BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044279
(305 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 58/142 (40%), Gaps = 26/142 (18%)
Query: 14 DLVELPEAIGK---------LINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFST 64
+L ELPE + L+NL L L T IR LPA I L+NLK L++ S S
Sbjct: 162 ELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIR-NSPLSA 220
Query: 65 ELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVAS 124
A+HH L G +L N I F R L+ C LT+
Sbjct: 221 LGPAIHHLPKLEELDLRGCTALRNYPPI-----FGGRAPLKRL----ILKDCSNLLTL-- 269
Query: 125 PWFSSLDF-RMDHLETLEIVDC 145
LD R+ LE L++ C
Sbjct: 270 ----PLDIHRLTQLEKLDLRGC 287
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 66/166 (39%), Gaps = 24/166 (14%)
Query: 15 LVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFC 74
L ELP+ + L L L+ +R LPA I L L+ L + EL L
Sbjct: 116 LXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA----CPELTELPEPL- 170
Query: 75 CATTVLAGLESLENIHDISITLCFVDT--HAFCRFQSSPKLQSCVKRLTVASPWFSSLDF 132
+T + L N+ + + + + + Q+ +K L + + S+L
Sbjct: 171 ASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQN-------LKSLKIRNSPLSALGP 223
Query: 133 RMDHLETLEIVD----CSLESINIYFGDQGRTYCFRNLRHLSVKDC 174
+ HL LE +D +L + FG GR L+ L +KDC
Sbjct: 224 AIHHLPKLEELDLRGCTALRNYPPIFG--GRAP----LKRLILKDC 263
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 4 LAVLDLSYNFDLVELPEAI-GKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLD 57
L VLDL N L LP A+ +L++L L + K+ ELP GI+ L +L L LD
Sbjct: 90 LTVLDLGTN-QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALD 143
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 15 LVELPEAIGKLINLCHLNLSNTKIRELPAG 44
L ELP I +L +L HL L +++ +P G
Sbjct: 124 LTELPRGIERLTHLTHLALDQNQLKSIPHG 153
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 31.2 bits (69), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 1 MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIR-ELPAGIKYLKNLKILRL 56
+ L L L +N E+P + NL ++LSN ++ E+P I L+NL IL+L
Sbjct: 465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 521
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 14/116 (12%)
Query: 1 MHALAVLDLSYNFDLVELPEAIGKL-INLCHLNLSNTKIRE--LPAGIKYLKN-LKILRL 56
M L VLDLS+N ELPE++ L +L L+LS+ LP + KN L+ L L
Sbjct: 342 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 401
Query: 57 DVFSWFS---------TELVALHHNFC-CATTVLAGLESLENIHDISITLCFVDTH 102
+ +ELV+LH +F + T+ + L SL + D+ + L ++
Sbjct: 402 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 457
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 3 ALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIR-ELPAGIKYLKNLKILRL 56
++ LD+SYN +P+ IG + L LNL + I +P + L+ L IL L
Sbjct: 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDL 687
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 31.2 bits (69), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 1 MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIR-ELPAGIKYLKNLKILRL 56
+ L L L +N E+P + NL ++LSN ++ E+P I L+NL IL+L
Sbjct: 462 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 518
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 14/114 (12%)
Query: 1 MHALAVLDLSYNFDLVELPEAIGKL-INLCHLNLSNTKIRE--LPAGIKYLKN-LKILRL 56
M L VLDLS+N ELPE++ L +L L+LS+ LP + KN L+ L L
Sbjct: 339 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 398
Query: 57 DVFSWFS---------TELVALHHNFC-CATTVLAGLESLENIHDISITLCFVD 100
+ +ELV+LH +F + T+ + L SL + D+ + L ++
Sbjct: 399 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 452
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 3 ALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIR-ELPAGIKYLKNLKILRL 56
++ LD+SYN +P+ IG + L LNL + I +P + L+ L IL L
Sbjct: 630 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDL 684
>pdb|2JQD|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of Lanp
Length = 169
Score = 31.2 bits (69), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Query: 27 NLCHLNLSNTKIRELPAGIKYLKNLKILR-LDVFSWFSTELVALHHN 72
NL HLNLS KI++L + I+ LK L+ L+ LD+F+ T L A N
Sbjct: 94 NLKHLNLSGNKIKDL-STIEPLKKLENLKSLDLFNCEVTNLNAYREN 139
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 6 VLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRL 56
LDLS N + + I K L L L+ + ELPA IK L NL++L L
Sbjct: 228 ALDLS-NLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDL 277
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 1 MHALAVLDLSYNFDLVELPEAI-GKLINLCHLNLSNTKIRELPAG-IKYLKNLKILRLD 57
+ L L L YN +L LP+ + KL +L L L N +++ +P G L LK L+LD
Sbjct: 132 LTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLD 189
>pdb|1Y9M|A Chain A, Crystal Structure Of Exo-Inulinase From Aspergillus
Awamori In Spacegroup P212121
pdb|1Y9G|A Chain A, Crystal Structure Of Exo-Inulinase From Aspergillus
Awamori Complexed With Fructose
pdb|1Y4W|A Chain A, Crystal Structure Of Exo-Inulinase From Aspergillus
Awamori In Spacegroup P21
Length = 518
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 16/18 (88%)
Query: 253 SVYDCPGLRKLPLNSGSA 270
V++CPGL KLPL+SG++
Sbjct: 219 GVWECPGLVKLPLDSGNS 236
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 1 MHALAVLDLSYN-FDLVELPEAIGKLINLCHLNLSNTKIREL 41
M +L LDLS+N FD++ + + G L L L LS K R+L
Sbjct: 120 MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL 161
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 15 LVELPEAI-GKLINLCHLNLSNTKIRELPAGI 45
L LP+ + KL NL +LNL++ +++ LP G+
Sbjct: 121 LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGV 152
>pdb|2JE0|A Chain A, Crystal Structure Of Pp32
pdb|2JE0|B Chain B, Crystal Structure Of Pp32
pdb|2JE0|C Chain C, Crystal Structure Of Pp32
pdb|2JE0|D Chain D, Crystal Structure Of Pp32
pdb|2JE0|E Chain E, Crystal Structure Of Pp32
pdb|2JE0|F Chain F, Crystal Structure Of Pp32
pdb|2JE1|A Chain A, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|B Chain B, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|C Chain C, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|D Chain D, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
Length = 149
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 27 NLCHLNLSNTKIRELPAGIKYLKNLKILR-LDVFSWFSTELVALHHN 72
NL HLNLS KI++L + I+ LK L+ L+ LD+F+ T L N
Sbjct: 89 NLTHLNLSGNKIKDL-STIEPLKKLENLKSLDLFNCEVTNLNDYREN 134
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 15 LVELPEAI-GKLINLCHLNLSNTKIRELPAGI-KYLKNLKILRLDV 58
L LP + KL +L +LNLS +++ LP G+ L LK L L+
Sbjct: 64 LQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNT 109
>pdb|2ELL|A Chain A, Solution Structure Of The Leucine Rich Repeat Of Human
Acidic Leucine- Rich Nuclear Phosphoprotein 32 Family
Member B
pdb|2RR6|A Chain A, Solution Structure Of The Leucine Rich Repeat Of Human
Acidic Leucine- Rich Nuclear Phosphoprotein 32 Family
Member B
Length = 168
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 24 KLINLCHLNLSNTKIRELPAGIKYLKNLKILR-LDVFSWFSTEL 66
KL NL HLNLS K++++ ++ LK L+ L+ LD+F+ T L
Sbjct: 93 KLPNLTHLNLSGNKLKDIST-LEPLKKLECLKSLDLFNCEVTNL 135
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 27.3 bits (59), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 6/55 (10%)
Query: 1 MHALAVLDLSYNF-DLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKIL 54
+ L L++++N +LPE L NL HL+LS+ KI+ + Y +L++L
Sbjct: 124 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-----YCTDLRVL 173
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 27.3 bits (59), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 6/55 (10%)
Query: 1 MHALAVLDLSYNF-DLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKIL 54
+ L L++++N +LPE L NL HL+LS+ KI+ + Y +L++L
Sbjct: 124 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-----YCTDLRVL 173
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 6/55 (10%)
Query: 1 MHALAVLDLSYNF-DLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKIL 54
+ L L++++N +LPE L NL HL+LS+ KI+ + Y +L++L
Sbjct: 125 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-----YCTDLRVL 174
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.138 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,372,530
Number of Sequences: 62578
Number of extensions: 322037
Number of successful extensions: 937
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 896
Number of HSP's gapped (non-prelim): 58
length of query: 305
length of database: 14,973,337
effective HSP length: 98
effective length of query: 207
effective length of database: 8,840,693
effective search space: 1830023451
effective search space used: 1830023451
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)