 6.6E-20 1.4E-24 141.0 6.6 65 10-74 1-69 (391)
25 PRK14297 chaperone protein Dna 99.8 5E-20 1.1E-24 141.2 5.9 66 9-74 3-72 (380)
26 KOG0716 Molecular chaperone (D 99.8 7.1E-20 1.5E-24 133.5 6.1 66 9-74 30-99 (279)
27 PRK14281 chaperone protein Dna 99.8 1E-19 2.2E-24 140.3 6.5 65 10-74 3-71 (397)
28 KOG0715 Molecular chaperone (D 99.8 1.7E-19 3.8E-24 134.0 7.5 66 10-75 43-111 (288)
29 PRK10767 chaperone protein Dna 99.8 1.1E-19 2.4E-24 138.9 6.5 66 9-74 3-72 (371)
30 KOG0717 Molecular chaperone (D 99.8 4.2E-19 9.1E-24 137.1 7.6 76 5-80 3-83 (508)
31 PRK14290 chaperone protein Dna 99.8 2.7E-19 5.8E-24 136.6 6.3 65 10-74 3-72 (365)
32 TIGR02349 DnaJ_bact chaperone 99.8 3E-19 6.5E-24 135.7 6.5 64 11-74 1-67 (354)
33 PRK14300 chaperone protein Dna 99.8 4E-19 8.6E-24 136.0 6.2 65 10-74 3-70 (372)
34 PRK10266 curved DNA-binding pr 99.8 5.2E-19 1.1E-23 132.2 6.7 64 10-73 4-70 (306)
35 PRK14289 chaperone protein Dna 99.8 6.3E-19 1.4E-23 135.3 7.1 66 9-74 4-73 (386)
36 KOG0691 Molecular chaperone (D 99.8 8.7E-19 1.9E-23 130.3 7.1 70 9-78 4-77 (296)
37 PRK14292 chaperone protein Dna 99.8 5.2E-19 1.1E-23 135.2 6.0 65 10-74 2-69 (371)
38 PRK14293 chaperone protein Dna 99.8 6.8E-19 1.5E-23 134.7 6.5 65 10-74 3-70 (374)
39 smart00271 DnaJ DnaJ molecular 99.8 9.8E-19 2.1E-23 101.4 5.7 54 10-63 1-59 (60)
40 KOG0718 Molecular chaperone (D 99.8 8E-19 1.7E-23 135.8 5.5 69 7-75 6-81 (546)
41 PTZ00341 Ring-infected erythro 99.7 1.8E-18 4E-23 142.9 6.8 67 9-75 572-641 (1136)
42 PHA03102 Small T antigen; Revi 99.7 1.1E-18 2.4E-23 119.1 4.6 69 9-77 4-74 (153)
43 cd06257 DnaJ DnaJ domain or J- 99.7 4.3E-18 9.2E-23 97.0 5.7 51 11-61 1-55 (55)
44 KOG0719 Molecular chaperone (D 99.7 6.1E-18 1.3E-22 121.5 5.6 71 5-75 9-85 (264)
45 KOG0721 Molecular chaperone (D 99.7 3.9E-17 8.5E-22 116.1 6.4 69 8-76 97-169 (230)
46 KOG0624 dsRNA-activated protei 99.7 4.1E-17 8.8E-22 123.7 6.2 69 6-74 390-465 (504)
47 COG2214 CbpA DnaJ-class molecu 99.7 1.1E-16 2.5E-21 111.1 6.6 65 8-72 4-73 (237)
48 TIGR03835 termin_org_DnaJ term 99.7 1.4E-16 3E-21 129.5 7.2 65 10-74 2-69 (871)
49 PRK01356 hscB co-chaperone Hsc 99.7 3.5E-16 7.6E-21 108.3 7.2 65 10-74 2-75 (166)
50 PRK05014 hscB co-chaperone Hsc 99.7 2.9E-16 6.2E-21 109.1 6.8 65 10-74 1-76 (171)
51 PRK03578 hscB co-chaperone Hsc 99.6 6.6E-16 1.4E-20 107.8 7.5 68 7-74 3-81 (176)
52 PRK00294 hscB co-chaperone Hsc 99.6 2.9E-15 6.3E-20 104.3 7.7 67 8-74 2-79 (173)
53 PTZ00100 DnaJ chaperone protei 99.6 3.8E-15 8.3E-20 97.4 5.6 52 9-60 64-115 (116)
54 KOG0720 Molecular chaperone (D 99.6 4.1E-15 9E-20 115.1 5.0 66 9-74 234-302 (490)
55 PHA02624 large T antigen; Prov 99.5 4E-15 8.7E-20 119.3 4.8 66 3-68 4-71 (647)
56 KOG0722 Molecular chaperone (D 99.5 4E-15 8.6E-20 108.5 4.0 69 8-76 31-102 (329)
57 KOG0550 Molecular chaperone (D 99.5 6.4E-14 1.4E-18 107.8 4.5 71 6-76 369-444 (486)
58 KOG0714 Molecular chaperone (D 99.4 2.9E-13 6.2E-18 98.0 5.2 65 9-73 2-71 (306)
59 PRK09430 djlA Dna-J like membr 99.4 2.8E-13 6.1E-18 99.9 5.2 54 8-61 198-262 (267)
60 PRK01773 hscB co-chaperone Hsc 99.4 6.1E-13 1.3E-17 92.6 6.0 64 10-73 2-76 (173)
61 COG5407 SEC63 Preprotein trans 99.3 5.5E-12 1.2E-16 98.1 4.8 69 9-77 97-174 (610)
62 KOG1150 Predicted molecular ch 99.3 8.7E-12 1.9E-16 88.3 5.2 64 5-68 48-116 (250)
63 TIGR00714 hscB Fe-S protein as 99.2 3.6E-11 7.7E-16 82.6 6.5 53 22-74 3-64 (157)
64 COG5269 ZUO1 Ribosome-associat 99.1 1.2E-10 2.7E-15 85.9 4.3 68 7-74 40-116 (379)
65 KOG0568 Molecular chaperone (D 98.8 6.7E-09 1.5E-13 75.5 5.9 80 10-89 47-144 (342)
66 KOG0723 Molecular chaperone (D 98.7 3.5E-08 7.6E-13 63.4 5.4 50 13-62 59-108 (112)
67 KOG1789 Endocytosis protein RM 98.4 3.4E-07 7.4E-12 77.9 5.1 50 11-60 1282-1336(2235)
68 KOG3192 Mitochondrial J-type c 98.2 2E-06 4.3E-11 58.9 3.9 69 6-74 4-83 (168)
69 COG1076 DjlA DnaJ-domain-conta 97.2 0.00017 3.8E-09 50.1 2.0 50 10-59 113-173 (174)
70 COG1076 DjlA DnaJ-domain-conta 97.1 0.00027 5.8E-09 49.1 1.9 63 11-73 2-75 (174)
71 PF03656 Pam16: Pam16; InterP 97.1 0.0018 3.8E-08 43.2 5.3 52 12-63 60-111 (127)
72 KOG0431 Auxilin-like protein a 96.6 0.002 4.4E-08 51.0 3.2 22 22-43 400-421 (453)
73 PF11833 DUF3353: Protein of u 93.7 0.21 4.5E-06 35.5 5.3 38 19-60 1-38 (194)
74 PF13446 RPT: A repeated domai 92.7 0.32 6.9E-06 27.9 4.2 44 10-60 5-48 (62)
75 KOG0724 Zuotin and related mol 90.9 0.31 6.8E-06 36.8 3.6 49 22-70 4-60 (335)
76 PF14687 DUF4460: Domain of un 90.2 0.5 1.1E-05 30.7 3.6 42 20-61 4-53 (112)
77 KOG3442 Uncharacterized conser 84.1 2.8 6.2E-05 27.9 4.5 49 13-61 62-110 (132)
78 PF07709 SRR: Seven Residue Re 69.6 4.6 9.9E-05 16.4 1.5 13 48-60 2-14 (14)
79 COG5552 Uncharacterized conser 67.5 25 0.00055 21.4 5.7 34 10-43 3-36 (88)
80 PF07739 TipAS: TipAS antibiot 57.7 31 0.00067 21.4 4.5 48 17-69 51-99 (118)
81 PF12434 Malate_DH: Malate deh 47.6 29 0.00062 16.9 2.4 18 23-40 9-26 (28)
82 KOG0718 Molecular chaperone (D 43.2 17 0.00038 29.5 1.9 35 3-37 64-109 (546)
83 COG0089 RplW Ribosomal protein 41.3 25 0.00054 22.2 2.0 21 15-35 25-45 (94)
84 cd01780 PLC_epsilon_RA Ubiquit 38.7 38 0.00082 21.4 2.5 35 9-43 10-44 (93)
85 cd01388 SOX-TCF_HMG-box SOX-TC 37.3 82 0.0018 18.0 4.9 42 29-71 14-55 (72)
86 CHL00030 rpl23 ribosomal prote 36.4 33 0.00073 21.5 2.1 21 15-35 23-43 (93)
87 PF11207 DUF2989: Protein of u 32.9 1.6E+02 0.0034 21.2 5.3 60 15-74 2-61 (203)
88 PF09938 DUF2170: Uncharacteri 32.2 59 0.0013 22.0 2.9 30 8-37 97-127 (140)
89 PF10475 DUF2450: Protein of u 32.1 65 0.0014 23.9 3.4 34 24-63 181-214 (291)
90 TIGR03636 L23_arch archaeal ri 31.8 46 0.00099 20.1 2.1 20 15-34 18-37 (77)
91 PRK05738 rplW 50S ribosomal pr 29.6 51 0.0011 20.4 2.1 21 15-35 24-44 (92)
92 PF08447 PAS_3: PAS fold; Int 29.4 16 0.00034 21.1 -0.3 30 9-42 5-35 (91)
93 KOG2320 RAS effector RIN1 (con 28.5 58 0.0013 27.3 2.7 35 19-58 398-432 (651)
94 KOG3960 Myogenic helix-loop-he 27.8 39 0.00084 25.3 1.5 13 48-60 129-141 (284)
95 cd01390 HMGB-UBF_HMG-box HMGB- 27.6 1.1E+02 0.0024 16.6 4.6 39 31-70 15-53 (66)
96 PF04282 DUF438: Family of unk 26.1 41 0.0009 20.1 1.2 27 15-41 6-32 (71)
97 PF10041 DUF2277: Uncharacteri 24.7 1.7E+02 0.0038 17.8 5.2 33 11-43 4-36 (78)
98 PF04967 HTH_10: HTH DNA bindi 24.5 27 0.0006 19.5 0.2 22 14-35 31-52 (53)
99 PRK14548 50S ribosomal protein 24.5 72 0.0016 19.6 2.1 21 15-35 25-45 (84)
100 cd01389 MATA_HMG-box MATA_HMG- 24.3 1.5E+02 0.0033 17.0 4.7 42 28-70 13-54 (77)
101 PF15178 TOM_sub5: Mitochondri 23.6 1.1E+02 0.0024 16.9 2.4 24 13-36 2-25 (51)
102 PRK15321 putative type III sec 23.2 2.1E+02 0.0045 18.4 4.0 36 4-39 10-50 (120)
103 PF06767 Sif: Sif protein; In 23.1 1.2E+02 0.0025 23.5 3.3 40 28-67 44-83 (337)
104 PF00276 Ribosomal_L23: Riboso 22.7 81 0.0018 19.4 2.1 21 15-35 24-44 (91)
105 cd00084 HMG-box High Mobility 22.6 1.4E+02 0.0031 16.0 4.8 42 28-70 12-53 (66)
106 PF00076 RRM_1: RNA recognitio 22.5 80 0.0017 17.0 1.9 22 15-36 3-24 (70)
107 TIGR03759 conj_TIGR03759 integ 21.5 79 0.0017 22.7 2.0 30 7-38 34-63 (200)
108 PF02216 B: B domain; InterPr 20.8 1.4E+02 0.0031 16.8 2.6 31 9-42 10-40 (54)
109 KOG0527 HMG-box transcription 20.2 1.8E+02 0.0039 22.4 3.9 42 29-71 75-116 (331)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.3e-26 Score=175.89 Aligned_cols=69 Identities=42% Similarity=0.623 Sum_probs=64.4
Q ss_pred ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCC----ChHHHHHHHHHHHHcCCchhHHHHHHHhhhhcc
Q 044278 9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSG----NSQDFIKIHNIYETLSDPTTRAVYDMSLVSRRR 77 (107)
Q Consensus 9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~----~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~ 77 (107)
.+|||+||||+++|+.+|||+|||+|+++||||+++ +.++|++|++||+||+||++|+.||+++.....
T Consensus 3 ~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~ 75 (371)
T COG0484 3 KRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFK 75 (371)
T ss_pred ccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccc
Confidence 589999999999999999999999999999999997 346999999999999999999999999987654
No 2
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2.7e-24 Score=160.58 Aligned_cols=70 Identities=40% Similarity=0.619 Sum_probs=64.5
Q ss_pred CccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCCh----HHHHHHHHHHHHcCCchhHHHHHHHhhhhcc
Q 044278 8 TGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNS----QDFIKIHNIYETLSDPTTRAVYDMSLVSRRR 77 (107)
Q Consensus 8 ~~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~----~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~ 77 (107)
..+|||+||||+++|+..+||+|||+|++++|||+|+++ +.|+.|+.||+||+||.+|+.||..|...-.
T Consensus 14 ~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~ 87 (336)
T KOG0713|consen 14 AGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLK 87 (336)
T ss_pred cCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhc
Confidence 468999999999999999999999999999999999765 4899999999999999999999999965443
No 3
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.87 E-value=2.3e-22 Score=153.67 Aligned_cols=66 Identities=39% Similarity=0.568 Sum_probs=61.4
Q ss_pred ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCC----ChHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278 9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSG----NSQDFIKIHNIYETLSDPTTRAVYDMSLVS 74 (107)
Q Consensus 9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~----~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 74 (107)
..|||+||||+++|+.++||+|||+|+++||||+++ +.++|++|++||+||+||.+|..||.++..
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~ 71 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKK 71 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhccc
Confidence 479999999999999999999999999999999986 346899999999999999999999998754
No 4
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.86 E-value=4.2e-22 Score=154.36 Aligned_cols=66 Identities=44% Similarity=0.645 Sum_probs=63.3
Q ss_pred ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278 9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQDFIKIHNIYETLSDPTTRAVYDMSLVS 74 (107)
Q Consensus 9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 74 (107)
.+|||+||||+++|+.++||+|||+|+++||||++++.++|++|++||+||+||.+|+.||.++..
T Consensus 27 ~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~~e~F~~i~~AYevLsD~~kR~~YD~~G~~ 92 (421)
T PTZ00037 27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDPEKFKEISRAYEVLSDPEKRKIYDEYGEE 92 (421)
T ss_pred chhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHHhccHHHHHHHhhhcch
Confidence 579999999999999999999999999999999998889999999999999999999999998754
No 5
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1e-21 Score=147.72 Aligned_cols=68 Identities=40% Similarity=0.647 Sum_probs=63.6
Q ss_pred ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCCh-HHHHHHHHHHHHcCCchhHHHHHHHhhhhc
Q 044278 9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNS-QDFIKIHNIYETLSDPTTRAVYDMSLVSRR 76 (107)
Q Consensus 9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~-~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 76 (107)
...+|+||||+++|+.+|||+|||+|+++||||++++. ++|++|++||+||+||.+|..||+++...-
T Consensus 3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~ 71 (337)
T KOG0712|consen 3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPDAGEKFKEISQAYEVLSDPEKREIYDQYGEEGL 71 (337)
T ss_pred ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhh
Confidence 56899999999999999999999999999999999765 699999999999999999999999996644
No 6
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=1.2e-21 Score=149.94 Aligned_cols=66 Identities=35% Similarity=0.548 Sum_probs=61.4
Q ss_pred ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCC---ChHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278 9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSG---NSQDFIKIHNIYETLSDPTTRAVYDMSLVS 74 (107)
Q Consensus 9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~---~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 74 (107)
.+|||+||||+++|+.++||+|||+|+++||||+++ +.++|++|++||+||+||.+|+.||.++..
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~ 71 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFGHA 71 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhccch
Confidence 479999999999999999999999999999999984 346899999999999999999999998754
No 7
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=2.1e-21 Score=149.32 Aligned_cols=65 Identities=32% Similarity=0.535 Sum_probs=60.9
Q ss_pred ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchhHHHHHHHhh
Q 044278 9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN----SQDFIKIHNIYETLSDPTTRAVYDMSLV 73 (107)
Q Consensus 9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 73 (107)
.+|||+||||+++|+.++||+|||+|+++||||+++. .++|++|++||+||+||.+|+.||.++.
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~ 76 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRR 76 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhh
Confidence 5799999999999999999999999999999999863 4689999999999999999999999874
No 8
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=4.9e-21 Score=146.50 Aligned_cols=66 Identities=38% Similarity=0.591 Sum_probs=61.2
Q ss_pred ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278 9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN----SQDFIKIHNIYETLSDPTTRAVYDMSLVS 74 (107)
Q Consensus 9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 74 (107)
..|||+||||+++|+.++||+|||+|+++||||+++. .++|++|++||+||+||.+|+.||.++..
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~ 72 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKA 72 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCch
Confidence 4799999999999999999999999999999999853 46999999999999999999999998754
No 9
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.83 E-value=1.1e-20 Score=111.22 Aligned_cols=59 Identities=44% Similarity=0.774 Sum_probs=55.4
Q ss_pred CccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC-h----HHHHHHHHHHHHcCCchhHHHHH
Q 044278 11 SLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN-S----QDFIKIHNIYETLSDPTTRAVYD 69 (107)
Q Consensus 11 ~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~-~----~~f~~i~~Ay~~L~d~~~R~~Yd 69 (107)
|||+||||+++++.++|+++|+++++.+|||+++. . +.|..|++||++|++|.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 68999999999999999999999999999999743 3 58999999999999999999998
No 10
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=1.4e-20 Score=143.91 Aligned_cols=66 Identities=39% Similarity=0.700 Sum_probs=61.1
Q ss_pred ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278 9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN---SQDFIKIHNIYETLSDPTTRAVYDMSLVS 74 (107)
Q Consensus 9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 74 (107)
..|||+||||+++|+.++||+|||+|+++||||+++. .++|++|++||++|+||.+|+.||.++..
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~ 71 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHT 71 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCc
Confidence 4699999999999999999999999999999999853 45899999999999999999999998754
No 11
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=1.5e-20 Score=143.67 Aligned_cols=66 Identities=41% Similarity=0.620 Sum_probs=61.1
Q ss_pred ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC-----hHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278 9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN-----SQDFIKIHNIYETLSDPTTRAVYDMSLVS 74 (107)
Q Consensus 9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~-----~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 74 (107)
..|||+||||+++|+.++||+|||+|+++||||+++. .++|++|++||++|+||.+|+.||.++..
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~ 73 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYV 73 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCcc
Confidence 4799999999999999999999999999999999853 35899999999999999999999998754
No 12
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=1.8e-20 Score=143.09 Aligned_cols=65 Identities=35% Similarity=0.511 Sum_probs=60.6
Q ss_pred cCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278 10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN----SQDFIKIHNIYETLSDPTTRAVYDMSLVS 74 (107)
Q Consensus 10 ~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 74 (107)
+|||+||||+++|+.++||+|||+|+++||||+++. .++|++|++||++|+||.+|..||.++..
T Consensus 3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~ 71 (365)
T PRK14285 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHT 71 (365)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcc
Confidence 699999999999999999999999999999999853 35899999999999999999999998754
No 13
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=2.3e-20 Score=142.95 Aligned_cols=66 Identities=41% Similarity=0.608 Sum_probs=61.4
Q ss_pred ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCC---ChHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278 9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSG---NSQDFIKIHNIYETLSDPTTRAVYDMSLVS 74 (107)
Q Consensus 9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~---~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 74 (107)
..|||+||||+++|+.++||+|||+|+++||||+++ +.++|++|++||++|+||.+|..||.++..
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~ 72 (378)
T PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFGHA 72 (378)
T ss_pred cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhhccc
Confidence 579999999999999999999999999999999985 456999999999999999999999998753
No 14
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=1.8e-20 Score=143.55 Aligned_cols=66 Identities=36% Similarity=0.588 Sum_probs=61.1
Q ss_pred ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278 9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN---SQDFIKIHNIYETLSDPTTRAVYDMSLVS 74 (107)
Q Consensus 9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 74 (107)
.+|||+||||+++|+.++||+|||+|+++||||++++ .++|++|++||++|+||.+|+.||+++..
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~ 72 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHA 72 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhcCcc
Confidence 4799999999999999999999999999999999853 46899999999999999999999998753
No 15
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=2.6e-20 Score=142.92 Aligned_cols=66 Identities=41% Similarity=0.686 Sum_probs=61.4
Q ss_pred ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278 9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN---SQDFIKIHNIYETLSDPTTRAVYDMSLVS 74 (107)
Q Consensus 9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 74 (107)
.+|||+||||+++|+.++||+|||+|+++||||++++ .++|++|++||++|+||.+|..||.++..
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~ 70 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFGHA 70 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhhccc
Confidence 4799999999999999999999999999999999853 56899999999999999999999998764
No 16
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=2.3e-20 Score=143.05 Aligned_cols=66 Identities=38% Similarity=0.651 Sum_probs=61.3
Q ss_pred ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCC---ChHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278 9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSG---NSQDFIKIHNIYETLSDPTTRAVYDMSLVS 74 (107)
Q Consensus 9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~---~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 74 (107)
..|||+||||+++|+.++||+|||+|+++||||+++ +.++|++|++||++|+||.+|+.||.++..
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~ 71 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAA 71 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCc
Confidence 479999999999999999999999999999999985 356899999999999999999999998754
No 17
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=2.5e-20 Score=138.54 Aligned_cols=66 Identities=33% Similarity=0.625 Sum_probs=61.3
Q ss_pred ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278 9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN---SQDFIKIHNIYETLSDPTTRAVYDMSLVS 74 (107)
Q Consensus 9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 74 (107)
..|||+||||+++|+.++||+|||+|+++||||++++ .++|+.|++||++|+||.+|..||.++..
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~ 71 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTT 71 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCc
Confidence 4799999999999999999999999999999999853 46899999999999999999999998764
No 18
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=3.3e-20 Score=142.51 Aligned_cols=66 Identities=47% Similarity=0.697 Sum_probs=61.0
Q ss_pred ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278 9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN----SQDFIKIHNIYETLSDPTTRAVYDMSLVS 74 (107)
Q Consensus 9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 74 (107)
..|||+||||+++|+.++||+|||+|+++||||+++. .++|++|++||+||+||.+|..||.++..
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~ 73 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHA 73 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhccc
Confidence 3799999999999999999999999999999999863 35899999999999999999999998754
No 19
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=3.9e-20 Score=141.20 Aligned_cols=66 Identities=39% Similarity=0.590 Sum_probs=61.4
Q ss_pred ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278 9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN----SQDFIKIHNIYETLSDPTTRAVYDMSLVS 74 (107)
Q Consensus 9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 74 (107)
.+|||+||||+++|+.++||+|||+|+++||||+++. .+.|+.|++||+||+||.+|..||.++..
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~ 72 (366)
T PRK14294 3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHE 72 (366)
T ss_pred CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccc
Confidence 4799999999999999999999999999999999863 36899999999999999999999998854
No 20
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=4.4e-20 Score=141.94 Aligned_cols=62 Identities=40% Similarity=0.649 Sum_probs=58.4
Q ss_pred ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchhHHHHHH
Q 044278 9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN----SQDFIKIHNIYETLSDPTTRAVYDM 70 (107)
Q Consensus 9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~Yd~ 70 (107)
..|||+||||+++|+.++||+|||+|+++||||+++. .++|++|++||+||+||.+|..||.
T Consensus 8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~ 73 (389)
T PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDE 73 (389)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHH
Confidence 4699999999999999999999999999999999853 4699999999999999999999998
No 21
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=5.1e-20 Score=141.04 Aligned_cols=66 Identities=42% Similarity=0.639 Sum_probs=61.3
Q ss_pred ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCC---ChHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278 9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSG---NSQDFIKIHNIYETLSDPTTRAVYDMSLVS 74 (107)
Q Consensus 9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~---~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 74 (107)
..|||+||||+++|+.++||+|||+|+++||||+++ +.++|++|++||+||+||.+|..||.++..
T Consensus 3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~ 71 (376)
T PRK14280 3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFGHA 71 (376)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcCcc
Confidence 379999999999999999999999999999999984 356999999999999999999999998754
No 22
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=5.1e-20 Score=141.15 Aligned_cols=65 Identities=37% Similarity=0.594 Sum_probs=60.5
Q ss_pred cCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278 10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN---SQDFIKIHNIYETLSDPTTRAVYDMSLVS 74 (107)
Q Consensus 10 ~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 74 (107)
+|||+||||+++|+.++||+|||+|+++||||++++ .++|++|++||+||+||.+|..||.++..
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~ 70 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDP 70 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCc
Confidence 699999999999999999999999999999999864 35899999999999999999999998753
No 23
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=5.1e-20 Score=140.95 Aligned_cols=66 Identities=41% Similarity=0.556 Sum_probs=61.1
Q ss_pred ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278 9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN----SQDFIKIHNIYETLSDPTTRAVYDMSLVS 74 (107)
Q Consensus 9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 74 (107)
..|||+||||+++|+.++||+|||+|+++||||+++. .++|++|++||+||+||.+|..||.++..
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~ 72 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHA 72 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhcccc
Confidence 4799999999999999999999999999999999853 35899999999999999999999998754
No 24
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=6.6e-20 Score=141.03 Aligned_cols=65 Identities=35% Similarity=0.543 Sum_probs=60.4
Q ss_pred cCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278 10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN----SQDFIKIHNIYETLSDPTTRAVYDMSLVS 74 (107)
Q Consensus 10 ~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 74 (107)
.|||+||||+++|+.++||+|||+|+++||||+++. .++|++|++||++|+||.+|+.||+++..
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~ 69 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKD 69 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhcccc
Confidence 389999999999999999999999999999999863 45899999999999999999999998754
No 25
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=5e-20 Score=141.21 Aligned_cols=66 Identities=38% Similarity=0.610 Sum_probs=61.0
Q ss_pred ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278 9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN----SQDFIKIHNIYETLSDPTTRAVYDMSLVS 74 (107)
Q Consensus 9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 74 (107)
..|||+||||+++|+.++||+|||+|+++||||+++. .++|++|++||++|+||.+|..||.++..
T Consensus 3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~ 72 (380)
T PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTA 72 (380)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcc
Confidence 3799999999999999999999999999999999853 35899999999999999999999998754
No 26
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=7.1e-20 Score=133.55 Aligned_cols=66 Identities=44% Similarity=0.656 Sum_probs=61.4
Q ss_pred ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCCh----HHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278 9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNS----QDFIKIHNIYETLSDPTTRAVYDMSLVS 74 (107)
Q Consensus 9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~----~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 74 (107)
..++|+||||+++|+.++||++||+|++++|||++++. .+|++||+||+||+||.+|..||.++.-
T Consensus 30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~ 99 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGEL 99 (279)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhH
Confidence 46799999999999999999999999999999999663 5899999999999999999999999755
No 27
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=1e-19 Score=140.28 Aligned_cols=65 Identities=38% Similarity=0.580 Sum_probs=60.8
Q ss_pred cCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278 10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN----SQDFIKIHNIYETLSDPTTRAVYDMSLVS 74 (107)
Q Consensus 10 ~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 74 (107)
.|||+||||+++|+.++||+|||+|+++||||+++. .++|++|++||++|+||.+|..||.++..
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~ 71 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHA 71 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccch
Confidence 699999999999999999999999999999999863 36899999999999999999999998754
No 28
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.7e-19 Score=134.00 Aligned_cols=66 Identities=42% Similarity=0.668 Sum_probs=61.9
Q ss_pred cCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCC---ChHHHHHHHHHHHHcCCchhHHHHHHHhhhh
Q 044278 10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSG---NSQDFIKIHNIYETLSDPTTRAVYDMSLVSR 75 (107)
Q Consensus 10 ~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~---~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 75 (107)
.|||+||||+++|+..|||.||++|+++||||.+. +.++|+.|.+||+||+|+.+|..||..+...
T Consensus 43 ~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~ 111 (288)
T KOG0715|consen 43 EDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGLEQ 111 (288)
T ss_pred cchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc
Confidence 39999999999999999999999999999999984 4568999999999999999999999999765
No 29
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=1.1e-19 Score=138.85 Aligned_cols=66 Identities=44% Similarity=0.647 Sum_probs=61.0
Q ss_pred ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278 9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN----SQDFIKIHNIYETLSDPTTRAVYDMSLVS 74 (107)
Q Consensus 9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 74 (107)
..|||+||||+++|+.++||+|||+|+++||||+++. .++|++|++||++|+||.+|..||.++..
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~ 72 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHA 72 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhcccc
Confidence 4799999999999999999999999999999999853 35899999999999999999999998754
No 30
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=4.2e-19 Score=137.08 Aligned_cols=76 Identities=42% Similarity=0.546 Sum_probs=66.7
Q ss_pred CCCCccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC-----hHHHHHHHHHHHHcCCchhHHHHHHHhhhhcccC
Q 044278 5 AQGTGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN-----SQDFIKIHNIYETLSDPTTRAVYDMSLVSRRRTR 79 (107)
Q Consensus 5 ~~~~~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~-----~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~ 79 (107)
++...+.||+||||.++|+..+||++||+|+++||||++++ .++|+.|+.||+|||||..|..||......-...
T Consensus 3 ~~~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil~~~ 82 (508)
T KOG0717|consen 3 NPFKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQILRGK 82 (508)
T ss_pred CchhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHhcCC
Confidence 45667899999999999999999999999999999999865 4589999999999999999999998887544333
Q ss_pred C
Q 044278 80 T 80 (107)
Q Consensus 80 ~ 80 (107)
.
T Consensus 83 ~ 83 (508)
T KOG0717|consen 83 N 83 (508)
T ss_pred C
Confidence 3
No 31
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=2.7e-19 Score=136.59 Aligned_cols=65 Identities=37% Similarity=0.656 Sum_probs=60.4
Q ss_pred cCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC-----hHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278 10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN-----SQDFIKIHNIYETLSDPTTRAVYDMSLVS 74 (107)
Q Consensus 10 ~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~-----~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 74 (107)
.|||+||||+++|+.++||+|||+|++++|||+++. .++|+.|++||++|+||.+|..||.++..
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~ 72 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTV 72 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCc
Confidence 699999999999999999999999999999999853 35899999999999999999999998753
No 32
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.78 E-value=3e-19 Score=135.67 Aligned_cols=64 Identities=44% Similarity=0.655 Sum_probs=59.7
Q ss_pred CccchhccCCCCCHHHHHHHHHHHHHHhCCCCCC---ChHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278 11 SLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSG---NSQDFIKIHNIYETLSDPTTRAVYDMSLVS 74 (107)
Q Consensus 11 ~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~---~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 74 (107)
|||+||||+++|+.++||+||++|+++||||+++ +.++|++|++||++|+|+.+|..||.++..
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~ 67 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHA 67 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhhcccc
Confidence 7999999999999999999999999999999985 346899999999999999999999998754
No 33
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=4e-19 Score=135.98 Aligned_cols=65 Identities=32% Similarity=0.571 Sum_probs=60.5
Q ss_pred cCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCC---ChHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278 10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSG---NSQDFIKIHNIYETLSDPTTRAVYDMSLVS 74 (107)
Q Consensus 10 ~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~---~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 74 (107)
.|||+||||+++|+.++||+||++|+++||||+++ +.++|++|++||++|+|+.+|..||.++..
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~ 70 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHD 70 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhcccc
Confidence 69999999999999999999999999999999984 346999999999999999999999998753
No 34
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.77 E-value=5.2e-19 Score=132.25 Aligned_cols=64 Identities=38% Similarity=0.664 Sum_probs=60.0
Q ss_pred cCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCC---ChHHHHHHHHHHHHcCCchhHHHHHHHhh
Q 044278 10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSG---NSQDFIKIHNIYETLSDPTTRAVYDMSLV 73 (107)
Q Consensus 10 ~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~---~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 73 (107)
+|||+||||++.++.++||+|||+|++++|||+++ +.++|++|++||++|+||.+|..||.++.
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~ 70 (306)
T PRK10266 4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQ 70 (306)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence 69999999999999999999999999999999984 45699999999999999999999999763
No 35
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=6.3e-19 Score=135.35 Aligned_cols=66 Identities=39% Similarity=0.600 Sum_probs=61.1
Q ss_pred ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278 9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN----SQDFIKIHNIYETLSDPTTRAVYDMSLVS 74 (107)
Q Consensus 9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 74 (107)
..|||+||||+++|+.++|++|||+|+++||||+++. .++|++|++||++|+||.+|..||.++..
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~ 73 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHA 73 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhccc
Confidence 4799999999999999999999999999999999853 35899999999999999999999998753
No 36
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=8.7e-19 Score=130.34 Aligned_cols=70 Identities=34% Similarity=0.520 Sum_probs=64.5
Q ss_pred ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCCh----HHHHHHHHHHHHcCCchhHHHHHHHhhhhccc
Q 044278 9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNS----QDFIKIHNIYETLSDPTTRAVYDMSLVSRRRT 78 (107)
Q Consensus 9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~----~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~ 78 (107)
..|||+||||+..++..+|++||+..+++||||+|+++ +.|+.|.+||+||+|+..|..||..+......
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~ 77 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSA 77 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccc
Confidence 78999999999999999999999999999999999765 48999999999999999999999999775433
No 37
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=5.2e-19 Score=135.18 Aligned_cols=65 Identities=38% Similarity=0.599 Sum_probs=60.6
Q ss_pred cCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278 10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN---SQDFIKIHNIYETLSDPTTRAVYDMSLVS 74 (107)
Q Consensus 10 ~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 74 (107)
.|||+||||+++|+.++||+||++|++++|||+++. .++|+.|++||++|+||.+|+.||.++..
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~ 69 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTA 69 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCc
Confidence 599999999999999999999999999999999953 46899999999999999999999998754
No 38
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=6.8e-19 Score=134.75 Aligned_cols=65 Identities=42% Similarity=0.645 Sum_probs=60.6
Q ss_pred cCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCC---ChHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278 10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSG---NSQDFIKIHNIYETLSDPTTRAVYDMSLVS 74 (107)
Q Consensus 10 ~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~---~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 74 (107)
.|||+||||+++|+.++||+|||+|++++|||+++ +.++|+.|++||++|+||.+|+.||.++..
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~ 70 (374)
T PRK14293 3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFGEA 70 (374)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhhcccc
Confidence 69999999999999999999999999999999984 356999999999999999999999998753
No 39
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.77 E-value=9.8e-19 Score=101.42 Aligned_cols=54 Identities=43% Similarity=0.713 Sum_probs=50.4
Q ss_pred cCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCC-----ChHHHHHHHHHHHHcCCch
Q 044278 10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSG-----NSQDFIKIHNIYETLSDPT 63 (107)
Q Consensus 10 ~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~-----~~~~f~~i~~Ay~~L~d~~ 63 (107)
+|||+||||+++++.++|+++|+++++.+|||+++ ..+.|..|++||++|++|.
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence 48999999999999999999999999999999997 3468999999999999985
No 40
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=8e-19 Score=135.82 Aligned_cols=69 Identities=36% Similarity=0.579 Sum_probs=62.6
Q ss_pred CCccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC-------hHHHHHHHHHHHHcCCchhHHHHHHHhhhh
Q 044278 7 GTGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN-------SQDFIKIHNIYETLSDPTTRAVYDMSLVSR 75 (107)
Q Consensus 7 ~~~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~-------~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 75 (107)
..+.+||.+|+|+++|+.++|++|||++++.+|||+..+ ++.|+.|+.||+||+||.+|..||.+|...
T Consensus 6 ~~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qG 81 (546)
T KOG0718|consen 6 LDEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQG 81 (546)
T ss_pred cchhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcc
Confidence 345699999999999999999999999999999999843 347999999999999999999999999653
No 41
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.75 E-value=1.8e-18 Score=142.94 Aligned_cols=67 Identities=25% Similarity=0.390 Sum_probs=62.2
Q ss_pred ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCchhHHHHHHHhhhh
Q 044278 9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN---SQDFIKIHNIYETLSDPTTRAVYDMSLVSR 75 (107)
Q Consensus 9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 75 (107)
..+||+||||+++|+..+||+|||+|+++||||+++. ..+|+.|++||+||+||.+|..||.+|...
T Consensus 572 d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~G 641 (1136)
T PTZ00341 572 DTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYDG 641 (1136)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhccccc
Confidence 5899999999999999999999999999999999863 458999999999999999999999988653
No 42
>PHA03102 Small T antigen; Reviewed
Probab=99.75 E-value=1.1e-18 Score=119.09 Aligned_cols=69 Identities=12% Similarity=0.283 Sum_probs=63.9
Q ss_pred ccCccchhccCCCC--CHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchhHHHHHHHhhhhcc
Q 044278 9 GRSLYEVLRVEPMT--TISEIKTTYRSLAKVYHPDLSGNSQDFIKIHNIYETLSDPTTRAVYDMSLVSRRR 77 (107)
Q Consensus 9 ~~~~Y~iLgv~~~a--~~~~Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~ 77 (107)
...+|+||||+++| |.++||+|||++++++|||+++++++|+.|++||++|+++.+|..||..+.....
T Consensus 4 ~~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~~ 74 (153)
T PHA03102 4 SKELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGDEEKMKELNTLYKKFRESVKSLRDLDGEEDSSS 74 (153)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCchhHHHHHHHHHHHHHhhHHHhccccccCCcccc
Confidence 35689999999999 9999999999999999999999999999999999999999999999999866443
No 43
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.74 E-value=4.3e-18 Score=97.03 Aligned_cols=51 Identities=43% Similarity=0.728 Sum_probs=48.0
Q ss_pred CccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCC
Q 044278 11 SLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN----SQDFIKIHNIYETLSD 61 (107)
Q Consensus 11 ~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d 61 (107)
|||+||||+++++.++|+++|+++++++|||+++. .+.|..|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 69999999999999999999999999999999974 5689999999999986
No 44
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=6.1e-18 Score=121.47 Aligned_cols=71 Identities=37% Similarity=0.509 Sum_probs=63.7
Q ss_pred CCCCccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCC------ChHHHHHHHHHHHHcCCchhHHHHHHHhhhh
Q 044278 5 AQGTGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSG------NSQDFIKIHNIYETLSDPTTRAVYDMSLVSR 75 (107)
Q Consensus 5 ~~~~~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~------~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 75 (107)
-....+++|+||||.++|+..+|++||++|++.+|||++. +.+.|+.|+.||.||+|..+|+.||..|...
T Consensus 9 ~~f~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~id 85 (264)
T KOG0719|consen 9 GSFNKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSID 85 (264)
T ss_pred ccccccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCC
Confidence 3455779999999999999999999999999999999983 2348999999999999999999999988553
No 45
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=3.9e-17 Score=116.12 Aligned_cols=69 Identities=30% Similarity=0.493 Sum_probs=62.8
Q ss_pred CccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCC----CChHHHHHHHHHHHHcCCchhHHHHHHHhhhhc
Q 044278 8 TGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLS----GNSQDFIKIHNIYETLSDPTTRAVYDMSLVSRR 76 (107)
Q Consensus 8 ~~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~----~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 76 (107)
...|+|+||||+++++..|||+|||+|++++|||++ ++.+.|..|.+||+.|+|+..|..|..+++...
T Consensus 97 ~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PDG 169 (230)
T KOG0721|consen 97 QKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNPDG 169 (230)
T ss_pred hcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCCCC
Confidence 357999999999999999999999999999999996 345678999999999999999999999997644
No 46
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.69 E-value=4.1e-17 Score=123.73 Aligned_cols=69 Identities=35% Similarity=0.528 Sum_probs=63.3
Q ss_pred CCCccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCChH-------HHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278 6 QGTGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQ-------DFIKIHNIYETLSDPTTRAVYDMSLVS 74 (107)
Q Consensus 6 ~~~~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~-------~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 74 (107)
.+..+|||+||||.++|+..+|.+|||+++.+||||...+.+ +|..|-.|-+||+||.+|+.||.....
T Consensus 390 qs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnGeDP 465 (504)
T KOG0624|consen 390 QSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNGEDP 465 (504)
T ss_pred HhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCCCCC
Confidence 457899999999999999999999999999999999986654 799999999999999999999987655
No 47
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=1.1e-16 Score=111.14 Aligned_cols=65 Identities=43% Similarity=0.657 Sum_probs=60.1
Q ss_pred CccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC-----hHHHHHHHHHHHHcCCchhHHHHHHHh
Q 044278 8 TGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN-----SQDFIKIHNIYETLSDPTTRAVYDMSL 72 (107)
Q Consensus 8 ~~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~-----~~~f~~i~~Ay~~L~d~~~R~~Yd~~~ 72 (107)
...+||+||||+++|+..+|+++|+++++++|||+++. .+.|+.|++||++|+|+..|..||..+
T Consensus 4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~ 73 (237)
T COG2214 4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG 73 (237)
T ss_pred hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence 35799999999999999999999999999999999853 368999999999999999999999864
No 48
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.67 E-value=1.4e-16 Score=129.52 Aligned_cols=65 Identities=38% Similarity=0.573 Sum_probs=60.3
Q ss_pred cCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278 10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN---SQDFIKIHNIYETLSDPTTRAVYDMSLVS 74 (107)
Q Consensus 10 ~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 74 (107)
.|||+||||+++|+..+||++||+|++++|||+++. ..+|+.|++||++|+||.+|..||.++..
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~fG~a 69 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKYGHD 69 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhhccc
Confidence 699999999999999999999999999999999854 34799999999999999999999998754
No 49
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.65 E-value=3.5e-16 Score=108.25 Aligned_cols=65 Identities=23% Similarity=0.386 Sum_probs=57.7
Q ss_pred cCccchhccCCC--CCHHHHHHHHHHHHHHhCCCCCCCh-------HHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278 10 RSLYEVLRVEPM--TTISEIKTTYRSLAKVYHPDLSGNS-------QDFIKIHNIYETLSDPTTRAVYDMSLVS 74 (107)
Q Consensus 10 ~~~Y~iLgv~~~--a~~~~Ik~ayr~l~~~~hPD~~~~~-------~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 74 (107)
.|||+||||++. ++..+|+++|+++++++|||+.... +.+..|++||+||+||.+|..|+..+.+
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l~g 75 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLLQN 75 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHccC
Confidence 589999999997 7899999999999999999998542 2477999999999999999999888743
No 50
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.65 E-value=2.9e-16 Score=109.12 Aligned_cols=65 Identities=26% Similarity=0.458 Sum_probs=57.3
Q ss_pred cCccchhccCCC--CCHHHHHHHHHHHHHHhCCCCCCC---------hHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278 10 RSLYEVLRVEPM--TTISEIKTTYRSLAKVYHPDLSGN---------SQDFIKIHNIYETLSDPTTRAVYDMSLVS 74 (107)
Q Consensus 10 ~~~Y~iLgv~~~--a~~~~Ik~ayr~l~~~~hPD~~~~---------~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 74 (107)
.|||+||||++. ++..+|+++|+++++++|||+... .+.|..||+||++|+||.+|..|+..+.+
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l~g 76 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSLHG 76 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHhcC
Confidence 489999999996 688999999999999999999732 23689999999999999999999977653
No 51
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.64 E-value=6.6e-16 Score=107.78 Aligned_cols=68 Identities=22% Similarity=0.341 Sum_probs=59.1
Q ss_pred CCccCccchhccCCC--CCHHHHHHHHHHHHHHhCCCCCCC---------hHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278 7 GTGRSLYEVLRVEPM--TTISEIKTTYRSLAKVYHPDLSGN---------SQDFIKIHNIYETLSDPTTRAVYDMSLVS 74 (107)
Q Consensus 7 ~~~~~~Y~iLgv~~~--a~~~~Ik~ayr~l~~~~hPD~~~~---------~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 74 (107)
+...|||+||||++. ++..+|+++|++|++++|||++.. .+.+..||+||.+|++|.+|..|...+.+
T Consensus 3 ~~~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l~G 81 (176)
T PRK03578 3 SLKDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLRG 81 (176)
T ss_pred CCCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhcC
Confidence 456899999999986 688999999999999999999742 12468999999999999999999987754
No 52
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.60 E-value=2.9e-15 Score=104.28 Aligned_cols=67 Identities=25% Similarity=0.482 Sum_probs=59.5
Q ss_pred CccCccchhccCCC--CCHHHHHHHHHHHHHHhCCCCCCC---------hHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278 8 TGRSLYEVLRVEPM--TTISEIKTTYRSLAKVYHPDLSGN---------SQDFIKIHNIYETLSDPTTRAVYDMSLVS 74 (107)
Q Consensus 8 ~~~~~Y~iLgv~~~--a~~~~Ik~ayr~l~~~~hPD~~~~---------~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 74 (107)
...|||++|||++. .+..+|+++|+++++++|||+... .+.+..||+||++|++|.+|..|+..+.+
T Consensus 2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~g 79 (173)
T PRK00294 2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALSG 79 (173)
T ss_pred CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhcC
Confidence 36899999999998 578999999999999999999743 23689999999999999999999988754
No 53
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.57 E-value=3.8e-15 Score=97.40 Aligned_cols=52 Identities=21% Similarity=0.351 Sum_probs=49.6
Q ss_pred ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcC
Q 044278 9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQDFIKIHNIYETLS 60 (107)
Q Consensus 9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~ 60 (107)
..++|+||||+++++.++|+++|++|++++|||++++...|++|++||++|.
T Consensus 64 ~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgGs~~~~~kIneAyevL~ 115 (116)
T PTZ00100 64 KSEAYKILNISPTASKERIREAHKQLMLRNHPDNGGSTYIASKVNEAKDLLL 115 (116)
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Confidence 4689999999999999999999999999999999988899999999999985
No 54
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=4.1e-15 Score=115.06 Aligned_cols=66 Identities=26% Similarity=0.436 Sum_probs=62.4
Q ss_pred ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCC---CChHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278 9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLS---GNSQDFIKIHNIYETLSDPTTRAVYDMSLVS 74 (107)
Q Consensus 9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~---~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 74 (107)
.+|+|.||||+.+++.++||+.||+++..+||||+ .+++.|+.|+.||++|+|+.+|..||..+..
T Consensus 234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~~k 302 (490)
T KOG0720|consen 234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDLELKK 302 (490)
T ss_pred CCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHHHHHH
Confidence 68999999999999999999999999999999999 4677999999999999999999999988765
No 55
>PHA02624 large T antigen; Provisional
Probab=99.55 E-value=4e-15 Score=119.29 Aligned_cols=66 Identities=18% Similarity=0.447 Sum_probs=62.7
Q ss_pred CCCCCCccCccchhccCCCC--CHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchhHHHH
Q 044278 3 VMAQGTGRSLYEVLRVEPMT--TISEIKTTYRSLAKVYHPDLSGNSQDFIKIHNIYETLSDPTTRAVY 68 (107)
Q Consensus 3 ~~~~~~~~~~Y~iLgv~~~a--~~~~Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~Y 68 (107)
+|+.....++|+||||+++| +.++||+|||++++++|||++++.++|+.|++||++|+|+.+|..|
T Consensus 4 ~Ltree~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGdeekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 4 TLSREESKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGDEEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred hhchHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCcHHHHHHHHHHHHHHhcHHHhhhc
Confidence 46677788999999999999 9999999999999999999999999999999999999999999998
No 56
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=4e-15 Score=108.50 Aligned_cols=69 Identities=38% Similarity=0.549 Sum_probs=62.9
Q ss_pred CccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCCh---HHHHHHHHHHHHcCCchhHHHHHHHhhhhc
Q 044278 8 TGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNS---QDFIKIHNIYETLSDPTTRAVYDMSLVSRR 76 (107)
Q Consensus 8 ~~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~---~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 76 (107)
+..|||+||||.+.++..+|.+|||+|++++|||++.+. +.|..|-.||++|.|...|..||-.+....
T Consensus 31 G~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt~ydyaldhpd 102 (329)
T KOG0722|consen 31 GAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRTQYDYALDHPD 102 (329)
T ss_pred cchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHHhHHHHhcCch
Confidence 578999999999999999999999999999999998543 489999999999999999999998886644
No 57
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=6.4e-14 Score=107.84 Aligned_cols=71 Identities=31% Similarity=0.501 Sum_probs=63.4
Q ss_pred CCCccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCCh-----HHHHHHHHHHHHcCCchhHHHHHHHhhhhc
Q 044278 6 QGTGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNS-----QDFIKIHNIYETLSDPTTRAVYDMSLVSRR 76 (107)
Q Consensus 6 ~~~~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~-----~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 76 (107)
.+..++||.||||.+.++..+|+++|+++++.+|||++... .+|++|-+||.||+||.+|..||.......
T Consensus 369 kSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg~dle~ 444 (486)
T KOG0550|consen 369 KSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQDLEE 444 (486)
T ss_pred HhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccccchhh
Confidence 34578999999999999999999999999999999998544 379999999999999999999997765533
No 58
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=2.9e-13 Score=98.02 Aligned_cols=65 Identities=37% Similarity=0.647 Sum_probs=59.8
Q ss_pred ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCCh-----HHHHHHHHHHHHcCCchhHHHHHHHhh
Q 044278 9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNS-----QDFIKIHNIYETLSDPTTRAVYDMSLV 73 (107)
Q Consensus 9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~-----~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 73 (107)
..++|+||+|.+.|+..+|++||+++++++|||+++.. .+|.+|.+||++|+|+.+|..||.++.
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~ 71 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGE 71 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCc
Confidence 46999999999999999999999999999999997544 369999999999999999999999997
No 59
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.41 E-value=2.8e-13 Score=99.91 Aligned_cols=54 Identities=31% Similarity=0.383 Sum_probs=48.2
Q ss_pred CccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCC-----------ChHHHHHHHHHHHHcCC
Q 044278 8 TGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSG-----------NSQDFIKIHNIYETLSD 61 (107)
Q Consensus 8 ~~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~-----------~~~~f~~i~~Ay~~L~d 61 (107)
...++|+||||++++|.++||++||+|+++||||+.. +.++|+.|++||++|+.
T Consensus 198 ~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 198 TLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred cHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 3479999999999999999999999999999999962 13589999999999974
No 60
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=99.40 E-value=6.1e-13 Score=92.65 Aligned_cols=64 Identities=23% Similarity=0.310 Sum_probs=57.2
Q ss_pred cCccchhccCCC--CCHHHHHHHHHHHHHHhCCCCCCCh---------HHHHHHHHHHHHcCCchhHHHHHHHhh
Q 044278 10 RSLYEVLRVEPM--TTISEIKTTYRSLAKVYHPDLSGNS---------QDFIKIHNIYETLSDPTTRAVYDMSLV 73 (107)
Q Consensus 10 ~~~Y~iLgv~~~--a~~~~Ik~ayr~l~~~~hPD~~~~~---------~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 73 (107)
.|||++|||++. .+...|+++|+.|.+.+|||+.... +....||+||.+|+||.+|..|=..+.
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~ 76 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALN 76 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhc
Confidence 599999999987 7999999999999999999997321 257899999999999999999988775
No 61
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.26 E-value=5.5e-12 Score=98.14 Aligned_cols=69 Identities=28% Similarity=0.420 Sum_probs=62.4
Q ss_pred ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC---------hHHHHHHHHHHHHcCCchhHHHHHHHhhhhcc
Q 044278 9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN---------SQDFIKIHNIYETLSDPTTRAVYDMSLVSRRR 77 (107)
Q Consensus 9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---------~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~ 77 (107)
.-|+|+||||+.+++..+||++||+|+.++||||.+. ++.+..|++||..|+|...|..|-.+|.....
T Consensus 97 ~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd~p 174 (610)
T COG5407 97 GFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPDSP 174 (610)
T ss_pred CCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCCCC
Confidence 4689999999999999999999999999999999855 34899999999999999999999999876443
No 62
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=8.7e-12 Score=88.32 Aligned_cols=64 Identities=27% Similarity=0.442 Sum_probs=57.5
Q ss_pred CCCCccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCCh-----HHHHHHHHHHHHcCCchhHHHH
Q 044278 5 AQGTGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNS-----QDFIKIHNIYETLSDPTTRAVY 68 (107)
Q Consensus 5 ~~~~~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~-----~~f~~i~~Ay~~L~d~~~R~~Y 68 (107)
+.+.+.|+|+||.|.|..+.++|++.||+|+...|||+|+++ .+|--|..||..|-++..|..-
T Consensus 48 styfnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~ 116 (250)
T KOG1150|consen 48 STYFNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRC 116 (250)
T ss_pred ccccccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 445789999999999999999999999999999999999876 3799999999999999866543
No 63
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=99.22 E-value=3.6e-11 Score=82.58 Aligned_cols=53 Identities=32% Similarity=0.530 Sum_probs=46.7
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCC---------hHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278 22 TTISEIKTTYRSLAKVYHPDLSGN---------SQDFIKIHNIYETLSDPTTRAVYDMSLVS 74 (107)
Q Consensus 22 a~~~~Ik~ayr~l~~~~hPD~~~~---------~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 74 (107)
.+..+|+++|+++++++|||+... ...+..||+||++|+||.+|..|...+.+
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~g 64 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLHG 64 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhcC
Confidence 478899999999999999998632 24799999999999999999999998863
No 64
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=1.2e-10 Score=85.93 Aligned_cols=68 Identities=25% Similarity=0.313 Sum_probs=59.3
Q ss_pred CCccCccchhccCCC---CCHHHHHHHHHHHHHHhCCCCC------CChHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278 7 GTGRSLYEVLRVEPM---TTISEIKTTYRSLAKVYHPDLS------GNSQDFIKIHNIYETLSDPTTRAVYDMSLVS 74 (107)
Q Consensus 7 ~~~~~~Y~iLgv~~~---a~~~~Ik~ayr~l~~~~hPD~~------~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 74 (107)
+...|+|.+|||+.- ++..+|.++.++.+.+||||+. +..+-|.+|+.||+||+|+..|..||...-.
T Consensus 40 Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~df~ 116 (379)
T COG5269 40 WKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSNDFD 116 (379)
T ss_pred hhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccccccc
Confidence 346899999999864 7899999999999999999997 3467899999999999999999999975543
No 65
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=6.7e-09 Score=75.46 Aligned_cols=80 Identities=23% Similarity=0.428 Sum_probs=63.0
Q ss_pred cCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCC---ChHHHHHHHHHHH-HcCCc--------------hhHHHHHHH
Q 044278 10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSG---NSQDFIKIHNIYE-TLSDP--------------TTRAVYDMS 71 (107)
Q Consensus 10 ~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~---~~~~f~~i~~Ay~-~L~d~--------------~~R~~Yd~~ 71 (107)
+.||.||||..+++.++++.+|..|++.+|||.+. +.+.|..|.+||. ||+.. .--..||-.
T Consensus 47 ~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~~~~ktn~~qn~~edee~~~efdik 126 (342)
T KOG0568|consen 47 MECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQEKFAKTNARQNIGEDEEDAEEFDIK 126 (342)
T ss_pred HHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHHHHHHhhhccccccchhhHHHhhhc
Confidence 47999999999999999999999999999999984 4568999999998 66532 222346666
Q ss_pred hhhhcccCCCCCCCCCCC
Q 044278 72 LVSRRRTRTASFGCLGRS 89 (107)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~ 89 (107)
.....++.+-+|.+.|.+
T Consensus 127 ~kapqhrhyls~egig~g 144 (342)
T KOG0568|consen 127 HKAPQHRHYLSFEGIGFG 144 (342)
T ss_pred cCCchhhhhhcccCcccC
Confidence 666666677777766655
No 66
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=3.5e-08 Score=63.43 Aligned_cols=50 Identities=26% Similarity=0.298 Sum_probs=46.3
Q ss_pred cchhccCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCc
Q 044278 13 YEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQDFIKIHNIYETLSDP 62 (107)
Q Consensus 13 Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~ 62 (107)
-.||||++.++.+.||+++|++....|||+++..=.-.+||+|+++|...
T Consensus 59 ~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSPYlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 59 ALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSPYLASKINEAKDLLEGT 108 (112)
T ss_pred HHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCHHHHHHHHHHHHHHhcc
Confidence 35999999999999999999999999999999988889999999999743
No 67
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=3.4e-07 Score=77.85 Aligned_cols=50 Identities=32% Similarity=0.505 Sum_probs=43.9
Q ss_pred CccchhccCCC----CCHHHHHHHHHHHHHHhCCCCCCC-hHHHHHHHHHHHHcC
Q 044278 11 SLYEVLRVEPM----TTISEIKTTYRSLAKVYHPDLSGN-SQDFIKIHNIYETLS 60 (107)
Q Consensus 11 ~~Y~iLgv~~~----a~~~~Ik~ayr~l~~~~hPD~~~~-~~~f~~i~~Ay~~L~ 60 (107)
+-|+||.|+-+ -..++||++|++|+.+|||||++. -++|..+|+||+.|+
T Consensus 1282 ~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPEGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1282 LAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPEGREMFERVNKAYELLS 1336 (2235)
T ss_pred HHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHH
Confidence 67999999854 245889999999999999999975 569999999999998
No 68
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=2e-06 Score=58.91 Aligned_cols=69 Identities=26% Similarity=0.500 Sum_probs=57.1
Q ss_pred CCCccCccchhccCCC--CCHHHHHHHHHHHHHHhCCCCC---------CChHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278 6 QGTGRSLYEVLRVEPM--TTISEIKTTYRSLAKVYHPDLS---------GNSQDFIKIHNIYETLSDPTTRAVYDMSLVS 74 (107)
Q Consensus 6 ~~~~~~~Y~iLgv~~~--a~~~~Ik~ayr~l~~~~hPD~~---------~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 74 (107)
-+.+.+||.+||.... .+.+.+...|....+++|||+. .+.+....|++||.+|.||..|+.|=..+..
T Consensus 4 ~~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilkl~g 83 (168)
T KOG3192|consen 4 MGSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLKLKG 83 (168)
T ss_pred cchHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhC
Confidence 3557899999987544 5777788899999999999985 2345799999999999999999999877755
No 69
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.00017 Score=50.08 Aligned_cols=50 Identities=30% Similarity=0.449 Sum_probs=43.2
Q ss_pred cCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCC-----------ChHHHHHHHHHHHHc
Q 044278 10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSG-----------NSQDFIKIHNIYETL 59 (107)
Q Consensus 10 ~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~-----------~~~~f~~i~~Ay~~L 59 (107)
.+.|.+|++.......+|+++|+.+....|||+.. ..++++.|++||+.+
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 68899999999999999999999999999999852 234788888888754
No 70
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.00027 Score=49.14 Aligned_cols=63 Identities=30% Similarity=0.546 Sum_probs=51.5
Q ss_pred CccchhccCCCC--CHHHHHHHHHHHHHHhCCCCCCCh---------HHHHHHHHHHHHcCCchhHHHHHHHhh
Q 044278 11 SLYEVLRVEPMT--TISEIKTTYRSLAKVYHPDLSGNS---------QDFIKIHNIYETLSDPTTRAVYDMSLV 73 (107)
Q Consensus 11 ~~Y~iLgv~~~a--~~~~Ik~ayr~l~~~~hPD~~~~~---------~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 73 (107)
+++..+|..+.. ..+.++..|+.+.+.+|||+.... +.+..++.||.+|.+|..|..|=....
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~ 75 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALA 75 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhc
Confidence 466667776654 567789999999999999998432 368899999999999999999987665
No 71
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=97.05 E-value=0.0018 Score=43.17 Aligned_cols=52 Identities=23% Similarity=0.263 Sum_probs=40.5
Q ss_pred ccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCch
Q 044278 12 LYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQDFIKIHNIYETLSDPT 63 (107)
Q Consensus 12 ~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~ 63 (107)
-..||||++..+.++|.+.|.+|-...+|++++..=.-..|..|.+.|..+.
T Consensus 60 A~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGSfYLQSKV~rAKErl~~El 111 (127)
T PF03656_consen 60 ARQILNVKEELSREEIQKRYKHLFKANDPSKGGSFYLQSKVFRAKERLEQEL 111 (127)
T ss_dssp HHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCCHHHHHHHHHHHHHHHHHH
Confidence 4589999999999999999999999999999988777788999999887544
No 72
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=96.58 E-value=0.002 Score=51.01 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=21.1
Q ss_pred CCHHHHHHHHHHHHHHhCCCCC
Q 044278 22 TTISEIKTTYRSLAKVYHPDLS 43 (107)
Q Consensus 22 a~~~~Ik~ayr~l~~~~hPD~~ 43 (107)
++.++||++||+.++.+||||.
T Consensus 400 Vtp~~VKKaYrKA~L~VHPDKl 421 (453)
T KOG0431|consen 400 VTPAQVKKAYRKAVLCVHPDKL 421 (453)
T ss_pred cCHHHHHHHHHhhhheeCcccc
Confidence 6899999999999999999997
No 73
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=93.70 E-value=0.21 Score=35.49 Aligned_cols=38 Identities=18% Similarity=0.336 Sum_probs=32.9
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcC
Q 044278 19 EPMTTISEIKTTYRSLAKVYHPDLSGNSQDFIKIHNIYETLS 60 (107)
Q Consensus 19 ~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~ 60 (107)
+++|+.+||.+|+.++..+| .++.+.-..|..||+.|.
T Consensus 1 S~~ASfeEIq~Arn~ll~~y----~gd~~~~~~IEaAYD~IL 38 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQY----AGDEKSREAIEAAYDAIL 38 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHH
Confidence 57899999999999999998 456678899999998865
No 74
>PF13446 RPT: A repeated domain in UCH-protein
Probab=92.68 E-value=0.32 Score=27.90 Aligned_cols=44 Identities=16% Similarity=0.253 Sum_probs=33.5
Q ss_pred cCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcC
Q 044278 10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQDFIKIHNIYETLS 60 (107)
Q Consensus 10 ~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~ 60 (107)
..-|++|||++..+.+.|-.+|+.... -.| .....+.+|..+|.
T Consensus 5 ~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~-~~P------~~~~~~r~AL~~Ia 48 (62)
T PF13446_consen 5 EEAYEILGIDEDTDDDFIISAFQSKVN-DDP------SQKDTLREALRVIA 48 (62)
T ss_pred HHHHHHhCcCCCCCHHHHHHHHHHHHH-cCh------HhHHHHHHHHHHHH
Confidence 457999999999999999999998887 222 35555666666665
No 75
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=90.91 E-value=0.31 Score=36.78 Aligned_cols=49 Identities=27% Similarity=0.443 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCC--------ChHHHHHHHHHHHHcCCchhHHHHHH
Q 044278 22 TTISEIKTTYRSLAKVYHPDLSG--------NSQDFIKIHNIYETLSDPTTRAVYDM 70 (107)
Q Consensus 22 a~~~~Ik~ayr~l~~~~hPD~~~--------~~~~f~~i~~Ay~~L~d~~~R~~Yd~ 70 (107)
++...|+.+|+..++.+||++.. ..+.+++|.+||.+|++...|...|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~ 60 (335)
T KOG0724|consen 4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDS 60 (335)
T ss_pred ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhh
Confidence 56788999999999999999873 23468999999999998655444443
No 76
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=90.16 E-value=0.5 Score=30.73 Aligned_cols=42 Identities=17% Similarity=0.353 Sum_probs=29.5
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCChH--------HHHHHHHHHHHcCC
Q 044278 20 PMTTISEIKTTYRSLAKVYHPDLSGNSQ--------DFIKIHNIYETLSD 61 (107)
Q Consensus 20 ~~a~~~~Ik~ayr~l~~~~hPD~~~~~~--------~f~~i~~Ay~~L~d 61 (107)
+..+..+++.+.|.+-+++|||...... -++.|+.-.+.|..
T Consensus 4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~ 53 (112)
T PF14687_consen 4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKK 53 (112)
T ss_pred hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhc
Confidence 3457788999999999999999875443 35555554444443
No 77
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.13 E-value=2.8 Score=27.88 Aligned_cols=49 Identities=22% Similarity=0.240 Sum_probs=39.7
Q ss_pred cchhccCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCC
Q 044278 13 YEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQDFIKIHNIYETLSD 61 (107)
Q Consensus 13 Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d 61 (107)
-.||+|++.-+.++|.+.|..|-....+.+++..=.-..|-.|-+.|..
T Consensus 62 ~qILnV~~~ln~eei~k~yehLFevNdkskGGSFYLQSKVfRAkErld~ 110 (132)
T KOG3442|consen 62 QQILNVKEPLNREEIEKRYEHLFEVNDKSKGGSFYLQSKVFRAKERLDE 110 (132)
T ss_pred hhHhCCCCCCCHHHHHHHHHHHHhccCcccCcceeehHHHHHHHHHHHH
Confidence 4799999999999999999999999988877765555566667776653
No 78
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=69.55 E-value=4.6 Score=16.42 Aligned_cols=13 Identities=54% Similarity=0.828 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHcC
Q 044278 48 DFIKIHNIYETLS 60 (107)
Q Consensus 48 ~f~~i~~Ay~~L~ 60 (107)
.|..|..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 4677778887764
No 79
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=67.54 E-value=25 Score=21.39 Aligned_cols=34 Identities=15% Similarity=0.267 Sum_probs=27.0
Q ss_pred cCccchhccCCCCCHHHHHHHHHHHHHHhCCCCC
Q 044278 10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLS 43 (107)
Q Consensus 10 ~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~ 43 (107)
+|--+++|+.|-++..+|+.+-++.++++.=-..
T Consensus 3 RNIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~ 36 (88)
T COG5552 3 RNIKELFNFDPPATPVEVRDAALQFVRKLSGTTH 36 (88)
T ss_pred cchHHHhCCCCCCCcHHHHHHHHHHHHHhcCCCC
Confidence 3556789999999999999998888887744433
No 80
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=57.73 E-value=31 Score=21.44 Aligned_cols=48 Identities=23% Similarity=0.519 Sum_probs=31.0
Q ss_pred ccCCCC-CHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchhHHHHH
Q 044278 17 RVEPMT-TISEIKTTYRSLAKVYHPDLSGNSQDFIKIHNIYETLSDPTTRAVYD 69 (107)
Q Consensus 17 gv~~~a-~~~~Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 69 (107)
||+|++ ..-+|-+.+..++..+++ .+.+.+..|...| +.||.-+..||
T Consensus 51 g~~p~s~evq~l~~~~~~~~~~~~~---~~~~~~~~l~~~y--~~~~~~~~~~~ 99 (118)
T PF07739_consen 51 GVDPDSPEVQELAERWMELINQFTG---GDPELLRGLAQMY--VEDPRFAAMYD 99 (118)
T ss_dssp T--TT-HHHHHHHHHHHHHHHHSS------HHHHHHHHHHT--TSTHHHHHHHG
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHhC---CCHHHHHHHHHHH--HcCHHHHhhcc
Confidence 455654 344466677777776666 4667888888888 78888888888
No 81
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=47.64 E-value=29 Score=16.93 Aligned_cols=18 Identities=22% Similarity=0.333 Sum_probs=14.9
Q ss_pred CHHHHHHHHHHHHHHhCC
Q 044278 23 TISEIKTTYRSLAKVYHP 40 (107)
Q Consensus 23 ~~~~Ik~ayr~l~~~~hP 40 (107)
..++.+.+.|+.++.||-
T Consensus 9 ~~~~~r~~lR~AALeYHe 26 (28)
T PF12434_consen 9 NKEDKRAQLRQAALEYHE 26 (28)
T ss_pred chHHHHHHHHHHHHHhcc
Confidence 457788999999999983
No 82
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=43.16 E-value=17 Score=29.49 Aligned_cols=35 Identities=23% Similarity=0.326 Sum_probs=26.3
Q ss_pred CCCCCCccCccchhcc-----------CCCCCHHHHHHHHHHHHHH
Q 044278 3 VMAQGTGRSLYEVLRV-----------EPMTTISEIKTTYRSLAKV 37 (107)
Q Consensus 3 ~~~~~~~~~~Y~iLgv-----------~~~a~~~~Ik~ayr~l~~~ 37 (107)
+|+.+.++--|+++|. .+..+.++||+-|.+|.+.
T Consensus 64 VLsDp~kRaIYD~~G~qGL~t~gwEl~~r~~tpeEIreE~Erl~r~ 109 (546)
T KOG0718|consen 64 VLSDPQKRAIYDNYGEQGLKTEGWELGFRGKTPEEIREEYERLQRE 109 (546)
T ss_pred HhcChHHHHHHHHhhhccccccCceeecCCCCHHHHHHHHHHHHHH
Confidence 4566667777888774 3568999999999877654
No 83
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=41.26 E-value=25 Score=22.21 Aligned_cols=21 Identities=38% Similarity=0.450 Sum_probs=17.8
Q ss_pred hhccCCCCCHHHHHHHHHHHH
Q 044278 15 VLRVEPMTTISEIKTTYRSLA 35 (107)
Q Consensus 15 iLgv~~~a~~~~Ik~ayr~l~ 35 (107)
+|-|++.|+..+|++|...+-
T Consensus 25 vF~V~~~AtK~~IK~AvE~lF 45 (94)
T COG0089 25 VFIVDPDATKPEIKAAVEELF 45 (94)
T ss_pred EEEECCCCCHHHHHHHHHHHh
Confidence 577899999999999987663
No 84
>cd01780 PLC_epsilon_RA Ubiquitin-like domain of Phosphatidylinositide-specific phospholipase. PLC_epsilon_RA Phosphatidylinositide-specific phospholipase C (PLC) is a signaling enzyme that hydrolyzes membrane phospholipids to generate inositol triphosphate. PLC-epsilon represents a novel forth class of PLC that has a PLC catalytic core domain, a CDC25 guanine nucleotide exchange factor domain and two RA (Ras-association) domains of which the second is critical for Ras activation of the enzyme.
Probab=38.65 E-value=38 Score=21.38 Aligned_cols=35 Identities=20% Similarity=0.278 Sum_probs=24.5
Q ss_pred ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCC
Q 044278 9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLS 43 (107)
Q Consensus 9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~ 43 (107)
+-.+|.||.++..+|..+|-+.-...+++-+||.+
T Consensus 10 ~dqP~~il~a~~~STa~Dvi~Qal~KA~rs~~~~~ 44 (93)
T cd01780 10 PDQPYAILRAPRVSTAQDVIQQTLCKARRSNPNPS 44 (93)
T ss_pred CCCCeeEEEccccccHHHHHHHHHHHhccCCCCcc
Confidence 56789999999998877765554444455566654
No 85
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=37.34 E-value=82 Score=18.02 Aligned_cols=42 Identities=14% Similarity=0.084 Sum_probs=30.5
Q ss_pred HHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchhHHHHHHH
Q 044278 29 TTYRSLAKVYHPDLSGNSQDFIKIHNIYETLSDPTTRAVYDMS 71 (107)
Q Consensus 29 ~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~ 71 (107)
+..+...+.-||+. ...+..+.|.+.+..|++..+...++..
T Consensus 14 ~~~r~~~~~~~p~~-~~~eisk~l~~~Wk~ls~~eK~~y~~~a 55 (72)
T cd01388 14 KRHRRKVLQEYPLK-ENRAISKILGDRWKALSNEEKQPYYEEA 55 (72)
T ss_pred HHHHHHHHHHCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44566667789985 4566788999999999977766555443
No 86
>CHL00030 rpl23 ribosomal protein L23
Probab=36.39 E-value=33 Score=21.46 Aligned_cols=21 Identities=24% Similarity=0.199 Sum_probs=17.7
Q ss_pred hhccCCCCCHHHHHHHHHHHH
Q 044278 15 VLRVEPMTTISEIKTTYRSLA 35 (107)
Q Consensus 15 iLgv~~~a~~~~Ik~ayr~l~ 35 (107)
+|-|++.|+..+||+|...+-
T Consensus 23 ~F~V~~~anK~eIK~avE~lf 43 (93)
T CHL00030 23 TFDVDSGSTKTEIKHWIELFF 43 (93)
T ss_pred EEEECCCCCHHHHHHHHHHHh
Confidence 567899999999999987763
No 87
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=32.94 E-value=1.6e+02 Score=21.20 Aligned_cols=60 Identities=15% Similarity=0.065 Sum_probs=46.2
Q ss_pred hhccCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278 15 VLRVEPMTTISEIKTTYRSLAKVYHPDLSGNSQDFIKIHNIYETLSDPTTRAVYDMSLVS 74 (107)
Q Consensus 15 iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 74 (107)
+.|+....+.++|.+..=.|+..+|.|--=..++-..|..=|+++.+|.....|+....-
T Consensus 2 L~GC~~~~~t~~iC~~nP~LC~dLn~Dg~Cr~eRtdLI~~Ry~~~~~pt~~~ky~~l~~l 61 (203)
T PF11207_consen 2 LSGCFENPNTEQICENNPELCEDLNDDGWCRYERTDLIWHRYELKKNPTDKNKYQLLEAL 61 (203)
T ss_pred CcCcCCCCCHHHHHccCHHHHHHhCcchhhccHhHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 457777789999999999999999966544456777788888888888888877766543
No 88
>PF09938 DUF2170: Uncharacterized protein conserved in bacteria (DUF2170); InterPro: IPR019231 This family of various hypothetical prokaryotic proteins has no known function.
Probab=32.15 E-value=59 Score=21.96 Aligned_cols=30 Identities=17% Similarity=0.357 Sum_probs=23.4
Q ss_pred CccCccchhc-cCCCCCHHHHHHHHHHHHHH
Q 044278 8 TGRSLYEVLR-VEPMTTISEIKTTYRSLAKV 37 (107)
Q Consensus 8 ~~~~~Y~iLg-v~~~a~~~~Ik~ayr~l~~~ 37 (107)
...+||.++| ++..++.+.|-.--..|+..
T Consensus 97 ~g~~~Yv~FGALS~~S~l~~I~~Ei~tLa~N 127 (140)
T PF09938_consen 97 DGEDYYVAFGALSAQSSLEDIVIEIETLADN 127 (140)
T ss_pred cCcEEEEEeeeecccCCHHHHHHHHHHHHHH
Confidence 6899999999 67788888887766666543
No 89
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=32.06 E-value=65 Score=23.88 Aligned_cols=34 Identities=15% Similarity=0.464 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCch
Q 044278 24 ISEIKTTYRSLAKVYHPDLSGNSQDFIKIHNIYETLSDPT 63 (107)
Q Consensus 24 ~~~Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~ 63 (107)
.+.|...+.+++..+.|+ .|..|.+||..|++..
T Consensus 181 ~~~ld~~l~~~~~~Fd~~------~Y~~v~~AY~lLgk~~ 214 (291)
T PF10475_consen 181 EEQLDSDLSKVCQDFDPD------KYSKVQEAYQLLGKTQ 214 (291)
T ss_pred HHHHHHHHHHHHHhCCHH------HHHHHHHHHHHHhhhH
Confidence 345566667777766544 8999999999999643
No 90
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=31.82 E-value=46 Score=20.10 Aligned_cols=20 Identities=25% Similarity=0.310 Sum_probs=17.3
Q ss_pred hhccCCCCCHHHHHHHHHHH
Q 044278 15 VLRVEPMTTISEIKTTYRSL 34 (107)
Q Consensus 15 iLgv~~~a~~~~Ik~ayr~l 34 (107)
+|-|++.|+..+||+|...+
T Consensus 18 ~F~V~~~anK~eIK~avE~l 37 (77)
T TIGR03636 18 TFIVDRKATKGDIKRAVEKL 37 (77)
T ss_pred EEEECCCCCHHHHHHHHHHH
Confidence 46789999999999998776
No 91
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=29.57 E-value=51 Score=20.45 Aligned_cols=21 Identities=38% Similarity=0.450 Sum_probs=17.3
Q ss_pred hhccCCCCCHHHHHHHHHHHH
Q 044278 15 VLRVEPMTTISEIKTTYRSLA 35 (107)
Q Consensus 15 iLgv~~~a~~~~Ik~ayr~l~ 35 (107)
+|-|++.++..+||++...+-
T Consensus 24 ~F~V~~~a~K~eIK~aie~lf 44 (92)
T PRK05738 24 VFEVAPDATKPEIKAAVEKLF 44 (92)
T ss_pred EEEECCCCCHHHHHHHHHHHc
Confidence 467889999999999887663
No 92
>PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include haem in the oxygen sensor FixL [], FAD in the redox potential sensor NifL [], and a 4-hydroxycinnamyl chromophore in photoactive yellow protein []. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses [].; GO: 0005515 protein binding; PDB: 3NJA_D 3H9W_A 3GDI_B 3ICY_A 3EEH_A 3MR0_B.
Probab=29.41 E-value=16 Score=21.15 Aligned_cols=30 Identities=30% Similarity=0.588 Sum_probs=19.4
Q ss_pred ccCccchhccCCCCCHHHH-HHHHHHHHHHhCCCC
Q 044278 9 GRSLYEVLRVEPMTTISEI-KTTYRSLAKVYHPDL 42 (107)
Q Consensus 9 ~~~~Y~iLgv~~~a~~~~I-k~ayr~l~~~~hPD~ 42 (107)
..++++|||+++ +++ ......+....|||-
T Consensus 5 s~~~~~i~G~~~----~~~~~~~~~~~~~~ihpdD 35 (91)
T PF08447_consen 5 SDNFYEIFGYSP----EEIGKPDFEEWLERIHPDD 35 (91)
T ss_dssp -THHHHHHTS-H----HHHTCBEHHHHHHHB-TTT
T ss_pred eHHHHHHhCCCH----HHhccCCHHHHHhhcCHHH
Confidence 357889999865 445 445666778899994
No 93
>KOG2320 consensus RAS effector RIN1 (contains VPS domain) [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.54 E-value=58 Score=27.29 Aligned_cols=35 Identities=9% Similarity=0.283 Sum_probs=25.9
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH
Q 044278 19 EPMTTISEIKTTYRSLAKVYHPDLSGNSQDFIKIHNIYET 58 (107)
Q Consensus 19 ~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~ 58 (107)
+..+..++||.++..+.+.|||.+ +...+.+|.+.
T Consensus 398 Ps~~~mEqvk~k~~~m~r~YSP~k-----kl~~Llk~ckL 432 (651)
T KOG2320|consen 398 PSDVLMEQVKQKFTAMQRRYSPSK-----KLHALLKACKL 432 (651)
T ss_pred CcHHHHHHHHHHHHHHHHhhChHH-----HHHHHHHHHHH
Confidence 444678889999999999999986 44555554443
No 94
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=27.80 E-value=39 Score=25.32 Aligned_cols=13 Identities=31% Similarity=0.577 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHcC
Q 044278 48 DFIKIHNIYETLS 60 (107)
Q Consensus 48 ~f~~i~~Ay~~L~ 60 (107)
+.++||+|+++|+
T Consensus 129 RLkKVNEAFE~LK 141 (284)
T KOG3960|consen 129 RLKKVNEAFETLK 141 (284)
T ss_pred HHHHHHHHHHHHH
Confidence 6899999999984
No 95
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=27.59 E-value=1.1e+02 Score=16.60 Aligned_cols=39 Identities=15% Similarity=0.146 Sum_probs=27.0
Q ss_pred HHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchhHHHHHH
Q 044278 31 YRSLAKVYHPDLSGNSQDFIKIHNIYETLSDPTTRAVYDM 70 (107)
Q Consensus 31 yr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~ 70 (107)
.+...+.-||+. ...+..+.|.+.|..|++..+....+.
T Consensus 15 ~r~~~~~~~p~~-~~~~i~~~~~~~W~~ls~~eK~~y~~~ 53 (66)
T cd01390 15 QRPKLKKENPDA-SVTEVTKILGEKWKELSEEEKKKYEEK 53 (66)
T ss_pred HHHHHHHHCcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 455556678883 456678999999999996555444443
No 96
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=26.13 E-value=41 Score=20.05 Aligned_cols=27 Identities=15% Similarity=0.217 Sum_probs=21.5
Q ss_pred hhccCCCCCHHHHHHHHHHHHHHhCCC
Q 044278 15 VLRVEPMTTISEIKTTYRSLAKVYHPD 41 (107)
Q Consensus 15 iLgv~~~a~~~~Ik~ayr~l~~~~hPD 41 (107)
|+.++.+.+.++||+.|.++.....|-
T Consensus 6 i~~Lh~G~~~e~vk~~F~~~~~~Vs~~ 32 (71)
T PF04282_consen 6 IKRLHEGEDPEEVKEEFKKLFSDVSAS 32 (71)
T ss_pred HHHHhCCCCHHHHHHHHHHHHCCCCHH
Confidence 455778889999999999988877554
No 97
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=24.67 E-value=1.7e+02 Score=17.77 Aligned_cols=33 Identities=15% Similarity=0.090 Sum_probs=26.0
Q ss_pred CccchhccCCCCCHHHHHHHHHHHHHHhCCCCC
Q 044278 11 SLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLS 43 (107)
Q Consensus 11 ~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~ 43 (107)
|--.+.|+.|-++.++|..|=.+.+++..=-..
T Consensus 4 nI~~L~~fePpaT~~EI~aAAlQyVRKvSG~~~ 36 (78)
T PF10041_consen 4 NIKTLRNFEPPATDEEIRAAALQYVRKVSGFRK 36 (78)
T ss_pred chhhhcCCCCCCCHHHHHHHHHHHHHHHccCCC
Confidence 344567888999999999999999988854443
No 98
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=24.52 E-value=27 Score=19.52 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=13.5
Q ss_pred chhccCCCCCHHHHHHHHHHHH
Q 044278 14 EVLRVEPMTTISEIKTTYRSLA 35 (107)
Q Consensus 14 ~iLgv~~~a~~~~Ik~ayr~l~ 35 (107)
+.|||++.+-...|+++-+++.
T Consensus 31 ~~lgis~st~~~~LRrae~kli 52 (53)
T PF04967_consen 31 EELGISKSTVSEHLRRAERKLI 52 (53)
T ss_pred HHhCCCHHHHHHHHHHHHHHHh
Confidence 3566666665666666666654
No 99
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=24.50 E-value=72 Score=19.58 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=17.6
Q ss_pred hhccCCCCCHHHHHHHHHHHH
Q 044278 15 VLRVEPMTTISEIKTTYRSLA 35 (107)
Q Consensus 15 iLgv~~~a~~~~Ik~ayr~l~ 35 (107)
.|-|++.|+..+|++|...+-
T Consensus 25 ~F~V~~~anK~eIK~AvE~lf 45 (84)
T PRK14548 25 TFIVDRRATKPDIKRAVEELF 45 (84)
T ss_pred EEEECCCCCHHHHHHHHHHHh
Confidence 467899999999999987763
No 100
>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.
Probab=24.31 E-value=1.5e+02 Score=17.04 Aligned_cols=42 Identities=14% Similarity=0.131 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchhHHHHHH
Q 044278 28 KTTYRSLAKVYHPDLSGNSQDFIKIHNIYETLSDPTTRAVYDM 70 (107)
Q Consensus 28 k~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~ 70 (107)
.+.++..++.-+|+. ...+..+.|.+.|..|++..+....+.
T Consensus 13 ~~~~r~~~~~~~p~~-~~~eisk~~g~~Wk~ls~eeK~~y~~~ 54 (77)
T cd01389 13 RQDKHAQLKTENPGL-TNNEISRIIGRMWRSESPEVKAYYKEL 54 (77)
T ss_pred HHHHHHHHHHHCCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHH
Confidence 456677788889986 455677889999999996555444343
No 101
>PF15178 TOM_sub5: Mitochondrial import receptor subunit TOM5 homolog
Probab=23.65 E-value=1.1e+02 Score=16.91 Aligned_cols=24 Identities=17% Similarity=0.236 Sum_probs=18.8
Q ss_pred cchhccCCCCCHHHHHHHHHHHHH
Q 044278 13 YEVLRVEPMTTISEIKTTYRSLAK 36 (107)
Q Consensus 13 Y~iLgv~~~a~~~~Ik~ayr~l~~ 36 (107)
|.+=|+.|..+.+|.|+.-|+-+.
T Consensus 2 ~~~egl~pk~DPeE~k~kmR~dvi 25 (51)
T PF15178_consen 2 FRIEGLGPKMDPEEMKRKMREDVI 25 (51)
T ss_pred cccccCCCCCCHHHHHHHHHHHHH
Confidence 456789999999999988776443
No 102
>PRK15321 putative type III secretion system effector protein OrgC; Provisional
Probab=23.20 E-value=2.1e+02 Score=18.43 Aligned_cols=36 Identities=14% Similarity=0.339 Sum_probs=28.3
Q ss_pred CCCCCccCccc-----hhccCCCCCHHHHHHHHHHHHHHhC
Q 044278 4 MAQGTGRSLYE-----VLRVEPMTTISEIKTTYRSLAKVYH 39 (107)
Q Consensus 4 ~~~~~~~~~Y~-----iLgv~~~a~~~~Ik~ayr~l~~~~h 39 (107)
++.+...|.|+ +|.+++.++.+.+|.+-.++...+-
T Consensus 10 lsng~~vdlydAF~Q~l~~LP~la~S~~~KD~I~q~m~~F~ 50 (120)
T PRK15321 10 LSNGGDVDLYDAFYQRLLALPESASSETLKDSIYQEMNAFK 50 (120)
T ss_pred cCCCCcchHHHHHHHHHHhCCcccCcHHHHHHHHHHHHHhC
Confidence 55666777764 7889999999999998877777774
No 103
>PF06767 Sif: Sif protein; InterPro: IPR010637 This family consists of several SifA and SifB and SseJ proteins, which seem to be specific to the Salmonella species. SifA, SifB and SseJ have been demonstrated to localise to the Salmonella-containing vacuole (SCV) and to Salmonella-induced filaments (Sifs). Trafficking of SseJ and SifB away from the SCV requires the SPI-2 effector SifA. SseJ trafficking away from the SCV along Sifs is unnecessary for its virulence function [].; PDB: 3HW2_A 3CXB_A.
Probab=23.06 E-value=1.2e+02 Score=23.54 Aligned_cols=40 Identities=15% Similarity=0.249 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchhHHH
Q 044278 28 KTTYRSLAKVYHPDLSGNSQDFIKIHNIYETLSDPTTRAV 67 (107)
Q Consensus 28 k~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~ 67 (107)
.+|..-+...+||+..+..+++..+-.+...|.-|..|..
T Consensus 44 aeA~~cI~eLc~~~~~pT~~~l~~iF~~LKeLAspg~Kd~ 83 (337)
T PF06767_consen 44 AEALECIFELCHPDPPPTRERLEDIFFELKELASPGYKDR 83 (337)
T ss_dssp HHHHHHHHHHHSSSS---HHHHHHHHHHHHHHC-HHHHTT
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcCchhhhc
Confidence 3678888899999999998888888888888988888765
No 104
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=22.72 E-value=81 Score=19.37 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=17.4
Q ss_pred hhccCCCCCHHHHHHHHHHHH
Q 044278 15 VLRVEPMTTISEIKTTYRSLA 35 (107)
Q Consensus 15 iLgv~~~a~~~~Ik~ayr~l~ 35 (107)
.+.|++.++..+||++...+-
T Consensus 24 tF~V~~~atK~~Ik~aie~iy 44 (91)
T PF00276_consen 24 TFEVDPRATKTEIKEAIEKIY 44 (91)
T ss_dssp EEEETTTSTHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHhhc
Confidence 567899999999999887653
No 105
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=22.59 E-value=1.4e+02 Score=15.99 Aligned_cols=42 Identities=14% Similarity=0.190 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchhHHHHHH
Q 044278 28 KTTYRSLAKVYHPDLSGNSQDFIKIHNIYETLSDPTTRAVYDM 70 (107)
Q Consensus 28 k~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~ 70 (107)
...++...+.-||+. ...+....|...|..|++..+....+.
T Consensus 12 ~~~~~~~~~~~~~~~-~~~~i~~~~~~~W~~l~~~~k~~y~~~ 53 (66)
T cd00084 12 SQEHRAEVKAENPGL-SVGEISKILGEMWKSLSEEEKKKYEEK 53 (66)
T ss_pred HHHHHHHHHHHCcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 345566677788883 245578899999999997555444443
No 106
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=22.46 E-value=80 Score=16.96 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=17.4
Q ss_pred hhccCCCCCHHHHHHHHHHHHH
Q 044278 15 VLRVEPMTTISEIKTTYRSLAK 36 (107)
Q Consensus 15 iLgv~~~a~~~~Ik~ayr~l~~ 36 (107)
|=+|+++++.++|+..+.....
T Consensus 3 v~nlp~~~t~~~l~~~f~~~g~ 24 (70)
T PF00076_consen 3 VGNLPPDVTEEELRDFFSQFGK 24 (70)
T ss_dssp EESETTTSSHHHHHHHHHTTST
T ss_pred EcCCCCcCCHHHHHHHHHHhhh
Confidence 4478999999999988876544
No 107
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=21.50 E-value=79 Score=22.71 Aligned_cols=30 Identities=17% Similarity=0.173 Sum_probs=21.6
Q ss_pred CCccCccchhccCCCCCHHHHHHHHHHHHHHh
Q 044278 7 GTGRSLYEVLRVEPMTTISEIKTTYRSLAKVY 38 (107)
Q Consensus 7 ~~~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~ 38 (107)
++..|+-.+|||.-..+.+ ++.|-.|.-+.
T Consensus 34 SPgLdPLtaLGIeArsd~E--RrryAEl~vk~ 63 (200)
T TIGR03759 34 SPGLDPLTALGIEARSDEE--RRRYAELWVKQ 63 (200)
T ss_pred CCCCChhhhhccccCCHHH--HHHHHHHHHHH
Confidence 4567999999998765555 77776666544
No 108
>PF02216 B: B domain; InterPro: IPR003132 This entry represents the immunoglobulin-binding domain found in the Staphylococcus aureus virulence factor protein A (SpA). Protein A contains five highly homologous Ig-binding domains in tandem (designated domains E, D, A, B and C), which share a common structure consisting of three helices in a closed left-handed twist. Protein A can exist in both secreted and membrane-bound forms, and has two distinct Ig-binding activities: each domain can bind Fc-gamma (the constant region of IgG involved in effector functions) and Fab (the Ig fragment responsible for antigen recognition) [].; GO: 0019865 immunoglobulin binding, 0009405 pathogenesis; PDB: 1EDL_A 1EDI_A 1EDJ_A 1EDK_A 2B88_A 2B87_A 2B89_A 1FC2_C 1DEE_H 1ZXG_A ....
Probab=20.81 E-value=1.4e+02 Score=16.82 Aligned_cols=31 Identities=26% Similarity=0.341 Sum_probs=18.3
Q ss_pred ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCC
Q 044278 9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDL 42 (107)
Q Consensus 9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~ 42 (107)
+.-||+||+++.- +. +=|..|-+- ++-||+.
T Consensus 10 QnAFY~vl~~~nL-te-eQrn~yI~~-lKddPs~ 40 (54)
T PF02216_consen 10 QNAFYEVLHMPNL-TE-EQRNGYIQS-LKDDPSR 40 (54)
T ss_dssp HHHHHHHHCSTTS--H-HHHHHHHHH-HHH-GCC
T ss_pred HHHHHHHHcCCCc-CH-HHHHhHHHH-HhhChHH
Confidence 3458999998543 33 335566543 5578876
No 109
>KOG0527 consensus HMG-box transcription factor [Transcription]
Probab=20.19 E-value=1.8e+02 Score=22.45 Aligned_cols=42 Identities=19% Similarity=0.215 Sum_probs=32.7
Q ss_pred HHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchhHHHHHHH
Q 044278 29 TTYRSLAKVYHPDLSGNSQDFIKIHNIYETLSDPTTRAVYDMS 71 (107)
Q Consensus 29 ~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~ 71 (107)
+..|+...+--|+-. +.|..+.|-.-|..|++.+||-.+|..
T Consensus 75 q~~RRkma~qnP~mH-NSEISK~LG~~WK~Lse~EKrPFi~EA 116 (331)
T KOG0527|consen 75 QGQRRKLAKQNPKMH-NSEISKRLGAEWKLLSEEEKRPFVDEA 116 (331)
T ss_pred HHHHHHHHHhCcchh-hHHHHHHHHHHHhhcCHhhhccHHHHH
Confidence 344555556667764 778999999999999999999888843
Done!