Query 044279
Match_columns 305
No_of_seqs 132 out of 2038
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 13:07:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044279.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044279hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0444 Cytoskeletal regulator 99.8 2.3E-21 5E-26 173.0 -3.9 229 4-271 128-362 (1255)
2 PLN00113 leucine-rich repeat r 99.8 6.9E-19 1.5E-23 175.3 11.2 174 2-199 140-320 (968)
3 PLN03210 Resistant to P. syrin 99.8 2.3E-18 5E-23 172.9 14.6 125 135-265 778-911 (1153)
4 PLN00113 leucine-rich repeat r 99.8 1.4E-18 3.1E-23 173.1 11.4 247 1-270 163-427 (968)
5 KOG4194 Membrane glycoprotein 99.8 1.7E-19 3.8E-24 159.8 1.3 246 2-270 173-439 (873)
6 PLN03210 Resistant to P. syrin 99.7 2.8E-17 6E-22 165.2 14.0 47 218-265 797-843 (1153)
7 KOG4658 Apoptotic ATPase [Sign 99.7 3E-17 6.6E-22 158.1 6.3 282 1-298 570-883 (889)
8 KOG0444 Cytoskeletal regulator 99.7 6.2E-19 1.3E-23 157.7 -5.4 245 1-271 77-339 (1255)
9 KOG0472 Leucine-rich repeat pr 99.7 4.7E-18 1E-22 144.7 -0.8 239 1-266 251-545 (565)
10 KOG4194 Membrane glycoprotein 99.6 2.2E-16 4.7E-21 140.4 4.7 235 4-266 80-335 (873)
11 KOG0472 Leucine-rich repeat pr 99.6 2.6E-18 5.5E-23 146.3 -7.7 228 1-271 67-298 (565)
12 KOG0618 Serine/threonine phosp 99.5 1.5E-16 3.3E-21 147.8 -5.0 219 2-259 241-488 (1081)
13 PRK15387 E3 ubiquitin-protein 99.5 4.2E-14 9.2E-19 134.1 9.8 37 223-260 422-458 (788)
14 PRK15370 E3 ubiquitin-protein 99.5 3.9E-14 8.5E-19 134.8 5.3 52 4-60 201-252 (754)
15 PRK15387 E3 ubiquitin-protein 99.4 9.1E-13 2E-17 125.2 12.7 116 4-151 203-318 (788)
16 PRK15370 E3 ubiquitin-protein 99.4 1.9E-13 4E-18 130.3 6.7 203 2-259 220-427 (754)
17 KOG0618 Serine/threonine phosp 99.4 7.7E-15 1.7E-19 136.7 -3.8 211 1-235 263-488 (1081)
18 KOG0617 Ras suppressor protein 99.4 2E-14 4.3E-19 109.5 -4.0 79 3-97 34-112 (264)
19 cd00116 LRR_RI Leucine-rich re 99.3 7.9E-13 1.7E-17 115.5 0.8 15 46-60 78-92 (319)
20 cd00116 LRR_RI Leucine-rich re 99.2 1.4E-12 3E-17 114.0 -0.5 234 2-257 51-317 (319)
21 KOG4237 Extracellular matrix p 99.2 1.4E-12 3.1E-17 111.3 -2.2 85 160-258 270-357 (498)
22 KOG1259 Nischarin, modulator o 99.1 6.3E-12 1.4E-16 104.1 -0.0 194 19-235 207-411 (490)
23 KOG0617 Ras suppressor protein 99.1 3.6E-12 7.9E-17 97.3 -3.0 135 1-181 55-189 (264)
24 KOG3207 Beta-tubulin folding c 99.1 1.6E-11 3.5E-16 106.2 0.3 212 17-257 112-336 (505)
25 KOG4237 Extracellular matrix p 99.0 1.6E-11 3.4E-16 105.1 -2.0 84 132-233 271-356 (498)
26 KOG4341 F-box protein containi 99.0 6.8E-12 1.5E-16 107.9 -4.5 60 1-60 163-227 (483)
27 KOG4658 Apoptotic ATPase [Sign 99.0 3.4E-10 7.4E-15 109.9 5.2 229 1-263 544-786 (889)
28 KOG2120 SCF ubiquitin ligase, 99.0 4.8E-12 1E-16 104.6 -6.5 184 26-260 185-376 (419)
29 KOG2120 SCF ubiquitin ligase, 98.9 2.1E-11 4.5E-16 100.9 -4.9 156 88-259 186-350 (419)
30 KOG3207 Beta-tubulin folding c 98.9 2.5E-10 5.3E-15 99.0 0.4 177 1-196 145-335 (505)
31 KOG4341 F-box protein containi 98.9 9.1E-11 2E-15 101.1 -2.7 237 1-262 189-441 (483)
32 COG4886 Leucine-rich repeat (L 98.9 1.9E-09 4.2E-14 97.1 4.5 170 3-200 117-290 (394)
33 KOG0532 Leucine-rich repeat (L 98.8 2.2E-10 4.7E-15 102.4 -2.9 163 6-198 79-245 (722)
34 PF14580 LRR_9: Leucine-rich r 98.8 6.2E-10 1.3E-14 87.6 -0.6 130 23-198 16-151 (175)
35 COG4886 Leucine-rich repeat (L 98.8 7.5E-09 1.6E-13 93.3 5.2 172 22-257 112-287 (394)
36 KOG0532 Leucine-rich repeat (L 98.8 6.4E-10 1.4E-14 99.5 -1.7 146 2-174 121-270 (722)
37 PF14580 LRR_9: Leucine-rich r 98.8 2.3E-09 5E-14 84.3 1.5 77 117-199 44-125 (175)
38 PF13855 LRR_8: Leucine rich r 98.7 6E-09 1.3E-13 67.5 2.7 58 2-60 1-60 (61)
39 KOG1259 Nischarin, modulator o 98.6 3.8E-09 8.3E-14 87.8 -2.4 129 22-175 280-410 (490)
40 KOG1909 Ran GTPase-activating 98.5 4.1E-09 9E-14 89.1 -3.8 236 2-258 30-309 (382)
41 KOG1909 Ran GTPase-activating 98.5 9.8E-09 2.1E-13 86.9 -2.4 212 2-236 58-310 (382)
42 PF13855 LRR_8: Leucine rich r 98.4 4.8E-07 1E-11 58.5 4.0 57 136-198 2-60 (61)
43 PF12799 LRR_4: Leucine Rich r 98.3 5.8E-07 1.3E-11 53.6 2.4 40 2-42 1-40 (44)
44 KOG2982 Uncharacterized conser 98.1 6.9E-07 1.5E-11 74.5 0.9 184 47-261 69-263 (418)
45 KOG0531 Protein phosphatase 1, 98.1 8.6E-07 1.9E-11 80.4 0.7 77 2-96 95-171 (414)
46 KOG2982 Uncharacterized conser 98.0 2.5E-06 5.3E-11 71.3 1.0 185 23-241 68-267 (418)
47 KOG0531 Protein phosphatase 1, 97.9 9.6E-07 2.1E-11 80.1 -1.9 124 25-174 71-196 (414)
48 KOG1859 Leucine-rich repeat pr 97.9 8.4E-08 1.8E-12 88.6 -8.7 72 117-197 166-242 (1096)
49 KOG3665 ZYG-1-like serine/thre 97.9 3.1E-06 6.8E-11 80.7 1.2 82 1-96 147-229 (699)
50 PLN03150 hypothetical protein; 97.9 1.1E-05 2.5E-10 76.7 4.5 79 4-97 420-500 (623)
51 PF12799 LRR_4: Leucine Rich r 97.8 1.2E-05 2.5E-10 48.0 1.7 37 26-62 1-37 (44)
52 PLN03150 hypothetical protein; 97.8 4E-05 8.7E-10 73.0 6.2 110 137-264 420-532 (623)
53 KOG1644 U2-associated snRNP A' 97.7 7.9E-05 1.7E-09 59.0 5.1 77 117-199 44-125 (233)
54 PRK15386 type III secretion pr 97.6 0.00025 5.4E-09 63.1 7.8 120 45-200 48-169 (426)
55 PRK15386 type III secretion pr 97.6 0.00012 2.6E-09 65.1 5.8 127 115-257 52-187 (426)
56 KOG1859 Leucine-rich repeat pr 97.6 1.8E-06 3.9E-11 80.1 -6.0 56 4-61 166-221 (1096)
57 KOG1947 Leucine rich repeat pr 97.5 6.8E-06 1.5E-10 75.8 -4.1 136 24-174 186-331 (482)
58 KOG3665 ZYG-1-like serine/thre 97.4 6E-05 1.3E-09 72.1 1.6 19 132-150 170-188 (699)
59 KOG1947 Leucine rich repeat pr 97.1 2.3E-05 4.9E-10 72.4 -4.6 172 47-234 186-373 (482)
60 COG5238 RNA1 Ran GTPase-activa 97.1 0.00013 2.8E-09 60.5 0.1 184 3-199 31-254 (388)
61 COG5238 RNA1 Ran GTPase-activa 96.8 0.00029 6.3E-09 58.5 -0.2 224 18-257 22-282 (388)
62 KOG1644 U2-associated snRNP A' 96.8 0.0024 5.1E-08 50.9 4.7 38 132-174 110-150 (233)
63 KOG2123 Uncharacterized conser 96.7 0.0001 2.3E-09 61.2 -3.5 79 3-97 20-98 (388)
64 KOG4579 Leucine-rich repeat (L 96.5 0.00041 8.9E-09 51.7 -0.9 83 4-104 29-115 (177)
65 KOG2123 Uncharacterized conser 96.4 7.1E-05 1.5E-09 62.2 -6.1 74 117-198 21-99 (388)
66 KOG4579 Leucine-rich repeat (L 96.3 0.00055 1.2E-08 51.0 -1.2 36 117-152 102-140 (177)
67 PF00560 LRR_1: Leucine Rich R 96.2 0.002 4.3E-08 32.0 0.9 21 3-24 1-21 (22)
68 PF00560 LRR_1: Leucine Rich R 96.1 0.0016 3.5E-08 32.3 0.1 21 27-47 1-21 (22)
69 KOG2739 Leucine-rich acidic nu 95.7 0.0061 1.3E-07 50.4 2.0 107 132-259 40-155 (260)
70 KOG3864 Uncharacterized conser 95.5 0.002 4.2E-08 51.3 -1.5 86 136-237 102-190 (221)
71 KOG2739 Leucine-rich acidic nu 95.0 0.013 2.8E-07 48.5 1.6 82 3-99 44-128 (260)
72 PF13504 LRR_7: Leucine rich r 94.7 0.018 3.9E-07 26.5 1.1 17 2-19 1-17 (17)
73 KOG3864 Uncharacterized conser 94.1 0.0045 9.9E-08 49.2 -2.7 65 132-200 122-189 (221)
74 PF13306 LRR_5: Leucine rich r 92.9 0.86 1.9E-05 33.5 8.1 99 133-254 10-110 (129)
75 smart00369 LRR_TYP Leucine-ric 91.6 0.17 3.7E-06 25.9 2.0 20 1-21 1-20 (26)
76 smart00370 LRR Leucine-rich re 91.6 0.17 3.7E-06 25.9 2.0 20 1-21 1-20 (26)
77 KOG0473 Leucine-rich repeat pr 90.0 0.027 5.8E-07 46.1 -3.0 77 4-96 44-120 (326)
78 PF13306 LRR_5: Leucine rich r 87.9 2.9 6.2E-05 30.7 6.9 89 160-267 8-99 (129)
79 KOG0473 Leucine-rich repeat pr 87.1 0.062 1.3E-06 44.0 -2.7 58 3-61 66-123 (326)
80 smart00367 LRR_CC Leucine-rich 85.9 0.52 1.1E-05 24.1 1.3 16 164-179 2-17 (26)
81 PF13516 LRR_6: Leucine Rich r 80.1 1 2.2E-05 22.4 1.0 15 1-16 1-15 (24)
82 smart00364 LRR_BAC Leucine-ric 76.2 1.8 3.9E-05 22.3 1.2 17 3-20 3-19 (26)
83 KOG3763 mRNA export factor TAP 72.4 0.94 2E-05 41.8 -0.6 12 186-197 243-254 (585)
84 smart00365 LRR_SD22 Leucine-ri 70.8 3.9 8.4E-05 21.0 1.7 14 2-16 2-15 (26)
85 smart00368 LRR_RI Leucine rich 62.5 6.3 0.00014 20.5 1.6 14 2-16 2-15 (28)
86 KOG3763 mRNA export factor TAP 56.8 5.2 0.00011 37.2 1.0 90 132-229 215-307 (585)
87 KOG4308 LRR-containing protein 55.0 0.13 2.9E-06 47.4 -9.5 35 4-39 89-128 (478)
88 PF07725 LRR_3: Leucine Rich R 24.0 35 0.00075 16.3 0.4 14 28-41 2-15 (20)
No 1
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.79 E-value=2.3e-21 Score=173.04 Aligned_cols=229 Identities=19% Similarity=0.239 Sum_probs=138.8
Q ss_pred ccEEeCCCCCCccccchh-hhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeecccccccccccc
Q 044279 4 LAVLDLSYNFDLVELPEA-IGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAG 82 (305)
Q Consensus 4 L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~ 82 (305)
+-+|++|+| .+..+|.. +-++..|-+||+|+|++..+|+.+.++.+|++|.+++|++ ..+-...
T Consensus 128 ~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL--------------~hfQLrQ 192 (1255)
T KOG0444|consen 128 SIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPL--------------NHFQLRQ 192 (1255)
T ss_pred cEEEEcccC-ccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChh--------------hHHHHhc
Confidence 344555555 44555433 4455555555555555555555555555555555555543 2222334
Q ss_pred ccCccCccceeEEEeecCcccc-cccccCCCccccceEEEEEcCCCcccc---ccCCCccEEEEeceecceecccccCCC
Q 044279 83 LESLENIHDISITLCFVDTHAF-CRFQSSPKLQSCVKRLTVASPWFSSLD---FRMDHLETLEIVDCSLESINIYFGDQG 158 (305)
Q Consensus 83 l~~l~~L~~L~l~~~~~~~~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~L~~L~l~~~~l~~~~~~~~~~~ 158 (305)
+..|++|+.|.+++.+.+...+ +++..+ .+|..+++++|.+..+| ..+++|+.|++++|.++++....
T Consensus 193 LPsmtsL~vLhms~TqRTl~N~Ptsld~l----~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~---- 264 (1255)
T KOG0444|consen 193 LPSMTSLSVLHMSNTQRTLDNIPTSLDDL----HNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTE---- 264 (1255)
T ss_pred CccchhhhhhhcccccchhhcCCCchhhh----hhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccH----
Confidence 4445555555555422222111 112222 23666666666666666 55666677777766666665443
Q ss_pred cccCCCccceEeeeCCCCCccCC-cCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCc
Q 044279 159 RTYCFRNLRHLSVKDCHFMTDLK-WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLT 237 (305)
Q Consensus 159 ~~~~~~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 237 (305)
..-.+|++|+++.| .++.+| .+..+++|+.|.+.+|.. ...+++..+|.+.+|+.+..+++ .++
T Consensus 265 --~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~NkL-----------~FeGiPSGIGKL~~Levf~aanN-~LE 329 (1255)
T KOG0444|consen 265 --GEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNKL-----------TFEGIPSGIGKLIQLEVFHAANN-KLE 329 (1255)
T ss_pred --HHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccCcc-----------cccCCccchhhhhhhHHHHhhcc-ccc
Confidence 33456667777766 666555 455667777777666543 45566678888999999988887 888
Q ss_pred eecCCCCCCCCCceEEeeCCCCCCCCCCCCcccc
Q 044279 238 SICCRAVPLPSLKTISVYDCPGLRKLPLNSGSAK 271 (305)
Q Consensus 238 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 271 (305)
-+|.+.+.|++|+.|.+ +|+.+..+|.+|..++
T Consensus 330 lVPEglcRC~kL~kL~L-~~NrLiTLPeaIHlL~ 362 (1255)
T KOG0444|consen 330 LVPEGLCRCVKLQKLKL-DHNRLITLPEAIHLLP 362 (1255)
T ss_pred cCchhhhhhHHHHHhcc-cccceeechhhhhhcC
Confidence 88888888899999998 5778888888887775
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.78 E-value=6.9e-19 Score=175.29 Aligned_cols=174 Identities=18% Similarity=0.241 Sum_probs=79.4
Q ss_pred CcccEEeCCCCCCccccchhhhcccccccccccCCccc-cCCcccccccccceeeccccceeeceEEEeecccccccccc
Q 044279 2 HALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIR-ELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVL 80 (305)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~ 80 (305)
++|++|++++|..-+.+|..++++++|++|++++|.+. .+|..++++++|++|++++|.+ ....+
T Consensus 140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l--------------~~~~p 205 (968)
T PLN00113 140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQL--------------VGQIP 205 (968)
T ss_pred CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCC--------------cCcCC
Confidence 34455555555211244555555566666666555543 4555555566666666655543 22344
Q ss_pred ccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCc-ccc---ccCCCccEEEEeceecce-eccccc
Q 044279 81 AGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFS-SLD---FRMDHLETLEIVDCSLES-INIYFG 155 (305)
Q Consensus 81 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~-~~~---~~~~~L~~L~l~~~~l~~-~~~~~~ 155 (305)
..+..+++|+.|++.++.........+..+ .+|++|+++.+.+. ..+ ..+++|+.|++++|.+.. ++..+
T Consensus 206 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l----~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l- 280 (968)
T PLN00113 206 RELGQMKSLKWIYLGYNNLSGEIPYEIGGL----TSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSI- 280 (968)
T ss_pred hHHcCcCCccEEECcCCccCCcCChhHhcC----CCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhH-
Confidence 455555555555555421111111112222 22555555533222 222 445555555555555332 22121
Q ss_pred CCCcccCCCccceEeeeCCCCCccCC-cCCCCCCCCEEEEecccc
Q 044279 156 DQGRTYCFRNLRHLSVKDCHFMTDLK-WIRCAPNLQFLYVSDCQV 199 (305)
Q Consensus 156 ~~~~~~~~~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~l~~~~~ 199 (305)
..+++|+.|++++|.....+| .+.++++|+.|++++|..
T Consensus 281 -----~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~ 320 (968)
T PLN00113 281 -----FSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNF 320 (968)
T ss_pred -----hhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCcc
Confidence 344555555555552222222 234455555555555443
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.78 E-value=2.3e-18 Score=172.87 Aligned_cols=125 Identities=22% Similarity=0.267 Sum_probs=85.5
Q ss_pred CCccEEEEecee-cceecccccCCCcccCCCccceEeeeCCCCCccCCcCCCCCCCCEEEEeccccccccccccCCC---
Q 044279 135 DHLETLEIVDCS-LESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESP--- 210 (305)
Q Consensus 135 ~~L~~L~l~~~~-l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--- 210 (305)
++|+.|++++|. +..+|..+ ..+++|+.|++++|..++.+|....+++|++|++++|..+..++......
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si------~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L 851 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSI------QNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDL 851 (1153)
T ss_pred ccchheeCCCCCCccccChhh------hCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEe
Confidence 355666666655 44555443 56777888888877777777654467778888888877666554321111
Q ss_pred -----CCccccccccccCccceeeccCcccCceecCCCCCCCCCceEEeeCCCCCCCCCC
Q 044279 211 -----GTSEIEESHHFLSNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKLPL 265 (305)
Q Consensus 211 -----~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 265 (305)
.-..++..+..+++|+.|++++|..++.++.....+++|+.+++++|+.+..++.
T Consensus 852 ~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l 911 (1153)
T PLN03210 852 NLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASW 911 (1153)
T ss_pred ECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccC
Confidence 1123444667788899999999988888888777888899999999988876543
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.77 E-value=1.4e-18 Score=173.10 Aligned_cols=247 Identities=19% Similarity=0.198 Sum_probs=149.0
Q ss_pred CCcccEEeCCCCCCccccchhhhcccccccccccCCccc-cCCcccccccccceeeccccceeeceEEEeeccccccccc
Q 044279 1 MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIR-ELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTV 79 (305)
Q Consensus 1 l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~ 79 (305)
+++|++|++++|...+.+|..++++++|++|++++|.+. .+|..++.+++|++|++++|.+ ....
T Consensus 163 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l--------------~~~~ 228 (968)
T PLN00113 163 FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL--------------SGEI 228 (968)
T ss_pred CCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCcc--------------CCcC
Confidence 578999999999444578888999999999999999876 7888899999999999999875 3456
Q ss_pred cccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCc-ccc---ccCCCccEEEEeceecceeccccc
Q 044279 80 LAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFS-SLD---FRMDHLETLEIVDCSLESINIYFG 155 (305)
Q Consensus 80 ~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~-~~~---~~~~~L~~L~l~~~~l~~~~~~~~ 155 (305)
+..+..+++|+.|++..|.........+..+ .+|+.|+++.+.+. ..+ ..+++|+.|++++|.+.......
T Consensus 229 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l----~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~- 303 (968)
T PLN00113 229 PYEIGGLTSLNHLDLVYNNLTGPIPSSLGNL----KNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPEL- 303 (968)
T ss_pred ChhHhcCCCCCEEECcCceeccccChhHhCC----CCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChh-
Confidence 6777888888888887743222222223222 23777777744332 232 55667777777777644322222
Q ss_pred CCCcccCCCccceEeeeCCCCCccCC-cCCCCCCCCEEEEeccccccccccccCCC------------CCcccccccccc
Q 044279 156 DQGRTYCFRNLRHLSVKDCHFMTDLK-WIRCAPNLQFLYVSDCQVLSEIIGTYESP------------GTSEIEESHHFL 222 (305)
Q Consensus 156 ~~~~~~~~~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~ 222 (305)
+..+++|+.|++.+|......+ .+..+++|+.|++++|.....++...... -....+..+..+
T Consensus 304 ----~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~ 379 (968)
T PLN00113 304 ----VIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSS 379 (968)
T ss_pred ----HcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCc
Confidence 1456667777777663322332 35566667777776655433333200000 000011133344
Q ss_pred CccceeeccCcccCceecCCCCCCCCCceEEeeCCCCCCCCCCCCccc
Q 044279 223 SNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKLPLNSGSA 270 (305)
Q Consensus 223 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 270 (305)
++|+.|++++|.-...++.....+++|+.|++++|.....+|..+..+
T Consensus 380 ~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l 427 (968)
T PLN00113 380 GNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKL 427 (968)
T ss_pred CCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcC
Confidence 555555555553223344444567777888877775544555554444
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.75 E-value=1.7e-19 Score=159.80 Aligned_cols=246 Identities=17% Similarity=0.124 Sum_probs=144.0
Q ss_pred CcccEEeCCCCCCccccch-hhhcccccccccccCCccccCCcc-cccccccceeeccccceeeceEE------------
Q 044279 2 HALAVLDLSYNFDLVELPE-AIGKLINLCHLNLSNTKIRELPAG-IKYLKNLKILRLDVFSWFSTELV------------ 67 (305)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~------------ 67 (305)
.++++|+|++| .++.+.. .+..+.+|..|.++.|++..+|.. |+++++|+.|++..|++..++.+
T Consensus 173 ~ni~~L~La~N-~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlk 251 (873)
T KOG4194|consen 173 VNIKKLNLASN-RITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLK 251 (873)
T ss_pred CCceEEeeccc-cccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhh
Confidence 36778888888 7777653 377777888888888888888765 67788888888888876433111
Q ss_pred EeeccccccccccccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc----ccCCCccEEEEe
Q 044279 68 ALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD----FRMDHLETLEIV 143 (305)
Q Consensus 68 l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~L~~L~l~ 143 (305)
++-+++.. -.-..+..|.++++|++..+......-..+.++.. |+.|+++.|.++.+. ..+++|++|+++
T Consensus 252 lqrN~I~k--L~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~----L~~L~lS~NaI~rih~d~WsftqkL~~LdLs 325 (873)
T KOG4194|consen 252 LQRNDISK--LDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTS----LEQLDLSYNAIQRIHIDSWSFTQKLKELDLS 325 (873)
T ss_pred hhhcCccc--ccCcceeeecccceeecccchhhhhhcccccccch----hhhhccchhhhheeecchhhhcccceeEecc
Confidence 11111100 00112334444445555441111111112333322 666666666555544 455667777776
Q ss_pred ceecceecccccCCCcccCCCccceEeeeCCCCCccCC--cCCCCCCCCEEEEeccccccccccccCCCCCccccccccc
Q 044279 144 DCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK--WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHF 221 (305)
Q Consensus 144 ~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (305)
.|.++.++...+ ..+..|+.|+|+.| +++.+. .+..+++|++|+|+.|..--.+... ...+.+
T Consensus 326 ~N~i~~l~~~sf-----~~L~~Le~LnLs~N-si~~l~e~af~~lssL~~LdLr~N~ls~~IEDa---------a~~f~g 390 (873)
T KOG4194|consen 326 SNRITRLDEGSF-----RVLSQLEELNLSHN-SIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDA---------AVAFNG 390 (873)
T ss_pred ccccccCChhHH-----HHHHHhhhhccccc-chHHHHhhHHHHhhhhhhhcCcCCeEEEEEecc---------hhhhcc
Confidence 666666665543 55666666777666 555553 3456677777777775422111110 124567
Q ss_pred cCccceeeccCcccCceecCCCC-CCCCCceEEeeCCCCCCCCCCCCccc
Q 044279 222 LSNLMVIDLQHLPSLTSICCRAV-PLPSLKTISVYDCPGLRKLPLNSGSA 270 (305)
Q Consensus 222 ~~~L~~L~l~~~~~l~~~~~~~~-~~~~L~~L~l~~c~~l~~~~~~~~~~ 270 (305)
+++|+.|.+.++ +++.++.... +++.|++|++.+++....-|..+.+.
T Consensus 391 l~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m 439 (873)
T KOG4194|consen 391 LPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM 439 (873)
T ss_pred chhhhheeecCc-eeeecchhhhccCcccceecCCCCcceeecccccccc
Confidence 888888888887 7777776543 68888888887776554445544443
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.73 E-value=2.8e-17 Score=165.18 Aligned_cols=47 Identities=23% Similarity=0.381 Sum_probs=30.4
Q ss_pred cccccCccceeeccCcccCceecCCCCCCCCCceEEeeCCCCCCCCCC
Q 044279 218 SHHFLSNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKLPL 265 (305)
Q Consensus 218 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 265 (305)
.++++++|+.|+|++|..++.+|... .+++|+.|++++|..++.+|.
T Consensus 797 si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~ 843 (1153)
T PLN03210 797 SIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD 843 (1153)
T ss_pred hhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc
Confidence 55667777777777776666666543 566677777777766655543
No 7
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.68 E-value=3e-17 Score=158.14 Aligned_cols=282 Identities=29% Similarity=0.433 Sum_probs=189.1
Q ss_pred CCcccEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeecccccccccc
Q 044279 1 MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVL 80 (305)
Q Consensus 1 l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~ 80 (305)
||.|++||+++|....++|..|+.+.|||||+++.+.++.+|.++++++.|++|++..+.... ..+
T Consensus 570 m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~--------------~~~ 635 (889)
T KOG4658|consen 570 LPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLE--------------SIP 635 (889)
T ss_pred CcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccc--------------ccc
Confidence 689999999999888999999999999999999999999999999999999999999876321 112
Q ss_pred ccccCccCccceeEEEee------------------------cCcccccccccCCCccccceEEEEEcCCCc-ccc--cc
Q 044279 81 AGLESLENIHDISITLCF------------------------VDTHAFCRFQSSPKLQSCVKRLTVASPWFS-SLD--FR 133 (305)
Q Consensus 81 ~~l~~l~~L~~L~l~~~~------------------------~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~-~~~--~~ 133 (305)
.....+.+|+.|.+...- ......+.+..+..+....+.+.+.+.... ... ..
T Consensus 636 ~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~ 715 (889)
T KOG4658|consen 636 GILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGS 715 (889)
T ss_pred chhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeeccccc
Confidence 223335555555544410 111111222222221112222222211111 111 77
Q ss_pred CCCccEEEEeceecceecccccCCCcccC-CCccceEeeeCCCCCccCCcCCCCCCCCEEEEeccccccccccccCCCCC
Q 044279 134 MDHLETLEIVDCSLESINIYFGDQGRTYC-FRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGT 212 (305)
Q Consensus 134 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~~-~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 212 (305)
+.+|+.|.+.+|.+.++............ ++++..+.+.+|....++.|..-.|+|+.|.+..|..++++++..+....
T Consensus 716 l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~ 795 (889)
T KOG4658|consen 716 LGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLE 795 (889)
T ss_pred ccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhh
Confidence 88999999999986555443322111122 66788888888888888877777899999999999999988875443111
Q ss_pred ccccccccccCcccee-eccCcccCceecCCCCCCCCCceEEeeCCCCCCCCCCCCcccc-Cc-CceEe-CCcccccccc
Q 044279 213 SEIEESHHFLSNLMVI-DLQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKLPLNSGSAK-NS-LNAIR-GSREWWDQLE 288 (305)
Q Consensus 213 ~~~~~~~~~~~~L~~L-~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~-~~-~~~i~-~~~~~~~~l~ 288 (305)
.. ....-+.++..+ .+.+.+.+.++.+....++.|+.+.+..||+++.+|....... .+ -.... ....|...+.
T Consensus 796 l~--~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~~~~~~v~ 873 (889)
T KOG4658|consen 796 LK--ELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDGEWLEGVY 873 (889)
T ss_pred cc--cEEecccccccceeeecCCCCceeEecccCccchhheehhcCcccccCccccccceeccccceeecCCccceeeEE
Confidence 00 012345566666 4666667777777777788899999999999999999876655 22 23333 3555788899
Q ss_pred cCcccccccc
Q 044279 289 WEDEDTKNVF 298 (305)
Q Consensus 289 ~~~~~~~~~~ 298 (305)
|.+.+++..+
T Consensus 874 ~~~~~~~~~~ 883 (889)
T KOG4658|consen 874 WEDELTKLRF 883 (889)
T ss_pred ehhhhhhhhc
Confidence 9999888766
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.68 E-value=6.2e-19 Score=157.70 Aligned_cols=245 Identities=19% Similarity=0.226 Sum_probs=176.8
Q ss_pred CCcccEEeCCCCCCcc--ccchhhhcccccccccccCCccccCCcccccccccceeeccccceeec---------eEEEe
Q 044279 1 MHALAVLDLSYNFDLV--ELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFST---------ELVAL 69 (305)
Q Consensus 1 l~~L~~L~l~~~~~~~--~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~---------~~~l~ 69 (305)
+|.||.+.++.| .++ .+|..+.++..|..||+|+|++.++|.++...+++..|++++|.+..+ +++..
T Consensus 77 Lp~LRsv~~R~N-~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfL 155 (1255)
T KOG0444|consen 77 LPRLRSVIVRDN-NLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFL 155 (1255)
T ss_pred chhhHHHhhhcc-ccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhh
Confidence 356666777776 544 567777777777777777777777777777777777777777776554 11111
Q ss_pred eccccccccccccccCccCccceeEEEeecCcccccccccCCCccccceEEEEE-c-CCCcccc---ccCCCccEEEEec
Q 044279 70 HHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVA-S-PWFSSLD---FRMDHLETLEIVD 144 (305)
Q Consensus 70 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~-~-~~~~~~~---~~~~~L~~L~l~~ 144 (305)
..+....+.+|+.+.++.+|+.|.+++++.....+..+.++.. |+.|.++ + ..+..+| ..+.+|..++++.
T Consensus 156 DLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmts----L~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~ 231 (1255)
T KOG0444|consen 156 DLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTS----LSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE 231 (1255)
T ss_pred ccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchh----hhhhhcccccchhhcCCCchhhhhhhhhccccc
Confidence 1111226778889999999999999885545555666666655 8888888 3 3455666 6788899999999
Q ss_pred eecceecccccCCCcccCCCccceEeeeCCCCCccCC-cCCCCCCCCEEEEeccccccccccccCCCCCccccccccccC
Q 044279 145 CSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK-WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLS 223 (305)
Q Consensus 145 ~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (305)
|+++.+|... ..+++|++|+|++| .++.+. ..+...+|++|+++.|. +..+|. .+-.++
T Consensus 232 N~Lp~vPecl------y~l~~LrrLNLS~N-~iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP~------------avcKL~ 291 (1255)
T KOG0444|consen 232 NNLPIVPECL------YKLRNLRRLNLSGN-KITELNMTEGEWENLETLNLSRNQ-LTVLPD------------AVCKLT 291 (1255)
T ss_pred cCCCcchHHH------hhhhhhheeccCcC-ceeeeeccHHHHhhhhhhccccch-hccchH------------HHhhhH
Confidence 9888888776 57899999999998 777664 34566789999999954 555554 566788
Q ss_pred ccceeeccCcc-cCceecCCCCCCCCCceEEeeCCCCCCCCCCCCcccc
Q 044279 224 NLMVIDLQHLP-SLTSICCRAVPLPSLKTISVYDCPGLRKLPLNSGSAK 271 (305)
Q Consensus 224 ~L~~L~l~~~~-~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 271 (305)
+|+.|.+.++. ..+.+|.+++.+..|+++... ++++.-+|.++....
T Consensus 292 kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aa-nN~LElVPEglcRC~ 339 (1255)
T KOG0444|consen 292 KLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAA-NNKLELVPEGLCRCV 339 (1255)
T ss_pred HHHHHHhccCcccccCCccchhhhhhhHHHHhh-ccccccCchhhhhhH
Confidence 99998888872 235788888888889988885 558888899888766
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.67 E-value=4.7e-18 Score=144.68 Aligned_cols=239 Identities=19% Similarity=0.197 Sum_probs=152.8
Q ss_pred CCcccEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccceeec--eEE-----------
Q 044279 1 MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFST--ELV----------- 67 (305)
Q Consensus 1 l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~--~~~----------- 67 (305)
++.+.+||++.| +++++|++++.+++|.+||+++|.++.+|..+|+| +|+.|.+.+|++.++ +.+
T Consensus 251 L~~l~vLDLRdN-klke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyL 328 (565)
T KOG0472|consen 251 LNSLLVLDLRDN-KLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYL 328 (565)
T ss_pred cccceeeecccc-ccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHH
Confidence 467889999999 99999999999999999999999999999999999 999999999987554 222
Q ss_pred ---E--eeccc---------cccccccccccCccCccceeEEEeecCcccccc-cccCCCccccceEEEEEcCCCcccc-
Q 044279 68 ---A--LHHNF---------CCATTVLAGLESLENIHDISITLCFVDTHAFCR-FQSSPKLQSCVKRLTVASPWFSSLD- 131 (305)
Q Consensus 68 ---l--~~~~~---------~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~- 131 (305)
. .|.+. +.....++....+.+.+.|+++. .+...+++ ++...+- .-+.+++++-|.+..+|
T Consensus 329 rs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~--~qlt~VPdEVfea~~~-~~Vt~VnfskNqL~elPk 405 (565)
T KOG0472|consen 329 RSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSD--KQLTLVPDEVFEAAKS-EIVTSVNFSKNQLCELPK 405 (565)
T ss_pred HHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccc--cccccCCHHHHHHhhh-cceEEEecccchHhhhhh
Confidence 0 01111 11222334445566777777766 44333332 1111110 11334444433332222
Q ss_pred --------------------------ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCCcCCC
Q 044279 132 --------------------------FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLKWIRC 185 (305)
Q Consensus 132 --------------------------~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~ 185 (305)
..+++|.-|++++|.+.++|.++ ..+-.|+.|++++| +...+|-+..
T Consensus 406 ~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~------~~lv~Lq~LnlS~N-rFr~lP~~~y 478 (565)
T KOG0472|consen 406 RLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEM------GSLVRLQTLNLSFN-RFRMLPECLY 478 (565)
T ss_pred hhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchhh------hhhhhhheeccccc-ccccchHHHh
Confidence 55566666666666666666554 23444666666666 3233332211
Q ss_pred -CCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCceecCCCCCCCCCceEEeeCCCCCCCCC
Q 044279 186 -APNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKLP 264 (305)
Q Consensus 186 -~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 264 (305)
...++.+- ..+++++.+++ ..+.+|.+|..|++..+ .+..+|...+.|++|++|.++|+|.- .|
T Consensus 479 ~lq~lEtll-as~nqi~~vd~-----------~~l~nm~nL~tLDL~nN-dlq~IPp~LgnmtnL~hLeL~gNpfr--~P 543 (565)
T KOG0472|consen 479 ELQTLETLL-ASNNQIGSVDP-----------SGLKNMRNLTTLDLQNN-DLQQIPPILGNMTNLRHLELDGNPFR--QP 543 (565)
T ss_pred hHHHHHHHH-hccccccccCh-----------HHhhhhhhcceeccCCC-chhhCChhhccccceeEEEecCCccC--CC
Confidence 12233332 33344555554 34789999999999998 89999999999999999999998743 44
Q ss_pred CC
Q 044279 265 LN 266 (305)
Q Consensus 265 ~~ 266 (305)
.+
T Consensus 544 r~ 545 (565)
T KOG0472|consen 544 RH 545 (565)
T ss_pred HH
Confidence 43
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.63 E-value=2.2e-16 Score=140.39 Aligned_cols=235 Identities=18% Similarity=0.135 Sum_probs=159.1
Q ss_pred ccEEeCCCCCCccccc-hhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeecccccccccccc
Q 044279 4 LAVLDLSYNFDLVELP-EAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAG 82 (305)
Q Consensus 4 L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~ 82 (305)
-+.|++++| .+.++. ..|.++++|+.+.+.+|.+..+|...+-..+|+.|++..|.+. ....++
T Consensus 80 t~~LdlsnN-kl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~--------------sv~se~ 144 (873)
T KOG4194|consen 80 TQTLDLSNN-KLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLIS--------------SVTSEE 144 (873)
T ss_pred eeeeecccc-ccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccc--------------cccHHH
Confidence 356999999 888774 5689999999999999999999987777778999999999863 334567
Q ss_pred ccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc----ccCCCccEEEEeceecceecccccCCC
Q 044279 83 LESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD----FRMDHLETLEIVDCSLESINIYFGDQG 158 (305)
Q Consensus 83 l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~L~~L~l~~~~l~~~~~~~~~~~ 158 (305)
+..++.|+.|+++. +....++.-... -..++++|+++.|.++++. ..+.+|-.|.++.|.++.+|...+
T Consensus 145 L~~l~alrslDLSr--N~is~i~~~sfp--~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~F--- 217 (873)
T KOG4194|consen 145 LSALPALRSLDLSR--NLISEIPKPSFP--AKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSF--- 217 (873)
T ss_pred HHhHhhhhhhhhhh--chhhcccCCCCC--CCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHh---
Confidence 88888899999988 333322221111 1145888999888887777 566788888888888888887763
Q ss_pred cccCCCccceEeeeCCCCCccC--CcCCCCCCCCEEEEeccccccccccccCCC---------CCcc----ccccccccC
Q 044279 159 RTYCFRNLRHLSVKDCHFMTDL--KWIRCAPNLQFLYVSDCQVLSEIIGTYESP---------GTSE----IEESHHFLS 223 (305)
Q Consensus 159 ~~~~~~~L~~L~L~~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---------~~~~----~~~~~~~~~ 223 (305)
..+++|+.|+|..| ++... ..|.++++|+.|.+..|. +..+....+.- +... -..++-+++
T Consensus 218 --k~L~~L~~LdLnrN-~irive~ltFqgL~Sl~nlklqrN~-I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt 293 (873)
T KOG4194|consen 218 --KRLPKLESLDLNRN-RIRIVEGLTFQGLPSLQNLKLQRND-ISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLT 293 (873)
T ss_pred --hhcchhhhhhcccc-ceeeehhhhhcCchhhhhhhhhhcC-cccccCcceeeecccceeecccchhhhhhcccccccc
Confidence 66888888888887 55443 235566666666666544 22221111110 0000 012455778
Q ss_pred ccceeeccCcccCceecC-CCCCCCCCceEEeeCCCCCCCCCCC
Q 044279 224 NLMVIDLQHLPSLTSICC-RAVPLPSLKTISVYDCPGLRKLPLN 266 (305)
Q Consensus 224 ~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~ 266 (305)
+|+.|+++++ .+.++.. .-..+++|++|+++.+ ++.++|.+
T Consensus 294 ~L~~L~lS~N-aI~rih~d~WsftqkL~~LdLs~N-~i~~l~~~ 335 (873)
T KOG4194|consen 294 SLEQLDLSYN-AIQRIHIDSWSFTQKLKELDLSSN-RITRLDEG 335 (873)
T ss_pred hhhhhccchh-hhheeecchhhhcccceeEecccc-ccccCChh
Confidence 8888888887 5655432 1234688888888654 67777655
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.62 E-value=2.6e-18 Score=146.29 Aligned_cols=228 Identities=23% Similarity=0.285 Sum_probs=168.6
Q ss_pred CCcccEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeecccccccccc
Q 044279 1 MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVL 80 (305)
Q Consensus 1 l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~ 80 (305)
++.|.+|++..| ....+|++++.+..++.++.++++++.+|..++.+.+|++++.+.+. ....+
T Consensus 67 L~~l~vl~~~~n-~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~---------------~~el~ 130 (565)
T KOG0472|consen 67 LACLTVLNVHDN-KLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNE---------------LKELP 130 (565)
T ss_pred ccceeEEEeccc-hhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccc---------------eeecC
Confidence 356778888988 88889999999999999999999999999999999999999998887 45677
Q ss_pred ccccCccCccceeEEEeecCcccc-cccccCCCccccceEEEEEcCCCcccc---ccCCCccEEEEeceecceecccccC
Q 044279 81 AGLESLENIHDISITLCFVDTHAF-CRFQSSPKLQSCVKRLTVASPWFSSLD---FRMDHLETLEIVDCSLESINIYFGD 156 (305)
Q Consensus 81 ~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~L~~L~l~~~~l~~~~~~~~~ 156 (305)
+.++.+-.|..++-.. +...+. +++.... ++..+.+.++.+...+ ..+..|++++...|.++.+|...
T Consensus 131 ~~i~~~~~l~dl~~~~--N~i~slp~~~~~~~----~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~l-- 202 (565)
T KOG0472|consen 131 DSIGRLLDLEDLDATN--NQISSLPEDMVNLS----KLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPEL-- 202 (565)
T ss_pred chHHHHhhhhhhhccc--cccccCchHHHHHH----HHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhh--
Confidence 7788887777777665 333222 2233332 2555666666666665 44677888887777688888776
Q ss_pred CCcccCCCccceEeeeCCCCCccCCcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccC
Q 044279 157 QGRTYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSL 236 (305)
Q Consensus 157 ~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 236 (305)
+.+.+|..|+|..| ++..+|.|.+|..|++++++. +.++.++. +....+++|..||+.++ .+
T Consensus 203 ----g~l~~L~~LyL~~N-ki~~lPef~gcs~L~Elh~g~-N~i~~lpa-----------e~~~~L~~l~vLDLRdN-kl 264 (565)
T KOG0472|consen 203 ----GGLESLELLYLRRN-KIRFLPEFPGCSLLKELHVGE-NQIEMLPA-----------EHLKHLNSLLVLDLRDN-KL 264 (565)
T ss_pred ----cchhhhHHHHhhhc-ccccCCCCCccHHHHHHHhcc-cHHHhhHH-----------HHhcccccceeeecccc-cc
Confidence 56788888888888 777778888888888888877 44555554 23447788888888887 78
Q ss_pred ceecCCCCCCCCCceEEeeCCCCCCCCCCCCcccc
Q 044279 237 TSICCRAVPLPSLKTISVYDCPGLRKLPLNSGSAK 271 (305)
Q Consensus 237 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 271 (305)
+++|.+.+-+.+|++|++++ +.+..+|..++.+.
T Consensus 265 ke~Pde~clLrsL~rLDlSN-N~is~Lp~sLgnlh 298 (565)
T KOG0472|consen 265 KEVPDEICLLRSLERLDLSN-NDISSLPYSLGNLH 298 (565)
T ss_pred ccCchHHHHhhhhhhhcccC-CccccCCcccccce
Confidence 88887777777788888854 46777777766653
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.54 E-value=1.5e-16 Score=147.82 Aligned_cols=219 Identities=22% Similarity=0.242 Sum_probs=146.4
Q ss_pred CcccEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeeccccccccccc
Q 044279 2 HALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLA 81 (305)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~ 81 (305)
.+|++++++.+ .+..+|+.++.+.+|+.+++.+|++.++|..+..+.+|+.|.+..|. ...+++
T Consensus 241 ~nl~~~dis~n-~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~ne---------------l~yip~ 304 (1081)
T KOG0618|consen 241 LNLQYLDISHN-NLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNE---------------LEYIPP 304 (1081)
T ss_pred ccceeeecchh-hhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhh---------------hhhCCC
Confidence 36788888888 77888877888888888888888888888888888888888888887 567788
Q ss_pred cccCccCccceeEEEeecCcccccccccC-C----------------------CccccceEEEEEcCCCccc--c--ccC
Q 044279 82 GLESLENIHDISITLCFVDTHAFCRFQSS-P----------------------KLQSCVKRLTVASPWFSSL--D--FRM 134 (305)
Q Consensus 82 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~~-~----------------------~~~~~L~~L~l~~~~~~~~--~--~~~ 134 (305)
.+...++|++|++.. +....++...-. . ...+.|+.|++..|.+++- + ..+
T Consensus 305 ~le~~~sL~tLdL~~--N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~ 382 (1081)
T KOG0618|consen 305 FLEGLKSLRTLDLQS--NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNF 382 (1081)
T ss_pred cccccceeeeeeehh--ccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccc
Confidence 888889999999888 444333321110 0 0011244444443444322 2 556
Q ss_pred CCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCC-cCCCCCCCCEEEEeccccccccccccCCCCCc
Q 044279 135 DHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK-WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTS 213 (305)
Q Consensus 135 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 213 (305)
.+|+.|+++.|++..+|.... .++..|+.|+|++| +++.+| .+..+++|++|...+|. +..+|
T Consensus 383 ~hLKVLhLsyNrL~~fpas~~-----~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~ahsN~-l~~fP--------- 446 (1081)
T KOG0618|consen 383 KHLKVLHLSYNRLNSFPASKL-----RKLEELEELNLSGN-KLTTLPDTVANLGRLHTLRAHSNQ-LLSFP--------- 446 (1081)
T ss_pred cceeeeeecccccccCCHHHH-----hchHHhHHHhcccc-hhhhhhHHHHhhhhhHHHhhcCCc-eeech---------
Confidence 666777776666666665552 56666666677766 666655 34456666666666644 33333
Q ss_pred cccccccccCccceeeccCcccCceecCC-CCCCCCCceEEeeCCCC
Q 044279 214 EIEESHHFLSNLMVIDLQHLPSLTSICCR-AVPLPSLKTISVYDCPG 259 (305)
Q Consensus 214 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~c~~ 259 (305)
.+..+++|+.+|++.+ ++..+.-. ....|+|++|+++|+.+
T Consensus 447 ----e~~~l~qL~~lDlS~N-~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 447 ----ELAQLPQLKVLDLSCN-NLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred ----hhhhcCcceEEecccc-hhhhhhhhhhCCCcccceeeccCCcc
Confidence 3567889999999988 66654322 22448999999998875
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.52 E-value=4.2e-14 Score=134.12 Aligned_cols=37 Identities=22% Similarity=0.201 Sum_probs=28.4
Q ss_pred CccceeeccCcccCceecCCCCCCCCCceEEeeCCCCC
Q 044279 223 SNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCPGL 260 (305)
Q Consensus 223 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l 260 (305)
.+|+.|+++++ .++.+|.....+++|+.|++++++.-
T Consensus 422 ~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 422 SGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred hhhhhhhhccC-cccccChHHhhccCCCeEECCCCCCC
Confidence 46777888887 67778777777888999999887643
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.47 E-value=3.9e-14 Score=134.82 Aligned_cols=52 Identities=23% Similarity=0.408 Sum_probs=23.1
Q ss_pred ccEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccc
Q 044279 4 LAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFS 60 (305)
Q Consensus 4 L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~ 60 (305)
|+.|++++| .++.+|..+. .+|++|++++|+++.+|..+. .+|+.|++++|.
T Consensus 201 L~~L~Ls~N-~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~ 252 (754)
T PRK15370 201 ITTLILDNN-ELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINR 252 (754)
T ss_pred CcEEEecCC-CCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCc
Confidence 444444444 4444443322 244455555444444443332 244444444444
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.44 E-value=9.1e-13 Score=125.18 Aligned_cols=116 Identities=20% Similarity=0.224 Sum_probs=67.6
Q ss_pred ccEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeeccccccccccccc
Q 044279 4 LAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGL 83 (305)
Q Consensus 4 L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l 83 (305)
-..|+++.+ .++.+|+.+. .+|+.|++.+|++..+|.. .++|++|++++|.+. .++..
T Consensus 203 ~~~LdLs~~-~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~Lt---------------sLP~l- 260 (788)
T PRK15387 203 NAVLNVGES-GLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLT---------------SLPVL- 260 (788)
T ss_pred CcEEEcCCC-CCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccC---------------cccCc-
Confidence 456888888 7888887664 3788888888888888753 478888888888743 22221
Q ss_pred cCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCccccccCCCccEEEEeceecceec
Q 044279 84 ESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESIN 151 (305)
Q Consensus 84 ~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 151 (305)
.++|+.|++.. +....++.+ ..+|+.|+++.|.++.++..+++|+.|++++|.++.++
T Consensus 261 --p~sL~~L~Ls~--N~L~~Lp~l------p~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~L~~Lp 318 (788)
T PRK15387 261 --PPGLLELSIFS--NPLTHLPAL------PSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLP 318 (788)
T ss_pred --ccccceeeccC--Cchhhhhhc------hhhcCEEECcCCccccccccccccceeECCCCccccCC
Confidence 23556666655 332222221 12245555554444444433345555555555544433
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.43 E-value=1.9e-13 Score=130.27 Aligned_cols=203 Identities=22% Similarity=0.191 Sum_probs=149.8
Q ss_pred CcccEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeeccccccccccc
Q 044279 2 HALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLA 81 (305)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~ 81 (305)
++|++|++++| .++.+|..+. .+|+.|++++|++..+|..+. .+|++|++++|.+ ..++.
T Consensus 220 ~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L---------------~~LP~ 279 (754)
T PRK15370 220 GNIKTLYANSN-QLTSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHNKI---------------SCLPE 279 (754)
T ss_pred cCCCEEECCCC-ccccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCCcc---------------Ccccc
Confidence 47999999999 8899987654 479999999999999988765 5899999999874 34444
Q ss_pred cccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc-ccCCCccEEEEeceecceecccccCCCcc
Q 044279 82 GLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD-FRMDHLETLEIVDCSLESINIYFGDQGRT 160 (305)
Q Consensus 82 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 160 (305)
.+. .+|+.|++++ +....++. .+...|+.|+++.|.++.++ ...++|+.|++++|.++.++..+
T Consensus 280 ~l~--~sL~~L~Ls~--N~Lt~LP~-----~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~l------ 344 (754)
T PRK15370 280 NLP--EELRYLSVYD--NSIRTLPA-----HLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPASL------ 344 (754)
T ss_pred ccC--CCCcEEECCC--CccccCcc-----cchhhHHHHHhcCCccccCCccccccceeccccCCccccCChhh------
Confidence 443 4799999988 44333322 12245888999877777776 44578999999999888777332
Q ss_pred cCCCccceEeeeCCCCCccCCcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCceec
Q 044279 161 YCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSIC 240 (305)
Q Consensus 161 ~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 240 (305)
+++|+.|++++| .++.+|.- -.++|+.|++++|. +..++. .+ ...|+.|++++| .+..+|
T Consensus 345 --~~sL~~L~Ls~N-~L~~LP~~-lp~~L~~LdLs~N~-Lt~LP~------------~l--~~sL~~LdLs~N-~L~~LP 404 (754)
T PRK15370 345 --PPELQVLDVSKN-QITVLPET-LPPTITTLDVSRNA-LTNLPE------------NL--PAALQIMQASRN-NLVRLP 404 (754)
T ss_pred --cCcccEEECCCC-CCCcCChh-hcCCcCEEECCCCc-CCCCCH------------hH--HHHHHHHhhccC-CcccCc
Confidence 478999999999 66666531 14689999999976 445554 22 247899999998 677665
Q ss_pred CCC----CCCCCCceEEeeCCCC
Q 044279 241 CRA----VPLPSLKTISVYDCPG 259 (305)
Q Consensus 241 ~~~----~~~~~L~~L~l~~c~~ 259 (305)
... ..++++..|++.+++.
T Consensus 405 ~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 405 ESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred hhHHHHhhcCCCccEEEeeCCCc
Confidence 432 2457889999988763
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.41 E-value=7.7e-15 Score=136.68 Aligned_cols=211 Identities=19% Similarity=0.205 Sum_probs=153.9
Q ss_pred CCcccEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccceeec-eEE--E-------ee
Q 044279 1 MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFST-ELV--A-------LH 70 (305)
Q Consensus 1 l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~-~~~--l-------~~ 70 (305)
|.+|..++..+| .+..+|..+....+|++|++.+|.++.+|.....++.|++|++..|.+... +.+ + .+
T Consensus 263 ~~nle~l~~n~N-~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln 341 (1081)
T KOG0618|consen 263 CANLEALNANHN-RLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLN 341 (1081)
T ss_pred cccceEecccch-hHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHh
Confidence 578999999999 889999999999999999999999999998888899999999999876432 000 0 00
Q ss_pred cccccccccc-ccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc----ccCCCccEEEEece
Q 044279 71 HNFCCATTVL-AGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD----FRMDHLETLEIVDC 145 (305)
Q Consensus 71 ~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~L~~L~l~~~ 145 (305)
.........+ .+=..+..|+.|.+..|..+..-++-+.... +|+.|++++|.+..++ ..+..|++|++++|
T Consensus 342 ~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~----hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGN 417 (1081)
T KOG0618|consen 342 VSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFK----HLKVLHLSYNRLNSFPASKLRKLEELEELNLSGN 417 (1081)
T ss_pred hhhccccccccccchhhHHHHHHHHhcCcccccchhhhcccc----ceeeeeecccccccCCHHHHhchHHhHHHhcccc
Confidence 0000011111 1112234456666655323333344444433 4999999999888877 77888999999999
Q ss_pred ecceecccccCCCcccCCCccceEeeeCCCCCccCCcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCcc
Q 044279 146 SLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNL 225 (305)
Q Consensus 146 ~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 225 (305)
.++.++..+ ..++.|++|...+| .+..+|.+.+++.|+.+|++.|+ +..+.. +... -.|+|
T Consensus 418 kL~~Lp~tv------a~~~~L~tL~ahsN-~l~~fPe~~~l~qL~~lDlS~N~-L~~~~l----------~~~~-p~p~L 478 (1081)
T KOG0618|consen 418 KLTTLPDTV------ANLGRLHTLRAHSN-QLLSFPELAQLPQLKVLDLSCNN-LSEVTL----------PEAL-PSPNL 478 (1081)
T ss_pred hhhhhhHHH------HhhhhhHHHhhcCC-ceeechhhhhcCcceEEecccch-hhhhhh----------hhhC-CCccc
Confidence 999999665 67899999999998 88889989999999999999966 433322 0111 12899
Q ss_pred ceeeccCccc
Q 044279 226 MVIDLQHLPS 235 (305)
Q Consensus 226 ~~L~l~~~~~ 235 (305)
++|+++++..
T Consensus 479 kyLdlSGN~~ 488 (1081)
T KOG0618|consen 479 KYLDLSGNTR 488 (1081)
T ss_pred ceeeccCCcc
Confidence 9999999965
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.35 E-value=2e-14 Score=109.53 Aligned_cols=79 Identities=34% Similarity=0.475 Sum_probs=60.3
Q ss_pred cccEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeecccccccccccc
Q 044279 3 ALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAG 82 (305)
Q Consensus 3 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~ 82 (305)
++..|-++.| .++.+|+.|..+.+|+.|++++|+++.+|..++.++.|++|+++-|+ ....+..
T Consensus 34 ~ITrLtLSHN-Kl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr---------------l~~lprg 97 (264)
T KOG0617|consen 34 NITRLTLSHN-KLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR---------------LNILPRG 97 (264)
T ss_pred hhhhhhcccC-ceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhh---------------hhcCccc
Confidence 4556677777 77777777888888888888888888888788888888888887776 4566777
Q ss_pred ccCccCccceeEEEe
Q 044279 83 LESLENIHDISITLC 97 (305)
Q Consensus 83 l~~l~~L~~L~l~~~ 97 (305)
++.++.|+.|++.++
T Consensus 98 fgs~p~levldltyn 112 (264)
T KOG0617|consen 98 FGSFPALEVLDLTYN 112 (264)
T ss_pred cCCCchhhhhhcccc
Confidence 788888888777773
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.27 E-value=7.9e-13 Score=115.50 Aligned_cols=15 Identities=20% Similarity=-0.057 Sum_probs=7.0
Q ss_pred ccccccceeeccccc
Q 044279 46 KYLKNLKILRLDVFS 60 (305)
Q Consensus 46 ~~l~~L~~L~l~~~~ 60 (305)
+.+++|++|++++|.
T Consensus 78 ~~~~~L~~L~l~~~~ 92 (319)
T cd00116 78 TKGCGLQELDLSDNA 92 (319)
T ss_pred HhcCceeEEEccCCC
Confidence 334445555554443
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.22 E-value=1.4e-12 Score=113.96 Aligned_cols=234 Identities=18% Similarity=0.128 Sum_probs=123.0
Q ss_pred CcccEEeCCCCCCcc-------ccchhhhcccccccccccCCccc-cCCcccccccc---cceeeccccceeeceEEEee
Q 044279 2 HALAVLDLSYNFDLV-------ELPEAIGKLINLCHLNLSNTKIR-ELPAGIKYLKN---LKILRLDVFSWFSTELVALH 70 (305)
Q Consensus 2 ~~L~~L~l~~~~~~~-------~lp~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~---L~~L~l~~~~~~~~~~~l~~ 70 (305)
+.+++|+++++ .+. .++..+.++++|++|++++|.+. ..+..+..+.+ |++|++++|.+.+
T Consensus 51 ~~l~~l~l~~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~------- 122 (319)
T cd00116 51 PSLKELCLSLN-ETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGD------- 122 (319)
T ss_pred CCceEEecccc-ccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccch-------
Confidence 45788888887 444 23445677889999999988776 34444555554 9999999887531
Q ss_pred ccccccccccccccCc-cCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcc-----cc---ccCCCccEEE
Q 044279 71 HNFCCATTVLAGLESL-ENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSS-----LD---FRMDHLETLE 141 (305)
Q Consensus 71 ~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~-----~~---~~~~~L~~L~ 141 (305)
.....+...+..+ ++|+.|++.+|.........+.........|++|+++.+.+.. +. ...++|+.|+
T Consensus 123 ---~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~ 199 (319)
T cd00116 123 ---RGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLD 199 (319)
T ss_pred ---HHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEe
Confidence 0012223445566 7888888887433222222222221122347777777444431 11 3345777777
Q ss_pred EeceecceecccccCCCcccCCCccceEeeeCCCCCccCC--cC-----CCCCCCCEEEEeccccccccccccCCCCCcc
Q 044279 142 IVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK--WI-----RCAPNLQFLYVSDCQVLSEIIGTYESPGTSE 214 (305)
Q Consensus 142 l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~--~~-----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 214 (305)
+++|.+++........ ....+++|++|++++| .+++.. .+ ...+.|++|++++|.....-.. .
T Consensus 200 L~~n~i~~~~~~~l~~-~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~--------~ 269 (319)
T cd00116 200 LNNNGLTDEGASALAE-TLASLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAK--------D 269 (319)
T ss_pred ccCCccChHHHHHHHH-HhcccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHH--------H
Confidence 7777654333211100 0245667777777776 444321 11 1235677777777653211000 0
Q ss_pred ccccccccCccceeeccCcccCcee-----cCCCCCC-CCCceEEeeCC
Q 044279 215 IEESHHFLSNLMVIDLQHLPSLTSI-----CCRAVPL-PSLKTISVYDC 257 (305)
Q Consensus 215 ~~~~~~~~~~L~~L~l~~~~~l~~~-----~~~~~~~-~~L~~L~l~~c 257 (305)
+......+++|++++++++ .+... ......+ +.|++++|.+.
T Consensus 270 l~~~~~~~~~L~~l~l~~N-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 270 LAEVLAEKESLLELDLRGN-KFGEEGAQLLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred HHHHHhcCCCccEEECCCC-CCcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence 0113344567777777776 33322 1111223 56666666544
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.18 E-value=1.4e-12 Score=111.33 Aligned_cols=85 Identities=25% Similarity=0.259 Sum_probs=62.9
Q ss_pred ccCCCccceEeeeCCCCCccC--CcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCc
Q 044279 160 TYCFRNLRHLSVKDCHFMTDL--KWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLT 237 (305)
Q Consensus 160 ~~~~~~L~~L~L~~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 237 (305)
+..+++|++|+|++| .++.+ .+|.....+++|.+..|. ++.+.. ..+.++..|+.|++.++ .++
T Consensus 270 f~~L~~L~~lnlsnN-~i~~i~~~aFe~~a~l~eL~L~~N~-l~~v~~-----------~~f~~ls~L~tL~L~~N-~it 335 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNN-KITRIEDGAFEGAAELQELYLTRNK-LEFVSS-----------GMFQGLSGLKTLSLYDN-QIT 335 (498)
T ss_pred HhhcccceEeccCCC-ccchhhhhhhcchhhhhhhhcCcch-HHHHHH-----------HhhhccccceeeeecCC-eeE
Confidence 467888999999988 77776 367788889999998854 554443 35678899999999998 777
Q ss_pred eecCC-CCCCCCCceEEeeCCC
Q 044279 238 SICCR-AVPLPSLKTISVYDCP 258 (305)
Q Consensus 238 ~~~~~-~~~~~~L~~L~l~~c~ 258 (305)
.+.++ .....+|.+|++-++|
T Consensus 336 ~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 336 TVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred EEecccccccceeeeeehccCc
Confidence 66443 3467778888876655
No 22
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.14 E-value=6.3e-12 Score=104.07 Aligned_cols=194 Identities=14% Similarity=0.142 Sum_probs=120.0
Q ss_pred chhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEE--------eeccc-cccccccccccCccCc
Q 044279 19 PEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVA--------LHHNF-CCATTVLAGLESLENI 89 (305)
Q Consensus 19 p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l--------~~~~~-~~~~~~~~~l~~l~~L 89 (305)
|..+.-+++|+.+.++.|.-+.+-.-.-.=+.|+++.+.+..+....+++ ++..- +........+..+..|
T Consensus 207 ~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~L 286 (490)
T KOG1259|consen 207 SFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQEL 286 (490)
T ss_pred ccchHHhhhhheeeeeccchhheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhh
Confidence 33344455555555555533333211112245566655554433322221 11111 1122233445667778
Q ss_pred cceeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc--ccCCCccEEEEeceecceecccccCCCcccCCCccc
Q 044279 90 HDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD--FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLR 167 (305)
Q Consensus 90 ~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~ 167 (305)
+.+++++ ..+..+.+..++.+.++.|+++.|++..+. ..+++|..|++++|.++.+. ||...+.|++
T Consensus 287 telDLS~-----N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~------Gwh~KLGNIK 355 (490)
T KOG1259|consen 287 TELDLSG-----NLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECV------GWHLKLGNIK 355 (490)
T ss_pred hhccccc-----cchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhh------hhHhhhcCEe
Confidence 8888877 444555556666677888888877777666 77888888888888766555 3346788888
Q ss_pred eEeeeCCCCCccCCcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCccc
Q 044279 168 HLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPS 235 (305)
Q Consensus 168 ~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 235 (305)
+|.|+.| .+++++.++.+.+|.+|++++|+ +++... ...+|++|-|+++.+.++|-
T Consensus 356 tL~La~N-~iE~LSGL~KLYSLvnLDl~~N~-Ie~lde----------V~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 356 TLKLAQN-KIETLSGLRKLYSLVNLDLSSNQ-IEELDE----------VNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred eeehhhh-hHhhhhhhHhhhhheeccccccc-hhhHHH----------hcccccccHHHHHhhcCCCc
Confidence 8888888 78888878888888888888865 433322 13678888888888888753
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.10 E-value=3.6e-12 Score=97.27 Aligned_cols=135 Identities=23% Similarity=0.297 Sum_probs=103.5
Q ss_pred CCcccEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeecccccccccc
Q 044279 1 MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVL 80 (305)
Q Consensus 1 l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~ 80 (305)
+.+|++|++++| .+.++|..++.+++|+.|++..|++..+|.+||.++.|+.|++.+|... ...++
T Consensus 55 l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~-------------e~~lp 120 (264)
T KOG0617|consen 55 LKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLN-------------ENSLP 120 (264)
T ss_pred hhhhhhhhcccc-hhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccc-------------cccCC
Confidence 457899999999 9999999999999999999999999999999999999999999998764 45677
Q ss_pred ccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCccccccCCCccEEEEeceecceecccccCCCcc
Q 044279 81 AGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRT 160 (305)
Q Consensus 81 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 160 (305)
..+..+..|+.|++..+ ... -+.... ..+.+|+.|.+.+|++-+.|.++
T Consensus 121 gnff~m~tlralyl~dn--dfe---~lp~dv--------------------g~lt~lqil~lrdndll~lpkei------ 169 (264)
T KOG0617|consen 121 GNFFYMTTLRALYLGDN--DFE---ILPPDV--------------------GKLTNLQILSLRDNDLLSLPKEI------ 169 (264)
T ss_pred cchhHHHHHHHHHhcCC--Ccc---cCChhh--------------------hhhcceeEEeeccCchhhCcHHH------
Confidence 88888888888887762 211 111111 34666777777777765566554
Q ss_pred cCCCccceEeeeCCCCCccCC
Q 044279 161 YCFRNLRHLSVKDCHFMTDLK 181 (305)
Q Consensus 161 ~~~~~L~~L~L~~~~~l~~~~ 181 (305)
+.+..|+.|++.+| +++.+|
T Consensus 170 g~lt~lrelhiqgn-rl~vlp 189 (264)
T KOG0617|consen 170 GDLTRLRELHIQGN-RLTVLP 189 (264)
T ss_pred HHHHHHHHHhcccc-eeeecC
Confidence 45677777777777 555553
No 24
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=1.6e-11 Score=106.23 Aligned_cols=212 Identities=17% Similarity=0.182 Sum_probs=144.8
Q ss_pred ccchhhhcccccccccccCCccccCCc--ccccccccceeeccccceeeceEEEeeccccccccccccccCccCccceeE
Q 044279 17 ELPEAIGKLINLCHLNLSNTKIRELPA--GIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISI 94 (305)
Q Consensus 17 ~lp~~~~~l~~L~~L~l~~~~l~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l 94 (305)
++-..-+++.+|+.+.+.++.+...+. ....|++++.|+++.|-+.. +..+......+++|+.|.+
T Consensus 112 ki~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~n------------w~~v~~i~eqLp~Le~LNl 179 (505)
T KOG3207|consen 112 KIAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHN------------WFPVLKIAEQLPSLENLNL 179 (505)
T ss_pred HHHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHh------------HHHHHHHHHhcccchhccc
Confidence 333335788899999999998876663 68889999999999987532 5666778899999999999
Q ss_pred EEeecCcccccc-cccCCCccccceEEEEEcCCCc--ccc---ccCCCccEEEEecee-cceecccccCCCcccCCCccc
Q 044279 95 TLCFVDTHAFCR-FQSSPKLQSCVKRLTVASPWFS--SLD---FRMDHLETLEIVDCS-LESINIYFGDQGRTYCFRNLR 167 (305)
Q Consensus 95 ~~~~~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~--~~~---~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~~~~~~L~ 167 (305)
+. +....+.+ ... ...+.|+.|.++.++++ ++. ..+|.|+.|++..|. +...... ...++.|+
T Consensus 180 s~--Nrl~~~~~s~~~--~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~------~~i~~~L~ 249 (505)
T KOG3207|consen 180 SS--NRLSNFISSNTT--LLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS------TKILQTLQ 249 (505)
T ss_pred cc--ccccCCccccch--hhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch------hhhhhHHh
Confidence 88 44333221 111 13345999999933343 233 789999999999985 2211111 14578899
Q ss_pred eEeeeCCCCCccC--CcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCceecCC--C
Q 044279 168 HLSVKDCHFMTDL--KWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICCR--A 243 (305)
Q Consensus 168 ~L~L~~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~ 243 (305)
.|||++|..+..- +..+.+|.|..|.++.|. +.++.. .+.+.-+....+++|++|++..+ .+.+|+.. .
T Consensus 250 ~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~-----~d~~s~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l 322 (505)
T KOG3207|consen 250 ELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG-IASIAE-----PDVESLDKTHTFPKLEYLNISEN-NIRDWRSLNHL 322 (505)
T ss_pred hccccCCcccccccccccccccchhhhhccccC-cchhcC-----CCccchhhhcccccceeeecccC-ccccccccchh
Confidence 9999999444332 456789999999999865 444433 22222334568999999999998 55555432 2
Q ss_pred CCCCCCceEEeeCC
Q 044279 244 VPLPSLKTISVYDC 257 (305)
Q Consensus 244 ~~~~~L~~L~l~~c 257 (305)
...++|+.|.+.+.
T Consensus 323 ~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 323 RTLENLKHLRITLN 336 (505)
T ss_pred hccchhhhhhcccc
Confidence 35677788877544
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.04 E-value=1.6e-11 Score=105.05 Aligned_cols=84 Identities=14% Similarity=0.123 Sum_probs=65.2
Q ss_pred ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCC--cCCCCCCCCEEEEeccccccccccccCC
Q 044279 132 FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK--WIRCAPNLQFLYVSDCQVLSEIIGTYES 209 (305)
Q Consensus 132 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 209 (305)
..+++|++|++++|.++.+...+ +.....++.|.|..| ++..+. .|..+..|+.|++.+|+ +..+.+
T Consensus 271 ~~L~~L~~lnlsnN~i~~i~~~a-----Fe~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~N~-it~~~~---- 339 (498)
T KOG4237|consen 271 KKLPNLRKLNLSNNKITRIEDGA-----FEGAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYDNQ-ITTVAP---- 339 (498)
T ss_pred hhcccceEeccCCCccchhhhhh-----hcchhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecCCe-eEEEec----
Confidence 77899999999999988887665 377889999999999 777764 57788999999999965 555555
Q ss_pred CCCccccccccccCccceeeccCc
Q 044279 210 PGTSEIEESHHFLSNLMVIDLQHL 233 (305)
Q Consensus 210 ~~~~~~~~~~~~~~~L~~L~l~~~ 233 (305)
..+....+|.+|.+-.+
T Consensus 340 -------~aF~~~~~l~~l~l~~N 356 (498)
T KOG4237|consen 340 -------GAFQTLFSLSTLNLLSN 356 (498)
T ss_pred -------ccccccceeeeeehccC
Confidence 24456667777776553
No 26
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.03 E-value=6.8e-12 Score=107.95 Aligned_cols=60 Identities=22% Similarity=0.114 Sum_probs=33.3
Q ss_pred CCcccEEeCCCCCCcccc--chhhhcccccccccccCC-ccc--cCCcccccccccceeeccccc
Q 044279 1 MHALAVLDLSYNFDLVEL--PEAIGKLINLCHLNLSNT-KIR--ELPAGIKYLKNLKILRLDVFS 60 (305)
Q Consensus 1 l~~L~~L~l~~~~~~~~l--p~~~~~l~~L~~L~l~~~-~l~--~lp~~~~~l~~L~~L~l~~~~ 60 (305)
||++++|++.+|..+++- -+.-..+++|++|++..| .+. .+..-...+++|++|+++.|.
T Consensus 163 CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~ 227 (483)
T KOG4341|consen 163 CPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCP 227 (483)
T ss_pred CCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCc
Confidence 456666666666444421 223456666777776665 343 222223456677777777764
No 27
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.00 E-value=3.4e-10 Score=109.88 Aligned_cols=229 Identities=23% Similarity=0.257 Sum_probs=146.5
Q ss_pred CCcccEEeCCCCCC-ccccchh-hhcccccccccccCC-ccccCCcccccccccceeeccccceeeceEEEeeccccccc
Q 044279 1 MHALAVLDLSYNFD-LVELPEA-IGKLINLCHLNLSNT-KIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCAT 77 (305)
Q Consensus 1 l~~L~~L~l~~~~~-~~~lp~~-~~~l~~L~~L~l~~~-~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~ 77 (305)
+++|+.|-+.++.. +..++.. +..+++|+.||+++| .+..+|..|+.+.+||+|+++++. ..
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~---------------I~ 608 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG---------------IS 608 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC---------------cc
Confidence 35677888888732 5666644 788999999999988 678999999999999999999987 45
Q ss_pred cccccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCC--Ccccc----ccCCCccEEEEeceecceec
Q 044279 78 TVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPW--FSSLD----FRMDHLETLEIVDCSLESIN 151 (305)
Q Consensus 78 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~----~~~~~L~~L~l~~~~l~~~~ 151 (305)
.+|..+.+++.|.+|++..+. ....+ ........+|+.|.+.... .+... ..+.+|+.+..+.++. .+.
T Consensus 609 ~LP~~l~~Lk~L~~Lnl~~~~-~l~~~---~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~ 683 (889)
T KOG4658|consen 609 HLPSGLGNLKKLIYLNLEVTG-RLESI---PGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LLL 683 (889)
T ss_pred ccchHHHHHHhhheecccccc-ccccc---cchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-HhH
Confidence 789999999999999998731 11222 2222223349999888332 11111 5666777777765543 111
Q ss_pred ccccCCCcccCCCccc----eEeeeCCCCCccCCcCCCCCCCCEEEEeccccccccccccCCCCCcccccccc-ccCccc
Q 044279 152 IYFGDQGRTYCFRNLR----HLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHH-FLSNLM 226 (305)
Q Consensus 152 ~~~~~~~~~~~~~~L~----~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~ 226 (305)
... ....+|. .+.+.++...+..+.+..+.+|+.|.+.+|...+........ .... .|+++.
T Consensus 684 e~l------~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~-------~~~~~~f~~l~ 750 (889)
T KOG4658|consen 684 EDL------LGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEES-------LIVLLCFPNLS 750 (889)
T ss_pred hhh------hhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccc-------cchhhhHHHHH
Confidence 111 1222333 334444433444566778899999999998875443321000 0111 366777
Q ss_pred eeeccCcccCceecCCCCCCCCCceEEeeCCCCCCCC
Q 044279 227 VIDLQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKL 263 (305)
Q Consensus 227 ~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~ 263 (305)
.+.+..|..++...+. .-.|+|+.|.+.+|+.+.++
T Consensus 751 ~~~~~~~~~~r~l~~~-~f~~~L~~l~l~~~~~~e~~ 786 (889)
T KOG4658|consen 751 KVSILNCHMLRDLTWL-LFAPHLTSLSLVSCRLLEDI 786 (889)
T ss_pred HHHhhccccccccchh-hccCcccEEEEecccccccC
Confidence 7777777666655543 33577788887777666543
No 28
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=4.8e-12 Score=104.58 Aligned_cols=184 Identities=20% Similarity=0.249 Sum_probs=116.6
Q ss_pred cccccccccCCccc--cCCcccccccccceeeccccceeeceEEEeeccccccccccccccCccCccceeEEEeecCccc
Q 044279 26 INLCHLNLSNTKIR--ELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHA 103 (305)
Q Consensus 26 ~~L~~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 103 (305)
..|+++|+++..+. .+-.-++.|.+|+.|.+.+++. +..+...++.-.+|+.++++.+ .+..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~L--------------dD~I~~~iAkN~~L~~lnlsm~--sG~t 248 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRL--------------DDPIVNTIAKNSNLVRLNLSMC--SGFT 248 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhcccccccc--------------CcHHHHHHhccccceeeccccc--cccc
Confidence 35899999998775 4544478899999999999986 4466677888889999998873 1111
Q ss_pred ccccccCCCccccceEEEEEcCCCccccccCCCccEEEEecee-cceecccccCCCcccCCCccceEeeeCCCCC---cc
Q 044279 104 FCRFQSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCS-LESINIYFGDQGRTYCFRNLRHLSVKDCHFM---TD 179 (305)
Q Consensus 104 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l---~~ 179 (305)
--.+. .+..++..|..|++++|. .++. +.... ..--++|+.|+|+++.+. .+
T Consensus 249 ~n~~~--------------------ll~~scs~L~~LNlsWc~l~~~~-Vtv~V---~hise~l~~LNlsG~rrnl~~sh 304 (419)
T KOG2120|consen 249 ENALQ--------------------LLLSSCSRLDELNLSWCFLFTEK-VTVAV---AHISETLTQLNLSGYRRNLQKSH 304 (419)
T ss_pred hhHHH--------------------HHHHhhhhHhhcCchHhhccchh-hhHHH---hhhchhhhhhhhhhhHhhhhhhH
Confidence 10100 001457778888888887 3333 22211 123467888888877431 12
Q ss_pred CC-cCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCc-eecCCCCCCCCCceEEeeCC
Q 044279 180 LK-WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLT-SICCRAVPLPSLKTISVYDC 257 (305)
Q Consensus 180 ~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~~~L~~L~l~~c 257 (305)
+. ....||+|.+||+++|..+..--. ..+..|+.|++|.++.|-.+. .--......|+|.+|++.||
T Consensus 305 ~~tL~~rcp~l~~LDLSD~v~l~~~~~-----------~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 305 LSTLVRRCPNLVHLDLSDSVMLKNDCF-----------QEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred HHHHHHhCCceeeeccccccccCchHH-----------HHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 22 234678888888888877654221 245578888888888885543 11112456788888888777
Q ss_pred CCC
Q 044279 258 PGL 260 (305)
Q Consensus 258 ~~l 260 (305)
-.-
T Consensus 374 vsd 376 (419)
T KOG2120|consen 374 VSD 376 (419)
T ss_pred cCc
Confidence 433
No 29
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=2.1e-11 Score=100.86 Aligned_cols=156 Identities=15% Similarity=0.159 Sum_probs=107.0
Q ss_pred CccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc----ccCCCccEEEEecee-cceecccccCCCcccC
Q 044279 88 NIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD----FRMDHLETLEIVDCS-LESINIYFGDQGRTYC 162 (305)
Q Consensus 88 ~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~~~ 162 (305)
.|++++++.. ......+..+.+.|.+|+.|.+....+++-- ....+|+.|+++.|+ +++...... +.+
T Consensus 186 Rlq~lDLS~s---~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll----~~s 258 (419)
T KOG2120|consen 186 RLQHLDLSNS---VITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLL----LSS 258 (419)
T ss_pred hhHHhhcchh---heeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHH----HHh
Confidence 5777777662 2233344455555666887777755555433 667889999999998 887776655 478
Q ss_pred CCccceEeeeCCCCCccC-C-cCCC-CCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCce-
Q 044279 163 FRNLRHLSVKDCHFMTDL-K-WIRC-APNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTS- 238 (305)
Q Consensus 163 ~~~L~~L~L~~~~~l~~~-~-~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~- 238 (305)
+..|..|+|++|...++. . ...+ -++|..|+++++...- +...+..-...+|+|.+||+++|..++.
T Consensus 259 cs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl---------~~sh~~tL~~rcp~l~~LDLSD~v~l~~~ 329 (419)
T KOG2120|consen 259 CSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNL---------QKSHLSTLVRRCPNLVHLDLSDSVMLKND 329 (419)
T ss_pred hhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhh---------hhhHHHHHHHhCCceeeeccccccccCch
Confidence 999999999999433332 1 1222 2689999999976421 1111223456899999999999988874
Q ss_pred ecCCCCCCCCCceEEeeCCCC
Q 044279 239 ICCRAVPLPSLKTISVYDCPG 259 (305)
Q Consensus 239 ~~~~~~~~~~L~~L~l~~c~~ 259 (305)
.-.+...|+-|++|.+++|-.
T Consensus 330 ~~~~~~kf~~L~~lSlsRCY~ 350 (419)
T KOG2120|consen 330 CFQEFFKFNYLQHLSLSRCYD 350 (419)
T ss_pred HHHHHHhcchheeeehhhhcC
Confidence 333345799999999999953
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=2.5e-10 Score=99.02 Aligned_cols=177 Identities=19% Similarity=0.194 Sum_probs=84.9
Q ss_pred CCcccEEeCCCCCCcc---ccchhhhcccccccccccCCccccCCcc--cccccccceeeccccceeeceEEEeeccccc
Q 044279 1 MHALAVLDLSYNFDLV---ELPEAIGKLINLCHLNLSNTKIRELPAG--IKYLKNLKILRLDVFSWFSTELVALHHNFCC 75 (305)
Q Consensus 1 l~~L~~L~l~~~~~~~---~lp~~~~~l~~L~~L~l~~~~l~~lp~~--~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~ 75 (305)
|++++.||++.| .+. .+-+.+..+++|+.|+++.|++...... -..+.+|+.|.++.|.+.
T Consensus 145 ~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls------------- 210 (505)
T KOG3207|consen 145 LPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLS------------- 210 (505)
T ss_pred CCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCC-------------
Confidence 456666666666 333 2233356666666666666655422211 124556666666666543
Q ss_pred cccccccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc-----ccCCCccEEEEeceeccee
Q 044279 76 ATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD-----FRMDHLETLEIVDCSLESI 150 (305)
Q Consensus 76 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~-----~~~~~L~~L~l~~~~l~~~ 150 (305)
+..+...+..+++|+.|++.. +..... -.........|++|+|+.|.+-+++ ..++.|+.|+++.|.++++
T Consensus 211 ~k~V~~~~~~fPsl~~L~L~~--N~~~~~--~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si 286 (505)
T KOG3207|consen 211 WKDVQWILLTFPSLEVLYLEA--NEIILI--KATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASI 286 (505)
T ss_pred HHHHHHHHHhCCcHHHhhhhc--ccccce--ecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchh
Confidence 333444556666677666666 221110 0111112223666666633333322 5566666666666654444
Q ss_pred ccccc-CCCcccCCCccceEeeeCCCCCccCCcCC---CCCCCCEEEEec
Q 044279 151 NIYFG-DQGRTYCFRNLRHLSVKDCHFMTDLKWIR---CAPNLQFLYVSD 196 (305)
Q Consensus 151 ~~~~~-~~~~~~~~~~L~~L~L~~~~~l~~~~~~~---~~~~L~~L~l~~ 196 (305)
..... .......+++|++|++..| .+.+++.+. .+++|+.|.+..
T Consensus 287 ~~~d~~s~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 287 AEPDVESLDKTHTFPKLEYLNISEN-NIRDWRSLNHLRTLENLKHLRITL 335 (505)
T ss_pred cCCCccchhhhcccccceeeecccC-ccccccccchhhccchhhhhhccc
Confidence 31110 0000234566666666666 444444333 334555555444
No 31
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.90 E-value=9.1e-11 Score=101.13 Aligned_cols=237 Identities=19% Similarity=0.180 Sum_probs=161.1
Q ss_pred CCcccEEeCCCCCCcccc--chhhhcccccccccccCC-ccc--cCCcccccccccceeeccccceeeceEEEeeccccc
Q 044279 1 MHALAVLDLSYNFDLVEL--PEAIGKLINLCHLNLSNT-KIR--ELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCC 75 (305)
Q Consensus 1 l~~L~~L~l~~~~~~~~l--p~~~~~l~~L~~L~l~~~-~l~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~ 75 (305)
|++|++|++..|..++.. -.....+++|.+|+++-| .+. .+.....++++++.+.+.+|.-..
T Consensus 189 C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~------------ 256 (483)
T KOG4341|consen 189 CRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELE------------ 256 (483)
T ss_pred cchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhccccccc------------
Confidence 678999999998677754 334688999999999998 554 454446677889999888875322
Q ss_pred cccccccccCccCccceeEEEeecCcccccccccCCCccccceEEEEE-cCCCcccc-----ccCCCccEEEEecee-cc
Q 044279 76 ATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVA-SPWFSSLD-----FRMDHLETLEIVDCS-LE 148 (305)
Q Consensus 76 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~-~~~~~~~~-----~~~~~L~~L~l~~~~-l~ 148 (305)
.+.+...-+.+.-+..+++.. .......++......+..|+.++.+ +..+++.. .+.++|+.+.+..|. ++
T Consensus 257 le~l~~~~~~~~~i~~lnl~~--c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fs 334 (483)
T KOG4341|consen 257 LEALLKAAAYCLEILKLNLQH--CNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFS 334 (483)
T ss_pred HHHHHHHhccChHhhccchhh--hccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhh
Confidence 122222223333344444434 2333344445555566678999998 77777766 788999999999998 77
Q ss_pred eecccccCCCcccCCCccceEeeeCCCCCccC---CcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCcc
Q 044279 149 SINIYFGDQGRTYCFRNLRHLSVKDCHFMTDL---KWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNL 225 (305)
Q Consensus 149 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 225 (305)
+...... .++.+.|+.+++..|..+.+- +...+++.|+.+.+++|..+.+...... ......+..|
T Consensus 335 d~~ft~l----~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l-------~~~~c~~~~l 403 (483)
T KOG4341|consen 335 DRGFTML----GRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHL-------SSSSCSLEGL 403 (483)
T ss_pred hhhhhhh----hcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhh-------hhcccccccc
Confidence 7765554 378899999999998655543 3345789999999999887755421110 1233467788
Q ss_pred ceeeccCcccCceec-CCCCCCCCCceEEeeCCCCCCC
Q 044279 226 MVIDLQHLPSLTSIC-CRAVPLPSLKTISVYDCPGLRK 262 (305)
Q Consensus 226 ~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~c~~l~~ 262 (305)
+.+++++|+.+++-. .....++.|+.+++.+|..+.+
T Consensus 404 ~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 404 EVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTK 441 (483)
T ss_pred ceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhh
Confidence 999999998876432 2234678899999888876654
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.86 E-value=1.9e-09 Score=97.10 Aligned_cols=170 Identities=25% Similarity=0.343 Sum_probs=105.5
Q ss_pred cccEEeCCCCCCccccchhhhccc-ccccccccCCccccCCcccccccccceeeccccceeeceEEEeeccccccccccc
Q 044279 3 ALAVLDLSYNFDLVELPEAIGKLI-NLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLA 81 (305)
Q Consensus 3 ~L~~L~l~~~~~~~~lp~~~~~l~-~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~ 81 (305)
.+..|++.++ .+.++|.....+. +|+.|+++++++..+|..++.+++|+.|+++.|++ ..++.
T Consensus 117 ~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l---------------~~l~~ 180 (394)
T COG4886 117 NLTSLDLDNN-NITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDL---------------SDLPK 180 (394)
T ss_pred ceeEEecCCc-ccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchh---------------hhhhh
Confidence 4667777777 7777777777764 77888887777777776777777888888877763 34444
Q ss_pred cccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCC-Ccccc--ccCCCccEEEEeceecceecccccCCC
Q 044279 82 GLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPW-FSSLD--FRMDHLETLEIVDCSLESINIYFGDQG 158 (305)
Q Consensus 82 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~ 158 (305)
....++.|+.|++++ +....++... .....|+++.++.+. +.... ..+.++..+.+.++.+...+...
T Consensus 181 ~~~~~~~L~~L~ls~--N~i~~l~~~~---~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~---- 251 (394)
T COG4886 181 LLSNLSNLNNLDLSG--NKISDLPPEI---ELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESI---- 251 (394)
T ss_pred hhhhhhhhhheeccC--CccccCchhh---hhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchh----
Confidence 444667777777776 3333333321 122236666666442 22222 55556666666666554432222
Q ss_pred cccCCCccceEeeeCCCCCccCCcCCCCCCCCEEEEeccccc
Q 044279 159 RTYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVL 200 (305)
Q Consensus 159 ~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~ 200 (305)
..++++++|++++| .+++++.+....++++|+++++...
T Consensus 252 --~~l~~l~~L~~s~n-~i~~i~~~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 252 --GNLSNLETLDLSNN-QISSISSLGSLTNLRELDLSGNSLS 290 (394)
T ss_pred --ccccccceeccccc-cccccccccccCccCEEeccCcccc
Confidence 45666777777777 6666666666777777777775543
No 33
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.82 E-value=2.2e-10 Score=102.39 Aligned_cols=163 Identities=23% Similarity=0.217 Sum_probs=98.3
Q ss_pred EEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeeccccccccccccccC
Q 044279 6 VLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLES 85 (305)
Q Consensus 6 ~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ 85 (305)
..|++.| .+.++|..++.+..|..+.++.|.+..+|..+..+..|.+++++.|++ ..++..+..
T Consensus 79 ~aDlsrN-R~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nql---------------S~lp~~lC~ 142 (722)
T KOG0532|consen 79 FADLSRN-RFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQL---------------SHLPDGLCD 142 (722)
T ss_pred hhhcccc-ccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchh---------------hcCChhhhc
Confidence 4677888 788888888888888888888888888888888899999999988884 344555555
Q ss_pred ccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc---ccCCCccEEEEeceecceecccccCCCcccC
Q 044279 86 LENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD---FRMDHLETLEIVDCSLESINIYFGDQGRTYC 162 (305)
Q Consensus 86 l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~ 162 (305)
++ |+.|-+.. +.....+.-. .....|..|+.++|.+..++ ..+..|+.|.+..|.+.+++.+. .
T Consensus 143 lp-Lkvli~sN--Nkl~~lp~~i---g~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El------~- 209 (722)
T KOG0532|consen 143 LP-LKVLIVSN--NKLTSLPEEI---GLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEEL------C- 209 (722)
T ss_pred Cc-ceeEEEec--CccccCCccc---ccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHH------h-
Confidence 55 55555554 2222222111 11222555555555554444 44455555555555555555443 2
Q ss_pred CCccceEeeeCCCCCccCC-cCCCCCCCCEEEEeccc
Q 044279 163 FRNLRHLSVKDCHFMTDLK-WIRCAPNLQFLYVSDCQ 198 (305)
Q Consensus 163 ~~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~l~~~~ 198 (305)
.-.|.+||+++| ++..+| .|.+|.+|++|-|.+|.
T Consensus 210 ~LpLi~lDfScN-kis~iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 210 SLPLIRLDFSCN-KISYLPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred CCceeeeecccC-ceeecchhhhhhhhheeeeeccCC
Confidence 223555555555 555544 35555555555555543
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.80 E-value=6.2e-10 Score=87.56 Aligned_cols=130 Identities=19% Similarity=0.255 Sum_probs=39.6
Q ss_pred hcccccccccccCCccccCCcccc-cccccceeeccccceeeceEEEeeccccccccccccccCccCccceeEEEeecCc
Q 044279 23 GKLINLCHLNLSNTKIRELPAGIK-YLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDT 101 (305)
Q Consensus 23 ~~l~~L~~L~l~~~~l~~lp~~~~-~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 101 (305)
-+..++++|+++++.+..+. .++ .+.+|+.|++++|.+. ....+..+++|+.|.++. +..
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~----------------~l~~l~~L~~L~~L~L~~--N~I 76 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQIT----------------KLEGLPGLPRLKTLDLSN--NRI 76 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S------------------TT----TT--EEE--S--S--
T ss_pred cccccccccccccccccccc-chhhhhcCCCEEECCCCCCc----------------cccCccChhhhhhcccCC--CCC
Confidence 44456777777777777663 455 4677777777777642 234566677777777766 332
Q ss_pred ccccc-cccCCCccccceEEEEEcCCCccccccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccC
Q 044279 102 HAFCR-FQSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDL 180 (305)
Q Consensus 102 ~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~ 180 (305)
..+.. +. ..+++|++|++++|.+.++..-.. ...+++|+.|++.+|+-...-
T Consensus 77 ~~i~~~l~-----------------------~~lp~L~~L~L~~N~I~~l~~l~~----L~~l~~L~~L~L~~NPv~~~~ 129 (175)
T PF14580_consen 77 SSISEGLD-----------------------KNLPNLQELYLSNNKISDLNELEP----LSSLPKLRVLSLEGNPVCEKK 129 (175)
T ss_dssp -S-CHHHH-----------------------HH-TT--EEE-TTS---SCCCCGG----GGG-TT--EEE-TT-GGGGST
T ss_pred CccccchH-----------------------HhCCcCCEEECcCCcCCChHHhHH----HHcCCCcceeeccCCcccchh
Confidence 22211 00 235667777777666555442111 256777777777777433221
Q ss_pred C----cCCCCCCCCEEEEeccc
Q 044279 181 K----WIRCAPNLQFLYVSDCQ 198 (305)
Q Consensus 181 ~----~~~~~~~L~~L~l~~~~ 198 (305)
. .+..+|+|+.||-....
T Consensus 130 ~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 130 NYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp THHHHHHHH-TT-SEETTEETT
T ss_pred hHHHHHHHHcChhheeCCEEcc
Confidence 1 23456777777665544
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.77 E-value=7.5e-09 Score=93.27 Aligned_cols=172 Identities=24% Similarity=0.334 Sum_probs=85.1
Q ss_pred hhcccccccccccCCccccCCccccccc-ccceeeccccceeeceEEEeeccccccccccccccCccCccceeEEEeecC
Q 044279 22 IGKLINLCHLNLSNTKIRELPAGIKYLK-NLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVD 100 (305)
Q Consensus 22 ~~~l~~L~~L~l~~~~l~~lp~~~~~l~-~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 100 (305)
+..+..+..|++.++++..+|.....+. +|+.|+++++.+ ..++..+..+++|+.|++..
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i---------------~~l~~~~~~l~~L~~L~l~~---- 172 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKI---------------ESLPSPLRNLPNLKNLDLSF---- 172 (394)
T ss_pred hhcccceeEEecCCcccccCccccccchhhcccccccccch---------------hhhhhhhhccccccccccCC----
Confidence 3444556666666666666665555553 666666666652 23334555566666655555
Q ss_pred cccccccccCCCccccceEEEEEcCCCcccc--c-cCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCC
Q 044279 101 THAFCRFQSSPKLQSCVKRLTVASPWFSSLD--F-RMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFM 177 (305)
Q Consensus 101 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~--~-~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l 177 (305)
+.+.+++ . ..+.|+.|+++++.++.++... .....|++|.+++|..+
T Consensus 173 ------------------------N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~------~~~~~L~~l~~~~N~~~ 222 (394)
T COG4886 173 ------------------------NDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEI------ELLSALEELDLSNNSII 222 (394)
T ss_pred ------------------------chhhhhhhhhhhhhhhhheeccCCccccCchhh------hhhhhhhhhhhcCCcce
Confidence 3333333 1 4455555555555555555321 12333555555555333
Q ss_pred ccCCcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCceecCCCCCCCCCceEEeeCC
Q 044279 178 TDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDC 257 (305)
Q Consensus 178 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c 257 (305)
..+..+..+.++..+.+.++.. ..++ ...+.+++++.|+++++ .++.++. .+...+++.|++++.
T Consensus 223 ~~~~~~~~~~~l~~l~l~~n~~-~~~~------------~~~~~l~~l~~L~~s~n-~i~~i~~-~~~~~~l~~L~~s~n 287 (394)
T COG4886 223 ELLSSLSNLKNLSGLELSNNKL-EDLP------------ESIGNLSNLETLDLSNN-QISSISS-LGSLTNLRELDLSGN 287 (394)
T ss_pred ecchhhhhcccccccccCCcee-eecc------------chhccccccceeccccc-ccccccc-ccccCccCEEeccCc
Confidence 3333344445555554444332 1111 13344555555555555 4554444 444555555555543
No 36
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.77 E-value=6.4e-10 Score=99.47 Aligned_cols=146 Identities=27% Similarity=0.333 Sum_probs=115.2
Q ss_pred CcccEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeeccccccccccc
Q 044279 2 HALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLA 81 (305)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~ 81 (305)
..|.+|+++.| .+..+|..++.|+ |+.|-+++|+++.+|.+++....|..|+.+.|. ...++.
T Consensus 121 ~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~ne---------------i~slps 183 (722)
T KOG0532|consen 121 EALTFLDLSSN-QLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNE---------------IQSLPS 183 (722)
T ss_pred hHHHHhhhccc-hhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhh---------------hhhchH
Confidence 35677888888 8888888888876 888888888999999999988899999999887 567888
Q ss_pred cccCccCccceeEEEeecCcccccc-cccCCCccccceEEEEEcCCCcccc---ccCCCccEEEEeceecceecccccCC
Q 044279 82 GLESLENIHDISITLCFVDTHAFCR-FQSSPKLQSCVKRLTVASPWFSSLD---FRMDHLETLEIVDCSLESINIYFGDQ 157 (305)
Q Consensus 82 ~l~~l~~L~~L~l~~~~~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~L~~L~l~~~~l~~~~~~~~~~ 157 (305)
.+..+.+|+.|.+.. +....++. +. ... |.+|+++||.+..+| ..+.+|++|.|.+|++++.|..+-..
T Consensus 184 ql~~l~slr~l~vrR--n~l~~lp~El~-~Lp----Li~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~k 256 (722)
T KOG0532|consen 184 QLGYLTSLRDLNVRR--NHLEDLPEELC-SLP----LIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEK 256 (722)
T ss_pred HhhhHHHHHHHHHhh--hhhhhCCHHHh-CCc----eeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHHHhc
Confidence 999999999998888 44444433 33 333 888999999999888 88899999999998888888766432
Q ss_pred CcccCCCccceEeeeCC
Q 044279 158 GRTYCFRNLRHLSVKDC 174 (305)
Q Consensus 158 ~~~~~~~~L~~L~L~~~ 174 (305)
+...-.++|+..-|
T Consensus 257 ---GkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 257 ---GKVHIFKYLSTQAC 270 (722)
T ss_pred ---cceeeeeeecchhc
Confidence 34455677777766
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.76 E-value=2.3e-09 Score=84.34 Aligned_cols=77 Identities=21% Similarity=0.313 Sum_probs=23.5
Q ss_pred ceEEEEEcCCCcccc--ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCC---cCCCCCCCCE
Q 044279 117 VKRLTVASPWFSSLD--FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK---WIRCAPNLQF 191 (305)
Q Consensus 117 L~~L~l~~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~---~~~~~~~L~~ 191 (305)
|+.|+++.|.+..+. ..+++|+.|++++|.+++++..+. ..+++|+.|++++| .+.++. .+..+|+|+.
T Consensus 44 L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~-----~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~ 117 (175)
T PF14580_consen 44 LEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLD-----KNLPNLQELYLSNN-KISDLNELEPLSSLPKLRV 117 (175)
T ss_dssp --EEE-TTS--S--TT----TT--EEE--SS---S-CHHHH-----HH-TT--EEE-TTS----SCCCCGGGGG-TT--E
T ss_pred CCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchH-----HhCCcCCEEECcCC-cCCChHHhHHHHcCCCcce
Confidence 333444433333333 445566666666666555542221 24566666666666 444432 3445566666
Q ss_pred EEEecccc
Q 044279 192 LYVSDCQV 199 (305)
Q Consensus 192 L~l~~~~~ 199 (305)
|++.+|+.
T Consensus 118 L~L~~NPv 125 (175)
T PF14580_consen 118 LSLEGNPV 125 (175)
T ss_dssp EE-TT-GG
T ss_pred eeccCCcc
Confidence 66666554
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.74 E-value=6e-09 Score=67.51 Aligned_cols=58 Identities=38% Similarity=0.540 Sum_probs=52.7
Q ss_pred CcccEEeCCCCCCccccch-hhhcccccccccccCCccccCCcc-cccccccceeeccccc
Q 044279 2 HALAVLDLSYNFDLVELPE-AIGKLINLCHLNLSNTKIRELPAG-IKYLKNLKILRLDVFS 60 (305)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~ 60 (305)
|+|++|++++| .+..+|. .+.++++|++|++++|++..++.. +.++++|++|++++|+
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 68999999999 9999985 589999999999999999988764 8999999999999986
No 39
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.58 E-value=3.8e-09 Score=87.80 Aligned_cols=129 Identities=16% Similarity=0.157 Sum_probs=86.7
Q ss_pred hhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeeccccccccccccccCccCccceeEEEeecCc
Q 044279 22 IGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDT 101 (305)
Q Consensus 22 ~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 101 (305)
+.-.+.|..+|+++|.++.+-..++-.+.++.|+++.|.+. .+..++.+.+|+.|++++ +..
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~----------------~v~nLa~L~~L~~LDLS~--N~L 341 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIR----------------TVQNLAELPQLQLLDLSG--NLL 341 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEecccccee----------------eehhhhhcccceEeeccc--chh
Confidence 44556677777777777776666677777777777777643 233466677777777777 555
Q ss_pred ccccccccCCCccccceEEEEEcCCCcccc--ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCC
Q 044279 102 HAFCRFQSSPKLQSCVKRLTVASPWFSSLD--FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCH 175 (305)
Q Consensus 102 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 175 (305)
..+..|..- ..++++|.++.|.++++. ..+=+|..|++++|+++..+.--. .+++|.|+++.|.+|+
T Consensus 342 s~~~Gwh~K---LGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~----IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 342 AECVGWHLK---LGNIKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNH----IGNLPCLETLRLTGNP 410 (490)
T ss_pred HhhhhhHhh---hcCEeeeehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcc----cccccHHHHHhhcCCC
Confidence 555554432 234777777777676666 556678888888888766653221 3678889999888884
No 40
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.52 E-value=4.1e-09 Score=89.10 Aligned_cols=236 Identities=17% Similarity=0.189 Sum_probs=142.3
Q ss_pred CcccEEeCCCCCCcc-----ccchhhhcccccccccccCC---ccc-cCCcc-------cccccccceeeccccceeece
Q 044279 2 HALAVLDLSYNFDLV-----ELPEAIGKLINLCHLNLSNT---KIR-ELPAG-------IKYLKNLKILRLDVFSWFSTE 65 (305)
Q Consensus 2 ~~L~~L~l~~~~~~~-----~lp~~~~~l~~L~~L~l~~~---~l~-~lp~~-------~~~l~~L~~L~l~~~~~~~~~ 65 (305)
..+..|++++| .++ .+.+.+.+.+.|+..+++.- +.+ .+|.. +-.++.|++|+|+.|-+-.
T Consensus 30 ~s~~~l~lsgn-t~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~-- 106 (382)
T KOG1909|consen 30 DSLTKLDLSGN-TFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP-- 106 (382)
T ss_pred CceEEEeccCC-chhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc--
Confidence 35678888888 665 23444666677777777663 222 34432 3345688888888885411
Q ss_pred EEEeeccccccccccccccCccCccceeEEEeecCcccccc---------cccCCCccccceEEEEEcCCCcccc-----
Q 044279 66 LVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCR---------FQSSPKLQSCVKRLTVASPWFSSLD----- 131 (305)
Q Consensus 66 ~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~---------l~~~~~~~~~L~~L~l~~~~~~~~~----- 131 (305)
+....+..-+.++..|++|.+..|......-.. .........+|+.+...-|.+.+.+
T Consensus 107 --------~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A 178 (382)
T KOG1909|consen 107 --------KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALA 178 (382)
T ss_pred --------cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHH
Confidence 112223334566778888888763221111111 1112223345888888866666554
Q ss_pred ---ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccC-----CcCCCCCCCCEEEEecccccccc
Q 044279 132 ---FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDL-----KWIRCAPNLQFLYVSDCQVLSEI 203 (305)
Q Consensus 132 ---~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~-----~~~~~~~~L~~L~l~~~~~~~~~ 203 (305)
+..+.|+.+.+..|.+..-+......+ +..+++|+.|||.+|.....- ..+..+++|+.|++++|..-..-
T Consensus 179 ~~~~~~~~leevr~~qN~I~~eG~~al~ea-l~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~G 257 (382)
T KOG1909|consen 179 EAFQSHPTLEEVRLSQNGIRPEGVTALAEA-LEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEG 257 (382)
T ss_pred HHHHhccccceEEEecccccCchhHHHHHH-HHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccccccc
Confidence 666889999999988554444221111 367899999999999432221 14567889999999998853321
Q ss_pred cc-ccCCCCCccccccccccCccceeeccCcccCce-----ecCCCCCCCCCceEEeeCCC
Q 044279 204 IG-TYESPGTSEIEESHHFLSNLMVIDLQHLPSLTS-----ICCRAVPLPSLKTISVYDCP 258 (305)
Q Consensus 204 ~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-----~~~~~~~~~~L~~L~l~~c~ 258 (305)
.. ... ..-...|+|+.|.+.+| .++. +.......|.|+.|++++|.
T Consensus 258 a~a~~~--------al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 258 AIAFVD--------ALKESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HHHHHH--------HHhccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 11 000 12235899999999998 5542 11123358999999999884
No 41
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.48 E-value=9.8e-09 Score=86.89 Aligned_cols=212 Identities=16% Similarity=0.147 Sum_probs=131.0
Q ss_pred CcccEEeCCCCC--C-ccccchh-------hhcccccccccccCCccc--cC---CcccccccccceeeccccceeeceE
Q 044279 2 HALAVLDLSYNF--D-LVELPEA-------IGKLINLCHLNLSNTKIR--EL---PAGIKYLKNLKILRLDVFSWFSTEL 66 (305)
Q Consensus 2 ~~L~~L~l~~~~--~-~~~lp~~-------~~~l~~L~~L~l~~~~l~--~l---p~~~~~l~~L~~L~l~~~~~~~~~~ 66 (305)
++|+..+++.-+ + ..++|+. +-.+++|++++||.|.+. .+ -.-++++..|++|.+.+|-+-..
T Consensus 58 ~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~-- 135 (382)
T KOG1909|consen 58 KELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPE-- 135 (382)
T ss_pred ccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChh--
Confidence 456677776642 1 1245543 345568999999998664 22 23367788999999998864221
Q ss_pred EEeecccccccc---------ccccccCccCccceeEEEeecCcccc--cccccCCCccccceEEEEEcCCCcccc----
Q 044279 67 VALHHNFCCATT---------VLAGLESLENIHDISITLCFVDTHAF--CRFQSSPKLQSCVKRLTVASPWFSSLD---- 131 (305)
Q Consensus 67 ~l~~~~~~~~~~---------~~~~l~~l~~L~~L~l~~~~~~~~~~--~~l~~~~~~~~~L~~L~l~~~~~~~~~---- 131 (305)
.... ...-.+.-+.|+.+.... +..... ..+...-+..+.|+.+.+..|++..-.
T Consensus 136 --------ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r--Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al 205 (382)
T KOG1909|consen 136 --------AGGRLGRALFELAVNKKAASKPKLRVFICGR--NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTAL 205 (382)
T ss_pred --------HHHHHHHHHHHHHHHhccCCCcceEEEEeec--cccccccHHHHHHHHHhccccceEEEecccccCchhHHH
Confidence 0011 223455667788888777 433322 223333333355888888865543222
Q ss_pred ----ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCC-------cCCCCCCCCEEEEeccccc
Q 044279 132 ----FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK-------WIRCAPNLQFLYVSDCQVL 200 (305)
Q Consensus 132 ----~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~-------~~~~~~~L~~L~l~~~~~~ 200 (305)
..+++|+.|++.+|-++.-+....... ...+++|+.|++++| .+++-. .-...|+|+.|.+.+|.+.
T Consensus 206 ~eal~~~~~LevLdl~DNtft~egs~~Laka-L~s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 206 AEALEHCPHLEVLDLRDNTFTLEGSVALAKA-LSSWPHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred HHHHHhCCcceeeecccchhhhHHHHHHHHH-hcccchheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence 889999999999997544332211100 256788999999999 665531 1225799999999998765
Q ss_pred cccccccCCCCCccccccccccCccceeeccCcccC
Q 044279 201 SEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSL 236 (305)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 236 (305)
.+-.... .......|.|+.|+|++| .+
T Consensus 284 ~da~~~l--------a~~~~ek~dL~kLnLngN-~l 310 (382)
T KOG1909|consen 284 RDAALAL--------AACMAEKPDLEKLNLNGN-RL 310 (382)
T ss_pred HHHHHHH--------HHHHhcchhhHHhcCCcc-cc
Confidence 4322111 124456899999999999 44
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.37 E-value=4.8e-07 Score=58.47 Aligned_cols=57 Identities=25% Similarity=0.309 Sum_probs=31.7
Q ss_pred CccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCC--cCCCCCCCCEEEEeccc
Q 044279 136 HLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK--WIRCAPNLQFLYVSDCQ 198 (305)
Q Consensus 136 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~ 198 (305)
+|+.|++++|.++.++...+ ..+++|++|++++| .++.++ .+..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f-----~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSF-----SNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTT-----TTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHH-----cCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45666666665555554442 45566666666655 444442 34555666666665543
No 43
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.27 E-value=5.8e-07 Score=53.62 Aligned_cols=40 Identities=43% Similarity=0.621 Sum_probs=30.1
Q ss_pred CcccEEeCCCCCCccccchhhhcccccccccccCCccccCC
Q 044279 2 HALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELP 42 (305)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp 42 (305)
++|++|++++| .++++|..+++|++|++|++++|+++.++
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 57888888888 78888777888888888888888777654
No 44
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.13 E-value=6.9e-07 Score=74.49 Aligned_cols=184 Identities=16% Similarity=0.125 Sum_probs=97.5
Q ss_pred cccccceeeccccceeeceEEEeeccccccccccccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCC
Q 044279 47 YLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPW 126 (305)
Q Consensus 47 ~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 126 (305)
.++.++++++.+|.+++ +..+...+.+++.|+.|.++. +...+. +.+..-...+|++|.+....
T Consensus 69 ~~~~v~elDL~~N~iSd------------WseI~~ile~lP~l~~LNls~--N~L~s~--I~~lp~p~~nl~~lVLNgT~ 132 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISD------------WSEIGAILEQLPALTTLNLSC--NSLSSD--IKSLPLPLKNLRVLVLNGTG 132 (418)
T ss_pred Hhhhhhhhhcccchhcc------------HHHHHHHHhcCccceEeeccC--CcCCCc--cccCcccccceEEEEEcCCC
Confidence 46678888888888765 666777778888888888877 433221 22222222347777777332
Q ss_pred C--cccc---ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCC----cCCCCCCCCEEEEecc
Q 044279 127 F--SSLD---FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK----WIRCAPNLQFLYVSDC 197 (305)
Q Consensus 127 ~--~~~~---~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~----~~~~~~~L~~L~l~~~ 197 (305)
+ .... ..+|.+++|.++.|+++.+..+-.-. -.--+.+++|++..|.. ..+. .-.-||++..+.+..|
T Consensus 133 L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~--e~~s~~v~tlh~~~c~~-~~w~~~~~l~r~Fpnv~sv~v~e~ 209 (418)
T KOG2982|consen 133 LSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCI--EDWSTEVLTLHQLPCLE-QLWLNKNKLSRIFPNVNSVFVCEG 209 (418)
T ss_pred CChhhhhhhhhcchhhhhhhhccchhhhhccccccc--cccchhhhhhhcCCcHH-HHHHHHHhHHhhcccchheeeecC
Confidence 2 2222 67777888888887533332211000 01124566666666621 1111 1224677777777776
Q ss_pred ccccccccccCCCCCccccccccccCccceeeccCcccCceecCC--CCCCCCCceEEeeCCCCCC
Q 044279 198 QVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICCR--AVPLPSLKTISVYDCPGLR 261 (305)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~~L~~L~l~~c~~l~ 261 (305)
..-. .+.+.....+|.+..|++..+ ++.+|... ...|++|..|++...|.+.
T Consensus 210 PlK~-----------~s~ek~se~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 210 PLKT-----------ESSEKGSEPFPSLSCLNLGAN-NIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred cccc-----------hhhcccCCCCCcchhhhhccc-ccccHHHHHHHcCCchhheeeccCCcccc
Confidence 5321 111233444555555555554 44433221 2245556666555555444
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.09 E-value=8.6e-07 Score=80.41 Aligned_cols=77 Identities=32% Similarity=0.423 Sum_probs=54.5
Q ss_pred CcccEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeeccccccccccc
Q 044279 2 HALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLA 81 (305)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~ 81 (305)
++|.+|++.+| .+..+...+..+.+|++|++++|.+..+ .++..+..|+.|++.+|.+. .+.
T Consensus 95 ~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N~i~----------------~~~ 156 (414)
T KOG0531|consen 95 KSLEALDLYDN-KIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGNLIS----------------DIS 156 (414)
T ss_pred cceeeeecccc-chhhcccchhhhhcchheeccccccccc-cchhhccchhhheeccCcch----------------hcc
Confidence 56777888888 7777765567788888888888888777 35677777888888888653 234
Q ss_pred cccCccCccceeEEE
Q 044279 82 GLESLENIHDISITL 96 (305)
Q Consensus 82 ~l~~l~~L~~L~l~~ 96 (305)
.+..+..|+.+++.+
T Consensus 157 ~~~~l~~L~~l~l~~ 171 (414)
T KOG0531|consen 157 GLESLKSLKLLDLSY 171 (414)
T ss_pred CCccchhhhcccCCc
Confidence 444466777777766
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.96 E-value=2.5e-06 Score=71.28 Aligned_cols=185 Identities=16% Similarity=0.131 Sum_probs=87.8
Q ss_pred hcccccccccccCCccccC---CcccccccccceeeccccceeeceEEEeeccccccccccccc-cCccCccceeEEEee
Q 044279 23 GKLINLCHLNLSNTKIREL---PAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGL-ESLENIHDISITLCF 98 (305)
Q Consensus 23 ~~l~~L~~L~l~~~~l~~l---p~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~ 98 (305)
..+.+++.+|+..|.++.. ..-..+|+.|++|+++.|+. ...+..+ ....+|+.+.+.+
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L---------------~s~I~~lp~p~~nl~~lVLNg-- 130 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSL---------------SSDIKSLPLPLKNLRVLVLNG-- 130 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcC---------------CCccccCcccccceEEEEEcC--
Confidence 4556666777766666532 22245666777777766653 2223333 3455666665554
Q ss_pred cCcccccccccCCCccccceEEEEEcCCCcccc-------ccCCCccEEEEeceecc-eecccccCCCcccCCCccceEe
Q 044279 99 VDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD-------FRMDHLETLEIVDCSLE-SINIYFGDQGRTYCFRNLRHLS 170 (305)
Q Consensus 99 ~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~-------~~~~~L~~L~l~~~~l~-~~~~~~~~~~~~~~~~~L~~L~ 170 (305)
+.-......+.....+.++.|+++.|.+..+. ..-+.+.++.+..|... .....-. .+-+|++..+.
T Consensus 131 -T~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l----~r~Fpnv~sv~ 205 (418)
T KOG2982|consen 131 -TGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKL----SRIFPNVNSVF 205 (418)
T ss_pred -CCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhH----Hhhcccchhee
Confidence 22222222232233333555555533221111 11223445555555411 1100000 14466666666
Q ss_pred eeCCCCCccCC---cCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCceecC
Q 044279 171 VKDCHFMTDLK---WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICC 241 (305)
Q Consensus 171 L~~~~~l~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 241 (305)
+..| -+++.+ ....+|.+-.|.++.++. +++...+.+..|++|..|.+..+|-...+..
T Consensus 206 v~e~-PlK~~s~ek~se~~p~~~~LnL~~~~i-----------dswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~ 267 (418)
T KOG2982|consen 206 VCEG-PLKTESSEKGSEPFPSLSCLNLGANNI-----------DSWASVDALNGFPQLVDLRVSENPLSDPLRG 267 (418)
T ss_pred eecC-cccchhhcccCCCCCcchhhhhccccc-----------ccHHHHHHHcCCchhheeeccCCcccccccC
Confidence 6666 333332 233455555666666443 2222334566677777777776666555544
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.94 E-value=9.6e-07 Score=80.10 Aligned_cols=124 Identities=19% Similarity=0.167 Sum_probs=58.4
Q ss_pred ccccccccccCCccccCCcccccccccceeeccccceeeceEEEeeccccccccccccccCccCccceeEEEeecCcccc
Q 044279 25 LINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAF 104 (305)
Q Consensus 25 l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 104 (305)
+..+..+.++.+.+...-..+..+++|..+++.++.+. .+...+..+++|+.|+++. +....+
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~---------------~i~~~l~~~~~L~~L~ls~--N~I~~i 133 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIE---------------KIENLLSSLVNLQVLDLSF--NKITKL 133 (414)
T ss_pred hHhHHhhccchhhhhhhhcccccccceeeeeccccchh---------------hcccchhhhhcchheeccc--cccccc
Confidence 34444444555444443233455555566666555432 1112255555555555555 333333
Q ss_pred cccccCCCccccceEEEEEcCCCcccc--ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCC
Q 044279 105 CRFQSSPKLQSCVKRLTVASPWFSSLD--FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDC 174 (305)
Q Consensus 105 ~~l~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~ 174 (305)
..+..+.. |+.|++..|.+..+. ..+..|+.+++++|.+..+..... ..+.+++.+.+.+|
T Consensus 134 ~~l~~l~~----L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~-----~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 134 EGLSTLTL----LKELNLSGNLISDISGLESLKSLKLLDLSYNRIVDIENDEL-----SELISLEELDLGGN 196 (414)
T ss_pred cchhhccc----hhhheeccCcchhccCCccchhhhcccCCcchhhhhhhhhh-----hhccchHHHhccCC
Confidence 33333322 555555555554444 335555566665555444432100 23455555555555
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.94 E-value=8.4e-08 Score=88.58 Aligned_cols=72 Identities=14% Similarity=0.212 Sum_probs=37.3
Q ss_pred ceEEEEEcCCCcccc---ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCCcCC--CCCCCCE
Q 044279 117 VKRLTVASPWFSSLD---FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLKWIR--CAPNLQF 191 (305)
Q Consensus 117 L~~L~l~~~~~~~~~---~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~--~~~~L~~ 191 (305)
|.+.+++||.+..+. .-++.|+.|++++|.++... . ...++.|++|||++| .+..+|-+. .|. |..
T Consensus 166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~-----Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~-L~~ 236 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--N-----LRRLPKLKHLDLSYN-CLRHVPQLSMVGCK-LQL 236 (1096)
T ss_pred HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--H-----HHhcccccccccccc-hhccccccchhhhh-hee
Confidence 444555555554444 44556666666666554444 1 134566666666665 555554332 222 555
Q ss_pred EEEecc
Q 044279 192 LYVSDC 197 (305)
Q Consensus 192 L~l~~~ 197 (305)
|.+.+|
T Consensus 237 L~lrnN 242 (1096)
T KOG1859|consen 237 LNLRNN 242 (1096)
T ss_pred eeeccc
Confidence 666553
No 49
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.93 E-value=3.1e-06 Score=80.69 Aligned_cols=82 Identities=26% Similarity=0.312 Sum_probs=45.8
Q ss_pred CCcccEEeCCCCCCc-cccchhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeeccccccccc
Q 044279 1 MHALAVLDLSYNFDL-VELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTV 79 (305)
Q Consensus 1 l~~L~~L~l~~~~~~-~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~ 79 (305)
+|.|+.|.+++-... +++.....++++|..||+|+++++.+ .+++++++|+.|.+.+-.+. ....
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e-------------~~~~ 212 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFE-------------SYQD 212 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCC-------------chhh
Confidence 345555555553111 12223345666666666666666666 56666666666666665433 2344
Q ss_pred cccccCccCccceeEEE
Q 044279 80 LAGLESLENIHDISITL 96 (305)
Q Consensus 80 ~~~l~~l~~L~~L~l~~ 96 (305)
...+.++++|+.|+++.
T Consensus 213 l~~LF~L~~L~vLDIS~ 229 (699)
T KOG3665|consen 213 LIDLFNLKKLRVLDISR 229 (699)
T ss_pred HHHHhcccCCCeeeccc
Confidence 45566666666666665
No 50
>PLN03150 hypothetical protein; Provisional
Probab=97.90 E-value=1.1e-05 Score=76.71 Aligned_cols=79 Identities=25% Similarity=0.399 Sum_probs=63.0
Q ss_pred ccEEeCCCCCCcc-ccchhhhcccccccccccCCccc-cCCcccccccccceeeccccceeeceEEEeeccccccccccc
Q 044279 4 LAVLDLSYNFDLV-ELPEAIGKLINLCHLNLSNTKIR-ELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLA 81 (305)
Q Consensus 4 L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~ 81 (305)
++.|+|++| .+. .+|..++++++|+.|++++|++. .+|..++.+++|++|++++|.+ ...++.
T Consensus 420 v~~L~L~~n-~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~l--------------sg~iP~ 484 (623)
T PLN03150 420 IDGLGLDNQ-GLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF--------------NGSIPE 484 (623)
T ss_pred EEEEECCCC-CccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCC--------------CCCCch
Confidence 567888888 544 67888888888999999888886 7887888888899999888875 345677
Q ss_pred cccCccCccceeEEEe
Q 044279 82 GLESLENIHDISITLC 97 (305)
Q Consensus 82 ~l~~l~~L~~L~l~~~ 97 (305)
.+..+++|+.|++..|
T Consensus 485 ~l~~L~~L~~L~Ls~N 500 (623)
T PLN03150 485 SLGQLTSLRILNLNGN 500 (623)
T ss_pred HHhcCCCCCEEECcCC
Confidence 7888888888888773
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.79 E-value=1.2e-05 Score=47.97 Aligned_cols=37 Identities=38% Similarity=0.465 Sum_probs=31.9
Q ss_pred cccccccccCCccccCCcccccccccceeecccccee
Q 044279 26 INLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWF 62 (305)
Q Consensus 26 ~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~ 62 (305)
++|++|++++|+++.+|..+++|++|++|++++|++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 4799999999999999888999999999999999864
No 52
>PLN03150 hypothetical protein; Provisional
Probab=97.79 E-value=4e-05 Score=73.03 Aligned_cols=110 Identities=16% Similarity=0.153 Sum_probs=72.1
Q ss_pred ccEEEEeceecc-eecccccCCCcccCCCccceEeeeCCCCCccCC-cCCCCCCCCEEEEeccccccccccccCCCCCcc
Q 044279 137 LETLEIVDCSLE-SINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK-WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSE 214 (305)
Q Consensus 137 L~~L~l~~~~l~-~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 214 (305)
++.|+++++.+. .++..+ ..+++|+.|+|++|.....+| .+..+++|+.|++++|.....++.
T Consensus 420 v~~L~L~~n~L~g~ip~~i------~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~--------- 484 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDI------SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE--------- 484 (623)
T ss_pred EEEEECCCCCccccCCHHH------hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCch---------
Confidence 667777777754 333333 567888888888883333454 567788888888888765444444
Q ss_pred ccccccccCccceeeccCcccCceecCCCCC-CCCCceEEeeCCCCCCCCC
Q 044279 215 IEESHHFLSNLMVIDLQHLPSLTSICCRAVP-LPSLKTISVYDCPGLRKLP 264 (305)
Q Consensus 215 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~-~~~L~~L~l~~c~~l~~~~ 264 (305)
.++.+++|+.|++++|.--..+|..... ..++..+++.+++.+...|
T Consensus 485 ---~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 485 ---SLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred ---HHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 6778888888888888433455544332 3456677787776655443
No 53
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.67 E-value=7.9e-05 Score=59.01 Aligned_cols=77 Identities=18% Similarity=0.280 Sum_probs=44.4
Q ss_pred ceEEEEEcCCCcccc--ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCcc---CCcCCCCCCCCE
Q 044279 117 VKRLTVASPWFSSLD--FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTD---LKWIRCAPNLQF 191 (305)
Q Consensus 117 L~~L~l~~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~---~~~~~~~~~L~~ 191 (305)
...++++.|.+-..+ ..++.|..|.+..|+++++..... ..+++|+.|.|.+| .+.. +..+..||.|++
T Consensus 44 ~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~-----~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLD-----TFLPNLKTLILTNN-SIQELGDLDPLASCPKLEY 117 (233)
T ss_pred cceecccccchhhcccCCCccccceEEecCCcceeeccchh-----hhccccceEEecCc-chhhhhhcchhccCCccce
Confidence 344444434333333 556667777776666666665553 45666777777766 3333 334556677777
Q ss_pred EEEecccc
Q 044279 192 LYVSDCQV 199 (305)
Q Consensus 192 L~l~~~~~ 199 (305)
|.+-+|+.
T Consensus 118 Ltll~Npv 125 (233)
T KOG1644|consen 118 LTLLGNPV 125 (233)
T ss_pred eeecCCch
Confidence 76666553
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.60 E-value=0.00025 Score=63.06 Aligned_cols=120 Identities=20% Similarity=0.281 Sum_probs=56.1
Q ss_pred cccccccceeeccccceeeceEEEeeccccccccccccccCccCccceeEEEeecCcccccccccCCCccccceEEEEE-
Q 044279 45 IKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVA- 123 (305)
Q Consensus 45 ~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~- 123 (305)
+..+.++++|++++|.+ ..++ .+ -.+|+.|.+..| .....+++ .+..+|++|.++
T Consensus 48 ~~~~~~l~~L~Is~c~L---------------~sLP-~L--P~sLtsL~Lsnc-~nLtsLP~-----~LP~nLe~L~Ls~ 103 (426)
T PRK15386 48 IEEARASGRLYIKDCDI---------------ESLP-VL--PNELTEITIENC-NNLTTLPG-----SIPEGLEKLTVCH 103 (426)
T ss_pred HHHhcCCCEEEeCCCCC---------------cccC-CC--CCCCcEEEccCC-CCcccCCc-----hhhhhhhheEccC
Confidence 44567777777777652 2333 11 124666666553 11111111 122346667766
Q ss_pred cCCCccccccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCCcCCCC-CCCCEEEEeccccc
Q 044279 124 SPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLKWIRCA-PNLQFLYVSDCQVL 200 (305)
Q Consensus 124 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~-~~L~~L~l~~~~~~ 200 (305)
|..+..+ ++.|+.|++..+....++ .-+++|+.|.+.++........-..+ ++|++|++++|..+
T Consensus 104 Cs~L~sL---P~sLe~L~L~~n~~~~L~---------~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i 169 (426)
T PRK15386 104 CPEISGL---PESVRSLEIKGSATDSIK---------NVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI 169 (426)
T ss_pred ccccccc---ccccceEEeCCCCCcccc---------cCcchHhheeccccccccccccccccCCcccEEEecCCCcc
Confidence 5444433 234666666544333222 23355666666433211111100112 46777777776643
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.59 E-value=0.00012 Score=65.05 Aligned_cols=127 Identities=17% Similarity=0.205 Sum_probs=71.9
Q ss_pred ccceEEEEEcCCCccccccCCCccEEEEecee-cceecccccCCCcccCCCccceEeeeCCCCCccCCcCCCCCCCCEEE
Q 044279 115 SCVKRLTVASPWFSSLDFRMDHLETLEIVDCS-LESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLY 193 (305)
Q Consensus 115 ~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~ 193 (305)
.++++|+++.+.+..+|.-+++|++|.+++|. ++.++.. -+++|++|++.+|..+..+| ++|+.|+
T Consensus 52 ~~l~~L~Is~c~L~sLP~LP~sLtsL~Lsnc~nLtsLP~~--------LP~nLe~L~Ls~Cs~L~sLP-----~sLe~L~ 118 (426)
T PRK15386 52 RASGRLYIKDCDIESLPVLPNELTEITIENCNNLTTLPGS--------IPEGLEKLTVCHCPEISGLP-----ESVRSLE 118 (426)
T ss_pred cCCCEEEeCCCCCcccCCCCCCCcEEEccCCCCcccCCch--------hhhhhhheEccCcccccccc-----cccceEE
Confidence 45889999944777777445579999999887 7666632 24689999999886655443 4577777
Q ss_pred Eeccc--cccccccccCCCC--Ccccc--cccc-cc-CccceeeccCcccCceecCCCCCCCCCceEEeeCC
Q 044279 194 VSDCQ--VLSEIIGTYESPG--TSEIE--ESHH-FL-SNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDC 257 (305)
Q Consensus 194 l~~~~--~~~~~~~~~~~~~--~~~~~--~~~~-~~-~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c 257 (305)
+.++. .+..+|....... ..... .... .+ ++|++|.+.+|..+. ++... -.+|+.|.++.+
T Consensus 119 L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~-LP~~L--P~SLk~L~ls~n 187 (426)
T PRK15386 119 IKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII-LPEKL--PESLQSITLHIE 187 (426)
T ss_pred eCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCccc-Ccccc--cccCcEEEeccc
Confidence 76532 2333333211100 00000 0000 11 467777777774332 22211 146777777554
No 56
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.57 E-value=1.8e-06 Score=80.07 Aligned_cols=56 Identities=36% Similarity=0.435 Sum_probs=36.8
Q ss_pred ccEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccce
Q 044279 4 LAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSW 61 (305)
Q Consensus 4 L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~ 61 (305)
|...+.++| .+..+..++.-+++|+.|++++|++..+- .+..++.|++|++++|++
T Consensus 166 L~~a~fsyN-~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L 221 (1096)
T KOG1859|consen 166 LATASFSYN-RLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCL 221 (1096)
T ss_pred Hhhhhcchh-hHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchh
Confidence 444556666 55566666666777777777777776663 566777777777777763
No 57
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.45 E-value=6.8e-06 Score=75.81 Aligned_cols=136 Identities=19% Similarity=0.158 Sum_probs=64.9
Q ss_pred cccccccccccCC-cccc--CCcccccccccceeeccccceeeceEEEeeccccccccccccccCccCccceeEEEeecC
Q 044279 24 KLINLCHLNLSNT-KIRE--LPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVD 100 (305)
Q Consensus 24 ~l~~L~~L~l~~~-~l~~--lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 100 (305)
.++.|+.+.+..+ .+.. +-.....+++|++|+++++..... ............+++|+.+++.++ .
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---------~~~~~~~~~~~~~~~L~~l~l~~~--~ 254 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLIT---------LSPLLLLLLLSICRKLKSLDLSGC--G 254 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccc---------cchhHhhhhhhhcCCcCccchhhh--h
Confidence 3566666666665 3433 323345666777777765311000 000111123344566666666662 2
Q ss_pred cccccccccCCCccccceEEEEE-cCCCcccc-----ccCCCccEEEEecee-cceecccccCCCcccCCCccceEeeeC
Q 044279 101 THAFCRFQSSPKLQSCVKRLTVA-SPWFSSLD-----FRMDHLETLEIVDCS-LESINIYFGDQGRTYCFRNLRHLSVKD 173 (305)
Q Consensus 101 ~~~~~~l~~~~~~~~~L~~L~l~-~~~~~~~~-----~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~~~~~~L~~L~L~~ 173 (305)
......+......+++|+.|.+. |..+++.. ..++.|++|++++|. +++...... ..++++++.|.+..
T Consensus 255 ~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~----~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 255 LVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEAL----LKNCPNLRELKLLS 330 (482)
T ss_pred ccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHH----HHhCcchhhhhhhh
Confidence 22222222223334557777755 54444433 566677777777776 433222111 13455555554443
Q ss_pred C
Q 044279 174 C 174 (305)
Q Consensus 174 ~ 174 (305)
+
T Consensus 331 ~ 331 (482)
T KOG1947|consen 331 L 331 (482)
T ss_pred c
Confidence 3
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.41 E-value=6e-05 Score=72.09 Aligned_cols=19 Identities=16% Similarity=0.394 Sum_probs=9.3
Q ss_pred ccCCCccEEEEeceeccee
Q 044279 132 FRMDHLETLEIVDCSLESI 150 (305)
Q Consensus 132 ~~~~~L~~L~l~~~~l~~~ 150 (305)
.++++|..||+++++++.+
T Consensus 170 ~sFpNL~sLDIS~TnI~nl 188 (699)
T KOG3665|consen 170 ASFPNLRSLDISGTNISNL 188 (699)
T ss_pred hccCccceeecCCCCccCc
Confidence 4455555555555544433
No 59
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.12 E-value=2.3e-05 Score=72.36 Aligned_cols=172 Identities=20% Similarity=0.170 Sum_probs=100.2
Q ss_pred cccccceeeccccceeeceEEEeeccccccccccccccCccCccceeEEEe-ecCcccccccccCCCccccceEEEEE-c
Q 044279 47 YLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLC-FVDTHAFCRFQSSPKLQSCVKRLTVA-S 124 (305)
Q Consensus 47 ~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~l~~~~~~~~~L~~L~l~-~ 124 (305)
.+++|+.+.+.++.... ..........++.|+.|++..+ ................+++|++++++ +
T Consensus 186 ~~~~L~~l~l~~~~~~~------------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~ 253 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKIT------------DDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGC 253 (482)
T ss_pred hCchhhHhhhcccccCC------------hhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhh
Confidence 46788888888875321 2224566778888998888751 11111111122244455678899999 6
Q ss_pred CCCcccc-----ccCCCccEEEEecee-cceecccccCCCcccCCCccceEeeeCCCCCccC---CcCCCCCCCCEEEEe
Q 044279 125 PWFSSLD-----FRMDHLETLEIVDCS-LESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDL---KWIRCAPNLQFLYVS 195 (305)
Q Consensus 125 ~~~~~~~-----~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~---~~~~~~~~L~~L~l~ 195 (305)
..+++.. ..+++|+.|.+..|. +++.+.... ...+++|++|++++|..+++. .....+++|+.|.+.
T Consensus 254 ~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i----~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~ 329 (482)
T KOG1947|consen 254 GLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSI----AERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLL 329 (482)
T ss_pred hccCchhHHHHHhhCCCcceEccCCCCccchhHHHHH----HHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhh
Confidence 6566655 458899999988887 666665443 367888999999999777553 123356766666554
Q ss_pred ccc---cccccccccCCC-C-CccccccccccCccceeeccCcc
Q 044279 196 DCQ---VLSEIIGTYESP-G-TSEIEESHHFLSNLMVIDLQHLP 234 (305)
Q Consensus 196 ~~~---~~~~~~~~~~~~-~-~~~~~~~~~~~~~L~~L~l~~~~ 234 (305)
.+. .++......-.. . +.........+++++.+.+.+|.
T Consensus 330 ~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 330 SLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG 373 (482)
T ss_pred hcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh
Confidence 443 233322100000 0 11122244566666666666553
No 60
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.09 E-value=0.00013 Score=60.48 Aligned_cols=184 Identities=15% Similarity=0.103 Sum_probs=87.7
Q ss_pred cccEEeCCCCCCccc-----cchhhhcccccccccccCCcc---c-cCC-------cccccccccceeeccccceeeceE
Q 044279 3 ALAVLDLSYNFDLVE-----LPEAIGKLINLCHLNLSNTKI---R-ELP-------AGIKYLKNLKILRLDVFSWFSTEL 66 (305)
Q Consensus 3 ~L~~L~l~~~~~~~~-----lp~~~~~l~~L~~L~l~~~~l---~-~lp-------~~~~~l~~L~~L~l~~~~~~~~~~ 66 (305)
.+..+++||| .++. +...|.+-.+|+..+++.... + .+| +.+-+|+.|++++++.|-+-.
T Consensus 31 ~~~evdLSGN-tigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~--- 106 (388)
T COG5238 31 ELVEVDLSGN-TIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS--- 106 (388)
T ss_pred ceeEEeccCC-cccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc---
Confidence 4567788888 6542 233344445666655544311 1 222 223456677777777664311
Q ss_pred EEeeccccccccccccccCccCccceeEEEeecCcccccc------cccC-----CCccccceEEEEEcCCCcccc----
Q 044279 67 VALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCR------FQSS-----PKLQSCVKRLTVASPWFSSLD---- 131 (305)
Q Consensus 67 ~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~------l~~~-----~~~~~~L~~L~l~~~~~~~~~---- 131 (305)
+..+.+...+..-+.|.+|.+.. +....+.. +..+ ..-.+.|+++...-|.+...+
T Consensus 107 -------~~~e~L~d~is~~t~l~HL~l~N--nGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~ 177 (388)
T COG5238 107 -------EFPEELGDLISSSTDLVHLKLNN--NGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELS 177 (388)
T ss_pred -------ccchHHHHHHhcCCCceeEEeec--CCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHH
Confidence 11222333455666666666665 32221110 1110 011123555555544444333
Q ss_pred ----ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCC-----cCCCCCCCCEEEEecccc
Q 044279 132 ----FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK-----WIRCAPNLQFLYVSDCQV 199 (305)
Q Consensus 132 ----~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~-----~~~~~~~L~~L~l~~~~~ 199 (305)
..-..|.++.+..|.++.-++..+..-....+++|+.|||.+|.....-+ .+...+.|+.|.+.+|-.
T Consensus 178 a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCll 254 (388)
T COG5238 178 AALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLL 254 (388)
T ss_pred HHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhh
Confidence 22356777777776655443332111002345677777777773221111 233445677777777653
No 61
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.79 E-value=0.00029 Score=58.47 Aligned_cols=224 Identities=13% Similarity=0.074 Sum_probs=131.6
Q ss_pred cchhhhcccccccccccCCccc-----cCCcccccccccceeeccccceeec-eEEEeeccccccccccccccCccCccc
Q 044279 18 LPEAIGKLINLCHLNLSNTKIR-----ELPAGIKYLKNLKILRLDVFSWFST-ELVALHHNFCCATTVLAGLESLENIHD 91 (305)
Q Consensus 18 lp~~~~~l~~L~~L~l~~~~l~-----~lp~~~~~l~~L~~L~l~~~~~~~~-~~~l~~~~~~~~~~~~~~l~~l~~L~~ 91 (305)
.-..+..+..+..+++|+|.+. .+-..|.+-.+|+..+++.--...+ +.+ ......+.+.+..|++|+.
T Consensus 22 v~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~-----~~~L~~Ll~aLlkcp~l~~ 96 (388)
T COG5238 22 VVEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDEL-----YSNLVMLLKALLKCPRLQK 96 (388)
T ss_pred HHHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHH-----HHHHHHHHHHHhcCCccee
Confidence 3344666888999999999875 2334455666777777765321000 000 0012234456778999999
Q ss_pred eeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc-----------------ccCCCccEEEEeceecceecccc
Q 044279 92 ISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD-----------------FRMDHLETLEIVDCSLESINIYF 154 (305)
Q Consensus 92 L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~-----------------~~~~~L~~L~l~~~~l~~~~~~~ 154 (305)
.+++.+-......+.+.....-...|.+|.++.|++..+. ..-|.|+++....|+++.-+...
T Consensus 97 v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~ 176 (388)
T COG5238 97 VDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKEL 176 (388)
T ss_pred eeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHH
Confidence 9998742222223333333233345999999966655433 66788999999888866555332
Q ss_pred cCCCcccCCCccceEeeeCCCCCcc--CC-----cCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccce
Q 044279 155 GDQGRTYCFRNLRHLSVKDCHFMTD--LK-----WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMV 227 (305)
Q Consensus 155 ~~~~~~~~~~~L~~L~L~~~~~l~~--~~-----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 227 (305)
++..+....+|+.+.+..| .+.. +. .+..+++|+.|++.+|.....-. .........++.|+.
T Consensus 177 -~a~~l~sh~~lk~vki~qN-gIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS--------~~La~al~~W~~lrE 246 (388)
T COG5238 177 -SAALLESHENLKEVKIQQN-GIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGS--------RYLADALCEWNLLRE 246 (388)
T ss_pred -HHHHHHhhcCceeEEeeec-CcCcchhHHHHHHHHHHhCcceeeeccccchhhhhH--------HHHHHHhcccchhhh
Confidence 1111234478999999988 4332 11 13357889999999976432110 011124567788899
Q ss_pred eeccCcccCcee-------cCCCCCCCCCceEEeeCC
Q 044279 228 IDLQHLPSLTSI-------CCRAVPLPSLKTISVYDC 257 (305)
Q Consensus 228 L~l~~~~~l~~~-------~~~~~~~~~L~~L~l~~c 257 (305)
|.+.+| -+..- .+....+|+|..|...++
T Consensus 247 L~lnDC-lls~~G~~~v~~~f~e~~~p~l~~L~~~Yn 282 (388)
T COG5238 247 LRLNDC-LLSNEGVKSVLRRFNEKFVPNLMPLPGDYN 282 (388)
T ss_pred ccccch-hhccccHHHHHHHhhhhcCCCccccccchh
Confidence 999888 33311 111224677777776555
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.77 E-value=0.0024 Score=50.86 Aligned_cols=38 Identities=24% Similarity=0.344 Sum_probs=27.8
Q ss_pred ccCCCccEEEEeceecceecc---cccCCCcccCCCccceEeeeCC
Q 044279 132 FRMDHLETLEIVDCSLESINI---YFGDQGRTYCFRNLRHLSVKDC 174 (305)
Q Consensus 132 ~~~~~L~~L~l~~~~l~~~~~---~~~~~~~~~~~~~L~~L~L~~~ 174 (305)
..++.|+.|.+-+|+++.-.- .. ...+|+|+.||+.+-
T Consensus 110 a~~p~L~~Ltll~Npv~~k~~YR~yv-----l~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 110 ASCPKLEYLTLLGNPVEHKKNYRLYV-----LYKLPSLRTLDFQKV 150 (233)
T ss_pred ccCCccceeeecCCchhcccCceeEE-----EEecCcceEeehhhh
Confidence 567888999988888655442 22 367899999998865
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.68 E-value=0.0001 Score=61.21 Aligned_cols=79 Identities=24% Similarity=0.138 Sum_probs=61.9
Q ss_pred cccEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeecccccccccccc
Q 044279 3 ALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAG 82 (305)
Q Consensus 3 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~ 82 (305)
+.+.|+..|| .++++. ...+|+.|+.|.|+-|+++.+ ..+.+|++|++|+|..|.+.+ ......
T Consensus 20 ~vkKLNcwg~-~L~DIs-ic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~s-------------ldEL~Y 83 (388)
T KOG2123|consen 20 NVKKLNCWGC-GLDDIS-ICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIES-------------LDELEY 83 (388)
T ss_pred HhhhhcccCC-CccHHH-HHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhccccc-------------HHHHHH
Confidence 4567888888 777663 367889999999999999988 468999999999999998763 334456
Q ss_pred ccCccCccceeEEEe
Q 044279 83 LESLENIHDISITLC 97 (305)
Q Consensus 83 l~~l~~L~~L~l~~~ 97 (305)
+.++++|+.|.+..|
T Consensus 84 LknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 84 LKNLPSLRTLWLDEN 98 (388)
T ss_pred HhcCchhhhHhhccC
Confidence 677888888887763
No 64
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.54 E-value=0.00041 Score=51.73 Aligned_cols=83 Identities=20% Similarity=0.303 Sum_probs=62.1
Q ss_pred ccEEeCCCCCCccccchh---hhcccccccccccCCccccCCcccc-cccccceeeccccceeeceEEEeeccccccccc
Q 044279 4 LAVLDLSYNFDLVELPEA---IGKLINLCHLNLSNTKIRELPAGIK-YLKNLKILRLDVFSWFSTELVALHHNFCCATTV 79 (305)
Q Consensus 4 L~~L~l~~~~~~~~lp~~---~~~l~~L~~L~l~~~~l~~lp~~~~-~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~ 79 (305)
+..++++.| .+..+++. +.+..+|...++++|.++.+|+.+. ..+...+|++.+|. ...+
T Consensus 29 ~h~ldLssc-~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne---------------isdv 92 (177)
T KOG4579|consen 29 LHFLDLSSC-QLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE---------------ISDV 92 (177)
T ss_pred hhhcccccc-hhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhh---------------hhhc
Confidence 456788888 66655544 4555677778899999998888765 44588999999988 4567
Q ss_pred cccccCccCccceeEEEeecCcccc
Q 044279 80 LAGLESLENIHDISITLCFVDTHAF 104 (305)
Q Consensus 80 ~~~l~~l~~L~~L~l~~~~~~~~~~ 104 (305)
|.++..|+.|+.+.++. +.....
T Consensus 93 PeE~Aam~aLr~lNl~~--N~l~~~ 115 (177)
T KOG4579|consen 93 PEELAAMPALRSLNLRF--NPLNAE 115 (177)
T ss_pred hHHHhhhHHhhhccccc--Cccccc
Confidence 88899999999999888 544443
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.40 E-value=7.1e-05 Score=62.18 Aligned_cols=74 Identities=19% Similarity=0.303 Sum_probs=37.5
Q ss_pred ceEEEEEcCCCcccc--ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCC---cCCCCCCCCE
Q 044279 117 VKRLTVASPWFSSLD--FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK---WIRCAPNLQF 191 (305)
Q Consensus 117 L~~L~l~~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~---~~~~~~~L~~ 191 (305)
++.|+.+.++++++. ..++.|+.|.|+.|.++++.. +..|.+|+.|.|..| .+.++. .+.++|+|+.
T Consensus 21 vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~p-------l~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 21 VKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAP-------LQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRT 92 (388)
T ss_pred hhhhcccCCCccHHHHHHhcccceeEEeeccccccchh-------HHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhh
Confidence 444444444455555 555666666666555444331 134555666666555 444432 3345555555
Q ss_pred EEEeccc
Q 044279 192 LYVSDCQ 198 (305)
Q Consensus 192 L~l~~~~ 198 (305)
|-|..|.
T Consensus 93 LWL~ENP 99 (388)
T KOG2123|consen 93 LWLDENP 99 (388)
T ss_pred HhhccCC
Confidence 5555544
No 66
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.34 E-value=0.00055 Score=51.05 Aligned_cols=36 Identities=11% Similarity=0.157 Sum_probs=15.8
Q ss_pred ceEEEEEcCCCcccc---ccCCCccEEEEeceecceecc
Q 044279 117 VKRLTVASPWFSSLD---FRMDHLETLEIVDCSLESINI 152 (305)
Q Consensus 117 L~~L~l~~~~~~~~~---~~~~~L~~L~l~~~~l~~~~~ 152 (305)
|++|+++.|.+...+ .++.++..|+...+...+++.
T Consensus 102 Lr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~ 140 (177)
T KOG4579|consen 102 LRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDV 140 (177)
T ss_pred hhhcccccCccccchHHHHHHHhHHHhcCCCCccccCcH
Confidence 555555544444333 224444444444443444443
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.24 E-value=0.002 Score=31.97 Aligned_cols=21 Identities=38% Similarity=0.597 Sum_probs=12.4
Q ss_pred cccEEeCCCCCCccccchhhhc
Q 044279 3 ALAVLDLSYNFDLVELPEAIGK 24 (305)
Q Consensus 3 ~L~~L~l~~~~~~~~lp~~~~~ 24 (305)
+|++|++++| .++.+|+.+++
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSS-EESEEGTTTTT
T ss_pred CccEEECCCC-cCEeCChhhcC
Confidence 4566666666 65666655443
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.08 E-value=0.0016 Score=32.31 Aligned_cols=21 Identities=29% Similarity=0.494 Sum_probs=16.2
Q ss_pred ccccccccCCccccCCccccc
Q 044279 27 NLCHLNLSNTKIRELPAGIKY 47 (305)
Q Consensus 27 ~L~~L~l~~~~l~~lp~~~~~ 47 (305)
+|++|++++|+++.+|..+++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 478888888888888877654
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.70 E-value=0.0061 Score=50.39 Aligned_cols=107 Identities=25% Similarity=0.283 Sum_probs=69.8
Q ss_pred ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCC--CCCccCCc-CCCCCCCCEEEEeccccc--cccccc
Q 044279 132 FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDC--HFMTDLKW-IRCAPNLQFLYVSDCQVL--SEIIGT 206 (305)
Q Consensus 132 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~--~~l~~~~~-~~~~~~L~~L~l~~~~~~--~~~~~~ 206 (305)
..+..|+.+++.++.+++... +-.+++|++|.++.| +....+.. +..+|+|+++.+++|.+- .++.
T Consensus 40 d~~~~le~ls~~n~gltt~~~-------~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-- 110 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLTN-------FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-- 110 (260)
T ss_pred ccccchhhhhhhccceeeccc-------CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc--
Confidence 456677778877776544432 136789999999998 33344442 346799999999997742 2222
Q ss_pred cCCCCCccccccccccCccceeeccCcccCceecCC----CCCCCCCceEEeeCCCC
Q 044279 207 YESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICCR----AVPLPSLKTISVYDCPG 259 (305)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~----~~~~~~L~~L~l~~c~~ 259 (305)
....+.+|..|++.+|+... +... ..-+++|+.|+-.++..
T Consensus 111 -----------pl~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 111 -----------PLKELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDVDG 155 (260)
T ss_pred -----------hhhhhcchhhhhcccCCccc-cccHHHHHHHHhhhhccccccccCC
Confidence 35677889999999995433 2111 12478888887755543
No 70
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.49 E-value=0.002 Score=51.28 Aligned_cols=86 Identities=24% Similarity=0.336 Sum_probs=57.1
Q ss_pred CccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCC--cCC-CCCCCCEEEEeccccccccccccCCCCC
Q 044279 136 HLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK--WIR-CAPNLQFLYVSDCQVLSEIIGTYESPGT 212 (305)
Q Consensus 136 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~--~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 212 (305)
.++.++=+++.+...+.+-+ ..++.++.|.+.+|..+.++. -++ -.++|+.|+|++|..|++...
T Consensus 102 ~IeaVDAsds~I~~eGle~L-----~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL------- 169 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHL-----RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL------- 169 (221)
T ss_pred eEEEEecCCchHHHHHHHHH-----hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH-------
Confidence 35566655555555554432 667778888888887777752 222 357888888888888765443
Q ss_pred ccccccccccCccceeeccCcccCc
Q 044279 213 SEIEESHHFLSNLMVIDLQHLPSLT 237 (305)
Q Consensus 213 ~~~~~~~~~~~~L~~L~l~~~~~l~ 237 (305)
..+..+++|+.|.|.+.+.+.
T Consensus 170 ----~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 170 ----ACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred ----HHHHHhhhhHHHHhcCchhhh
Confidence 346678888888888876554
No 71
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.95 E-value=0.013 Score=48.51 Aligned_cols=82 Identities=28% Similarity=0.335 Sum_probs=53.8
Q ss_pred cccEEeCCCCCCccccchhhhcccccccccccCC--ccc-cCCcccccccccceeeccccceeeceEEEeeccccccccc
Q 044279 3 ALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNT--KIR-ELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTV 79 (305)
Q Consensus 3 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~--~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~ 79 (305)
+|+.|++.+. .++.+ ..+-.+++|++|.++.| ++. .++.-...+++|+++.+++|++. ....
T Consensus 44 ~le~ls~~n~-gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~-------------~lst 108 (260)
T KOG2739|consen 44 ELELLSVINV-GLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK-------------DLST 108 (260)
T ss_pred chhhhhhhcc-ceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc-------------cccc
Confidence 4566666666 44333 12346678888888888 333 55545566688888888888764 2445
Q ss_pred cccccCccCccceeEEEeec
Q 044279 80 LAGLESLENIHDISITLCFV 99 (305)
Q Consensus 80 ~~~l~~l~~L~~L~l~~~~~ 99 (305)
...+..+.+|..|++..|..
T Consensus 109 l~pl~~l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 109 LRPLKELENLKSLDLFNCSV 128 (260)
T ss_pred cchhhhhcchhhhhcccCCc
Confidence 56677788888888877543
No 72
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.71 E-value=0.018 Score=26.47 Aligned_cols=17 Identities=53% Similarity=0.683 Sum_probs=7.6
Q ss_pred CcccEEeCCCCCCccccc
Q 044279 2 HALAVLDLSYNFDLVELP 19 (305)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp 19 (305)
++|+.|++++| .++++|
T Consensus 1 ~~L~~L~l~~n-~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNN-RLTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCC-CCCCCc
Confidence 35666666666 455443
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.10 E-value=0.0045 Score=49.25 Aligned_cols=65 Identities=17% Similarity=0.214 Sum_probs=48.9
Q ss_pred ccCCCccEEEEecee-cceecccccCCCcccCCCccceEeeeCCCCCccC--CcCCCCCCCCEEEEeccccc
Q 044279 132 FRMDHLETLEIVDCS-LESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDL--KWIRCAPNLQFLYVSDCQVL 200 (305)
Q Consensus 132 ~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~--~~~~~~~~L~~L~l~~~~~~ 200 (305)
..++.++.|.+.+|. +.+...+.. ....++|+.|+|++|+.+++- .++..+++|+.|.+.+-..+
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l----~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERL----GGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred hccchhhhheeccccchhhHHHHHh----cccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhh
Confidence 567778888888887 665554443 145788999999999988885 46778899999988885554
No 74
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.90 E-value=0.86 Score=33.52 Aligned_cols=99 Identities=17% Similarity=0.229 Sum_probs=41.5
Q ss_pred cCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCC--cCCCCCCCCEEEEeccccccccccccCCC
Q 044279 133 RMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK--WIRCAPNLQFLYVSDCQVLSEIIGTYESP 210 (305)
Q Consensus 133 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 210 (305)
.+.+|+.+.+.. .++.++... +..+.+|+.+.+... +..++ .+..+++|+.+.+.+ .+..+..
T Consensus 10 ~~~~l~~i~~~~-~~~~I~~~~-----F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~----- 74 (129)
T PF13306_consen 10 NCSNLESITFPN-TIKKIGENA-----FSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN--NLKSIGD----- 74 (129)
T ss_dssp T-TT--EEEETS-T--EE-TTT-----TTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS--TT-EE-T-----
T ss_pred CCCCCCEEEECC-CeeEeChhh-----ccccccccccccccc--ccccceeeeecccccccccccc--ccccccc-----
Confidence 345666666653 355555444 255666777777653 33332 355666677777744 2222222
Q ss_pred CCccccccccccCccceeeccCcccCceecCCCCCCCCCceEEe
Q 044279 211 GTSEIEESHHFLSNLMVIDLQHLPSLTSICCRAVPLPSLKTISV 254 (305)
Q Consensus 211 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 254 (305)
..+..+++|+.+.+.. .+..++.....-.+|+.+.+
T Consensus 75 ------~~F~~~~~l~~i~~~~--~~~~i~~~~f~~~~l~~i~~ 110 (129)
T PF13306_consen 75 ------NAFSNCTNLKNIDIPS--NITEIGSSSFSNCNLKEINI 110 (129)
T ss_dssp ------TTTTT-TTECEEEETT--T-BEEHTTTTTT-T--EEE-
T ss_pred ------ccccccccccccccCc--cccEEchhhhcCCCceEEEE
Confidence 1344566777776644 24444443332225665555
No 75
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.62 E-value=0.17 Score=25.88 Aligned_cols=20 Identities=45% Similarity=0.599 Sum_probs=11.8
Q ss_pred CCcccEEeCCCCCCccccchh
Q 044279 1 MHALAVLDLSYNFDLVELPEA 21 (305)
Q Consensus 1 l~~L~~L~l~~~~~~~~lp~~ 21 (305)
+++|++|++++| .+..+|..
T Consensus 1 L~~L~~L~L~~N-~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNN-QLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCC-cCCcCCHH
Confidence 355666666666 66666543
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.62 E-value=0.17 Score=25.88 Aligned_cols=20 Identities=45% Similarity=0.599 Sum_probs=11.8
Q ss_pred CCcccEEeCCCCCCccccchh
Q 044279 1 MHALAVLDLSYNFDLVELPEA 21 (305)
Q Consensus 1 l~~L~~L~l~~~~~~~~lp~~ 21 (305)
+++|++|++++| .+..+|..
T Consensus 1 L~~L~~L~L~~N-~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNN-QLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCC-cCCcCCHH
Confidence 355666666666 66666543
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.99 E-value=0.027 Score=46.10 Aligned_cols=77 Identities=23% Similarity=0.204 Sum_probs=54.3
Q ss_pred ccEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeeccccccccccccc
Q 044279 4 LAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGL 83 (305)
Q Consensus 4 L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l 83 (305)
..+||++.| .+..+-..++.+..|..||++.+.+..+|.+++....++++.+..|. ....|...
T Consensus 44 ~tvld~~s~-r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~---------------~~~~p~s~ 107 (326)
T KOG0473|consen 44 VTVLDLSSN-RLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN---------------HSQQPKSQ 107 (326)
T ss_pred eeeehhhhh-HHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc---------------hhhCCccc
Confidence 456777777 55555555667777777788777777777777777777777777776 45566667
Q ss_pred cCccCccceeEEE
Q 044279 84 ESLENIHDISITL 96 (305)
Q Consensus 84 ~~l~~L~~L~l~~ 96 (305)
...++++.++.-.
T Consensus 108 ~k~~~~k~~e~k~ 120 (326)
T KOG0473|consen 108 KKEPHPKKNEQKK 120 (326)
T ss_pred cccCCcchhhhcc
Confidence 7777777666655
No 78
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=87.88 E-value=2.9 Score=30.65 Aligned_cols=89 Identities=18% Similarity=0.223 Sum_probs=50.7
Q ss_pred ccCCCccceEeeeCCCCCccCC--cCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCc
Q 044279 160 TYCFRNLRHLSVKDCHFMTDLK--WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLT 237 (305)
Q Consensus 160 ~~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 237 (305)
+..+.+|+.+.+.. .++.+. .+..+++|+.+.+.+. +..+.. ..+..+++|+.+.+.. .+.
T Consensus 8 F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~-----------~~F~~~~~l~~i~~~~--~~~ 70 (129)
T PF13306_consen 8 FYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN--LTSIGD-----------NAFSNCKSLESITFPN--NLK 70 (129)
T ss_dssp TTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST--TSCE-T-----------TTTTT-TT-EEEEETS--TT-
T ss_pred HhCCCCCCEEEECC--CeeEeChhhccccccccccccccc--ccccce-----------eeeecccccccccccc--ccc
Confidence 36778899999875 344543 5778889999999873 555544 2566787899999965 555
Q ss_pred eecCCCC-CCCCCceEEeeCCCCCCCCCCCC
Q 044279 238 SICCRAV-PLPSLKTISVYDCPGLRKLPLNS 267 (305)
Q Consensus 238 ~~~~~~~-~~~~L~~L~l~~c~~l~~~~~~~ 267 (305)
.++.... .+++|+.+.+.. .++.++...
T Consensus 71 ~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~ 99 (129)
T PF13306_consen 71 SIGDNAFSNCTNLKNIDIPS--NITEIGSSS 99 (129)
T ss_dssp EE-TTTTTT-TTECEEEETT--T-BEEHTTT
T ss_pred ccccccccccccccccccCc--cccEEchhh
Confidence 6655444 488999999843 355554443
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=87.09 E-value=0.062 Score=44.03 Aligned_cols=58 Identities=19% Similarity=0.121 Sum_probs=53.1
Q ss_pred cccEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccce
Q 044279 3 ALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSW 61 (305)
Q Consensus 3 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~ 61 (305)
.|.+||++.| .+.-+|..++....++.++++.|..+..|..++..++++++++.++.+
T Consensus 66 ~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 66 RLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKTEF 123 (326)
T ss_pred HHHHHhccHh-hHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhccCcc
Confidence 4667899988 888999999999999999999999999999999999999999999874
No 80
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=85.87 E-value=0.52 Score=24.13 Aligned_cols=16 Identities=44% Similarity=0.756 Sum_probs=7.2
Q ss_pred CccceEeeeCCCCCcc
Q 044279 164 RNLRHLSVKDCHFMTD 179 (305)
Q Consensus 164 ~~L~~L~L~~~~~l~~ 179 (305)
++|++|+|++|..+++
T Consensus 2 ~~L~~L~l~~C~~itD 17 (26)
T smart00367 2 PNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCEeCCCCCCCcCH
Confidence 3444444444444443
No 81
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=80.06 E-value=1 Score=22.43 Aligned_cols=15 Identities=40% Similarity=0.477 Sum_probs=8.5
Q ss_pred CCcccEEeCCCCCCcc
Q 044279 1 MHALAVLDLSYNFDLV 16 (305)
Q Consensus 1 l~~L~~L~l~~~~~~~ 16 (305)
+++|++|++++| .++
T Consensus 1 ~~~L~~L~l~~n-~i~ 15 (24)
T PF13516_consen 1 NPNLETLDLSNN-QIT 15 (24)
T ss_dssp -TT-SEEE-TSS-BEH
T ss_pred CCCCCEEEccCC-cCC
Confidence 467778888777 454
No 82
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=76.18 E-value=1.8 Score=22.29 Aligned_cols=17 Identities=47% Similarity=0.700 Sum_probs=8.2
Q ss_pred cccEEeCCCCCCccccch
Q 044279 3 ALAVLDLSYNFDLVELPE 20 (305)
Q Consensus 3 ~L~~L~l~~~~~~~~lp~ 20 (305)
+|+.|++++| .++.+|+
T Consensus 3 ~L~~L~vs~N-~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNN-QLTSLPE 19 (26)
T ss_pred ccceeecCCC-ccccCcc
Confidence 3445555555 4444443
No 83
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=72.43 E-value=0.94 Score=41.85 Aligned_cols=12 Identities=42% Similarity=0.498 Sum_probs=5.6
Q ss_pred CCCCCEEEEecc
Q 044279 186 APNLQFLYVSDC 197 (305)
Q Consensus 186 ~~~L~~L~l~~~ 197 (305)
.|+|+.|+|++|
T Consensus 243 apklk~L~LS~N 254 (585)
T KOG3763|consen 243 APKLKTLDLSHN 254 (585)
T ss_pred cchhheeecccc
Confidence 344444444443
No 84
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=70.82 E-value=3.9 Score=21.04 Aligned_cols=14 Identities=43% Similarity=0.479 Sum_probs=8.3
Q ss_pred CcccEEeCCCCCCcc
Q 044279 2 HALAVLDLSYNFDLV 16 (305)
Q Consensus 2 ~~L~~L~l~~~~~~~ 16 (305)
.+|+.|+++.| .++
T Consensus 2 ~~L~~L~L~~N-kI~ 15 (26)
T smart00365 2 TNLEELDLSQN-KIK 15 (26)
T ss_pred CccCEEECCCC-ccc
Confidence 45666666666 443
No 85
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=62.52 E-value=6.3 Score=20.47 Aligned_cols=14 Identities=50% Similarity=0.477 Sum_probs=9.7
Q ss_pred CcccEEeCCCCCCcc
Q 044279 2 HALAVLDLSYNFDLV 16 (305)
Q Consensus 2 ~~L~~L~l~~~~~~~ 16 (305)
++|++|+|++| .++
T Consensus 2 ~~L~~LdL~~N-~i~ 15 (28)
T smart00368 2 PSLRELDLSNN-KLG 15 (28)
T ss_pred CccCEEECCCC-CCC
Confidence 46777788777 554
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=56.79 E-value=5.2 Score=37.20 Aligned_cols=90 Identities=11% Similarity=0.129 Sum_probs=53.4
Q ss_pred ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCC-CccCCcCCC--CCCCCEEEEeccccccccccccC
Q 044279 132 FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHF-MTDLKWIRC--APNLQFLYVSDCQVLSEIIGTYE 208 (305)
Q Consensus 132 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~-l~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~ 208 (305)
.+.+.+..+++++|++..++.-... ....|+|+.|+|++|.. +.+.+++.+ ..-|++|.+.+|+..++.....+
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~ssl---sq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~ 291 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSL---SQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSE 291 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHH---HHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHH
Confidence 6678888888888885544422110 25578899999998832 222233332 24488888888887766544211
Q ss_pred CCCCccccccccccCccceee
Q 044279 209 SPGTSEIEESHHFLSNLMVID 229 (305)
Q Consensus 209 ~~~~~~~~~~~~~~~~L~~L~ 229 (305)
........||+|..||
T Consensus 292 -----yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 292 -----YVSAIRELFPKLLRLD 307 (585)
T ss_pred -----HHHHHHHhcchheeec
Confidence 1111233677776664
No 87
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=55.05 E-value=0.13 Score=47.40 Aligned_cols=35 Identities=34% Similarity=0.450 Sum_probs=17.7
Q ss_pred ccEEeCCCCCCccc-----cchhhhcccccccccccCCccc
Q 044279 4 LAVLDLSYNFDLVE-----LPEAIGKLINLCHLNLSNTKIR 39 (305)
Q Consensus 4 L~~L~l~~~~~~~~-----lp~~~~~l~~L~~L~l~~~~l~ 39 (305)
+..|++.+| .+.. +-..+.-...|..|+++.|.+.
T Consensus 89 l~~L~L~~~-~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~ 128 (478)
T KOG4308|consen 89 LLHLSLANN-RLGDRGAEELAQALKTLPTLGQLDLSGNNLG 128 (478)
T ss_pred HHHhhhhhC-ccccchHHHHHHHhcccccHhHhhcccCCCc
Confidence 444555555 3331 2223455556666666666554
No 88
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=24.04 E-value=35 Score=16.34 Aligned_cols=14 Identities=36% Similarity=0.646 Sum_probs=6.5
Q ss_pred cccccccCCccccC
Q 044279 28 LCHLNLSNTKIREL 41 (305)
Q Consensus 28 L~~L~l~~~~l~~l 41 (305)
|..|++.+.+++.+
T Consensus 2 LVeL~m~~S~lekL 15 (20)
T PF07725_consen 2 LVELNMPYSKLEKL 15 (20)
T ss_pred cEEEECCCCChHHh
Confidence 44455544444444
Done!