Query 044278
Match_columns 107
No_of_seqs 158 out of 1033
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 23:00:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044278.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044278hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2o37_A Protein SIS1; HSP40, J- 99.9 1.3E-23 4.3E-28 131.6 8.3 71 9-79 7-78 (92)
2 2dn9_A DNAJ homolog subfamily 99.9 8.7E-24 3E-28 128.7 6.9 68 6-73 3-74 (79)
3 2ctr_A DNAJ homolog subfamily 99.9 3E-23 1E-27 128.9 9.0 72 5-76 2-76 (88)
4 2och_A Hypothetical protein DN 99.9 2.3E-23 7.9E-28 125.2 7.4 66 8-73 6-72 (73)
5 2ctp_A DNAJ homolog subfamily 99.9 1.1E-23 3.7E-28 128.1 5.4 70 5-74 2-74 (78)
6 2yua_A Williams-beuren syndrom 99.9 2.8E-23 9.6E-28 131.6 7.5 70 6-75 13-86 (99)
7 2ej7_A HCG3 gene; HCG3 protein 99.9 4.8E-23 1.6E-27 126.2 6.9 68 6-73 5-77 (82)
8 2cug_A Mkiaa0962 protein; DNAJ 99.9 6.6E-23 2.2E-27 127.3 7.2 68 7-74 14-84 (88)
9 1hdj_A Human HSP40, HDJ-1; mol 99.9 8.7E-23 3E-27 123.7 7.6 66 9-74 2-70 (77)
10 2ctq_A DNAJ homolog subfamily 99.9 9.9E-23 3.4E-27 131.7 8.0 71 6-76 16-90 (112)
11 2dmx_A DNAJ homolog subfamily 99.9 9.8E-23 3.3E-27 127.3 7.6 69 5-73 4-77 (92)
12 1wjz_A 1700030A21RIK protein; 99.9 3.2E-23 1.1E-27 129.8 4.6 68 7-74 13-90 (94)
13 2ctw_A DNAJ homolog subfamily 99.9 3E-22 1E-26 128.9 8.4 70 5-74 12-85 (109)
14 2lgw_A DNAJ homolog subfamily 99.9 2.2E-22 7.6E-27 127.7 6.5 66 10-75 2-72 (99)
15 2l6l_A DNAJ homolog subfamily 99.9 6.7E-22 2.3E-26 133.9 7.7 73 3-75 3-85 (155)
16 2qsa_A DNAJ homolog DNJ-2; J-d 99.9 5.6E-22 1.9E-26 127.4 5.7 68 7-74 12-87 (109)
17 1bq0_A DNAJ, HSP40; chaperone, 99.8 3E-22 1E-26 127.6 3.3 67 9-75 2-72 (103)
18 1gh6_A Large T antigen; tumor 99.8 1.1E-22 3.8E-27 132.1 -1.9 66 9-74 7-74 (114)
19 2pf4_E Small T antigen; PP2A, 99.8 2.4E-22 8.3E-27 138.8 -1.6 74 3-76 4-79 (174)
20 1faf_A Large T antigen; J doma 99.8 1.2E-21 4.1E-26 119.6 1.6 63 5-67 6-70 (79)
21 3apq_A DNAJ homolog subfamily 99.8 1.8E-20 6.3E-25 130.6 6.1 66 10-75 2-71 (210)
22 2ys8_A RAB-related GTP-binding 99.8 1.2E-20 4E-25 117.7 4.3 58 9-66 26-86 (90)
23 3hho_A CO-chaperone protein HS 99.8 1.6E-20 5.5E-25 129.6 5.5 67 8-74 2-79 (174)
24 1fpo_A HSC20, chaperone protei 99.8 4.8E-20 1.6E-24 127.0 4.9 64 11-74 2-76 (171)
25 3bvo_A CO-chaperone protein HS 99.8 2.2E-19 7.5E-24 127.0 6.4 67 7-73 40-117 (207)
26 3uo3_A J-type CO-chaperone JAC 99.8 1.7E-19 5.7E-24 125.3 4.7 70 3-72 4-81 (181)
27 2guz_A Mitochondrial import in 99.8 1.3E-19 4.6E-24 108.4 3.3 57 9-65 13-70 (71)
28 3lz8_A Putative chaperone DNAJ 99.8 5.7E-20 1.9E-24 137.7 0.0 65 9-73 27-94 (329)
29 1iur_A KIAA0730 protein; DNAJ 99.8 3.9E-19 1.3E-23 110.6 3.4 60 6-65 12-76 (88)
30 1n4c_A Auxilin; four helix bun 99.7 9.8E-19 3.4E-23 121.4 0.8 60 9-68 116-182 (182)
31 3ag7_A Putative uncharacterize 99.7 3.1E-18 1E-22 109.8 2.6 54 9-63 40-104 (106)
32 2qwo_B Putative tyrosine-prote 99.7 7.6E-18 2.6E-22 105.5 1.3 52 10-61 33-91 (92)
33 3apo_A DNAJ homolog subfamily 99.7 9E-18 3.1E-22 135.5 0.4 69 6-74 17-89 (780)
34 2guz_B Mitochondrial import in 99.3 4.6E-12 1.6E-16 74.4 4.7 52 10-61 4-58 (65)
35 2y4t_A DNAJ homolog subfamily 99.2 7.6E-12 2.6E-16 92.2 5.0 62 9-70 381-449 (450)
36 2pzi_A Probable serine/threoni 93.8 0.044 1.5E-06 43.5 3.5 48 7-58 626-675 (681)
37 1qqr_A Streptokinase domain B; 49.4 9.2 0.00031 24.8 2.0 30 12-41 34-63 (138)
38 2d7l_A WD repeat and HMG-box D 41.5 33 0.0011 19.7 3.5 43 28-70 17-59 (81)
39 1ug2_A 2610100B20RIK gene prod 38.3 19 0.00066 21.8 2.1 22 21-42 67-88 (95)
40 4a3n_A Transcription factor SO 36.5 51 0.0018 17.7 4.2 41 28-69 14-54 (71)
41 2b7e_A PRE-mRNA processing pro 34.5 60 0.002 17.9 4.4 49 25-73 3-57 (59)
42 1vq8_S 50S ribosomal protein L 34.1 26 0.00089 20.7 2.2 21 15-35 26-46 (85)
43 3bbz_A P protein, phosphoprote 32.5 60 0.002 17.2 3.5 27 48-74 4-30 (49)
44 3r8s_T 50S ribosomal protein L 31.8 29 0.001 20.8 2.2 20 15-34 31-50 (93)
45 2zjr_Q 50S ribosomal protein L 31.4 29 0.001 20.9 2.1 21 15-35 26-46 (95)
46 3j21_T 50S ribosomal protein L 30.2 33 0.0011 20.3 2.2 21 15-35 27-47 (86)
47 3tve_T 50S ribosomal protein L 29.5 34 0.0012 20.5 2.2 20 15-34 25-44 (92)
48 1wgf_A Upstream binding factor 28.8 86 0.0029 17.9 4.1 43 28-71 32-74 (90)
49 2lxi_A RNA-binding protein 10; 27.8 50 0.0017 18.7 2.7 21 15-35 6-26 (91)
50 2cqn_A Formin-binding protein 27.2 93 0.0032 17.7 4.4 53 21-74 5-64 (77)
51 1r5q_A KAI A, circadian oscill 26.8 1.1E+02 0.0038 18.6 4.7 33 24-56 11-44 (102)
52 3f27_D Transcription factor SO 26.5 89 0.003 17.3 4.6 41 28-69 18-58 (83)
53 1v2z_A Circadian clock protein 26.1 1.2E+02 0.0041 18.7 4.2 33 24-56 18-51 (111)
54 2yrq_A High mobility group pro 25.8 1.3E+02 0.0044 19.3 4.8 42 28-69 27-69 (173)
55 2eqz_A High mobility group pro 25.6 97 0.0033 17.5 4.3 42 28-69 27-69 (86)
56 1i11_A Transcription factor SO 24.7 97 0.0033 17.2 4.3 43 28-71 16-58 (81)
57 1ckt_A High mobility group 1 p 24.2 91 0.0031 16.7 4.9 41 29-69 14-55 (71)
58 1r4v_A Hypothetical protein AQ 23.5 1.6E+02 0.0055 19.7 4.8 32 27-58 138-169 (171)
59 1wz6_A HMG-box transcription f 22.3 1.1E+02 0.0038 16.9 4.8 41 28-69 19-59 (82)
60 1cf7_A Protein (transcription 21.9 61 0.0021 18.5 2.2 46 21-73 9-54 (76)
61 1iqt_A AUF1, heterogeneous nuc 21.3 84 0.0029 16.5 2.7 20 15-34 4-23 (75)
62 2crj_A SWI/SNF-related matrix- 20.8 1.3E+02 0.0044 17.2 5.3 41 28-69 19-59 (92)
63 1gt0_D Transcription factor SO 20.2 1.2E+02 0.0042 16.6 3.4 40 29-69 15-54 (80)
No 1
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.3e-23 Score=131.60 Aligned_cols=71 Identities=35% Similarity=0.642 Sum_probs=65.0
Q ss_pred ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCC-CChHHHHHHHHHHHHcCCchhHHHHHHHhhhhcccC
Q 044278 9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLS-GNSQDFIKIHNIYETLSDPTTRAVYDMSLVSRRRTR 79 (107)
Q Consensus 9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~-~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~ 79 (107)
..|||+||||++.++.++||++|++|++++|||++ .+.+.|+.|++||++|+||.+|..||.++.......
T Consensus 7 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~~ 78 (92)
T 2o37_A 7 ETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREIYDQYGLEAARSG 78 (92)
T ss_dssp CCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCCHHHHHHHHHHHHHHTSHHHHHHHHHHCHHHHHTT
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHhhcc
Confidence 57999999999999999999999999999999998 456799999999999999999999999987755443
No 2
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.90 E-value=8.7e-24 Score=128.66 Aligned_cols=68 Identities=35% Similarity=0.572 Sum_probs=63.1
Q ss_pred CCCccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchhHHHHHHHhh
Q 044278 6 QGTGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN----SQDFIKIHNIYETLSDPTTRAVYDMSLV 73 (107)
Q Consensus 6 ~~~~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 73 (107)
.....|||+||||+++++.++||++|++|++++|||+++. .+.|+.|++||++|+||.+|..||.++.
T Consensus 3 ~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 74 (79)
T 2dn9_A 3 SGSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGS 74 (79)
T ss_dssp SSCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCC
T ss_pred CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccC
Confidence 4567899999999999999999999999999999999864 4689999999999999999999999874
No 3
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=3e-23 Score=128.89 Aligned_cols=72 Identities=35% Similarity=0.511 Sum_probs=65.3
Q ss_pred CCCCccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCchhHHHHHHHhhhhc
Q 044278 5 AQGTGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN---SQDFIKIHNIYETLSDPTTRAVYDMSLVSRR 76 (107)
Q Consensus 5 ~~~~~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 76 (107)
+.....+||+||||++.++.++||++|++|++++|||+++. .+.|+.|++||++|+||.+|..||..+...-
T Consensus 2 s~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 76 (88)
T 2ctr_A 2 SSGSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYDTLGHSAF 76 (88)
T ss_dssp CSCCCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHHH
T ss_pred CCCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccc
Confidence 34567899999999999999999999999999999999975 4589999999999999999999999886543
No 4
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.89 E-value=2.3e-23 Score=125.19 Aligned_cols=66 Identities=35% Similarity=0.611 Sum_probs=61.3
Q ss_pred CccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC-hHHHHHHHHHHHHcCCchhHHHHHHHhh
Q 044278 8 TGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN-SQDFIKIHNIYETLSDPTTRAVYDMSLV 73 (107)
Q Consensus 8 ~~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~-~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 73 (107)
...+||+||||+++++.++|+++|++|++++|||+++. .+.|+.|++||++|+||.+|..||..|.
T Consensus 6 ~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 72 (73)
T 2och_A 6 KETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQIYDQGGE 72 (73)
T ss_dssp CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTCHHHHHHHHHHHHHHTSHHHHHHHHHTC-
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCHHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 35799999999999999999999999999999999965 5799999999999999999999999874
No 5
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=1.1e-23 Score=128.06 Aligned_cols=70 Identities=31% Similarity=0.521 Sum_probs=63.8
Q ss_pred CCCCccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278 5 AQGTGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN---SQDFIKIHNIYETLSDPTTRAVYDMSLVS 74 (107)
Q Consensus 5 ~~~~~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 74 (107)
+.....|||+||||++.++.++||++|++|++++|||+++. .+.|+.|++||++|+||.+|..||..+..
T Consensus 2 s~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~ 74 (78)
T 2ctp_A 2 SSGSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGSG 74 (78)
T ss_dssp CCSCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHHHHHHHHTCSC
T ss_pred CCCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHcCcc
Confidence 34567899999999999999999999999999999999854 46899999999999999999999998753
No 6
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=2.8e-23 Score=131.59 Aligned_cols=70 Identities=31% Similarity=0.523 Sum_probs=63.8
Q ss_pred CCCccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchhHHHHHHHhhhh
Q 044278 6 QGTGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN----SQDFIKIHNIYETLSDPTTRAVYDMSLVSR 75 (107)
Q Consensus 6 ~~~~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 75 (107)
.....+||+||||++.++.++||++|++|++++|||+++. .+.|+.|++||++|+||.+|..||..+...
T Consensus 13 ~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~~ 86 (99)
T 2yua_A 13 SYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGLLSD 86 (99)
T ss_dssp SSCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCCH
T ss_pred CCCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcccc
Confidence 4557899999999999999999999999999999999964 568999999999999999999999977553
No 7
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=4.8e-23 Score=126.16 Aligned_cols=68 Identities=34% Similarity=0.505 Sum_probs=62.6
Q ss_pred CCCccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCCh-----HHHHHHHHHHHHcCCchhHHHHHHHhh
Q 044278 6 QGTGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNS-----QDFIKIHNIYETLSDPTTRAVYDMSLV 73 (107)
Q Consensus 6 ~~~~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~-----~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 73 (107)
.+...|||+||||+++++.++||++|++|++++|||+++.. +.|+.|++||++|+||.+|..||..+.
T Consensus 5 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 77 (82)
T 2ej7_A 5 SSGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGS 77 (82)
T ss_dssp CSSSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCC
T ss_pred CCCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCc
Confidence 45578999999999999999999999999999999999653 489999999999999999999999874
No 8
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.88 E-value=6.6e-23 Score=127.33 Aligned_cols=68 Identities=32% Similarity=0.509 Sum_probs=62.7
Q ss_pred CCccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCC---ChHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278 7 GTGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSG---NSQDFIKIHNIYETLSDPTTRAVYDMSLVS 74 (107)
Q Consensus 7 ~~~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~---~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 74 (107)
....|||+||||++.++.++||++|++|++++|||+++ +.+.|+.|++||++|+||.+|..||.++..
T Consensus 14 ~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~ 84 (88)
T 2cug_A 14 ALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYDHYGSG 84 (88)
T ss_dssp SSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHHHHHHHHHTTC
T ss_pred cCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHHHHHHHHcCCC
Confidence 35789999999999999999999999999999999985 356899999999999999999999998853
No 9
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.88 E-value=8.7e-23 Score=123.74 Aligned_cols=66 Identities=33% Similarity=0.559 Sum_probs=61.4
Q ss_pred ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCC---ChHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278 9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSG---NSQDFIKIHNIYETLSDPTTRAVYDMSLVS 74 (107)
Q Consensus 9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~---~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 74 (107)
..|||+||||+++++.++||++|++|++++|||+++ +.+.|+.|++||++|+||.+|..||.++..
T Consensus 2 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 70 (77)
T 1hdj_A 2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEE 70 (77)
T ss_dssp CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGG
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHHccc
Confidence 469999999999999999999999999999999985 356899999999999999999999998854
No 10
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=9.9e-23 Score=131.68 Aligned_cols=71 Identities=23% Similarity=0.368 Sum_probs=64.9
Q ss_pred CCCccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchhHHHHHHHhhhhc
Q 044278 6 QGTGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN----SQDFIKIHNIYETLSDPTTRAVYDMSLVSRR 76 (107)
Q Consensus 6 ~~~~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 76 (107)
.....|||+||||+++++.++||++|++|++++|||+++. .+.|+.|++||++|+||.+|..||..+....
T Consensus 16 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~ 90 (112)
T 2ctq_A 16 SEDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRSQM 90 (112)
T ss_dssp CCCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTC
T ss_pred ccCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhcc
Confidence 3457899999999999999999999999999999999964 5799999999999999999999999987643
No 11
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=9.8e-23 Score=127.35 Aligned_cols=69 Identities=33% Similarity=0.540 Sum_probs=63.0
Q ss_pred CCCCccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC-----hHHHHHHHHHHHHcCCchhHHHHHHHhh
Q 044278 5 AQGTGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN-----SQDFIKIHNIYETLSDPTTRAVYDMSLV 73 (107)
Q Consensus 5 ~~~~~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~-----~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 73 (107)
+.+...|||+||||++.++.++||++|++|++++|||+++. .+.|+.|++||++|+||.+|..||..+.
T Consensus 4 ~~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 77 (92)
T 2dmx_A 4 GSSGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGC 77 (92)
T ss_dssp CCCCCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCS
T ss_pred CCCCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCc
Confidence 34557899999999999999999999999999999999865 3589999999999999999999999874
No 12
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.88 E-value=3.2e-23 Score=129.80 Aligned_cols=68 Identities=28% Similarity=0.580 Sum_probs=62.1
Q ss_pred CCccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC----------hHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278 7 GTGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN----------SQDFIKIHNIYETLSDPTTRAVYDMSLVS 74 (107)
Q Consensus 7 ~~~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----------~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 74 (107)
....|||+||||+++++.++||++|++|++++|||+++. .+.|+.|++||++|+||.+|..||..+..
T Consensus 13 ~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~ 90 (94)
T 1wjz_A 13 TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRSG 90 (94)
T ss_dssp SSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSCC
T ss_pred CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHccC
Confidence 346899999999999999999999999999999999752 35899999999999999999999998854
No 13
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.87 E-value=3e-22 Score=128.93 Aligned_cols=70 Identities=37% Similarity=0.568 Sum_probs=64.1
Q ss_pred CCCCccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278 5 AQGTGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN----SQDFIKIHNIYETLSDPTTRAVYDMSLVS 74 (107)
Q Consensus 5 ~~~~~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 74 (107)
......+||+||||++.++.++||++|++|++++|||+++. .+.|+.|++||++|+||.+|..||..+..
T Consensus 12 ~~~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~ 85 (109)
T 2ctw_A 12 LSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSL 85 (109)
T ss_dssp TTSCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHH
T ss_pred cCCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhccc
Confidence 34557899999999999999999999999999999999975 46899999999999999999999998765
No 14
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.87 E-value=2.2e-22 Score=127.65 Aligned_cols=66 Identities=33% Similarity=0.533 Sum_probs=60.7
Q ss_pred cCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC-----hHHHHHHHHHHHHcCCchhHHHHHHHhhhh
Q 044278 10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN-----SQDFIKIHNIYETLSDPTTRAVYDMSLVSR 75 (107)
Q Consensus 10 ~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~-----~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 75 (107)
.|||+||||+++++.++||++|++|++++|||+++. .+.|+.|++||++|+||.+|..||..+...
T Consensus 2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~ 72 (99)
T 2lgw_A 2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREG 72 (99)
T ss_dssp CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC-
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccc
Confidence 489999999999999999999999999999999864 358999999999999999999999988543
No 15
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.86 E-value=6.7e-22 Score=133.93 Aligned_cols=73 Identities=29% Similarity=0.574 Sum_probs=65.6
Q ss_pred CCCCCCccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCCh----------HHHHHHHHHHHHcCCchhHHHHHHHh
Q 044278 3 VMAQGTGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNS----------QDFIKIHNIYETLSDPTTRAVYDMSL 72 (107)
Q Consensus 3 ~~~~~~~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~----------~~f~~i~~Ay~~L~d~~~R~~Yd~~~ 72 (107)
.+......|||+||||+++++.++||++|++|++++|||+++.. +.|+.|++||++|+||.+|..||..+
T Consensus 3 ~~~~~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~ 82 (155)
T 2l6l_A 3 AVEQMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQR 82 (155)
T ss_dssp CCCCCCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHH
T ss_pred CcccCCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 35566778999999999999999999999999999999998532 68999999999999999999999888
Q ss_pred hhh
Q 044278 73 VSR 75 (107)
Q Consensus 73 ~~~ 75 (107)
...
T Consensus 83 ~~~ 85 (155)
T 2l6l_A 83 CED 85 (155)
T ss_dssp HHH
T ss_pred chh
Confidence 653
No 16
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.85 E-value=5.6e-22 Score=127.41 Aligned_cols=68 Identities=32% Similarity=0.458 Sum_probs=63.0
Q ss_pred CCccCccchhccCCCC-CHHHHHHHHHHHHHHhCCCCCCC-------hHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278 7 GTGRSLYEVLRVEPMT-TISEIKTTYRSLAKVYHPDLSGN-------SQDFIKIHNIYETLSDPTTRAVYDMSLVS 74 (107)
Q Consensus 7 ~~~~~~Y~iLgv~~~a-~~~~Ik~ayr~l~~~~hPD~~~~-------~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 74 (107)
....|||+||||++++ +.++||++|++|++++|||+++. .+.|+.|++||++|+||.+|..||..+..
T Consensus 12 ~~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~~ 87 (109)
T 2qsa_A 12 CGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDH 87 (109)
T ss_dssp TTTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC
T ss_pred cCCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccC
Confidence 3478999999999999 99999999999999999999875 45899999999999999999999999854
No 17
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.85 E-value=3e-22 Score=127.60 Aligned_cols=67 Identities=34% Similarity=0.555 Sum_probs=61.9
Q ss_pred ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchhHHHHHHHhhhh
Q 044278 9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN----SQDFIKIHNIYETLSDPTTRAVYDMSLVSR 75 (107)
Q Consensus 9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 75 (107)
..|||+||||+++++.++||++|++|++++|||+++. .+.|+.|++||++|+||.+|..||..+...
T Consensus 2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~ 72 (103)
T 1bq0_A 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAA 72 (103)
T ss_dssp CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTS
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhh
Confidence 4699999999999999999999999999999999863 468999999999999999999999988654
No 18
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.83 E-value=1.1e-22 Score=132.10 Aligned_cols=66 Identities=20% Similarity=0.265 Sum_probs=61.8
Q ss_pred ccCccchhccCCCCCH--HHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278 9 GRSLYEVLRVEPMTTI--SEIKTTYRSLAKVYHPDLSGNSQDFIKIHNIYETLSDPTTRAVYDMSLVS 74 (107)
Q Consensus 9 ~~~~Y~iLgv~~~a~~--~~Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 74 (107)
..++|+||||++.++. ++||++||+|++++|||+++..++|++|++||+||+||.+|..||.++..
T Consensus 7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~~e~f~~I~~AYevL~d~~~R~~~~~~~~~ 74 (114)
T 1gh6_A 7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAHQPDFGGF 74 (114)
T ss_dssp HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCTTTTTHHHHHHHHHHHHHHHSCCSSCCSCC
T ss_pred hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHHCCHHHHHHhhhcccc
Confidence 4689999999999988 99999999999999999999999999999999999999999999976643
No 19
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.82 E-value=2.4e-22 Score=138.79 Aligned_cols=74 Identities=20% Similarity=0.295 Sum_probs=63.9
Q ss_pred CCCCCCccCccchhccCCCCC--HHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchhHHHHHHHhhhhc
Q 044278 3 VMAQGTGRSLYEVLRVEPMTT--ISEIKTTYRSLAKVYHPDLSGNSQDFIKIHNIYETLSDPTTRAVYDMSLVSRR 76 (107)
Q Consensus 3 ~~~~~~~~~~Y~iLgv~~~a~--~~~Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 76 (107)
+|+.....++|+||||+++|+ .++||+|||++++++|||++++.++|+.|++||++|+||.+|+.||..+....
T Consensus 4 ~l~~~~~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~~e~F~~I~~AYevLsdp~kR~~YD~~G~~w~ 79 (174)
T 2pf4_E 4 VLNREESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAHQPDFGGFWD 79 (174)
T ss_dssp TSCHHHHHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---CCTTTTHHHHHHHHHHHHHHHHTSCGGGGCC-
T ss_pred hhcccccccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHhCCHHHHHHHhccCCccc
Confidence 345556789999999999998 69999999999999999999999999999999999999999999999996443
No 20
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.82 E-value=1.2e-21 Score=119.64 Aligned_cols=63 Identities=14% Similarity=0.339 Sum_probs=58.4
Q ss_pred CCCCccCccchhccCCC--CCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchhHHH
Q 044278 5 AQGTGRSLYEVLRVEPM--TTISEIKTTYRSLAKVYHPDLSGNSQDFIKIHNIYETLSDPTTRAV 67 (107)
Q Consensus 5 ~~~~~~~~Y~iLgv~~~--a~~~~Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~ 67 (107)
+.....++|+||||+++ ++.++||++||+|++++|||++++.+.|+.|++||++|+++.+|..
T Consensus 6 ~~~~~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~~~~f~~i~~AYe~L~~~~~r~~ 70 (79)
T 1faf_A 6 SRADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFKTEVYNLR 70 (79)
T ss_dssp CHHHHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchhHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHhhHHHHHH
Confidence 44455789999999999 9999999999999999999999999999999999999999998875
No 21
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.81 E-value=1.8e-20 Score=130.57 Aligned_cols=66 Identities=33% Similarity=0.529 Sum_probs=61.0
Q ss_pred cCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchhHHHHHHHhhhh
Q 044278 10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN----SQDFIKIHNIYETLSDPTTRAVYDMSLVSR 75 (107)
Q Consensus 10 ~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 75 (107)
.|||+||||+++|+.++||+|||+|++++|||+++. .++|+.|++||++|+||.+|..||..+...
T Consensus 2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~ 71 (210)
T 3apq_A 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKG 71 (210)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTT
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhcccc
Confidence 589999999999999999999999999999999853 458999999999999999999999988553
No 22
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.2e-20 Score=117.72 Aligned_cols=58 Identities=26% Similarity=0.474 Sum_probs=54.0
Q ss_pred ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCC---CChHHHHHHHHHHHHcCCchhHH
Q 044278 9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLS---GNSQDFIKIHNIYETLSDPTTRA 66 (107)
Q Consensus 9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~---~~~~~f~~i~~Ay~~L~d~~~R~ 66 (107)
..|||+||||+++++.++||++|++|++++|||++ .+.+.|+.|++||++|+||.+|.
T Consensus 26 ~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~ 86 (90)
T 2ys8_A 26 SKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSG 86 (90)
T ss_dssp CSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHCCS
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCccccc
Confidence 47999999999999999999999999999999998 44679999999999999998875
No 23
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.81 E-value=1.6e-20 Score=129.64 Aligned_cols=67 Identities=30% Similarity=0.460 Sum_probs=59.8
Q ss_pred CccCccchhccCCCCC--HHHHHHHHHHHHHHhCCCCCCC---------hHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278 8 TGRSLYEVLRVEPMTT--ISEIKTTYRSLAKVYHPDLSGN---------SQDFIKIHNIYETLSDPTTRAVYDMSLVS 74 (107)
Q Consensus 8 ~~~~~Y~iLgv~~~a~--~~~Ik~ayr~l~~~~hPD~~~~---------~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 74 (107)
...|||+||||+++++ ..+|+++|++|++++|||+++. .+.|..|++||+||+||.+|..||..+.+
T Consensus 2 ~~~d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~g 79 (174)
T 3hho_A 2 NAMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLSLQG 79 (174)
T ss_dssp --CCHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTT
T ss_pred CCCCHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHccC
Confidence 4689999999999987 9999999999999999999843 25899999999999999999999998853
No 24
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.79 E-value=4.8e-20 Score=126.98 Aligned_cols=64 Identities=23% Similarity=0.429 Sum_probs=59.0
Q ss_pred CccchhccCCCC--CHHHHHHHHHHHHHHhCCCCCCCh---------HHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278 11 SLYEVLRVEPMT--TISEIKTTYRSLAKVYHPDLSGNS---------QDFIKIHNIYETLSDPTTRAVYDMSLVS 74 (107)
Q Consensus 11 ~~Y~iLgv~~~a--~~~~Ik~ayr~l~~~~hPD~~~~~---------~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 74 (107)
|||+||||++++ +..+||++|++|++++|||+++.. +.|..|++||+||+||.+|..||..+.+
T Consensus 2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~g 76 (171)
T 1fpo_A 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHG 76 (171)
T ss_dssp HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTTT
T ss_pred CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhcC
Confidence 899999999998 999999999999999999998542 4799999999999999999999998753
No 25
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.78 E-value=2.2e-19 Score=127.02 Aligned_cols=67 Identities=19% Similarity=0.460 Sum_probs=59.9
Q ss_pred CCccCccchhccCCC--CCHHHHHHHHHHHHHHhCCCCCCC---------hHHHHHHHHHHHHcCCchhHHHHHHHhh
Q 044278 7 GTGRSLYEVLRVEPM--TTISEIKTTYRSLAKVYHPDLSGN---------SQDFIKIHNIYETLSDPTTRAVYDMSLV 73 (107)
Q Consensus 7 ~~~~~~Y~iLgv~~~--a~~~~Ik~ayr~l~~~~hPD~~~~---------~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 73 (107)
....|||+||||++. ++..+||++||+|++++|||+++. .+.|+.|++||+||+||.+|..||..+.
T Consensus 40 ~~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~~l~ 117 (207)
T 3bvo_A 40 DPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKLH 117 (207)
T ss_dssp CTTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHT
T ss_pred CCCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhc
Confidence 346899999999986 799999999999999999999853 2368999999999999999999998764
No 26
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.77 E-value=1.7e-19 Score=125.31 Aligned_cols=70 Identities=26% Similarity=0.501 Sum_probs=61.8
Q ss_pred CCCCCCccCccchh------ccCC-CCCHHHHHHHHHHHHHHhCCCCCC-ChHHHHHHHHHHHHcCCchhHHHHHHHh
Q 044278 3 VMAQGTGRSLYEVL------RVEP-MTTISEIKTTYRSLAKVYHPDLSG-NSQDFIKIHNIYETLSDPTTRAVYDMSL 72 (107)
Q Consensus 3 ~~~~~~~~~~Y~iL------gv~~-~a~~~~Ik~ayr~l~~~~hPD~~~-~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~ 72 (107)
++.+....|||+|| |+++ +++..+||++||+|++++|||+++ +.+.|+.|++||+||+||.+|..||..+
T Consensus 4 ~~~~~~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~a~~~f~~i~~AY~vL~dp~~R~~Yd~~l 81 (181)
T 3uo3_A 4 LVQRRFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPLRRSQYMLKL 81 (181)
T ss_dssp ---CCCSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCSCSSGGGSHHHHHHHHHSHHHHHHHHHHH
T ss_pred ccCCCCCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCccHHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence 34667789999999 4665 799999999999999999999997 6779999999999999999999999987
No 27
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.77 E-value=1.3e-19 Score=108.41 Aligned_cols=57 Identities=19% Similarity=0.254 Sum_probs=53.2
Q ss_pred ccCccchhccCC-CCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchhH
Q 044278 9 GRSLYEVLRVEP-MTTISEIKTTYRSLAKVYHPDLSGNSQDFIKIHNIYETLSDPTTR 65 (107)
Q Consensus 9 ~~~~Y~iLgv~~-~a~~~~Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R 65 (107)
..++|+||||++ +++.++|+++|++|++++|||++++.+.|+.|++||++|+++..|
T Consensus 13 ~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~~~~f~~i~~Aye~L~~~~~r 70 (71)
T 2guz_A 13 SKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSPFLATKINEAKDFLEKRGIS 70 (71)
T ss_dssp HHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCCHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHhhhhhc
Confidence 368999999999 799999999999999999999999999999999999999987654
No 28
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=99.75 E-value=5.7e-20 Score=137.66 Aligned_cols=65 Identities=37% Similarity=0.635 Sum_probs=0.0
Q ss_pred ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCchhHHHHHHHhh
Q 044278 9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN---SQDFIKIHNIYETLSDPTTRAVYDMSLV 73 (107)
Q Consensus 9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 73 (107)
.+|||+||||+++|+.++||+|||+|+++||||+++. .++|++|++||++|+||.+|..||.++.
T Consensus 27 ~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 94 (329)
T 3lz8_A 27 LKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQ 94 (329)
T ss_dssp --------------------------------------------------------------------
T ss_pred ccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHhhhhhhhcccchhhc
Confidence 4799999999999999999999999999999999853 5689999999999999999999999843
No 29
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.75 E-value=3.9e-19 Score=110.56 Aligned_cols=60 Identities=20% Similarity=0.172 Sum_probs=54.1
Q ss_pred CCCccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC-----hHHHHHHHHHHHHcCCchhH
Q 044278 6 QGTGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN-----SQDFIKIHNIYETLSDPTTR 65 (107)
Q Consensus 6 ~~~~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~-----~~~f~~i~~Ay~~L~d~~~R 65 (107)
.....++|+||||+++++.++||++|++|+++||||+++. .+.|+.|++||++|++...|
T Consensus 12 ~~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r 76 (88)
T 1iur_A 12 GSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFL 76 (88)
T ss_dssp SSCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhccc
Confidence 3456789999999999999999999999999999999975 46899999999999987665
No 30
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.71 E-value=9.8e-19 Score=121.44 Aligned_cols=60 Identities=18% Similarity=0.458 Sum_probs=54.9
Q ss_pred ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC-------hHHHHHHHHHHHHcCCchhHHHH
Q 044278 9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN-------SQDFIKIHNIYETLSDPTTRAVY 68 (107)
Q Consensus 9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~-------~~~f~~i~~Ay~~L~d~~~R~~Y 68 (107)
..++|+||||++.++.++||++||++++++|||+++. .+.|+.|++||++|+|+.+|..|
T Consensus 116 ~~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y 182 (182)
T 1n4c_A 116 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 182 (182)
T ss_dssp TCCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred ccchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence 3699999999999999999999999999999999842 35899999999999999999765
No 31
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.70 E-value=3.1e-18 Score=109.82 Aligned_cols=54 Identities=13% Similarity=0.249 Sum_probs=49.0
Q ss_pred ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC-----------hHHHHHHHHHHHHcCCch
Q 044278 9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN-----------SQDFIKIHNIYETLSDPT 63 (107)
Q Consensus 9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~-----------~~~f~~i~~Ay~~L~d~~ 63 (107)
..+||+|||++. |+.++||+|||++++++|||+++. .++|+.|++||++|+|+.
T Consensus 40 ~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~ 104 (106)
T 3ag7_A 40 GSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG 104 (106)
T ss_dssp TSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence 479999999996 999999999999999999999741 468999999999999975
No 32
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.67 E-value=7.6e-18 Score=105.50 Aligned_cols=52 Identities=15% Similarity=0.363 Sum_probs=47.6
Q ss_pred cCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC-------hHHHHHHHHHHHHcCC
Q 044278 10 RSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN-------SQDFIKIHNIYETLSD 61 (107)
Q Consensus 10 ~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~-------~~~f~~i~~Ay~~L~d 61 (107)
.++|++|||++.|+.++||+|||++++++|||+++. .+.|+.|++||++|.+
T Consensus 33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence 589999999999999999999999999999999853 3489999999999964
No 33
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.65 E-value=9e-18 Score=135.49 Aligned_cols=69 Identities=32% Similarity=0.500 Sum_probs=40.7
Q ss_pred CCCccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278 6 QGTGRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGN----SQDFIKIHNIYETLSDPTTRAVYDMSLVS 74 (107)
Q Consensus 6 ~~~~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 74 (107)
.....|||+||||+++|+.++||+|||+|++++|||+++. .++|+.|++||++|+||.+|..||..+..
T Consensus 17 ~~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~ 89 (780)
T 3apo_A 17 GRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEK 89 (780)
T ss_dssp ------CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC---
T ss_pred CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhccc
Confidence 4457899999999999999999999999999999999853 45899999999999999999999998865
No 34
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.27 E-value=4.6e-12 Score=74.42 Aligned_cols=52 Identities=17% Similarity=0.173 Sum_probs=48.2
Q ss_pred cCccchhccCCC---CCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCC
Q 044278 10 RSLYEVLRVEPM---TTISEIKTTYRSLAKVYHPDLSGNSQDFIKIHNIYETLSD 61 (107)
Q Consensus 10 ~~~Y~iLgv~~~---a~~~~Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d 61 (107)
..-|.||||++. ++.++|+++|++|...+|||++++.-....|++|+++|..
T Consensus 4 ~EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS~yl~~ki~~Ake~l~~ 58 (65)
T 2guz_B 4 DESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGSFYLQSKVYRAAERLKW 58 (65)
T ss_dssp HHHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 345889999999 9999999999999999999999999999999999999964
No 35
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.23 E-value=7.6e-12 Score=92.21 Aligned_cols=62 Identities=39% Similarity=0.565 Sum_probs=52.9
Q ss_pred ccCccchhccCCCCCHHHHHHHHHHHHHHhCCCCCCCh-------HHHHHHHHHHHHcCCchhHHHHHH
Q 044278 9 GRSLYEVLRVEPMTTISEIKTTYRSLAKVYHPDLSGNS-------QDFIKIHNIYETLSDPTTRAVYDM 70 (107)
Q Consensus 9 ~~~~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~-------~~f~~i~~Ay~~L~d~~~R~~Yd~ 70 (107)
..++|.+||+.+.++.++|+++|+++++++|||+.+.. +.|+.|.+||++|+||.+|..||.
T Consensus 381 ~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~ 449 (450)
T 2y4t_A 381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD 449 (450)
T ss_dssp SCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred chhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence 35899999999999999999999999999999998654 389999999999999999999996
No 36
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=93.83 E-value=0.044 Score=43.47 Aligned_cols=48 Identities=15% Similarity=0.146 Sum_probs=37.4
Q ss_pred CCccCccchhccCCCCCH--HHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH
Q 044278 7 GTGRSLYEVLRVEPMTTI--SEIKTTYRSLAKVYHPDLSGNSQDFIKIHNIYET 58 (107)
Q Consensus 7 ~~~~~~Y~iLgv~~~a~~--~~Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~ 58 (107)
...++||.|||++..... ..|+++||++++...++ .+++..|..|..|
T Consensus 626 ~~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~----~~r~~lvd~a~~v 675 (681)
T 2pzi_A 626 DNKASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ----RHRYTLVDMANKV 675 (681)
T ss_dssp SCCCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH----HHHHHHHHHHHHH
T ss_pred ccCCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh----HHHHHHHHHhccc
Confidence 345669999999766544 67999999999965554 4688899988876
No 37
>1qqr_A Streptokinase domain B; non-proteolytic, plasminogen activation, fibrinolysis, hydrolase activator; 2.30A {Streptococcus dysgalactiae subsp} SCOP: d.15.5.1 PDB: 1c4p_A
Probab=49.39 E-value=9.2 Score=24.85 Aligned_cols=30 Identities=23% Similarity=0.327 Sum_probs=26.6
Q ss_pred ccchhccCCCCCHHHHHHHHHHHHHHhCCC
Q 044278 12 LYEVLRVEPMTTISEIKTTYRSLAKVYHPD 41 (107)
Q Consensus 12 ~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD 41 (107)
++..|.|....+.++++++=..+..++||+
T Consensus 34 ~l~~k~ig~~Its~eL~~~AqeiL~q~hp~ 63 (138)
T 1qqr_A 34 LLKTLAIGDTITSQELLAQAQSILNKNHPG 63 (138)
T ss_dssp EEEEECTTCEEEHHHHHHHHHHHHHHHSTT
T ss_pred hhcccccCcccCHHHHHHHHHHHHHhcCCC
Confidence 367777888889999999999999999998
No 38
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.52 E-value=33 Score=19.68 Aligned_cols=43 Identities=16% Similarity=0.074 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchhHHHHHH
Q 044278 28 KTTYRSLAKVYHPDLSGNSQDFIKIHNIYETLSDPTTRAVYDM 70 (107)
Q Consensus 28 k~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~ 70 (107)
...+|..++.-||+.....+..+.|.+.|..|++..+....+.
T Consensus 17 ~~e~R~~ik~~~P~~~~~~eisK~lge~Wk~ls~eeK~~y~~~ 59 (81)
T 2d7l_A 17 LEENRSNILSDNPDFSDEADIIKEGMIRFRVLSTEERKVWANK 59 (81)
T ss_dssp HHHHHHHHHHHCTTCCSHHHHHHHHHHHHSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCchhHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4566777888899986356778999999999996555544443
No 39
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=38.34 E-value=19 Score=21.82 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=18.3
Q ss_pred CCCHHHHHHHHHHHHHHhCCCC
Q 044278 21 MTTISEIKTTYRSLAKVYHPDL 42 (107)
Q Consensus 21 ~a~~~~Ik~ayr~l~~~~hPD~ 42 (107)
+-+..+|+.+|+.|++++|-..
T Consensus 67 Nks~nqV~~RFq~Lm~Lf~~~~ 88 (95)
T 1ug2_A 67 NKTPVEVSHRFRELMQLFHTAC 88 (95)
T ss_dssp SCCHHHHHHHHHHHHHHHHHCS
T ss_pred cCCHHHHHHHHHHHHHHHHHHh
Confidence 4588999999999999987544
No 40
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=36.49 E-value=51 Score=17.68 Aligned_cols=41 Identities=17% Similarity=0.191 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchhHHHHH
Q 044278 28 KTTYRSLAKVYHPDLSGNSQDFIKIHNIYETLSDPTTRAVYD 69 (107)
Q Consensus 28 k~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 69 (107)
.+.++..++.-||+.. ..+..+.|.+.|..|++..+....+
T Consensus 14 ~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~~eK~~y~~ 54 (71)
T 4a3n_A 14 AKDERKRLAQQNPDLH-NAELSKMLGKSWKALTLAEKRPFVE 54 (71)
T ss_dssp HHHHHHHHHTTCTTSC-HHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 4556777777888865 4567788999999998655444333
No 41
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=34.53 E-value=60 Score=17.86 Aligned_cols=49 Identities=16% Similarity=0.253 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCC-hHHHHHH---HHHHHHcCC-ch-hHHHHHHHhh
Q 044278 25 SEIKTTYRSLAKVYHPDLSGN-SQDFIKI---HNIYETLSD-PT-TRAVYDMSLV 73 (107)
Q Consensus 25 ~~Ik~ayr~l~~~~hPD~~~~-~~~f~~i---~~Ay~~L~d-~~-~R~~Yd~~~~ 73 (107)
++..++|.+|.+...=|..-. ++.+..| ..-|.+|.| |. ++..|+.++.
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i~i~DPrY~al~d~~~eRK~~Fe~Y~~ 57 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVDDDPLWKKEMFEKYLS 57 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCTHHHHSCCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCCCccccccCCHHHHHHHHHHHHh
Confidence 467889999999885555433 3456666 358999997 77 5567888764
No 42
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=34.08 E-value=26 Score=20.71 Aligned_cols=21 Identities=10% Similarity=0.107 Sum_probs=18.0
Q ss_pred hhccCCCCCHHHHHHHHHHHH
Q 044278 15 VLRVEPMTTISEIKTTYRSLA 35 (107)
Q Consensus 15 iLgv~~~a~~~~Ik~ayr~l~ 35 (107)
+|-|++.|+..+||+|-.++-
T Consensus 26 ~F~V~~~AnK~qIK~ave~lf 46 (85)
T 1vq8_S 26 QFAVDDRASKGEVADAVEEQY 46 (85)
T ss_dssp EEEECTTCCHHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHh
Confidence 678999999999999987763
No 43
>3bbz_A P protein, phosphoprotein; molten globule, viral protein, replication; 2.10A {Mumps virus}
Probab=32.48 E-value=60 Score=17.25 Aligned_cols=27 Identities=11% Similarity=0.379 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHcCCchhHHHHHHHhhh
Q 044278 48 DFIKIHNIYETLSDPTTRAVYDMSLVS 74 (107)
Q Consensus 48 ~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 74 (107)
+....+-|-+.+++|..|..|+..+..
T Consensus 4 Kltl~~l~kdCi~np~~r~~Fe~ki~~ 30 (49)
T 3bbz_A 4 KVMITKMITDSVANPQMKQAFEQRLAK 30 (49)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345667788999999999999988765
No 44
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=31.81 E-value=29 Score=20.81 Aligned_cols=20 Identities=40% Similarity=0.476 Sum_probs=16.2
Q ss_pred hhccCCCCCHHHHHHHHHHH
Q 044278 15 VLRVEPMTTISEIKTTYRSL 34 (107)
Q Consensus 15 iLgv~~~a~~~~Ik~ayr~l 34 (107)
+|-|++.|+..+||+|-..+
T Consensus 31 ~F~V~~~AnK~eIK~AVE~l 50 (93)
T 3r8s_T 31 VLKVAKDATKAEIKAAVQKL 50 (93)
T ss_dssp EEEECSSCCHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHH
Confidence 46788899999999887765
No 45
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=31.39 E-value=29 Score=20.88 Aligned_cols=21 Identities=29% Similarity=0.328 Sum_probs=17.8
Q ss_pred hhccCCCCCHHHHHHHHHHHH
Q 044278 15 VLRVEPMTTISEIKTTYRSLA 35 (107)
Q Consensus 15 iLgv~~~a~~~~Ik~ayr~l~ 35 (107)
+|-|++.|+..+||+|-..+-
T Consensus 26 ~F~V~~~anK~eIK~aVE~lf 46 (95)
T 2zjr_Q 26 SFWVSPKATKTEIKDAIQQAF 46 (95)
T ss_dssp EEEECSSCTHHHHHHHHHHHH
T ss_pred EEEEcCCCCHHHHHHHHHHHh
Confidence 678999999999999887663
No 46
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=30.21 E-value=33 Score=20.31 Aligned_cols=21 Identities=19% Similarity=0.233 Sum_probs=17.4
Q ss_pred hhccCCCCCHHHHHHHHHHHH
Q 044278 15 VLRVEPMTTISEIKTTYRSLA 35 (107)
Q Consensus 15 iLgv~~~a~~~~Ik~ayr~l~ 35 (107)
+|-|.+.|+..+||+|-.++-
T Consensus 27 ~F~Vd~~AnK~qIK~AVe~lf 47 (86)
T 3j21_T 27 TFIVDRRATKQDIKRAVEEIF 47 (86)
T ss_dssp EEEECTTCCHHHHHHHHHHHT
T ss_pred EEEEcCCCCHHHHHHHHHHHc
Confidence 467899999999999887763
No 47
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=29.50 E-value=34 Score=20.48 Aligned_cols=20 Identities=30% Similarity=0.408 Sum_probs=17.2
Q ss_pred hhccCCCCCHHHHHHHHHHH
Q 044278 15 VLRVEPMTTISEIKTTYRSL 34 (107)
Q Consensus 15 iLgv~~~a~~~~Ik~ayr~l 34 (107)
+|-|++.|+..+||+|-..+
T Consensus 25 ~F~V~~~AnK~qIK~aVe~l 44 (92)
T 3tve_T 25 TFWVHPKATKTEIKNAVETA 44 (92)
T ss_dssp EEEECTTCCHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHH
Confidence 47889999999999988766
No 48
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=28.84 E-value=86 Score=17.93 Aligned_cols=43 Identities=14% Similarity=0.142 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchhHHHHHHH
Q 044278 28 KTTYRSLAKVYHPDLSGNSQDFIKIHNIYETLSDPTTRAVYDMS 71 (107)
Q Consensus 28 k~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~ 71 (107)
.+.+|..++.-||+. ...+..+.|.+.|..|++..+....+..
T Consensus 32 ~~~~r~~~k~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~Y~~~A 74 (90)
T 1wgf_A 32 SEEKRRQLQEERPEL-SESELTRLLARMWNDLSEKKKAKYKARE 74 (90)
T ss_dssp HHHTHHHHHHHCTTS-CHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 345566677788984 3556778999999999965554444433
No 49
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=27.76 E-value=50 Score=18.65 Aligned_cols=21 Identities=14% Similarity=0.158 Sum_probs=17.9
Q ss_pred hhccCCCCCHHHHHHHHHHHH
Q 044278 15 VLRVEPMTTISEIKTTYRSLA 35 (107)
Q Consensus 15 iLgv~~~a~~~~Ik~ayr~l~ 35 (107)
|=||++.++.++|+..|....
T Consensus 6 v~nLp~~~te~~l~~~F~~~G 26 (91)
T 2lxi_A 6 LRMLPQAATEDDIRGQLQSHG 26 (91)
T ss_dssp EETCCSSCCHHHHHHHHHHHT
T ss_pred EeCCCCCCCHHHHHHHHHHhC
Confidence 348999999999999998764
No 50
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=27.15 E-value=93 Score=17.75 Aligned_cols=53 Identities=11% Similarity=0.287 Sum_probs=37.3
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCh------HHHHHHHHHHHHcCCc-hhHHHHHHHhhh
Q 044278 21 MTTISEIKTTYRSLAKVYHPDLSGNS------QDFIKIHNIYETLSDP-TTRAVYDMSLVS 74 (107)
Q Consensus 21 ~a~~~~Ik~ayr~l~~~~hPD~~~~~------~~f~~i~~Ay~~L~d~-~~R~~Yd~~~~~ 74 (107)
..-+..++..|+.+.+...|.....+ ..|.... +|..|.++ ..+..|+.+...
T Consensus 5 ~~r~rrl~~~F~~mLk~~~p~I~~~s~We~vr~~~e~~~-~fkav~~E~eR~~lFeeYi~~ 64 (77)
T 2cqn_A 5 SSGMKRKESAFKSMLKQAAPPIELDAVWEDIRERFVKEP-AFEDITLESERKRIFKDFMHV 64 (77)
T ss_dssp CCSHHHHHHHHHHHHHTCSSCCCTTCCHHHHHHHHTTSH-HHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHccCH-HHHhcCCHHHHHHHHHHHHHH
Confidence 34567889999999998888766443 2344433 79999775 456678877765
No 51
>1r5q_A KAI A, circadian oscillation regulator; four-helix-bundle, gene regulation; 2.00A {Nostoc SP} SCOP: a.186.1.1
Probab=26.77 E-value=1.1e+02 Score=18.57 Aligned_cols=33 Identities=15% Similarity=0.307 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHhCCCCCCChHH-HHHHHHHH
Q 044278 24 ISEIKTTYRSLAKVYHPDLSGNSQD-FIKIHNIY 56 (107)
Q Consensus 24 ~~~Ik~ayr~l~~~~hPD~~~~~~~-f~~i~~Ay 56 (107)
..+++..||.+.+.|--+-....++ =+.||.|+
T Consensus 11 l~~L~~~YR~ill~YF~~d~~~n~~Id~fVn~aF 44 (102)
T 1r5q_A 11 LQQLKSDYRQILLSYFTTDKALKEKIDKFINAVF 44 (102)
T ss_dssp HHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 3678999999999997776655443 24455554
No 52
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=26.47 E-value=89 Score=17.34 Aligned_cols=41 Identities=17% Similarity=0.191 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchhHHHHH
Q 044278 28 KTTYRSLAKVYHPDLSGNSQDFIKIHNIYETLSDPTTRAVYD 69 (107)
Q Consensus 28 k~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 69 (107)
...++..++.-||+.. ..+..+.|.+.|..|++..+....+
T Consensus 18 ~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~~eK~~y~~ 58 (83)
T 3f27_D 18 AKDERKRLAQQNPDLH-NAELSKMLGKSWKALTLAEKRPFVE 58 (83)
T ss_dssp HHHHHHHHHHHCSSSC-HHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 4566777788899865 4567788999999998655444333
No 53
>1v2z_A Circadian clock protein KAIA homolog; all alpha, riken structural genomics/proteomics initiative, structural genomics; 1.80A {Thermosynechococcus elongatus} SCOP: a.186.1.1 PDB: 1q6a_A 1q6b_A 1suy_A 1sv1_A
Probab=26.12 E-value=1.2e+02 Score=18.72 Aligned_cols=33 Identities=12% Similarity=0.270 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHhCCCCCCChHH-HHHHHHHH
Q 044278 24 ISEIKTTYRSLAKVYHPDLSGNSQD-FIKIHNIY 56 (107)
Q Consensus 24 ~~~Ik~ayr~l~~~~hPD~~~~~~~-f~~i~~Ay 56 (107)
..+++..||.+.+.|--+-....++ =+.||.|+
T Consensus 18 l~~L~~~YR~ill~YF~~d~~~nq~Id~FVn~aF 51 (111)
T 1v2z_A 18 LDELRSIYRTIVLEYFNTDAKVNERIDEFVSKAF 51 (111)
T ss_dssp HHHHHHHHHHHHHHTTCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence 4678999999999997776544432 23344444
No 54
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.76 E-value=1.3e+02 Score=19.27 Aligned_cols=42 Identities=29% Similarity=0.201 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhCCCCC-CChHHHHHHHHHHHHcCCchhHHHHH
Q 044278 28 KTTYRSLAKVYHPDLS-GNSQDFIKIHNIYETLSDPTTRAVYD 69 (107)
Q Consensus 28 k~ayr~l~~~~hPD~~-~~~~~f~~i~~Ay~~L~d~~~R~~Yd 69 (107)
....+..++.-||+.. ...+....|.+.|..|++..+....+
T Consensus 27 ~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~ 69 (173)
T 2yrq_A 27 VQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 69 (173)
T ss_dssp HHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 4556677778899973 56678899999999999766544333
No 55
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.59 E-value=97 Score=17.46 Aligned_cols=42 Identities=17% Similarity=0.112 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhCCCCCC-ChHHHHHHHHHHHHcCCchhHHHHH
Q 044278 28 KTTYRSLAKVYHPDLSG-NSQDFIKIHNIYETLSDPTTRAVYD 69 (107)
Q Consensus 28 k~ayr~l~~~~hPD~~~-~~~~f~~i~~Ay~~L~d~~~R~~Yd 69 (107)
.+..|..++.-||+... ..+..+.|.+.|..|++..+....+
T Consensus 27 ~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~ 69 (86)
T 2eqz_A 27 VQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDE 69 (86)
T ss_dssp HHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 34556666778999764 4677899999999998665544333
No 56
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=24.75 E-value=97 Score=17.16 Aligned_cols=43 Identities=14% Similarity=0.179 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchhHHHHHHH
Q 044278 28 KTTYRSLAKVYHPDLSGNSQDFIKIHNIYETLSDPTTRAVYDMS 71 (107)
Q Consensus 28 k~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~ 71 (107)
.+.++..++.-||+.. ..+..+.|.+.|..|++..+...++..
T Consensus 16 ~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~eeK~~y~~~A 58 (81)
T 1i11_A 16 AKDERRKILQAFPDMH-NSNISKILGSRWKAMTNLEKQPYYEEQ 58 (81)
T ss_dssp HHHHHHHHHTTCSSCC-HHHHHHHHHHHHTTSCSGGGHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHHhhhhhCCHHHHHHHHHHH
Confidence 3455666677788754 456788999999999976665554443
No 57
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=24.21 E-value=91 Score=16.67 Aligned_cols=41 Identities=29% Similarity=0.190 Sum_probs=29.1
Q ss_pred HHHHHHHHHhCCCCCC-ChHHHHHHHHHHHHcCCchhHHHHH
Q 044278 29 TTYRSLAKVYHPDLSG-NSQDFIKIHNIYETLSDPTTRAVYD 69 (107)
Q Consensus 29 ~ayr~l~~~~hPD~~~-~~~~f~~i~~Ay~~L~d~~~R~~Yd 69 (107)
+..|...+.-||+... ..+..+.|.+.|..|++..+....+
T Consensus 14 ~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~ 55 (71)
T 1ckt_A 14 QTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 55 (71)
T ss_dssp HHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCCTTTSHHHHH
T ss_pred HHHHHHHHHHCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 3445556777998753 3678899999999999776554443
No 58
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=23.46 E-value=1.6e+02 Score=19.65 Aligned_cols=32 Identities=6% Similarity=0.006 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH
Q 044278 27 IKTTYRSLAKVYHPDLSGNSQDFIKIHNIYET 58 (107)
Q Consensus 27 Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~ 58 (107)
|--++-+..+..||++++..+.+.....-++.
T Consensus 138 L~valARv~K~l~Pernp~~ehwE~a~~v~Dl 169 (171)
T 1r4v_A 138 LLLMHADVIKKATGERKPSREAMEFVAQIVDK 169 (171)
T ss_dssp HHHHHHHHHHHHCCCSSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Confidence 34566788899999998888877766655543
No 59
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=22.31 E-value=1.1e+02 Score=16.95 Aligned_cols=41 Identities=22% Similarity=0.250 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchhHHHHH
Q 044278 28 KTTYRSLAKVYHPDLSGNSQDFIKIHNIYETLSDPTTRAVYD 69 (107)
Q Consensus 28 k~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 69 (107)
.+.++..++.-||+.. ..+..+.|.+.|..|++..+....+
T Consensus 19 ~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~~eK~~y~~ 59 (82)
T 1wz6_A 19 CKRHRSLVRQEHPRLD-NRGATKILADWWAVLDPKEKQKYTD 59 (82)
T ss_dssp HHHHHHHHHHHCSSSC-TTHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 4556677777889853 5567889999999999655444433
No 60
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=21.87 E-value=61 Score=18.54 Aligned_cols=46 Identities=22% Similarity=0.317 Sum_probs=31.9
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchhHHHHHHHhh
Q 044278 21 MTTISEIKTTYRSLAKVYHPDLSGNSQDFIKIHNIYETLSDPTTRAVYDMSLV 73 (107)
Q Consensus 21 ~a~~~~Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 73 (107)
..+...+.+.|..+... +|+. -..|++|-+.|.=..+|+.||-..-
T Consensus 9 ~~SL~~lt~kFi~l~~~-~~~~------~i~l~~aa~~L~v~~kRRiYDI~NV 54 (76)
T 1cf7_A 9 EKSLGLLTTKFVSLLQE-AKDG------VLDLKLAADTLAVRQKRRIYDITNV 54 (76)
T ss_dssp TTCHHHHHHHHHHHHHH-SSTT------EEEHHHHHHHTTTCCTHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHh-CCCC------cCcHHHHHHHhCCccceehhhHHHH
Confidence 45777788888888764 3442 2347778888874479999996543
No 61
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=21.35 E-value=84 Score=16.47 Aligned_cols=20 Identities=20% Similarity=0.287 Sum_probs=16.6
Q ss_pred hhccCCCCCHHHHHHHHHHH
Q 044278 15 VLRVEPMTTISEIKTTYRSL 34 (107)
Q Consensus 15 iLgv~~~a~~~~Ik~ayr~l 34 (107)
|=+|+..++.++|+..|.+.
T Consensus 4 v~nLp~~~t~~~l~~~F~~~ 23 (75)
T 1iqt_A 4 VGGLSPDTPEEKIREYFGGF 23 (75)
T ss_dssp ESCCCSSCCHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHHhc
Confidence 34788999999999988775
No 62
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=20.83 E-value=1.3e+02 Score=17.17 Aligned_cols=41 Identities=17% Similarity=0.191 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchhHHHHH
Q 044278 28 KTTYRSLAKVYHPDLSGNSQDFIKIHNIYETLSDPTTRAVYD 69 (107)
Q Consensus 28 k~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 69 (107)
.+..|..++.-||+.. ..+..+.|.+.|..|++..+....+
T Consensus 19 ~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~eeK~~Y~~ 59 (92)
T 2crj_A 19 LNERREQIRTRHPDLP-FPEITKMLGAEWSKLQPAEKQRYLD 59 (92)
T ss_dssp HHHHHHHHHHHCTTCC-HHHHHHHHHHHHHTCCTTHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3556667777889854 5567889999999999776644433
No 63
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=20.17 E-value=1.2e+02 Score=16.63 Aligned_cols=40 Identities=20% Similarity=0.237 Sum_probs=27.2
Q ss_pred HHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchhHHHHH
Q 044278 29 TTYRSLAKVYHPDLSGNSQDFIKIHNIYETLSDPTTRAVYD 69 (107)
Q Consensus 29 ~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 69 (107)
+.++..++.-||+.. ..+....|.+.|..|++..+....+
T Consensus 15 ~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~eeK~~y~~ 54 (80)
T 1gt0_D 15 RGQRRKMAQENPKMH-NSEISKRLGAEWKLLSETEKRPFID 54 (80)
T ss_dssp HHHHHHHHTTSTTSC-HHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 445666667788853 4567789999999998655544433
Done!