Query 044279
Match_columns 305
No_of_seqs 132 out of 2038
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 23:01:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044279.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044279hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.9 2.3E-24 7.9E-29 187.9 17.4 236 2-288 81-317 (328)
2 4fcg_A Uncharacterized protein 99.9 3.5E-22 1.2E-26 174.1 18.1 193 25-271 80-277 (328)
3 1ogq_A PGIP-2, polygalacturona 99.9 1.5E-22 5.1E-27 175.3 9.4 224 2-266 50-287 (313)
4 3o6n_A APL1; leucine-rich repe 99.9 4E-21 1.4E-25 171.3 17.9 80 1-96 68-150 (390)
5 2id5_A Lingo-1, leucine rich r 99.9 1.4E-20 4.7E-25 172.2 20.4 225 2-266 56-314 (477)
6 3oja_B Anopheles plasmodium-re 99.9 1.5E-20 5.2E-25 176.6 17.8 60 1-61 74-135 (597)
7 1xku_A Decorin; proteoglycan, 99.9 1.8E-20 6.1E-25 163.3 17.1 217 3-266 53-281 (330)
8 4eco_A Uncharacterized protein 99.8 2.1E-20 7.1E-25 176.8 16.9 233 2-268 305-586 (636)
9 3o53_A Protein LRIM1, AGAP0063 99.8 1.1E-20 3.8E-25 163.9 13.7 212 2-260 34-250 (317)
10 3v47_A TOLL-like receptor 5B a 99.8 6.4E-20 2.2E-24 166.6 19.1 113 135-267 275-390 (455)
11 4fmz_A Internalin; leucine ric 99.8 3.5E-20 1.2E-24 162.5 16.4 221 1-257 65-297 (347)
12 4ecn_A Leucine-rich repeat pro 99.8 5.1E-20 1.7E-24 178.3 18.8 232 3-268 549-826 (876)
13 2z66_A Variable lymphocyte rec 99.8 1.6E-20 5.6E-25 161.8 13.5 218 2-258 28-259 (306)
14 3oja_B Anopheles plasmodium-re 99.8 3.5E-20 1.2E-24 174.1 16.2 82 1-97 98-181 (597)
15 4fmz_A Internalin; leucine ric 99.8 3.4E-20 1.2E-24 162.6 15.0 217 1-265 109-328 (347)
16 3zyj_A Leucine-rich repeat-con 99.8 4.6E-20 1.6E-24 167.0 16.1 214 2-258 64-290 (440)
17 1xku_A Decorin; proteoglycan, 99.8 4.9E-20 1.7E-24 160.6 15.7 216 1-259 75-305 (330)
18 3zyi_A Leucine-rich repeat-con 99.8 4.1E-20 1.4E-24 168.0 15.8 217 2-258 75-301 (452)
19 2id5_A Lingo-1, leucine rich r 99.8 8E-20 2.7E-24 167.1 17.3 240 2-270 32-295 (477)
20 3v47_A TOLL-like receptor 5B a 99.8 4.5E-20 1.5E-24 167.7 15.2 130 116-264 276-412 (455)
21 1o6v_A Internalin A; bacterial 99.8 1.4E-19 4.8E-24 165.0 18.0 225 1-258 67-320 (466)
22 1ogq_A PGIP-2, polygalacturona 99.8 1.9E-20 6.6E-25 162.0 11.2 228 1-265 75-309 (313)
23 4eco_A Uncharacterized protein 99.8 4.3E-20 1.5E-24 174.6 14.6 247 1-270 272-565 (636)
24 2z80_A TOLL-like receptor 2, v 99.8 1.9E-20 6.5E-25 164.7 11.2 232 2-260 52-314 (353)
25 3oja_A Leucine-rich immune mol 99.8 5.3E-20 1.8E-24 168.6 14.4 212 2-260 34-250 (487)
26 2ft3_A Biglycan; proteoglycan, 99.8 1.8E-19 6.2E-24 157.1 17.0 224 3-265 34-281 (332)
27 2ft3_A Biglycan; proteoglycan, 99.8 6.9E-20 2.4E-24 159.8 14.0 231 2-260 54-307 (332)
28 3o6n_A APL1; leucine-rich repe 99.8 1.4E-19 4.7E-24 161.4 16.2 226 1-264 92-334 (390)
29 3t6q_A CD180 antigen; protein- 99.8 1.6E-19 5.6E-24 169.7 17.3 236 3-258 255-511 (606)
30 3zyi_A Leucine-rich repeat-con 99.8 4.2E-19 1.4E-23 161.3 19.1 223 4-267 56-285 (452)
31 3bz5_A Internalin-J, INLJ; leu 99.8 4.4E-19 1.5E-23 161.2 19.1 207 1-264 41-249 (457)
32 3zyj_A Leucine-rich repeat-con 99.8 5.6E-19 1.9E-23 159.9 18.8 221 4-267 45-274 (440)
33 3rgz_A Protein brassinosteroid 99.8 1.3E-19 4.4E-24 175.0 15.4 91 164-266 632-723 (768)
34 1ozn_A Reticulon 4 receptor; N 99.8 1.6E-19 5.4E-24 154.1 14.1 215 5-261 14-239 (285)
35 3rgz_A Protein brassinosteroid 99.8 1.4E-19 4.9E-24 174.7 15.4 233 2-271 394-704 (768)
36 3bz5_A Internalin-J, INLJ; leu 99.8 2.4E-19 8.3E-24 162.9 15.5 163 1-198 63-244 (457)
37 2z66_A Variable lymphocyte rec 99.8 2.8E-19 9.5E-24 154.1 15.0 227 5-271 10-247 (306)
38 1o6v_A Internalin A; bacterial 99.8 8.6E-19 2.9E-23 159.9 17.2 242 1-263 89-346 (466)
39 3vq2_A TLR4, TOLL-like recepto 99.8 2.3E-19 7.7E-24 168.8 13.4 248 2-278 285-551 (606)
40 2z7x_B TOLL-like receptor 1, v 99.8 4.4E-18 1.5E-22 157.2 20.5 131 132-270 321-467 (520)
41 3t6q_A CD180 antigen; protein- 99.8 2.1E-18 7E-23 162.2 18.6 58 3-61 34-93 (606)
42 1ozn_A Reticulon 4 receptor; N 99.8 6.7E-19 2.3E-23 150.2 13.2 197 2-234 32-236 (285)
43 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 5.3E-18 1.8E-22 158.1 20.2 130 133-270 351-496 (562)
44 3vq2_A TLR4, TOLL-like recepto 99.8 6.3E-19 2.1E-23 165.8 13.6 203 23-264 347-562 (606)
45 2z7x_B TOLL-like receptor 1, v 99.8 5.5E-18 1.9E-22 156.5 19.5 91 162-264 322-416 (520)
46 4ecn_A Leucine-rich repeat pro 99.8 5.4E-19 1.9E-23 171.2 13.0 242 1-271 490-776 (876)
47 2z81_A CD282 antigen, TOLL-lik 99.8 2.4E-18 8.2E-23 159.9 16.6 81 2-96 50-132 (549)
48 2z81_A CD282 antigen, TOLL-lik 99.8 1.5E-18 5.1E-23 161.3 15.1 82 1-96 73-157 (549)
49 1h6u_A Internalin H; cell adhe 99.8 7.5E-19 2.6E-23 151.7 11.8 189 23-258 38-228 (308)
50 2xwt_C Thyrotropin receptor; s 99.8 1.6E-18 5.3E-23 144.1 13.1 107 133-259 125-238 (239)
51 2z80_A TOLL-like receptor 2, v 99.8 1.5E-18 5.1E-23 152.6 12.5 226 2-270 31-300 (353)
52 3o53_A Protein LRIM1, AGAP0063 99.8 1.6E-18 5.3E-23 150.3 12.3 219 4-270 12-236 (317)
53 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 3.6E-17 1.2E-21 152.5 21.7 93 162-266 351-447 (562)
54 2o6q_A Variable lymphocyte rec 99.8 9.5E-18 3.2E-22 142.0 16.2 196 3-259 17-217 (270)
55 3j0a_A TOLL-like receptor 5; m 99.8 1.6E-17 5.5E-22 161.9 19.9 61 1-61 47-109 (844)
56 3j0a_A TOLL-like receptor 5; m 99.8 1.4E-17 4.7E-22 162.4 19.2 82 1-96 72-157 (844)
57 1jl5_A Outer protein YOPM; leu 99.8 1.5E-18 5.2E-23 157.6 11.6 232 2-265 11-274 (454)
58 3g06_A SSPH2 (leucine-rich rep 99.8 5.2E-18 1.8E-22 159.1 15.4 217 2-259 61-296 (622)
59 2z63_A TOLL-like receptor 4, v 99.8 3.6E-18 1.2E-22 159.3 14.2 223 2-270 282-517 (570)
60 2z63_A TOLL-like receptor 4, v 99.8 4.5E-18 1.5E-22 158.7 14.5 94 1-96 51-158 (570)
61 1h6u_A Internalin H; cell adhe 99.8 5.6E-18 1.9E-22 146.2 13.7 192 1-240 40-233 (308)
62 1p9a_G Platelet glycoprotein I 99.8 7.9E-18 2.7E-22 144.0 14.4 193 1-259 9-207 (290)
63 1wwl_A Monocyte differentiatio 99.7 1.2E-18 4E-23 150.7 7.0 223 3-265 44-291 (312)
64 1jl5_A Outer protein YOPM; leu 99.7 5.6E-17 1.9E-21 147.2 18.1 119 2-149 131-251 (454)
65 3rfs_A Internalin B, repeat mo 99.7 8.1E-18 2.8E-22 142.6 11.6 204 22-271 37-246 (272)
66 1ziw_A TOLL-like receptor 3; i 99.7 6.9E-17 2.4E-21 153.9 19.1 33 166-199 250-284 (680)
67 1ziw_A TOLL-like receptor 3; i 99.7 2.2E-17 7.5E-22 157.3 15.2 219 1-257 352-594 (680)
68 3g06_A SSPH2 (leucine-rich rep 99.7 9.1E-17 3.1E-21 150.7 18.6 227 3-270 41-283 (622)
69 1p9a_G Platelet glycoprotein I 99.7 3.3E-17 1.1E-21 140.1 13.7 150 2-198 31-183 (290)
70 3oja_A Leucine-rich immune mol 99.7 2.8E-17 9.5E-22 150.6 13.5 208 17-271 21-237 (487)
71 2z62_A TOLL-like receptor 4, v 99.7 2E-17 6.8E-22 140.4 11.6 194 27-259 29-236 (276)
72 2z62_A TOLL-like receptor 4, v 99.7 3E-17 1E-21 139.3 12.1 196 2-234 28-235 (276)
73 1wwl_A Monocyte differentiatio 99.7 6.8E-18 2.3E-22 145.9 7.5 212 4-258 65-307 (312)
74 3rfs_A Internalin B, repeat mo 99.7 6.6E-18 2.3E-22 143.1 6.5 194 25-260 18-218 (272)
75 2o6q_A Variable lymphocyte rec 99.7 9.8E-17 3.4E-21 135.7 13.2 176 2-234 37-216 (270)
76 1h6t_A Internalin B; cell adhe 99.7 8.1E-17 2.8E-21 137.8 11.9 166 23-233 43-210 (291)
77 4g8a_A TOLL-like receptor 4; l 99.7 4.4E-16 1.5E-20 146.7 17.7 90 3-96 53-157 (635)
78 4ay9_X Follicle-stimulating ho 99.7 2.3E-16 7.8E-21 138.5 14.5 218 6-254 13-253 (350)
79 2ast_B S-phase kinase-associat 99.7 3.1E-18 1E-22 149.4 2.4 218 4-257 49-282 (336)
80 4ay9_X Follicle-stimulating ho 99.7 2.9E-16 9.9E-21 137.9 15.0 206 2-232 30-255 (350)
81 2ast_B S-phase kinase-associat 99.7 6.9E-18 2.4E-22 147.1 3.4 227 2-268 70-314 (336)
82 2ca6_A RAN GTPase-activating p 99.7 1.1E-18 3.6E-23 155.4 -2.0 237 1-258 31-314 (386)
83 4glp_A Monocyte differentiatio 99.7 8.1E-17 2.8E-21 139.0 8.1 219 3-258 65-305 (310)
84 1m9s_A Internalin B; cell inva 99.7 2.7E-16 9.4E-21 147.2 11.5 166 23-233 40-207 (605)
85 3m19_A Variable lymphocyte rec 99.7 1.2E-15 4.2E-20 127.6 12.9 56 3-61 15-71 (251)
86 1h6t_A Internalin B; cell adhe 99.6 3.7E-16 1.3E-20 133.6 8.8 164 2-198 46-211 (291)
87 1xeu_A Internalin C; cellular 99.6 3.1E-16 1E-20 132.2 7.7 161 4-198 21-183 (263)
88 1m9s_A Internalin B; cell inva 99.6 8.1E-16 2.8E-20 144.0 10.5 167 1-200 42-210 (605)
89 3cvr_A Invasion plasmid antige 99.6 3.2E-15 1.1E-19 138.6 13.0 175 3-234 60-241 (571)
90 4ezg_A Putative uncharacterize 99.6 1E-15 3.5E-20 123.3 7.7 150 22-233 40-191 (197)
91 1dce_A Protein (RAB geranylger 99.6 2.4E-17 8.1E-22 153.4 -2.6 203 23-253 346-566 (567)
92 2xwt_C Thyrotropin receptor; s 99.6 1.9E-15 6.6E-20 125.4 9.2 195 2-235 31-238 (239)
93 3m19_A Variable lymphocyte rec 99.6 1.1E-14 3.6E-19 121.8 13.7 174 26-258 14-190 (251)
94 3goz_A Leucine-rich repeat-con 99.6 6.4E-17 2.2E-21 142.7 -0.9 236 2-258 22-295 (362)
95 2ca6_A RAN GTPase-activating p 99.6 1.9E-16 6.5E-21 140.8 0.8 206 1-237 59-316 (386)
96 1z7x_W Ribonuclease inhibitor; 99.6 4.9E-17 1.7E-21 147.8 -3.5 185 2-198 28-238 (461)
97 3cvr_A Invasion plasmid antige 99.5 2E-14 6.7E-19 133.4 11.0 192 27-268 60-251 (571)
98 4glp_A Monocyte differentiatio 99.5 5.9E-15 2E-19 127.3 6.2 197 2-234 91-305 (310)
99 1z7x_W Ribonuclease inhibitor; 99.5 2E-16 7E-21 143.6 -4.1 247 1-258 112-409 (461)
100 2o6s_A Variable lymphocyte rec 99.5 4E-14 1.4E-18 114.8 9.6 176 5-247 10-189 (208)
101 4g8a_A TOLL-like receptor 4; l 99.5 1.1E-13 3.8E-18 130.2 14.1 124 117-259 447-579 (635)
102 3goz_A Leucine-rich repeat-con 99.5 3E-15 1E-19 131.9 3.2 227 6-258 2-264 (362)
103 3ogk_B Coronatine-insensitive 99.5 1E-14 3.6E-19 136.5 6.1 40 218-258 483-524 (592)
104 4ezg_A Putative uncharacterize 99.5 1.2E-13 4.2E-18 111.0 10.8 152 44-258 39-192 (197)
105 1xeu_A Internalin C; cellular 99.5 8.3E-14 2.8E-18 117.2 9.2 146 1-180 40-187 (263)
106 2v9t_B SLIT homolog 2 protein 99.5 2.9E-13 1E-17 110.8 10.8 147 5-198 14-163 (220)
107 3ogk_B Coronatine-insensitive 99.4 1.2E-14 4.1E-19 136.1 1.7 127 115-258 293-447 (592)
108 2p1m_B Transport inhibitor res 99.4 1.8E-14 6.1E-19 134.9 1.6 62 186-259 455-518 (594)
109 2o6s_A Variable lymphocyte rec 99.4 5.6E-13 1.9E-17 108.0 10.2 180 29-273 10-191 (208)
110 2xot_A Amphoterin-induced prot 99.4 5.1E-13 1.7E-17 117.6 10.2 147 5-198 21-174 (361)
111 3e6j_A Variable lymphocyte rec 99.4 9E-13 3.1E-17 108.5 11.1 58 134-198 111-170 (229)
112 2p1m_B Transport inhibitor res 99.4 1.5E-14 5.2E-19 135.4 -1.1 60 163-234 455-517 (594)
113 2ell_A Acidic leucine-rich nuc 99.4 4.7E-13 1.6E-17 104.7 6.8 130 23-199 21-159 (168)
114 3sb4_A Hypothetical leucine ri 99.4 3E-12 1E-16 111.2 11.5 215 1-253 48-327 (329)
115 2v70_A SLIT-2, SLIT homolog 2 99.4 2.3E-12 7.8E-17 105.4 9.7 149 5-200 14-166 (220)
116 1dce_A Protein (RAB geranylger 99.4 2.2E-15 7.7E-20 140.1 -9.4 183 45-267 345-552 (567)
117 3e6j_A Variable lymphocyte rec 99.4 3.9E-12 1.3E-16 104.7 10.8 148 28-233 21-169 (229)
118 2v9t_B SLIT homolog 2 protein 99.4 5.9E-12 2E-16 102.9 11.5 148 29-234 14-163 (220)
119 2v70_A SLIT-2, SLIT homolog 2 99.3 8.2E-12 2.8E-16 102.1 11.1 149 28-233 13-163 (220)
120 2xot_A Amphoterin-induced prot 99.3 2E-12 7E-17 113.7 7.0 155 2-198 39-200 (361)
121 2je0_A Acidic leucine-rich nuc 99.3 1.3E-12 4.4E-17 100.1 3.3 124 25-195 16-148 (149)
122 2ell_A Acidic leucine-rich nuc 99.3 1.3E-11 4.4E-16 96.4 8.6 141 47-242 22-165 (168)
123 1a9n_A U2A', U2A'; complex (nu 99.2 9.6E-12 3.3E-16 98.0 5.8 132 22-200 15-153 (176)
124 2wfh_A SLIT homolog 2 protein 99.2 5.1E-11 1.7E-15 95.3 9.4 54 5-61 13-66 (193)
125 1w8a_A SLIT protein; signaling 99.2 4.9E-11 1.7E-15 95.3 9.2 54 5-61 11-66 (192)
126 2je0_A Acidic leucine-rich nuc 99.2 1.2E-11 4.2E-16 94.5 5.1 58 134-198 63-124 (149)
127 2wfh_A SLIT homolog 2 protein 99.1 2.7E-10 9.2E-15 91.1 10.5 120 120-259 15-138 (193)
128 2o6r_A Variable lymphocyte rec 99.1 3.4E-10 1.1E-14 89.1 10.7 124 118-260 10-137 (177)
129 1a9n_A U2A', U2A'; complex (nu 99.1 5.8E-11 2E-15 93.5 5.7 134 44-234 14-151 (176)
130 4b8c_D Glucose-repressible alc 99.1 2.1E-11 7.1E-16 116.7 3.4 111 19-149 217-330 (727)
131 3sb4_A Hypothetical leucine ri 99.1 4.6E-10 1.6E-14 97.3 10.7 99 162-277 224-326 (329)
132 4b8c_D Glucose-repressible alc 99.1 3.8E-11 1.3E-15 114.9 3.7 152 3-202 174-331 (727)
133 1w8a_A SLIT protein; signaling 99.1 6.3E-10 2.2E-14 88.8 10.2 125 118-260 11-139 (192)
134 1ds9_A Outer arm dynein; leuci 99.1 4.7E-12 1.6E-16 101.8 -3.0 72 116-193 94-180 (198)
135 2o6r_A Variable lymphocyte rec 99.0 7.6E-10 2.6E-14 87.0 9.2 61 134-200 75-137 (177)
136 1ds9_A Outer arm dynein; leuci 99.0 1.8E-11 6.2E-16 98.3 -2.3 158 22-230 14-181 (198)
137 4fdw_A Leucine rich hypothetic 99.0 2.9E-08 9.8E-13 88.3 17.4 213 3-265 136-362 (401)
138 4fdw_A Leucine rich hypothetic 98.8 3.9E-07 1.3E-11 81.0 18.1 203 4-254 115-330 (401)
139 2r9u_A Variable lymphocyte rec 98.8 2.7E-08 9.3E-13 77.9 9.2 99 138-258 15-116 (174)
140 3g39_A Variable lymphocyte rec 98.8 2.8E-08 9.5E-13 77.6 9.1 100 137-258 11-113 (170)
141 3g39_A Variable lymphocyte rec 98.7 2.6E-08 8.7E-13 77.8 8.0 100 117-234 11-113 (170)
142 3un9_A NLR family member X1; l 98.7 1.9E-10 6.4E-15 101.5 -4.8 66 132-199 180-251 (372)
143 2r9u_A Variable lymphocyte rec 98.7 3.1E-08 1E-12 77.6 8.3 99 118-234 15-116 (174)
144 3e4g_A ATP synthase subunit S, 98.7 6.9E-09 2.4E-13 80.8 3.5 86 136-237 62-153 (176)
145 3e4g_A ATP synthase subunit S, 98.6 3.1E-08 1E-12 77.1 3.7 88 163-262 60-154 (176)
146 3un9_A NLR family member X1; l 98.6 1.2E-09 4.2E-14 96.2 -5.0 112 116-238 127-253 (372)
147 2ra8_A Uncharacterized protein 98.4 1.8E-07 6.1E-12 81.9 4.4 161 17-199 130-319 (362)
148 2ifg_A High affinity nerve gro 98.4 7.5E-07 2.6E-11 77.4 8.4 89 126-233 20-113 (347)
149 2ra8_A Uncharacterized protein 98.3 2.5E-07 8.4E-12 81.0 3.8 130 115-257 172-317 (362)
150 2ifg_A High affinity nerve gro 98.3 9.3E-07 3.2E-11 76.9 6.4 75 7-96 13-89 (347)
151 4fs7_A Uncharacterized protein 98.2 6.4E-05 2.2E-09 66.5 15.8 38 21-59 157-195 (394)
152 4fs7_A Uncharacterized protein 98.0 6E-05 2.1E-09 66.6 12.5 206 1-255 161-374 (394)
153 1io0_A Tropomodulin; LRR prote 97.9 1.2E-06 4E-11 69.2 -1.4 119 21-149 31-165 (185)
154 3rw6_A Nuclear RNA export fact 97.8 1.4E-05 4.6E-10 66.7 4.5 57 2-60 170-231 (267)
155 1io0_A Tropomodulin; LRR prote 97.7 1.7E-06 5.7E-11 68.4 -2.3 121 43-174 30-161 (185)
156 4gt6_A Cell surface protein; l 97.7 0.0024 8.1E-08 56.3 17.9 98 161-277 262-362 (394)
157 4gt6_A Cell surface protein; l 97.6 0.0016 5.3E-08 57.5 15.2 102 132-256 262-366 (394)
158 3rw6_A Nuclear RNA export fact 97.4 2.4E-05 8.2E-10 65.2 0.4 36 162-198 168-207 (267)
159 4h09_A Hypothetical leucine ri 97.2 0.021 7.1E-07 49.8 16.5 35 219-254 282-317 (379)
160 4h09_A Hypothetical leucine ri 96.7 0.066 2.2E-06 46.5 15.3 101 132-254 237-340 (379)
161 3rfe_A Platelet glycoprotein I 96.1 0.0064 2.2E-07 44.6 4.5 54 5-61 11-67 (130)
162 1pgv_A TMD-1, tropomodulin TMD 94.9 0.0043 1.5E-07 48.9 -0.1 111 26-146 41-168 (197)
163 3rfe_A Platelet glycoprotein I 93.3 0.063 2.2E-06 39.1 3.5 37 2-39 31-68 (130)
164 1pgv_A TMD-1, tropomodulin TMD 92.1 0.022 7.7E-07 44.8 -0.5 119 45-174 37-167 (197)
165 2lz0_A Uncharacterized protein 36.0 51 0.0018 22.1 4.3 34 161-196 17-52 (100)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=2.3e-24 Score=187.92 Aligned_cols=236 Identities=19% Similarity=0.232 Sum_probs=172.6
Q ss_pred CcccEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeeccccccccccc
Q 044279 2 HALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLA 81 (305)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~ 81 (305)
+++++|++++| .++.+|..++++++|++|++++|.+..+|..++.+++|++|++++|.+ ..++.
T Consensus 81 ~~l~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l---------------~~lp~ 144 (328)
T 4fcg_A 81 PGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPL---------------RALPA 144 (328)
T ss_dssp TTCCEEEEESS-CCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCC---------------CCCCG
T ss_pred cceeEEEccCC-CchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCcc---------------ccCcH
Confidence 56888899988 788888888888999999999888888888888899999999988874 35677
Q ss_pred cccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCccccccCCCccEEEEeceecceecccccCCCccc
Q 044279 82 GLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTY 161 (305)
Q Consensus 82 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~ 161 (305)
.+..+++|+.|++++|......... +....+. .....+++|+.|++++|.++.++..+ .
T Consensus 145 ~l~~l~~L~~L~L~~n~~~~~~p~~----------~~~~~~~-----~~~~~l~~L~~L~L~~n~l~~lp~~l------~ 203 (328)
T 4fcg_A 145 SIASLNRLRELSIRACPELTELPEP----------LASTDAS-----GEHQGLVNLQSLRLEWTGIRSLPASI------A 203 (328)
T ss_dssp GGGGCTTCCEEEEEEETTCCCCCSC----------SEEEC-C-----CCEEESTTCCEEEEEEECCCCCCGGG------G
T ss_pred HHhcCcCCCEEECCCCCCccccChh----------Hhhccch-----hhhccCCCCCEEECcCCCcCcchHhh------c
Confidence 7888888888888884221111111 1110000 00034788888888888877776554 6
Q ss_pred CCCccceEeeeCCCCCccCC-cCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCceec
Q 044279 162 CFRNLRHLSVKDCHFMTDLK-WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSIC 240 (305)
Q Consensus 162 ~~~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 240 (305)
.+++|++|++++| .++.++ .+..+++|++|++++|.....++. .++.+++|+.|++++|...+.++
T Consensus 204 ~l~~L~~L~L~~N-~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~------------~~~~l~~L~~L~L~~n~~~~~~p 270 (328)
T 4fcg_A 204 NLQNLKSLKIRNS-PLSALGPAIHHLPKLEELDLRGCTALRNYPP------------IFGGRAPLKRLILKDCSNLLTLP 270 (328)
T ss_dssp GCTTCCEEEEESS-CCCCCCGGGGGCTTCCEEECTTCTTCCBCCC------------CTTCCCCCCEEECTTCTTCCBCC
T ss_pred CCCCCCEEEccCC-CCCcCchhhccCCCCCEEECcCCcchhhhHH------------HhcCCCCCCEEECCCCCchhhcc
Confidence 7888899999888 555554 566788899999988887666554 67788889999999887777888
Q ss_pred CCCCCCCCCceEEeeCCCCCCCCCCCCccccCcCceEeCCcccccccc
Q 044279 241 CRAVPLPSLKTISVYDCPGLRKLPLNSGSAKNSLNAIRGSREWWDQLE 288 (305)
Q Consensus 241 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~i~~~~~~~~~l~ 288 (305)
.....+++|+.|++++|+.++.+|..+..+++ ...+.........++
T Consensus 271 ~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~-L~~l~l~~~~~~~l~ 317 (328)
T 4fcg_A 271 LDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA-NCIILVPPHLQAQLD 317 (328)
T ss_dssp TTGGGCTTCCEEECTTCTTCCCCCGGGGGSCT-TCEEECCGGGSCC--
T ss_pred hhhhcCCCCCEEeCCCCCchhhccHHHhhccC-ceEEeCCHHHHHHHh
Confidence 77778888999999888888888888887753 344444444444443
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=3.5e-22 Score=174.11 Aligned_cols=193 Identities=19% Similarity=0.238 Sum_probs=150.1
Q ss_pred ccccccccccCCccccCCcccccccccceeeccccceeeceEEEeeccccccccccccccCccCccceeEEEeecCcccc
Q 044279 25 LINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAF 104 (305)
Q Consensus 25 l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 104 (305)
..+++.|+++++++..+|..++.+++|++|++++|.+ ..++..+..+++|+.|++++ +....+
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l---------------~~lp~~~~~l~~L~~L~Ls~--n~l~~l 142 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGL---------------MELPDTMQQFAGLETLTLAR--NPLRAL 142 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCC---------------CCCCSCGGGGTTCSEEEEES--CCCCCC
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCc---------------cchhHHHhccCCCCEEECCC--CccccC
Confidence 4789999999999999999999999999999999984 36677888899999999888 332222
Q ss_pred cccccCCCccccceEEEEEcCCCccccccCCCccEEEEecee-cceecccccC---CCcccCCCccceEeeeCCCCCccC
Q 044279 105 CRFQSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCS-LESINIYFGD---QGRTYCFRNLRHLSVKDCHFMTDL 180 (305)
Q Consensus 105 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~---~~~~~~~~~L~~L~L~~~~~l~~~ 180 (305)
+.. + ..+++|+.|++++|. +..++..+.. .+.+..+++|++|++++| .++.+
T Consensus 143 p~~---------l--------------~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~l 198 (328)
T 4fcg_A 143 PAS---------I--------------ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSL 198 (328)
T ss_dssp CGG---------G--------------GGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCC
T ss_pred cHH---------H--------------hcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcc
Confidence 110 0 346677777777766 5555543310 000245899999999999 66676
Q ss_pred C-cCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCceecCCCCCCCCCceEEeeCCCC
Q 044279 181 K-WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCPG 259 (305)
Q Consensus 181 ~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~ 259 (305)
| .+..+++|++|++++|.. ..++. .++.+++|++|++++|...+.++.....+++|+.|++++|..
T Consensus 199 p~~l~~l~~L~~L~L~~N~l-~~l~~------------~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~ 265 (328)
T 4fcg_A 199 PASIANLQNLKSLKIRNSPL-SALGP------------AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSN 265 (328)
T ss_dssp CGGGGGCTTCCEEEEESSCC-CCCCG------------GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTT
T ss_pred hHhhcCCCCCCEEEccCCCC-CcCch------------hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCc
Confidence 5 577899999999999764 34444 678899999999999977888888888999999999999999
Q ss_pred CCCCCCCCcccc
Q 044279 260 LRKLPLNSGSAK 271 (305)
Q Consensus 260 l~~~~~~~~~~~ 271 (305)
.+.+|..+..++
T Consensus 266 ~~~~p~~~~~l~ 277 (328)
T 4fcg_A 266 LLTLPLDIHRLT 277 (328)
T ss_dssp CCBCCTTGGGCT
T ss_pred hhhcchhhhcCC
Confidence 999998887764
No 3
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.87 E-value=1.5e-22 Score=175.33 Aligned_cols=224 Identities=15% Similarity=0.152 Sum_probs=159.7
Q ss_pred CcccEEeCCCCCCcc---ccchhhhcccccccccccC-Cccc-cCCcccccccccceeeccccceeeceEEEeecccccc
Q 044279 2 HALAVLDLSYNFDLV---ELPEAIGKLINLCHLNLSN-TKIR-ELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCA 76 (305)
Q Consensus 2 ~~L~~L~l~~~~~~~---~lp~~~~~l~~L~~L~l~~-~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~ 76 (305)
.+++.|+++++ .+. .+|..++++++|++|++++ +++. .+|..++.+++|++|++++|.+ .
T Consensus 50 ~~l~~L~L~~~-~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l--------------~ 114 (313)
T 1ogq_A 50 YRVNNLDLSGL-NLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNV--------------S 114 (313)
T ss_dssp CCEEEEEEECC-CCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECC--------------E
T ss_pred ceEEEEECCCC-CccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCee--------------C
Confidence 46888999999 665 5788899999999999985 7666 7888899999999999999875 2
Q ss_pred ccccccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCc-ccc---ccCC-CccEEEEeceeccee-
Q 044279 77 TTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFS-SLD---FRMD-HLETLEIVDCSLESI- 150 (305)
Q Consensus 77 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~-~~~---~~~~-~L~~L~l~~~~l~~~- 150 (305)
...+..+..+++|+.|+++.+.........+... ++|++|+++.+.++ .++ ..++ .|+.|++++|.++..
T Consensus 115 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l----~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~ 190 (313)
T 1ogq_A 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL----PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI 190 (313)
T ss_dssp EECCGGGGGCTTCCEEECCSSEEESCCCGGGGGC----TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEEC
T ss_pred CcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcC----CCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccC
Confidence 3566778888999999888743222222233333 34888888866665 444 4555 889999998886643
Q ss_pred cccccCCCcccCCCccceEeeeCCCCCccC-C-cCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCcccee
Q 044279 151 NIYFGDQGRTYCFRNLRHLSVKDCHFMTDL-K-WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVI 228 (305)
Q Consensus 151 ~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~-~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 228 (305)
+..+ ..++ |+.|++++| .++.. + .+..+++|+.|++++|..... ++ .+..+++|++|
T Consensus 191 ~~~~------~~l~-L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~------------~~~~l~~L~~L 249 (313)
T 1ogq_A 191 PPTF------ANLN-LAFVDLSRN-MLEGDASVLFGSDKNTQKIHLAKNSLAFD-LG------------KVGLSKNLNGL 249 (313)
T ss_dssp CGGG------GGCC-CSEEECCSS-EEEECCGGGCCTTSCCSEEECCSSEECCB-GG------------GCCCCTTCCEE
T ss_pred ChHH------hCCc-ccEEECcCC-cccCcCCHHHhcCCCCCEEECCCCceeee-cC------------cccccCCCCEE
Confidence 3333 4454 889999888 55433 2 567788899999988764322 22 24567888888
Q ss_pred eccCcccCc-eecCCCCCCCCCceEEeeCCCCCCCCCCC
Q 044279 229 DLQHLPSLT-SICCRAVPLPSLKTISVYDCPGLRKLPLN 266 (305)
Q Consensus 229 ~l~~~~~l~-~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 266 (305)
++++| .++ .++.....+++|+.|++++|..-..+|..
T Consensus 250 ~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 250 DLRNN-RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp ECCSS-CCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred ECcCC-cccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 88888 454 56666667888888888887544466654
No 4
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.87 E-value=4e-21 Score=171.27 Aligned_cols=80 Identities=18% Similarity=0.262 Sum_probs=54.3
Q ss_pred CCcccEEeCCCCCCccccch-hhhcccccccccccCCccccCCcc-cccccccceeeccccceeeceEEEeecccccccc
Q 044279 1 MHALAVLDLSYNFDLVELPE-AIGKLINLCHLNLSNTKIRELPAG-IKYLKNLKILRLDVFSWFSTELVALHHNFCCATT 78 (305)
Q Consensus 1 l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~ 78 (305)
+++|++|++++| .+..++. .+..+++|++|++++|++..+|.. ++.+++|++|++++|.+. .
T Consensus 68 l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~---------------~ 131 (390)
T 3o6n_A 68 FRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS---------------S 131 (390)
T ss_dssp CCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC---------------C
T ss_pred cccCcEEECCCC-cccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC---------------c
Confidence 467888888888 6676654 577788888888888877766543 677788888888877642 3
Q ss_pred cccc-ccCccCccceeEEE
Q 044279 79 VLAG-LESLENIHDISITL 96 (305)
Q Consensus 79 ~~~~-l~~l~~L~~L~l~~ 96 (305)
++.. +..+++|+.|++++
T Consensus 132 l~~~~~~~l~~L~~L~L~~ 150 (390)
T 3o6n_A 132 LPRGIFHNTPKLTTLSMSN 150 (390)
T ss_dssp CCTTTTTTCTTCCEEECCS
T ss_pred CCHHHhcCCCCCcEEECCC
Confidence 3333 35566666666655
No 5
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.86 E-value=1.4e-20 Score=172.17 Aligned_cols=225 Identities=22% Similarity=0.243 Sum_probs=116.0
Q ss_pred CcccEEeCCCCCCcccc-chhhhcccccccccccCCccccCCcc-cccccccceeeccccceeeceEEEeeccccccccc
Q 044279 2 HALAVLDLSYNFDLVEL-PEAIGKLINLCHLNLSNTKIRELPAG-IKYLKNLKILRLDVFSWFSTELVALHHNFCCATTV 79 (305)
Q Consensus 2 ~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~ 79 (305)
++|++|++++| .++.+ |..+.++++|++|++++|++..+|.. +..+++|++|++++|.+. ...
T Consensus 56 ~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~--------------~~~ 120 (477)
T 2id5_A 56 PHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV--------------ILL 120 (477)
T ss_dssp TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCC--------------EEC
T ss_pred CCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccc--------------cCC
Confidence 44555555555 44443 33455555555555555555555443 445555555555555431 222
Q ss_pred cccccCccCccceeEEEeecCcccc--cccccCCCccccceEEEEEcCCCcccc----ccCCCccEEEEeceecceeccc
Q 044279 80 LAGLESLENIHDISITLCFVDTHAF--CRFQSSPKLQSCVKRLTVASPWFSSLD----FRMDHLETLEIVDCSLESINIY 153 (305)
Q Consensus 80 ~~~l~~l~~L~~L~l~~~~~~~~~~--~~l~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~L~~L~l~~~~l~~~~~~ 153 (305)
+..+..+++|+.|++.. +....+ ..+... .+|+.|+++.+.++.++ ..+++|+.|++++|.+..++..
T Consensus 121 ~~~~~~l~~L~~L~l~~--n~l~~~~~~~~~~l----~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~ 194 (477)
T 2id5_A 121 DYMFQDLYNLKSLEVGD--NDLVYISHRAFSGL----NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDY 194 (477)
T ss_dssp TTTTTTCTTCCEEEECC--TTCCEECTTSSTTC----TTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTT
T ss_pred hhHccccccCCEEECCC--CccceeChhhccCC----CCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChh
Confidence 34455666666666655 222111 112222 23666666655555444 4566666666666665555433
Q ss_pred ccCCCcccCCCccceEeeeCCCCC-----------------------ccCC--cCCCCCCCCEEEEeccccccccccccC
Q 044279 154 FGDQGRTYCFRNLRHLSVKDCHFM-----------------------TDLK--WIRCAPNLQFLYVSDCQVLSEIIGTYE 208 (305)
Q Consensus 154 ~~~~~~~~~~~~L~~L~L~~~~~l-----------------------~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~ 208 (305)
.. ..+++|+.|++++|..+ +.++ .+..+++|++|++++|. +..++.
T Consensus 195 ~~-----~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~--- 265 (477)
T 2id5_A 195 SF-----KRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEG--- 265 (477)
T ss_dssp CS-----CSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC-CCEECT---
T ss_pred hc-----ccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCc-CCccCh---
Confidence 21 34455555555544333 3332 23344555555555543 222222
Q ss_pred CCCCccccccccccCccceeeccCcccCcee-cCCCCCCCCCceEEeeCCCCCCCCCCC
Q 044279 209 SPGTSEIEESHHFLSNLMVIDLQHLPSLTSI-CCRAVPLPSLKTISVYDCPGLRKLPLN 266 (305)
Q Consensus 209 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~c~~l~~~~~~ 266 (305)
..+..+++|+.|+++++ .++.+ +.....+++|+.|++++| .++.++..
T Consensus 266 --------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~ 314 (477)
T 2id5_A 266 --------SMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEES 314 (477)
T ss_dssp --------TSCTTCTTCCEEECCSS-CCSEECTTTBTTCTTCCEEECCSS-CCSCCCGG
T ss_pred --------hhccccccCCEEECCCC-ccceECHHHhcCcccCCEEECCCC-cCceeCHh
Confidence 24556777777777777 55554 334456788888888766 55655543
No 6
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=1.5e-20 Score=176.60 Aligned_cols=60 Identities=20% Similarity=0.265 Sum_probs=38.4
Q ss_pred CCcccEEeCCCCCCccccch-hhhcccccccccccCCccccCCcc-cccccccceeeccccce
Q 044279 1 MHALAVLDLSYNFDLVELPE-AIGKLINLCHLNLSNTKIRELPAG-IKYLKNLKILRLDVFSW 61 (305)
Q Consensus 1 l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~ 61 (305)
+++|++|++++| .+..++. .++.+++|++|++++|.+..+|.. ++.+++|++|++++|.+
T Consensus 74 l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 135 (597)
T 3oja_B 74 FRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 135 (597)
T ss_dssp CCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCC
Confidence 356677777776 5565543 566667777777777666655543 56667777777776653
No 7
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.85 E-value=1.8e-20 Score=163.34 Aligned_cols=217 Identities=18% Similarity=0.189 Sum_probs=124.9
Q ss_pred cccEEeCCCCCCccccch-hhhcccccccccccCCccccC-CcccccccccceeeccccceeeceEEEeecccccccccc
Q 044279 3 ALAVLDLSYNFDLVELPE-AIGKLINLCHLNLSNTKIREL-PAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVL 80 (305)
Q Consensus 3 ~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~ 80 (305)
++++|++++| .++.++. .++++++|++|++++|++..+ |..++.+++|++|++++|.+ ..++
T Consensus 53 ~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l---------------~~l~ 116 (330)
T 1xku_A 53 DTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL---------------KELP 116 (330)
T ss_dssp TCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCC---------------SBCC
T ss_pred CCeEEECCCC-cCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcC---------------CccC
Confidence 4566666666 5555543 456666666666666666544 44566666666666666653 1222
Q ss_pred ccccCccCccceeEEEeecCccccc--ccccCCCccccceEEEEEcCCCccc--c----ccCCCccEEEEeceecceecc
Q 044279 81 AGLESLENIHDISITLCFVDTHAFC--RFQSSPKLQSCVKRLTVASPWFSSL--D----FRMDHLETLEIVDCSLESINI 152 (305)
Q Consensus 81 ~~l~~l~~L~~L~l~~~~~~~~~~~--~l~~~~~~~~~L~~L~l~~~~~~~~--~----~~~~~L~~L~l~~~~l~~~~~ 152 (305)
..+. ++|+.|+++. +...... .+... ++|+.|+++.+.+... . ..+++|+.|++++|.++.++.
T Consensus 117 ~~~~--~~L~~L~l~~--n~l~~~~~~~~~~l----~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~ 188 (330)
T 1xku_A 117 EKMP--KTLQELRVHE--NEITKVRKSVFNGL----NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ 188 (330)
T ss_dssp SSCC--TTCCEEECCS--SCCCBBCHHHHTTC----TTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS
T ss_pred hhhc--ccccEEECCC--CcccccCHhHhcCC----ccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCc
Confidence 2222 4566666555 2221111 12222 2366666664444321 1 456667777776666665553
Q ss_pred cccCCCcccCCCccceEeeeCCCCCccC--CcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeec
Q 044279 153 YFGDQGRTYCFRNLRHLSVKDCHFMTDL--KWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDL 230 (305)
Q Consensus 153 ~~~~~~~~~~~~~L~~L~L~~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 230 (305)
. ..++|++|++++| .++.+ ..+..+++|++|++++|.. ..+++ ..+..+++|+.|++
T Consensus 189 ~--------~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~-----------~~~~~l~~L~~L~L 247 (330)
T 1xku_A 189 G--------LPPSLTELHLDGN-KITKVDAASLKGLNNLAKLGLSFNSI-SAVDN-----------GSLANTPHLRELHL 247 (330)
T ss_dssp S--------CCTTCSEEECTTS-CCCEECTGGGTTCTTCCEEECCSSCC-CEECT-----------TTGGGSTTCCEEEC
T ss_pred c--------ccccCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCCcC-ceeCh-----------hhccCCCCCCEEEC
Confidence 2 2366777777777 45444 2466677777777777553 33322 24567788888888
Q ss_pred cCcccCceecCCCCCCCCCceEEeeCCCCCCCCCCC
Q 044279 231 QHLPSLTSICCRAVPLPSLKTISVYDCPGLRKLPLN 266 (305)
Q Consensus 231 ~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 266 (305)
++| .++.++.....+++|++|++++| .++.++..
T Consensus 248 ~~N-~l~~lp~~l~~l~~L~~L~l~~N-~i~~~~~~ 281 (330)
T 1xku_A 248 NNN-KLVKVPGGLADHKYIQVVYLHNN-NISAIGSN 281 (330)
T ss_dssp CSS-CCSSCCTTTTTCSSCCEEECCSS-CCCCCCTT
T ss_pred CCC-cCccCChhhccCCCcCEEECCCC-cCCccChh
Confidence 888 67777776777888888888766 45555443
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.85 E-value=2.1e-20 Score=176.82 Aligned_cols=233 Identities=15% Similarity=0.111 Sum_probs=146.8
Q ss_pred CcccEEeCCCCCCccccch--hhhcccccccccccCCccc-cCCcccccccccceeeccccceeeceEEEeecccccccc
Q 044279 2 HALAVLDLSYNFDLVELPE--AIGKLINLCHLNLSNTKIR-ELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATT 78 (305)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~ 78 (305)
++|++|++++| .++.+|. .++++++|++|++++|++. .+| .++.+++|++|++++|.+. .
T Consensus 305 ~~L~~L~L~~n-~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~---------------~ 367 (636)
T 4eco_A 305 EKIQIIYIGYN-NLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT---------------E 367 (636)
T ss_dssp GTCCEEECCSS-CCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE---------------E
T ss_pred CCCCEEECCCC-cCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc---------------c
Confidence 68899999999 7778888 7889999999999998888 888 8888889999999888743 4
Q ss_pred ccccccCccC-ccceeEEEeecCcccccccccCCC------------------------------ccccceEEEEEcCCC
Q 044279 79 VLAGLESLEN-IHDISITLCFVDTHAFCRFQSSPK------------------------------LQSCVKRLTVASPWF 127 (305)
Q Consensus 79 ~~~~l~~l~~-L~~L~l~~~~~~~~~~~~l~~~~~------------------------------~~~~L~~L~l~~~~~ 127 (305)
++..+..+++ |+.|++++ +....++....... ...+|+.|+++.+.+
T Consensus 368 lp~~l~~l~~~L~~L~Ls~--N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l 445 (636)
T 4eco_A 368 IPANFCGFTEQVENLSFAH--NKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQI 445 (636)
T ss_dssp CCTTSEEECTTCCEEECCS--SCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCC
T ss_pred ccHhhhhhcccCcEEEccC--CcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCcc
Confidence 4445555555 66665555 22222221111000 112366666665555
Q ss_pred cccc----ccCCCccEEEEeceecceecccccCCCc--ccCCCccceEeeeCCCCCccCC-cCC--CCCCCCEEEEeccc
Q 044279 128 SSLD----FRMDHLETLEIVDCSLESINIYFGDQGR--TYCFRNLRHLSVKDCHFMTDLK-WIR--CAPNLQFLYVSDCQ 198 (305)
Q Consensus 128 ~~~~----~~~~~L~~L~l~~~~l~~~~~~~~~~~~--~~~~~~L~~L~L~~~~~l~~~~-~~~--~~~~L~~L~l~~~~ 198 (305)
+.++ ..+++|+.|++++|.++.++........ ...+++|++|++++| .++.++ .+. .+++|++|++++|.
T Consensus 446 ~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~l~~L~~L~Ls~N~ 524 (636)
T 4eco_A 446 SKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDDFRATTLPYLVGIDLSYNS 524 (636)
T ss_dssp CSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSS-CCCBCCGGGSTTTCTTCCEEECCSSC
T ss_pred CcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCC-cCCccChhhhhccCCCcCEEECCCCC
Confidence 5554 3456677777777666655544320000 011226777777777 555554 333 67777777777765
Q ss_pred cccccccccCCCCCccccccccccCccceeeccC------cccCceecCCCCCCCCCceEEeeCCCCCCCCCCCCc
Q 044279 199 VLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQH------LPSLTSICCRAVPLPSLKTISVYDCPGLRKLPLNSG 268 (305)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~ 268 (305)
.. .++. .+..+++|+.|++++ +...+.++.....+++|+.|++++|. ++.+|..+.
T Consensus 525 l~-~ip~------------~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~~~ 586 (636)
T 4eco_A 525 FS-KFPT------------QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND-IRKVNEKIT 586 (636)
T ss_dssp CS-SCCC------------GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSCCC
T ss_pred CC-CcCh------------hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc-CCccCHhHh
Confidence 33 2333 666788888888854 32344566666678888888887774 477777644
No 9
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.84 E-value=1.1e-20 Score=163.85 Aligned_cols=212 Identities=18% Similarity=0.110 Sum_probs=161.3
Q ss_pred CcccEEeCCCCCCccccc-hhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeecccccccccc
Q 044279 2 HALAVLDLSYNFDLVELP-EAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVL 80 (305)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~ 80 (305)
++|++|++++| .++.++ ..+.++++|++|++++|++..++. +..+++|++|++++|.+..
T Consensus 34 ~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~----------------- 94 (317)
T 3o53_A 34 WNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQE----------------- 94 (317)
T ss_dssp GGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEE-----------------
T ss_pred CCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccc-----------------
Confidence 57889999998 777765 568889999999999998876654 8888999999999887532
Q ss_pred ccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc----ccCCCccEEEEeceecceecccccC
Q 044279 81 AGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD----FRMDHLETLEIVDCSLESINIYFGD 156 (305)
Q Consensus 81 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~L~~L~l~~~~l~~~~~~~~~ 156 (305)
+...++|+.|++++ +....... . ..++|+.|+++.+.++.++ ..+++|+.|++++|.++.++....
T Consensus 95 --l~~~~~L~~L~l~~--n~l~~~~~---~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~- 164 (317)
T 3o53_A 95 --LLVGPSIETLHAAN--NNISRVSC---S--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL- 164 (317)
T ss_dssp --EEECTTCCEEECCS--SCCSEEEE---C--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGG-
T ss_pred --ccCCCCcCEEECCC--CccCCcCc---c--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHH-
Confidence 22337888888877 33322221 1 1244999999977776654 567899999999998777654432
Q ss_pred CCcccCCCccceEeeeCCCCCccCCcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccC
Q 044279 157 QGRTYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSL 236 (305)
Q Consensus 157 ~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 236 (305)
...+++|++|++++| .++.++....+++|++|++++|. +..+++ .+..+++|+.|++++| .+
T Consensus 165 ---~~~l~~L~~L~L~~N-~l~~~~~~~~l~~L~~L~Ls~N~-l~~l~~------------~~~~l~~L~~L~L~~N-~l 226 (317)
T 3o53_A 165 ---AASSDTLEHLNLQYN-FIYDVKGQVVFAKLKTLDLSSNK-LAFMGP------------EFQSAAGVTWISLRNN-KL 226 (317)
T ss_dssp ---GGGTTTCCEEECTTS-CCCEEECCCCCTTCCEEECCSSC-CCEECG------------GGGGGTTCSEEECTTS-CC
T ss_pred ---hhccCcCCEEECCCC-cCcccccccccccCCEEECCCCc-CCcchh------------hhcccCcccEEECcCC-cc
Confidence 246789999999998 77777666678999999999965 445554 4678899999999998 88
Q ss_pred ceecCCCCCCCCCceEEeeCCCCC
Q 044279 237 TSICCRAVPLPSLKTISVYDCPGL 260 (305)
Q Consensus 237 ~~~~~~~~~~~~L~~L~l~~c~~l 260 (305)
+.++.....+++|+.|++++++..
T Consensus 227 ~~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 227 VLIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CEECTTCCCCTTCCEEECTTCCCB
T ss_pred cchhhHhhcCCCCCEEEccCCCcc
Confidence 888887778899999999888654
No 10
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.84 E-value=6.4e-20 Score=166.60 Aligned_cols=113 Identities=17% Similarity=0.190 Sum_probs=75.1
Q ss_pred CCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCC--cCCCCCCCCEEEEeccccccccccccCCCCC
Q 044279 135 DHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK--WIRCAPNLQFLYVSDCQVLSEIIGTYESPGT 212 (305)
Q Consensus 135 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 212 (305)
++|+.|++++|.+++..... +..+++|++|++++| .++.++ .+..+++|++|++++|.. ..+++
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~------- 340 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSV-----FSHFTDLEQLTLAQN-EINKIDDNAFWGLTHLLKLNLSQNFL-GSIDS------- 340 (455)
T ss_dssp SCCCEEECCSSCCCEECTTT-----TTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCC-CEECG-------
T ss_pred cCceEEEecCccccccchhh-----cccCCCCCEEECCCC-cccccChhHhcCcccCCEEECCCCcc-CCcCh-------
Confidence 34555555555544443332 256677777787777 555442 566777888888887653 33332
Q ss_pred ccccccccccCccceeeccCcccCcee-cCCCCCCCCCceEEeeCCCCCCCCCCCC
Q 044279 213 SEIEESHHFLSNLMVIDLQHLPSLTSI-CCRAVPLPSLKTISVYDCPGLRKLPLNS 267 (305)
Q Consensus 213 ~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 267 (305)
..+..+++|++|++++| .++.+ +.....+++|++|++++| .++.+|...
T Consensus 341 ----~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~ 390 (455)
T 3v47_A 341 ----RMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTN-QLKSVPDGI 390 (455)
T ss_dssp ----GGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTT
T ss_pred ----hHhcCcccCCEEECCCC-cccccChhhccccccccEEECCCC-ccccCCHhH
Confidence 35678899999999998 66666 555668899999999876 667776643
No 11
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.84 E-value=3.5e-20 Score=162.53 Aligned_cols=221 Identities=16% Similarity=0.235 Sum_probs=113.3
Q ss_pred CCcccEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEE----------Eee
Q 044279 1 MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELV----------ALH 70 (305)
Q Consensus 1 l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~----------l~~ 70 (305)
+++|++|++++| .++.++. +.++++|++|++++|.+..+| .++.+++|++|++++|.+.....+ +.+
T Consensus 65 ~~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~ 141 (347)
T 4fmz_A 65 LTNLEYLNLNGN-QITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGA 141 (347)
T ss_dssp CTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCCCCGGGTTCTTCCEEECTT
T ss_pred cCCccEEEccCC-ccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCcccCchhhccCCceeEEECCC
Confidence 568888899888 7777776 788888888888888888775 578888888888888875321000 000
Q ss_pred ccccccccccccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc--ccCCCccEEEEeceecc
Q 044279 71 HNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD--FRMDHLETLEIVDCSLE 148 (305)
Q Consensus 71 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~L~~L~l~~~~l~ 148 (305)
+. ....+..+..+++|+.|++.. +.......+... ++|++|+++.+.+..++ ..+++|+.+++++|.++
T Consensus 142 n~---~~~~~~~~~~l~~L~~L~l~~--~~~~~~~~~~~l----~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~ 212 (347)
T 4fmz_A 142 NH---NLSDLSPLSNMTGLNYLTVTE--SKVKDVTPIANL----TDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQIT 212 (347)
T ss_dssp CT---TCCCCGGGTTCTTCCEEECCS--SCCCCCGGGGGC----TTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CC---CcccccchhhCCCCcEEEecC--CCcCCchhhccC----CCCCEEEccCCcccccccccCCCccceeecccCCCC
Confidence 00 111112233334444444433 111111111111 22444444433333333 33444444444444433
Q ss_pred eecccccCCCcccCCCccceEeeeCCCCCccCCcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCcccee
Q 044279 149 SINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVI 228 (305)
Q Consensus 149 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 228 (305)
+.+. ...+++|++|++++| .++.++.+..+++|++|++++|.. ..++ .+..+++|++|
T Consensus 213 ~~~~-------~~~~~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~l-~~~~-------------~~~~l~~L~~L 270 (347)
T 4fmz_A 213 DITP-------VANMTRLNSLKIGNN-KITDLSPLANLSQLTWLEIGTNQI-SDIN-------------AVKDLTKLKML 270 (347)
T ss_dssp CCGG-------GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSCC-CCCG-------------GGTTCTTCCEE
T ss_pred CCch-------hhcCCcCCEEEccCC-ccCCCcchhcCCCCCEEECCCCcc-CCCh-------------hHhcCCCcCEE
Confidence 3322 134555666666655 444444455556666666665432 2211 23445555555
Q ss_pred eccCcccCceecCCCCCCCCCceEEeeCC
Q 044279 229 DLQHLPSLTSICCRAVPLPSLKTISVYDC 257 (305)
Q Consensus 229 ~l~~~~~l~~~~~~~~~~~~L~~L~l~~c 257 (305)
++++| .++.++. ...+++|+.|++++|
T Consensus 271 ~l~~n-~l~~~~~-~~~l~~L~~L~L~~n 297 (347)
T 4fmz_A 271 NVGSN-QISDISV-LNNLSQLNSLFLNNN 297 (347)
T ss_dssp ECCSS-CCCCCGG-GGGCTTCSEEECCSS
T ss_pred EccCC-ccCCChh-hcCCCCCCEEECcCC
Confidence 55555 4444432 334555555555555
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.84 E-value=5.1e-20 Score=178.34 Aligned_cols=232 Identities=16% Similarity=0.124 Sum_probs=126.3
Q ss_pred cccEEeCCCCCCccccch--hhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeecccccccccc
Q 044279 3 ALAVLDLSYNFDLVELPE--AIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVL 80 (305)
Q Consensus 3 ~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~ 80 (305)
+|++|++++| .+..+|. .++++++|++|++++|++..+| .++.+++|++|++++|.+ ..++
T Consensus 549 ~L~~L~Ls~N-~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l---------------~~lp 611 (876)
T 4ecn_A 549 KIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQI---------------EEIP 611 (876)
T ss_dssp TCCEEECCSS-CCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCC---------------SCCC
T ss_pred CccEEEeeCC-cCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCcc---------------ccch
Confidence 4445555554 4444444 4455555555555555444444 444455555555555442 2555
Q ss_pred ccccCccC-ccceeEEEeecCcccccccccCCC----------------------------ccccceEEEEEcCCCcccc
Q 044279 81 AGLESLEN-IHDISITLCFVDTHAFCRFQSSPK----------------------------LQSCVKRLTVASPWFSSLD 131 (305)
Q Consensus 81 ~~l~~l~~-L~~L~l~~~~~~~~~~~~l~~~~~----------------------------~~~~L~~L~l~~~~~~~~~ 131 (305)
..+..+++ |+.|+++. +....++....... ...+|+.|+++.|.+..++
T Consensus 612 ~~l~~l~~~L~~L~Ls~--N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp 689 (876)
T 4ecn_A 612 EDFCAFTDQVEGLGFSH--NKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFP 689 (876)
T ss_dssp TTSCEECTTCCEEECCS--SCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCC
T ss_pred HHHhhccccCCEEECcC--CCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccC
Confidence 66777776 77777776 33222222111110 0013555666555555444
Q ss_pred ----ccCCCccEEEEeceecceecccccCCCc--ccCCCccceEeeeCCCCCccCC-cCC--CCCCCCEEEEeccccccc
Q 044279 132 ----FRMDHLETLEIVDCSLESINIYFGDQGR--TYCFRNLRHLSVKDCHFMTDLK-WIR--CAPNLQFLYVSDCQVLSE 202 (305)
Q Consensus 132 ----~~~~~L~~L~l~~~~l~~~~~~~~~~~~--~~~~~~L~~L~L~~~~~l~~~~-~~~--~~~~L~~L~l~~~~~~~~ 202 (305)
..+++|+.|++++|.++.++........ ..++++|+.|+|++| .++.+| .+. .+++|+.|++++|.. ..
T Consensus 690 ~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N~L-~~ 767 (876)
T 4ecn_A 690 TELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYNCF-SS 767 (876)
T ss_dssp HHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGGGSTTTCTTCCEEECCSSCC-SS
T ss_pred HHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCC-CCccchHHhhhccCCCcCEEEeCCCCC-Cc
Confidence 3456666677666666655544321000 012236777777776 555554 333 567777777777553 22
Q ss_pred cccccCCCCCccccccccccCccceeeccC------cccCceecCCCCCCCCCceEEeeCCCCCCCCCCCCc
Q 044279 203 IIGTYESPGTSEIEESHHFLSNLMVIDLQH------LPSLTSICCRAVPLPSLKTISVYDCPGLRKLPLNSG 268 (305)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~ 268 (305)
++ ..+..+++|+.|+|++ |.....++.....+++|+.|++++|.. +.+|..+.
T Consensus 768 lp------------~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~ 826 (876)
T 4ecn_A 768 FP------------TQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT 826 (876)
T ss_dssp CC------------CGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred cc------------hhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc
Confidence 33 3566788888888876 322345666666788888888877744 77777654
No 13
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.84 E-value=1.6e-20 Score=161.85 Aligned_cols=218 Identities=20% Similarity=0.210 Sum_probs=129.0
Q ss_pred CcccEEeCCCCCCccccchh-hhcccccccccccCCccccC---CcccccccccceeeccccceeeceEEEeeccccccc
Q 044279 2 HALAVLDLSYNFDLVELPEA-IGKLINLCHLNLSNTKIREL---PAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCAT 77 (305)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~l~~l---p~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~ 77 (305)
++|++|++++| .++.+|.. +.++++|++|++++|++..+ |..+..+++|++|++++|.+ .
T Consensus 28 ~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i---------------~ 91 (306)
T 2z66_A 28 SSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV---------------I 91 (306)
T ss_dssp TTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSE---------------E
T ss_pred CCCCEEECCCC-ccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcc---------------c
Confidence 35777777777 66677654 56777777777777766543 44556677777777777763 2
Q ss_pred cccccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc----ccCCCccEEEEeceecce--ec
Q 044279 78 TVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD----FRMDHLETLEIVDCSLES--IN 151 (305)
Q Consensus 78 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~L~~L~l~~~~l~~--~~ 151 (305)
.++..+..+++|+.|++++ +........... ...++|+.|+++.+.+.... ..+++|+.|++++|.+++ .+
T Consensus 92 ~l~~~~~~l~~L~~L~l~~--n~l~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 168 (306)
T 2z66_A 92 TMSSNFLGLEQLEHLDFQH--SNLKQMSEFSVF-LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 168 (306)
T ss_dssp EEEEEEETCTTCCEEECTT--SEEESSTTTTTT-TTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEEC
T ss_pred cChhhcCCCCCCCEEECCC--Ccccccccchhh-hhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccch
Confidence 3445566777777777766 222222110111 11233777777754444332 456677777777777543 33
Q ss_pred ccccCCCcccCCCccceEeeeCCCCCccC--CcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceee
Q 044279 152 IYFGDQGRTYCFRNLRHLSVKDCHFMTDL--KWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVID 229 (305)
Q Consensus 152 ~~~~~~~~~~~~~~L~~L~L~~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 229 (305)
..+ ..+++|++|++++| .++.+ ..+..+++|++|++++|.. ..++. ..+..+++|+.|+
T Consensus 169 ~~~------~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~-----------~~~~~l~~L~~L~ 229 (306)
T 2z66_A 169 DIF------TELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNNF-FSLDT-----------FPYKCLNSLQVLD 229 (306)
T ss_dssp SCC------TTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCC-SBCCS-----------GGGTTCTTCCEEE
T ss_pred hHH------hhCcCCCEEECCCC-CcCCcCHHHhcCCCCCCEEECCCCcc-CccCh-----------hhccCcccCCEeE
Confidence 222 56677777777777 55544 2455677777777777553 33222 2345677777777
Q ss_pred ccCcccCce-ecCCCCCCC-CCceEEeeCCC
Q 044279 230 LQHLPSLTS-ICCRAVPLP-SLKTISVYDCP 258 (305)
Q Consensus 230 l~~~~~l~~-~~~~~~~~~-~L~~L~l~~c~ 258 (305)
+++| .++. .+.....++ +|+.|++++++
T Consensus 230 L~~N-~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 230 YSLN-HIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CTTS-CCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred CCCC-CCcccCHHHHHhhhccCCEEEccCCC
Confidence 7777 4443 333344553 67777776664
No 14
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=3.5e-20 Score=174.10 Aligned_cols=82 Identities=16% Similarity=0.253 Sum_probs=66.7
Q ss_pred CCcccEEeCCCCCCccccch-hhhcccccccccccCCccccCCcc-cccccccceeeccccceeeceEEEeecccccccc
Q 044279 1 MHALAVLDLSYNFDLVELPE-AIGKLINLCHLNLSNTKIRELPAG-IKYLKNLKILRLDVFSWFSTELVALHHNFCCATT 78 (305)
Q Consensus 1 l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~ 78 (305)
+++|++|++++| .++.+|+ .++++++|++|++++|.+..+|.. ++.+++|++|++++|.+. ..
T Consensus 98 l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~--------------~~ 162 (597)
T 3oja_B 98 AHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE--------------RI 162 (597)
T ss_dssp CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC--------------BC
T ss_pred CCCCCEEECCCC-cCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCC--------------CC
Confidence 578999999999 7887765 479999999999999999988877 589999999999999752 23
Q ss_pred ccccccCccCccceeEEEe
Q 044279 79 VLAGLESLENIHDISITLC 97 (305)
Q Consensus 79 ~~~~l~~l~~L~~L~l~~~ 97 (305)
.+..+..+++|+.|+++++
T Consensus 163 ~~~~~~~l~~L~~L~L~~N 181 (597)
T 3oja_B 163 EDDTFQATTSLQNLQLSSN 181 (597)
T ss_dssp CTTTTTTCTTCCEEECTTS
T ss_pred ChhhhhcCCcCcEEECcCC
Confidence 3456777888888888773
No 15
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.84 E-value=3.4e-20 Score=162.57 Aligned_cols=217 Identities=16% Similarity=0.201 Sum_probs=165.3
Q ss_pred CCcccEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeecccccccccc
Q 044279 1 MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVL 80 (305)
Q Consensus 1 l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~ 80 (305)
+++|++|++++| .+..++. +..+++|++|++++|.....+..+..+++|++|++++|.+. ..
T Consensus 109 l~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~---------------~~- 170 (347)
T 4fmz_A 109 LTNLRELYLNED-NISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVK---------------DV- 170 (347)
T ss_dssp CTTCSEEECTTS-CCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCC---------------CC-
T ss_pred CCcCCEEECcCC-cccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcC---------------Cc-
Confidence 578999999999 8888877 89999999999999954433445899999999999999743 22
Q ss_pred ccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc--ccCCCccEEEEeceecceecccccCCC
Q 044279 81 AGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD--FRMDHLETLEIVDCSLESINIYFGDQG 158 (305)
Q Consensus 81 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~ 158 (305)
..+..+++|+.|++++ +....+..+... ++|+.++++.+.+...+ ..+++|+.|++++|.+++.+. +
T Consensus 171 ~~~~~l~~L~~L~l~~--n~l~~~~~~~~l----~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-~---- 239 (347)
T 4fmz_A 171 TPIANLTDLYSLSLNY--NQIEDISPLASL----TSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP-L---- 239 (347)
T ss_dssp GGGGGCTTCSEEECTT--SCCCCCGGGGGC----TTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-G----
T ss_pred hhhccCCCCCEEEccC--CcccccccccCC----CccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc-h----
Confidence 2278889999999988 444444333333 34889999866666655 778899999999998777664 2
Q ss_pred cccCCCccceEeeeCCCCCccCCcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCce
Q 044279 159 RTYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTS 238 (305)
Q Consensus 159 ~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 238 (305)
..+++|++|++++| .++.++.+..+++|++|++++|.. ..++ .+..+++|+.|++++| .++.
T Consensus 240 --~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~l-~~~~-------------~~~~l~~L~~L~L~~n-~l~~ 301 (347)
T 4fmz_A 240 --ANLSQLTWLEIGTN-QISDINAVKDLTKLKMLNVGSNQI-SDIS-------------VLNNLSQLNSLFLNNN-QLGN 301 (347)
T ss_dssp --TTCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSCC-CCCG-------------GGGGCTTCSEEECCSS-CCCG
T ss_pred --hcCCCCCEEECCCC-ccCCChhHhcCCCcCEEEccCCcc-CCCh-------------hhcCCCCCCEEECcCC-cCCC
Confidence 57899999999998 777777788899999999999753 3332 4567899999999998 4543
Q ss_pred e-cCCCCCCCCCceEEeeCCCCCCCCCC
Q 044279 239 I-CCRAVPLPSLKTISVYDCPGLRKLPL 265 (305)
Q Consensus 239 ~-~~~~~~~~~L~~L~l~~c~~l~~~~~ 265 (305)
. +.....+++|+.|++++|+ +..++.
T Consensus 302 ~~~~~l~~l~~L~~L~L~~n~-l~~~~~ 328 (347)
T 4fmz_A 302 EDMEVIGGLTNLTTLFLSQNH-ITDIRP 328 (347)
T ss_dssp GGHHHHHTCTTCSEEECCSSS-CCCCGG
T ss_pred cChhHhhccccCCEEEccCCc-cccccC
Confidence 3 3334578999999998885 454433
No 16
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.84 E-value=4.6e-20 Score=167.04 Aligned_cols=214 Identities=21% Similarity=0.274 Sum_probs=160.8
Q ss_pred CcccEEeCCCCCCccccc-hhhhcccccccccccCCccccCCc-ccccccccceeeccccceeeceEEEeeccccccccc
Q 044279 2 HALAVLDLSYNFDLVELP-EAIGKLINLCHLNLSNTKIRELPA-GIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTV 79 (305)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~ 79 (305)
+++++|++++| .+..++ ..+.++++|++|++++|++..++. .+..+++|++|++++|.+ ..+
T Consensus 64 ~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l---------------~~~ 127 (440)
T 3zyj_A 64 TNTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL---------------TTI 127 (440)
T ss_dssp TTCSEEECCSC-CCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC---------------SSC
T ss_pred CCCcEEEccCC-cCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC---------------Cee
Confidence 46889999999 777775 568899999999999998887664 488899999999999874 233
Q ss_pred c-ccccCccCccceeEEEeecCcccccc--cccCCCccccceEEEEE-cCCCcccc----ccCCCccEEEEeceecceec
Q 044279 80 L-AGLESLENIHDISITLCFVDTHAFCR--FQSSPKLQSCVKRLTVA-SPWFSSLD----FRMDHLETLEIVDCSLESIN 151 (305)
Q Consensus 80 ~-~~l~~l~~L~~L~l~~~~~~~~~~~~--l~~~~~~~~~L~~L~l~-~~~~~~~~----~~~~~L~~L~l~~~~l~~~~ 151 (305)
+ ..+..+++|+.|++++ +....+.. +.. .++|+.|+++ ++.+..++ ..+++|+.|++++|.++.++
T Consensus 128 ~~~~~~~l~~L~~L~L~~--N~i~~~~~~~~~~----l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 201 (440)
T 3zyj_A 128 PNGAFVYLSKLKELWLRN--NPIESIPSYAFNR----IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP 201 (440)
T ss_dssp CTTTSCSCSSCCEEECCS--CCCCEECTTTTTT----CTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC
T ss_pred CHhHhhccccCceeeCCC--CcccccCHHHhhh----CcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc
Confidence 3 4578888999999888 33332221 222 2348889988 67666655 66888999999998887776
Q ss_pred ccccCCCcccCCCccceEeeeCCCCCccCC--cCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceee
Q 044279 152 IYFGDQGRTYCFRNLRHLSVKDCHFMTDLK--WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVID 229 (305)
Q Consensus 152 ~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 229 (305)
. ...+++|+.|+|++| .++.++ .+..+++|++|++++|. +..+.+ ..+..+++|+.|+
T Consensus 202 ~-------~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~-----------~~~~~l~~L~~L~ 261 (440)
T 3zyj_A 202 N-------LTPLIKLDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQSQ-IQVIER-----------NAFDNLQSLVEIN 261 (440)
T ss_dssp C-------CTTCSSCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCC-CCEECT-----------TSSTTCTTCCEEE
T ss_pred c-------cCCCcccCEEECCCC-ccCccChhhhccCccCCEEECCCCc-eeEECh-----------hhhcCCCCCCEEE
Confidence 3 257888999999998 666652 57788899999999865 444433 3567889999999
Q ss_pred ccCcccCceecCCC-CCCCCCceEEeeCCC
Q 044279 230 LQHLPSLTSICCRA-VPLPSLKTISVYDCP 258 (305)
Q Consensus 230 l~~~~~l~~~~~~~-~~~~~L~~L~l~~c~ 258 (305)
|++| .++.++... ..+++|+.|++++++
T Consensus 262 L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 262 LAHN-NLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred CCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence 9998 777776543 468899999998876
No 17
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.84 E-value=4.9e-20 Score=160.55 Aligned_cols=216 Identities=18% Similarity=0.220 Sum_probs=169.0
Q ss_pred CCcccEEeCCCCCCcccc-chhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeeccccccccc
Q 044279 1 MHALAVLDLSYNFDLVEL-PEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTV 79 (305)
Q Consensus 1 l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~ 79 (305)
+++|++|++++| .++.+ |..++++++|++|++++|++..+|..+. ++|++|++++|.+. ...
T Consensus 75 l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~--------------~~~ 137 (330)
T 1xku_A 75 LKNLHTLILINN-KISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEIT--------------KVR 137 (330)
T ss_dssp CTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCC--------------BBC
T ss_pred CCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCccc--------------ccC
Confidence 578999999999 78877 6789999999999999999999988765 79999999999852 233
Q ss_pred cccccCccCccceeEEEeecCccc----ccccccCCCccccceEEEEEcCCCcccc-ccCCCccEEEEeceecceecccc
Q 044279 80 LAGLESLENIHDISITLCFVDTHA----FCRFQSSPKLQSCVKRLTVASPWFSSLD-FRMDHLETLEIVDCSLESINIYF 154 (305)
Q Consensus 80 ~~~l~~l~~L~~L~l~~~~~~~~~----~~~l~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~ 154 (305)
+..+..+++|+.|+++. +.... ...+... ++|+.|+++.+.++.++ ...++|+.|++++|.++.++...
T Consensus 138 ~~~~~~l~~L~~L~l~~--n~l~~~~~~~~~~~~l----~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~ 211 (330)
T 1xku_A 138 KSVFNGLNQMIVVELGT--NPLKSSGIENGAFQGM----KKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAAS 211 (330)
T ss_dssp HHHHTTCTTCCEEECCS--SCCCGGGBCTTGGGGC----TTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGG
T ss_pred HhHhcCCccccEEECCC--CcCCccCcChhhccCC----CCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHHH
Confidence 45678899999999988 33321 1222222 34999999977777777 44589999999999988776544
Q ss_pred cCCCcccCCCccceEeeeCCCCCccCC--cCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccC
Q 044279 155 GDQGRTYCFRNLRHLSVKDCHFMTDLK--WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQH 232 (305)
Q Consensus 155 ~~~~~~~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 232 (305)
. ..+++|++|++++| .++.++ .+..+++|++|++++|. +..++. .+..+++|++|++++
T Consensus 212 ~-----~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~------------~l~~l~~L~~L~l~~ 272 (330)
T 1xku_A 212 L-----KGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNNK-LVKVPG------------GLADHKYIQVVYLHN 272 (330)
T ss_dssp G-----TTCTTCCEEECCSS-CCCEECTTTGGGSTTCCEEECCSSC-CSSCCT------------TTTTCSSCCEEECCS
T ss_pred h-----cCCCCCCEEECCCC-cCceeChhhccCCCCCCEEECCCCc-CccCCh------------hhccCCCcCEEECCC
Confidence 2 67899999999999 666653 57788999999999976 445554 677899999999999
Q ss_pred cccCceecCCCC-------CCCCCceEEeeCCCC
Q 044279 233 LPSLTSICCRAV-------PLPSLKTISVYDCPG 259 (305)
Q Consensus 233 ~~~l~~~~~~~~-------~~~~L~~L~l~~c~~ 259 (305)
| .++.++.... ..+.|+.|++++++.
T Consensus 273 N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 273 N-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp S-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred C-cCCccChhhcCCcccccccccccceEeecCcc
Confidence 8 6776654332 247889999988864
No 18
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.84 E-value=4.1e-20 Score=167.97 Aligned_cols=217 Identities=18% Similarity=0.204 Sum_probs=154.4
Q ss_pred CcccEEeCCCCCCcccc-chhhhcccccccccccCCccccCC-cccccccccceeeccccceeeceEEEeeccccccccc
Q 044279 2 HALAVLDLSYNFDLVEL-PEAIGKLINLCHLNLSNTKIRELP-AGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTV 79 (305)
Q Consensus 2 ~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~ 79 (305)
+++++|++++| .++.+ |..+.++++|++|++++|++..++ ..+..+++|++|++++|.+. ...
T Consensus 75 ~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~--------------~~~ 139 (452)
T 3zyi_A 75 SNTRYLNLMEN-NIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT--------------VIP 139 (452)
T ss_dssp TTCSEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS--------------BCC
T ss_pred CCccEEECcCC-cCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCC--------------ccC
Confidence 46888889888 77766 456888888999999888888665 45888888999999888742 222
Q ss_pred cccccCccCccceeEEEeecCcccccccccCCCccccceEEEEE-cCCCcccc----ccCCCccEEEEeceecceecccc
Q 044279 80 LAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVA-SPWFSSLD----FRMDHLETLEIVDCSLESINIYF 154 (305)
Q Consensus 80 ~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~-~~~~~~~~----~~~~~L~~L~l~~~~l~~~~~~~ 154 (305)
...+..+++|+.|++++ +....+.. ......++|+.|+++ ++.++.++ ..+++|+.|++++|.+++++.
T Consensus 140 ~~~~~~l~~L~~L~L~~--N~l~~~~~--~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-- 213 (452)
T 3zyi_A 140 SGAFEYLSKLRELWLRN--NPIESIPS--YAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN-- 213 (452)
T ss_dssp TTTSSSCTTCCEEECCS--CCCCEECT--TTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC--
T ss_pred hhhhcccCCCCEEECCC--CCcceeCH--hHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc--
Confidence 34477788888888887 33332221 011122348888888 67766665 567888888888888776652
Q ss_pred cCCCcccCCCccceEeeeCCCCCccC-C-cCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccC
Q 044279 155 GDQGRTYCFRNLRHLSVKDCHFMTDL-K-WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQH 232 (305)
Q Consensus 155 ~~~~~~~~~~~L~~L~L~~~~~l~~~-~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 232 (305)
...+++|+.|++++| .++.+ + .+..+++|++|++++|.. ..+.+ ..+..+++|+.|+|++
T Consensus 214 -----~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~-----------~~~~~l~~L~~L~L~~ 275 (452)
T 3zyi_A 214 -----LTPLVGLEELEMSGN-HFPEIRPGSFHGLSSLKKLWVMNSQV-SLIER-----------NAFDGLASLVELNLAH 275 (452)
T ss_dssp -----CTTCTTCCEEECTTS-CCSEECGGGGTTCTTCCEEECTTSCC-CEECT-----------TTTTTCTTCCEEECCS
T ss_pred -----ccccccccEEECcCC-cCcccCcccccCccCCCEEEeCCCcC-ceECH-----------HHhcCCCCCCEEECCC
Confidence 256788888888888 55554 2 567788888888888653 33333 2567788899999988
Q ss_pred cccCceecCCC-CCCCCCceEEeeCCC
Q 044279 233 LPSLTSICCRA-VPLPSLKTISVYDCP 258 (305)
Q Consensus 233 ~~~l~~~~~~~-~~~~~L~~L~l~~c~ 258 (305)
| .++.++... ..+++|+.|++++++
T Consensus 276 N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 276 N-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp S-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred C-cCCccChHHhccccCCCEEEccCCC
Confidence 8 777766543 468888888888775
No 19
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.83 E-value=8e-20 Score=167.07 Aligned_cols=240 Identities=18% Similarity=0.189 Sum_probs=175.2
Q ss_pred CcccEEeCCCCCCccccc-hhhhcccccccccccCCccccC-CcccccccccceeeccccceeeceEEEeeccccccccc
Q 044279 2 HALAVLDLSYNFDLVELP-EAIGKLINLCHLNLSNTKIREL-PAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTV 79 (305)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~ 79 (305)
+++++|++++| .++.++ ..+.++++|++|++++|.+..+ |..++++++|++|++++|.+ ..+
T Consensus 32 ~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l---------------~~~ 95 (477)
T 2id5_A 32 TETRLLDLGKN-RIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL---------------KLI 95 (477)
T ss_dssp TTCSEEECCSS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC---------------CSC
T ss_pred CCCcEEECCCC-ccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC---------------Ccc
Confidence 47899999999 888775 5699999999999999999866 66799999999999999984 233
Q ss_pred c-ccccCccCccceeEEEeecCcccc--cccccCCCccccceEEEEEcCCCcccc----ccCCCccEEEEeceecceecc
Q 044279 80 L-AGLESLENIHDISITLCFVDTHAF--CRFQSSPKLQSCVKRLTVASPWFSSLD----FRMDHLETLEIVDCSLESINI 152 (305)
Q Consensus 80 ~-~~l~~l~~L~~L~l~~~~~~~~~~--~~l~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~L~~L~l~~~~l~~~~~ 152 (305)
+ ..+..+++|+.|++++ +..... ..+.. ..+|++|+++.+.+..+. ..+++|+.|++++|.++.++.
T Consensus 96 ~~~~~~~l~~L~~L~Ls~--n~i~~~~~~~~~~----l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 169 (477)
T 2id5_A 96 PLGVFTGLSNLTKLDISE--NKIVILLDYMFQD----LYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169 (477)
T ss_dssp CTTSSTTCTTCCEEECTT--SCCCEECTTTTTT----CTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred CcccccCCCCCCEEECCC--CccccCChhHccc----cccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence 3 4578899999999988 333222 22222 245999999977666554 678899999999999888776
Q ss_pred cccCCCcccCCCccceEeeeCCCCCccCC--cCCCCCCCCEEEEeccccccccccccCCC-----------CCcccc-cc
Q 044279 153 YFGDQGRTYCFRNLRHLSVKDCHFMTDLK--WIRCAPNLQFLYVSDCQVLSEIIGTYESP-----------GTSEIE-ES 218 (305)
Q Consensus 153 ~~~~~~~~~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-----------~~~~~~-~~ 218 (305)
... ..+++|+.|++++| .++.++ .+..+++|++|++++|..+..++...... .-..++ ..
T Consensus 170 ~~l-----~~l~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 243 (477)
T 2id5_A 170 EAL-----SHLHGLIVLRLRHL-NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLA 243 (477)
T ss_dssp HHH-----TTCTTCCEEEEESC-CCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHH
T ss_pred hHh-----cccCCCcEEeCCCC-cCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHH
Confidence 543 67899999999999 666553 57788999999999988766655422110 001111 23
Q ss_pred ccccCccceeeccCcccCceecCC-CCCCCCCceEEeeCCCCCCCCCCCCccc
Q 044279 219 HHFLSNLMVIDLQHLPSLTSICCR-AVPLPSLKTISVYDCPGLRKLPLNSGSA 270 (305)
Q Consensus 219 ~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 270 (305)
+..+++|+.|+++++ .++.++.. ...+++|+.|+++++..-...|..+...
T Consensus 244 ~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 295 (477)
T 2id5_A 244 VRHLVYLRFLNLSYN-PISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGL 295 (477)
T ss_dssp HTTCTTCCEEECCSS-CCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTC
T ss_pred hcCccccCeeECCCC-cCCccChhhccccccCCEEECCCCccceECHHHhcCc
Confidence 567888888888888 56666543 4578889999998774333334444443
No 20
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.83 E-value=4.5e-20 Score=167.65 Aligned_cols=130 Identities=20% Similarity=0.173 Sum_probs=99.4
Q ss_pred cceEEEEEcCCCcccc----ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCC--cCCCCCCC
Q 044279 116 CVKRLTVASPWFSSLD----FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK--WIRCAPNL 189 (305)
Q Consensus 116 ~L~~L~l~~~~~~~~~----~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L 189 (305)
+|+.|+++.+.+.... ..+++|+.|++++|.+++++.... ..+++|++|++++| .++.++ .+..+++|
T Consensus 276 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-----~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L 349 (455)
T 3v47_A 276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAF-----WGLTHLLKLNLSQN-FLGSIDSRMFENLDKL 349 (455)
T ss_dssp CCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTT-----TTCTTCCEEECCSS-CCCEECGGGGTTCTTC
T ss_pred CceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHh-----cCcccCCEEECCCC-ccCCcChhHhcCcccC
Confidence 3555555544444332 678899999999999888765442 67899999999999 666653 57789999
Q ss_pred CEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCceecCCC-CCCCCCceEEeeCCCCCCCCC
Q 044279 190 QFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICCRA-VPLPSLKTISVYDCPGLRKLP 264 (305)
Q Consensus 190 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~l~~c~~l~~~~ 264 (305)
++|++++|.. ..+.+ ..+..+++|++|++++| .++.++... ..+++|+.|++++++.-...|
T Consensus 350 ~~L~Ls~N~l-~~~~~-----------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 350 EVLDLSYNHI-RALGD-----------QSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CEEECCSSCC-CEECT-----------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CEEECCCCcc-cccCh-----------hhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 9999999764 44433 36778999999999998 788777654 579999999999987655555
No 21
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.83 E-value=1.4e-19 Score=165.04 Aligned_cols=225 Identities=20% Similarity=0.262 Sum_probs=123.0
Q ss_pred CCcccEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeecccccccccc
Q 044279 1 MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVL 80 (305)
Q Consensus 1 l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~ 80 (305)
+++|++|++++| .++.+|. ++++++|++|++++|.+..++. ++.+++|++|++++|.+.. .+
T Consensus 67 l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~---------------~~ 128 (466)
T 1o6v_A 67 LNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITD---------------ID 128 (466)
T ss_dssp CTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC---------------CG
T ss_pred hcCCCEEECCCC-ccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCC---------------Ch
Confidence 467788888887 6777766 7778888888888887777665 7778888888888776432 12
Q ss_pred ccccCccCccceeEEEeecCcccccccccCCC-----------------ccccceEEEEEcCCCcccc--ccCCCccEEE
Q 044279 81 AGLESLENIHDISITLCFVDTHAFCRFQSSPK-----------------LQSCVKRLTVASPWFSSLD--FRMDHLETLE 141 (305)
Q Consensus 81 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~-----------------~~~~L~~L~l~~~~~~~~~--~~~~~L~~L~ 141 (305)
.+..+++|+.|+++++. ...+..+....+ ..++|+.|+++.+.+..++ ..+++|+.|+
T Consensus 129 -~~~~l~~L~~L~l~~n~--l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~ 205 (466)
T 1o6v_A 129 -PLKNLTNLNRLELSSNT--ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLI 205 (466)
T ss_dssp -GGTTCTTCSEEEEEEEE--ECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEE
T ss_pred -HHcCCCCCCEEECCCCc--cCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChhhccCCCCCEEE
Confidence 26666667777766632 222222111111 1123555555544444433 4455566666
Q ss_pred EeceecceecccccCCCcccCCCccceEeeeCCCCCccCCcCCCCCCCCEEEEeccccccccccccCCC-------CC--
Q 044279 142 IVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESP-------GT-- 212 (305)
Q Consensus 142 l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-------~~-- 212 (305)
+++|.+++.+. + ..+++|+.|++++| .++.++.+..+++|+.|++++|... .+++..... ..
T Consensus 206 l~~n~l~~~~~-~------~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~ 276 (466)
T 1o6v_A 206 ATNNQISDITP-L------GILTNLDELSLNGN-QLKDIGTLASLTNLTDLDLANNQIS-NLAPLSGLTKLTELKLGANQ 276 (466)
T ss_dssp CCSSCCCCCGG-G------GGCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSCCC-CCGGGTTCTTCSEEECCSSC
T ss_pred ecCCccccccc-c------cccCCCCEEECCCC-CcccchhhhcCCCCCEEECCCCccc-cchhhhcCCCCCEEECCCCc
Confidence 65555443332 1 33455555555555 4444444445555555555554321 111100000 00
Q ss_pred -ccccccccccCccceeeccCcccCceecCCCCCCCCCceEEeeCCC
Q 044279 213 -SEIEESHHFLSNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCP 258 (305)
Q Consensus 213 -~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~ 258 (305)
.+.+ .+..+++|+.|++++| .++.++. ...+++|+.|++++|.
T Consensus 277 l~~~~-~~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~L~~n~ 320 (466)
T 1o6v_A 277 ISNIS-PLAGLTALTNLELNEN-QLEDISP-ISNLKNLTYLTLYFNN 320 (466)
T ss_dssp CCCCG-GGTTCTTCSEEECCSS-CCSCCGG-GGGCTTCSEEECCSSC
T ss_pred cCccc-cccCCCccCeEEcCCC-cccCchh-hcCCCCCCEEECcCCc
Confidence 0001 1456677777777776 5555544 4567778888887773
No 22
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.83 E-value=1.9e-20 Score=162.05 Aligned_cols=228 Identities=17% Similarity=0.160 Sum_probs=173.1
Q ss_pred CCcccEEeCCC-CCCccccchhhhcccccccccccCCccc-cCCcccccccccceeeccccceeeceEEEeecccccccc
Q 044279 1 MHALAVLDLSY-NFDLVELPEAIGKLINLCHLNLSNTKIR-ELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATT 78 (305)
Q Consensus 1 l~~L~~L~l~~-~~~~~~lp~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~ 78 (305)
+++|++|++++ |...+.+|..++++++|++|++++|++. .+|..++.+++|++|++++|.+ ...
T Consensus 75 l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l--------------~~~ 140 (313)
T 1ogq_A 75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL--------------SGT 140 (313)
T ss_dssp CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEE--------------ESC
T ss_pred CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCcc--------------CCc
Confidence 57899999995 6233478888999999999999999987 8888899999999999999985 335
Q ss_pred ccccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCc-ccc---ccCCCccEEEEeceecceecccc
Q 044279 79 VLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFS-SLD---FRMDHLETLEIVDCSLESINIYF 154 (305)
Q Consensus 79 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~-~~~---~~~~~L~~L~l~~~~l~~~~~~~ 154 (305)
.+..+..+++|+.|+++++.........+.... ++|+.|+++.+.+. ..+ ..++ |+.|++++|.++......
T Consensus 141 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~---~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~ 216 (313)
T 1ogq_A 141 LPPSISSLPNLVGITFDGNRISGAIPDSYGSFS---KLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVL 216 (313)
T ss_dssp CCGGGGGCTTCCEEECCSSCCEEECCGGGGCCC---TTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGG
T ss_pred CChHHhcCCCCCeEECcCCcccCcCCHHHhhhh---hcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHH
Confidence 677889999999999988322212223333332 24999999966555 233 4444 999999999977655444
Q ss_pred cCCCcccCCCccceEeeeCCCCCccCCcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcc
Q 044279 155 GDQGRTYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLP 234 (305)
Q Consensus 155 ~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 234 (305)
. ..+++|+.|++++|.....++.+..+++|++|++++|.....++. .+..+++|++|++++|
T Consensus 217 ~-----~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~------------~l~~l~~L~~L~Ls~N- 278 (313)
T 1ogq_A 217 F-----GSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQ------------GLTQLKFLHSLNVSFN- 278 (313)
T ss_dssp C-----CTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCG------------GGGGCTTCCEEECCSS-
T ss_pred H-----hcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCCh------------HHhcCcCCCEEECcCC-
Confidence 2 678999999999994433456677889999999999875444444 6788999999999999
Q ss_pred cCc-eecCCCCCCCCCceEEeeCCCCCCCCCC
Q 044279 235 SLT-SICCRAVPLPSLKTISVYDCPGLRKLPL 265 (305)
Q Consensus 235 ~l~-~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 265 (305)
.++ .+|.. ..+++|+.+++++++.+...|.
T Consensus 279 ~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p~ 309 (313)
T 1ogq_A 279 NLCGEIPQG-GNLQRFDVSAYANNKCLCGSPL 309 (313)
T ss_dssp EEEEECCCS-TTGGGSCGGGTCSSSEEESTTS
T ss_pred cccccCCCC-ccccccChHHhcCCCCccCCCC
Confidence 554 56654 7889999999999887765543
No 23
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.83 E-value=4.3e-20 Score=174.62 Aligned_cols=247 Identities=11% Similarity=0.127 Sum_probs=152.5
Q ss_pred CCcccEEeCCCCCCcc--ccchhhhcc------cccccccccCCccccCCc--ccccccccceeeccccceeeceEEEee
Q 044279 1 MHALAVLDLSYNFDLV--ELPEAIGKL------INLCHLNLSNTKIRELPA--GIKYLKNLKILRLDVFSWFSTELVALH 70 (305)
Q Consensus 1 l~~L~~L~l~~~~~~~--~lp~~~~~l------~~L~~L~l~~~~l~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~l~~ 70 (305)
+++|++|++++|..++ .+|..++++ ++|++|++++|++..+|. .++.+++|++|++++|.+.
T Consensus 272 l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~-------- 343 (636)
T 4eco_A 272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE-------- 343 (636)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCE--------
T ss_pred CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCc--------
Confidence 5789999999994266 589888887 999999999999999998 8999999999999999853
Q ss_pred ccccccccccccccCccCccceeEEEeecCcccccccccCCCcccc-ceEEEEEcCCCcccc-----ccCCCccEEEEec
Q 044279 71 HNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSC-VKRLTVASPWFSSLD-----FRMDHLETLEIVD 144 (305)
Q Consensus 71 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~-L~~L~l~~~~~~~~~-----~~~~~L~~L~l~~ 144 (305)
..++ .+..+++|+.|++++ +.... +.....-..+ |+.|+++.+.++.++ ..+++|+.|++++
T Consensus 344 ------g~ip-~~~~l~~L~~L~L~~--N~l~~---lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~ 411 (636)
T 4eco_A 344 ------GKLP-AFGSEIKLASLNLAY--NQITE---IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSY 411 (636)
T ss_dssp ------EECC-CCEEEEEESEEECCS--SEEEE---CCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCS
T ss_pred ------cchh-hhCCCCCCCEEECCC--Ccccc---ccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcC
Confidence 2445 888999999999988 33332 2222222344 888888866666655 2234677888877
Q ss_pred eecceecccccC-CC-cccCCCccceEeeeCCCCCccCCc--CCCCCCCCEEEEeccccccccccccCC-----------
Q 044279 145 CSLESINIYFGD-QG-RTYCFRNLRHLSVKDCHFMTDLKW--IRCAPNLQFLYVSDCQVLSEIIGTYES----------- 209 (305)
Q Consensus 145 ~~l~~~~~~~~~-~~-~~~~~~~L~~L~L~~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~----------- 209 (305)
|.++........ .. ..-.+++|++|++++| .++.++. +..+++|++|++++|... .++.....
T Consensus 412 N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~ 489 (636)
T 4eco_A 412 NEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYL 489 (636)
T ss_dssp SCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGG
T ss_pred CcCCCcchhhhcccccccccCCCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCC
Confidence 775443222110 00 0014456777777776 5555442 334666677776665432 43331110
Q ss_pred C--------CCcccccccc--ccCccceeeccCcccCceecCCCCCCCCCceEEeeC------CCCCCCCCCCCccc
Q 044279 210 P--------GTSEIEESHH--FLSNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYD------CPGLRKLPLNSGSA 270 (305)
Q Consensus 210 ~--------~~~~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~------c~~l~~~~~~~~~~ 270 (305)
. .-..++..+. .+++|+.|++++| .++.++.....+++|+.|++++ +.....+|..+...
T Consensus 490 L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l 565 (636)
T 4eco_A 490 LTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLC 565 (636)
T ss_dssp CCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGC
T ss_pred ccEEECcCCcCCccChhhhhccCCCcCEEECCCC-CCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcC
Confidence 0 0001222333 5666666666666 4444555555666666666633 33344555555444
No 24
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.83 E-value=1.9e-20 Score=164.72 Aligned_cols=232 Identities=18% Similarity=0.164 Sum_probs=147.7
Q ss_pred CcccEEeCCCCCCccccch-hhhcccccccccccCCccccCC-cccccccccceeeccccceeeceEEEeeccccccccc
Q 044279 2 HALAVLDLSYNFDLVELPE-AIGKLINLCHLNLSNTKIRELP-AGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTV 79 (305)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~ 79 (305)
++|++|++++| .++.+|. .+.++++|++|++++|++..++ ..++.+++|++|++++|.+ ..+
T Consensus 52 ~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l---------------~~~ 115 (353)
T 2z80_A 52 EAVKSLDLSNN-RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL---------------SNL 115 (353)
T ss_dssp TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC---------------SSC
T ss_pred ccCcEEECCCC-cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC---------------CcC
Confidence 46888888888 7777765 5888888888888888887664 4488888888888888874 233
Q ss_pred ccc-ccCccCccceeEEEeecCcccccccccCCCccccceEEEEE-cCCCcccc----ccCCCccEEEEeceecceeccc
Q 044279 80 LAG-LESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVA-SPWFSSLD----FRMDHLETLEIVDCSLESINIY 153 (305)
Q Consensus 80 ~~~-l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~-~~~~~~~~----~~~~~L~~L~l~~~~l~~~~~~ 153 (305)
+.. +..+++|+.|++++ +....++... .....++|++|+++ ++.++.++ ..+++|+.|++++|.++.....
T Consensus 116 ~~~~~~~l~~L~~L~L~~--n~l~~l~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 192 (353)
T 2z80_A 116 SSSWFKPLSSLTFLNLLG--NPYKTLGETS-LFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK 192 (353)
T ss_dssp CHHHHTTCTTCSEEECTT--CCCSSSCSSC-SCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred CHhHhCCCccCCEEECCC--CCCcccCchh-hhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHH
Confidence 333 67778888888877 3332222200 11122348888888 43455543 5667788888888776666433
Q ss_pred ccCCCcccCCCccceEeeeCCCCCccCC--cCCCCCCCCEEEEeccccccccccccCCC-----------------CC--
Q 044279 154 FGDQGRTYCFRNLRHLSVKDCHFMTDLK--WIRCAPNLQFLYVSDCQVLSEIIGTYESP-----------------GT-- 212 (305)
Q Consensus 154 ~~~~~~~~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-----------------~~-- 212 (305)
. +..+++|++|++++| .++.++ .+..+++|++|++++|... ..+...... .+
T Consensus 193 ~-----l~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~ 265 (353)
T 2z80_A 193 S-----LKSIQNVSHLILHMK-QHILLLEIFVDVTSSVECLELRDTDLD-TFHFSELSTGETNSLIKKFTFRNVKITDES 265 (353)
T ss_dssp T-----TTTCSEEEEEEEECS-CSTTHHHHHHHHTTTEEEEEEESCBCT-TCCCC------CCCCCCEEEEESCBCCHHH
T ss_pred H-----HhccccCCeecCCCC-ccccchhhhhhhcccccEEECCCCccc-cccccccccccccchhhccccccccccCcc
Confidence 3 256777888888877 455543 2334677888888776532 222100000 00
Q ss_pred -ccccccccccCccceeeccCcccCceecCCC-CCCCCCceEEeeCCCCC
Q 044279 213 -SEIEESHHFLSNLMVIDLQHLPSLTSICCRA-VPLPSLKTISVYDCPGL 260 (305)
Q Consensus 213 -~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~l~~c~~l 260 (305)
..++..+..+++|+.|++++| .++.++... ..+++|+.|++++++..
T Consensus 266 l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 266 LFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp HHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred hhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCCcc
Confidence 012224567788888888887 677777664 57888888888877543
No 25
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=5.3e-20 Score=168.61 Aligned_cols=212 Identities=18% Similarity=0.102 Sum_probs=167.2
Q ss_pred CcccEEeCCCCCCccccc-hhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeecccccccccc
Q 044279 2 HALAVLDLSYNFDLVELP-EAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVL 80 (305)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~ 80 (305)
++|++|++++| .++.++ ..++.+++|++|++++|.+...++ ++.+++|++|++++|.+..
T Consensus 34 ~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~----------------- 94 (487)
T 3oja_A 34 WNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQE----------------- 94 (487)
T ss_dssp GGCCEEECCSS-CCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEE-----------------
T ss_pred CCccEEEeeCC-cCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCC-----------------
Confidence 58999999999 777775 579999999999999999886654 8999999999999997532
Q ss_pred ccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc----ccCCCccEEEEeceecceecccccC
Q 044279 81 AGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD----FRMDHLETLEIVDCSLESINIYFGD 156 (305)
Q Consensus 81 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~L~~L~l~~~~l~~~~~~~~~ 156 (305)
+...++|+.|++++ +....+..- ..++|+.|+++.|.++... ..+++|+.|++++|.++..+....
T Consensus 95 --l~~~~~L~~L~L~~--N~l~~~~~~-----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l- 164 (487)
T 3oja_A 95 --LLVGPSIETLHAAN--NNISRVSCS-----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL- 164 (487)
T ss_dssp --EEECTTCCEEECCS--SCCCCEEEC-----CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGG-
T ss_pred --CCCCCCcCEEECcC--CcCCCCCcc-----ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHH-
Confidence 22337899999988 333322211 1245999999977776654 668999999999999777554332
Q ss_pred CCcccCCCccceEeeeCCCCCccCCcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccC
Q 044279 157 QGRTYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSL 236 (305)
Q Consensus 157 ~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 236 (305)
...+++|+.|+|++| .++.++....+++|+.|++++|. +..+++ .+..+++|+.|++++| .+
T Consensus 165 ---~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~------------~~~~l~~L~~L~Ls~N-~l 226 (487)
T 3oja_A 165 ---AASSDTLEHLNLQYN-FIYDVKGQVVFAKLKTLDLSSNK-LAFMGP------------EFQSAAGVTWISLRNN-KL 226 (487)
T ss_dssp ---GGGTTTCCEEECTTS-CCCEEECCCCCTTCCEEECCSSC-CCEECG------------GGGGGTTCSEEECTTS-CC
T ss_pred ---hhhCCcccEEecCCC-ccccccccccCCCCCEEECCCCC-CCCCCH------------hHcCCCCccEEEecCC-cC
Confidence 146899999999999 77777767779999999999976 555555 5778999999999998 78
Q ss_pred ceecCCCCCCCCCceEEeeCCCCC
Q 044279 237 TSICCRAVPLPSLKTISVYDCPGL 260 (305)
Q Consensus 237 ~~~~~~~~~~~~L~~L~l~~c~~l 260 (305)
+.++.....+++|+.|++++|+..
T Consensus 227 ~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 227 VLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CEECTTCCCCTTCCEEECTTCCBC
T ss_pred cccchhhccCCCCCEEEcCCCCCc
Confidence 888888788999999999988654
No 26
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.83 E-value=1.8e-19 Score=157.14 Aligned_cols=224 Identities=18% Similarity=0.157 Sum_probs=120.5
Q ss_pred cccEEeCCCCCCccccchhhhcccccccccccCCccccCCc-ccccccccceeeccccceeeceEEEeeccccccccccc
Q 044279 3 ALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPA-GIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLA 81 (305)
Q Consensus 3 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~ 81 (305)
+++.++++++ .++.+|..+. ++|++|++++|.+..++. .++.+++|++|++++|.+. ...+.
T Consensus 34 ~l~~l~~~~~-~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~--------------~~~~~ 96 (332)
T 2ft3_A 34 HLRVVQCSDL-GLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS--------------KIHEK 96 (332)
T ss_dssp ETTEEECCSS-CCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC--------------EECGG
T ss_pred cCCEEECCCC-CccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccC--------------ccCHh
Confidence 4566666666 5555555432 456666666666554433 4566666666666666531 22244
Q ss_pred cccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc----ccCCCccEEEEeceecceecccccCC
Q 044279 82 GLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD----FRMDHLETLEIVDCSLESINIYFGDQ 157 (305)
Q Consensus 82 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~L~~L~l~~~~l~~~~~~~~~~ 157 (305)
.+..+++|+.|++++ +....++.- ...+|++|+++.+.+..++ ..+++|+.|++++|.++..+......
T Consensus 97 ~~~~l~~L~~L~L~~--n~l~~l~~~-----~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 169 (332)
T 2ft3_A 97 AFSPLRKLQKLYISK--NHLVEIPPN-----LPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAF 169 (332)
T ss_dssp GSTTCTTCCEEECCS--SCCCSCCSS-----CCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSS
T ss_pred HhhCcCCCCEEECCC--CcCCccCcc-----ccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccc
Confidence 555566666666655 222221110 0133555555544444333 34555555555555543211110000
Q ss_pred Cc-----------------ccCCCccceEeeeCCCCCccCC--cCCCCCCCCEEEEeccccccccccccCCCCCcccccc
Q 044279 158 GR-----------------TYCFRNLRHLSVKDCHFMTDLK--WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEES 218 (305)
Q Consensus 158 ~~-----------------~~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 218 (305)
+. ....++|++|++++| .++.++ .+..+++|++|++++|.. ..+++ ..
T Consensus 170 ~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n-~i~~~~~~~l~~l~~L~~L~L~~N~l-~~~~~-----------~~ 236 (332)
T 2ft3_A 170 DGLKLNYLRISEAKLTGIPKDLPETLNELHLDHN-KIQAIELEDLLRYSKLYRLGLGHNQI-RMIEN-----------GS 236 (332)
T ss_dssp CSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSS-CCCCCCTTSSTTCTTCSCCBCCSSCC-CCCCT-----------TG
T ss_pred cCCccCEEECcCCCCCccCccccCCCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCCcC-CcCCh-----------hH
Confidence 00 011245666666666 444442 455667777777777543 32222 24
Q ss_pred ccccCccceeeccCcccCceecCCCCCCCCCceEEeeCCCCCCCCCC
Q 044279 219 HHFLSNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKLPL 265 (305)
Q Consensus 219 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 265 (305)
+..+++|+.|++++| .++.++.....+++|+.|+++++ .++.++.
T Consensus 237 ~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~l~~~~~ 281 (332)
T 2ft3_A 237 LSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTN-NITKVGV 281 (332)
T ss_dssp GGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSS-CCCBCCT
T ss_pred hhCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCC-CCCccCh
Confidence 667888888888887 67777776777888888888776 4555544
No 27
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.82 E-value=6.9e-20 Score=159.78 Aligned_cols=231 Identities=18% Similarity=0.178 Sum_probs=156.2
Q ss_pred CcccEEeCCCCCCccccc-hhhhcccccccccccCCccccC-Ccccccccccceeeccccceeec--------eEE-Eee
Q 044279 2 HALAVLDLSYNFDLVELP-EAIGKLINLCHLNLSNTKIREL-PAGIKYLKNLKILRLDVFSWFST--------ELV-ALH 70 (305)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~--------~~~-l~~ 70 (305)
++|++|++++| .++.++ ..++++++|++|++++|++..+ |..++.+++|++|++++|.+..+ ..+ +.+
T Consensus 54 ~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~ 132 (332)
T 2ft3_A 54 PDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHD 132 (332)
T ss_dssp TTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCCTTCCEEECCS
T ss_pred CCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCccccccCCEEECCC
Confidence 46788888888 677664 4578888888888888877755 55677888888888888765332 000 111
Q ss_pred cccccccccc-ccccCccCccceeEEEeecCccccccccc-CCCccccceEEEEEcCCCcccc-ccCCCccEEEEeceec
Q 044279 71 HNFCCATTVL-AGLESLENIHDISITLCFVDTHAFCRFQS-SPKLQSCVKRLTVASPWFSSLD-FRMDHLETLEIVDCSL 147 (305)
Q Consensus 71 ~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~-~~~~~L~~L~l~~~~l 147 (305)
+.+ ..++ ..+..+++|+.|++.+ +.......... .... +|+.|+++.+.++.++ .-.++|+.|++++|.+
T Consensus 133 n~i---~~~~~~~~~~l~~L~~L~l~~--n~l~~~~~~~~~~~~l--~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i 205 (332)
T 2ft3_A 133 NRI---RKVPKGVFSGLRNMNCIEMGG--NPLENSGFEPGAFDGL--KLNYLRISEAKLTGIPKDLPETLNELHLDHNKI 205 (332)
T ss_dssp SCC---CCCCSGGGSSCSSCCEEECCS--CCCBGGGSCTTSSCSC--CCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCC
T ss_pred Ccc---CccCHhHhCCCccCCEEECCC--CccccCCCCcccccCC--ccCEEECcCCCCCccCccccCCCCEEECCCCcC
Confidence 111 1222 3356677777777766 32221101011 1111 4777777766666666 3346889999998887
Q ss_pred ceecccccCCCcccCCCccceEeeeCCCCCccCC--cCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCcc
Q 044279 148 ESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK--WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNL 225 (305)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 225 (305)
+.++... +..+++|++|++++| .++.++ .+..+++|++|++++|. +..++. .+..+++|
T Consensus 206 ~~~~~~~-----l~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~------------~l~~l~~L 266 (332)
T 2ft3_A 206 QAIELED-----LLRYSKLYRLGLGHN-QIRMIENGSLSFLPTLRELHLDNNK-LSRVPA------------GLPDLKLL 266 (332)
T ss_dssp CCCCTTS-----STTCTTCSCCBCCSS-CCCCCCTTGGGGCTTCCEEECCSSC-CCBCCT------------TGGGCTTC
T ss_pred CccCHHH-----hcCCCCCCEEECCCC-cCCcCChhHhhCCCCCCEEECCCCc-CeecCh------------hhhcCccC
Confidence 7776444 267899999999999 666664 47789999999999975 445554 67889999
Q ss_pred ceeeccCcccCceecCCCC-------CCCCCceEEeeCCCCC
Q 044279 226 MVIDLQHLPSLTSICCRAV-------PLPSLKTISVYDCPGL 260 (305)
Q Consensus 226 ~~L~l~~~~~l~~~~~~~~-------~~~~L~~L~l~~c~~l 260 (305)
+.|+++++ .++.++.... ..++|+.|++++++..
T Consensus 267 ~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 267 QVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp CEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred CEEECCCC-CCCccChhHccccccccccccccceEeecCccc
Confidence 99999998 6777654322 2577999999988743
No 28
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.82 E-value=1.4e-19 Score=161.37 Aligned_cols=226 Identities=15% Similarity=0.171 Sum_probs=159.3
Q ss_pred CCcccEEeCCCCCCccccc-hhhhcccccccccccCCccccCCcc-cccccccceeeccccceeeceEEEeecccccccc
Q 044279 1 MHALAVLDLSYNFDLVELP-EAIGKLINLCHLNLSNTKIRELPAG-IKYLKNLKILRLDVFSWFSTELVALHHNFCCATT 78 (305)
Q Consensus 1 l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~ 78 (305)
+++|++|++++| .++.++ ..++++++|++|++++|++..+|.. ++.+++|++|++++|.+. ..
T Consensus 92 l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~--------------~~ 156 (390)
T 3o6n_A 92 AHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE--------------RI 156 (390)
T ss_dssp CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC--------------BC
T ss_pred CCCcCEEECCCC-CCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccC--------------cc
Confidence 578999999999 788775 4589999999999999999999887 589999999999999852 23
Q ss_pred ccccccCccCccceeEEEeecCcccccccccCC------------CccccceEEEEEcCCCcccc-ccCCCccEEEEece
Q 044279 79 VLAGLESLENIHDISITLCFVDTHAFCRFQSSP------------KLQSCVKRLTVASPWFSSLD-FRMDHLETLEIVDC 145 (305)
Q Consensus 79 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~------------~~~~~L~~L~l~~~~~~~~~-~~~~~L~~L~l~~~ 145 (305)
.+..+..+++|+.|+++++.........+..+. .....|+.|+++.+.+..++ ...++|+.|++++|
T Consensus 157 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n 236 (390)
T 3o6n_A 157 EDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHN 236 (390)
T ss_dssp CTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSS
T ss_pred ChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCC
Confidence 345578888888888887332222111111110 01123666666655555555 44567888888888
Q ss_pred ecceecccccCCCcccCCCccceEeeeCCCCCccC--CcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccC
Q 044279 146 SLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDL--KWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLS 223 (305)
Q Consensus 146 ~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (305)
.+++.+ . ...+++|++|++++| .++.. ..+..+++|++|++++|. +..++. ....++
T Consensus 237 ~l~~~~--~-----l~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~------------~~~~l~ 295 (390)
T 3o6n_A 237 NLTDTA--W-----LLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNNR-LVALNL------------YGQPIP 295 (390)
T ss_dssp CCCCCG--G-----GGGCTTCSEEECCSS-CCCEEESGGGTTCSSCCEEECCSSC-CCEEEC------------SSSCCT
T ss_pred CCcccH--H-----HcCCCCccEEECCCC-cCCCcChhHccccccCCEEECCCCc-CcccCc------------ccCCCC
Confidence 766543 1 267888889999888 55554 356778888888888865 444443 445678
Q ss_pred ccceeeccCcccCceecCCCCCCCCCceEEeeCCCCCCCCC
Q 044279 224 NLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKLP 264 (305)
Q Consensus 224 ~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 264 (305)
+|+.|++++| .++.++.....+++|+.|++++|+ +..++
T Consensus 296 ~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~-i~~~~ 334 (390)
T 3o6n_A 296 TLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS-IVTLK 334 (390)
T ss_dssp TCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC-CCCCC
T ss_pred CCCEEECCCC-cceecCccccccCcCCEEECCCCc-cceeC
Confidence 8888888888 677776656677888888887774 55554
No 29
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.82 E-value=1.6e-19 Score=169.74 Aligned_cols=236 Identities=18% Similarity=0.170 Sum_probs=118.6
Q ss_pred cccEEeCCCCCCccccchh-hhcccccccccccCCccccCCcccccccccceeeccccceeec--eEE----------Ee
Q 044279 3 ALAVLDLSYNFDLVELPEA-IGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFST--ELV----------AL 69 (305)
Q Consensus 3 ~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~--~~~----------l~ 69 (305)
+|++|++++| .+..++.. ++++++|++|++++|++..+|..++.+++|++|++++|.+... ..+ +.
T Consensus 255 ~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 333 (606)
T 3t6q_A 255 SVESINLQKH-YFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333 (606)
T ss_dssp EEEEEECTTC-CCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred ceeEEEeecC-ccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence 4566666666 55555433 6666666666666666666666666666666666666654221 000 00
Q ss_pred eccccccccc-cccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc----ccCCCccEEEEec
Q 044279 70 HHNFCCATTV-LAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD----FRMDHLETLEIVD 144 (305)
Q Consensus 70 ~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~L~~L~l~~ 144 (305)
++.+ ...+ ...+..+++|+.|++++ +...............++|++|+++.+.+.... ..+++|+.|++++
T Consensus 334 ~n~~--~~~~~~~~~~~l~~L~~L~l~~--n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 409 (606)
T 3t6q_A 334 GNTK--RLELGTGCLENLENLRELDLSH--DDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAF 409 (606)
T ss_dssp SCSS--CCBCCSSTTTTCTTCCEEECCS--SCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTT
T ss_pred CCCc--ccccchhhhhccCcCCEEECCC--CccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCC
Confidence 0000 1111 12245555555555555 222221100111111233666666644444332 4456666666666
Q ss_pred eecceecccccCCCcccCCCccceEeeeCCCCCccC-C-cCCCCCCCCEEEEeccccccccccccCCCCCcccccccccc
Q 044279 145 CSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDL-K-WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFL 222 (305)
Q Consensus 145 ~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~-~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (305)
|.++....... +..+++|+.|++++| .++.. + .+..+++|++|++++|.......+ ....+..+
T Consensus 410 n~l~~~~~~~~----~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---------~~~~~~~l 475 (606)
T 3t6q_A 410 TRLKVKDAQSP----FQNLHLLKVLNLSHS-LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQ---------KTNSLQTL 475 (606)
T ss_dssp CCEECCTTCCT----TTTCTTCCEEECTTC-CCBTTCTTTTTTCTTCCEEECTTCBCGGGEEC---------SSCGGGGC
T ss_pred CcCCCcccchh----hhCcccCCEEECCCC-ccCCcCHHHHhCCCCCCEEECCCCCCCccccc---------cchhhccC
Confidence 66443322110 245666777777766 44332 2 355667777777777654321111 01235566
Q ss_pred CccceeeccCcccCcee-cCCCCCCCCCceEEeeCCC
Q 044279 223 SNLMVIDLQHLPSLTSI-CCRAVPLPSLKTISVYDCP 258 (305)
Q Consensus 223 ~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~c~ 258 (305)
++|+.|++++| .++.+ +.....+++|+.|++++|.
T Consensus 476 ~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~ 511 (606)
T 3t6q_A 476 GRLEILVLSFC-DLSSIDQHAFTSLKMMNHVDLSHNR 511 (606)
T ss_dssp TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCccEEECCCC-ccCccChhhhccccCCCEEECCCCc
Confidence 66666666666 44444 3334456666666666653
No 30
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.82 E-value=4.2e-19 Score=161.30 Aligned_cols=223 Identities=21% Similarity=0.175 Sum_probs=173.7
Q ss_pred ccEEeCCCCCCccccchhhhcccccccccccCCccccC-CcccccccccceeeccccceeeceEEEeecccccccccccc
Q 044279 4 LAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIREL-PAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAG 82 (305)
Q Consensus 4 L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~ 82 (305)
.+.++.++. .++.+|..+. .++++|++++|++..+ |..++++++|++|++++|.+. ...+..
T Consensus 56 ~~~v~c~~~-~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~--------------~~~~~~ 118 (452)
T 3zyi_A 56 FSKVVCTRR-GLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR--------------QIEVGA 118 (452)
T ss_dssp SCEEECCSS-CCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC--------------EECTTT
T ss_pred CcEEEECCC-CcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC--------------CcChhh
Confidence 356777777 7788887554 6899999999999866 456999999999999999853 334467
Q ss_pred ccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc----ccCCCccEEEEecee-cceecccccCC
Q 044279 83 LESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD----FRMDHLETLEIVDCS-LESINIYFGDQ 157 (305)
Q Consensus 83 l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~L~~L~l~~~~-l~~~~~~~~~~ 157 (305)
+..+++|+.|++++ +....+.. ......++|++|+++.|.++.++ ..+++|+.|++++|+ ++.++...+
T Consensus 119 ~~~l~~L~~L~L~~--n~l~~~~~--~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~-- 192 (452)
T 3zyi_A 119 FNGLASLNTLELFD--NWLTVIPS--GAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAF-- 192 (452)
T ss_dssp TTTCTTCCEEECCS--SCCSBCCT--TTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTT--
T ss_pred ccCcccCCEEECCC--CcCCccCh--hhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhc--
Confidence 88999999999998 43332221 01112345999999977777766 678999999999977 888876543
Q ss_pred CcccCCCccceEeeeCCCCCccCCcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCc
Q 044279 158 GRTYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLT 237 (305)
Q Consensus 158 ~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 237 (305)
..+++|++|++++| .++.++.+..+++|++|++++|.. ..+.+ ..+..+++|+.|+++++ .++
T Consensus 193 ---~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N~l-~~~~~-----------~~~~~l~~L~~L~L~~n-~l~ 255 (452)
T 3zyi_A 193 ---EGLFNLKYLNLGMC-NIKDMPNLTPLVGLEELEMSGNHF-PEIRP-----------GSFHGLSSLKKLWVMNS-QVS 255 (452)
T ss_dssp ---TTCTTCCEEECTTS-CCSSCCCCTTCTTCCEEECTTSCC-SEECG-----------GGGTTCTTCCEEECTTS-CCC
T ss_pred ---cCCCCCCEEECCCC-cccccccccccccccEEECcCCcC-cccCc-----------ccccCccCCCEEEeCCC-cCc
Confidence 78999999999999 888888888999999999999764 44433 36788999999999999 677
Q ss_pred eec-CCCCCCCCCceEEeeCCCCCCCCCCCC
Q 044279 238 SIC-CRAVPLPSLKTISVYDCPGLRKLPLNS 267 (305)
Q Consensus 238 ~~~-~~~~~~~~L~~L~l~~c~~l~~~~~~~ 267 (305)
.++ .....+++|+.|++++| .++.+|...
T Consensus 256 ~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~ 285 (452)
T 3zyi_A 256 LIERNAFDGLASLVELNLAHN-NLSSLPHDL 285 (452)
T ss_dssp EECTTTTTTCTTCCEEECCSS-CCSCCCTTS
T ss_pred eECHHHhcCCCCCCEEECCCC-cCCccChHH
Confidence 664 34567999999999887 677776553
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.82 E-value=4.4e-19 Score=161.24 Aligned_cols=207 Identities=17% Similarity=0.176 Sum_probs=150.2
Q ss_pred CCcccEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeecccccccccc
Q 044279 1 MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVL 80 (305)
Q Consensus 1 l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~ 80 (305)
+++|++|++++| .++.+| .++.+++|++|++++|++..+| ++.+++|++|++++|.+. ..
T Consensus 41 l~~L~~L~Ls~n-~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~---------------~~- 100 (457)
T 3bz5_A 41 LATLTSLDCHNS-SITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLT---------------NL- 100 (457)
T ss_dssp HTTCCEEECCSS-CCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCS---------------CC-
T ss_pred cCCCCEEEccCC-CcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCc---------------ee-
Confidence 468999999999 888887 6899999999999999999885 889999999999999853 22
Q ss_pred ccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc-ccCCCccEEEEecee-cceecccccCCC
Q 044279 81 AGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD-FRMDHLETLEIVDCS-LESINIYFGDQG 158 (305)
Q Consensus 81 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~L~~L~l~~~~-l~~~~~~~~~~~ 158 (305)
.+..+++|+.|++++ +....++ +. ..++|+.|+++.+.++.++ ..+++|+.|++++|. +..++
T Consensus 101 -~~~~l~~L~~L~L~~--N~l~~l~-~~----~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~------- 165 (457)
T 3bz5_A 101 -DVTPLTKLTYLNCDT--NKLTKLD-VS----QNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLD------- 165 (457)
T ss_dssp -CCTTCTTCCEEECCS--SCCSCCC-CT----TCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCC-------
T ss_pred -ecCCCCcCCEEECCC--CcCCeec-CC----CCCcCCEEECCCCccceeccccCCcCCEEECCCCCcccccc-------
Confidence 277888899998888 4333332 22 2234888888866676666 677888888888885 55553
Q ss_pred cccCCCccceEeeeCCCCCccCCcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCce
Q 044279 159 RTYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTS 238 (305)
Q Consensus 159 ~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 238 (305)
+..+++|+.|++++| .++.++ +..+++|+.|++++|... .+ .++.+++|+.|++++| .++.
T Consensus 166 -~~~l~~L~~L~ls~n-~l~~l~-l~~l~~L~~L~l~~N~l~-~~--------------~l~~l~~L~~L~Ls~N-~l~~ 226 (457)
T 3bz5_A 166 -VTPQTQLTTLDCSFN-KITELD-VSQNKLLNRLNCDTNNIT-KL--------------DLNQNIQLTFLDCSSN-KLTE 226 (457)
T ss_dssp -CTTCTTCCEEECCSS-CCCCCC-CTTCTTCCEEECCSSCCS-CC--------------CCTTCTTCSEEECCSS-CCSC
T ss_pred -cccCCcCCEEECCCC-ccceec-cccCCCCCEEECcCCcCC-ee--------------ccccCCCCCEEECcCC-cccc
Confidence 256788888888887 666666 667788888888876532 21 2456677777777777 5666
Q ss_pred ecCCCCCCCCCceEEeeCCCCCCCCC
Q 044279 239 ICCRAVPLPSLKTISVYDCPGLRKLP 264 (305)
Q Consensus 239 ~~~~~~~~~~L~~L~l~~c~~l~~~~ 264 (305)
++ ...+++|+.|+++++ .++.+|
T Consensus 227 ip--~~~l~~L~~L~l~~N-~l~~~~ 249 (457)
T 3bz5_A 227 ID--VTPLTQLTYFDCSVN-PLTELD 249 (457)
T ss_dssp CC--CTTCTTCSEEECCSS-CCSCCC
T ss_pred cC--ccccCCCCEEEeeCC-cCCCcC
Confidence 55 456677777777665 444444
No 32
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.82 E-value=5.6e-19 Score=159.95 Aligned_cols=221 Identities=23% Similarity=0.209 Sum_probs=174.0
Q ss_pred ccEEeCCCCCCccccchhhhcccccccccccCCccccCC-cccccccccceeeccccceeeceEEEeecccccccccccc
Q 044279 4 LAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELP-AGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAG 82 (305)
Q Consensus 4 L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~ 82 (305)
.+.++.++. .++.+|..+. .+++.|++++|++..++ ..+.++++|++|++++|.+. ...+..
T Consensus 45 ~~~v~c~~~-~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~--------------~i~~~~ 107 (440)
T 3zyj_A 45 FSKVICVRK-NLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR--------------TIEIGA 107 (440)
T ss_dssp SCEEECCSC-CCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC--------------EECGGG
T ss_pred CCEEEeCCC-CcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC--------------ccChhh
Confidence 456777777 7888887654 68999999999998776 45899999999999999853 234467
Q ss_pred ccCccCccceeEEEeecCccccc--ccccCCCccccceEEEEEcCCCcccc----ccCCCccEEEEecee-cceeccccc
Q 044279 83 LESLENIHDISITLCFVDTHAFC--RFQSSPKLQSCVKRLTVASPWFSSLD----FRMDHLETLEIVDCS-LESINIYFG 155 (305)
Q Consensus 83 l~~l~~L~~L~l~~~~~~~~~~~--~l~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~L~~L~l~~~~-l~~~~~~~~ 155 (305)
+..+++|+.|++++ +....+. .+... ++|+.|+++.|.++.++ ..+++|+.|++++|+ +..++...
T Consensus 108 ~~~l~~L~~L~L~~--n~l~~~~~~~~~~l----~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~- 180 (440)
T 3zyj_A 108 FNGLANLNTLELFD--NRLTTIPNGAFVYL----SKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGA- 180 (440)
T ss_dssp GTTCSSCCEEECCS--SCCSSCCTTTSCSC----SSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTT-
T ss_pred ccCCccCCEEECCC--CcCCeeCHhHhhcc----ccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcch-
Confidence 88999999999988 4333222 12222 45999999977777766 678999999999977 77777654
Q ss_pred CCCcccCCCccceEeeeCCCCCccCCcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCccc
Q 044279 156 DQGRTYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPS 235 (305)
Q Consensus 156 ~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 235 (305)
+..+++|++|++++| .++.++.+..+++|++|++++|. +..+.+ ..+..+++|+.|+++++ .
T Consensus 181 ----~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-----------~~~~~l~~L~~L~L~~n-~ 242 (440)
T 3zyj_A 181 ----FEGLSNLRYLNLAMC-NLREIPNLTPLIKLDELDLSGNH-LSAIRP-----------GSFQGLMHLQKLWMIQS-Q 242 (440)
T ss_dssp ----TTTCSSCCEEECTTS-CCSSCCCCTTCSSCCEEECTTSC-CCEECT-----------TTTTTCTTCCEEECTTC-C
T ss_pred ----hhcccccCeecCCCC-cCccccccCCCcccCEEECCCCc-cCccCh-----------hhhccCccCCEEECCCC-c
Confidence 378999999999999 88888888899999999999975 444443 36788999999999999 7
Q ss_pred CceecC-CCCCCCCCceEEeeCCCCCCCCCCCC
Q 044279 236 LTSICC-RAVPLPSLKTISVYDCPGLRKLPLNS 267 (305)
Q Consensus 236 l~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~~ 267 (305)
++.++. ....+++|+.|++++| .++.+|...
T Consensus 243 l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~ 274 (440)
T 3zyj_A 243 IQVIERNAFDNLQSLVEINLAHN-NLTLLPHDL 274 (440)
T ss_dssp CCEECTTSSTTCTTCCEEECTTS-CCCCCCTTT
T ss_pred eeEEChhhhcCCCCCCEEECCCC-CCCccChhH
Confidence 777654 3457899999999887 677776543
No 33
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.82 E-value=1.3e-19 Score=175.00 Aligned_cols=91 Identities=16% Similarity=0.077 Sum_probs=45.1
Q ss_pred CccceEeeeCCCCCccCC-cCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCceecCC
Q 044279 164 RNLRHLSVKDCHFMTDLK-WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICCR 242 (305)
Q Consensus 164 ~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 242 (305)
++|+.|++++|.....+| .++.++.|+.|++++|.....+|. .++.+++|+.|++++|.--..+|..
T Consensus 632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~------------~l~~L~~L~~LdLs~N~l~g~ip~~ 699 (768)
T 3rgz_A 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD------------EVGDLRGLNILDLSSNKLDGRIPQA 699 (768)
T ss_dssp BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCG------------GGGGCTTCCEEECCSSCCEECCCGG
T ss_pred ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCCh------------HHhCCCCCCEEECCCCcccCcCChH
Confidence 445555555552211222 344455555555555443333333 5556666666666666322345554
Q ss_pred CCCCCCCceEEeeCCCCCCCCCCC
Q 044279 243 AVPLPSLKTISVYDCPGLRKLPLN 266 (305)
Q Consensus 243 ~~~~~~L~~L~l~~c~~l~~~~~~ 266 (305)
...+++|++|++++|+.-..+|..
T Consensus 700 l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 700 MSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp GGGCCCCSEEECCSSEEEEECCSS
T ss_pred HhCCCCCCEEECcCCcccccCCCc
Confidence 555666666666665444455544
No 34
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.82 E-value=1.6e-19 Score=154.11 Aligned_cols=215 Identities=18% Similarity=0.197 Sum_probs=160.1
Q ss_pred cEEeCCCCCCccccchhhhcccccccccccCCccccCCc-ccccccccceeeccccceeeceEEEeeccccccccccccc
Q 044279 5 AVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPA-GIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGL 83 (305)
Q Consensus 5 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l 83 (305)
+.++.+++ .++.+|..+ .++|++|++++|++..++. .+..+++|++|++++|.+. ...+..+
T Consensus 14 ~~~~c~~~-~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~--------------~~~~~~~ 76 (285)
T 1ozn_A 14 VTTSCPQQ-GLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA--------------RIDAAAF 76 (285)
T ss_dssp CEEECCSS-CCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC--------------EECTTTT
T ss_pred eEEEcCcC-CcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccc--------------eeCHhhc
Confidence 56788887 788888643 4689999999998887764 4888999999999988752 2335678
Q ss_pred cCccCccceeEEEeecC-cccc--cccccCCCccccceEEEEEcCCCcccc----ccCCCccEEEEeceecceecccccC
Q 044279 84 ESLENIHDISITLCFVD-THAF--CRFQSSPKLQSCVKRLTVASPWFSSLD----FRMDHLETLEIVDCSLESINIYFGD 156 (305)
Q Consensus 84 ~~l~~L~~L~l~~~~~~-~~~~--~~l~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~L~~L~l~~~~l~~~~~~~~~ 156 (305)
..+++|+.|++++ +. ...+ ..+... ++|++|+++.+.+..++ ..+++|+.|++++|.++.++....
T Consensus 77 ~~l~~L~~L~l~~--n~~l~~~~~~~~~~l----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~- 149 (285)
T 1ozn_A 77 TGLALLEQLDLSD--NAQLRSVDPATFHGL----GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF- 149 (285)
T ss_dssp TTCTTCCEEECCS--CTTCCCCCTTTTTTC----TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT-
T ss_pred CCccCCCEEeCCC--CCCccccCHHHhcCC----cCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHh-
Confidence 8889999999888 32 2221 222222 34888988866666553 668899999999999887776542
Q ss_pred CCcccCCCccceEeeeCCCCCccCC--cCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcc
Q 044279 157 QGRTYCFRNLRHLSVKDCHFMTDLK--WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLP 234 (305)
Q Consensus 157 ~~~~~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 234 (305)
..+++|++|++++| .++.++ .+..+++|++|++++|.. ..+.+ ..+..+++|+.|+++++
T Consensus 150 ----~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~-----------~~~~~l~~L~~L~l~~n- 211 (285)
T 1ozn_A 150 ----RDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNRV-AHVHP-----------HAFRDLGRLMTLYLFAN- 211 (285)
T ss_dssp ----TTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCC-CEECT-----------TTTTTCTTCCEEECCSS-
T ss_pred ----ccCCCccEEECCCC-cccccCHHHhcCccccCEEECCCCcc-cccCH-----------hHccCcccccEeeCCCC-
Confidence 67899999999998 677665 377889999999999764 33322 26778899999999998
Q ss_pred cCceecCC-CCCCCCCceEEeeCCCCCC
Q 044279 235 SLTSICCR-AVPLPSLKTISVYDCPGLR 261 (305)
Q Consensus 235 ~l~~~~~~-~~~~~~L~~L~l~~c~~l~ 261 (305)
.++.++.. ...+++|+.|++++++...
T Consensus 212 ~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 212 NLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp CCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred cCCcCCHHHcccCcccCEEeccCCCccC
Confidence 67666533 4578999999998886543
No 35
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.82 E-value=1.4e-19 Score=174.65 Aligned_cols=233 Identities=15% Similarity=0.181 Sum_probs=177.2
Q ss_pred CcccEEeCCCCCCcc-ccchhhhcccccccccccCCccc-cCCcccccccccceeeccccceeeceEEEeeccccccccc
Q 044279 2 HALAVLDLSYNFDLV-ELPEAIGKLINLCHLNLSNTKIR-ELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTV 79 (305)
Q Consensus 2 ~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~ 79 (305)
++|++|++++| .+. .+|..++++++|++|++++|++. .+|..++.+++|++|++++|.+ ....
T Consensus 394 ~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l--------------~~~~ 458 (768)
T 3rgz_A 394 NTLQELYLQNN-GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML--------------EGEI 458 (768)
T ss_dssp CCCCEEECCSS-EEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCC--------------CSCC
T ss_pred CCccEEECCCC-ccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcc--------------cCcC
Confidence 57999999999 555 77888999999999999999887 7788899999999999999985 3466
Q ss_pred cccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCc-ccc---ccCCCccEEEEeceecc-eecccc
Q 044279 80 LAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFS-SLD---FRMDHLETLEIVDCSLE-SINIYF 154 (305)
Q Consensus 80 ~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~-~~~---~~~~~L~~L~l~~~~l~-~~~~~~ 154 (305)
+..+..+++|+.|+++.|.........+... ++|+.|+++.|.+. .++ ..+++|+.|++++|.++ .++..+
T Consensus 459 p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l----~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l 534 (768)
T 3rgz_A 459 PQELMYVKTLETLILDFNDLTGEIPSGLSNC----TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 534 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGC----TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGG
T ss_pred CHHHcCCCCceEEEecCCcccCcCCHHHhcC----CCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHH
Confidence 7778888899999988843322223333333 34888888855554 344 67888999999988865 444333
Q ss_pred cCCCcccCCCccceEeeeCCCCCccCC-----------------------------------------------------
Q 044279 155 GDQGRTYCFRNLRHLSVKDCHFMTDLK----------------------------------------------------- 181 (305)
Q Consensus 155 ~~~~~~~~~~~L~~L~L~~~~~l~~~~----------------------------------------------------- 181 (305)
..+++|+.|++++|.....+|
T Consensus 535 ------~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 608 (768)
T 3rgz_A 535 ------GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS 608 (768)
T ss_dssp ------GGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGG
T ss_pred ------cCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccc
Confidence 678889999988884321221
Q ss_pred ------------------cCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCceecCCC
Q 044279 182 ------------------WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICCRA 243 (305)
Q Consensus 182 ------------------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 243 (305)
.+..+++|+.|++++|.....+|. .++.+++|+.|++++|.--..+|...
T Consensus 609 ~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~------------~l~~l~~L~~L~Ls~N~l~g~ip~~l 676 (768)
T 3rgz_A 609 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK------------EIGSMPYLFILNLGHNDISGSIPDEV 676 (768)
T ss_dssp GTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCG------------GGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred cccccccccceecccCchhhhccccccEEECcCCcccccCCH------------HHhccccCCEEeCcCCccCCCCChHH
Confidence 233467899999999876555555 78999999999999994445788888
Q ss_pred CCCCCCceEEeeCCCCCCCCCCCCcccc
Q 044279 244 VPLPSLKTISVYDCPGLRKLPLNSGSAK 271 (305)
Q Consensus 244 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 271 (305)
+.+++|+.|++++|..-..+|..+..++
T Consensus 677 ~~L~~L~~LdLs~N~l~g~ip~~l~~l~ 704 (768)
T 3rgz_A 677 GDLRGLNILDLSSNKLDGRIPQAMSALT 704 (768)
T ss_dssp GGCTTCCEEECCSSCCEECCCGGGGGCC
T ss_pred hCCCCCCEEECCCCcccCcCChHHhCCC
Confidence 8999999999999976668888877664
No 36
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.81 E-value=2.4e-19 Score=162.93 Aligned_cols=163 Identities=15% Similarity=0.139 Sum_probs=100.2
Q ss_pred CCcccEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeecccccccccc
Q 044279 1 MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVL 80 (305)
Q Consensus 1 l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~ 80 (305)
+++|++|++++| .++.+| ++.+++|++|++++|++..+| ++.+++|++|++++|.+.. +
T Consensus 63 l~~L~~L~Ls~n-~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~---------------l- 121 (457)
T 3bz5_A 63 LTGLTKLICTSN-NITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTK---------------L- 121 (457)
T ss_dssp CTTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSC---------------C-
T ss_pred cCCCCEEEccCC-cCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCe---------------e-
Confidence 467888888888 777775 677888888888888877764 7778888888888876532 1
Q ss_pred ccccCccCccceeEEEeecCcccccccccC------------------CCccccceEEEEEcCCCcccc-ccCCCccEEE
Q 044279 81 AGLESLENIHDISITLCFVDTHAFCRFQSS------------------PKLQSCVKRLTVASPWFSSLD-FRMDHLETLE 141 (305)
Q Consensus 81 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~------------------~~~~~~L~~L~l~~~~~~~~~-~~~~~L~~L~ 141 (305)
.+..+++|+.|+++.+ ....++ +... ....++|+.|+++.+.++.++ ..+++|+.|+
T Consensus 122 -~~~~l~~L~~L~l~~N--~l~~l~-l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~l~~l~~L~~L~ 197 (457)
T 3bz5_A 122 -DVSQNPLLTYLNCARN--TLTEID-VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLN 197 (457)
T ss_dssp -CCTTCTTCCEEECTTS--CCSCCC-CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCCCTTCTTCCEEE
T ss_pred -cCCCCCcCCEEECCCC--ccceec-cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceeccccCCCCCEEE
Confidence 1444445555544442 111110 0000 111133666666655555555 5556666666
Q ss_pred EeceecceecccccCCCcccCCCccceEeeeCCCCCccCCcCCCCCCCCEEEEeccc
Q 044279 142 IVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQ 198 (305)
Q Consensus 142 l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~ 198 (305)
+++|.++.++ +..+++|+.|++++| .++.++ +..+++|+.|++++|.
T Consensus 198 l~~N~l~~~~--------l~~l~~L~~L~Ls~N-~l~~ip-~~~l~~L~~L~l~~N~ 244 (457)
T 3bz5_A 198 CDTNNITKLD--------LNQNIQLTFLDCSSN-KLTEID-VTPLTQLTYFDCSVNP 244 (457)
T ss_dssp CCSSCCSCCC--------CTTCTTCSEEECCSS-CCSCCC-CTTCTTCSEEECCSSC
T ss_pred CcCCcCCeec--------cccCCCCCEEECcCC-cccccC-ccccCCCCEEEeeCCc
Confidence 6666655543 255677777777777 666665 6667777777777765
No 37
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.81 E-value=2.8e-19 Score=154.13 Aligned_cols=227 Identities=17% Similarity=0.175 Sum_probs=170.7
Q ss_pred cEEeCCCCCCccccchhhhcccccccccccCCccccCCcc-cccccccceeeccccceeeceEEEeeccccccccccccc
Q 044279 5 AVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAG-IKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGL 83 (305)
Q Consensus 5 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l 83 (305)
+.++.+++ .++.+|..+. ++|++|++++|++..+|.. ++.+++|++|++++|.+.. ....+..+
T Consensus 10 ~~l~c~~~-~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~------------~~~~~~~~ 74 (306)
T 2z66_A 10 TEIRCNSK-GLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF------------KGCCSQSD 74 (306)
T ss_dssp TEEECCSS-CCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCE------------EEEEEHHH
T ss_pred CEEEcCCC-CcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCc------------ccCccccc
Confidence 46788888 8888987543 6899999999999999876 6899999999999998642 22334566
Q ss_pred cCccCccceeEEEeecCcccccc-cccCCCccccceEEEEEcCCCcccc-----ccCCCccEEEEeceecceecccccCC
Q 044279 84 ESLENIHDISITLCFVDTHAFCR-FQSSPKLQSCVKRLTVASPWFSSLD-----FRMDHLETLEIVDCSLESINIYFGDQ 157 (305)
Q Consensus 84 ~~l~~L~~L~l~~~~~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~-----~~~~~L~~L~l~~~~l~~~~~~~~~~ 157 (305)
..+++|+.|++++ +....+.. +... ++|++|+++.+.+..++ ..+++|+.|++++|.++......
T Consensus 75 ~~~~~L~~L~Ls~--n~i~~l~~~~~~l----~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--- 145 (306)
T 2z66_A 75 FGTTSLKYLDLSF--NGVITMSSNFLGL----EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI--- 145 (306)
T ss_dssp HSCSCCCEEECCS--CSEEEEEEEEETC----TTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTT---
T ss_pred ccccccCEEECCC--CccccChhhcCCC----CCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhh---
Confidence 6789999999988 44333332 3333 34999999865554432 67889999999999877666544
Q ss_pred CcccCCCccceEeeeCCCCCcc--C-CcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcc
Q 044279 158 GRTYCFRNLRHLSVKDCHFMTD--L-KWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLP 234 (305)
Q Consensus 158 ~~~~~~~~L~~L~L~~~~~l~~--~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 234 (305)
+..+++|++|++++| .++. . ..+..+++|++|++++|. +..+++ ..+..+++|+.|++++|
T Consensus 146 --~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-----------~~~~~l~~L~~L~L~~N- 209 (306)
T 2z66_A 146 --FNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSP-----------TAFNSLSSLQVLNMSHN- 209 (306)
T ss_dssp --TTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSC-CCEECT-----------TTTTTCTTCCEEECTTS-
T ss_pred --cccCcCCCEEECCCC-ccccccchhHHhhCcCCCEEECCCCC-cCCcCH-----------HHhcCCCCCCEEECCCC-
Confidence 267899999999999 5543 3 367789999999999976 444433 36778999999999999
Q ss_pred cCceecC-CCCCCCCCceEEeeCCCCCCCCCCCCcccc
Q 044279 235 SLTSICC-RAVPLPSLKTISVYDCPGLRKLPLNSGSAK 271 (305)
Q Consensus 235 ~l~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 271 (305)
.++.++. ....+++|+.|++++|......|..+...+
T Consensus 210 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ 247 (306)
T 2z66_A 210 NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP 247 (306)
T ss_dssp CCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCC
T ss_pred ccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhh
Confidence 6766654 345789999999998865555555555543
No 38
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.80 E-value=8.6e-19 Score=159.86 Aligned_cols=242 Identities=19% Similarity=0.229 Sum_probs=139.9
Q ss_pred CCcccEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEE-----Eeeccccc
Q 044279 1 MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELV-----ALHHNFCC 75 (305)
Q Consensus 1 l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-----l~~~~~~~ 75 (305)
+++|++|++++| .+..++. ++++++|++|++++|++..++. ++.+++|++|++++|.+.....+ +....+..
T Consensus 89 l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~ 165 (466)
T 1o6v_A 89 LTKLVDILMNNN-QIADITP-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGN 165 (466)
T ss_dssp CTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEE
T ss_pred cccCCEEECCCC-ccccChh-hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCccCCChhhccCCcccEeecCC
Confidence 578999999999 8887776 8999999999999999888865 88999999999999876432100 00000000
Q ss_pred cccccccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc--ccCCCccEEEEeceecceeccc
Q 044279 76 ATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD--FRMDHLETLEIVDCSLESINIY 153 (305)
Q Consensus 76 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~~ 153 (305)
.......+..+++|+.|++++ +....+..+... ++|++|+++.+.+.... ..+++|+.|++++|.+++++.
T Consensus 166 ~~~~~~~~~~l~~L~~L~l~~--n~l~~~~~l~~l----~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~- 238 (466)
T 1o6v_A 166 QVTDLKPLANLTTLERLDISS--NKVSDISVLAKL----TNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT- 238 (466)
T ss_dssp SCCCCGGGTTCTTCCEEECCS--SCCCCCGGGGGC----TTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-
T ss_pred cccCchhhccCCCCCEEECcC--CcCCCChhhccC----CCCCEEEecCCcccccccccccCCCCEEECCCCCcccchh-
Confidence 001112355666677777666 333333222222 23666666644444333 445556666666555444321
Q ss_pred ccCCCcccCCCccceEeeeCCCCCccCCcCCCCCCCCEEEEeccccccccccccCCC-------CCc--cccccccccCc
Q 044279 154 FGDQGRTYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESP-------GTS--EIEESHHFLSN 224 (305)
Q Consensus 154 ~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-------~~~--~~~~~~~~~~~ 224 (305)
...+++|++|++++| .++.++.+..+++|++|++++|.. ..+++....+ ... .....+..+++
T Consensus 239 ------l~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~ 310 (466)
T 1o6v_A 239 ------LASLTNLTDLDLANN-QISNLAPLSGLTKLTELKLGANQI-SNISPLAGLTALTNLELNENQLEDISPISNLKN 310 (466)
T ss_dssp ------GGGCTTCSEEECCSS-CCCCCGGGTTCTTCSEEECCSSCC-CCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTT
T ss_pred ------hhcCCCCCEEECCCC-ccccchhhhcCCCCCEEECCCCcc-CccccccCCCccCeEEcCCCcccCchhhcCCCC
Confidence 134455555555554 333333344444455555544332 1111110000 000 00012578999
Q ss_pred cceeeccCcccCceecCCCCCCCCCceEEeeCCCCCCCC
Q 044279 225 LMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKL 263 (305)
Q Consensus 225 L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~ 263 (305)
|+.|++++| .++.++. ...+++|+.|++++| .+..+
T Consensus 311 L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~~n-~l~~~ 346 (466)
T 1o6v_A 311 LTYLTLYFN-NISDISP-VSSLTKLQRLFFYNN-KVSDV 346 (466)
T ss_dssp CSEEECCSS-CCSCCGG-GGGCTTCCEEECCSS-CCCCC
T ss_pred CCEEECcCC-cCCCchh-hccCccCCEeECCCC-ccCCc
Confidence 999999999 6666654 568999999999988 55554
No 39
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.80 E-value=2.3e-19 Score=168.77 Aligned_cols=248 Identities=15% Similarity=0.122 Sum_probs=139.2
Q ss_pred CcccEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccceeec---------eEE-Eeec
Q 044279 2 HALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFST---------ELV-ALHH 71 (305)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~---------~~~-l~~~ 71 (305)
++|+.|+++++ .+..+| .+..+++|++|++++|.+..+| .+ .+++|++|++++|..... +.+ +.++
T Consensus 285 ~~L~~L~l~~~-~~~~l~-~l~~~~~L~~L~l~~n~l~~lp-~~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n 360 (606)
T 3vq2_A 285 ANVSAMSLAGV-SIKYLE-DVPKHFKWQSLSIIRCQLKQFP-TL-DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRN 360 (606)
T ss_dssp TTCSEEEEESC-CCCCCC-CCCTTCCCSEEEEESCCCSSCC-CC-CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSS
T ss_pred CCCCEEEecCc-cchhhh-hccccccCCEEEcccccCcccc-cC-CCCccceeeccCCcCccchhhccCCCCCEEECcCC
Confidence 56777777777 666666 5677777777777777777776 44 666677776666632110 000 1111
Q ss_pred cccccccccccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc-----ccCCCccEEEEecee
Q 044279 72 NFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD-----FRMDHLETLEIVDCS 146 (305)
Q Consensus 72 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~-----~~~~~L~~L~l~~~~ 146 (305)
.+......+..+..+++|+.|+++. +....+. ......++|+.|+++.+.+.... ..+++|+.|++++|.
T Consensus 361 ~l~~~~~~~~~~~~~~~L~~L~L~~--n~l~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 435 (606)
T 3vq2_A 361 ALSFSGCCSYSDLGTNSLRHLDLSF--NGAIIMS---ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN 435 (606)
T ss_dssp CEEEEEECCHHHHCCSCCCEEECCS--CSEEEEC---CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSC
T ss_pred ccCCCcchhhhhccCCcccEeECCC--Cccccch---hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCC
Confidence 1111111234445555566555555 2222211 11111233666666643333221 455666666666666
Q ss_pred cceecccccCCCcccCCCccceEeeeCCCCCcc--CC-cCCCCCCCCEEEEeccccccccccccCCCCCccccccccccC
Q 044279 147 LESINIYFGDQGRTYCFRNLRHLSVKDCHFMTD--LK-WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLS 223 (305)
Q Consensus 147 l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~--~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (305)
+....... +..+++|++|++++| .+++ ++ .+..+++|++|++++|... .+++ ..+..++
T Consensus 436 l~~~~~~~-----~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~-----------~~~~~l~ 497 (606)
T 3vq2_A 436 TKIDFDGI-----FLGLTSLNTLKMAGN-SFKDNTLSNVFANTTNLTFLDLSKCQLE-QISW-----------GVFDTLH 497 (606)
T ss_dssp CEECCTTT-----TTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSCCC-EECT-----------TTTTTCT
T ss_pred CCccchhh-----hcCCCCCCEEECCCC-cCCCcchHHhhccCCCCCEEECCCCcCC-ccCh-----------hhhcccc
Confidence 54433322 245667777777776 3333 22 4556677777777776432 2222 2567788
Q ss_pred ccceeeccCcccCcee-cCCCCCCCCCceEEeeCCCCCCCCCCCCccccCcCceEe
Q 044279 224 NLMVIDLQHLPSLTSI-CCRAVPLPSLKTISVYDCPGLRKLPLNSGSAKNSLNAIR 278 (305)
Q Consensus 224 ~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~i~ 278 (305)
+|++|++++| .++.+ +.....+++|+.|++++| .++.+|..+..+++++..++
T Consensus 498 ~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l~ 551 (606)
T 3vq2_A 498 RLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFN 551 (606)
T ss_dssp TCCEEECCSS-CCSCEEGGGTTTCTTCCEEECTTS-CCCCEESCGGGSCTTCCEEE
T ss_pred cCCEEECCCC-cCCCcCHHHccCCCcCCEEECCCC-cCcccCHhHhhhcccCcEEE
Confidence 8888888888 55544 555667888888888777 46777777666554344433
No 40
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.80 E-value=4.4e-18 Score=157.17 Aligned_cols=131 Identities=18% Similarity=0.144 Sum_probs=79.1
Q ss_pred ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCC----cCCCCCCCCEEEEecccccccccccc
Q 044279 132 FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK----WIRCAPNLQFLYVSDCQVLSEIIGTY 207 (305)
Q Consensus 132 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~~ 207 (305)
..+++|+.|++++|.+++..... +..+++|++|++++| .++.++ .+..+++|++|++++|.....++...
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~-----~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~ 394 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFEN-----CGHLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD 394 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTT-----CCCCSSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCS
T ss_pred hhCCcccEEEeECCccChhhhhh-----hccCCCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCCcCCcccccch
Confidence 45667777777777755532222 256677777777777 555422 35567777777777765433244311
Q ss_pred CC--C-------CCcccc-cccccc-CccceeeccCcccCceecCCCCCCCCCceEEeeCCCCCCCCCCC-Cccc
Q 044279 208 ES--P-------GTSEIE-ESHHFL-SNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKLPLN-SGSA 270 (305)
Q Consensus 208 ~~--~-------~~~~~~-~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~ 270 (305)
.. . ....+. .....+ ++|+.|++++| .++.++.....+++|+.|++++| .++.+|.. +...
T Consensus 395 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l 467 (520)
T 2z7x_B 395 CSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRL 467 (520)
T ss_dssp CCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTC
T ss_pred hccCccCCEEECcCCCCCcchhhhhcccCCEEECCCC-cccccchhhhcCCCCCEEECCCC-cCCccCHHHhccC
Confidence 10 0 000000 011122 68888888888 77788876778999999999887 67788876 4443
No 41
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.80 E-value=2.1e-18 Score=162.24 Aligned_cols=58 Identities=24% Similarity=0.339 Sum_probs=32.4
Q ss_pred cccEEeCCCCCCcccc-chhhhcccccccccccCCccccC-Ccccccccccceeeccccce
Q 044279 3 ALAVLDLSYNFDLVEL-PEAIGKLINLCHLNLSNTKIREL-PAGIKYLKNLKILRLDVFSW 61 (305)
Q Consensus 3 ~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~ 61 (305)
++++|++++| .++.+ |..++++++|++|++++|++..+ |..++++++|++|++++|.+
T Consensus 34 ~l~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 93 (606)
T 3t6q_A 34 STECLEFSFN-VLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93 (606)
T ss_dssp TCCEEECTTC-CCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred cCcEEEccCC-ccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcc
Confidence 4556666666 55554 33456666666666666655533 34455566666666665553
No 42
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.79 E-value=6.7e-19 Score=150.19 Aligned_cols=197 Identities=18% Similarity=0.160 Sum_probs=154.3
Q ss_pred CcccEEeCCCCCCccccch-hhhcccccccccccCCccccC-CcccccccccceeeccccceeeceEEEeeccccccccc
Q 044279 2 HALAVLDLSYNFDLVELPE-AIGKLINLCHLNLSNTKIREL-PAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTV 79 (305)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~ 79 (305)
++|++|++++| .++.++. .+.++++|++|++++|.+..+ |..++.+++|++|++++|... ....
T Consensus 32 ~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l-------------~~~~ 97 (285)
T 1ozn_A 32 AASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL-------------RSVD 97 (285)
T ss_dssp TTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC-------------CCCC
T ss_pred CCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCc-------------cccC
Confidence 57999999999 8888874 589999999999999999866 667999999999999999621 2334
Q ss_pred cccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc----ccCCCccEEEEeceecceeccccc
Q 044279 80 LAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD----FRMDHLETLEIVDCSLESINIYFG 155 (305)
Q Consensus 80 ~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~L~~L~l~~~~l~~~~~~~~ 155 (305)
+..+..+++|+.|++.++.........+.. .++|++|+++.+.++.++ ..+++|+.|++++|.++.++....
T Consensus 98 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 173 (285)
T 1ozn_A 98 PATFHGLGRLHTLHLDRCGLQELGPGLFRG----LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAF 173 (285)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCCCTTTTTT----CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred HHHhcCCcCCCEEECCCCcCCEECHhHhhC----CcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHh
Confidence 667889999999999883222111111222 245999999977776665 568899999999999888886543
Q ss_pred CCCcccCCCccceEeeeCCCCCccC--CcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCc
Q 044279 156 DQGRTYCFRNLRHLSVKDCHFMTDL--KWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHL 233 (305)
Q Consensus 156 ~~~~~~~~~~L~~L~L~~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 233 (305)
..+++|++|++++| .++.+ ..+..+++|++|++++|.. ..+++ ..+..+++|+.|+++++
T Consensus 174 -----~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~-----------~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 174 -----RGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFANNL-SALPT-----------EALAPLRALQYLRLNDN 235 (285)
T ss_dssp -----TTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCC-SCCCH-----------HHHTTCTTCCEEECCSS
T ss_pred -----cCccccCEEECCCC-cccccCHhHccCcccccEeeCCCCcC-CcCCH-----------HHcccCcccCEEeccCC
Confidence 67899999999999 56654 3677899999999999764 44443 25678999999999998
Q ss_pred c
Q 044279 234 P 234 (305)
Q Consensus 234 ~ 234 (305)
+
T Consensus 236 ~ 236 (285)
T 1ozn_A 236 P 236 (285)
T ss_dssp C
T ss_pred C
Confidence 4
No 43
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.79 E-value=5.3e-18 Score=158.15 Aligned_cols=130 Identities=15% Similarity=0.114 Sum_probs=79.7
Q ss_pred cCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCC----cCCCCCCCCEEEEeccccccccccccC
Q 044279 133 RMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK----WIRCAPNLQFLYVSDCQVLSEIIGTYE 208 (305)
Q Consensus 133 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~~~ 208 (305)
.+++|+.|++++|.+++..... ...+++|+.|++++| .++.++ .+..+++|++|++++|.....++....
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 424 (562)
T 3a79_B 351 SPSSFTFLNFTQNVFTDSVFQG-----CSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC 424 (562)
T ss_dssp SCCCCCEEECCSSCCCTTTTTT-----CCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCC
T ss_pred CCCCceEEECCCCccccchhhh-----hcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhh
Confidence 4556677777766655432222 256777777777777 555543 356677777777777654332333111
Q ss_pred CC---------CCcccc-cccccc-CccceeeccCcccCceecCCCCCCCCCceEEeeCCCCCCCCCCC-Cccc
Q 044279 209 SP---------GTSEIE-ESHHFL-SNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKLPLN-SGSA 270 (305)
Q Consensus 209 ~~---------~~~~~~-~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~ 270 (305)
.. ....+. ..+..+ ++|+.|++++| .++.++.....+++|+.|++++| .++.+|.. +...
T Consensus 425 ~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l 496 (562)
T 3a79_B 425 AWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASN-QLKSVPDGVFDRL 496 (562)
T ss_dssp CCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSS-CCCCCCTTSTTTC
T ss_pred cCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCC-CCCCCCHHHHhcC
Confidence 00 000010 112233 68999999998 78888887778999999999876 67788877 4444
No 44
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.79 E-value=6.3e-19 Score=165.75 Aligned_cols=203 Identities=17% Similarity=0.107 Sum_probs=143.3
Q ss_pred hcccccccccccCCccccC---CcccccccccceeeccccceeeceEEEeeccccccccccccccCccCccceeEEEeec
Q 044279 23 GKLINLCHLNLSNTKIREL---PAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFV 99 (305)
Q Consensus 23 ~~l~~L~~L~l~~~~l~~l---p~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 99 (305)
..+++|++|++++|.+..+ |..++.+++|++|++++|.+ ...+..+..+++|+.|+++++..
T Consensus 347 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l---------------~~~~~~~~~l~~L~~L~l~~n~l 411 (606)
T 3vq2_A 347 VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA---------------IIMSANFMGLEELQHLDFQHSTL 411 (606)
T ss_dssp CCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSE---------------EEECCCCTTCTTCCEEECTTSEE
T ss_pred ccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcc---------------ccchhhccCCCCCCeeECCCCcc
Confidence 4455555555555555433 44555666666666666653 33557888999999999988322
Q ss_pred Ccccc-cccccCCCccccceEEEEEcCCCcccc----ccCCCccEEEEeceecce--ecccccCCCcccCCCccceEeee
Q 044279 100 DTHAF-CRFQSSPKLQSCVKRLTVASPWFSSLD----FRMDHLETLEIVDCSLES--INIYFGDQGRTYCFRNLRHLSVK 172 (305)
Q Consensus 100 ~~~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~L~~L~l~~~~l~~--~~~~~~~~~~~~~~~~L~~L~L~ 172 (305)
..... ..+.. .++|+.|+++.+.+.... ..+++|+.|++++|.+++ ++..+ ..+++|+.|+++
T Consensus 412 ~~~~~~~~~~~----l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~------~~l~~L~~L~Ls 481 (606)
T 3vq2_A 412 KRVTEFSAFLS----LEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVF------ANTTNLTFLDLS 481 (606)
T ss_dssp ESTTTTTTTTT----CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCC------TTCTTCCEEECT
T ss_pred CCccChhhhhc----cccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhh------ccCCCCCEEECC
Confidence 11111 12222 244999999966555433 678999999999999765 34333 678999999999
Q ss_pred CCCCCccC-C-cCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCceecCCCCCCC-CC
Q 044279 173 DCHFMTDL-K-WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICCRAVPLP-SL 249 (305)
Q Consensus 173 ~~~~l~~~-~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~-~L 249 (305)
+| .++.. + .+..+++|++|++++|......+. .+..+++|+.|++++| .++.++.....++ +|
T Consensus 482 ~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~------------~~~~l~~L~~L~l~~N-~l~~~p~~~~~l~~~L 547 (606)
T 3vq2_A 482 KC-QLEQISWGVFDTLHRLQLLNMSHNNLLFLDSS------------HYNQLYSLSTLDCSFN-RIETSKGILQHFPKSL 547 (606)
T ss_dssp TS-CCCEECTTTTTTCTTCCEEECCSSCCSCEEGG------------GTTTCTTCCEEECTTS-CCCCEESCGGGSCTTC
T ss_pred CC-cCCccChhhhcccccCCEEECCCCcCCCcCHH------------HccCCCcCCEEECCCC-cCcccCHhHhhhcccC
Confidence 99 66554 3 578899999999999865433333 6788999999999999 7889988777787 59
Q ss_pred ceEEeeCCCCCCCCC
Q 044279 250 KTISVYDCPGLRKLP 264 (305)
Q Consensus 250 ~~L~l~~c~~l~~~~ 264 (305)
+.|++++++.....+
T Consensus 548 ~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 548 AFFNLTNNSVACICE 562 (606)
T ss_dssp CEEECCSCCCCCSST
T ss_pred cEEEccCCCcccCCc
Confidence 999999987655443
No 45
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.79 E-value=5.5e-18 Score=156.52 Aligned_cols=91 Identities=15% Similarity=0.101 Sum_probs=49.4
Q ss_pred CCCccceEeeeCCCCCcc--CCcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCce-
Q 044279 162 CFRNLRHLSVKDCHFMTD--LKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTS- 238 (305)
Q Consensus 162 ~~~~L~~L~L~~~~~l~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~- 238 (305)
.+++|++|++++| .+++ ...+..+++|++|++++|.... ++ ..+..++.+++|++|++++| .++.
T Consensus 322 ~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~-l~---------~~~~~~~~l~~L~~L~Ls~N-~l~~~ 389 (520)
T 2z7x_B 322 KISPFLHLDFSNN-LLTDTVFENCGHLTELETLILQMNQLKE-LS---------KIAEMTTQMKSLQQLDISQN-SVSYD 389 (520)
T ss_dssp SCCCCCEEECCSS-CCCTTTTTTCCCCSSCCEEECCSSCCCB-HH---------HHHHHHTTCTTCCEEECCSS-CCBCC
T ss_pred hCCcccEEEeECC-ccChhhhhhhccCCCCCEEEccCCccCc-cc---------cchHHHhhCCCCCEEECCCC-cCCcc
Confidence 3455555555555 3333 1234455556666655544321 11 01124567778888888877 4544
Q ss_pred ecCC-CCCCCCCceEEeeCCCCCCCCC
Q 044279 239 ICCR-AVPLPSLKTISVYDCPGLRKLP 264 (305)
Q Consensus 239 ~~~~-~~~~~~L~~L~l~~c~~l~~~~ 264 (305)
++.. ...+++|+.|++++|..-..+|
T Consensus 390 l~~~~~~~l~~L~~L~Ls~N~l~~~~~ 416 (520)
T 2z7x_B 390 EKKGDCSWTKSLLSLNMSSNILTDTIF 416 (520)
T ss_dssp GGGCSCCCCTTCCEEECCSSCCCGGGG
T ss_pred cccchhccCccCCEEECcCCCCCcchh
Confidence 5543 3456788888887775434433
No 46
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.79 E-value=5.4e-19 Score=171.16 Aligned_cols=242 Identities=16% Similarity=0.166 Sum_probs=133.8
Q ss_pred CCcccEEeCCCCCCccccchhhhcccccccccccCCc-cc--cCCccccccc-------ccceeeccccceeeceEEEee
Q 044279 1 MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTK-IR--ELPAGIKYLK-------NLKILRLDVFSWFSTELVALH 70 (305)
Q Consensus 1 l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~-l~--~lp~~~~~l~-------~L~~L~l~~~~~~~~~~~l~~ 70 (305)
+++|++|++++|...+.+|..++++++|++|++++|+ +. .+|..++.++ +|++|++++|.+
T Consensus 490 L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L--------- 560 (876)
T 4ecn_A 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL--------- 560 (876)
T ss_dssp CTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC---------
T ss_pred CCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC---------
Confidence 4567777777774455667667777777777777775 65 3666666555 777777777663
Q ss_pred ccccccccccc--cccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc---ccCCC-ccEEEEec
Q 044279 71 HNFCCATTVLA--GLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD---FRMDH-LETLEIVD 144 (305)
Q Consensus 71 ~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~-L~~L~l~~ 144 (305)
..++. .+..+++|+.|+++. +....++.+.. .++|+.|+++.|.+..++ ..+++ |+.|++++
T Consensus 561 ------~~ip~~~~l~~L~~L~~L~Ls~--N~l~~lp~~~~----L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~ 628 (876)
T 4ecn_A 561 ------EEFPASASLQKMVKLGLLDCVH--NKVRHLEAFGT----NVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSH 628 (876)
T ss_dssp ------CBCCCHHHHTTCTTCCEEECTT--SCCCBCCCCCT----TSEESEEECCSSCCSCCCTTSCEECTTCCEEECCS
T ss_pred ------CccCChhhhhcCCCCCEEECCC--CCcccchhhcC----CCcceEEECcCCccccchHHHhhccccCCEEECcC
Confidence 23444 455556666665555 22222221111 122555555544343333 33444 55555555
Q ss_pred eecceecccccCC-----------------------Cc--ccCCCccceEeeeCCCCCccCCc--CCCCCCCCEEEEecc
Q 044279 145 CSLESINIYFGDQ-----------------------GR--TYCFRNLRHLSVKDCHFMTDLKW--IRCAPNLQFLYVSDC 197 (305)
Q Consensus 145 ~~l~~~~~~~~~~-----------------------~~--~~~~~~L~~L~L~~~~~l~~~~~--~~~~~~L~~L~l~~~ 197 (305)
|.++.+|..+... .. ....++|+.|++++| .++.++. +..+++|+.|++++|
T Consensus 629 N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N-~L~~lp~~~~~~l~~L~~L~Ls~N 707 (876)
T 4ecn_A 629 NKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN-EIQKFPTELFATGSPISTIILSNN 707 (876)
T ss_dssp SCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS-CCCSCCHHHHHTTCCCSEEECCSC
T ss_pred CCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCC-cCCccCHHHHccCCCCCEEECCCC
Confidence 5544443222100 00 012235666666666 4444431 225667777777775
Q ss_pred ccccccccccCCCCCccccccccccCccceeeccCcccCceecCCCC--CCCCCceEEeeCCCCCCCCCCCCcccc
Q 044279 198 QVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICCRAV--PLPSLKTISVYDCPGLRKLPLNSGSAK 271 (305)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~--~~~~L~~L~l~~c~~l~~~~~~~~~~~ 271 (305)
. +..++..... .......++++|+.|+|++| .++.++.... .+++|+.|++++| .+..+|..+..++
T Consensus 708 ~-L~~ip~~~~~----~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N-~L~~lp~~l~~L~ 776 (876)
T 4ecn_A 708 L-MTSIPENSLK----PKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYN-CFSSFPTQPLNSS 776 (876)
T ss_dssp C-CSCCCTTSSS----CTTSCCTTGGGCCEEECCSS-CCCCCCGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCT
T ss_pred c-CCccChHHhc----cccccccccCCccEEECCCC-CCccchHHhhhccCCCcCEEEeCCC-CCCccchhhhcCC
Confidence 4 3344431110 00001234558999999998 7778877665 7899999999877 5666887777654
No 47
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.78 E-value=2.4e-18 Score=159.88 Aligned_cols=81 Identities=26% Similarity=0.284 Sum_probs=45.1
Q ss_pred CcccEEeCCCCCCccccc-hhhhcccccccccccCCccccCCcc-cccccccceeeccccceeeceEEEeeccccccccc
Q 044279 2 HALAVLDLSYNFDLVELP-EAIGKLINLCHLNLSNTKIRELPAG-IKYLKNLKILRLDVFSWFSTELVALHHNFCCATTV 79 (305)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~ 79 (305)
++|++|++++| .++.++ ..++++++|++|++++|++..+|.. ++.+++|++|++++|.+. ....
T Consensus 50 ~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-------------~~~~ 115 (549)
T 2z81_A 50 ANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ-------------TLGV 115 (549)
T ss_dssp TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCS-------------SSCS
T ss_pred CcccEEECCCC-CcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCccc-------------ccch
Confidence 45555555555 444443 3455566666666666655555443 556666666666665532 1123
Q ss_pred cccccCccCccceeEEE
Q 044279 80 LAGLESLENIHDISITL 96 (305)
Q Consensus 80 ~~~l~~l~~L~~L~l~~ 96 (305)
+..+..+++|+.|++++
T Consensus 116 ~~~~~~l~~L~~L~L~~ 132 (549)
T 2z81_A 116 TSLFPNLTNLQTLRIGN 132 (549)
T ss_dssp SCSCTTCTTCCEEEEEE
T ss_pred hhhhhccCCccEEECCC
Confidence 44566666677766666
No 48
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.78 E-value=1.5e-18 Score=161.26 Aligned_cols=82 Identities=28% Similarity=0.368 Sum_probs=63.0
Q ss_pred CCcccEEeCCCCCCccccchh-hhcccccccccccCCcccc--CCcccccccccceeeccccceeeceEEEeeccccccc
Q 044279 1 MHALAVLDLSYNFDLVELPEA-IGKLINLCHLNLSNTKIRE--LPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCAT 77 (305)
Q Consensus 1 l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~l~~--lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~ 77 (305)
+++|++|++++| .+..++.. ++++++|++|++++|.+.. .|..++.+++|++|++++|.... .
T Consensus 73 l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~-------------~ 138 (549)
T 2z81_A 73 LGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFS-------------E 138 (549)
T ss_dssp CTTCCEEECTTS-CCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC-------------E
T ss_pred cccCCEEECCCC-ccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCcccc-------------c
Confidence 578999999999 88877755 9999999999999999884 46679999999999999987321 1
Q ss_pred cccccccCccCccceeEEE
Q 044279 78 TVLAGLESLENIHDISITL 96 (305)
Q Consensus 78 ~~~~~l~~l~~L~~L~l~~ 96 (305)
.....+..+++|+.|++++
T Consensus 139 ~~~~~~~~l~~L~~L~L~~ 157 (549)
T 2z81_A 139 IRRIDFAGLTSLNELEIKA 157 (549)
T ss_dssp ECTTTTTTCCEEEEEEEEE
T ss_pred cCHhhhhcccccCeeeccC
Confidence 1123455566666666655
No 49
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.78 E-value=7.5e-19 Score=151.67 Aligned_cols=189 Identities=19% Similarity=0.246 Sum_probs=102.4
Q ss_pred hcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeeccccccccccccccCccCccceeEEEeecCcc
Q 044279 23 GKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTH 102 (305)
Q Consensus 23 ~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 102 (305)
..+.+|++|++++|.+..+| .+..+++|++|++++|.+. ..+. +..+++|+.|++++ +...
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~---------------~~~~-~~~l~~L~~L~L~~--n~l~ 98 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQIT---------------DLAP-LKNLTKITELELSG--NPLK 98 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCC---------------CCGG-GTTCCSCCEEECCS--CCCS
T ss_pred HHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCC---------------CChh-HccCCCCCEEEccC--CcCC
Confidence 34445555555555544443 3444555555555554421 1112 44445555555544 2222
Q ss_pred cccccccCCCccccceEEEEEcCCCcccc--ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccC
Q 044279 103 AFCRFQSSPKLQSCVKRLTVASPWFSSLD--FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDL 180 (305)
Q Consensus 103 ~~~~l~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~ 180 (305)
.++.+... ++|+.|+++.+.++.++ ..+++|+.|++++|.++.++. + ..+++|+.|++++| .++++
T Consensus 99 ~~~~~~~l----~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l------~~l~~L~~L~l~~n-~l~~~ 166 (308)
T 1h6u_A 99 NVSAIAGL----QSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-L------AGLTNLQYLSIGNA-QVSDL 166 (308)
T ss_dssp CCGGGTTC----TTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-G------GGCTTCCEEECCSS-CCCCC
T ss_pred CchhhcCC----CCCCEEECCCCCCCCchhhcCCCCCCEEECCCCccCcCcc-c------cCCCCccEEEccCC-cCCCC
Confidence 22222222 12555555544444433 556677777777776655543 1 45677777777777 66666
Q ss_pred CcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCceecCCCCCCCCCceEEeeCCC
Q 044279 181 KWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCP 258 (305)
Q Consensus 181 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~ 258 (305)
+.+..+++|+.|++++|.. ..+++ +..+++|++|++++| .++.++. ...+++|+.|++++++
T Consensus 167 ~~l~~l~~L~~L~l~~n~l-~~~~~-------------l~~l~~L~~L~L~~N-~l~~~~~-l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 167 TPLANLSKLTTLKADDNKI-SDISP-------------LASLPNLIEVHLKNN-QISDVSP-LANTSNLFIVTLTNQT 228 (308)
T ss_dssp GGGTTCTTCCEEECCSSCC-CCCGG-------------GGGCTTCCEEECTTS-CCCBCGG-GTTCTTCCEEEEEEEE
T ss_pred hhhcCCCCCCEEECCCCcc-CcChh-------------hcCCCCCCEEEccCC-ccCcccc-ccCCCCCCEEEccCCe
Confidence 5566677777777777543 22221 456677777777776 5555553 4567777777776663
No 50
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.78 E-value=1.6e-18 Score=144.13 Aligned_cols=107 Identities=19% Similarity=0.162 Sum_probs=72.2
Q ss_pred cCCCcc---EEEEece-ecceecccccCCCcccCCCccc-eEeeeCCCCCccCCc-CCCCCCCCEEEEeccccccccccc
Q 044279 133 RMDHLE---TLEIVDC-SLESINIYFGDQGRTYCFRNLR-HLSVKDCHFMTDLKW-IRCAPNLQFLYVSDCQVLSEIIGT 206 (305)
Q Consensus 133 ~~~~L~---~L~l~~~-~l~~~~~~~~~~~~~~~~~~L~-~L~L~~~~~l~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~ 206 (305)
.+++|+ .|++++| .++.++...+ ..+++|+ .|++++| .++.++. ....++|++|++++|..++.+++
T Consensus 125 ~l~~L~~L~~L~l~~N~~l~~i~~~~~-----~~l~~L~~~L~l~~n-~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~- 197 (239)
T 2xwt_C 125 KVYSTDIFFILEITDNPYMTSIPVNAF-----QGLCNETLTLKLYNN-GFTSVQGYAFNGTKLDAVYLNKNKYLTVIDK- 197 (239)
T ss_dssp TCCBCCSEEEEEEESCTTCCEECTTTT-----TTTBSSEEEEECCSC-CCCEECTTTTTTCEEEEEECTTCTTCCEECT-
T ss_pred cccccccccEEECCCCcchhhcCcccc-----cchhcceeEEEcCCC-CCcccCHhhcCCCCCCEEEcCCCCCcccCCH-
Confidence 344444 8888888 6777775542 5678888 8888887 5566542 22236788888888755555554
Q ss_pred cCCCCCcccccccccc-CccceeeccCcccCceecCCCCCCCCCceEEeeCCCC
Q 044279 207 YESPGTSEIEESHHFL-SNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCPG 259 (305)
Q Consensus 207 ~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~ 259 (305)
..+..+ ++|+.|+++++ .++.++.. .+++|+.|+++++..
T Consensus 198 ----------~~~~~l~~~L~~L~l~~N-~l~~l~~~--~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 198 ----------DAFGGVYSGPSLLDVSQT-SVTALPSK--GLEHLKELIARNTWT 238 (239)
T ss_dssp ----------TTTTTCSBCCSEEECTTC-CCCCCCCT--TCTTCSEEECTTC--
T ss_pred ----------HHhhccccCCcEEECCCC-ccccCChh--HhccCceeeccCccC
Confidence 245667 88888888887 67777654 678888888877653
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.77 E-value=1.5e-18 Score=152.60 Aligned_cols=226 Identities=15% Similarity=0.156 Sum_probs=168.8
Q ss_pred CcccEEeCCCCCCccccchhhhcccccccccccCCccccCCc-ccccccccceeeccccceeeceEEEeecccccccccc
Q 044279 2 HALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPA-GIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVL 80 (305)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~ 80 (305)
+...+.+.+++ .++++|..+. ++|++|++++|++..+|. .+..+++|++|++++|.+. ...+
T Consensus 31 ~~~~~c~~~~~-~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~--------------~~~~ 93 (353)
T 2z80_A 31 DRNGICKGSSG-SLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN--------------TIEE 93 (353)
T ss_dssp CTTSEEECCST-TCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC--------------EECT
T ss_pred CCCeEeeCCCC-Cccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccC--------------ccCH
Confidence 44556788888 8889998654 589999999999998877 5899999999999999852 2334
Q ss_pred ccccCccCccceeEEEeecCcccccc--cccCCCccccceEEEEEcCCCcccc-----ccCCCccEEEEecee-cceecc
Q 044279 81 AGLESLENIHDISITLCFVDTHAFCR--FQSSPKLQSCVKRLTVASPWFSSLD-----FRMDHLETLEIVDCS-LESINI 152 (305)
Q Consensus 81 ~~l~~l~~L~~L~l~~~~~~~~~~~~--l~~~~~~~~~L~~L~l~~~~~~~~~-----~~~~~L~~L~l~~~~-l~~~~~ 152 (305)
..+..+++|+.|++++ +....+.. +... ++|++|+++.+.+..++ ..+++|+.|++++|. ++.++.
T Consensus 94 ~~~~~l~~L~~L~Ls~--n~l~~~~~~~~~~l----~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 167 (353)
T 2z80_A 94 DSFSSLGSLEHLDLSY--NYLSNLSSSWFKPL----SSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR 167 (353)
T ss_dssp TTTTTCTTCCEEECCS--SCCSSCCHHHHTTC----TTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT
T ss_pred hhcCCCCCCCEEECCC--CcCCcCCHhHhCCC----ccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCH
Confidence 5688999999999998 43333222 2233 34999999966666554 578999999999996 777765
Q ss_pred cccCCCcccCCCccceEeeeCCCCCccC--CcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeec
Q 044279 153 YFGDQGRTYCFRNLRHLSVKDCHFMTDL--KWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDL 230 (305)
Q Consensus 153 ~~~~~~~~~~~~~L~~L~L~~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 230 (305)
.. +..+++|++|++++| .++.. ..+..+++|++|++++|. +..++. .....+++|+.|++
T Consensus 168 ~~-----~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~-----------~~~~~~~~L~~L~L 229 (353)
T 2z80_A 168 KD-----FAGLTFLEELEIDAS-DLQSYEPKSLKSIQNVSHLILHMKQ-HILLLE-----------IFVDVTSSVECLEL 229 (353)
T ss_dssp TT-----TTTCCEEEEEEEEET-TCCEECTTTTTTCSEEEEEEEECSC-STTHHH-----------HHHHHTTTEEEEEE
T ss_pred HH-----ccCCCCCCEEECCCC-CcCccCHHHHhccccCCeecCCCCc-cccchh-----------hhhhhcccccEEEC
Confidence 44 267899999999999 55554 367789999999999976 444443 13446889999999
Q ss_pred cCcccCceec--------------------------------CCCCCCCCCceEEeeCCCCCCCCCCCC-ccc
Q 044279 231 QHLPSLTSIC--------------------------------CRAVPLPSLKTISVYDCPGLRKLPLNS-GSA 270 (305)
Q Consensus 231 ~~~~~l~~~~--------------------------------~~~~~~~~L~~L~l~~c~~l~~~~~~~-~~~ 270 (305)
+++ .++.++ .....+++|+.|++++| .++.+|.++ ...
T Consensus 230 ~~n-~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l 300 (353)
T 2z80_A 230 RDT-DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRL 300 (353)
T ss_dssp ESC-BCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTC
T ss_pred CCC-ccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcC
Confidence 887 444322 12246789999999887 677888775 444
No 52
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.77 E-value=1.6e-18 Score=150.29 Aligned_cols=219 Identities=14% Similarity=0.159 Sum_probs=169.6
Q ss_pred ccEEeCCCCCCccccch-hhhcccccccccccCCccccCC-cccccccccceeeccccceeeceEEEeeccccccccccc
Q 044279 4 LAVLDLSYNFDLVELPE-AIGKLINLCHLNLSNTKIRELP-AGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLA 81 (305)
Q Consensus 4 L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~ 81 (305)
++..+++.+ .+...+. .+..+++|++|++++|++..++ ..++.+++|++|++++|.+.. .+.
T Consensus 12 l~i~~ls~~-~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~---------------~~~ 75 (317)
T 3o53_A 12 YKIEKVTDS-SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE---------------TLD 75 (317)
T ss_dssp EEEESCCTT-THHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEE---------------EEE
T ss_pred eeEeecccc-chhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCc---------------chh
Confidence 455666666 5554443 3567789999999999999776 469999999999999998532 222
Q ss_pred cccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc-ccCCCccEEEEeceecceecccccCCCcc
Q 044279 82 GLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD-FRMDHLETLEIVDCSLESINIYFGDQGRT 160 (305)
Q Consensus 82 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 160 (305)
+..+++|+.|++++ +... .+... ++|+.|+++.+.+..++ ..+++|+.|++++|.++.++... +
T Consensus 76 -~~~l~~L~~L~Ls~--n~l~---~l~~~----~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~-----~ 140 (317)
T 3o53_A 76 -LESLSTLRTLDLNN--NYVQ---ELLVG----PSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLD-----E 140 (317)
T ss_dssp -ETTCTTCCEEECCS--SEEE---EEEEC----TTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBC-----T
T ss_pred -hhhcCCCCEEECcC--Cccc---cccCC----CCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchh-----h
Confidence 88899999999988 3332 22222 45999999977787777 66889999999999988776544 2
Q ss_pred cCCCccceEeeeCCCCCccCC--cC-CCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCc
Q 044279 161 YCFRNLRHLSVKDCHFMTDLK--WI-RCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLT 237 (305)
Q Consensus 161 ~~~~~L~~L~L~~~~~l~~~~--~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 237 (305)
..+++|++|++++| .++.++ .+ ..+++|++|++++|. +..++. ...+++|++|++++| .++
T Consensus 141 ~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~-------------~~~l~~L~~L~Ls~N-~l~ 204 (317)
T 3o53_A 141 GCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNF-IYDVKG-------------QVVFAKLKTLDLSSN-KLA 204 (317)
T ss_dssp GGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSC-CCEEEC-------------CCCCTTCCEEECCSS-CCC
T ss_pred hccCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCCc-Cccccc-------------ccccccCCEEECCCC-cCC
Confidence 67899999999999 666642 33 468999999999976 444432 235899999999999 888
Q ss_pred eecCCCCCCCCCceEEeeCCCCCCCCCCCCccc
Q 044279 238 SICCRAVPLPSLKTISVYDCPGLRKLPLNSGSA 270 (305)
Q Consensus 238 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 270 (305)
.++.....+++|+.|++++| .++.+|..+...
T Consensus 205 ~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l 236 (317)
T 3o53_A 205 FMGPEFQSAAGVTWISLRNN-KLVLIEKALRFS 236 (317)
T ss_dssp EECGGGGGGTTCSEEECTTS-CCCEECTTCCCC
T ss_pred cchhhhcccCcccEEECcCC-cccchhhHhhcC
Confidence 88777778999999999887 777888877655
No 53
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.77 E-value=3.6e-17 Score=152.54 Aligned_cols=93 Identities=16% Similarity=0.082 Sum_probs=53.1
Q ss_pred CCCccceEeeeCCCCCcc-C-CcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCce-
Q 044279 162 CFRNLRHLSVKDCHFMTD-L-KWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTS- 238 (305)
Q Consensus 162 ~~~~L~~L~L~~~~~l~~-~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~- 238 (305)
.+++|++|++++| .+++ . ..+..+++|++|++++|. +..++. .+..+..+++|+.|++++| .++.
T Consensus 351 ~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~---------~~~~~~~l~~L~~L~l~~N-~l~~~ 418 (562)
T 3a79_B 351 SPSSFTFLNFTQN-VFTDSVFQGCSTLKRLQTLILQRNG-LKNFFK---------VALMTKNMSSLETLDVSLN-SLNSH 418 (562)
T ss_dssp SCCCCCEEECCSS-CCCTTTTTTCCSCSSCCEEECCSSC-CCBTTH---------HHHTTTTCTTCCEEECTTS-CCBSC
T ss_pred CCCCceEEECCCC-ccccchhhhhcccCCCCEEECCCCC-cCCccc---------chhhhcCCCCCCEEECCCC-cCCCc
Confidence 4556666666666 4433 2 245566666666666654 222211 1124567778888888887 4544
Q ss_pred ecCC-CCCCCCCceEEeeCCCCCCCCCCC
Q 044279 239 ICCR-AVPLPSLKTISVYDCPGLRKLPLN 266 (305)
Q Consensus 239 ~~~~-~~~~~~L~~L~l~~c~~l~~~~~~ 266 (305)
++.. ...+++|+.|++++|..-..+|..
T Consensus 419 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 447 (562)
T 3a79_B 419 AYDRTCAWAESILVLNLSSNMLTGSVFRC 447 (562)
T ss_dssp CSSCCCCCCTTCCEEECCSSCCCGGGGSS
T ss_pred cChhhhcCcccCCEEECCCCCCCcchhhh
Confidence 5543 345678888888777543444433
No 54
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.77 E-value=9.5e-18 Score=141.99 Aligned_cols=196 Identities=20% Similarity=0.204 Sum_probs=130.7
Q ss_pred cccEEeCCCCCCccccchhhhcccccccccccCCccccCCc-ccccccccceeeccccceeeceEEEeeccccccccccc
Q 044279 3 ALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPA-GIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLA 81 (305)
Q Consensus 3 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~ 81 (305)
..+.++++++ .++.+|..+. .++++|++++|++..+|. .+..+++|++|++++|.+ ..++.
T Consensus 17 ~~~~l~~~~~-~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l---------------~~i~~ 78 (270)
T 2o6q_A 17 NKNSVDCSSK-KLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL---------------QTLPA 78 (270)
T ss_dssp TTTEEECTTS-CCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCC---------------SCCCT
T ss_pred CCCEEEccCC-CCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCcc---------------CeeCh
Confidence 4567788887 7777776443 567888888888777665 477788888888888764 23332
Q ss_pred -cccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCccccccCCCccEEEEeceecceecccccCCCcc
Q 044279 82 -GLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRT 160 (305)
Q Consensus 82 -~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 160 (305)
.+..+++|+.|+++. +....+. .. ....+++|+.|++++|.++.++...+
T Consensus 79 ~~~~~l~~L~~L~l~~--n~l~~~~---~~-------------------~~~~l~~L~~L~l~~n~l~~~~~~~~----- 129 (270)
T 2o6q_A 79 GIFKELKNLETLWVTD--NKLQALP---IG-------------------VFDQLVNLAELRLDRNQLKSLPPRVF----- 129 (270)
T ss_dssp TTTSSCTTCCEEECCS--SCCCCCC---TT-------------------TTTTCSSCCEEECCSSCCCCCCTTTT-----
T ss_pred hhhcCCCCCCEEECCC--CcCCcCC---Hh-------------------HcccccCCCEEECCCCccCeeCHHHh-----
Confidence 346677777777766 2221111 00 00346778888888877777665442
Q ss_pred cCCCccceEeeeCCCCCccCC--cCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCce
Q 044279 161 YCFRNLRHLSVKDCHFMTDLK--WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTS 238 (305)
Q Consensus 161 ~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 238 (305)
..+++|++|++++| .++.++ .+..+++|++|++++|. +..+++ ..+..+++|++|++++| .++.
T Consensus 130 ~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~-----------~~~~~l~~L~~L~L~~N-~l~~ 195 (270)
T 2o6q_A 130 DSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPE-----------GAFDKLTELKTLKLDNN-QLKR 195 (270)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCT-----------TTTTTCTTCCEEECCSS-CCSC
T ss_pred CcCcCCCEEECCCC-cCCccCHhHccCCcccceeEecCCc-CcEeCh-----------hHhccCCCcCEEECCCC-cCCc
Confidence 56788888888888 666654 36677888888888865 444433 24567788888888887 6666
Q ss_pred ecCC-CCCCCCCceEEeeCCCC
Q 044279 239 ICCR-AVPLPSLKTISVYDCPG 259 (305)
Q Consensus 239 ~~~~-~~~~~~L~~L~l~~c~~ 259 (305)
++.. ...+++|+.|++++++.
T Consensus 196 ~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 196 VPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSCB
T ss_pred CCHHHhccccCCCEEEecCCCe
Confidence 6654 34678888888877753
No 55
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.77 E-value=1.6e-17 Score=161.90 Aligned_cols=61 Identities=31% Similarity=0.386 Sum_probs=36.6
Q ss_pred CCcccEEeCCCCCCcccc-chhhhcccccccccccCCccccC-Ccccccccccceeeccccce
Q 044279 1 MHALAVLDLSYNFDLVEL-PEAIGKLINLCHLNLSNTKIREL-PAGIKYLKNLKILRLDVFSW 61 (305)
Q Consensus 1 l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~ 61 (305)
+++|++|++++|.....+ |..++++++|++|++++|++..+ |..++.+++|++|++++|.+
T Consensus 47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l 109 (844)
T 3j0a_A 47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGL 109 (844)
T ss_dssp CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCC
T ss_pred cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCC
Confidence 345666666666444455 34466666666666666666543 45566666666666666654
No 56
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.77 E-value=1.4e-17 Score=162.43 Aligned_cols=82 Identities=23% Similarity=0.306 Sum_probs=64.2
Q ss_pred CCcccEEeCCCCCCcccc-chhhhcccccccccccCCcccc-CCcc--cccccccceeeccccceeeceEEEeecccccc
Q 044279 1 MHALAVLDLSYNFDLVEL-PEAIGKLINLCHLNLSNTKIRE-LPAG--IKYLKNLKILRLDVFSWFSTELVALHHNFCCA 76 (305)
Q Consensus 1 l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~l~~-lp~~--~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~ 76 (305)
+++|++|++++| .+..+ |..++++++|++|++++|++.. +|.. ++.+++|++|++++|.+..
T Consensus 72 L~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~------------- 137 (844)
T 3j0a_A 72 LPNLRILDLGSS-KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRS------------- 137 (844)
T ss_dssp CTTCCEEECTTC-CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCC-------------
T ss_pred CCCCCEEECCCC-cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccc-------------
Confidence 578999999999 77766 6779999999999999998874 5554 8899999999999998532
Q ss_pred ccccccccCccCccceeEEE
Q 044279 77 TTVLAGLESLENIHDISITL 96 (305)
Q Consensus 77 ~~~~~~l~~l~~L~~L~l~~ 96 (305)
......+.++++|+.|++++
T Consensus 138 ~~~~~~~~~L~~L~~L~Ls~ 157 (844)
T 3j0a_A 138 LYLHPSFGKLNSLKSIDFSS 157 (844)
T ss_dssp CCCCGGGGTCSSCCEEEEES
T ss_pred cccchhHhhCCCCCEEECCC
Confidence 12224566777777777766
No 57
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.77 E-value=1.5e-18 Score=157.57 Aligned_cols=232 Identities=16% Similarity=0.155 Sum_probs=107.2
Q ss_pred CcccEEeCCCCCCccccchhhhcccccccccccCCccc-cCCccccccccc-------------ceeeccccceeec---
Q 044279 2 HALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIR-ELPAGIKYLKNL-------------KILRLDVFSWFST--- 64 (305)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L-------------~~L~l~~~~~~~~--- 64 (305)
.+|++|++++| .++++|+.++++++|++|++++|++. .+|..++.+.+| ++|++++|.+..+
T Consensus 11 ~~L~~L~l~~n-~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~ 89 (454)
T 1jl5_A 11 TFLQEPLRHSS-NLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL 89 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC
T ss_pred ccchhhhcccC-chhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC
Confidence 47899999999 77999999999999999999999876 888888888875 7777777764321
Q ss_pred ----eEE-EeeccccccccccccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc--ccCCCc
Q 044279 65 ----ELV-ALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD--FRMDHL 137 (305)
Q Consensus 65 ----~~~-l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~L 137 (305)
+.+ +.++.++ .++. ..++|+.|++++ +....++. ...+|++|+++.+.++.++ ..+++|
T Consensus 90 ~~~L~~L~l~~n~l~---~lp~---~~~~L~~L~l~~--n~l~~l~~------~~~~L~~L~L~~n~l~~lp~~~~l~~L 155 (454)
T 1jl5_A 90 PPHLESLVASCNSLT---ELPE---LPQSLKSLLVDN--NNLKALSD------LPPLLEYLGVSNNQLEKLPELQNSSFL 155 (454)
T ss_dssp CTTCSEEECCSSCCS---SCCC---CCTTCCEEECCS--SCCSCCCS------CCTTCCEEECCSSCCSSCCCCTTCTTC
T ss_pred cCCCCEEEccCCcCC---cccc---ccCCCcEEECCC--CccCcccC------CCCCCCEEECcCCCCCCCcccCCCCCC
Confidence 000 1111110 0111 113444444444 21111111 1134666666644444444 555666
Q ss_pred cEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCCcCCCCCCCCEEEEeccccccccccccCCC-------
Q 044279 138 ETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESP------- 210 (305)
Q Consensus 138 ~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~------- 210 (305)
+.|++++|.++.++ ...++|++|++++| .++.++.+..+++|++|++++|.. ..++......
T Consensus 156 ~~L~l~~N~l~~lp---------~~~~~L~~L~L~~n-~l~~l~~~~~l~~L~~L~l~~N~l-~~l~~~~~~L~~L~l~~ 224 (454)
T 1jl5_A 156 KIIDVDNNSLKKLP---------DLPPSLEFIAAGNN-QLEELPELQNLPFLTAIYADNNSL-KKLPDLPLSLESIVAGN 224 (454)
T ss_dssp CEEECCSSCCSCCC---------CCCTTCCEEECCSS-CCSSCCCCTTCTTCCEEECCSSCC-SSCCCCCTTCCEEECCS
T ss_pred CEEECCCCcCcccC---------CCcccccEEECcCC-cCCcCccccCCCCCCEEECCCCcC-CcCCCCcCcccEEECcC
Confidence 66666666655544 22346666666666 555555566667777777776543 2222100000
Q ss_pred -CCccccccccccCccceeeccCcccCceecCCCCCCCCCceEEeeCCCCCCCCCC
Q 044279 211 -GTSEIEESHHFLSNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKLPL 265 (305)
Q Consensus 211 -~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 265 (305)
.-..++ .++.+++|++|++++| .++.++. .+++|+.|++++| .+..+|.
T Consensus 225 n~l~~lp-~~~~l~~L~~L~l~~N-~l~~l~~---~~~~L~~L~l~~N-~l~~l~~ 274 (454)
T 1jl5_A 225 NILEELP-ELQNLPFLTTIYADNN-LLKTLPD---LPPSLEALNVRDN-YLTDLPE 274 (454)
T ss_dssp SCCSSCC-CCTTCTTCCEEECCSS-CCSSCCS---CCTTCCEEECCSS-CCSCCCC
T ss_pred CcCCccc-ccCCCCCCCEEECCCC-cCCcccc---cccccCEEECCCC-cccccCc
Confidence 000112 2445666666666665 4444432 2355666666554 3444443
No 58
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.77 E-value=5.2e-18 Score=159.09 Aligned_cols=217 Identities=19% Similarity=0.181 Sum_probs=108.4
Q ss_pred CcccEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccceeece-------EE-Eeeccc
Q 044279 2 HALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTE-------LV-ALHHNF 73 (305)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~-------~~-l~~~~~ 73 (305)
++|++|++++| .++.+|. .+++|++|++++|+++.+|. .+++|++|++++|.+..+. .+ +.++.+
T Consensus 61 ~~L~~L~L~~N-~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~~l~~L~~L~L~~N~l 133 (622)
T 3g06_A 61 AHITTLVIPDN-NLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQL 133 (622)
T ss_dssp TTCSEEEECSC-CCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCCCCTTCCEEECCSSCC
T ss_pred CCCcEEEecCC-CCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCCCCCCcCEEECCCCCC
Confidence 46777888877 6777765 56777777777777777765 5677777777777643210 00 111111
Q ss_pred cccccccccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCccccccCCCccEEEEeceecceeccc
Q 044279 74 CCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINIY 153 (305)
Q Consensus 74 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 153 (305)
..++. .+++|+.|+++. +....++. ...+|+.|+++.|.++.++..+++|+.|++++|.++.++..
T Consensus 134 ---~~lp~---~l~~L~~L~Ls~--N~l~~l~~------~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~~ 199 (622)
T 3g06_A 134 ---TSLPV---LPPGLQELSVSD--NQLASLPA------LPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTL 199 (622)
T ss_dssp ---SCCCC---CCTTCCEEECCS--SCCSCCCC------CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCC
T ss_pred ---CcCCC---CCCCCCEEECcC--CcCCCcCC------ccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCCCc
Confidence 11111 125556666555 22222211 11224444444333333333344555555555554443311
Q ss_pred ccCCCc-----------ccCCCccceEeeeCCCCCccCCcCCCCCCCCEEEEeccccccccccccCCCCCcccccccccc
Q 044279 154 FGDQGR-----------TYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFL 222 (305)
Q Consensus 154 ~~~~~~-----------~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (305)
...... ...+++|+.|++++| .++.++ ..+++|+.|++++|. +..++. .+
T Consensus 200 ~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N-~L~~lp--~~l~~L~~L~Ls~N~-L~~lp~---------------~~ 260 (622)
T 3g06_A 200 PSELYKLWAYNNRLTSLPALPSGLKELIVSGN-RLTSLP--VLPSELKELMVSGNR-LTSLPM---------------LP 260 (622)
T ss_dssp CTTCCEEECCSSCCSSCCCCCTTCCEEECCSS-CCSCCC--CCCTTCCEEECCSSC-CSCCCC---------------CC
T ss_pred cchhhEEECcCCcccccCCCCCCCCEEEccCC-ccCcCC--CCCCcCcEEECCCCC-CCcCCc---------------cc
Confidence 000000 012244555555554 444443 234455555555543 222211 45
Q ss_pred CccceeeccCcccCceecCCCCCCCCCceEEeeCCCC
Q 044279 223 SNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCPG 259 (305)
Q Consensus 223 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~ 259 (305)
++|+.|++++| .++.++.....+++|+.|++++|+.
T Consensus 261 ~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 261 SGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp TTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCC
T ss_pred ccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCC
Confidence 66777777776 5666665556677777777776653
No 59
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.77 E-value=3.6e-18 Score=159.32 Aligned_cols=223 Identities=16% Similarity=0.170 Sum_probs=130.5
Q ss_pred CcccEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeeccccccccccc
Q 044279 2 HALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLA 81 (305)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~ 81 (305)
++|++|++++| .+.++|..+..+ +|++|++++|.+..+|. ..+++|++|++.+|... ....
T Consensus 282 ~~L~~L~l~~~-~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~n~~~---------------~~~~ 342 (570)
T 2z63_A 282 TNVSSFSLVSV-TIERVKDFSYNF-GWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGG---------------NAFS 342 (570)
T ss_dssp TTCSEEEEESC-EECSCCBCCSCC-CCSEEEEESCBCSSCCB--CBCSSCCEEEEESCBSC---------------CBCC
T ss_pred CcccEEEecCc-cchhhhhhhccC-CccEEeeccCcccccCc--ccccccCEEeCcCCccc---------------cccc
Confidence 34555555555 444555545554 55555555555555443 34455555555555421 1111
Q ss_pred cccCccCccceeEEEeecCcccc----cccccCCCccccceEEEEEcCCCcccc---ccCCCccEEEEeceecceecc-c
Q 044279 82 GLESLENIHDISITLCFVDTHAF----CRFQSSPKLQSCVKRLTVASPWFSSLD---FRMDHLETLEIVDCSLESINI-Y 153 (305)
Q Consensus 82 ~l~~l~~L~~L~l~~~~~~~~~~----~~l~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~L~~L~l~~~~l~~~~~-~ 153 (305)
. ..+++|+.|+++. +..... ..+... ++|+.|+++.+.+...+ ..+++|+.|++++|.+...+. .
T Consensus 343 ~-~~~~~L~~L~l~~--n~l~~~~~~~~~~~~~----~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 415 (570)
T 2z63_A 343 E-VDLPSLEFLDLSR--NGLSFKGCCSQSDFGT----TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFS 415 (570)
T ss_dssp C-CBCTTCCEEECCS--SCCBEEEEEEHHHHTC----SCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSC
T ss_pred c-ccCCCCCEEeCcC--CccCcccccccccccc----CccCEEECCCCccccccccccccCCCCEEEccCCccccccchh
Confidence 1 5566677776665 322221 112222 23777777755554444 556777777777777555432 1
Q ss_pred ccCCCcccCCCccceEeeeCCCCCccC-C-cCCCCCCCCEEEEecccccc-ccccccCCCCCccccccccccCccceeec
Q 044279 154 FGDQGRTYCFRNLRHLSVKDCHFMTDL-K-WIRCAPNLQFLYVSDCQVLS-EIIGTYESPGTSEIEESHHFLSNLMVIDL 230 (305)
Q Consensus 154 ~~~~~~~~~~~~L~~L~L~~~~~l~~~-~-~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 230 (305)
. +..+++|++|++++| .+... + .+..+++|++|++++|.... .++ ..+..+++|+.|++
T Consensus 416 ~-----~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p------------~~~~~l~~L~~L~l 477 (570)
T 2z63_A 416 V-----FLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP------------DIFTELRNLTFLDL 477 (570)
T ss_dssp T-----TTTCTTCCEEECTTS-CCEECCTTTTTTCTTCCEEECTTCEEGGGEEC------------SCCTTCTTCCEEEC
T ss_pred h-----hhcCCCCCEEeCcCC-cccccchhhhhcCCcCcEEECcCCcCccccch------------hhhhcccCCCEEEC
Confidence 2 256777888888877 44432 2 45677888888888876432 233 36778899999999
Q ss_pred cCcccCcee-cCCCCCCCCCceEEeeCCCCCCCCCCC-Cccc
Q 044279 231 QHLPSLTSI-CCRAVPLPSLKTISVYDCPGLRKLPLN-SGSA 270 (305)
Q Consensus 231 ~~~~~l~~~-~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~ 270 (305)
++| .++.+ +.....+++|+.|++++| .+..+|.. +...
T Consensus 478 ~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l 517 (570)
T 2z63_A 478 SQC-QLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRL 517 (570)
T ss_dssp TTS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTC
T ss_pred CCC-ccccCChhhhhcccCCCEEeCCCC-cCCCCCHHHhhcc
Confidence 998 66665 555667899999999887 55655543 4433
No 60
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.76 E-value=4.5e-18 Score=158.66 Aligned_cols=94 Identities=22% Similarity=0.244 Sum_probs=49.5
Q ss_pred CCcccEEeCCCCCCccccc-hhhhcccccccccccCCccccCC-cccccccccceeeccccceeeceE--E---------
Q 044279 1 MHALAVLDLSYNFDLVELP-EAIGKLINLCHLNLSNTKIRELP-AGIKYLKNLKILRLDVFSWFSTEL--V--------- 67 (305)
Q Consensus 1 l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~--~--------- 67 (305)
+++|++|++++| .++.++ ..++++++|++|++++|++..+| ..++.+++|++|++++|.+..+.. +
T Consensus 51 l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 129 (570)
T 2z63_A 51 FPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129 (570)
T ss_dssp CSSCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEE
T ss_pred CCCceEEECCCC-cCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEE
Confidence 355666666666 555554 33566666666666666655443 335555555655555554432200 0
Q ss_pred -EeeccccccccccccccCccCccceeEEE
Q 044279 68 -ALHHNFCCATTVLAGLESLENIHDISITL 96 (305)
Q Consensus 68 -l~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 96 (305)
+.++.+. ...++..+.++++|+.|++++
T Consensus 130 ~L~~n~l~-~~~lp~~~~~l~~L~~L~l~~ 158 (570)
T 2z63_A 130 NVAHNLIQ-SFKLPEYFSNLTNLEHLDLSS 158 (570)
T ss_dssp ECCSSCCC-CCCCCGGGGGCTTCCEEECTT
T ss_pred ecCCCccc-eecChhhhcccCCCCEEeCcC
Confidence 1111110 112456677777777777765
No 61
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.76 E-value=5.6e-18 Score=146.19 Aligned_cols=192 Identities=18% Similarity=0.262 Sum_probs=156.9
Q ss_pred CCcccEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeecccccccccc
Q 044279 1 MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVL 80 (305)
Q Consensus 1 l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~ 80 (305)
+++|++|+++++ .++.+| .+..+++|++|++++|.+..++. +..+++|++|++++|.+. . .
T Consensus 40 l~~L~~L~l~~~-~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~---------------~-~ 100 (308)
T 1h6u_A 40 LDGITTLSAFGT-GVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLK---------------N-V 100 (308)
T ss_dssp HHTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCS---------------C-C
T ss_pred cCCcCEEEeeCC-CccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCC---------------C-c
Confidence 357999999999 888887 58999999999999999998877 999999999999999853 2 2
Q ss_pred ccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc--ccCCCccEEEEeceecceecccccCCC
Q 044279 81 AGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD--FRMDHLETLEIVDCSLESINIYFGDQG 158 (305)
Q Consensus 81 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~ 158 (305)
..+..+++|+.|++++ +....+..+... ++|+.|+++.+.++.++ ..+++|+.|++++|.+++++. +
T Consensus 101 ~~~~~l~~L~~L~l~~--n~l~~~~~l~~l----~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l---- 169 (308)
T 1h6u_A 101 SAIAGLQSIKTLDLTS--TQITDVTPLAGL----SNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-L---- 169 (308)
T ss_dssp GGGTTCTTCCEEECTT--SCCCCCGGGTTC----TTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-G----
T ss_pred hhhcCCCCCCEEECCC--CCCCCchhhcCC----CCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChh-h----
Confidence 4688999999999988 444444443333 34999999977777766 788999999999999887764 2
Q ss_pred cccCCCccceEeeeCCCCCccCCcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCce
Q 044279 159 RTYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTS 238 (305)
Q Consensus 159 ~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 238 (305)
..+++|+.|++++| .+++++.+..+++|++|++++|.. ..++ .+..+++|+.|+++++ .++.
T Consensus 170 --~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~N~l-~~~~-------------~l~~l~~L~~L~l~~N-~i~~ 231 (308)
T 1h6u_A 170 --ANLSKLTTLKADDN-KISDISPLASLPNLIEVHLKNNQI-SDVS-------------PLANTSNLFIVTLTNQ-TITN 231 (308)
T ss_dssp --TTCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECTTSCC-CBCG-------------GGTTCTTCCEEEEEEE-EEEC
T ss_pred --cCCCCCCEEECCCC-ccCcChhhcCCCCCCEEEccCCcc-Cccc-------------cccCCCCCCEEEccCC-eeec
Confidence 67899999999999 788887788899999999999764 3333 2568999999999998 4554
Q ss_pred ec
Q 044279 239 IC 240 (305)
Q Consensus 239 ~~ 240 (305)
.+
T Consensus 232 ~~ 233 (308)
T 1h6u_A 232 QP 233 (308)
T ss_dssp CC
T ss_pred CC
Confidence 33
No 62
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.76 E-value=7.9e-18 Score=143.99 Aligned_cols=193 Identities=19% Similarity=0.143 Sum_probs=120.3
Q ss_pred CCcccEEeCCCCCCccccchhhhcccccccccccCCccccCC-cccccccccceeeccccceeeceEEEeeccccccccc
Q 044279 1 MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELP-AGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTV 79 (305)
Q Consensus 1 l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~ 79 (305)
+++++.++++++ .++.+|..+. ++++.|++++|.+..++ ..+..+++|++|++++|.+. .+
T Consensus 9 l~~l~~l~~~~~-~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~---------------~~ 70 (290)
T 1p9a_G 9 VASHLEVNCDKR-NLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT---------------KL 70 (290)
T ss_dssp STTCCEEECTTS-CCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC---------------EE
T ss_pred cCCccEEECCCC-CCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC---------------cc
Confidence 356677777777 6667765543 56777777777776543 34667777777777777642 11
Q ss_pred cccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc---ccCCCccEEEEeceecceecccccC
Q 044279 80 LAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD---FRMDHLETLEIVDCSLESINIYFGD 156 (305)
Q Consensus 80 ~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~L~~L~l~~~~l~~~~~~~~~ 156 (305)
+. ...+++|+.|++++ + .+..++ ..+++|+.|++++|.++.++...+
T Consensus 71 ~~-~~~l~~L~~L~Ls~--N--------------------------~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~- 120 (290)
T 1p9a_G 71 QV-DGTLPVLGTLDLSH--N--------------------------QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL- 120 (290)
T ss_dssp EC-CSCCTTCCEEECCS--S--------------------------CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTT-
T ss_pred cC-CCCCCcCCEEECCC--C--------------------------cCCcCchhhccCCCCCEEECCCCcCcccCHHHH-
Confidence 11 24556666666655 2 222222 446677777777777666664432
Q ss_pred CCcccCCCccceEeeeCCCCCccCC--cCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcc
Q 044279 157 QGRTYCFRNLRHLSVKDCHFMTDLK--WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLP 234 (305)
Q Consensus 157 ~~~~~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 234 (305)
..+++|++|++++| .++.++ .+..+++|+.|++++|. +..++. ..+..+++|+.|+++++
T Consensus 121 ----~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~-----------~~~~~l~~L~~L~L~~N- 182 (290)
T 1p9a_G 121 ----RGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNN-LTELPA-----------GLLNGLENLDTLLLQEN- 182 (290)
T ss_dssp ----TTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSC-CSCCCT-----------TTTTTCTTCCEEECCSS-
T ss_pred ----cCCCCCCEEECCCC-CCCccChhhcccccCCCEEECCCCc-CCccCH-----------HHhcCcCCCCEEECCCC-
Confidence 56677777777777 555554 24566777777777754 444443 23456777777777777
Q ss_pred cCceecCCCCCCCCCceEEeeCCCC
Q 044279 235 SLTSICCRAVPLPSLKTISVYDCPG 259 (305)
Q Consensus 235 ~l~~~~~~~~~~~~L~~L~l~~c~~ 259 (305)
.++.++......++|+.+++++++.
T Consensus 183 ~l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 183 SLYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred cCCccChhhcccccCCeEEeCCCCc
Confidence 6667776666667777777776653
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.75 E-value=1.2e-18 Score=150.73 Aligned_cols=223 Identities=16% Similarity=0.117 Sum_probs=140.0
Q ss_pred cccEEeCCCCCCccccchhhhcccccccccccCCccc--cCCcccc-------cccccceeeccccceeeceEEEeeccc
Q 044279 3 ALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIR--ELPAGIK-------YLKNLKILRLDVFSWFSTELVALHHNF 73 (305)
Q Consensus 3 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~--~lp~~~~-------~l~~L~~L~l~~~~~~~~~~~l~~~~~ 73 (305)
+|++|++++| .+ .+|..+... |+.|+++++.+. .+|..+. .+++|++|++++|.+
T Consensus 44 ~L~~l~l~~n-~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l------------ 107 (312)
T 1wwl_A 44 SLEYLLKRVD-TE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEV------------ 107 (312)
T ss_dssp ECTTHHHHCC-TT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBC------------
T ss_pred CceeEeeccc-cc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcc------------
Confidence 4667777777 55 677665554 888888888774 4555554 678888888888875
Q ss_pred cccccccccc--cCccCccceeEEEeecCcccccc-cccCC-CccccceEEEEEcCCCcccc----ccCCCccEEEEece
Q 044279 74 CCATTVLAGL--ESLENIHDISITLCFVDTHAFCR-FQSSP-KLQSCVKRLTVASPWFSSLD----FRMDHLETLEIVDC 145 (305)
Q Consensus 74 ~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~-l~~~~-~~~~~L~~L~l~~~~~~~~~----~~~~~L~~L~l~~~ 145 (305)
....+..+ ..+++|+.|+++++ .....+. +.... ...++|++|+++.+.+..++ ..+++|+.|++++|
T Consensus 108 --~~~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 183 (312)
T 1wwl_A 108 --TGTAPPPLLEATGPDLNILNLRNV--SWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDN 183 (312)
T ss_dssp --BSCCCCCSSSCCSCCCSEEEEESC--BCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSC
T ss_pred --cchhHHHHHHhcCCCccEEEccCC--CCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCC
Confidence 22444444 77888888888873 2222211 11110 01145888888866665554 56778888888888
Q ss_pred ecce-e--cccccCCCcccCCCccceEeeeCCCCCccCC-----cCCCCCCCCEEEEeccccccccccccCCCCCccccc
Q 044279 146 SLES-I--NIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK-----WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEE 217 (305)
Q Consensus 146 ~l~~-~--~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~-----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 217 (305)
.+.. + +.... +..+++|++|++++| .++.++ .+..+++|++|++++|......+. .
T Consensus 184 ~l~~~~~~~~~~~----~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-----------~ 247 (312)
T 1wwl_A 184 PELGERGLISALC----PLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA-----------P 247 (312)
T ss_dssp TTCHHHHHHHHSC----TTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCC-----------S
T ss_pred CcCcchHHHHHHH----hccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCcCCcccch-----------h
Confidence 7332 1 11211 156788888888888 555432 223567888888888664332211 1
Q ss_pred cccccCccceeeccCcccCceecCCCCCCCCCceEEeeCCCCCCCCCC
Q 044279 218 SHHFLSNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKLPL 265 (305)
Q Consensus 218 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 265 (305)
.+..+++|++|++++| .++.++.... ++|+.|+++++ +++.+|.
T Consensus 248 ~~~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N-~l~~~p~ 291 (312)
T 1wwl_A 248 SCDWPSQLNSLNLSFT-GLKQVPKGLP--AKLSVLDLSYN-RLDRNPS 291 (312)
T ss_dssp CCCCCTTCCEEECTTS-CCSSCCSSCC--SEEEEEECCSS-CCCSCCC
T ss_pred hhhhcCCCCEEECCCC-ccChhhhhcc--CCceEEECCCC-CCCCChh
Confidence 3445678888888887 6666665443 78888888766 5666655
No 64
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.74 E-value=5.6e-17 Score=147.22 Aligned_cols=119 Identities=16% Similarity=0.174 Sum_probs=71.7
Q ss_pred CcccEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeeccccccccccc
Q 044279 2 HALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLA 81 (305)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~ 81 (305)
++|++|++++| .++.+| .++++++|++|++++|++..+|..+ .+|++|++++|.+. .++
T Consensus 131 ~~L~~L~L~~n-~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~---------------~l~- 189 (454)
T 1jl5_A 131 PLLEYLGVSNN-QLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLE---------------ELP- 189 (454)
T ss_dssp TTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCS---------------SCC-
T ss_pred CCCCEEECcCC-CCCCCc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCC---------------cCc-
Confidence 47888888888 777787 4888888888888888887776543 47778888777642 222
Q ss_pred cccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc--ccCCCccEEEEeceecce
Q 044279 82 GLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD--FRMDHLETLEIVDCSLES 149 (305)
Q Consensus 82 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~L~~L~l~~~~l~~ 149 (305)
.+..+++|+.|++++ +....++.. ..+|+.|+++.+.+..++ ..+++|+.|++++|.++.
T Consensus 190 ~~~~l~~L~~L~l~~--N~l~~l~~~------~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~ 251 (454)
T 1jl5_A 190 ELQNLPFLTAIYADN--NSLKKLPDL------PLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKT 251 (454)
T ss_dssp CCTTCTTCCEEECCS--SCCSSCCCC------CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS
T ss_pred cccCCCCCCEEECCC--CcCCcCCCC------cCcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCc
Confidence 466666666666665 222222111 123555555533343333 344455555555544443
No 65
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.74 E-value=8.1e-18 Score=142.58 Aligned_cols=204 Identities=19% Similarity=0.192 Sum_probs=131.1
Q ss_pred hhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeeccccccccccccccCccCccceeEEEeecCc
Q 044279 22 IGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDT 101 (305)
Q Consensus 22 ~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 101 (305)
...+.+|+.|+++++.+..++ .++.+++|++|++++|.+. . +..+..+++|+.|++++ +..
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~---------------~-~~~l~~l~~L~~L~L~~--n~l 97 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLH---------------D-ISALKELTNLTYLILTG--NQL 97 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCC---------------C-CGGGTTCTTCCEEECTT--SCC
T ss_pred cccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCC---------------C-chhhcCCCCCCEEECCC--Ccc
Confidence 345556666666666555553 3555666666666666531 1 23455566666666655 222
Q ss_pred ccccccccCCCccccceEEEEEcCCCcccc----ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCC
Q 044279 102 HAFCRFQSSPKLQSCVKRLTVASPWFSSLD----FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFM 177 (305)
Q Consensus 102 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l 177 (305)
..+.. ......++|++|+++.+.++.++ ..+++|+.|++++|.++.++.... ..+++|+.|++++| .+
T Consensus 98 ~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~l~~n-~l 169 (272)
T 3rfs_A 98 QSLPN--GVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVF-----DKLTNLTELDLSYN-QL 169 (272)
T ss_dssp CCCCT--TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT-----TTCTTCCEEECCSS-CC
T ss_pred CccCh--hHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHh-----ccCccCCEEECCCC-Cc
Confidence 11111 00011123666666644444444 457889999999998887776542 67899999999999 67
Q ss_pred ccCCc--CCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCceecCCCCCCCCCceEEee
Q 044279 178 TDLKW--IRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICCRAVPLPSLKTISVY 255 (305)
Q Consensus 178 ~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~ 255 (305)
+.++. +..+++|++|++++|.. ..+++ ..++.+++|+.|++++|+- .+.+++|+.++++
T Consensus 170 ~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~-----------~~~~~l~~L~~L~l~~N~~-------~~~~~~l~~l~~~ 230 (272)
T 3rfs_A 170 QSLPEGVFDKLTQLKDLRLYQNQL-KSVPD-----------GVFDRLTSLQYIWLHDNPW-------DCTCPGIRYLSEW 230 (272)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCC-SCCCT-----------TTTTTCTTCCEEECCSSCB-------CCCTTTTHHHHHH
T ss_pred CccCHHHhcCCccCCEEECCCCcC-CccCH-----------HHHhCCcCCCEEEccCCCc-------cccCcHHHHHHHH
Confidence 77653 67889999999999764 34443 2567889999999999842 2346788888887
Q ss_pred CCCCCCCCCCCCcccc
Q 044279 256 DCPGLRKLPLNSGSAK 271 (305)
Q Consensus 256 ~c~~l~~~~~~~~~~~ 271 (305)
.+..-..+|..+....
T Consensus 231 ~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 231 INKHSGVVRNSAGSVA 246 (272)
T ss_dssp HHHTGGGBBCTTSCBC
T ss_pred HHhCCCcccCcccccC
Confidence 7766667888777665
No 66
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.74 E-value=6.9e-17 Score=153.86 Aligned_cols=33 Identities=12% Similarity=0.250 Sum_probs=19.5
Q ss_pred cceEeeeCCCCCccCC--cCCCCCCCCEEEEecccc
Q 044279 166 LRHLSVKDCHFMTDLK--WIRCAPNLQFLYVSDCQV 199 (305)
Q Consensus 166 L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~ 199 (305)
|+.|++++| .++.++ .+..+++|++|++++|..
T Consensus 250 L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l 284 (680)
T 1ziw_A 250 LTMLDLSYN-NLNVVGNDSFAWLPQLEYFFLEYNNI 284 (680)
T ss_dssp CCEEECTTS-CCCEECTTTTTTCTTCCEEECCSCCB
T ss_pred CCEEECCCC-CcCccCcccccCcccccEeeCCCCcc
Confidence 666666666 444432 355666777777776543
No 67
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.74 E-value=2.2e-17 Score=157.30 Aligned_cols=219 Identities=22% Similarity=0.262 Sum_probs=100.2
Q ss_pred CCcccEEeCCCCCC-ccccchh-hhcc--cccccccccCCccccC-CcccccccccceeeccccceeeceEEEeeccccc
Q 044279 1 MHALAVLDLSYNFD-LVELPEA-IGKL--INLCHLNLSNTKIREL-PAGIKYLKNLKILRLDVFSWFSTELVALHHNFCC 75 (305)
Q Consensus 1 l~~L~~L~l~~~~~-~~~lp~~-~~~l--~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~ 75 (305)
+++|++|++++|.. +..++.. +..+ .+|+.|++++|++..+ |..+..+++|++|++++|.+..
T Consensus 352 l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~------------ 419 (680)
T 1ziw_A 352 LINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQ------------ 419 (680)
T ss_dssp CTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEE------------
T ss_pred ccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCcc------------
Confidence 45677777777621 2233322 2222 3566666666666543 3346666666666666665421
Q ss_pred cccccccccCccCccceeEEEeecCcccc--cccccCCCccccceEEEEEcCCCc---ccc---ccCCCccEEEEeceec
Q 044279 76 ATTVLAGLESLENIHDISITLCFVDTHAF--CRFQSSPKLQSCVKRLTVASPWFS---SLD---FRMDHLETLEIVDCSL 147 (305)
Q Consensus 76 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~l~~~~~~~~~L~~L~l~~~~~~---~~~---~~~~~L~~L~l~~~~l 147 (305)
......+..+++|+.|++++| ..... ..+. ..++|+.|+++.+.+. ..+ ..+++|+.|++++|.+
T Consensus 420 -~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~~~----~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l 492 (680)
T 1ziw_A 420 -ELTGQEWRGLENIFEIYLSYN--KYLQLTRNSFA----LVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNI 492 (680)
T ss_dssp -ECCSGGGTTCTTCCEEECCSC--SEEECCTTTTT----TCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCC
T ss_pred -ccCcccccCcccccEEecCCC--CcceeChhhhh----cCcccccchhccccccccccCCcccccCCCCCEEECCCCCC
Confidence 111134555566666665552 21111 1111 1123555555522221 111 3445555555555555
Q ss_pred ceecccccCCCcccCCCccceEeeeCCCCCccCC----------cCCCCCCCCEEEEeccccccccccccCCCCCccccc
Q 044279 148 ESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK----------WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEE 217 (305)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~----------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 217 (305)
+.++.... ..+++|++|++++| .++.++ .+..+++|+.|++++|. +..++. .
T Consensus 493 ~~i~~~~~-----~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~-----------~ 554 (680)
T 1ziw_A 493 ANINDDML-----EGLEKLEILDLQHN-NLARLWKHANPGGPIYFLKGLSHLHILNLESNG-FDEIPV-----------E 554 (680)
T ss_dssp CCCCTTTT-----TTCTTCCEEECCSS-CCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC-CCCCCT-----------T
T ss_pred CcCChhhh-----ccccccCEEeCCCC-CccccchhhccCCcchhhcCCCCCCEEECCCCC-CCCCCH-----------H
Confidence 44443321 34555555555555 333220 13444555555555543 223332 1
Q ss_pred cccccCccceeeccCcccCceecCCC-CCCCCCceEEeeCC
Q 044279 218 SHHFLSNLMVIDLQHLPSLTSICCRA-VPLPSLKTISVYDC 257 (305)
Q Consensus 218 ~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~l~~c 257 (305)
.+.++++|+.|+++++ .++.++... ..+++|+.|++++|
T Consensus 555 ~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N 594 (680)
T 1ziw_A 555 VFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKN 594 (680)
T ss_dssp TTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECTTS
T ss_pred HcccccCcceeECCCC-CCCcCCHhHhCCCCCCCEEECCCC
Confidence 2344555555555554 444444332 24455555555444
No 68
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.74 E-value=9.1e-17 Score=150.67 Aligned_cols=227 Identities=20% Similarity=0.204 Sum_probs=131.8
Q ss_pred cccEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeecccccccccccc
Q 044279 3 ALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAG 82 (305)
Q Consensus 3 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~ 82 (305)
++++|+++++ .++.+|..+. ++|++|++++|+++.+|. .+++|++|++++|.+. .++.
T Consensus 41 ~l~~L~ls~n-~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~---------------~lp~- 98 (622)
T 3g06_A 41 GNAVLNVGES-GLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLT---------------SLPV- 98 (622)
T ss_dssp CCCEEECCSS-CCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCS---------------CCCC-
T ss_pred CCcEEEecCC-CcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCC---------------cCCC-
Confidence 5889999999 8899998665 899999999999999987 5789999999999852 3333
Q ss_pred ccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCccccccCCCccEEEEeceecceecccccCCCc---
Q 044279 83 LESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGR--- 159 (305)
Q Consensus 83 l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~--- 159 (305)
.+++|+.|+++. +....++. ...+|+.|+++.|.++.++..+++|+.|++++|.++.++........
T Consensus 99 --~l~~L~~L~Ls~--N~l~~l~~------~l~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L 168 (622)
T 3g06_A 99 --LPPGLLELSIFS--NPLTHLPA------LPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPALPSELCKLWA 168 (622)
T ss_dssp --CCTTCCEEEECS--CCCCCCCC------CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEEC
T ss_pred --CCCCCCEEECcC--CcCCCCCC------CCCCcCEEECCCCCCCcCCCCCCCCCEEECcCCcCCCcCCccCCCCEEEC
Confidence 567788888877 33333222 22346666666555555554456666666666665554421100000
Q ss_pred --------ccCCCccceEeeeCCCCCccCCcCCCCCCCCEEEEeccccccccccccCCC-----CCccccccccccCccc
Q 044279 160 --------TYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESP-----GTSEIEESHHFLSNLM 226 (305)
Q Consensus 160 --------~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~L~ 226 (305)
...+++|+.|++++| .++.++.. +++|+.|++++|. +..++...... ....+......+++|+
T Consensus 169 ~~N~l~~l~~~~~~L~~L~Ls~N-~l~~l~~~--~~~L~~L~L~~N~-l~~l~~~~~~L~~L~Ls~N~L~~lp~~l~~L~ 244 (622)
T 3g06_A 169 YNNQLTSLPMLPSGLQELSVSDN-QLASLPTL--PSELYKLWAYNNR-LTSLPALPSGLKELIVSGNRLTSLPVLPSELK 244 (622)
T ss_dssp CSSCCSCCCCCCTTCCEEECCSS-CCSCCCCC--CTTCCEEECCSSC-CSSCCCCCTTCCEEECCSSCCSCCCCCCTTCC
T ss_pred CCCCCCCCcccCCCCcEEECCCC-CCCCCCCc--cchhhEEECcCCc-ccccCCCCCCCCEEEccCCccCcCCCCCCcCc
Confidence 012355666666666 44444321 3445555555433 22222100000 0001111113456666
Q ss_pred eeeccCcccCceecCCCCCCCCCceEEeeCCCCCCCCCCCCccc
Q 044279 227 VIDLQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKLPLNSGSA 270 (305)
Q Consensus 227 ~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 270 (305)
.|++++| .++.++. .+++|+.|++++| .++.+|..+..+
T Consensus 245 ~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N-~L~~lp~~l~~l 283 (622)
T 3g06_A 245 ELMVSGN-RLTSLPM---LPSGLLSLSVYRN-QLTRLPESLIHL 283 (622)
T ss_dssp EEECCSS-CCSCCCC---CCTTCCEEECCSS-CCCSCCGGGGGS
T ss_pred EEECCCC-CCCcCCc---ccccCcEEeCCCC-CCCcCCHHHhhc
Confidence 6666666 5555554 4567777777665 555666655544
No 69
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.73 E-value=3.3e-17 Score=140.09 Aligned_cols=150 Identities=17% Similarity=0.171 Sum_probs=99.6
Q ss_pred CcccEEeCCCCCCccccc-hhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeecccccccccc
Q 044279 2 HALAVLDLSYNFDLVELP-EAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVL 80 (305)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~ 80 (305)
+++++|++++| .++.++ ..+..+++|++|++++|.+..++.. +.+++|++|++++|.+ ..++
T Consensus 31 ~~l~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~l---------------~~l~ 93 (290)
T 1p9a_G 31 KDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQL---------------QSLP 93 (290)
T ss_dssp TTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSCC---------------SSCC
T ss_pred CCCCEEEcCCC-cCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCcC---------------CcCc
Confidence 47899999999 788774 5699999999999999999988754 8899999999999984 4566
Q ss_pred ccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCccccccCCCccEEEEeceecceecccccCCCcc
Q 044279 81 AGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRT 160 (305)
Q Consensus 81 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 160 (305)
..+..+++|+.|+++. +....+.. ... ..+++|+.|++++|.++.++...+
T Consensus 94 ~~~~~l~~L~~L~l~~--N~l~~l~~--~~~--------------------~~l~~L~~L~L~~N~l~~~~~~~~----- 144 (290)
T 1p9a_G 94 LLGQTLPALTVLDVSF--NRLTSLPL--GAL--------------------RGLGELQELYLKGNELKTLPPGLL----- 144 (290)
T ss_dssp CCTTTCTTCCEEECCS--SCCCCCCS--STT--------------------TTCTTCCEEECTTSCCCCCCTTTT-----
T ss_pred hhhccCCCCCEEECCC--CcCcccCH--HHH--------------------cCCCCCCEEECCCCCCCccChhhc-----
Confidence 7778888999998887 33222210 000 234455555555555554443331
Q ss_pred cCCCccceEeeeCCCCCccCC--cCCCCCCCCEEEEeccc
Q 044279 161 YCFRNLRHLSVKDCHFMTDLK--WIRCAPNLQFLYVSDCQ 198 (305)
Q Consensus 161 ~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~ 198 (305)
..+++|+.|++++| .++.++ .+..+++|++|++++|.
T Consensus 145 ~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~ 183 (290)
T 1p9a_G 145 TPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQENS 183 (290)
T ss_dssp TTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccccCCCEEECCCC-cCCccCHHHhcCcCCCCEEECCCCc
Confidence 34555555555555 444443 23445555555555543
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.73 E-value=2.8e-17 Score=150.56 Aligned_cols=208 Identities=16% Similarity=0.192 Sum_probs=161.7
Q ss_pred ccchhhhcc----cccccccccCCccccCC-cccccccccceeeccccceeeceEEEeeccccccccccccccCccCccc
Q 044279 17 ELPEAIGKL----INLCHLNLSNTKIRELP-AGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHD 91 (305)
Q Consensus 17 ~lp~~~~~l----~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~ 91 (305)
.+|..+..+ ++|++|++++|.+..++ ..++.+++|++|++++|.+. ..++ +..+++|+.
T Consensus 21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~---------------~~~~-l~~l~~L~~ 84 (487)
T 3oja_A 21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY---------------ETLD-LESLSTLRT 84 (487)
T ss_dssp THHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCE---------------EEEE-CTTCTTCCE
T ss_pred hhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCC---------------CCcc-cccCCCCCE
Confidence 455555444 48999999999998775 46999999999999999853 2222 889999999
Q ss_pred eeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc-ccCCCccEEEEeceecceecccccCCCcccCCCccceEe
Q 044279 92 ISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD-FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLS 170 (305)
Q Consensus 92 L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~ 170 (305)
|++++ +... .+... ++|+.|+++.|.+..++ ..+++|+.|++++|.++.++... +..+++|+.|+
T Consensus 85 L~Ls~--N~l~---~l~~~----~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~-----~~~l~~L~~L~ 150 (487)
T 3oja_A 85 LDLNN--NYVQ---ELLVG----PSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLD-----EGCRSRVQYLD 150 (487)
T ss_dssp EECCS--SEEE---EEEEC----TTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBC-----GGGGSSEEEEE
T ss_pred EEecC--CcCC---CCCCC----CCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchh-----hcCCCCCCEEE
Confidence 99988 3333 22222 45999999977787777 67899999999999987776544 26789999999
Q ss_pred eeCCCCCccC-C-cCC-CCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCceecCCCCCCC
Q 044279 171 VKDCHFMTDL-K-WIR-CAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICCRAVPLP 247 (305)
Q Consensus 171 L~~~~~l~~~-~-~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 247 (305)
+++| .++.. + .+. .+++|++|++++|. +..++. ...+++|+.|++++| .++.++.....++
T Consensus 151 Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~~-------------~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~ 214 (487)
T 3oja_A 151 LKLN-EIDTVNFAELAASSDTLEHLNLQYNF-IYDVKG-------------QVVFAKLKTLDLSSN-KLAFMGPEFQSAA 214 (487)
T ss_dssp CTTS-CCCEEEGGGGGGGTTTCCEEECTTSC-CCEEEC-------------CCCCTTCCEEECCSS-CCCEECGGGGGGT
T ss_pred CCCC-CCCCcChHHHhhhCCcccEEecCCCc-cccccc-------------cccCCCCCEEECCCC-CCCCCCHhHcCCC
Confidence 9999 66653 2 343 68999999999977 444432 336899999999999 7888877777899
Q ss_pred CCceEEeeCCCCCCCCCCCCcccc
Q 044279 248 SLKTISVYDCPGLRKLPLNSGSAK 271 (305)
Q Consensus 248 ~L~~L~l~~c~~l~~~~~~~~~~~ 271 (305)
+|+.|++++| .+..+|..+...+
T Consensus 215 ~L~~L~Ls~N-~l~~lp~~l~~l~ 237 (487)
T 3oja_A 215 GVTWISLRNN-KLVLIEKALRFSQ 237 (487)
T ss_dssp TCSEEECTTS-CCCEECTTCCCCT
T ss_pred CccEEEecCC-cCcccchhhccCC
Confidence 9999999876 6777887766553
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.73 E-value=2e-17 Score=140.38 Aligned_cols=194 Identities=21% Similarity=0.204 Sum_probs=106.6
Q ss_pred ccccccccCCccccCCc-ccccccccceeeccccceeeceEEEeeccccccccccccccCccCccceeEEEeecCccccc
Q 044279 27 NLCHLNLSNTKIRELPA-GIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFC 105 (305)
Q Consensus 27 ~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 105 (305)
+|++|++++|++..++. .+..+++|++|++++|.+. ......+..+++|+.|+++++........
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 94 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ--------------TIEDGAYQSLSHLSTLILTGNPIQSLALG 94 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC--------------EECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCC--------------ccCHHHccCCcCCCEEECCCCccCccChh
Confidence 45555555555554433 3445555555555555421 11122344455555555544211111111
Q ss_pred ccccCCCccccceEEEEEcCCCcccc----ccCCCccEEEEeceeccee--cccccCCCcccCCCccceEeeeCCCCCcc
Q 044279 106 RFQSSPKLQSCVKRLTVASPWFSSLD----FRMDHLETLEIVDCSLESI--NIYFGDQGRTYCFRNLRHLSVKDCHFMTD 179 (305)
Q Consensus 106 ~l~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~L~~L~l~~~~l~~~--~~~~~~~~~~~~~~~L~~L~L~~~~~l~~ 179 (305)
.+... .+|+.|+++.+.+..++ ..+++|+.|++++|.++++ +..+ ..+++|++|++++| .++.
T Consensus 95 ~~~~l----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~------~~l~~L~~L~Ls~N-~l~~ 163 (276)
T 2z62_A 95 AFSGL----SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF------SNLTNLEHLDLSSN-KIQS 163 (276)
T ss_dssp TTTTC----TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGG------GGCTTCCEEECCSS-CCCE
T ss_pred hhcCC----ccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhh------ccCCCCCEEECCCC-CCCc
Confidence 11111 22555555533333322 5677888888888887663 3232 66788888888888 5555
Q ss_pred CC--cCCCCCCCC----EEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCceecCCC-CCCCCCceE
Q 044279 180 LK--WIRCAPNLQ----FLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICCRA-VPLPSLKTI 252 (305)
Q Consensus 180 ~~--~~~~~~~L~----~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L 252 (305)
++ .+..+++|+ +|++++|. +..+++ ......+|+.|++++| .++.++... ..+++|+.|
T Consensus 164 ~~~~~~~~l~~L~~l~l~L~ls~n~-l~~~~~------------~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 229 (276)
T 2z62_A 164 IYCTDLRVLHQMPLLNLSLDLSLNP-MNFIQP------------GAFKEIRLKELALDTN-QLKSVPDGIFDRLTSLQKI 229 (276)
T ss_dssp ECGGGGHHHHTCTTCCEEEECCSSC-CCEECT------------TSSCSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEE
T ss_pred CCHHHhhhhhhccccceeeecCCCc-ccccCc------------cccCCCcccEEECCCC-ceeecCHhHhcccccccEE
Confidence 43 333344444 78888865 444443 2223447888888888 677776543 568888888
Q ss_pred EeeCCCC
Q 044279 253 SVYDCPG 259 (305)
Q Consensus 253 ~l~~c~~ 259 (305)
++++++.
T Consensus 230 ~l~~N~~ 236 (276)
T 2z62_A 230 WLHTNPW 236 (276)
T ss_dssp ECCSSCB
T ss_pred EccCCcc
Confidence 8887643
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.72 E-value=3e-17 Score=139.28 Aligned_cols=196 Identities=21% Similarity=0.189 Sum_probs=146.0
Q ss_pred CcccEEeCCCCCCccccch-hhhcccccccccccCCccccCCc-ccccccccceeeccccceeeceEEEeeccccccccc
Q 044279 2 HALAVLDLSYNFDLVELPE-AIGKLINLCHLNLSNTKIRELPA-GIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTV 79 (305)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~ 79 (305)
++|++|++++| .++.++. .+.++++|++|++++|++..++. .+..+++|++|++++|.+. ...
T Consensus 28 ~~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--------------~~~ 92 (276)
T 2z62_A 28 FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ--------------SLA 92 (276)
T ss_dssp TTCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC--------------EEC
T ss_pred CCccEEECCCC-cccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC--------------ccC
Confidence 36899999999 8888875 68999999999999999987765 5889999999999999852 233
Q ss_pred cccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcc--cc---ccCCCccEEEEeceecceecccc
Q 044279 80 LAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSS--LD---FRMDHLETLEIVDCSLESINIYF 154 (305)
Q Consensus 80 ~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~--~~---~~~~~L~~L~l~~~~l~~~~~~~ 154 (305)
+..+..+++|+.|++.. +....+... .....++|++|+++.+.+.. ++ ..+++|+.|++++|.++.++...
T Consensus 93 ~~~~~~l~~L~~L~l~~--n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 168 (276)
T 2z62_A 93 LGAFSGLSSLQKLVAVE--TNLASLENF--PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168 (276)
T ss_dssp TTTTTTCTTCCEEECTT--SCCCCSTTC--CCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred hhhhcCCccccEEECCC--CCccccCch--hcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHH
Confidence 46788899999999987 333332221 11222459999999666655 33 77899999999999988776543
Q ss_pred cCCCcccCCCccc----eEeeeCCCCCccCC-cCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceee
Q 044279 155 GDQGRTYCFRNLR----HLSVKDCHFMTDLK-WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVID 229 (305)
Q Consensus 155 ~~~~~~~~~~~L~----~L~L~~~~~l~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 229 (305)
. ..+++|+ +|++++| .++.++ ......+|++|++++|. +..++. ..+..+++|+.|+
T Consensus 169 ~-----~~l~~L~~l~l~L~ls~n-~l~~~~~~~~~~~~L~~L~L~~n~-l~~~~~-----------~~~~~l~~L~~L~ 230 (276)
T 2z62_A 169 L-----RVLHQMPLLNLSLDLSLN-PMNFIQPGAFKEIRLKELALDTNQ-LKSVPD-----------GIFDRLTSLQKIW 230 (276)
T ss_dssp G-----HHHHTCTTCCEEEECCSS-CCCEECTTSSCSCCEEEEECCSSC-CSCCCT-----------TTTTTCCSCCEEE
T ss_pred h-----hhhhhccccceeeecCCC-cccccCccccCCCcccEEECCCCc-eeecCH-----------hHhcccccccEEE
Confidence 2 4455555 8999998 666654 33345689999999976 555544 2457899999999
Q ss_pred ccCcc
Q 044279 230 LQHLP 234 (305)
Q Consensus 230 l~~~~ 234 (305)
+++++
T Consensus 231 l~~N~ 235 (276)
T 2z62_A 231 LHTNP 235 (276)
T ss_dssp CCSSC
T ss_pred ccCCc
Confidence 99884
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.72 E-value=6.8e-18 Score=145.93 Aligned_cols=212 Identities=19% Similarity=0.195 Sum_probs=155.4
Q ss_pred ccEEeCCCCCCcc--ccchhhh-------cccccccccccCCccc-cCCccc--ccccccceeeccccceeeceEEEeec
Q 044279 4 LAVLDLSYNFDLV--ELPEAIG-------KLINLCHLNLSNTKIR-ELPAGI--KYLKNLKILRLDVFSWFSTELVALHH 71 (305)
Q Consensus 4 L~~L~l~~~~~~~--~lp~~~~-------~l~~L~~L~l~~~~l~-~lp~~~--~~l~~L~~L~l~~~~~~~~~~~l~~~ 71 (305)
|++|++++| .+. .+|..+. ++++|++|++++|++. .+|..+ +.+++|++|++++|.+.
T Consensus 65 L~~L~L~~n-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~--------- 134 (312)
T 1wwl_A 65 IKSLSLKRL-TVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWA--------- 134 (312)
T ss_dssp HHHCCCCEE-EEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCS---------
T ss_pred Hhhcccccc-cccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCc---------
Confidence 677888888 664 4566555 7899999999999887 677776 88999999999999853
Q ss_pred cccccccccccccCc-----cCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCccc---c-----ccCCCcc
Q 044279 72 NFCCATTVLAGLESL-----ENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSL---D-----FRMDHLE 138 (305)
Q Consensus 72 ~~~~~~~~~~~l~~l-----~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~---~-----~~~~~L~ 138 (305)
..+..+..+ ++|+.|+++++.........+... ++|+.|+++.|.+... + ..+++|+
T Consensus 135 ------~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l----~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~ 204 (312)
T 1wwl_A 135 ------TRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF----PALSTLDLSDNPELGERGLISALCPLKFPTLQ 204 (312)
T ss_dssp ------SSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC----SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCC
T ss_pred ------chhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC----CCCCEEECCCCCcCcchHHHHHHHhccCCCCC
Confidence 225555555 889999998842222222233333 3499999996654321 1 5789999
Q ss_pred EEEEeceecceec---ccccCCCcccCCCccceEeeeCCCCCccC---CcCCCCCCCCEEEEeccccccccccccCCCCC
Q 044279 139 TLEIVDCSLESIN---IYFGDQGRTYCFRNLRHLSVKDCHFMTDL---KWIRCAPNLQFLYVSDCQVLSEIIGTYESPGT 212 (305)
Q Consensus 139 ~L~l~~~~l~~~~---~~~~~~~~~~~~~~L~~L~L~~~~~l~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 212 (305)
.|++++|.++.++ ... ...+++|++|++++| .++.. +.+..+++|++|++++|. ++.++.
T Consensus 205 ~L~L~~N~l~~~~~~~~~~-----~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~------- 270 (312)
T 1wwl_A 205 VLALRNAGMETPSGVCSAL-----AAARVQLQGLDLSHN-SLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPK------- 270 (312)
T ss_dssp EEECTTSCCCCHHHHHHHH-----HHTTCCCSEEECTTS-CCCSSCCCSCCCCCTTCCEEECTTSC-CSSCCS-------
T ss_pred EEECCCCcCcchHHHHHHH-----HhcCCCCCEEECCCC-cCCcccchhhhhhcCCCCEEECCCCc-cChhhh-------
Confidence 9999999977443 222 246799999999999 66653 345567999999999976 445544
Q ss_pred ccccccccccCccceeeccCcccCceecCCCCCCCCCceEEeeCCC
Q 044279 213 SEIEESHHFLSNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCP 258 (305)
Q Consensus 213 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~ 258 (305)
.+. ++|++|+++++ .++.++. ...+++|++|++++++
T Consensus 271 -----~~~--~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 271 -----GLP--AKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp -----SCC--SEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTCT
T ss_pred -----hcc--CCceEEECCCC-CCCCChh-HhhCCCCCEEeccCCC
Confidence 333 89999999999 7888866 7789999999998874
No 74
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.71 E-value=6.6e-18 Score=143.13 Aligned_cols=194 Identities=19% Similarity=0.143 Sum_probs=113.3
Q ss_pred ccccccccccCCccccCCcccccccccceeeccccceeeceEEEeeccccccccccccccCccCccceeEEEeecCcccc
Q 044279 25 LINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAF 104 (305)
Q Consensus 25 l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 104 (305)
+.++..+++..+.+..+ .....+++|++|++.++.+. ....+..+++|+.|++++ +....+
T Consensus 18 ~~~l~~l~l~~~~~~~~-~~~~~l~~L~~L~l~~~~i~----------------~~~~l~~l~~L~~L~l~~--n~l~~~ 78 (272)
T 3rfs_A 18 FAETIKANLKKKSVTDA-VTQNELNSIDQIIANNSDIK----------------SVQGIQYLPNVRYLALGG--NKLHDI 78 (272)
T ss_dssp HHHHHHHHHTCSCTTSE-ECHHHHTTCCEEECTTSCCC----------------CCTTGGGCTTCCEEECTT--SCCCCC
T ss_pred HHHHHHHHhcCcccccc-cccccccceeeeeeCCCCcc----------------cccccccCCCCcEEECCC--CCCCCc
Confidence 34455555655555443 23556677777777776531 234466677777777766 333333
Q ss_pred cccccCCCccccceEEEEEcCCCcccc----ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccC
Q 044279 105 CRFQSSPKLQSCVKRLTVASPWFSSLD----FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDL 180 (305)
Q Consensus 105 ~~l~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~ 180 (305)
+.+... ++|++|+++.+.++.++ ..+++|+.|++++|.++.++.... ..+++|++|++++| .++.+
T Consensus 79 ~~l~~l----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~n-~l~~~ 148 (272)
T 3rfs_A 79 SALKEL----TNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVF-----DKLTNLTYLNLAHN-QLQSL 148 (272)
T ss_dssp GGGTTC----TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT-----TTCTTCCEEECCSS-CCCCC
T ss_pred hhhcCC----CCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHh-----ccCCCCCEEECCCC-ccCcc
Confidence 333322 23777777755555444 456677777777777666554432 55677777777777 55555
Q ss_pred Cc--CCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCceecCC-CCCCCCCceEEeeCC
Q 044279 181 KW--IRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICCR-AVPLPSLKTISVYDC 257 (305)
Q Consensus 181 ~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~c 257 (305)
+. +..+++|++|++++|. +..+++ ..++.+++|++|++++| .++.++.. ...+++|+.|++++|
T Consensus 149 ~~~~~~~l~~L~~L~l~~n~-l~~~~~-----------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 149 PKGVFDKLTNLTELDLSYNQ-LQSLPE-----------GVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSC-CCCCCT-----------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CHHHhccCccCCEEECCCCC-cCccCH-----------HHhcCCccCCEEECCCC-cCCccCHHHHhCCcCCCEEEccCC
Confidence 42 4566777777777764 333332 23456677777777776 55554443 345677777777666
Q ss_pred CCC
Q 044279 258 PGL 260 (305)
Q Consensus 258 ~~l 260 (305)
+..
T Consensus 216 ~~~ 218 (272)
T 3rfs_A 216 PWD 218 (272)
T ss_dssp CBC
T ss_pred Ccc
Confidence 443
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.71 E-value=9.8e-17 Score=135.72 Aligned_cols=176 Identities=23% Similarity=0.252 Sum_probs=125.9
Q ss_pred CcccEEeCCCCCCccccch-hhhcccccccccccCCccccCCcc-cccccccceeeccccceeeceEEEeeccccccccc
Q 044279 2 HALAVLDLSYNFDLVELPE-AIGKLINLCHLNLSNTKIRELPAG-IKYLKNLKILRLDVFSWFSTELVALHHNFCCATTV 79 (305)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~ 79 (305)
+++++|++++| .++.++. .+.++++|++|++++|++..+|.. +..+++|++|++++|.+. ...
T Consensus 37 ~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~--------------~~~ 101 (270)
T 2o6q_A 37 ADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ--------------ALP 101 (270)
T ss_dssp TTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCC--------------CCC
T ss_pred CCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCC--------------cCC
Confidence 46899999999 8888875 689999999999999999988876 588999999999999852 222
Q ss_pred cccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCccccccCCCccEEEEeceecceecccccCCCc
Q 044279 80 LAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGR 159 (305)
Q Consensus 80 ~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 159 (305)
+..+..+++|+.|++++ +....+. ... ...+++|+.|++++|.++.++....
T Consensus 102 ~~~~~~l~~L~~L~l~~--n~l~~~~---~~~-------------------~~~l~~L~~L~Ls~n~l~~~~~~~~---- 153 (270)
T 2o6q_A 102 IGVFDQLVNLAELRLDR--NQLKSLP---PRV-------------------FDSLTKLTYLSLGYNELQSLPKGVF---- 153 (270)
T ss_dssp TTTTTTCSSCCEEECCS--SCCCCCC---TTT-------------------TTTCTTCCEEECCSSCCCCCCTTTT----
T ss_pred HhHcccccCCCEEECCC--CccCeeC---HHH-------------------hCcCcCCCEEECCCCcCCccCHhHc----
Confidence 34567888999998887 3222111 000 0346677777777777766665432
Q ss_pred ccCCCccceEeeeCCCCCccCC--cCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcc
Q 044279 160 TYCFRNLRHLSVKDCHFMTDLK--WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLP 234 (305)
Q Consensus 160 ~~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 234 (305)
..+++|++|++++| .++.++ .+..+++|++|++++|. +..++. ..+..+++|+.|++++++
T Consensus 154 -~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~-----------~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 154 -DKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNNQ-LKRVPE-----------GAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp -TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC-CSCCCT-----------TTTTTCTTCCEEECCSSC
T ss_pred -cCCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCCc-CCcCCH-----------HHhccccCCCEEEecCCC
Confidence 56777888888877 566554 35667788888888764 444443 245567788888887764
No 76
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.70 E-value=8.1e-17 Score=137.78 Aligned_cols=166 Identities=22% Similarity=0.289 Sum_probs=102.7
Q ss_pred hcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeeccccccccccccccCccCccceeEEEeecCcc
Q 044279 23 GKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTH 102 (305)
Q Consensus 23 ~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 102 (305)
..+.+|++|++++|.+..++ .+..+++|++|++++|.+. ..+. +..+++|+.|++++ +...
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~---------------~~~~-l~~l~~L~~L~l~~--n~l~ 103 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLT---------------DIKP-LANLKNLGWLFLDE--NKVK 103 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCC---------------CCGG-GTTCTTCCEEECCS--SCCC
T ss_pred hhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccC---------------CCcc-cccCCCCCEEECCC--CcCC
Confidence 45566666666666666554 3566666666666666532 2222 55666666666665 3333
Q ss_pred cccccccCCCccccceEEEEEcCCCcccc--ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccC
Q 044279 103 AFCRFQSSPKLQSCVKRLTVASPWFSSLD--FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDL 180 (305)
Q Consensus 103 ~~~~l~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~ 180 (305)
.++.+.... +|+.|+++.+.+..++ ..+++|+.|++++|.+++++ . +..+++|+.|++++| .++++
T Consensus 104 ~~~~l~~l~----~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~------l~~l~~L~~L~L~~N-~l~~~ 171 (291)
T 1h6t_A 104 DLSSLKDLK----KLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDIT-V------LSRLTKLDTLSLEDN-QISDI 171 (291)
T ss_dssp CGGGGTTCT----TCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCG-G------GGGCTTCSEEECCSS-CCCCC
T ss_pred CChhhccCC----CCCEEECCCCcCCCChhhcCCCCCCEEEccCCcCCcch-h------hccCCCCCEEEccCC-ccccc
Confidence 333332222 2666666655555444 56777888888887766652 1 256788888888887 66666
Q ss_pred CcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCc
Q 044279 181 KWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHL 233 (305)
Q Consensus 181 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 233 (305)
+.+..+++|++|++++|. +..++ .+..+++|+.|+++++
T Consensus 172 ~~l~~l~~L~~L~L~~N~-i~~l~-------------~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 172 VPLAGLTKLQNLYLSKNH-ISDLR-------------ALAGLKNLDVLELFSQ 210 (291)
T ss_dssp GGGTTCTTCCEEECCSSC-CCBCG-------------GGTTCTTCSEEEEEEE
T ss_pred hhhcCCCccCEEECCCCc-CCCCh-------------hhccCCCCCEEECcCC
Confidence 557778888888888865 33332 3567788888888887
No 77
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.70 E-value=4.4e-16 Score=146.69 Aligned_cols=90 Identities=23% Similarity=0.278 Sum_probs=52.3
Q ss_pred cccEEeCCCCCCccccch-hhhcccccccccccCCccccCCcc-cccccccceeeccccceeec--eEE----------E
Q 044279 3 ALAVLDLSYNFDLVELPE-AIGKLINLCHLNLSNTKIRELPAG-IKYLKNLKILRLDVFSWFST--ELV----------A 68 (305)
Q Consensus 3 ~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~--~~~----------l 68 (305)
++++||+++| .++.+|+ .+.++++|++|++++|+++.+|.+ |.++++|++|++++|++..+ +.+ +
T Consensus 53 ~~~~LdLs~N-~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 53 STKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred CCCEEEeeCC-CCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 4666777776 6666653 466677777777777666666543 66666777777766654322 000 1
Q ss_pred eecccccccccc-ccccCccCccceeEEE
Q 044279 69 LHHNFCCATTVL-AGLESLENIHDISITL 96 (305)
Q Consensus 69 ~~~~~~~~~~~~-~~l~~l~~L~~L~l~~ 96 (305)
.++. ...++ ..++.+++|+.|++++
T Consensus 132 s~N~---l~~l~~~~~~~L~~L~~L~Ls~ 157 (635)
T 4g8a_A 132 VETN---LASLENFPIGHLKTLKELNVAH 157 (635)
T ss_dssp TTSC---CCCSTTCCCTTCTTCCEEECCS
T ss_pred CCCc---CCCCChhhhhcCcccCeecccc
Confidence 1111 12222 3467777777777777
No 78
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.70 E-value=2.3e-16 Score=138.51 Aligned_cols=218 Identities=14% Similarity=0.112 Sum_probs=96.9
Q ss_pred EEeCCCCCCccccchhhhcccccccccccCCccccCCcc-cccccccceeeccccceeec---eEE-----------Eee
Q 044279 6 VLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAG-IKYLKNLKILRLDVFSWFST---ELV-----------ALH 70 (305)
Q Consensus 6 ~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~---~~~-----------l~~ 70 (305)
.++.+++ .++++|..+ ..++++|++++|+++.+|.+ |.++++|++|++++|.+... +.+ +.+
T Consensus 13 ~v~C~~~-~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 13 VFLCQES-KVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EEEEEST-TCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred EEEecCC-CCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 3444444 455555433 23455555555555555543 45555555555555543110 000 000
Q ss_pred ccccccccccccccCccCccceeEEEeecCcccccccccCCCccccceEEEEE-cCCCcccc----c-cCCCccEEEEec
Q 044279 71 HNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVA-SPWFSSLD----F-RMDHLETLEIVD 144 (305)
Q Consensus 71 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~-~~~~~~~~----~-~~~~L~~L~l~~ 144 (305)
+.+ ....+..+..+++|+.|++.. +....+....... ..++..+++. ++.+..++ . ....++.|++++
T Consensus 90 N~l--~~l~~~~f~~l~~L~~L~l~~--n~l~~~~~~~~~~--~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~ 163 (350)
T 4ay9_X 90 NNL--LYINPEAFQNLPNLQYLLISN--TGIKHLPDVHKIH--SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK 163 (350)
T ss_dssp TTC--CEECTTSBCCCTTCCEEEEEE--ECCSSCCCCTTCC--BSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS
T ss_pred Ccc--cccCchhhhhccccccccccc--cccccCCchhhcc--cchhhhhhhccccccccccccchhhcchhhhhhcccc
Confidence 000 111123445555666666555 2222221111100 0124445554 44444433 1 122355555655
Q ss_pred eecceecccccCCCcccCCCccceEeeeCCCCCccCC--cCCCCCCCCEEEEeccccccccccccCCCCCcccccccccc
Q 044279 145 CSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK--WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFL 222 (305)
Q Consensus 145 ~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (305)
|.+++++...+ ...+|++|++.++..++.++ .+..+++|+.|++++|. ++.++. +.+
T Consensus 164 N~i~~i~~~~f------~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~--------------~~~ 222 (350)
T 4ay9_X 164 NGIQEIHNSAF------NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPS--------------YGL 222 (350)
T ss_dssp SCCCEECTTSS------TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCS--------------SSC
T ss_pred ccccCCChhhc------cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccCh--------------hhh
Confidence 55555554331 23455556655544555554 24455566666666543 333333 224
Q ss_pred CccceeeccCcccCceecCCCCCCCCCceEEe
Q 044279 223 SNLMVIDLQHLPSLTSICCRAVPLPSLKTISV 254 (305)
Q Consensus 223 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 254 (305)
.+|+.|.+.++..++.+|. ...+++|+.+++
T Consensus 223 ~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l 253 (350)
T 4ay9_X 223 ENLKKLRARSTYNLKKLPT-LEKLVALMEASL 253 (350)
T ss_dssp TTCCEEECTTCTTCCCCCC-TTTCCSCCEEEC
T ss_pred ccchHhhhccCCCcCcCCC-chhCcChhhCcC
Confidence 4455555555555555553 344555555555
No 79
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.69 E-value=3.1e-18 Score=149.39 Aligned_cols=218 Identities=18% Similarity=0.209 Sum_probs=107.0
Q ss_pred ccEEeCCCCCCccccchhhhcc--cccccccccCCccccCCcccccccccceeeccccceeeceEEEeeccccccccccc
Q 044279 4 LAVLDLSYNFDLVELPEAIGKL--INLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLA 81 (305)
Q Consensus 4 L~~L~l~~~~~~~~lp~~~~~l--~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~ 81 (305)
++.++++++ .+. +..+..+ .+++.|+++++.+...+..+..+++|++|++++|.+. ...++.
T Consensus 49 ~~~l~l~~~-~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~-------------~~~~~~ 112 (336)
T 2ast_B 49 WQTLDLTGK-NLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIE-------------VSTLHG 112 (336)
T ss_dssp SSEEECTTC-BCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEEC-------------HHHHHH
T ss_pred heeeccccc-cCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcC-------------HHHHHH
Confidence 455666665 333 3334444 5666666666665544444555666666666666532 122444
Q ss_pred cccCccCccceeEEEeecCcccccccccCCCccccceEEEEE-cCCCcc--cc---ccCCCccEEEEece-ecceec-cc
Q 044279 82 GLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVA-SPWFSS--LD---FRMDHLETLEIVDC-SLESIN-IY 153 (305)
Q Consensus 82 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~-~~~~~~--~~---~~~~~L~~L~l~~~-~l~~~~-~~ 153 (305)
.+..+++|+.|+++++.........+.. .++|++|+++ +..++. ++ ..+++|+.|++++| .+++.. ..
T Consensus 113 ~~~~~~~L~~L~L~~~~l~~~~~~~l~~----~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 188 (336)
T 2ast_B 113 ILSQCSKLQNLSLEGLRLSDPIVNTLAK----NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV 188 (336)
T ss_dssp HHTTBCCCSEEECTTCBCCHHHHHHHTT----CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH
T ss_pred HHhhCCCCCEEeCcCcccCHHHHHHHhc----CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH
Confidence 5556666666666553211111222222 2336666666 324442 22 45566666666666 444321 11
Q ss_pred ccCCCcccCCC-ccceEeeeCCC-CCcc--CC-cCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCcccee
Q 044279 154 FGDQGRTYCFR-NLRHLSVKDCH-FMTD--LK-WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVI 228 (305)
Q Consensus 154 ~~~~~~~~~~~-~L~~L~L~~~~-~l~~--~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 228 (305)
. ...++ +|++|++++|. .+++ ++ .+..+++|++|++++|..+..... ..+..+++|++|
T Consensus 189 ~-----~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~-----------~~l~~l~~L~~L 252 (336)
T 2ast_B 189 A-----VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF-----------QEFFQLNYLQHL 252 (336)
T ss_dssp H-----HHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG-----------GGGGGCTTCCEE
T ss_pred H-----HHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHH-----------HHHhCCCCCCEe
Confidence 1 13455 66666666663 2221 21 233456666666666553322111 134555666666
Q ss_pred eccCcccCceec-CCCCCCCCCceEEeeCC
Q 044279 229 DLQHLPSLTSIC-CRAVPLPSLKTISVYDC 257 (305)
Q Consensus 229 ~l~~~~~l~~~~-~~~~~~~~L~~L~l~~c 257 (305)
++++|..+.... .....+++|+.|++++|
T Consensus 253 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 253 SLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp ECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred eCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 666664332111 11234566666666665
No 80
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.69 E-value=2.9e-16 Score=137.86 Aligned_cols=206 Identities=15% Similarity=0.053 Sum_probs=133.8
Q ss_pred CcccEEeCCCCCCccccch-hhhcccccccccccCCccc-cCCcc-ccccccccee-eccccceeec--eE---------
Q 044279 2 HALAVLDLSYNFDLVELPE-AIGKLINLCHLNLSNTKIR-ELPAG-IKYLKNLKIL-RLDVFSWFST--EL--------- 66 (305)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~l~-~lp~~-~~~l~~L~~L-~l~~~~~~~~--~~--------- 66 (305)
+++++|++++| .++.+|. .+.++++|++|++++|++. .+|.. +.++++|+++ .+..|.+..+ +.
T Consensus 30 ~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~ 108 (350)
T 4ay9_X 30 RNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY 108 (350)
T ss_dssp TTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred CCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence 46888999998 8888886 4788899999999888753 45443 4556655543 3333433222 00
Q ss_pred E-EeeccccccccccccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc---ccCCCccEEEE
Q 044279 67 V-ALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD---FRMDHLETLEI 142 (305)
Q Consensus 67 ~-l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~L~~L~l 142 (305)
+ +.++.++ ............+..+++..+ .....++. .........++.|+++.|.++.++ ....+|+.+.+
T Consensus 109 L~l~~n~l~--~~~~~~~~~~~~l~~l~l~~~-~~i~~l~~-~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l 184 (350)
T 4ay9_X 109 LLISNTGIK--HLPDVHKIHSLQKVLLDIQDN-INIHTIER-NSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNL 184 (350)
T ss_dssp EEEEEECCS--SCCCCTTCCBSSCEEEEEESC-TTCCEECT-TSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEEC
T ss_pred ccccccccc--cCCchhhcccchhhhhhhccc-cccccccc-cchhhcchhhhhhccccccccCCChhhccccchhHHhh
Confidence 0 2222221 111122333444555655441 11111111 011223345888999988888877 45567999999
Q ss_pred ecee-cceecccccCCCcccCCCccceEeeeCCCCCccCCcCCCCCCCCEEEEeccccccccccccCCCCCccccccccc
Q 044279 143 VDCS-LESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHF 221 (305)
Q Consensus 143 ~~~~-l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (305)
.+++ ++.++...+ ..+++|+.|++++| .++.+|. ..+.+|+.|.+.++..++.+|. +..
T Consensus 185 ~~~n~l~~i~~~~f-----~~l~~L~~LdLs~N-~l~~lp~-~~~~~L~~L~~l~~~~l~~lP~-------------l~~ 244 (350)
T 4ay9_X 185 SDNNNLEELPNDVF-----HGASGPVILDISRT-RIHSLPS-YGLENLKKLRARSTYNLKKLPT-------------LEK 244 (350)
T ss_dssp TTCTTCCCCCTTTT-----TTEECCSEEECTTS-CCCCCCS-SSCTTCCEEECTTCTTCCCCCC-------------TTT
T ss_pred ccCCcccCCCHHHh-----ccCcccchhhcCCC-CcCccCh-hhhccchHhhhccCCCcCcCCC-------------chh
Confidence 8766 899987653 78899999999999 8888874 4478899999989888777764 567
Q ss_pred cCccceeeccC
Q 044279 222 LSNLMVIDLQH 232 (305)
Q Consensus 222 ~~~L~~L~l~~ 232 (305)
+++|+.+++.+
T Consensus 245 l~~L~~l~l~~ 255 (350)
T 4ay9_X 245 LVALMEASLTY 255 (350)
T ss_dssp CCSCCEEECSC
T ss_pred CcChhhCcCCC
Confidence 89999999976
No 81
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.69 E-value=6.9e-18 Score=147.13 Aligned_cols=227 Identities=15% Similarity=0.169 Sum_probs=160.5
Q ss_pred CcccEEeCCCCCCccccchhhhcccccccccccCCccc--cCCcccccccccceeeccccceeeceEEEeeccccccccc
Q 044279 2 HALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIR--ELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTV 79 (305)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~ 79 (305)
+++++|++++| .++..+..+.++++|++|++++|.+. .+|..+..+++|++|++++|.+ ....
T Consensus 70 ~~l~~L~l~~n-~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l--------------~~~~ 134 (336)
T 2ast_B 70 QGVIAFRCPRS-FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRL--------------SDPI 134 (336)
T ss_dssp TTCSEEECTTC-EECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBC--------------CHHH
T ss_pred ccceEEEcCCc-cccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCccc--------------CHHH
Confidence 57899999999 77777666788999999999999876 2777889999999999999975 3456
Q ss_pred cccccCccCccceeEEEee-cCcccccccccCCCccccceEEEEEcC-CCccc--c---ccCC-CccEEEEecee--cc-
Q 044279 80 LAGLESLENIHDISITLCF-VDTHAFCRFQSSPKLQSCVKRLTVASP-WFSSL--D---FRMD-HLETLEIVDCS--LE- 148 (305)
Q Consensus 80 ~~~l~~l~~L~~L~l~~~~-~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~--~---~~~~-~L~~L~l~~~~--l~- 148 (305)
+..+..+++|+.|++++|. .....+... ....++|++|+++.+ .++.. + ..++ +|+.|++++|. ++
T Consensus 135 ~~~l~~~~~L~~L~L~~~~~l~~~~l~~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~ 211 (336)
T 2ast_B 135 VNTLAKNSNLVRLNLSGCSGFSEFALQTL---LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK 211 (336)
T ss_dssp HHHHTTCTTCSEEECTTCBSCCHHHHHHH---HHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCH
T ss_pred HHHHhcCCCCCEEECCCCCCCCHHHHHHH---HhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCH
Confidence 6778889999999998841 111112221 112345999999944 77653 3 7788 99999999994 33
Q ss_pred -eecccccCCCcccCCCccceEeeeCCCCCcc--CCcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCcc
Q 044279 149 -SINIYFGDQGRTYCFRNLRHLSVKDCHFMTD--LKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNL 225 (305)
Q Consensus 149 -~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 225 (305)
.++.. ...+++|++|++++|..+++ ++.+..+++|++|++++|..+..... ..++.+++|
T Consensus 212 ~~l~~~------~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-----------~~l~~~~~L 274 (336)
T 2ast_B 212 SDLSTL------VRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL-----------LELGEIPTL 274 (336)
T ss_dssp HHHHHH------HHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGG-----------GGGGGCTTC
T ss_pred HHHHHH------HhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHH-----------HHHhcCCCC
Confidence 33322 25789999999999954554 45677889999999999974322111 246789999
Q ss_pred ceeeccCcccCceecCCCCCC-CCCceEEeeCCCCCCCC-CCCCc
Q 044279 226 MVIDLQHLPSLTSICCRAVPL-PSLKTISVYDCPGLRKL-PLNSG 268 (305)
Q Consensus 226 ~~L~l~~~~~l~~~~~~~~~~-~~L~~L~l~~c~~l~~~-~~~~~ 268 (305)
+.|++++| +..-. ...+ .+++.|+++ |+.+... |..+.
T Consensus 275 ~~L~l~~~--i~~~~--~~~l~~~l~~L~l~-~n~l~~~~~~~~~ 314 (336)
T 2ast_B 275 KTLQVFGI--VPDGT--LQLLKEALPHLQIN-CSHFTTIARPTIG 314 (336)
T ss_dssp CEEECTTS--SCTTC--HHHHHHHSTTSEES-CCCSCCTTCSSCS
T ss_pred CEEeccCc--cCHHH--HHHHHhhCcceEEe-cccCccccCCccc
Confidence 99999999 22110 1112 236666685 4455543 44433
No 82
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.68 E-value=1.1e-18 Score=155.43 Aligned_cols=237 Identities=15% Similarity=0.119 Sum_probs=157.7
Q ss_pred CCcccEEeCCCCCCccc-----cchhhhcccccccccccCCccc----cCCccc-------ccccccceeeccccceeec
Q 044279 1 MHALAVLDLSYNFDLVE-----LPEAIGKLINLCHLNLSNTKIR----ELPAGI-------KYLKNLKILRLDVFSWFST 64 (305)
Q Consensus 1 l~~L~~L~l~~~~~~~~-----lp~~~~~l~~L~~L~l~~~~l~----~lp~~~-------~~l~~L~~L~l~~~~~~~~ 64 (305)
+++|++|++++| .++. ++..+..+++|++|++++|.+. .+|..+ ..+++|++|++++|.+..
T Consensus 31 ~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~- 108 (386)
T 2ca6_A 31 DDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP- 108 (386)
T ss_dssp CSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT-
T ss_pred CCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCH-
Confidence 478999999999 6664 3344678999999999997554 344444 688999999999998531
Q ss_pred eEEEeeccccccccccccccCccCccceeEEEeecCcccccccccCCCcc---------ccceEEEEEcCCCccc--c--
Q 044279 65 ELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQ---------SCVKRLTVASPWFSSL--D-- 131 (305)
Q Consensus 65 ~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~---------~~L~~L~l~~~~~~~~--~-- 131 (305)
.....++..+..+++|+.|++++|.........+....... ++|++|+++.|.++.. +
T Consensus 109 ---------~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 179 (386)
T 2ca6_A 109 ---------TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW 179 (386)
T ss_dssp ---------TTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHH
T ss_pred ---------HHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHH
Confidence 00113566788899999999988422111111222211111 4599999996666532 2
Q ss_pred ----ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCc-----cCC-cCCCCCCCCEEEEecccccc
Q 044279 132 ----FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMT-----DLK-WIRCAPNLQFLYVSDCQVLS 201 (305)
Q Consensus 132 ----~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~-----~~~-~~~~~~~L~~L~l~~~~~~~ 201 (305)
..+++|+.|++++|.+++.+........+..+++|+.|+|++| .++ .++ .+..+++|++|++++|....
T Consensus 180 ~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~ 258 (386)
T 2ca6_A 180 AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELGLNDCLLSA 258 (386)
T ss_dssp HHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred HHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCC-CCCcHHHHHHHHHHccCCCcCEEECCCCCCch
Confidence 4678999999999987643211100001367899999999999 563 232 46778999999999987432
Q ss_pred ccccccCCCCCccccccc--cccCccceeeccCcccCce-----ecCCC-CCCCCCceEEeeCCC
Q 044279 202 EIIGTYESPGTSEIEESH--HFLSNLMVIDLQHLPSLTS-----ICCRA-VPLPSLKTISVYDCP 258 (305)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~-----~~~~~-~~~~~L~~L~l~~c~ 258 (305)
.... .++..+ +.+++|++|+|++| .++. ++... ..+++|+.|++++|+
T Consensus 259 ~~~~--------~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 259 RGAA--------AVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHH--------HHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred hhHH--------HHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 2110 001133 34899999999999 5655 55544 358999999998884
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.67 E-value=8.1e-17 Score=138.99 Aligned_cols=219 Identities=15% Similarity=0.115 Sum_probs=143.6
Q ss_pred cccEEeCCCCCCccc--cch--hhhcccccccccccCCccc-cCCccc--ccccccceeeccccceeeceEEEeeccccc
Q 044279 3 ALAVLDLSYNFDLVE--LPE--AIGKLINLCHLNLSNTKIR-ELPAGI--KYLKNLKILRLDVFSWFSTELVALHHNFCC 75 (305)
Q Consensus 3 ~L~~L~l~~~~~~~~--lp~--~~~~l~~L~~L~l~~~~l~-~lp~~~--~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~ 75 (305)
.++.+.+.++ .+.. +.. ....+.+|++|++++|.+. ..|..+ +.+++|++|++++|.+..
T Consensus 65 ~l~~l~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~------------ 131 (310)
T 4glp_A 65 RVRRLTVGAA-QVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWAT------------ 131 (310)
T ss_dssp CCCEEEECSC-CCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSS------------
T ss_pred ceeEEEEeCC-cCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccc------------
Confidence 3567777777 4432 221 1234567999999999887 556666 889999999999998531
Q ss_pred ccc-c-cccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcc---cc-----ccCCCccEEEEece
Q 044279 76 ATT-V-LAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSS---LD-----FRMDHLETLEIVDC 145 (305)
Q Consensus 76 ~~~-~-~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~---~~-----~~~~~L~~L~l~~~ 145 (305)
... . ...+..+++|+.|+++.|.........+... ++|++|+++.|.+.. ++ ..+++|+.|++++|
T Consensus 132 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l----~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N 207 (310)
T 4glp_A 132 GRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF----PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT 207 (310)
T ss_dssp TTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC----TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS
T ss_pred hhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC----CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC
Confidence 100 1 1234578899999998832222221222222 348888888555432 11 46788999999998
Q ss_pred ecceecccccCCCcccCCCccceEeeeCCCCCccC-C-cCCCC---CCCCEEEEeccccccccccccCCCCCcccccccc
Q 044279 146 SLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDL-K-WIRCA---PNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHH 220 (305)
Q Consensus 146 ~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~-~-~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (305)
.++.++..... ....+++|++|++++| .+++. | .+..+ ++|++|++++|. ++.++. .+
T Consensus 208 ~l~~l~~~~~~--l~~~l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~------------~~- 270 (310)
T 4glp_A 208 GMETPTGVCAA--LAAAGVQPHSLDLSHN-SLRATVNPSAPRCMWSSALNSLNLSFAG-LEQVPK------------GL- 270 (310)
T ss_dssp CCCCHHHHHHH--HHHHTCCCSSEECTTS-CCCCCCCSCCSSCCCCTTCCCEECCSSC-CCSCCS------------CC-
T ss_pred CCCchHHHHHH--HHhcCCCCCEEECCCC-CCCccchhhHHhccCcCcCCEEECCCCC-CCchhh------------hh-
Confidence 87655532100 0146788999999998 55554 2 34444 789999999866 445543 22
Q ss_pred ccCccceeeccCcccCceecCCCCCCCCCceEEeeCCC
Q 044279 221 FLSNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCP 258 (305)
Q Consensus 221 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~ 258 (305)
+++|+.|++++| .++.++. ...+++|+.|++++++
T Consensus 271 -~~~L~~L~Ls~N-~l~~~~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 271 -PAKLRVLDLSSN-RLNRAPQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp -CSCCSCEECCSC-CCCSCCC-TTSCCCCSCEECSSTT
T ss_pred -cCCCCEEECCCC-cCCCCch-hhhCCCccEEECcCCC
Confidence 379999999998 7777654 5678899999998774
No 84
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.66 E-value=2.7e-16 Score=147.16 Aligned_cols=166 Identities=22% Similarity=0.289 Sum_probs=83.9
Q ss_pred hcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeeccccccccccccccCccCccceeEEEeecCcc
Q 044279 23 GKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTH 102 (305)
Q Consensus 23 ~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 102 (305)
..+.+|+.|++++|.+..+| .+..+++|++|++++|.+. .++. +..+++|+.|+++. +...
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~---------------~~~~-l~~l~~L~~L~Ls~--N~l~ 100 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLT---------------DIKP-LTNLKNLGWLFLDE--NKIK 100 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCC---------------CCGG-GGGCTTCCEEECCS--SCCC
T ss_pred hcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCC---------------CChh-hccCCCCCEEECcC--CCCC
Confidence 45555555555555555554 3555555555555555432 1111 55555555555555 3322
Q ss_pred cccccccCCCccccceEEEEEcCCCcccc--ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccC
Q 044279 103 AFCRFQSSPKLQSCVKRLTVASPWFSSLD--FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDL 180 (305)
Q Consensus 103 ~~~~l~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~ 180 (305)
.++.+..+ ++|+.|+++.+.+..++ ..+++|+.|++++|.++.++ . +..+++|+.|+|++| .++++
T Consensus 101 ~l~~l~~l----~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~-~------l~~l~~L~~L~Ls~N-~l~~~ 168 (605)
T 1m9s_A 101 DLSSLKDL----KKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDIT-V------LSRLTKLDTLSLEDN-QISDI 168 (605)
T ss_dssp CCTTSTTC----TTCCEEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCCG-G------GGSCTTCSEEECCSS-CCCCC
T ss_pred CChhhccC----CCCCEEEecCCCCCCCccccCCCccCEEECCCCccCCch-h------hcccCCCCEEECcCC-cCCCc
Confidence 22222222 22555555544444444 45556666666666555442 1 145566666666665 44444
Q ss_pred CcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCc
Q 044279 181 KWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHL 233 (305)
Q Consensus 181 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 233 (305)
+.+..+++|+.|+|++|. +..++ .+..+++|+.|+|++|
T Consensus 169 ~~l~~l~~L~~L~Ls~N~-i~~l~-------------~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 169 VPLAGLTKLQNLYLSKNH-ISDLR-------------ALAGLKNLDVLELFSQ 207 (605)
T ss_dssp GGGTTCTTCCEEECCSSC-CCBCG-------------GGTTCTTCSEEECCSE
T ss_pred hhhccCCCCCEEECcCCC-CCCCh-------------HHccCCCCCEEEccCC
Confidence 445556666666666653 22221 2445566666666665
No 85
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.65 E-value=1.2e-15 Score=127.58 Aligned_cols=56 Identities=23% Similarity=0.258 Sum_probs=35.5
Q ss_pred cccEEeCCCCCCccccchhhhcccccccccccCCccccCCc-ccccccccceeeccccce
Q 044279 3 ALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPA-GIKYLKNLKILRLDVFSW 61 (305)
Q Consensus 3 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~ 61 (305)
..++++++++ .++.+|..+. .+++.|++++|++..++. .++.+++|++|++++|.+
T Consensus 15 ~~~~l~~~~~-~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 71 (251)
T 3m19_A 15 GKKEVDCQGK-SLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL 71 (251)
T ss_dssp GGTEEECTTC-CCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred CCeEEecCCC-CccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcC
Confidence 3456677766 6666665443 466777777776665544 366677777777777654
No 86
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.64 E-value=3.7e-16 Score=133.62 Aligned_cols=164 Identities=20% Similarity=0.261 Sum_probs=90.0
Q ss_pred CcccEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeeccccccccccc
Q 044279 2 HALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLA 81 (305)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~ 81 (305)
++|++|++++| .++.++. +..+++|++|++++|++..++. +..+++|++|++++|.+. . ++
T Consensus 46 ~~L~~L~l~~~-~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~---------------~-~~ 106 (291)
T 1h6t_A 46 NSIDQIIANNS-DIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVK---------------D-LS 106 (291)
T ss_dssp HTCCEEECTTS-CCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC---------------C-GG
T ss_pred CcccEEEccCC-CcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCC---------------C-Ch
Confidence 34566666666 5555543 5556666666666666665544 566666666666666531 1 23
Q ss_pred cccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc--ccCCCccEEEEeceecceecccccCCCc
Q 044279 82 GLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD--FRMDHLETLEIVDCSLESINIYFGDQGR 159 (305)
Q Consensus 82 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 159 (305)
.+..+++|+.|++++ +....++.+... ++|+.|+++.+.++.++ ..+++|+.|++++|.+++++. +
T Consensus 107 ~l~~l~~L~~L~L~~--n~i~~~~~l~~l----~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~-l----- 174 (291)
T 1h6t_A 107 SLKDLKKLKSLSLEH--NGISDINGLVHL----PQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-L----- 174 (291)
T ss_dssp GGTTCTTCCEEECTT--SCCCCCGGGGGC----TTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-G-----
T ss_pred hhccCCCCCEEECCC--CcCCCChhhcCC----CCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccchh-h-----
Confidence 355566666666655 333333333222 22666666644444444 455666666666666555443 1
Q ss_pred ccCCCccceEeeeCCCCCccCCcCCCCCCCCEEEEeccc
Q 044279 160 TYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQ 198 (305)
Q Consensus 160 ~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~ 198 (305)
..+++|+.|++++| .+++++.+..+++|+.|++++|.
T Consensus 175 -~~l~~L~~L~L~~N-~i~~l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 175 -AGLTKLQNLYLSKN-HISDLRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp -TTCTTCCEEECCSS-CCCBCGGGTTCTTCSEEEEEEEE
T ss_pred -cCCCccCEEECCCC-cCCCChhhccCCCCCEEECcCCc
Confidence 44566666666666 55555555566666666666654
No 87
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.63 E-value=3.1e-16 Score=132.19 Aligned_cols=161 Identities=19% Similarity=0.286 Sum_probs=96.5
Q ss_pred ccEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeeccccccccccccc
Q 044279 4 LAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGL 83 (305)
Q Consensus 4 L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l 83 (305)
+..++++++ .+++++ .+..+++|++|++++|++..+| .+..+++|++|++++|.+. ..+. +
T Consensus 21 l~~l~l~~~-~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~---------------~~~~-l 81 (263)
T 1xeu_A 21 AVKQNLGKQ-SVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQIS---------------DLSP-L 81 (263)
T ss_dssp HHHHHHTCS-CTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCC---------------CCGG-G
T ss_pred HHHHHhcCC-Cccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccC---------------CChh-h
Confidence 445566666 666666 4677778888888888777776 6777788888888877642 2233 6
Q ss_pred cCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc--ccCCCccEEEEeceecceecccccCCCccc
Q 044279 84 ESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD--FRMDHLETLEIVDCSLESINIYFGDQGRTY 161 (305)
Q Consensus 84 ~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~ 161 (305)
..+++|+.|++++ +....++.+.. .+|+.|+++.+.++.++ ..+++|+.|++++|.+++++ . ..
T Consensus 82 ~~l~~L~~L~L~~--N~l~~l~~~~~-----~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~------l~ 147 (263)
T 1xeu_A 82 KDLTKLEELSVNR--NRLKNLNGIPS-----ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIV-M------LG 147 (263)
T ss_dssp TTCSSCCEEECCS--SCCSCCTTCCC-----SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG-G------GG
T ss_pred ccCCCCCEEECCC--CccCCcCcccc-----CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCCh-H------Hc
Confidence 7777777777777 33333322221 33666666644454444 45556666666665555543 1 14
Q ss_pred CCCccceEeeeCCCCCccCCcCCCCCCCCEEEEeccc
Q 044279 162 CFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQ 198 (305)
Q Consensus 162 ~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~ 198 (305)
.+++|+.|++++| .+++++.+..+++|+.|++++|.
T Consensus 148 ~l~~L~~L~L~~N-~i~~~~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 148 FLSKLEVLDLHGN-EITNTGGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp GCTTCCEEECTTS-CCCBCTTSTTCCCCCEEEEEEEE
T ss_pred cCCCCCEEECCCC-cCcchHHhccCCCCCEEeCCCCc
Confidence 4556666666665 44444555555666666666644
No 88
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.63 E-value=8.1e-16 Score=143.98 Aligned_cols=167 Identities=20% Similarity=0.275 Sum_probs=133.3
Q ss_pred CCcccEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeecccccccccc
Q 044279 1 MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVL 80 (305)
Q Consensus 1 l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~ 80 (305)
+++|+.|++++| .+..+| .+..+++|+.|++++|.+..++. +..+++|++|++++|.+. . +
T Consensus 42 L~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~---------------~-l 102 (605)
T 1m9s_A 42 LNSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIK---------------D-L 102 (605)
T ss_dssp HTTCCCCBCTTC-CCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCC---------------C-C
T ss_pred CCCCCEEECcCC-CCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCC---------------C-C
Confidence 367889999998 788876 48889999999999999888875 889999999999998752 2 3
Q ss_pred ccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc--ccCCCccEEEEeceecceecccccCCC
Q 044279 81 AGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD--FRMDHLETLEIVDCSLESINIYFGDQG 158 (305)
Q Consensus 81 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~ 158 (305)
+.+..+++|+.|+++. +....++.+..+ ++|+.|+++.|.+..++ ..+++|+.|++++|.++.++. +
T Consensus 103 ~~l~~l~~L~~L~Ls~--N~l~~l~~l~~l----~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l---- 171 (605)
T 1m9s_A 103 SSLKDLKKLKSLSLEH--NGISDINGLVHL----PQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-L---- 171 (605)
T ss_dssp TTSTTCTTCCEEECTT--SCCCCCGGGGGC----TTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGG-G----
T ss_pred hhhccCCCCCEEEecC--CCCCCCccccCC----CccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchh-h----
Confidence 4788889999999988 444444444443 34999999966666666 778899999999998777654 2
Q ss_pred cccCCCccceEeeeCCCCCccCCcCCCCCCCCEEEEeccccc
Q 044279 159 RTYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVL 200 (305)
Q Consensus 159 ~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~ 200 (305)
..+++|+.|+|++| .+++++.+..+++|+.|++++|...
T Consensus 172 --~~l~~L~~L~Ls~N-~i~~l~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 172 --AGLTKLQNLYLSKN-HISDLRALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp --TTCTTCCEEECCSS-CCCBCGGGTTCTTCSEEECCSEEEE
T ss_pred --ccCCCCCEEECcCC-CCCCChHHccCCCCCEEEccCCcCc
Confidence 67899999999998 7788888888999999999997754
No 89
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.62 E-value=3.2e-15 Score=138.64 Aligned_cols=175 Identities=16% Similarity=0.191 Sum_probs=110.5
Q ss_pred cccEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeecccccccccccc
Q 044279 3 ALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAG 82 (305)
Q Consensus 3 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~ 82 (305)
+|++|++++| .++.+|..+ +++|++|++++|++..+| +.+++|++|++++|.+. .++.
T Consensus 60 ~L~~L~Ls~n-~L~~lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~---------------~ip~- 117 (571)
T 3cvr_A 60 QFSELQLNRL-NLSSLPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLS---------------TLPE- 117 (571)
T ss_dssp TCSEEECCSS-CCSCCCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCS---------------CCCC-
T ss_pred CccEEEeCCC-CCCccCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCC---------------Ccch-
Confidence 6778888887 677777655 367888888888777777 44678888888887642 2333
Q ss_pred ccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCccccccCCCccEEEEeceecceecccccCCCcccC
Q 044279 83 LESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYC 162 (305)
Q Consensus 83 l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~ 162 (305)
+.. +|+.|+++. +....++. ..++|+.|+++.|.++.++..+++|+.|++++|.++.++. + .
T Consensus 118 l~~--~L~~L~Ls~--N~l~~lp~------~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~L~~lp~-l------~- 179 (571)
T 3cvr_A 118 LPA--SLKHLDVDN--NQLTMLPE------LPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLTFLPE-L------P- 179 (571)
T ss_dssp CCT--TCCEEECCS--SCCSCCCC------CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC-C------C-
T ss_pred hhc--CCCEEECCC--CcCCCCCC------cCccccEEeCCCCccCcCCCcCCCcCEEECCCCCCCCcch-h------h-
Confidence 433 777777777 33333322 2344777777766666655556677777777777666664 2 2
Q ss_pred CCccceEeeeCCCCCccCCcCCCCCCC-------CEEEEeccccccccccccCCCCCccccccccccCccceeeccCcc
Q 044279 163 FRNLRHLSVKDCHFMTDLKWIRCAPNL-------QFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLP 234 (305)
Q Consensus 163 ~~~L~~L~L~~~~~l~~~~~~~~~~~L-------~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 234 (305)
++|+.|+|++| .++.+|.+.. +| +.|++++|. +..++. .+..+++|+.|+|++|+
T Consensus 180 -~~L~~L~Ls~N-~L~~lp~~~~--~L~~~~~~L~~L~Ls~N~-l~~lp~------------~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 180 -ESLEALDVSTN-LLESLPAVPV--RNHHSEETEIFFRCRENR-ITHIPE------------NILSLDPTCTIILEDNP 241 (571)
T ss_dssp -TTCCEEECCSS-CCSSCCCCC----------CCEEEECCSSC-CCCCCG------------GGGGSCTTEEEECCSSS
T ss_pred -CCCCEEECcCC-CCCchhhHHH--hhhcccccceEEecCCCc-ceecCH------------HHhcCCCCCEEEeeCCc
Confidence 66777777777 5666554322 55 777777754 444443 45557777777777763
No 90
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.61 E-value=1e-15 Score=123.30 Aligned_cols=150 Identities=17% Similarity=0.200 Sum_probs=102.6
Q ss_pred hhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeeccccccccccccccCccCccceeEEEeecCc
Q 044279 22 IGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDT 101 (305)
Q Consensus 22 ~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 101 (305)
...+++|++|++++|.+..+| ++..+++|++|++++|.+ ..+..+..+++|+.|++++ +..
T Consensus 40 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~----------------~~~~~l~~l~~L~~L~l~~--n~l 100 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHA----------------TNYNPISGLSNLERLRIMG--KDV 100 (197)
T ss_dssp HHHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCC----------------SCCGGGTTCTTCCEEEEEC--TTC
T ss_pred hhhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCC----------------CcchhhhcCCCCCEEEeEC--Ccc
Confidence 478889999999999999888 789999999999999853 2345788899999999988 332
Q ss_pred cc--ccccccCCCccccceEEEEEcCCCccccccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCcc
Q 044279 102 HA--FCRFQSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTD 179 (305)
Q Consensus 102 ~~--~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~ 179 (305)
.. ...+ ..+++|+.|++++|.+++..... +..+++|++|++++|..+++
T Consensus 101 ~~~~~~~l------------------------~~l~~L~~L~Ls~n~i~~~~~~~-----l~~l~~L~~L~L~~n~~i~~ 151 (197)
T 4ezg_A 101 TSDKIPNL------------------------SGLTSLTLLDISHSAHDDSILTK-----INTLPKVNSIDLSYNGAITD 151 (197)
T ss_dssp BGGGSCCC------------------------TTCTTCCEEECCSSBCBGGGHHH-----HTTCSSCCEEECCSCTBCCC
T ss_pred CcccChhh------------------------cCCCCCCEEEecCCccCcHhHHH-----HhhCCCCCEEEccCCCCccc
Confidence 21 2111 23566777777776655433222 14567777777777743666
Q ss_pred CCcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCc
Q 044279 180 LKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHL 233 (305)
Q Consensus 180 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 233 (305)
++.+..+++|+.|++++|.. ..++ .+..+++|++|+++++
T Consensus 152 ~~~l~~l~~L~~L~l~~n~i-~~~~-------------~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 152 IMPLKTLPELKSLNIQFDGV-HDYR-------------GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp CGGGGGCSSCCEEECTTBCC-CCCT-------------TGGGCSSCCEEEECBC
T ss_pred cHhhcCCCCCCEEECCCCCC-cChH-------------HhccCCCCCEEEeeCc
Confidence 66666677777777777553 2221 3456677777777776
No 91
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.60 E-value=2.4e-17 Score=153.40 Aligned_cols=203 Identities=17% Similarity=0.120 Sum_probs=121.0
Q ss_pred hcccccccccccCCccccCCcccccccccceeeccccceeec-eEEEeeccccccccccccccCccCcccee-EEEeecC
Q 044279 23 GKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFST-ELVALHHNFCCATTVLAGLESLENIHDIS-ITLCFVD 100 (305)
Q Consensus 23 ~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~-~~~l~~~~~~~~~~~~~~l~~l~~L~~L~-l~~~~~~ 100 (305)
..+++|+.|++++|+++.+|..++.+++|++|+++++..... -.++... ......+..+..+++|+.|+ +.. +.
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~--~~~~~~~~~l~~l~~L~~L~~l~~--n~ 421 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRAL--DPLLYEKETLQYFSTLKAVDPMRA--AY 421 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--CTGGGHHHHHHHHHHHHHHCGGGH--HH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhc--ccccCCHHHHHHHHhcccCcchhh--cc
Confidence 445666666666666666666666666676666655421000 0000000 00223334455555665555 222 11
Q ss_pred cc----------cccccccCCCccccceEEEEEcCCCcccc--ccCCCccEEEEeceecceecccccCCCcccCCCccce
Q 044279 101 TH----------AFCRFQSSPKLQSCVKRLTVASPWFSSLD--FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRH 168 (305)
Q Consensus 101 ~~----------~~~~l~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~ 168 (305)
.. .+..+.. ..|+.|+++.|.++.++ ..+++|+.|++++|.++.+|..+ ..+++|+.
T Consensus 422 ~~~L~~l~l~~n~i~~l~~-----~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~------~~l~~L~~ 490 (567)
T 1dce_A 422 LDDLRSKFLLENSVLKMEY-----ADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPAL------AALRCLEV 490 (567)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----TTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGG------GGCTTCCE
T ss_pred cchhhhhhhhcccccccCc-----cCceEEEecCCCCCCCcCccccccCcEeecCcccccccchhh------hcCCCCCE
Confidence 00 1111111 12777777766666666 66778888888888877777544 67888888
Q ss_pred EeeeCCCCCccCCcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCceecCCCC----
Q 044279 169 LSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICCRAV---- 244 (305)
Q Consensus 169 L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~---- 244 (305)
|+|++| .++.+|.+..+++|+.|++++|. +..+. .+..++.+++|+.|++++| .++.++....
T Consensus 491 L~Ls~N-~l~~lp~l~~l~~L~~L~Ls~N~-l~~~~----------~p~~l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~ 557 (567)
T 1dce_A 491 LQASDN-ALENVDGVANLPRLQELLLCNNR-LQQSA----------AIQPLVSCPRLVLLNLQGN-SLCQEEGIQERLAE 557 (567)
T ss_dssp EECCSS-CCCCCGGGTTCSSCCEEECCSSC-CCSSS----------TTGGGGGCTTCCEEECTTS-GGGGSSSCTTHHHH
T ss_pred EECCCC-CCCCCcccCCCCCCcEEECCCCC-CCCCC----------CcHHHhcCCCCCEEEecCC-cCCCCccHHHHHHH
Confidence 888888 77777777788888888888865 33331 0136778888888888888 5665544332
Q ss_pred CCCCCceEE
Q 044279 245 PLPSLKTIS 253 (305)
Q Consensus 245 ~~~~L~~L~ 253 (305)
.+|+|+.|+
T Consensus 558 ~lp~L~~L~ 566 (567)
T 1dce_A 558 MLPSVSSIL 566 (567)
T ss_dssp HCTTCSEEE
T ss_pred HCcccCccC
Confidence 367777775
No 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.60 E-value=1.9e-15 Score=125.36 Aligned_cols=195 Identities=14% Similarity=0.133 Sum_probs=150.7
Q ss_pred CcccEEeCCCCCCccccch-hhhcccccccccccCCc-cccCCc-ccccccccceeeccc-cceeeceEEEeeccccccc
Q 044279 2 HALAVLDLSYNFDLVELPE-AIGKLINLCHLNLSNTK-IRELPA-GIKYLKNLKILRLDV-FSWFSTELVALHHNFCCAT 77 (305)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~-l~~lp~-~~~~l~~L~~L~l~~-~~~~~~~~~l~~~~~~~~~ 77 (305)
++|++|++++| .++.+|. .+.++++|++|++++|+ +..++. .+..+++|++|++++ |.+. .
T Consensus 31 ~~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~--------------~ 95 (239)
T 2xwt_C 31 PSTQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT--------------Y 95 (239)
T ss_dssp TTCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC--------------E
T ss_pred CcccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee--------------E
Confidence 46899999999 8898876 68999999999999996 888876 588999999999998 7642 2
Q ss_pred cccccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcC-CCcccc----ccCCCcc-EEEEeceecceec
Q 044279 78 TVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASP-WFSSLD----FRMDHLE-TLEIVDCSLESIN 151 (305)
Q Consensus 78 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~----~~~~~L~-~L~l~~~~l~~~~ 151 (305)
..+..+..+++|+.|++++ +....++.+.....+.. |+.|+++.+ .++.++ ..+++|+ .|++++|.++.++
T Consensus 96 i~~~~f~~l~~L~~L~l~~--n~l~~lp~~~~l~~L~~-L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~ 172 (239)
T 2xwt_C 96 IDPDALKELPLLKFLGIFN--TGLKMFPDLTKVYSTDI-FFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQ 172 (239)
T ss_dssp ECTTSEECCTTCCEEEEEE--ECCCSCCCCTTCCBCCS-EEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEEC
T ss_pred cCHHHhCCCCCCCEEeCCC--CCCcccccccccccccc-ccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccC
Confidence 2235678899999999999 44444544444433222 449999966 777766 5688999 9999999988888
Q ss_pred ccccCCCcccCCCccceEeeeCCCCCccCC--cCCCC-CCCCEEEEeccccccccccccCCCCCccccccccccCcccee
Q 044279 152 IYFGDQGRTYCFRNLRHLSVKDCHFMTDLK--WIRCA-PNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVI 228 (305)
Q Consensus 152 ~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~--~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 228 (305)
...+ .. ++|++|++++|..++.++ .+..+ ++|+.|++++|. +..++. ..+++|+.|
T Consensus 173 ~~~~-----~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~-l~~l~~--------------~~~~~L~~L 231 (239)
T 2xwt_C 173 GYAF-----NG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS-VTALPS--------------KGLEHLKEL 231 (239)
T ss_dssp TTTT-----TT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC-CCCCCC--------------TTCTTCSEE
T ss_pred Hhhc-----CC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc-cccCCh--------------hHhccCcee
Confidence 6553 33 789999999995477764 46778 999999999965 555554 268999999
Q ss_pred eccCccc
Q 044279 229 DLQHLPS 235 (305)
Q Consensus 229 ~l~~~~~ 235 (305)
++.++..
T Consensus 232 ~l~~~~~ 238 (239)
T 2xwt_C 232 IARNTWT 238 (239)
T ss_dssp ECTTC--
T ss_pred eccCccC
Confidence 9988754
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.60 E-value=1.1e-14 Score=121.82 Aligned_cols=174 Identities=18% Similarity=0.183 Sum_probs=119.8
Q ss_pred cccccccccCCccccCCcccccccccceeeccccceeeceEEEeeccccccccccccccCccCccceeEEEeecCccccc
Q 044279 26 INLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFC 105 (305)
Q Consensus 26 ~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 105 (305)
...++++++++.+..+|..+. +++++|++++|.+. ...+..+..+++|+.|++++ +....+
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~--------------~~~~~~~~~l~~L~~L~L~~--n~l~~~- 74 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLA--------------TLSDATFRGLTKLTWLNLDY--NQLQTL- 74 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCC--------------CCCTTTTTTCTTCCEEECTT--SCCCCC-
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcC--------------ccCHhHhcCcccCCEEECCC--CcCCcc-
Confidence 467889999999999998776 69999999999853 33345678888999888877 322211
Q ss_pred ccccCCCccccceEEEEEcCCCccccccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCCc--C
Q 044279 106 RFQSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLKW--I 183 (305)
Q Consensus 106 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~--~ 183 (305)
.... + ..+++|+.|++++|.++.++...+ ..+++|++|++++| .++.++. +
T Consensus 75 --~~~~-----~--------------~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~N-~l~~~~~~~~ 127 (251)
T 3m19_A 75 --SAGV-----F--------------DDLTELGTLGLANNQLASLPLGVF-----DHLTQLDKLYLGGN-QLKSLPSGVF 127 (251)
T ss_dssp --CTTT-----T--------------TTCTTCCEEECTTSCCCCCCTTTT-----TTCTTCCEEECCSS-CCCCCCTTTT
T ss_pred --CHhH-----h--------------ccCCcCCEEECCCCcccccChhHh-----cccCCCCEEEcCCC-cCCCcChhHh
Confidence 1100 0 346677788887777776665442 56778888888887 6666542 5
Q ss_pred CCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCceecC-CCCCCCCCceEEeeCCC
Q 044279 184 RCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICC-RAVPLPSLKTISVYDCP 258 (305)
Q Consensus 184 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~c~ 258 (305)
..+++|++|++++|. +..+++ ..++.+++|++|+++++ .++.++. ....+++|+.|++++++
T Consensus 128 ~~l~~L~~L~Ls~N~-l~~~~~-----------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 128 DRLTKLKELRLNTNQ-LQSIPA-----------GAFDKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp TTCTTCCEEECCSSC-CCCCCT-----------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred ccCCcccEEECcCCc-CCccCH-----------HHcCcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCc
Confidence 667788888888864 444443 24567788888888887 6666554 34467788888887764
No 94
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.59 E-value=6.4e-17 Score=142.69 Aligned_cols=236 Identities=12% Similarity=0.091 Sum_probs=141.3
Q ss_pred CcccEEeCCCCCCccccc-----hhhhccc-ccccccccCCccccC-Ccccccc-----cccceeeccccceeeceEEEe
Q 044279 2 HALAVLDLSYNFDLVELP-----EAIGKLI-NLCHLNLSNTKIREL-PAGIKYL-----KNLKILRLDVFSWFSTELVAL 69 (305)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp-----~~~~~l~-~L~~L~l~~~~l~~l-p~~~~~l-----~~L~~L~l~~~~~~~~~~~l~ 69 (305)
++|++|++++| .++..+ ..+.+++ +|++|++++|++... +..+..+ ++|++|++++|.+...
T Consensus 22 ~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~----- 95 (362)
T 3goz_A 22 HGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYK----- 95 (362)
T ss_dssp TTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS-----
T ss_pred CCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChH-----
Confidence 35888888888 677665 4467777 888888888888754 3345554 8888888888875310
Q ss_pred eccccccccccccccCc-cCccceeEEEeecCcccccccccC-CCccccceEEEEEcCCCcccc--------ccC-CCcc
Q 044279 70 HHNFCCATTVLAGLESL-ENIHDISITLCFVDTHAFCRFQSS-PKLQSCVKRLTVASPWFSSLD--------FRM-DHLE 138 (305)
Q Consensus 70 ~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~--------~~~-~~L~ 138 (305)
....+...+..+ ++|+.|++++|.........+... ...+.+|++|+++.|.+++.. ... ++|+
T Consensus 96 -----~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 170 (362)
T 3goz_A 96 -----SSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVN 170 (362)
T ss_dssp -----CHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred -----HHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCcccc
Confidence 001111224444 788888888843222222222221 111235888888866666332 233 3888
Q ss_pred EEEEeceecceecccccCCCcccCC-CccceEeeeCCCCCccC-----C-cCCC-CCCCCEEEEeccccccccccccCCC
Q 044279 139 TLEIVDCSLESINIYFGDQGRTYCF-RNLRHLSVKDCHFMTDL-----K-WIRC-APNLQFLYVSDCQVLSEIIGTYESP 210 (305)
Q Consensus 139 ~L~l~~~~l~~~~~~~~~~~~~~~~-~~L~~L~L~~~~~l~~~-----~-~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~ 210 (305)
.|++++|.+++.+....... ...+ ++|++|+|++| .+++. + .+.. .++|++|++++|.. ...+.
T Consensus 171 ~L~Ls~n~l~~~~~~~l~~~-l~~~~~~L~~L~Ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l-~~~~~----- 242 (362)
T 3goz_A 171 SLNLRGNNLASKNCAELAKF-LASIPASVTSLDLSAN-LLGLKSYAELAYIFSSIPNHVVSLNLCLNCL-HGPSL----- 242 (362)
T ss_dssp EEECTTSCGGGSCHHHHHHH-HHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHHSCTTCCEEECCSSCC-CCCCH-----
T ss_pred EeeecCCCCchhhHHHHHHH-HHhCCCCCCEEECCCC-CCChhHHHHHHHHHhcCCCCceEEECcCCCC-CcHHH-----
Confidence 88888888765553221000 1234 58888998888 56652 2 2223 35888898888764 22211
Q ss_pred CCccccccccccCccceeeccCcc--c-----CceecCCCCCCCCCceEEeeCCC
Q 044279 211 GTSEIEESHHFLSNLMVIDLQHLP--S-----LTSICCRAVPLPSLKTISVYDCP 258 (305)
Q Consensus 211 ~~~~~~~~~~~~~~L~~L~l~~~~--~-----l~~~~~~~~~~~~L~~L~l~~c~ 258 (305)
..+...+..+++|+.|++++|. . +..+......+++|+.|+++++.
T Consensus 243 --~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 243 --ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp --HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred --HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 0011234677888888888884 1 22344445567778888887774
No 95
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.58 E-value=1.9e-16 Score=140.80 Aligned_cols=206 Identities=16% Similarity=0.178 Sum_probs=144.3
Q ss_pred CCcccEEeCCCCCCcc----ccchhh-------hcccccccccccCCcccc-----CCcccccccccceeeccccceeec
Q 044279 1 MHALAVLDLSYNFDLV----ELPEAI-------GKLINLCHLNLSNTKIRE-----LPAGIKYLKNLKILRLDVFSWFST 64 (305)
Q Consensus 1 l~~L~~L~l~~~~~~~----~lp~~~-------~~l~~L~~L~l~~~~l~~-----lp~~~~~l~~L~~L~l~~~~~~~~ 64 (305)
+++|++|++++| .+. .+|..+ ..+++|++|++++|.+.. +|..+..+++|++|++++|.+...
T Consensus 59 ~~~L~~L~Ls~~-~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~ 137 (386)
T 2ca6_A 59 KKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQ 137 (386)
T ss_dssp CTTCCEEECCSC-CTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHH
T ss_pred CCCccEEeCccc-ccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHH
Confidence 578999999997 433 345444 788999999999998875 777889999999999999985310
Q ss_pred eEEEeeccccccccccccccCc---------cCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCccc-----
Q 044279 65 ELVALHHNFCCATTVLAGLESL---------ENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSL----- 130 (305)
Q Consensus 65 ~~~l~~~~~~~~~~~~~~l~~l---------~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~----- 130 (305)
....+...+..+ ++|+.|++++|......++.+.......++|++|+++.+.++..
T Consensus 138 ----------~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l 207 (386)
T 2ca6_A 138 ----------AGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHL 207 (386)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHH
T ss_pred ----------HHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHH
Confidence 011223334444 89999999884322233332222222223599999996666621
Q ss_pred ---c-ccCCCccEEEEeceecc-----eecccccCCCcccCCCccceEeeeCCCCCccC------CcC--CCCCCCCEEE
Q 044279 131 ---D-FRMDHLETLEIVDCSLE-----SINIYFGDQGRTYCFRNLRHLSVKDCHFMTDL------KWI--RCAPNLQFLY 193 (305)
Q Consensus 131 ---~-~~~~~L~~L~l~~~~l~-----~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~------~~~--~~~~~L~~L~ 193 (305)
. ..+++|+.|++++|.++ .++..+ ..+++|++|+|++| .+++. ..+ ..+++|++|+
T Consensus 208 ~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l------~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~~L~~L~ 280 (386)
T 2ca6_A 208 LLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL------KSWPNLRELGLNDC-LLSARGAAAVVDAFSKLENIGLQTLR 280 (386)
T ss_dssp HHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHG------GGCTTCCEEECTTC-CCCHHHHHHHHHHHHTCSSCCCCEEE
T ss_pred HHHHhhcCCCccEEECcCCCCCcHHHHHHHHHH------ccCCCcCEEECCCC-CCchhhHHHHHHHHhhccCCCeEEEE
Confidence 1 57889999999999874 333322 67899999999999 56553 233 4489999999
Q ss_pred Eeccccccc----cccccCCCCCccccccc-cccCccceeeccCcccCc
Q 044279 194 VSDCQVLSE----IIGTYESPGTSEIEESH-HFLSNLMVIDLQHLPSLT 237 (305)
Q Consensus 194 l~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~ 237 (305)
+++|..... ++. .+ .++++|++|++++| .++
T Consensus 281 L~~n~i~~~g~~~l~~------------~l~~~l~~L~~L~l~~N-~l~ 316 (386)
T 2ca6_A 281 LQYNEIELDAVRTLKT------------VIDEKMPDLLFLELNGN-RFS 316 (386)
T ss_dssp CCSSCCBHHHHHHHHH------------HHHHHCTTCCEEECTTS-BSC
T ss_pred CcCCcCCHHHHHHHHH------------HHHhcCCCceEEEccCC-cCC
Confidence 999875431 333 34 56899999999999 444
No 96
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.57 E-value=4.9e-17 Score=147.76 Aligned_cols=185 Identities=14% Similarity=0.164 Sum_probs=86.6
Q ss_pred CcccEEeCCCCCCcc-----ccchhhhcccccccccccCCccccC-Ccc-ccccc----ccceeeccccceeeceEEEee
Q 044279 2 HALAVLDLSYNFDLV-----ELPEAIGKLINLCHLNLSNTKIREL-PAG-IKYLK----NLKILRLDVFSWFSTELVALH 70 (305)
Q Consensus 2 ~~L~~L~l~~~~~~~-----~lp~~~~~l~~L~~L~l~~~~l~~l-p~~-~~~l~----~L~~L~l~~~~~~~~~~~l~~ 70 (305)
++|++|++++| .++ .++..+..+++|++|++++|.+... +.. ...++ +|++|++++|.+..
T Consensus 28 ~~L~~L~L~~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~------- 99 (461)
T 1z7x_W 28 QQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG------- 99 (461)
T ss_dssp TTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBG-------
T ss_pred CCccEEEccCC-CCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCH-------
Confidence 45556666655 444 2344455556666666666555421 111 12233 46666666655321
Q ss_pred ccccccccccccccCccCccceeEEEeecCcccccccccC-CCccccceEEEEEcCCCcccc--------ccCCCccEEE
Q 044279 71 HNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSS-PKLQSCVKRLTVASPWFSSLD--------FRMDHLETLE 141 (305)
Q Consensus 71 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~--------~~~~~L~~L~ 141 (305)
.....++..+..+++|+.|+++++.........+... ....++|++|+++.+.++... ..+++|+.|+
T Consensus 100 ---~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 176 (461)
T 1z7x_W 100 ---AGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELT 176 (461)
T ss_dssp ---GGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEE
T ss_pred ---HHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEE
Confidence 0012445667777888888887732211112221110 111223777777744444321 3456677777
Q ss_pred EeceecceecccccCCCcccCCCccceEeeeCCCCCccC------CcCCCCCCCCEEEEeccc
Q 044279 142 IVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDL------KWIRCAPNLQFLYVSDCQ 198 (305)
Q Consensus 142 l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~------~~~~~~~~L~~L~l~~~~ 198 (305)
+++|.+++.+......+.....++|++|++++| .+++. ..+..+++|++|++++|.
T Consensus 177 L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 238 (461)
T 1z7x_W 177 VSNNDINEAGVRVLCQGLKDSPCQLEALKLESC-GVTSDNCRDLCGIVASKASLRELALGSNK 238 (461)
T ss_dssp CCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTS-CCBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred CcCCCcchHHHHHHHHHHhcCCCCceEEEccCC-CCcHHHHHHHHHHHHhCCCccEEeccCCc
Confidence 776664443322110000012345666666665 33331 123345556666665543
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.54 E-value=2e-14 Score=133.42 Aligned_cols=192 Identities=17% Similarity=0.155 Sum_probs=145.0
Q ss_pred ccccccccCCccccCCcccccccccceeeccccceeeceEEEeeccccccccccccccCccCccceeEEEeecCcccccc
Q 044279 27 NLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCR 106 (305)
Q Consensus 27 ~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 106 (305)
+|+.|++++|++..+|..+. ++|++|++++|.+ ..++ ..+++|+.|++++ +....++.
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l---------------~~ip---~~l~~L~~L~Ls~--N~l~~ip~ 117 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNAL---------------ISLP---ELPASLEYLDACD--NRLSTLPE 117 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCC---------------SCCC---CCCTTCCEEECCS--SCCSCCCC
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCC---------------cccc---cccCCCCEEEccC--CCCCCcch
Confidence 89999999999999998774 8999999999984 2344 4578999999998 44444443
Q ss_pred cccCCCccccceEEEEEcCCCccccccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCCcCCCC
Q 044279 107 FQSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLKWIRCA 186 (305)
Q Consensus 107 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~ 186 (305)
+ ..+|+.|+++.|.++.++..+++|+.|++++|.++.++ ..+++|+.|++++| .++.+|.+.
T Consensus 118 l------~~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~~lp---------~~l~~L~~L~Ls~N-~L~~lp~l~-- 179 (571)
T 3cvr_A 118 L------PASLKHLDVDNNQLTMLPELPALLEYINADNNQLTMLP---------ELPTSLEVLSVRNN-QLTFLPELP-- 179 (571)
T ss_dssp C------CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCC---------CCCTTCCEEECCSS-CCSCCCCCC--
T ss_pred h------hcCCCEEECCCCcCCCCCCcCccccEEeCCCCccCcCC---------CcCCCcCEEECCCC-CCCCcchhh--
Confidence 2 22699999997777777767889999999999988777 35789999999999 777787643
Q ss_pred CCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCceecCCCCCCCCCceEEeeCCCCCCCCCCC
Q 044279 187 PNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKLPLN 266 (305)
Q Consensus 187 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 266 (305)
++|+.|++++|. +..++. .. . ......+.|+.|++++| .++.++.....+++|+.|++++|+.-..+|..
T Consensus 180 ~~L~~L~Ls~N~-L~~lp~--~~--~----~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~ 249 (571)
T 3cvr_A 180 ESLEALDVSTNL-LESLPA--VP--V----RNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNPLSSRIRES 249 (571)
T ss_dssp TTCCEEECCSSC-CSSCCC--CC--------------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSSCCHHHHHH
T ss_pred CCCCEEECcCCC-CCchhh--HH--H----hhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCcCCCcCHHH
Confidence 899999999975 444443 10 0 00111233399999999 88889887778999999999998755544444
Q ss_pred Cc
Q 044279 267 SG 268 (305)
Q Consensus 267 ~~ 268 (305)
+.
T Consensus 250 l~ 251 (571)
T 3cvr_A 250 LS 251 (571)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 98
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.53 E-value=5.9e-15 Score=127.27 Aligned_cols=197 Identities=13% Similarity=0.077 Sum_probs=143.7
Q ss_pred CcccEEeCCCCCCcc-ccchhh--hcccccccccccCCcccc-CC----cccccccccceeeccccceeeceEEEeeccc
Q 044279 2 HALAVLDLSYNFDLV-ELPEAI--GKLINLCHLNLSNTKIRE-LP----AGIKYLKNLKILRLDVFSWFSTELVALHHNF 73 (305)
Q Consensus 2 ~~L~~L~l~~~~~~~-~lp~~~--~~l~~L~~L~l~~~~l~~-lp----~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~ 73 (305)
++|++|++++| .+. ..|..+ ..+++|++|++++|.+.. .+ ..+..+++|++|++++|.+
T Consensus 91 ~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l------------ 157 (310)
T 4glp_A 91 SRLKELTLEDL-KITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHS------------ 157 (310)
T ss_dssp SCCCEEEEESC-CCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSS------------
T ss_pred CceeEEEeeCC-EeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCc------------
Confidence 56999999999 655 556666 899999999999998874 22 2345799999999999985
Q ss_pred cccccccccccCccCccceeEEEeecCccccccccc--CCCccccceEEEEEcCCCcccc-------ccCCCccEEEEec
Q 044279 74 CCATTVLAGLESLENIHDISITLCFVDTHAFCRFQS--SPKLQSCVKRLTVASPWFSSLD-------FRMDHLETLEIVD 144 (305)
Q Consensus 74 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~--~~~~~~~L~~L~l~~~~~~~~~-------~~~~~L~~L~l~~ 144 (305)
....+..+..+++|+.|++++ +.......+.. .....++|++|+++.|.++.++ ..+++|+.|++++
T Consensus 158 --~~~~~~~~~~l~~L~~L~Ls~--N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~ 233 (310)
T 4glp_A 158 --PAFSCEQVRAFPALTSLDLSD--NPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSH 233 (310)
T ss_dssp --CCCCTTSCCCCTTCCEEECCS--CTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTT
T ss_pred --chhhHHHhccCCCCCEEECCC--CCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCC
Confidence 334456788999999999998 44322111111 1122245999999977776544 4669999999999
Q ss_pred eeccee-cccccCCCcccCCCccceEeeeCCCCCccCCcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccC
Q 044279 145 CSLESI-NIYFGDQGRTYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLS 223 (305)
Q Consensus 145 ~~l~~~-~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (305)
|.+++. |..+.. ...+++|++|++++| .++.+|... +++|+.|++++|.. ..++ .+..++
T Consensus 234 N~l~~~~p~~~~~---~~~~~~L~~L~Ls~N-~l~~lp~~~-~~~L~~L~Ls~N~l-~~~~-------------~~~~l~ 294 (310)
T 4glp_A 234 NSLRATVNPSAPR---CMWSSALNSLNLSFA-GLEQVPKGL-PAKLRVLDLSSNRL-NRAP-------------QPDELP 294 (310)
T ss_dssp SCCCCCCCSCCSS---CCCCTTCCCEECCSS-CCCSCCSCC-CSCCSCEECCSCCC-CSCC-------------CTTSCC
T ss_pred CCCCccchhhHHh---ccCcCcCCEEECCCC-CCCchhhhh-cCCCCEEECCCCcC-CCCc-------------hhhhCC
Confidence 998776 433321 123479999999999 777776322 48999999999764 3332 246789
Q ss_pred ccceeeccCcc
Q 044279 224 NLMVIDLQHLP 234 (305)
Q Consensus 224 ~L~~L~l~~~~ 234 (305)
+|+.|++++++
T Consensus 295 ~L~~L~L~~N~ 305 (310)
T 4glp_A 295 EVDNLTLDGNP 305 (310)
T ss_dssp CCSCEECSSTT
T ss_pred CccEEECcCCC
Confidence 99999999983
No 99
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.52 E-value=2e-16 Score=143.65 Aligned_cols=247 Identities=15% Similarity=0.062 Sum_probs=119.2
Q ss_pred CCcccEEeCCCCCCcccc-chhhh-----cccccccccccCCcccc-----CCcccccccccceeeccccceeec-----
Q 044279 1 MHALAVLDLSYNFDLVEL-PEAIG-----KLINLCHLNLSNTKIRE-----LPAGIKYLKNLKILRLDVFSWFST----- 64 (305)
Q Consensus 1 l~~L~~L~l~~~~~~~~l-p~~~~-----~l~~L~~L~l~~~~l~~-----lp~~~~~l~~L~~L~l~~~~~~~~----- 64 (305)
+++|++|++++| .++.. +..+. ...+|++|++++|++.. ++..+..+++|++|++++|.+.+.
T Consensus 112 ~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l 190 (461)
T 1z7x_W 112 LPTLQELHLSDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVL 190 (461)
T ss_dssp CTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHH
T ss_pred CCceeEEECCCC-cCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHH
Confidence 356777777777 45422 12221 23456777776666542 334455566666666666654211
Q ss_pred -----------eEE-Eeecccccc--ccccccccCccCccceeEEEeecCccccccccc-CCCccccceEEEEEcCCCcc
Q 044279 65 -----------ELV-ALHHNFCCA--TTVLAGLESLENIHDISITLCFVDTHAFCRFQS-SPKLQSCVKRLTVASPWFSS 129 (305)
Q Consensus 65 -----------~~~-l~~~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~ 129 (305)
+.+ +.++.++.. ..++..+..+++|+.|+++++.........+.. .....++|++|+++.+.++.
T Consensus 191 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~ 270 (461)
T 1z7x_W 191 CQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITA 270 (461)
T ss_dssp HHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred HHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCH
Confidence 000 011111000 013344455666666666662111111111111 01112347777777445554
Q ss_pred -----cc---ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccC------CcCCCCCCCCEEEEe
Q 044279 130 -----LD---FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDL------KWIRCAPNLQFLYVS 195 (305)
Q Consensus 130 -----~~---~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~------~~~~~~~~L~~L~l~ 195 (305)
++ ..+++|+.|++++|.+++.+............++|++|++++| .++.. ..+..+++|++|+++
T Consensus 271 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls 349 (461)
T 1z7x_W 271 KGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC-SFTAACCSHFSSVLAQNRFLLELQIS 349 (461)
T ss_dssp HHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCSSCCEEECC
T ss_pred HHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCC-CCchHHHHHHHHHHhhCCCccEEEcc
Confidence 22 3466777777777665443322110000122356777777777 44432 123455777777777
Q ss_pred ccccccccccccCCCCCcccccccc-ccCccceeeccCcccCc-----eecCCCCCCCCCceEEeeCCC
Q 044279 196 DCQVLSEIIGTYESPGTSEIEESHH-FLSNLMVIDLQHLPSLT-----SICCRAVPLPSLKTISVYDCP 258 (305)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~l~-----~~~~~~~~~~~L~~L~l~~c~ 258 (305)
+|. +....... +...+. ..++|++|++++| .++ .++.....+++|++|++++|+
T Consensus 350 ~n~-i~~~~~~~-------l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 350 NNR-LEDAGVRE-------LCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp SSB-CHHHHHHH-------HHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred CCc-cccccHHH-------HHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 764 32221100 000111 2567888888887 554 344434457788888887773
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.52 E-value=4e-14 Score=114.82 Aligned_cols=176 Identities=13% Similarity=0.137 Sum_probs=120.9
Q ss_pred cEEeCCCCCCccccchhhhcccccccccccCCccccCCcc-cccccccceeeccccceeeceEEEeecccccccccc-cc
Q 044279 5 AVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAG-IKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVL-AG 82 (305)
Q Consensus 5 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~-~~ 82 (305)
+.++.+++ .+..+|..+ ..+|++|++++|++..++.. ++.+++|++|++++|.+ ..++ ..
T Consensus 10 ~~v~c~~~-~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l---------------~~~~~~~ 71 (208)
T 2o6s_A 10 TTVECYSQ-GRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKL---------------QSLPNGV 71 (208)
T ss_dssp TEEECCSS-CCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC---------------CCCCTTT
T ss_pred CEEEecCC-CccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCcc---------------CccChhh
Confidence 45677777 777777544 45889999999988877765 67889999999998874 2333 34
Q ss_pred ccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCccccccCCCccEEEEeceecceecccccCCCcccC
Q 044279 83 LESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYC 162 (305)
Q Consensus 83 l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~ 162 (305)
+..+++|+.|+++. +....+ .... ...+++|+.|++++|.++.++.... ..
T Consensus 72 ~~~l~~L~~L~Ls~--n~l~~~---~~~~-------------------~~~l~~L~~L~L~~N~l~~~~~~~~-----~~ 122 (208)
T 2o6s_A 72 FNKLTSLTYLNLST--NQLQSL---PNGV-------------------FDKLTQLKELALNTNQLQSLPDGVF-----DK 122 (208)
T ss_dssp TTTCTTCCEEECCS--SCCCCC---CTTT-------------------TTTCTTCCEEECCSSCCCCCCTTTT-----TT
T ss_pred cCCCCCcCEEECCC--CcCCcc---CHhH-------------------hcCccCCCEEEcCCCcCcccCHhHh-----cc
Confidence 57788888888877 322211 1100 0346788888888888777765542 56
Q ss_pred CCccceEeeeCCCCCccCC--cCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCceec
Q 044279 163 FRNLRHLSVKDCHFMTDLK--WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSIC 240 (305)
Q Consensus 163 ~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 240 (305)
+++|++|++++| .++.++ .+..+++|++|++++|.. .+.+++|+.|+++.+..-..++
T Consensus 123 l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~-------------------~~~~~~l~~L~~~~n~~~g~ip 182 (208)
T 2o6s_A 123 LTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPW-------------------DCTCPGIRYLSEWINKHSGVVR 182 (208)
T ss_dssp CTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCB-------------------CCCTTTTHHHHHHHHHCTTTBB
T ss_pred CCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCCe-------------------ecCCCCHHHHHHHHHhCCceee
Confidence 788888998888 666654 366788888998888753 2456788888888774444666
Q ss_pred CCCCCCC
Q 044279 241 CRAVPLP 247 (305)
Q Consensus 241 ~~~~~~~ 247 (305)
...+.++
T Consensus 183 ~~~~~l~ 189 (208)
T 2o6s_A 183 NSAGSVA 189 (208)
T ss_dssp CTTSSBC
T ss_pred ccCcccc
Confidence 5544443
No 101
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.52 E-value=1.1e-13 Score=130.23 Aligned_cols=124 Identities=18% Similarity=0.139 Sum_probs=77.2
Q ss_pred ceEEEEEcCCCcccc----ccCCCccEEEEecee-cceecccccCCCcccCCCccceEeeeCCCCCccCC--cCCCCCCC
Q 044279 117 VKRLTVASPWFSSLD----FRMDHLETLEIVDCS-LESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK--WIRCAPNL 189 (305)
Q Consensus 117 L~~L~l~~~~~~~~~----~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L 189 (305)
++.++++.+.+.... ..++.|+.|++++|. ...+.... +..+++|+.|+|++| .++.++ .+.++++|
T Consensus 447 l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~-----~~~l~~L~~L~Ls~N-~L~~l~~~~f~~l~~L 520 (635)
T 4g8a_A 447 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI-----FTELRNLTFLDLSQC-QLEQLSPTAFNSLSSL 520 (635)
T ss_dssp CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC-----CTTCTTCCEEECTTS-CCCEECTTTTTTCTTC
T ss_pred cccccccccccccccccccccchhhhhhhhhhcccccccCchh-----hhhccccCEEECCCC-ccCCcChHHHcCCCCC
Confidence 666666644444333 556777778877776 44433333 256777888888877 565543 46677778
Q ss_pred CEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCceecC-CCCCC-CCCceEEeeCCCC
Q 044279 190 QFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICC-RAVPL-PSLKTISVYDCPG 259 (305)
Q Consensus 190 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~-~~L~~L~l~~c~~ 259 (305)
++|+|++|. +..+++ ..+..+++|++|++++| .++.++. ....+ ++|+.|+++++|.
T Consensus 521 ~~L~Ls~N~-l~~l~~-----------~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~Np~ 579 (635)
T 4g8a_A 521 QVLNMSHNN-FFSLDT-----------FPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQNDF 579 (635)
T ss_dssp CEEECTTSC-CCBCCC-----------GGGTTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTTCCB
T ss_pred CEEECCCCc-CCCCCh-----------hHHhCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeCCCC
Confidence 888887754 444433 24567778888888877 5555433 33344 5677888777653
No 102
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.52 E-value=3e-15 Score=131.95 Aligned_cols=227 Identities=12% Similarity=0.031 Sum_probs=151.4
Q ss_pred EEeCCCCCCcc-ccchhhhcccccccccccCCccccCC-----ccccccc-ccceeeccccceeeceEEEeecccccccc
Q 044279 6 VLDLSYNFDLV-ELPEAIGKLINLCHLNLSNTKIRELP-----AGIKYLK-NLKILRLDVFSWFSTELVALHHNFCCATT 78 (305)
Q Consensus 6 ~L~l~~~~~~~-~lp~~~~~l~~L~~L~l~~~~l~~lp-----~~~~~l~-~L~~L~l~~~~~~~~~~~l~~~~~~~~~~ 78 (305)
+++++++ .++ .+|..+....+|++|++++|.+...+ ..+..++ +|++|++++|.+. ..
T Consensus 2 ~~~ls~n-~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~--------------~~ 66 (362)
T 3goz_A 2 NYKLTLH-PGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLG--------------FK 66 (362)
T ss_dssp EEECCCC-TTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGG--------------GS
T ss_pred ccccccc-cchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCC--------------HH
Confidence 5688888 666 45555666667999999999998776 4577888 9999999999863 22
Q ss_pred ccccccCc-----cCccceeEEEeecCcccccccccC-CCccccceEEEEEcCCCcccc--------cc-CCCccEEEEe
Q 044279 79 VLAGLESL-----ENIHDISITLCFVDTHAFCRFQSS-PKLQSCVKRLTVASPWFSSLD--------FR-MDHLETLEIV 143 (305)
Q Consensus 79 ~~~~l~~l-----~~L~~L~l~~~~~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~--------~~-~~~L~~L~l~ 143 (305)
.+..+..+ ++|+.|++++|.........+... ....++|++|+++.|.++... .. ..+|+.|+++
T Consensus 67 ~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls 146 (362)
T 3goz_A 67 NSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLR 146 (362)
T ss_dssp CHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECT
T ss_pred HHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEcc
Confidence 23344443 899999999843222222222221 111145999999977777655 22 4699999999
Q ss_pred ceecceecccccCCCcccCC-CccceEeeeCCCCCccCC------cCCCC-CCCCEEEEeccccccccccccCCCCCccc
Q 044279 144 DCSLESINIYFGDQGRTYCF-RNLRHLSVKDCHFMTDLK------WIRCA-PNLQFLYVSDCQVLSEIIGTYESPGTSEI 215 (305)
Q Consensus 144 ~~~l~~~~~~~~~~~~~~~~-~~L~~L~L~~~~~l~~~~------~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 215 (305)
+|.+++.+....... ...+ ++|++|++++| .+++.. .+..+ ++|++|++++|.. ..... ..+
T Consensus 147 ~N~l~~~~~~~l~~~-l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i-~~~~~-------~~l 216 (362)
T 3goz_A 147 GNDLGIKSSDELIQI-LAAIPANVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSANLL-GLKSY-------AEL 216 (362)
T ss_dssp TSCGGGSCHHHHHHH-HHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSCG-GGSCH-------HHH
T ss_pred CCcCCHHHHHHHHHH-HhcCCccccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCCCC-ChhHH-------HHH
Confidence 998775443221100 1234 49999999999 666543 23455 4999999999874 33111 001
Q ss_pred cccccc-cCccceeeccCcccCcee-----cCCCCCCCCCceEEeeCCC
Q 044279 216 EESHHF-LSNLMVIDLQHLPSLTSI-----CCRAVPLPSLKTISVYDCP 258 (305)
Q Consensus 216 ~~~~~~-~~~L~~L~l~~~~~l~~~-----~~~~~~~~~L~~L~l~~c~ 258 (305)
...+.. .++|++|++++| .++.. ......+++|+.|++++|.
T Consensus 217 ~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 217 AYIFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp HHHHHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred HHHHhcCCCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 123344 459999999998 66543 2334578999999999884
No 103
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.51 E-value=1e-14 Score=136.50 Aligned_cols=40 Identities=20% Similarity=0.221 Sum_probs=27.6
Q ss_pred cccccCccceeeccCcccCce--ecCCCCCCCCCceEEeeCCC
Q 044279 218 SHHFLSNLMVIDLQHLPSLTS--ICCRAVPLPSLKTISVYDCP 258 (305)
Q Consensus 218 ~~~~~~~L~~L~l~~~~~l~~--~~~~~~~~~~L~~L~l~~c~ 258 (305)
...++++|+.|+|++|+ ++. ++.....+++|+.|++++|.
T Consensus 483 ~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 483 FSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred HHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence 34567888888888885 442 23223357888888888885
No 104
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.50 E-value=1.2e-13 Score=111.04 Aligned_cols=152 Identities=18% Similarity=0.254 Sum_probs=110.9
Q ss_pred ccccccccceeeccccceeeceEEEeeccccccccccccccCccCccceeEEEeecCcccccccccCCCccccceEEEEE
Q 044279 44 GIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVA 123 (305)
Q Consensus 44 ~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~ 123 (305)
....+++|++|++++|.+ ..++ .+..+++|+.|++++ +....++.+
T Consensus 39 ~~~~l~~L~~L~l~~n~i---------------~~l~-~l~~l~~L~~L~l~~--n~~~~~~~l---------------- 84 (197)
T 4ezg_A 39 TEAQMNSLTYITLANINV---------------TDLT-GIEYAHNIKDLTINN--IHATNYNPI---------------- 84 (197)
T ss_dssp BHHHHHTCCEEEEESSCC---------------SCCT-TGGGCTTCSEEEEES--CCCSCCGGG----------------
T ss_pred ChhhcCCccEEeccCCCc---------------cChH-HHhcCCCCCEEEccC--CCCCcchhh----------------
Confidence 347788888888888764 2223 567777777777766 221111110
Q ss_pred cCCCccccccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCcc--CCcCCCCCCCCEEEEecccccc
Q 044279 124 SPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTD--LKWIRCAPNLQFLYVSDCQVLS 201 (305)
Q Consensus 124 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~--~~~~~~~~~L~~L~l~~~~~~~ 201 (305)
..+++|+.|++++|.+++..... +..+++|++|++++| .+++ +..+..+++|++|++++|..+.
T Consensus 85 --------~~l~~L~~L~l~~n~l~~~~~~~-----l~~l~~L~~L~Ls~n-~i~~~~~~~l~~l~~L~~L~L~~n~~i~ 150 (197)
T 4ezg_A 85 --------SGLSNLERLRIMGKDVTSDKIPN-----LSGLTSLTLLDISHS-AHDDSILTKINTLPKVNSIDLSYNGAIT 150 (197)
T ss_dssp --------TTCTTCCEEEEECTTCBGGGSCC-----CTTCTTCCEEECCSS-BCBGGGHHHHTTCSSCCEEECCSCTBCC
T ss_pred --------hcCCCCCEEEeECCccCcccChh-----hcCCCCCCEEEecCC-ccCcHhHHHHhhCCCCCEEEccCCCCcc
Confidence 45788999999998877643333 267899999999999 6665 4467889999999999987555
Q ss_pred ccccccCCCCCccccccccccCccceeeccCcccCceecCCCCCCCCCceEEeeCCC
Q 044279 202 EIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCP 258 (305)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~ 258 (305)
.++ .+..+++|+.|++++| .++.++ ....+++|+.|++++++
T Consensus 151 ~~~-------------~l~~l~~L~~L~l~~n-~i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 151 DIM-------------PLKTLPELKSLNIQFD-GVHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp CCG-------------GGGGCSSCCEEECTTB-CCCCCT-TGGGCSSCCEEEECBC-
T ss_pred ccH-------------hhcCCCCCCEEECCCC-CCcChH-HhccCCCCCEEEeeCcc
Confidence 543 3678999999999999 677776 46689999999998774
No 105
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.48 E-value=8.3e-14 Score=117.23 Aligned_cols=146 Identities=13% Similarity=0.159 Sum_probs=118.0
Q ss_pred CCcccEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeecccccccccc
Q 044279 1 MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVL 80 (305)
Q Consensus 1 l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~ 80 (305)
+++|++|++++| .++.+| .++.+++|++|++++|++..+|. ++.+++|++|++++|.+. .++
T Consensus 40 l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~---------------~l~ 101 (263)
T 1xeu_A 40 LSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLK---------------NLN 101 (263)
T ss_dssp HTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCS---------------CCT
T ss_pred cCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccC---------------CcC
Confidence 468999999999 888888 68999999999999999998887 999999999999999853 222
Q ss_pred ccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc--ccCCCccEEEEeceecceecccccCCC
Q 044279 81 AGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD--FRMDHLETLEIVDCSLESINIYFGDQG 158 (305)
Q Consensus 81 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~ 158 (305)
.+.. ++|+.|++++ +....++.+... ++|+.|+++.|.++.++ ..+++|+.|++++|.++++. .
T Consensus 102 -~~~~-~~L~~L~L~~--N~l~~~~~l~~l----~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~~-~----- 167 (263)
T 1xeu_A 102 -GIPS-ACLSRLFLDN--NELRDTDSLIHL----KNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTG-G----- 167 (263)
T ss_dssp -TCCC-SSCCEEECCS--SCCSBSGGGTTC----TTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBCT-T-----
T ss_pred -cccc-CcccEEEccC--CccCCChhhcCc----ccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcchH-H-----
Confidence 2333 8999999998 555555444443 34999999988787777 78899999999999987772 2
Q ss_pred cccCCCccceEeeeCCCCCccC
Q 044279 159 RTYCFRNLRHLSVKDCHFMTDL 180 (305)
Q Consensus 159 ~~~~~~~L~~L~L~~~~~l~~~ 180 (305)
...+++|+.|++++| .+...
T Consensus 168 -l~~l~~L~~L~l~~N-~~~~~ 187 (263)
T 1xeu_A 168 -LTRLKKVNWIDLTGQ-KCVNE 187 (263)
T ss_dssp -STTCCCCCEEEEEEE-EEECC
T ss_pred -hccCCCCCEEeCCCC-cccCC
Confidence 267899999999999 44443
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.46 E-value=2.9e-13 Score=110.79 Aligned_cols=147 Identities=14% Similarity=0.148 Sum_probs=74.1
Q ss_pred cEEeCCCCCCccccchhhhcccccccccccCCccccCCc-ccccccccceeeccccceeeceEEEeeccccccccccccc
Q 044279 5 AVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPA-GIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGL 83 (305)
Q Consensus 5 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l 83 (305)
+.++.+++ .++.+|..+. .+|+.|++++|++..+|. .+..+++|++|++++|.+. ...+..+
T Consensus 14 ~~v~c~~~-~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~--------------~~~~~~~ 76 (220)
T 2v9t_B 14 NIVDCRGK-GLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS--------------ELAPDAF 76 (220)
T ss_dssp TEEECTTS-CCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCC--------------EECTTTT
T ss_pred CEEEcCCC-CcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCC--------------CcCHHHh
Confidence 34566666 5666665433 456666666666665554 3566666666666666532 1223444
Q ss_pred cCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCccccccCCCccEEEEeceecceecccccCCCcccCC
Q 044279 84 ESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYCF 163 (305)
Q Consensus 84 ~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~ 163 (305)
..+++|+.|++++ +....++. .. ...+++|+.|++++|.++.++...+ ..+
T Consensus 77 ~~l~~L~~L~Ls~--N~l~~l~~---~~-------------------f~~l~~L~~L~L~~N~l~~~~~~~~-----~~l 127 (220)
T 2v9t_B 77 QGLRSLNSLVLYG--NKITELPK---SL-------------------FEGLFSLQLLLLNANKINCLRVDAF-----QDL 127 (220)
T ss_dssp TTCSSCCEEECCS--SCCCCCCT---TT-------------------TTTCTTCCEEECCSSCCCCCCTTTT-----TTC
T ss_pred hCCcCCCEEECCC--CcCCccCH---hH-------------------ccCCCCCCEEECCCCCCCEeCHHHc-----CCC
Confidence 5555555555544 21111100 00 0234555555555555554443321 445
Q ss_pred CccceEeeeCCCCCccCC--cCCCCCCCCEEEEeccc
Q 044279 164 RNLRHLSVKDCHFMTDLK--WIRCAPNLQFLYVSDCQ 198 (305)
Q Consensus 164 ~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~ 198 (305)
++|+.|+|++| .++.++ .+..+++|++|++++|.
T Consensus 128 ~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 128 HNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCC
Confidence 55666666555 444432 24445555555555544
No 107
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.45 E-value=1.2e-14 Score=136.10 Aligned_cols=127 Identities=15% Similarity=0.183 Sum_probs=61.2
Q ss_pred ccceEEEEEcCCCcccc-----ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeC----------CCCCcc
Q 044279 115 SCVKRLTVASPWFSSLD-----FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKD----------CHFMTD 179 (305)
Q Consensus 115 ~~L~~L~l~~~~~~~~~-----~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~----------~~~l~~ 179 (305)
++|++|+++.+.++... ..+++|+.|+++++ +.+...... ...+++|++|++.+ |..+++
T Consensus 293 ~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~-~~~~~l~~~----~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~ 367 (592)
T 3ogk_B 293 AQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV-IGDRGLEVL----AQYCKQLKRLRIERGADEQGMEDEEGLVSQ 367 (592)
T ss_dssp GGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHH----HHHCTTCCEEEEECCCCSSTTSSTTCCCCH
T ss_pred CCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCc-cCHHHHHHH----HHhCCCCCEEEeecCccccccccccCccCH
Confidence 34666666622233211 45566666666522 222111110 13456667776663 434443
Q ss_pred C--C-cCCCCCCCCEEEEeccccccccccccCCCCCcccccccc-ccCccceeeccC---cccCceecC------CCCCC
Q 044279 180 L--K-WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHH-FLSNLMVIDLQH---LPSLTSICC------RAVPL 246 (305)
Q Consensus 180 ~--~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~---~~~l~~~~~------~~~~~ 246 (305)
. . ....+++|++|++..+. +..... ..++ .+++|+.|++++ |..++..+. ....+
T Consensus 368 ~~~~~l~~~~~~L~~L~l~~~~-l~~~~~-----------~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~ 435 (592)
T 3ogk_B 368 RGLIALAQGCQELEYMAVYVSD-ITNESL-----------ESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGC 435 (592)
T ss_dssp HHHHHHHHHCTTCSEEEEEESC-CCHHHH-----------HHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHC
T ss_pred HHHHHHHhhCccCeEEEeecCC-ccHHHH-----------HHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhC
Confidence 2 1 12346667777764433 322111 1222 367777777763 334443221 12347
Q ss_pred CCCceEEeeCCC
Q 044279 247 PSLKTISVYDCP 258 (305)
Q Consensus 247 ~~L~~L~l~~c~ 258 (305)
++|+.|+++.|.
T Consensus 436 ~~L~~L~L~~~~ 447 (592)
T 3ogk_B 436 KKLRRFAFYLRQ 447 (592)
T ss_dssp TTCCEEEEECCG
T ss_pred CCCCEEEEecCC
Confidence 778888887665
No 108
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.43 E-value=1.8e-14 Score=134.94 Aligned_cols=62 Identities=13% Similarity=0.128 Sum_probs=39.2
Q ss_pred CCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCcee--cCCCCCCCCCceEEeeCCCC
Q 044279 186 APNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSI--CCRAVPLPSLKTISVYDCPG 259 (305)
Q Consensus 186 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~--~~~~~~~~~L~~L~l~~c~~ 259 (305)
+++|+.|++++|........ .....+++|+.|+|++|+. +.. ......+++|+.|++++|+.
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~-----------~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMH-----------HVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHH-----------HHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred chhccEeeccCCCCcHHHHH-----------HHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 56666666666553211111 1225689999999999854 422 22234578999999999965
No 109
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.43 E-value=5.6e-13 Score=108.02 Aligned_cols=180 Identities=15% Similarity=0.120 Sum_probs=132.1
Q ss_pred ccccccCCccccCCcccccccccceeeccccceeeceEEEeeccccccccccccccCccCccceeEEEeecCcccccccc
Q 044279 29 CHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQ 108 (305)
Q Consensus 29 ~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~ 108 (305)
+.++.+++.+..+|..+ .++|++|++++|.+. ......+..+++|+.|++++ +.... +.
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~--------------~~~~~~~~~l~~L~~L~l~~--n~l~~---~~ 68 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLK--------------SLPNGVFDELTSLTQLYLGG--NKLQS---LP 68 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCC--------------CCCTTTTTTCTTCSEEECCS--SCCCC---CC
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccC--------------cCChhhhcccccCcEEECCC--CccCc---cC
Confidence 56777778888888665 369999999999752 22233467888888888877 32221 11
Q ss_pred cCCCccccceEEEEEcCCCccccccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCCc--CCCC
Q 044279 109 SSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLKW--IRCA 186 (305)
Q Consensus 109 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~--~~~~ 186 (305)
... ...+++|+.|++++|.++.++.... ..+++|++|++++| .++.++. +..+
T Consensus 69 ~~~-------------------~~~l~~L~~L~Ls~n~l~~~~~~~~-----~~l~~L~~L~L~~N-~l~~~~~~~~~~l 123 (208)
T 2o6s_A 69 NGV-------------------FNKLTSLTYLNLSTNQLQSLPNGVF-----DKLTQLKELALNTN-QLQSLPDGVFDKL 123 (208)
T ss_dssp TTT-------------------TTTCTTCCEEECCSSCCCCCCTTTT-----TTCTTCCEEECCSS-CCCCCCTTTTTTC
T ss_pred hhh-------------------cCCCCCcCEEECCCCcCCccCHhHh-----cCccCCCEEEcCCC-cCcccCHhHhccC
Confidence 100 0357889999999999888776542 67899999999999 7777653 6789
Q ss_pred CCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCceecCCCCCCCCCceEEeeCCCCCCCCCCC
Q 044279 187 PNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKLPLN 266 (305)
Q Consensus 187 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 266 (305)
++|++|++++|. +..++. ..+..+++|++|++++++- .+.+++|+.|+++.+..-..+|..
T Consensus 124 ~~L~~L~l~~N~-l~~~~~-----------~~~~~l~~L~~L~l~~N~~-------~~~~~~l~~L~~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 124 TQLKDLRLYQNQ-LKSVPD-----------GVFDRLTSLQYIWLHDNPW-------DCTCPGIRYLSEWINKHSGVVRNS 184 (208)
T ss_dssp TTCCEEECCSSC-CSCCCT-----------TTTTTCTTCCEEECCSCCB-------CCCTTTTHHHHHHHHHCTTTBBCT
T ss_pred CcCCEEECCCCc-cceeCH-----------HHhccCCCccEEEecCCCe-------ecCCCCHHHHHHHHHhCCceeecc
Confidence 999999999976 444443 2467899999999999942 245788999999888777788888
Q ss_pred CccccCc
Q 044279 267 SGSAKNS 273 (305)
Q Consensus 267 ~~~~~~~ 273 (305)
+..++..
T Consensus 185 ~~~l~~~ 191 (208)
T 2o6s_A 185 AGSVAPD 191 (208)
T ss_dssp TSSBCTT
T ss_pred CccccCC
Confidence 8877643
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.42 E-value=5.1e-13 Score=117.61 Aligned_cols=147 Identities=18% Similarity=0.175 Sum_probs=87.7
Q ss_pred cEEeCCCCCCccccchhhhcccccccccccCCccccCCcc-cc-cccccceeeccccceeeceEEEeecccccccccccc
Q 044279 5 AVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAG-IK-YLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAG 82 (305)
Q Consensus 5 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~-~~-~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~ 82 (305)
+.++++++ .++.+|..+. ..++.|++++|++..++.. +. .+++|++|++++|.+. ...+..
T Consensus 21 ~~l~c~~~-~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~--------------~i~~~~ 83 (361)
T 2xot_A 21 NILSCSKQ-QLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN--------------FISSEA 83 (361)
T ss_dssp TEEECCSS-CCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC--------------EECTTT
T ss_pred CEEEeCCC-CcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC--------------ccChhh
Confidence 46777777 7777776543 3477888888888776655 44 7788888888887742 222345
Q ss_pred ccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCccccccCCCccEEEEeceecceecccccCCCcccC
Q 044279 83 LESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYC 162 (305)
Q Consensus 83 l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~ 162 (305)
+..+++|+.|++++ +....+.. .. ...+++|+.|++++|.++.++... +..
T Consensus 84 ~~~l~~L~~L~Ls~--N~l~~~~~---~~-------------------~~~l~~L~~L~L~~N~i~~~~~~~-----~~~ 134 (361)
T 2xot_A 84 FVPVPNLRYLDLSS--NHLHTLDE---FL-------------------FSDLQALEVLLLYNNHIVVVDRNA-----FED 134 (361)
T ss_dssp TTTCTTCCEEECCS--SCCCEECT---TT-------------------TTTCTTCCEEECCSSCCCEECTTT-----TTT
T ss_pred ccCCCCCCEEECCC--CcCCcCCH---HH-------------------hCCCcCCCEEECCCCcccEECHHH-----hCC
Confidence 67777777777766 32222111 00 034566666666666665554333 255
Q ss_pred CCccceEeeeCCCCCccCCc--C---CCCCCCCEEEEeccc
Q 044279 163 FRNLRHLSVKDCHFMTDLKW--I---RCAPNLQFLYVSDCQ 198 (305)
Q Consensus 163 ~~~L~~L~L~~~~~l~~~~~--~---~~~~~L~~L~l~~~~ 198 (305)
+++|+.|+|++| .++.++. + ..+++|+.|++++|.
T Consensus 135 l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 135 MAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp CTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred cccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence 666777777666 5555442 2 346667777776644
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.42 E-value=9e-13 Score=108.54 Aligned_cols=58 Identities=16% Similarity=0.170 Sum_probs=31.5
Q ss_pred CCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCC--cCCCCCCCCEEEEeccc
Q 044279 134 MDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK--WIRCAPNLQFLYVSDCQ 198 (305)
Q Consensus 134 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~ 198 (305)
+++|+.|++++|.++.++..+ ..+++|+.|++++| .++.++ .+..+++|+.|++++|.
T Consensus 111 l~~L~~L~Ls~N~l~~lp~~~------~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 111 LVHLKELFMCCNKLTELPRGI------ERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CTTCCEEECCSSCCCSCCTTG------GGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred chhhCeEeccCCcccccCccc------ccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCC
Confidence 455566666655555554333 34556666666665 444443 24455566666666554
No 112
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.40 E-value=1.5e-14 Score=135.36 Aligned_cols=60 Identities=17% Similarity=0.167 Sum_probs=30.2
Q ss_pred CCccceEeeeCCCCCccC--CcC-CCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcc
Q 044279 163 FRNLRHLSVKDCHFMTDL--KWI-RCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLP 234 (305)
Q Consensus 163 ~~~L~~L~L~~~~~l~~~--~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 234 (305)
+++|+.|++++| .+++. ..+ ..+++|++|++++|........ .....+++|+.|++++|+
T Consensus 455 ~~~L~~L~L~~~-~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~-----------~~~~~l~~L~~L~l~~~~ 517 (594)
T 2p1m_B 455 AKKMEMLSVAFA-GDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALL-----------ANASKLETMRSLWMSSCS 517 (594)
T ss_dssp CTTCCEEEEESC-CSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHH-----------HTGGGGGGSSEEEEESSC
T ss_pred chhccEeeccCC-CCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHH-----------HHHHhCCCCCEEeeeCCC
Confidence 455666666665 33332 111 3456666666666654111111 123346666666666664
No 113
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.39 E-value=4.7e-13 Score=104.66 Aligned_cols=130 Identities=18% Similarity=0.225 Sum_probs=93.6
Q ss_pred hcccccccccccCCccc--cCCcccccccccceeeccccceeeceEEEeeccccccccccccccCccCccceeEEEeecC
Q 044279 23 GKLINLCHLNLSNTKIR--ELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVD 100 (305)
Q Consensus 23 ~~l~~L~~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 100 (305)
...++|++|++++|++. .+|..+..+++|++|++++|.+. .. ..+..+++|+.|++++ +.
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~---------------~~-~~~~~l~~L~~L~Ls~--N~ 82 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI---------------SV-SNLPKLPKLKKLELSE--NR 82 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCC---------------CC-SSCCCCSSCCEEEEES--CC
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCC---------------Ch-hhhccCCCCCEEECcC--Cc
Confidence 44577888999888887 88877888889999999888742 22 6778888888888888 32
Q ss_pred ccc-ccccccCCCccccceEEEEEcCCCccccccCCCccEEEEeceecceecc-cccCCCcccCCCccceEeeeCCCCCc
Q 044279 101 THA-FCRFQSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINI-YFGDQGRTYCFRNLRHLSVKDCHFMT 178 (305)
Q Consensus 101 ~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~~~~~~L~~L~L~~~~~l~ 178 (305)
... ++... ..+++|+.|++++|.+++++. .. +..+++|+.|++++| .++
T Consensus 83 l~~~~~~~~-----------------------~~l~~L~~L~Ls~N~l~~~~~~~~-----l~~l~~L~~L~l~~N-~l~ 133 (168)
T 2ell_A 83 IFGGLDMLA-----------------------EKLPNLTHLNLSGNKLKDISTLEP-----LKKLECLKSLDLFNC-EVT 133 (168)
T ss_dssp CCSCCCHHH-----------------------HHCTTCCEEECBSSSCCSSGGGGG-----GSSCSCCCEEECCSS-GGG
T ss_pred CchHHHHHH-----------------------hhCCCCCEEeccCCccCcchhHHH-----HhcCCCCCEEEeeCC-cCc
Confidence 222 11110 347788888888888777652 22 267888999999888 555
Q ss_pred cCC-----cCCCCCCCCEEEEecccc
Q 044279 179 DLK-----WIRCAPNLQFLYVSDCQV 199 (305)
Q Consensus 179 ~~~-----~~~~~~~L~~L~l~~~~~ 199 (305)
.++ .+..+++|++|++++|..
T Consensus 134 ~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 134 NLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp TSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred chHHHHHHHHHhCccCcEecCCCCCh
Confidence 554 366788899999988764
No 114
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.37 E-value=3e-12 Score=111.18 Aligned_cols=215 Identities=17% Similarity=0.078 Sum_probs=124.3
Q ss_pred CCcccEEeCCCCCCcc--------------------ccch-hhhc--------ccccccccccCCccccCCcc-cccccc
Q 044279 1 MHALAVLDLSYNFDLV--------------------ELPE-AIGK--------LINLCHLNLSNTKIRELPAG-IKYLKN 50 (305)
Q Consensus 1 l~~L~~L~l~~~~~~~--------------------~lp~-~~~~--------l~~L~~L~l~~~~l~~lp~~-~~~l~~ 50 (305)
+++|++||+++| .+. .+|+ .+.+ +.+|+.+++.. +++.++.. |.+|++
T Consensus 48 l~~L~~LdLs~n-~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~ 125 (329)
T 3sb4_A 48 FPSLKVLDISNA-EIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDN 125 (329)
T ss_dssp CTTCCEEEEEEE-EECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTT
T ss_pred hccCeEEecCcc-eeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcc
Confidence 478999999999 665 3443 3667 88899999888 77777665 888899
Q ss_pred cceeeccccceeeceEEEeeccccccccccccccCccCccceeEEE-----------------ee--------cCccccc
Q 044279 51 LKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITL-----------------CF--------VDTHAFC 105 (305)
Q Consensus 51 L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~-----------------~~--------~~~~~~~ 105 (305)
|++++++.+.+.. -....+..+.++..+.... |. .....++
T Consensus 126 L~~l~l~~n~i~~--------------i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~ 191 (329)
T 3sb4_A 126 LKICQIRKKTAPN--------------LLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLE 191 (329)
T ss_dssp CCEEEBCCSSCCE--------------ECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHH
T ss_pred cceEEcCCCCccc--------------cchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHH
Confidence 9999998886432 1112223333332221111 00 0000000
Q ss_pred c-cccCCCccccceEEEEEcCCCcccc-----ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCcc
Q 044279 106 R-FQSSPKLQSCVKRLTVASPWFSSLD-----FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTD 179 (305)
Q Consensus 106 ~-l~~~~~~~~~L~~L~l~~~~~~~~~-----~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~ 179 (305)
. +....-...+++.+.+... +.... ..+++|+.+++++|.++.++...+ ..+.+|++|++.++ ++.
T Consensus 192 ~~~~~~~~~~~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF-----~~~~~L~~l~l~~n--i~~ 263 (329)
T 3sb4_A 192 DEIMKAGLQPRDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKTNATTIPDFTF-----AQKKYLLKIKLPHN--LKT 263 (329)
T ss_dssp HHHHHTTCCGGGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTT-----TTCTTCCEEECCTT--CCE
T ss_pred HHHhhcccCccccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCCCcceecHhhh-----hCCCCCCEEECCcc--cce
Confidence 0 0000001112333433311 11111 236778888888777777776653 67778888888775 555
Q ss_pred CC--cCCCCCCCC-EEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCceecCCC-CCCCCCceEE
Q 044279 180 LK--WIRCAPNLQ-FLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICCRA-VPLPSLKTIS 253 (305)
Q Consensus 180 ~~--~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~ 253 (305)
++ .|..|++|+ .+.+.+ .++.+.. ..+.++++|+.+++..+ .++.++... ..+++|+.++
T Consensus 264 I~~~aF~~~~~L~~~l~l~~--~l~~I~~-----------~aF~~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 264 IGQRVFSNCGRLAGTLELPA--SVTAIEF-----------GAFMGCDNLRYVLATGD-KITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp ECTTTTTTCTTCCEEEEECT--TCCEECT-----------TTTTTCTTEEEEEECSS-CCCEECTTTTCTTCCCCEEE
T ss_pred ehHHHhhCChhccEEEEEcc--cceEEch-----------hhhhCCccCCEEEeCCC-ccCccchhhhcCCcchhhhc
Confidence 43 566778888 888877 3555544 35667788888887776 677766543 3566777665
No 115
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.36 E-value=2.3e-12 Score=105.45 Aligned_cols=149 Identities=18% Similarity=0.147 Sum_probs=106.9
Q ss_pred cEEeCCCCCCccccchhhhcccccccccccCCccccCCc--ccccccccceeeccccceeeceEEEeecccccccccccc
Q 044279 5 AVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPA--GIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAG 82 (305)
Q Consensus 5 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~ 82 (305)
+.++++++ .++++|..+. ..+++|++++|++..++. .++.+++|++|++++|.+. ...+..
T Consensus 14 ~~l~~s~n-~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~--------------~i~~~~ 76 (220)
T 2v70_A 14 TTVDCSNQ-KLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT--------------DIEEGA 76 (220)
T ss_dssp TEEECCSS-CCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC--------------EECTTT
T ss_pred CEeEeCCC-CcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC--------------EECHHH
Confidence 57888888 7888887553 346888999988887643 3788889999999888752 222346
Q ss_pred ccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCccccccCCCccEEEEeceecceecccccCCCcccC
Q 044279 83 LESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYC 162 (305)
Q Consensus 83 l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~ 162 (305)
+..+++|+.|++++ +....+.. .....+++|+.|++++|.++.++...+ ..
T Consensus 77 ~~~l~~L~~L~Ls~--N~l~~~~~----------------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~-----~~ 127 (220)
T 2v70_A 77 FEGASGVNEILLTS--NRLENVQH----------------------KMFKGLESLKTLMLRSNRITCVGNDSF-----IG 127 (220)
T ss_dssp TTTCTTCCEEECCS--SCCCCCCG----------------------GGGTTCSSCCEEECTTSCCCCBCTTSS-----TT
T ss_pred hCCCCCCCEEECCC--CccCccCH----------------------hHhcCCcCCCEEECCCCcCCeECHhHc-----CC
Confidence 77778888887777 32211110 000457889999999998887765442 67
Q ss_pred CCccceEeeeCCCCCccC-C-cCCCCCCCCEEEEeccccc
Q 044279 163 FRNLRHLSVKDCHFMTDL-K-WIRCAPNLQFLYVSDCQVL 200 (305)
Q Consensus 163 ~~~L~~L~L~~~~~l~~~-~-~~~~~~~L~~L~l~~~~~~ 200 (305)
+++|+.|+|++| .++.+ + .+..+++|++|++++|...
T Consensus 128 l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 128 LSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 899999999998 66665 2 5778899999999998754
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.36 E-value=2.2e-15 Score=140.10 Aligned_cols=183 Identities=15% Similarity=0.111 Sum_probs=126.6
Q ss_pred cccccccceeeccccceeeceEEEeeccccccccccccccCccCccceeEEEeecCccc----------ccccccCCCcc
Q 044279 45 IKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHA----------FCRFQSSPKLQ 114 (305)
Q Consensus 45 ~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~----------~~~l~~~~~~~ 114 (305)
+..+++|+.|++++|. ...+|..++.+++|+.|++..+.. ... ...........
T Consensus 345 ~~~~~~L~~L~Ls~n~---------------L~~Lp~~i~~l~~L~~L~l~~n~~-l~~l~~ll~~~~~~~~~~~~l~~l 408 (567)
T 1dce_A 345 SATDEQLFRCELSVEK---------------STVLQSELESCKELQELEPENKWC-LLTIILLMRALDPLLYEKETLQYF 408 (567)
T ss_dssp CSTTTTSSSCCCCHHH---------------HHHHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHHHCTGGGHHHHHHHH
T ss_pred cccCccceeccCChhh---------------HHhhHHHHHHHHHHHHhccccchh-hhhHHHHHHhcccccCCHHHHHHH
Confidence 3678899999999998 457899999999999998755210 000 00000000111
Q ss_pred ccceEEE-EEcCCCcccc-----------ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCC-
Q 044279 115 SCVKRLT-VASPWFSSLD-----------FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK- 181 (305)
Q Consensus 115 ~~L~~L~-l~~~~~~~~~-----------~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~- 181 (305)
.+|+.|+ ++.+.+.++. .....|+.|++++|.++.+|. + ..+++|+.|+|++| .++.+|
T Consensus 409 ~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~------~~l~~L~~L~Ls~N-~l~~lp~ 480 (567)
T 1dce_A 409 STLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-L------EQLLLVTHLDLSHN-RLRALPP 480 (567)
T ss_dssp HHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-G------GGGTTCCEEECCSS-CCCCCCG
T ss_pred HhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCCcC-c------cccccCcEeecCcc-cccccch
Confidence 2355554 2222211111 123468999999999888774 3 67899999999999 777775
Q ss_pred cCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCcee--cCCCCCCCCCceEEeeCCCC
Q 044279 182 WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSI--CCRAVPLPSLKTISVYDCPG 259 (305)
Q Consensus 182 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~--~~~~~~~~~L~~L~l~~c~~ 259 (305)
.+..+++|+.|++++|.. ..++ .++.+++|+.|++++| .++.+ +.....+++|+.|+++++ .
T Consensus 481 ~~~~l~~L~~L~Ls~N~l-~~lp-------------~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N-~ 544 (567)
T 1dce_A 481 ALAALRCLEVLQASDNAL-ENVD-------------GVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGN-S 544 (567)
T ss_dssp GGGGCTTCCEEECCSSCC-CCCG-------------GGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTS-G
T ss_pred hhhcCCCCCEEECCCCCC-CCCc-------------ccCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCC-c
Confidence 677899999999999764 3332 4678999999999998 77777 666778999999999877 5
Q ss_pred CCCCCCCC
Q 044279 260 LRKLPLNS 267 (305)
Q Consensus 260 l~~~~~~~ 267 (305)
+..+|..+
T Consensus 545 l~~~~~~~ 552 (567)
T 1dce_A 545 LCQEEGIQ 552 (567)
T ss_dssp GGGSSSCT
T ss_pred CCCCccHH
Confidence 66665544
No 117
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.36 E-value=3.9e-12 Score=104.73 Aligned_cols=148 Identities=20% Similarity=0.115 Sum_probs=80.6
Q ss_pred cccccccCCccccCCcccccccccceeeccccceeeceEEEeeccccccccccccccCccCccceeEEEeecCccccccc
Q 044279 28 LCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRF 107 (305)
Q Consensus 28 L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l 107 (305)
-..++.+++++..+|..+. ++|++|++++|.+. ...+..+..+++|+.|++++ +....+
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~--------------~~~~~~~~~l~~L~~L~L~~--N~l~~i--- 79 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQIT--------------KLEPGVFDSLINLKELYLGS--NQLGAL--- 79 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCC--------------CCCTTTTTTCTTCCEEECCS--SCCCCC---
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccC--------------ccCHHHhhCccCCcEEECCC--CCCCCc---
Confidence 4556777777777776554 67777777777642 22234455555555555554 211111
Q ss_pred ccCCCccccceEEEEEcCCCccccccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCC-cCCCC
Q 044279 108 QSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK-WIRCA 186 (305)
Q Consensus 108 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~-~~~~~ 186 (305)
.... ...+++|+.|++++|.++.++...+ ..+++|+.|++++| .++.++ .+..+
T Consensus 80 ~~~~-------------------~~~l~~L~~L~Ls~N~l~~l~~~~~-----~~l~~L~~L~Ls~N-~l~~lp~~~~~l 134 (229)
T 3e6j_A 80 PVGV-------------------FDSLTQLTVLDLGTNQLTVLPSAVF-----DRLVHLKELFMCCN-KLTELPRGIERL 134 (229)
T ss_dssp CTTT-------------------TTTCTTCCEEECCSSCCCCCCTTTT-----TTCTTCCEEECCSS-CCCSCCTTGGGC
T ss_pred Chhh-------------------cccCCCcCEEECCCCcCCccChhHh-----CcchhhCeEeccCC-cccccCcccccC
Confidence 0000 0235566666666666655554432 45666666666666 455543 34456
Q ss_pred CCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCc
Q 044279 187 PNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHL 233 (305)
Q Consensus 187 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 233 (305)
++|++|++++|. +..++. ..+..+++|+.|++.++
T Consensus 135 ~~L~~L~L~~N~-l~~~~~-----------~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 135 THLTHLALDQNQ-LKSIPH-----------GAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp TTCSEEECCSSC-CCCCCT-----------TTTTTCTTCCEEECTTS
T ss_pred CCCCEEECCCCc-CCccCH-----------HHHhCCCCCCEEEeeCC
Confidence 666666666643 333332 23455666666666665
No 118
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.35 E-value=5.9e-12 Score=102.95 Aligned_cols=148 Identities=13% Similarity=0.172 Sum_probs=96.4
Q ss_pred ccccccCCccccCCcccccccccceeeccccceeeceEEEeeccccccccccccccCccCccceeEEEeecCcccccccc
Q 044279 29 CHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQ 108 (305)
Q Consensus 29 ~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~ 108 (305)
+.++++++++..+|..+. ++|++|++++|.+. ...+..+..+++|+.|++++ +....+ .
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~--------------~i~~~~~~~l~~L~~L~Ls~--N~i~~~---~ 72 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIK--------------VIPPGAFSPYKKLRRIDLSN--NQISEL---A 72 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCC--------------EECTTSSTTCTTCCEEECCS--SCCCEE---C
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCC--------------CcCHhHhhCCCCCCEEECCC--CcCCCc---C
Confidence 678888888999988765 78999999998752 12223566677777777766 222111 0
Q ss_pred cCCCccccceEEEEEcCCCccccccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCC--cCCCC
Q 044279 109 SSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK--WIRCA 186 (305)
Q Consensus 109 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~--~~~~~ 186 (305)
.. . + ..+++|+.|++++|.++.++...+ ..+++|+.|+|++| .++.++ .+..+
T Consensus 73 ~~-~----~--------------~~l~~L~~L~Ls~N~l~~l~~~~f-----~~l~~L~~L~L~~N-~l~~~~~~~~~~l 127 (220)
T 2v9t_B 73 PD-A----F--------------QGLRSLNSLVLYGNKITELPKSLF-----EGLFSLQLLLLNAN-KINCLRVDAFQDL 127 (220)
T ss_dssp TT-T----T--------------TTCSSCCEEECCSSCCCCCCTTTT-----TTCTTCCEEECCSS-CCCCCCTTTTTTC
T ss_pred HH-H----h--------------hCCcCCCEEECCCCcCCccCHhHc-----cCCCCCCEEECCCC-CCCEeCHHHcCCC
Confidence 00 0 0 346777788887777777765542 56777888888887 555552 46677
Q ss_pred CCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcc
Q 044279 187 PNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLP 234 (305)
Q Consensus 187 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 234 (305)
++|++|++++|. +..+++ ..+..+++|+.|++++++
T Consensus 128 ~~L~~L~L~~N~-l~~~~~-----------~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 128 HNLNLLSLYDNK-LQTIAK-----------GTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TTCCEEECCSSC-CSCCCT-----------TTTTTCTTCCEEECCSSC
T ss_pred CCCCEEECCCCc-CCEECH-----------HHHhCCCCCCEEEeCCCC
Confidence 778888887755 333333 245567777777777763
No 119
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.33 E-value=8.2e-12 Score=102.10 Aligned_cols=149 Identities=14% Similarity=0.151 Sum_probs=88.1
Q ss_pred cccccccCCccccCCcccccccccceeeccccceeeceEEEeeccccccccccccccCccCccceeEEEeecCccccccc
Q 044279 28 LCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRF 107 (305)
Q Consensus 28 L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l 107 (305)
-+.++++++.+..+|..+. ..+++|++++|.+.. ......+..+++|+.|++++ +....+.
T Consensus 13 ~~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~-------------~~~~~~~~~l~~L~~L~L~~--N~i~~i~-- 73 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTV-------------LEATGIFKKLPQLRKINFSN--NKITDIE-- 73 (220)
T ss_dssp TTEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCE-------------ECCCCCGGGCTTCCEEECCS--SCCCEEC--
T ss_pred CCEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCc-------------cCchhhhccCCCCCEEECCC--CcCCEEC--
Confidence 3588999999999987664 467899999987531 11112355666666666655 2211110
Q ss_pred ccCCCccccceEEEEEcCCCccccccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCC--cCCC
Q 044279 108 QSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK--WIRC 185 (305)
Q Consensus 108 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~--~~~~ 185 (305)
.. . + ..+++|+.|++++|.++.++...+ ..+++|++|+|++| .++.++ .+..
T Consensus 74 -~~-~----~--------------~~l~~L~~L~Ls~N~l~~~~~~~~-----~~l~~L~~L~Ls~N-~l~~~~~~~~~~ 127 (220)
T 2v70_A 74 -EG-A----F--------------EGASGVNEILLTSNRLENVQHKMF-----KGLESLKTLMLRSN-RITCVGNDSFIG 127 (220)
T ss_dssp -TT-T----T--------------TTCTTCCEEECCSSCCCCCCGGGG-----TTCSSCCEEECTTS-CCCCBCTTSSTT
T ss_pred -HH-H----h--------------CCCCCCCEEECCCCccCccCHhHh-----cCCcCCCEEECCCC-cCCeECHhHcCC
Confidence 00 0 0 345667777777776666655432 55677777777776 555442 4556
Q ss_pred CCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCc
Q 044279 186 APNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHL 233 (305)
Q Consensus 186 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 233 (305)
+++|++|++++|. +..+++ ..+..+++|+.|+++++
T Consensus 128 l~~L~~L~L~~N~-l~~~~~-----------~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 128 LSSVRLLSLYDNQ-ITTVAP-----------GAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp CTTCSEEECTTSC-CCCBCT-----------TTTTTCTTCCEEECCSC
T ss_pred CccCCEEECCCCc-CCEECH-----------HHhcCCCCCCEEEecCc
Confidence 6777777777754 333322 24556667777777666
No 120
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.31 E-value=2e-12 Score=113.74 Aligned_cols=155 Identities=19% Similarity=0.168 Sum_probs=99.5
Q ss_pred CcccEEeCCCCCCccccchh-hh-cccccccccccCCccccCCc-ccccccccceeeccccceeeceEEEeecccccccc
Q 044279 2 HALAVLDLSYNFDLVELPEA-IG-KLINLCHLNLSNTKIRELPA-GIKYLKNLKILRLDVFSWFSTELVALHHNFCCATT 78 (305)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp~~-~~-~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~ 78 (305)
+.+++|++++| .++.++.. +. ++.+|++|++++|++..++. .+..+++|++|++++|.+. ..
T Consensus 39 ~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~--------------~~ 103 (361)
T 2xot_A 39 SYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH--------------TL 103 (361)
T ss_dssp TTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC--------------EE
T ss_pred CCCCEEECCCC-CCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCC--------------cC
Confidence 45899999999 88888765 55 89999999999999998775 4899999999999999853 22
Q ss_pred ccccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCccccccCCCccEEEEeceecceecccccCCC
Q 044279 79 VLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQG 158 (305)
Q Consensus 79 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~ 158 (305)
....+..+++|+.|++++ +....+.. ... ..+++|+.|++++|.++.++...+..
T Consensus 104 ~~~~~~~l~~L~~L~L~~--N~i~~~~~--~~~--------------------~~l~~L~~L~L~~N~l~~l~~~~~~~- 158 (361)
T 2xot_A 104 DEFLFSDLQALEVLLLYN--NHIVVVDR--NAF--------------------EDMAQLQKLYLSQNQISRFPVELIKD- 158 (361)
T ss_dssp CTTTTTTCTTCCEEECCS--SCCCEECT--TTT--------------------TTCTTCCEEECCSSCCCSCCGGGTC--
T ss_pred CHHHhCCCcCCCEEECCC--CcccEECH--HHh--------------------CCcccCCEEECCCCcCCeeCHHHhcC-
Confidence 334578889999999988 33322210 000 23455666666665555555433100
Q ss_pred cccCCCccceEeeeCCCCCccCC--cCCCCCC--CCEEEEeccc
Q 044279 159 RTYCFRNLRHLSVKDCHFMTDLK--WIRCAPN--LQFLYVSDCQ 198 (305)
Q Consensus 159 ~~~~~~~L~~L~L~~~~~l~~~~--~~~~~~~--L~~L~l~~~~ 198 (305)
...+++|+.|+|++| .++.++ .+..++. ++.|++++|.
T Consensus 159 -~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 159 -GNKLPKLMLLDLSSN-KLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp ----CTTCCEEECCSS-CCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred -cccCCcCCEEECCCC-CCCccCHHHhhhccHhhcceEEecCCC
Confidence 023556666666665 444443 2333443 3556666544
No 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.28 E-value=1.3e-12 Score=100.06 Aligned_cols=124 Identities=16% Similarity=0.220 Sum_probs=69.5
Q ss_pred ccccccccccCCccc--cCCcccccccccceeeccccceeeceEEEeeccccccccccccccCccCccceeEEEeecCcc
Q 044279 25 LINLCHLNLSNTKIR--ELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTH 102 (305)
Q Consensus 25 l~~L~~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 102 (305)
.++|+.|++++|.+. .+|..++.+++|++|++++|.+. .. ..+..+++|+.|++++ +...
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~---------------~~-~~~~~l~~L~~L~Ls~--n~i~ 77 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT---------------SI-ANLPKLNKLKKLELSD--NRVS 77 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCC---------------CC-TTCCCCTTCCEEECCS--SCCC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCC---------------Cc-hhhhcCCCCCEEECCC--Cccc
Confidence 356666666666665 56655666666666666666532 11 5556666666666655 2211
Q ss_pred c-ccccccCCCccccceEEEEEcCCCccccccCCCccEEEEeceecceecc-cccCCCcccCCCccceEeeeCCCCCccC
Q 044279 103 A-FCRFQSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINI-YFGDQGRTYCFRNLRHLSVKDCHFMTDL 180 (305)
Q Consensus 103 ~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~~~~~~L~~L~L~~~~~l~~~ 180 (305)
. ++... ..+++|+.|++++|.+++++. .. ...+++|++|++++| .++.+
T Consensus 78 ~~~~~~~-----------------------~~l~~L~~L~ls~N~i~~~~~~~~-----~~~l~~L~~L~l~~N-~l~~~ 128 (149)
T 2je0_A 78 GGLEVLA-----------------------EKCPNLTHLNLSGNKIKDLSTIEP-----LKKLENLKSLDLFNC-EVTNL 128 (149)
T ss_dssp SCTHHHH-----------------------HHCTTCCEEECTTSCCCSHHHHGG-----GGGCTTCCEEECTTC-GGGGS
T ss_pred chHHHHh-----------------------hhCCCCCEEECCCCcCCChHHHHH-----HhhCCCCCEEeCcCC-cccch
Confidence 1 11100 235566666666666555431 11 255677777777777 55554
Q ss_pred Cc-----CCCCCCCCEEEEe
Q 044279 181 KW-----IRCAPNLQFLYVS 195 (305)
Q Consensus 181 ~~-----~~~~~~L~~L~l~ 195 (305)
+. +..+++|++|+++
T Consensus 129 ~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 129 NDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTHHHHHHHHCTTCCEETTB
T ss_pred HHHHHHHHHHCCCcccccCC
Confidence 32 4556777777654
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.27 E-value=1.3e-11 Score=96.40 Aligned_cols=141 Identities=16% Similarity=0.100 Sum_probs=95.4
Q ss_pred cccccceeeccccceeeceEEEeeccccccccccccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCC
Q 044279 47 YLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPW 126 (305)
Q Consensus 47 ~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 126 (305)
..++|++|++++|.+. ...++..+..+++|+.|++++ +....+ ...
T Consensus 22 ~~~~L~~L~l~~n~l~-------------~~~i~~~~~~l~~L~~L~l~~--n~l~~~---~~~---------------- 67 (168)
T 2ell_A 22 TPAAVRELVLDNCKSN-------------DGKIEGLTAEFVNLEFLSLIN--VGLISV---SNL---------------- 67 (168)
T ss_dssp CTTSCSEEECCSCBCB-------------TTBCSSCCGGGGGCCEEEEES--SCCCCC---SSC----------------
T ss_pred CcccCCEEECCCCCCC-------------hhhHHHHHHhCCCCCEEeCcC--CCCCCh---hhh----------------
Confidence 3478999999998752 135566678888888888887 322222 110
Q ss_pred CccccccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCC---cCCCCCCCCEEEEecccccccc
Q 044279 127 FSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK---WIRCAPNLQFLYVSDCQVLSEI 203 (305)
Q Consensus 127 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~---~~~~~~~L~~L~l~~~~~~~~~ 203 (305)
..+++|+.|++++|.++...... ...+++|++|++++| .+++++ .+..+++|+.|++++|... .+
T Consensus 68 -----~~l~~L~~L~Ls~N~l~~~~~~~-----~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~-~~ 135 (168)
T 2ell_A 68 -----PKLPKLKKLELSENRIFGGLDML-----AEKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCEVT-NL 135 (168)
T ss_dssp -----CCCSSCCEEEEESCCCCSCCCHH-----HHHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGG-TS
T ss_pred -----ccCCCCCEEECcCCcCchHHHHH-----HhhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCc-ch
Confidence 34778888898888876633222 256889999999998 666653 5678899999999997643 22
Q ss_pred ccccCCCCCccccccccccCccceeeccCcccCceecCC
Q 044279 204 IGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICCR 242 (305)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 242 (305)
+... ...+..+++|++|++++| .+.+++..
T Consensus 136 ~~~~--------~~~~~~l~~L~~L~l~~n-~~~~~~~~ 165 (168)
T 2ell_A 136 NDYR--------ESVFKLLPQLTYLDGYDR-EDQEAPDS 165 (168)
T ss_dssp TTHH--------HHHHTTCSSCCEETTEET-TSCBCCSS
T ss_pred HHHH--------HHHHHhCccCcEecCCCC-Chhhcccc
Confidence 2100 014667899999999998 56666543
No 123
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.22 E-value=9.6e-12 Score=97.98 Aligned_cols=132 Identities=14% Similarity=0.134 Sum_probs=85.6
Q ss_pred hhcccccccccccCCccccCCccccccc-ccceeeccccceeeceEEEeeccccccccccccccCccCccceeEEEeecC
Q 044279 22 IGKLINLCHLNLSNTKIRELPAGIKYLK-NLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVD 100 (305)
Q Consensus 22 ~~~l~~L~~L~l~~~~l~~lp~~~~~l~-~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 100 (305)
+.++.+|+.|++++|++..+|. +..+. +|++|++++|.+. .+ ..+..+++|+.|++++ +.
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~---------------~~-~~l~~l~~L~~L~Ls~--N~ 75 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIR---------------KL-DGFPLLRRLKTLLVNN--NR 75 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCC---------------EE-CCCCCCSSCCEEECCS--SC
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCC---------------cc-cccccCCCCCEEECCC--Cc
Confidence 4566777888888877777753 44444 7888888887642 22 5677777788777776 32
Q ss_pred cccccccccCCCccccceEEEEEcCCCccccccCCCccEEEEeceecceecc-cccCCCcccCCCccceEeeeCCCCCcc
Q 044279 101 THAFCRFQSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINI-YFGDQGRTYCFRNLRHLSVKDCHFMTD 179 (305)
Q Consensus 101 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~~~~~~L~~L~L~~~~~l~~ 179 (305)
...++. . +...+++|+.|++++|.+++++. .. ...+++|+.|++++| .++.
T Consensus 76 l~~~~~---~-------------------~~~~l~~L~~L~L~~N~i~~~~~~~~-----l~~l~~L~~L~l~~N-~i~~ 127 (176)
T 1a9n_A 76 ICRIGE---G-------------------LDQALPDLTELILTNNSLVELGDLDP-----LASLKSLTYLCILRN-PVTN 127 (176)
T ss_dssp CCEECS---C-------------------HHHHCTTCCEEECCSCCCCCGGGGGG-----GGGCTTCCEEECCSS-GGGG
T ss_pred ccccCc---c-------------------hhhcCCCCCEEECCCCcCCcchhhHh-----hhcCCCCCEEEecCC-CCCC
Confidence 221110 0 00346778888888887766664 12 256788888888888 5555
Q ss_pred CCc-----CCCCCCCCEEEEeccccc
Q 044279 180 LKW-----IRCAPNLQFLYVSDCQVL 200 (305)
Q Consensus 180 ~~~-----~~~~~~L~~L~l~~~~~~ 200 (305)
++. +..+++|+.|++++|..-
T Consensus 128 ~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 128 KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 543 567888888888887643
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.21 E-value=5.1e-11 Score=95.34 Aligned_cols=54 Identities=22% Similarity=0.319 Sum_probs=32.3
Q ss_pred cEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccce
Q 044279 5 AVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSW 61 (305)
Q Consensus 5 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~ 61 (305)
++++++++ .++.+|..+. .+|++|++++|++..+|..+..+++|++|++++|.+
T Consensus 13 ~~l~~~~~-~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i 66 (193)
T 2wfh_A 13 TVVRCSNK-GLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRI 66 (193)
T ss_dssp TEEECTTS-CCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCC
T ss_pred CEEEcCCC-CCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcC
Confidence 35566666 5566665432 456666666666666665566666666666666653
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.21 E-value=4.9e-11 Score=95.34 Aligned_cols=54 Identities=20% Similarity=0.265 Sum_probs=34.0
Q ss_pred cEEeCCCCCCccccchhhhcccccccccccCCccccCCcc--cccccccceeeccccce
Q 044279 5 AVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAG--IKYLKNLKILRLDVFSW 61 (305)
Q Consensus 5 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~--~~~l~~L~~L~l~~~~~ 61 (305)
++++++++ .++++|..+.. +|++|++++|++..++.. ++.+++|++|++++|.+
T Consensus 11 ~~l~~s~~-~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l 66 (192)
T 1w8a_A 11 TTVDCTGR-GLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQL 66 (192)
T ss_dssp TEEECTTS-CCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCC
T ss_pred CEEEcCCC-CcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCC
Confidence 45666666 66666654433 666777777766665543 66666777777766653
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.20 E-value=1.2e-11 Score=94.55 Aligned_cols=58 Identities=24% Similarity=0.396 Sum_probs=26.5
Q ss_pred CCCccEEEEeceecce-ecccccCCCcccCCCccceEeeeCCCCCccC---CcCCCCCCCCEEEEeccc
Q 044279 134 MDHLETLEIVDCSLES-INIYFGDQGRTYCFRNLRHLSVKDCHFMTDL---KWIRCAPNLQFLYVSDCQ 198 (305)
Q Consensus 134 ~~~L~~L~l~~~~l~~-~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~---~~~~~~~~L~~L~l~~~~ 198 (305)
+++|+.|++++|.+++ ++..+ ..+++|++|++++| .++++ ..+..+++|++|++++|.
T Consensus 63 l~~L~~L~Ls~n~i~~~~~~~~------~~l~~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~ 124 (149)
T 2je0_A 63 LNKLKKLELSDNRVSGGLEVLA------EKCPNLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCE 124 (149)
T ss_dssp CTTCCEEECCSSCCCSCTHHHH------HHCTTCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTCG
T ss_pred CCCCCEEECCCCcccchHHHHh------hhCCCCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCCc
Confidence 4445555555555443 22111 23455555555555 33332 234445555555555543
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.14 E-value=2.7e-10 Score=91.08 Aligned_cols=120 Identities=13% Similarity=0.087 Sum_probs=84.3
Q ss_pred EEEEcCCCcccc-ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCC--cCCCCCCCCEEEEec
Q 044279 120 LTVASPWFSSLD-FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK--WIRCAPNLQFLYVSD 196 (305)
Q Consensus 120 L~l~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~ 196 (305)
++++.+.++.++ .-.++|+.|++++|.++.++..+ ..+++|+.|++++| .++.++ .+..+++|++|++++
T Consensus 15 l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~~ip~~~------~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 15 VRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKEL------SNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp EECTTSCCSSCCSCCCTTCCEEECCSSCCCSCCGGG------GGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred EEcCCCCCCcCCCCCCCCCCEEECCCCcCchhHHHh------hcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCC
Confidence 333344555555 33467888888888877776433 67888888888888 666654 467788888888888
Q ss_pred cccccccccccCCCCCccccccccccCccceeeccCcccCceecCC-CCCCCCCceEEeeCCCC
Q 044279 197 CQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICCR-AVPLPSLKTISVYDCPG 259 (305)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~c~~ 259 (305)
|. +..+++ ..+..+++|++|+++++ .++.++.. ...+++|+.|++++++.
T Consensus 88 N~-l~~i~~-----------~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 88 NR-LRCIPP-----------RTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp SC-CCBCCT-----------TTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred Cc-cCEeCH-----------HHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCCe
Confidence 65 444443 25667888888888888 67777654 44688888888877753
No 128
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.13 E-value=3.4e-10 Score=89.09 Aligned_cols=124 Identities=19% Similarity=0.133 Sum_probs=92.2
Q ss_pred eEEEEEcCCCcccc-ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCC--cCCCCCCCCEEEE
Q 044279 118 KRLTVASPWFSSLD-FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK--WIRCAPNLQFLYV 194 (305)
Q Consensus 118 ~~L~l~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l 194 (305)
+.++++.+.+..++ ...++|+.|++++|.++.++.... ..+++|++|++++| .++.++ .+..+++|++|++
T Consensus 10 ~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVF-----DKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp TEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTT-----TTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred CEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHh-----cCcccccEEECCCC-cceEeChhHccCCCccCEEEC
Confidence 34444445555555 445789999999988877775542 67899999999998 677765 3678899999999
Q ss_pred eccccccccccccCCCCCccccccccccCccceeeccCcccCceecCCC-CCCCCCceEEeeCCCCC
Q 044279 195 SDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICCRA-VPLPSLKTISVYDCPGL 260 (305)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~l~~c~~l 260 (305)
++|. +..+++ ..+..+++|++|+++++ .++.++... ..+++|+.|++++++..
T Consensus 84 ~~N~-l~~~~~-----------~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 84 HENK-LQSLPN-----------GVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CSSC-CCCCCT-----------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCC-ccccCH-----------HHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCee
Confidence 9965 444443 24578899999999998 777777654 56899999999888543
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.12 E-value=5.8e-11 Score=93.47 Aligned_cols=134 Identities=13% Similarity=0.093 Sum_probs=83.3
Q ss_pred ccccccccceeeccccceeeceEEEeeccccccccccccccCcc-CccceeEEEeecCcccccccccCCCccccceEEEE
Q 044279 44 GIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLE-NIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTV 122 (305)
Q Consensus 44 ~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l 122 (305)
.+..+.+|++|++++|.+. .+ +.+..+. +|+.|++++ +....+ ...
T Consensus 14 ~~~~~~~L~~L~l~~n~l~---------------~i-~~~~~~~~~L~~L~Ls~--N~l~~~---~~l------------ 60 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP---------------VI-ENLGATLDQFDAIDFSD--NEIRKL---DGF------------ 60 (176)
T ss_dssp EEECTTSCEEEECTTSCCC---------------SC-CCGGGGTTCCSEEECCS--SCCCEE---CCC------------
T ss_pred hcCCcCCceEEEeeCCCCc---------------hh-HHhhhcCCCCCEEECCC--CCCCcc---ccc------------
Confidence 3566778888888888642 22 3344444 677777766 222221 110
Q ss_pred EcCCCccccccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCC---cCCCCCCCCEEEEecccc
Q 044279 123 ASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK---WIRCAPNLQFLYVSDCQV 199 (305)
Q Consensus 123 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~---~~~~~~~L~~L~l~~~~~ 199 (305)
..+++|+.|++++|.++.++.... ..+++|+.|++++| .+++++ .+..+++|+.|++++|..
T Consensus 61 ---------~~l~~L~~L~Ls~N~l~~~~~~~~-----~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~i 125 (176)
T 1a9n_A 61 ---------PLLRRLKTLLVNNNRICRIGEGLD-----QALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNPV 125 (176)
T ss_dssp ---------CCCSSCCEEECCSSCCCEECSCHH-----HHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSGG
T ss_pred ---------ccCCCCCEEECCCCcccccCcchh-----hcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCCC
Confidence 346778888888887777764442 56788888888888 666654 356778888888888664
Q ss_pred ccccccccCCCCCccccccccccCccceeeccCcc
Q 044279 200 LSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLP 234 (305)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 234 (305)
..++... ...+..+++|+.|+++++.
T Consensus 126 -~~~~~~~--------~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 126 -TNKKHYR--------LYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp -GGSTTHH--------HHHHHHCTTCSEETTEECC
T ss_pred -CCcHhHH--------HHHHHHCCccceeCCCcCC
Confidence 3333200 0125677888888888773
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.11 E-value=2.1e-11 Score=116.75 Aligned_cols=111 Identities=19% Similarity=0.100 Sum_probs=57.7
Q ss_pred chhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeeccccccccccccccCccCccceeEEEee
Q 044279 19 PEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCF 98 (305)
Q Consensus 19 p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 98 (305)
|..+..+.+|+.|++++|.+..+|..+..+++|++|++++|.+ ..++..+..+++|+.|++++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l---------------~~lp~~~~~l~~L~~L~Ls~-- 279 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSL---------------TELPAEIKNLSNLRVLDLSH-- 279 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCC---------------SCCCGGGGGGTTCCEEECTT--
T ss_pred hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcC---------------cccChhhhCCCCCCEEeCcC--
Confidence 3445666666666666666666666666666666666666653 24555566666666666666
Q ss_pred cCcccccccccCCCccccceEEEEEcCCCcccc---ccCCCccEEEEeceecce
Q 044279 99 VDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD---FRMDHLETLEIVDCSLES 149 (305)
Q Consensus 99 ~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~L~~L~l~~~~l~~ 149 (305)
+....++. ...-..+|+.|+|+.|.++.++ ..+++|+.|++++|.++.
T Consensus 280 N~l~~lp~---~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 280 NRLTSLPA---ELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp SCCSSCCS---SGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred CcCCccCh---hhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCC
Confidence 22222211 1111122555555544444444 445566666666666443
No 131
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.09 E-value=4.6e-10 Score=97.32 Aligned_cols=99 Identities=15% Similarity=0.046 Sum_probs=74.6
Q ss_pred CCCccceEeeeCCCCCccCC--cCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccc-eeeccCcccCce
Q 044279 162 CFRNLRHLSVKDCHFMTDLK--WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLM-VIDLQHLPSLTS 238 (305)
Q Consensus 162 ~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~ 238 (305)
.+++|+.|+|.+| .++.++ .|..|++|+++++.++ ++.++. ..+.++++|+ .+++.+ .++.
T Consensus 224 ~~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~-----------~aF~~~~~L~~~l~l~~--~l~~ 287 (329)
T 3sb4_A 224 YMPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPHN--LKTIGQ-----------RVFSNCGRLAGTLELPA--SVTA 287 (329)
T ss_dssp HCTTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCTT--CCEECT-----------TTTTTCTTCCEEEEECT--TCCE
T ss_pred hcCCCeEEECCCC-CcceecHhhhhCCCCCCEEECCcc--cceehH-----------HHhhCChhccEEEEEcc--cceE
Confidence 3789999999988 677765 5788999999999985 666665 3677899999 999988 6778
Q ss_pred ecCC-CCCCCCCceEEeeCCCCCCCCCCCCccccCcCceE
Q 044279 239 ICCR-AVPLPSLKTISVYDCPGLRKLPLNSGSAKNSLNAI 277 (305)
Q Consensus 239 ~~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~i 277 (305)
++.. ...+++|+.+.+.+. .++.++.+.-.-+..++.+
T Consensus 288 I~~~aF~~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 288 IEFGAFMGCDNLRYVLATGD-KITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp ECTTTTTTCTTEEEEEECSS-CCCEECTTTTCTTCCCCEE
T ss_pred EchhhhhCCccCCEEEeCCC-ccCccchhhhcCCcchhhh
Confidence 7654 447899999998544 6777766544433444433
No 132
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.08 E-value=3.8e-11 Score=114.93 Aligned_cols=152 Identities=14% Similarity=0.076 Sum_probs=74.9
Q ss_pred cccEEeCCCCCCccccchhhhcccccccccc-----cCCccccCCcccccccccceeeccccceeeceEEEeeccccccc
Q 044279 3 ALAVLDLSYNFDLVELPEAIGKLINLCHLNL-----SNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCAT 77 (305)
Q Consensus 3 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l-----~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~ 77 (305)
.++.|++.++ .+...+..+....+|..+.+ +.+.+...|..+..+++|++|++++|.+ .
T Consensus 174 ~~~~l~L~~n-~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l---------------~ 237 (727)
T 4b8c_D 174 LTPKIELFAN-GKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQI---------------F 237 (727)
T ss_dssp -------------------------------------------------CCCCCCEEECTTSCC---------------S
T ss_pred ccceEEeeCC-CCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCC---------------C
Confidence 3556677666 55555544333333433332 2233344455577788888888888773 3
Q ss_pred cccccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCccccccCCCccEEEEeceecceecccccCC
Q 044279 78 TVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQ 157 (305)
Q Consensus 78 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~ 157 (305)
.++..+..+++|+.|++++ +....++.. + ..+++|+.|++++|.++.+|..+
T Consensus 238 ~l~~~~~~l~~L~~L~Ls~--N~l~~lp~~---------~--------------~~l~~L~~L~Ls~N~l~~lp~~~--- 289 (727)
T 4b8c_D 238 NISANIFKYDFLTRLYLNG--NSLTELPAE---------I--------------KNLSNLRVLDLSHNRLTSLPAEL--- 289 (727)
T ss_dssp CCCGGGGGCCSCSCCBCTT--SCCSCCCGG---------G--------------GGGTTCCEEECTTSCCSSCCSSG---
T ss_pred CCChhhcCCCCCCEEEeeC--CcCcccChh---------h--------------hCCCCCCEEeCcCCcCCccChhh---
Confidence 5555666777777777766 322221110 0 45778888888888877776554
Q ss_pred CcccCCCccceEeeeCCCCCccCC-cCCCCCCCCEEEEeccccccc
Q 044279 158 GRTYCFRNLRHLSVKDCHFMTDLK-WIRCAPNLQFLYVSDCQVLSE 202 (305)
Q Consensus 158 ~~~~~~~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~l~~~~~~~~ 202 (305)
..+++|++|+|++| .++.+| .+..+++|+.|+|++|.....
T Consensus 290 ---~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 290 ---GSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp ---GGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCCCSH
T ss_pred ---cCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCccCCC
Confidence 56788888888888 666665 577788888888888765433
No 133
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.08 E-value=6.3e-10 Score=88.81 Aligned_cols=125 Identities=17% Similarity=0.087 Sum_probs=87.3
Q ss_pred eEEEEEcCCCcccc-ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccC-C-cCCCCCCCCEEEE
Q 044279 118 KRLTVASPWFSSLD-FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDL-K-WIRCAPNLQFLYV 194 (305)
Q Consensus 118 ~~L~l~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~-~-~~~~~~~L~~L~l 194 (305)
+.++++.+.++.++ .-..+|+.|++++|.++.++.... +..+++|++|+|++| .++.+ + .+..+++|++|++
T Consensus 11 ~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~----~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGL----FGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCS----GGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccc----cccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEEC
Confidence 44555555566666 233478888888888777765311 267888999999888 66665 2 5777888999999
Q ss_pred eccccccccccccCCCCCccccccccccCccceeeccCcccCcee-cCCCCCCCCCceEEeeCCCCC
Q 044279 195 SDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSI-CCRAVPLPSLKTISVYDCPGL 260 (305)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~c~~l 260 (305)
++|. +..+++ ..+..+++|++|+++++ .++.+ +.....+++|+.|++++++.-
T Consensus 86 s~N~-l~~~~~-----------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 86 GENK-IKEISN-----------KMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CSCC-CCEECS-----------SSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCCc-CCccCH-----------HHhcCCCCCCEEECCCC-cCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 8865 444443 24667888999999988 66655 445567888999999877543
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.06 E-value=4.7e-12 Score=101.78 Aligned_cols=72 Identities=17% Similarity=0.137 Sum_probs=49.0
Q ss_pred cceEEEEEcCCCcccc--ccCCCccEEEEeceecceecc-cccCCCcccCCCccceEeeeCCCCCccC-Cc---------
Q 044279 116 CVKRLTVASPWFSSLD--FRMDHLETLEIVDCSLESINI-YFGDQGRTYCFRNLRHLSVKDCHFMTDL-KW--------- 182 (305)
Q Consensus 116 ~L~~L~l~~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~~~~~~L~~L~L~~~~~l~~~-~~--------- 182 (305)
+|+.|+++.|.++.++ ..+++|+.|++++|.+++++. .. ...+++|++|++++| .++.. +.
T Consensus 94 ~L~~L~L~~N~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~-----l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~ 167 (198)
T 1ds9_A 94 TLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDK-----LAALDKLEDLLLAGN-PLYNDYKENNATSEYRI 167 (198)
T ss_dssp HCSEEEEEEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHH-----HTTTTTCSEEEECSC-HHHHHHHTTTTHHHHHH
T ss_pred cCCEEECcCCcCCcCCccccCCCCCEEECCCCcCCchhHHHH-----HhcCCCCCEEEecCC-ccccccccccchHHHHH
Confidence 3555555544444444 567889999999998877654 22 267899999999998 44332 22
Q ss_pred --CCCCCCCCEEE
Q 044279 183 --IRCAPNLQFLY 193 (305)
Q Consensus 183 --~~~~~~L~~L~ 193 (305)
+..+++|+.|+
T Consensus 168 ~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 168 EVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHCSSCSEEC
T ss_pred HHHHhCCCcEEEC
Confidence 56789999887
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.04 E-value=7.6e-10 Score=87.01 Aligned_cols=61 Identities=13% Similarity=0.088 Sum_probs=39.6
Q ss_pred CCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCCc--CCCCCCCCEEEEeccccc
Q 044279 134 MDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLKW--IRCAPNLQFLYVSDCQVL 200 (305)
Q Consensus 134 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~--~~~~~~L~~L~l~~~~~~ 200 (305)
+++|+.|++++|.++.++.... ..+++|++|++++| .++.++. +..+++|++|++++|...
T Consensus 75 l~~L~~L~l~~N~l~~~~~~~~-----~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 75 LTKLTILYLHENKLQSLPNGVF-----DKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CTTCCEEECCSSCCCCCCTTTT-----TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCccCEEECCCCCccccCHHHh-----hCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCee
Confidence 5566666666666666554432 55677777777777 5555542 456777888888776643
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.99 E-value=1.8e-11 Score=98.30 Aligned_cols=158 Identities=20% Similarity=0.166 Sum_probs=105.7
Q ss_pred hhcccccccccccCCccc-cCC------cccccccccceeeccccceeeceEEEeeccccccccccccccCccCccceeE
Q 044279 22 IGKLINLCHLNLSNTKIR-ELP------AGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISI 94 (305)
Q Consensus 22 ~~~l~~L~~L~l~~~~l~-~lp------~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l 94 (305)
+.....++.++++.+.+. .+| ..++.+++|++|++++|.+. .++ .+..+++|+.|++
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~---------------~l~-~~~~l~~L~~L~l 77 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE---------------KIS-SLSGMENLRILSL 77 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEES---------------CCC-CHHHHTTCCEEEE
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCc---------------ccc-ccccCCCCCEEEC
Confidence 455567777777666554 333 37888999999999988742 233 7778888888888
Q ss_pred EEeecCcccccccccCCCccccceEEEEEcCCCccccccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCC
Q 044279 95 TLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDC 174 (305)
Q Consensus 95 ~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~ 174 (305)
++|. ...++. ....+++|+.|++++|.++.++ .+ ..+++|+.|++++|
T Consensus 78 ~~n~--l~~l~~-----------------------~~~~~~~L~~L~L~~N~l~~l~-~~------~~l~~L~~L~l~~N 125 (198)
T 1ds9_A 78 GRNL--IKKIEN-----------------------LDAVADTLEELWISYNQIASLS-GI------EKLVNLRVLYMSNN 125 (198)
T ss_dssp EEEE--ECSCSS-----------------------HHHHHHHCSEEEEEEEECCCHH-HH------HHHHHSSEEEESEE
T ss_pred CCCC--cccccc-----------------------hhhcCCcCCEEECcCCcCCcCC-cc------ccCCCCCEEECCCC
Confidence 8732 111111 0034688999999999988776 22 67899999999999
Q ss_pred CCCccCC---cCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeec
Q 044279 175 HFMTDLK---WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDL 230 (305)
Q Consensus 175 ~~l~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 230 (305)
.++.++ .+..+++|++|++++|......+.... ........+..+++|+.|+-
T Consensus 126 -~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~--~~~~~~~~~~~l~~L~~Ld~ 181 (198)
T 1ds9_A 126 -KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNA--TSEYRIEVVKRLPNLKKLDG 181 (198)
T ss_dssp -ECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTT--HHHHHHHHHHHCSSCSEECC
T ss_pred -cCCchhHHHHHhcCCCCCEEEecCCccccccccccc--hHHHHHHHHHhCCCcEEECC
Confidence 676653 477899999999999875333221000 00000123678999999873
No 137
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.97 E-value=2.9e-08 Score=88.34 Aligned_cols=213 Identities=14% Similarity=0.137 Sum_probs=133.4
Q ss_pred cccEEeCCCCCCccccchh-hhcccccccccccCCccccCCcc-cccccccceeeccccceeeceEEEeecccccccccc
Q 044279 3 ALAVLDLSYNFDLVELPEA-IGKLINLCHLNLSNTKIRELPAG-IKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVL 80 (305)
Q Consensus 3 ~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~ 80 (305)
+|+.+.+..+ ++.++.. +.+ .+|+.+.+.. .+..++.. |.+|.+|+.+++..+.+ ..+.
T Consensus 136 ~L~~i~l~~~--i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l---------------~~I~ 196 (401)
T 4fdw_A 136 QIAKVVLNEG--LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKI---------------TKLP 196 (401)
T ss_dssp CCSEEECCTT--CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCC---------------SEEC
T ss_pred CccEEEeCCC--ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcc---------------eEec
Confidence 4667777664 6666543 555 4688888865 56666544 77888899998887763 2333
Q ss_pred ccccCccCccceeEEEeecCcccccccccC-CCccccceEEEEEcCCCcccc---ccCCCccEEEEeceecceecccccC
Q 044279 81 AGLESLENIHDISITLCFVDTHAFCRFQSS-PKLQSCVKRLTVASPWFSSLD---FRMDHLETLEIVDCSLESINIYFGD 156 (305)
Q Consensus 81 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~---~~~~~L~~L~l~~~~l~~~~~~~~~ 156 (305)
.....+.+|+.+.+.. . +..+... -..+.+|+.+.+.. .+..+. ....+|+.+.+.. .++.++...
T Consensus 197 ~~aF~~~~L~~l~lp~--~----l~~I~~~aF~~~~~L~~l~l~~-~l~~I~~~aF~~~~L~~i~lp~-~i~~I~~~a-- 266 (401)
T 4fdw_A 197 ASTFVYAGIEEVLLPV--T----LKEIGSQAFLKTSQLKTIEIPE-NVSTIGQEAFRESGITTVKLPN-GVTNIASRA-- 266 (401)
T ss_dssp TTTTTTCCCSEEECCT--T----CCEECTTTTTTCTTCCCEECCT-TCCEECTTTTTTCCCSEEEEET-TCCEECTTT--
T ss_pred hhhEeecccCEEEeCC--c----hheehhhHhhCCCCCCEEecCC-CccCccccccccCCccEEEeCC-CccEEChhH--
Confidence 3333356777776643 1 1111111 11123477777752 233333 2226789999843 377777655
Q ss_pred CCcccCCCccceEeeeCCCCCc-----cC--CcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceee
Q 044279 157 QGRTYCFRNLRHLSVKDCHFMT-----DL--KWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVID 229 (305)
Q Consensus 157 ~~~~~~~~~L~~L~L~~~~~l~-----~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 229 (305)
+..+++|+.+++.++ ... .+ ..|..|++|+.+.+.+ .++.+.. ..+.++++|+.+.
T Consensus 267 ---F~~c~~L~~l~l~~~-~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~-----------~aF~~c~~L~~l~ 329 (401)
T 4fdw_A 267 ---FYYCPELAEVTTYGS-TFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQ-----------GLLGGNRKVTQLT 329 (401)
T ss_dssp ---TTTCTTCCEEEEESS-CCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECT-----------TTTTTCCSCCEEE
T ss_pred ---hhCCCCCCEEEeCCc-cccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhh-----------hhhcCCCCccEEE
Confidence 378899999999876 332 23 2577889999999885 2555554 3566889999999
Q ss_pred ccCcccCceecCCCC-CCCCCceEEeeCCCCCCCCCC
Q 044279 230 LQHLPSLTSICCRAV-PLPSLKTISVYDCPGLRKLPL 265 (305)
Q Consensus 230 l~~~~~l~~~~~~~~-~~~~L~~L~l~~c~~l~~~~~ 265 (305)
|.. +++.+..... .+ +|+.+.+.++ .+..++.
T Consensus 330 lp~--~l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~ 362 (401)
T 4fdw_A 330 IPA--NVTQINFSAFNNT-GIKEVKVEGT-TPPQVFE 362 (401)
T ss_dssp ECT--TCCEECTTSSSSS-CCCEEEECCS-SCCBCCC
T ss_pred ECc--cccEEcHHhCCCC-CCCEEEEcCC-CCccccc
Confidence 954 4677765443 56 8999999766 4444443
No 138
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.79 E-value=3.9e-07 Score=80.98 Aligned_cols=203 Identities=8% Similarity=0.073 Sum_probs=105.9
Q ss_pred ccEEeCCCCCCccccchh-hhcccccccccccCCccccCCcc-cccccccceeeccccceeeceEEEeeccccccccccc
Q 044279 4 LAVLDLSYNFDLVELPEA-IGKLINLCHLNLSNTKIRELPAG-IKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLA 81 (305)
Q Consensus 4 L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~ 81 (305)
++.+.+... ++.++.. +.++ +|+.+.+..+ +..++.. |.+ .+|+.+.+...- ..--..
T Consensus 115 l~~i~ip~~--i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~~l---------------~~I~~~ 174 (401)
T 4fdw_A 115 YNEIILPNS--VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPSTL---------------EQLKED 174 (401)
T ss_dssp CSEEECCTT--CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCTTC---------------CEECSS
T ss_pred ccEEEECCc--cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCCCc---------------cEehHH
Confidence 344444432 4555433 4443 5777776543 4444443 444 357777776521 112224
Q ss_pred cccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc----ccCCCccEEEEeceecceecccccCC
Q 044279 82 GLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD----FRMDHLETLEIVDCSLESINIYFGDQ 157 (305)
Q Consensus 82 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~L~~L~l~~~~l~~~~~~~~~~ 157 (305)
.+..+.+|+.+.+.. +....+.. ..-.+.+|+++.+. +.+..+. ..+++|+.+.+..+ ++.++...+
T Consensus 175 aF~~c~~L~~l~l~~--n~l~~I~~---~aF~~~~L~~l~lp-~~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF-- 245 (401)
T 4fdw_A 175 IFYYCYNLKKADLSK--TKITKLPA---STFVYAGIEEVLLP-VTLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAF-- 245 (401)
T ss_dssp TTTTCTTCCEEECTT--SCCSEECT---TTTTTCCCSEEECC-TTCCEECTTTTTTCTTCCCEECCTT-CCEECTTTT--
T ss_pred HhhCcccCCeeecCC--CcceEech---hhEeecccCEEEeC-CchheehhhHhhCCCCCCEEecCCC-ccCcccccc--
Confidence 566677777776654 22222211 11112346666665 2233333 55667777777653 555654442
Q ss_pred CcccCCCccceEeeeCCCCCccCC--cCCCCCCCCEEEEeccccc----cccccccCCCCCccccccccccCccceeecc
Q 044279 158 GRTYCFRNLRHLSVKDCHFMTDLK--WIRCAPNLQFLYVSDCQVL----SEIIGTYESPGTSEIEESHHFLSNLMVIDLQ 231 (305)
Q Consensus 158 ~~~~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 231 (305)
.. .+|+.+.+..+ ++.++ .|..|++|+.+.+.++... ..++. ..+.++++|+.+.|.
T Consensus 246 ---~~-~~L~~i~lp~~--i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~-----------~aF~~c~~L~~l~l~ 308 (401)
T 4fdw_A 246 ---RE-SGITTVKLPNG--VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHP-----------YCLEGCPKLARFEIP 308 (401)
T ss_dssp ---TT-CCCSEEEEETT--CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECT-----------TTTTTCTTCCEECCC
T ss_pred ---cc-CCccEEEeCCC--ccEEChhHhhCCCCCCEEEeCCccccCCcccEECH-----------HHhhCCccCCeEEeC
Confidence 33 56777777543 44442 4666777777777664321 11222 245567777777776
Q ss_pred CcccCceecCCCC-CCCCCceEEe
Q 044279 232 HLPSLTSICCRAV-PLPSLKTISV 254 (305)
Q Consensus 232 ~~~~l~~~~~~~~-~~~~L~~L~l 254 (305)
. +++.++.... .+++|+.+.+
T Consensus 309 ~--~i~~I~~~aF~~c~~L~~l~l 330 (401)
T 4fdw_A 309 E--SIRILGQGLLGGNRKVTQLTI 330 (401)
T ss_dssp T--TCCEECTTTTTTCCSCCEEEE
T ss_pred C--ceEEEhhhhhcCCCCccEEEE
Confidence 3 4666654433 4677777776
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.78 E-value=2.7e-08 Score=77.94 Aligned_cols=99 Identities=25% Similarity=0.252 Sum_probs=61.8
Q ss_pred cEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCC--cCCCCCCCCEEEEeccccccccccccCCCCCccc
Q 044279 138 ETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK--WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEI 215 (305)
Q Consensus 138 ~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 215 (305)
+.++++++.++++|..+ .++|+.|+|++| .++.++ .+..+++|++|++++|. +..++.
T Consensus 15 ~~l~~~~n~l~~iP~~~--------~~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~---------- 74 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI--------PTDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSNK-LTAIPT---------- 74 (174)
T ss_dssp SEEECCSSCCSSCCSCC--------CTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCT----------
T ss_pred cEEEeCCCCCCccCCCc--------CCCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCCC-CCccCh----------
Confidence 45666666666666322 366777777777 555542 35667777777777754 444443
Q ss_pred cccccccCccceeeccCcccCceecCC-CCCCCCCceEEeeCCC
Q 044279 216 EESHHFLSNLMVIDLQHLPSLTSICCR-AVPLPSLKTISVYDCP 258 (305)
Q Consensus 216 ~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~c~ 258 (305)
..+..+++|++|+++++ .++.++.. ...+++|+.|++++++
T Consensus 75 -~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 75 -GVFDKLTQLTQLDLNDN-HLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp -TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred -hHhCCcchhhEEECCCC-ccceeCHHHhccccCCCEEEeCCCC
Confidence 23456777777777776 66666554 4467777777776663
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.77 E-value=2.8e-08 Score=77.56 Aligned_cols=100 Identities=23% Similarity=0.156 Sum_probs=59.4
Q ss_pred ccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCC--cCCCCCCCCEEEEeccccccccccccCCCCCcc
Q 044279 137 LETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK--WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSE 214 (305)
Q Consensus 137 L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 214 (305)
.+.++++++.++.+|..+ .++|+.|+|++| .++.++ .+..+++|++|++++|. +..+++
T Consensus 11 ~~~l~~s~n~l~~ip~~~--------~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~--------- 71 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI--------PTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPA--------- 71 (170)
T ss_dssp TTEEECTTSCCSSCCSCC--------CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC-CCCCCT---------
T ss_pred CCEEEeCCCCcCccCccC--------CCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCC-cCccCh---------
Confidence 455666666666665322 356677777776 555542 35566777777777654 444443
Q ss_pred ccccccccCccceeeccCcccCceecCC-CCCCCCCceEEeeCCC
Q 044279 215 IEESHHFLSNLMVIDLQHLPSLTSICCR-AVPLPSLKTISVYDCP 258 (305)
Q Consensus 215 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~c~ 258 (305)
..+..+++|++|+|+++ .++.++.. ...+++|+.|++++++
T Consensus 72 --~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 72 --GVFDKLTQLTQLSLNDN-QLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp --TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred --hhccCCCCCCEEECCCC-ccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 23456677777777776 56655543 3456777777776653
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.74 E-value=2.6e-08 Score=77.76 Aligned_cols=100 Identities=18% Similarity=0.096 Sum_probs=71.8
Q ss_pred ceEEEEEcCCCcccc-ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCC--cCCCCCCCCEEE
Q 044279 117 VKRLTVASPWFSSLD-FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK--WIRCAPNLQFLY 193 (305)
Q Consensus 117 L~~L~l~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~ 193 (305)
.+.++++.+.++.++ .-.++|+.|++++|.++.++...+ ..+++|++|+|++| .++.++ .+..+++|++|+
T Consensus 11 ~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~-----~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~ 84 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVF-----DRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLS 84 (170)
T ss_dssp TTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTT-----TTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhh-----cCcccCCEEECCCC-CcCccChhhccCCCCCCEEE
Confidence 445555556666666 335778888888888877765442 67888999999888 677765 356788899999
Q ss_pred EeccccccccccccCCCCCccccccccccCccceeeccCcc
Q 044279 194 VSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLP 234 (305)
Q Consensus 194 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 234 (305)
+++|. +..+++ ..+..+++|++|+|++++
T Consensus 85 L~~N~-l~~~~~-----------~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 85 LNDNQ-LKSIPR-----------GAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CCSSC-CCCCCT-----------TTTTTCTTCCEEECCSSC
T ss_pred CCCCc-cCEeCH-----------HHhcCCCCCCEEEeCCCC
Confidence 98865 444444 246778888999988873
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.74 E-value=1.9e-10 Score=101.47 Aligned_cols=66 Identities=17% Similarity=0.079 Sum_probs=37.1
Q ss_pred ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCC------cCCCCCCCCEEEEecccc
Q 044279 132 FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK------WIRCAPNLQFLYVSDCQV 199 (305)
Q Consensus 132 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~------~~~~~~~L~~L~l~~~~~ 199 (305)
...++|++|++++|.+++.+......+ ....++|++|+|++| .+++.. .+...++|++|++++|..
T Consensus 180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~-L~~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLGDEGLELLAAQ-LDRNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp HTCSSCCEEECTTSSCHHHHHHHHHHH-GGGCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred hcCCCcCEEeCCCCCCCcHHHHHHHHH-HhcCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 345667777777777555442211000 134567777777777 555421 223456777777777653
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.74 E-value=3.1e-08 Score=77.64 Aligned_cols=99 Identities=16% Similarity=0.076 Sum_probs=70.4
Q ss_pred eEEEEEcCCCcccc-ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCCc--CCCCCCCCEEEE
Q 044279 118 KRLTVASPWFSSLD-FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLKW--IRCAPNLQFLYV 194 (305)
Q Consensus 118 ~~L~l~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~--~~~~~~L~~L~l 194 (305)
+.++++.+.++.++ .-.++|+.|++++|.++.++...+ ..+++|++|+|++| .++.++. +..+++|++|++
T Consensus 15 ~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~-----~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L 88 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVF-----DHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDL 88 (174)
T ss_dssp SEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTT-----TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred cEEEeCCCCCCccCCCcCCCCcEEEeCCCCccccCHHHh-----cCCcCCCEEECCCC-CCCccChhHhCCcchhhEEEC
Confidence 34555555566666 334788888888888777765442 67888999999888 7777653 567888999999
Q ss_pred eccccccccccccCCCCCccccccccccCccceeeccCcc
Q 044279 195 SDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLP 234 (305)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 234 (305)
++|. +..+++ ..+..+++|++|++++++
T Consensus 89 ~~N~-l~~l~~-----------~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 89 NDNH-LKSIPR-----------GAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CSSC-CCCCCT-----------TTTTTCTTCSEEECCSSC
T ss_pred CCCc-cceeCH-----------HHhccccCCCEEEeCCCC
Confidence 8865 444444 246778888889888873
No 144
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.70 E-value=6.9e-09 Score=80.76 Aligned_cols=86 Identities=15% Similarity=0.286 Sum_probs=40.8
Q ss_pred CccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccC--CcCCC----CCCCCEEEEeccccccccccccCC
Q 044279 136 HLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDL--KWIRC----APNLQFLYVSDCQVLSEIIGTYES 209 (305)
Q Consensus 136 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~--~~~~~----~~~L~~L~l~~~~~~~~~~~~~~~ 209 (305)
.|+.|++++|.+++.+.... ..+++|++|+|++|..+++. ..+.. +++|++|+|++|..+++...
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L-----~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl---- 132 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHM-----EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI---- 132 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGG-----TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH----
T ss_pred eEeEEeCcCCCccHHHHHHh-----cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH----
Confidence 35555555555444443332 34555555555555545542 12222 23455555555554433221
Q ss_pred CCCccccccccccCccceeeccCcccCc
Q 044279 210 PGTSEIEESHHFLSNLMVIDLQHLPSLT 237 (305)
Q Consensus 210 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 237 (305)
..+..+++|++|+|++|+.++
T Consensus 133 -------~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 133 -------IALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp -------HHGGGCTTCCEEEEESCTTCC
T ss_pred -------HHHhcCCCCCEEECCCCCCCC
Confidence 123345555555555555544
No 145
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.57 E-value=3.1e-08 Score=77.10 Aligned_cols=88 Identities=10% Similarity=0.187 Sum_probs=67.6
Q ss_pred CCccceEeeeCCCCCccC--CcCCCCCCCCEEEEeccccccccccccCCCCCccccccccc----cCccceeeccCcccC
Q 044279 163 FRNLRHLSVKDCHFMTDL--KWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHF----LSNLMVIDLQHLPSL 236 (305)
Q Consensus 163 ~~~L~~L~L~~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~l 236 (305)
-.+|++||+++|. +++. ..+..|++|++|+|++|..+++... ..+.. .++|++|+|++|+.+
T Consensus 60 ~~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL-----------~~L~~~~~~~~~L~~L~Ls~C~~I 127 (176)
T 3e4g_A 60 KYKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCL-----------ERLSQLENLQKSMLEMEIISCGNV 127 (176)
T ss_dssp CCCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHH-----------HHHHTCHHHHHHCCEEEEESCTTC
T ss_pred CceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHH-----------HHHHhcccccCCCCEEEcCCCCcC
Confidence 3569999999994 7664 4567899999999999998865432 12333 358999999999988
Q ss_pred ceecCC-CCCCCCCceEEeeCCCCCCC
Q 044279 237 TSICCR-AVPLPSLKTISVYDCPGLRK 262 (305)
Q Consensus 237 ~~~~~~-~~~~~~L~~L~l~~c~~l~~ 262 (305)
++-... ...+++|+.|++++|+.++.
T Consensus 128 TD~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 128 TDKGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp CHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred CHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence 752211 23689999999999998875
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.56 E-value=1.2e-09 Score=96.23 Aligned_cols=112 Identities=15% Similarity=0.110 Sum_probs=73.7
Q ss_pred cceEEEEEcCCCcccc---------ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccC------
Q 044279 116 CVKRLTVASPWFSSLD---------FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDL------ 180 (305)
Q Consensus 116 ~L~~L~l~~~~~~~~~---------~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~------ 180 (305)
+|++|+++.|.+++.. ...+.|+.|++++|.+++.+......+ ....++|++|+|++| .+++.
T Consensus 127 ~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~-L~~~~~L~~L~Ls~N-~l~~~g~~~L~ 204 (372)
T 3un9_A 127 RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEG-LAGNTSVTHLSLLHT-GLGDEGLELLA 204 (372)
T ss_dssp TEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHH-HHTCSSCCEEECTTS-SCHHHHHHHHH
T ss_pred hccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHH-HhcCCCcCEEeCCCC-CCCcHHHHHHH
Confidence 4777777755555433 246789999999998766543321100 145788999999999 66653
Q ss_pred CcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCce
Q 044279 181 KWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTS 238 (305)
Q Consensus 181 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 238 (305)
..+...++|++|++++|.. ...... .+...+...++|++|+|++| .++.
T Consensus 205 ~~L~~~~~L~~L~Ls~N~i-~~~g~~-------~l~~~L~~~~~L~~L~Ls~N-~i~~ 253 (372)
T 3un9_A 205 AQLDRNRQLQELNVAYNGA-GDTAAL-------ALARAAREHPSLELLHLYFN-ELSS 253 (372)
T ss_dssp HHGGGCSCCCEEECCSSCC-CHHHHH-------HHHHHHHHCSSCCEEECTTS-SCCH
T ss_pred HHHhcCCCcCeEECCCCCC-CHHHHH-------HHHHHHHhCCCCCEEeccCC-CCCH
Confidence 2345678999999999864 322110 01124557799999999999 5553
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.39 E-value=1.8e-07 Score=81.92 Aligned_cols=161 Identities=12% Similarity=0.114 Sum_probs=96.7
Q ss_pred ccchhhhcccccccccccCCccc----------cCCcccccccccceeeccccceeeceEEEeeccccccccccccccCc
Q 044279 17 ELPEAIGKLINLCHLNLSNTKIR----------ELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESL 86 (305)
Q Consensus 17 ~lp~~~~~l~~L~~L~l~~~~l~----------~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l 86 (305)
.+...+.++++|+.|.+...... .+...+..+++|+.|.++++. ...++. + .+
T Consensus 130 ~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~---------------~l~l~~-~-~~ 192 (362)
T 2ra8_A 130 GIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTN---------------NLSIGK-K-PR 192 (362)
T ss_dssp HHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCB---------------TCBCCS-C-BC
T ss_pred HHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCC---------------Cceecc-c-cC
Confidence 34555677888888877543221 233335667889999988763 112222 3 37
Q ss_pred cCccceeEEEeecCcccccccccCCCccccceEEEEE-cCC-------Ccccc-----ccCCCccEEEEeceecceeccc
Q 044279 87 ENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVA-SPW-------FSSLD-----FRMDHLETLEIVDCSLESINIY 153 (305)
Q Consensus 87 ~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~-~~~-------~~~~~-----~~~~~L~~L~l~~~~l~~~~~~ 153 (305)
++|+.|.+..+......+..+.. ...++|++|+|+ +.. +..+. ..+++|+.|++.+|.+.+....
T Consensus 193 ~~L~~L~L~~~~l~~~~l~~l~~--~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~ 270 (362)
T 2ra8_A 193 PNLKSLEIISGGLPDSVVEDILG--SDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVE 270 (362)
T ss_dssp TTCSEEEEECSBCCHHHHHHHHH--SBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHH
T ss_pred CCCcEEEEecCCCChHHHHHHHH--ccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHH
Confidence 78888888764333223323321 112448888886 211 11111 3578999999999885543221
Q ss_pred ccCCCcccCCCccceEeeeCCCCCccC-----C-cCCCCCCCCEEEEecccc
Q 044279 154 FGDQGRTYCFRNLRHLSVKDCHFMTDL-----K-WIRCAPNLQFLYVSDCQV 199 (305)
Q Consensus 154 ~~~~~~~~~~~~L~~L~L~~~~~l~~~-----~-~~~~~~~L~~L~l~~~~~ 199 (305)
.... ...+++|++|+|+.| .+++. . .+..+++|+.|++++|..
T Consensus 271 ~la~--a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 271 MFLE--SDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp HHHH--CSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred HHHh--CccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 1100 135789999999988 67662 1 224579999999999763
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.39 E-value=7.5e-07 Score=77.44 Aligned_cols=89 Identities=20% Similarity=0.128 Sum_probs=57.8
Q ss_pred CCcccc--ccCCCccEEEEec-eecceecccccCCCcccCCCccceEeeeCCCCCccCC--cCCCCCCCCEEEEeccccc
Q 044279 126 WFSSLD--FRMDHLETLEIVD-CSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK--WIRCAPNLQFLYVSDCQVL 200 (305)
Q Consensus 126 ~~~~~~--~~~~~L~~L~l~~-~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~~ 200 (305)
.++.+| ..+.+|+.|+|++ |.++.++...+ ..+++|+.|+|++| .++.++ .+..+++|++|+|++|. +
T Consensus 20 ~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~-----~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~-l 92 (347)
T 2ifg_A 20 ALDSLHHLPGAENLTELYIENQQHLQHLELRDL-----RGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFNA-L 92 (347)
T ss_dssp CCTTTTTSCSCSCCSEEECCSCSSCCEECGGGS-----CSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSSC-C
T ss_pred CCCccCCCCCCCCeeEEEccCCCCCCCcChhHh-----ccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCCc-c
Confidence 455555 4556678888875 66777775542 66788888888887 666653 45677888888888854 4
Q ss_pred cccccccCCCCCccccccccccCccceeeccCc
Q 044279 201 SEIIGTYESPGTSEIEESHHFLSNLMVIDLQHL 233 (305)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 233 (305)
..+++ ..+..++ |+.|+|.++
T Consensus 93 ~~~~~-----------~~~~~~~-L~~l~l~~N 113 (347)
T 2ifg_A 93 ESLSW-----------KTVQGLS-LQELVLSGN 113 (347)
T ss_dssp SCCCS-----------TTTCSCC-CCEEECCSS
T ss_pred ceeCH-----------HHcccCC-ceEEEeeCC
Confidence 44444 1223333 788888776
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.33 E-value=2.5e-07 Score=81.05 Aligned_cols=130 Identities=18% Similarity=0.148 Sum_probs=64.7
Q ss_pred ccceEEEEEcC-CCccccccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCC-------CCccCC-cC--
Q 044279 115 SCVKRLTVASP-WFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCH-------FMTDLK-WI-- 183 (305)
Q Consensus 115 ~~L~~L~l~~~-~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~-------~l~~~~-~~-- 183 (305)
++|++|.++.+ .+.-.+...++|+.|++..|.++........ ...+++|++|+|+.+. .+..+. .+
T Consensus 172 P~L~~L~L~g~~~l~l~~~~~~~L~~L~L~~~~l~~~~l~~l~---~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~ 248 (362)
T 2ra8_A 172 PLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDIL---GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK 248 (362)
T ss_dssp TTCCEEEEECCBTCBCCSCBCTTCSEEEEECSBCCHHHHHHHH---HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCT
T ss_pred CCCcEEEEeCCCCceeccccCCCCcEEEEecCCCChHHHHHHH---HccCCCCcEEEEeccccccccchhHHHHHHHHhc
Confidence 34666666522 1111112256677777766654433322110 1246777777765310 121221 11
Q ss_pred CCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCce-----ecCCCCCCCCCceEEeeCC
Q 044279 184 RCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTS-----ICCRAVPLPSLKTISVYDC 257 (305)
Q Consensus 184 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-----~~~~~~~~~~L~~L~l~~c 257 (305)
..+|+|+.|++.+|.......... ...+.+++|++|+|+.+ .++. +......+++|+.|++++|
T Consensus 249 ~~~p~Lr~L~L~~~~i~~~~~~~l---------a~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 249 DRFPNLKWLGIVDAEEQNVVVEMF---------LESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp TTCTTCCEEEEESCTTHHHHHHHH---------HHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred CCCCCcCEEeCCCCCCchHHHHHH---------HhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCC
Confidence 246778888777765432221100 01235677888888766 4543 2222234677788887766
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.28 E-value=9.3e-07 Score=76.86 Aligned_cols=75 Identities=15% Similarity=0.159 Sum_probs=44.7
Q ss_pred EeCCCCCCccccchhhhcccccccccccC-CccccCCc-ccccccccceeeccccceeeceEEEeecccccccccccccc
Q 044279 7 LDLSYNFDLVELPEAIGKLINLCHLNLSN-TKIRELPA-GIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLE 84 (305)
Q Consensus 7 L~l~~~~~~~~lp~~~~~l~~L~~L~l~~-~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~ 84 (305)
++.+++..+..+|. +..+.+|++|+|++ |.+..+|. .++.+++|++|+|++|.+. ...+..+.
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~--------------~~~~~~~~ 77 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR--------------FVAPDAFH 77 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC--------------EECTTGGG
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccc--------------eeCHHHhc
Confidence 45555434566666 66666666666664 66666553 3666666777776666642 22233456
Q ss_pred CccCccceeEEE
Q 044279 85 SLENIHDISITL 96 (305)
Q Consensus 85 ~l~~L~~L~l~~ 96 (305)
.+++|+.|++++
T Consensus 78 ~l~~L~~L~l~~ 89 (347)
T 2ifg_A 78 FTPRLSRLNLSF 89 (347)
T ss_dssp SCSCCCEEECCS
T ss_pred CCcCCCEEeCCC
Confidence 666666666666
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.17 E-value=6.4e-05 Score=66.47 Aligned_cols=38 Identities=21% Similarity=0.236 Sum_probs=25.0
Q ss_pred hhhcccccccccccCCccccCCcc-cccccccceeecccc
Q 044279 21 AIGKLINLCHLNLSNTKIRELPAG-IKYLKNLKILRLDVF 59 (305)
Q Consensus 21 ~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~ 59 (305)
.+.++.+|+.+.+..+ +..++.. +.++.+|+.+.+..+
T Consensus 157 aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~ 195 (394)
T 4fs7_A 157 AFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN 195 (394)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT
T ss_pred hhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC
Confidence 4677778888877543 3334433 667778888887665
No 152
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.01 E-value=6e-05 Score=66.62 Aligned_cols=206 Identities=12% Similarity=0.042 Sum_probs=117.4
Q ss_pred CCcccEEeCCCCCCccccch-hhhcccccccccccCCccccCCc-ccccccccceeeccccceeeceEEEeecccccccc
Q 044279 1 MHALAVLDLSYNFDLVELPE-AIGKLINLCHLNLSNTKIRELPA-GIKYLKNLKILRLDVFSWFSTELVALHHNFCCATT 78 (305)
Q Consensus 1 l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~ 78 (305)
|++|+.+.+..+ +..++. .+.++.+|+.+.+..+ ++.++. .+..+..|+.+.+..+.. .
T Consensus 161 c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~----------------~ 221 (394)
T 4fs7_A 161 CESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLY----------------Y 221 (394)
T ss_dssp CTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCC----------------E
T ss_pred cCCCcEEecCCc--cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCce----------------E
Confidence 567888888765 456654 4788999999998664 444443 377888999998877642 2
Q ss_pred ccccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCC--Ccccc-ccCCCccEEEEeceecceeccccc
Q 044279 79 VLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPW--FSSLD-FRMDHLETLEIVDCSLESINIYFG 155 (305)
Q Consensus 79 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~ 155 (305)
+.........|+.+.+.. . ...+.. ..-..+..++.+.+..+. +.... ..+..++.+.+.... ++...
T Consensus 222 i~~~~~~~~~l~~i~ip~--~-~~~i~~--~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~---i~~~~- 292 (394)
T 4fs7_A 222 LGDFALSKTGVKNIIIPD--S-FTELGK--SVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVI---VPEKT- 292 (394)
T ss_dssp ECTTTTTTCCCCEEEECT--T-CCEECS--STTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSE---ECTTT-
T ss_pred eehhhcccCCCceEEECC--C-ceeccc--ccccccccceeEEcCCCcceeeccccccccccceeccCcee---ecccc-
Confidence 223334445666665532 1 111110 011122336666665221 11111 556666666655432 22222
Q ss_pred CCCcccCCCccceEeeeCCCCCccCC--cCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCc
Q 044279 156 DQGRTYCFRNLRHLSVKDCHFMTDLK--WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHL 233 (305)
Q Consensus 156 ~~~~~~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 233 (305)
+..+.+|+.+.+..+ ++.++ .+..|.+|+.+++... ++.+.. ..+.++.+|+.+.+...
T Consensus 293 ----F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~-----------~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 293 ----FYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPYL--VEEIGK-----------RSFRGCTSLSNINFPLS 353 (394)
T ss_dssp ----TTTCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCTT--CCEECT-----------TTTTTCTTCCEECCCTT
T ss_pred ----ccccccccccccccc--cceechhhhcCCCCCCEEEeCCc--ccEEhH-----------HhccCCCCCCEEEECcc
Confidence 356777888877653 44442 4667778888877542 444443 24567778888877543
Q ss_pred ccCceecCCC-CCCCCCceEEee
Q 044279 234 PSLTSICCRA-VPLPSLKTISVY 255 (305)
Q Consensus 234 ~~l~~~~~~~-~~~~~L~~L~l~ 255 (305)
++.+.... ..|++|+.+.+.
T Consensus 354 --l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 354 --LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp --CCEECTTTBTTCTTCCEEEEE
T ss_pred --ccEehHHHhhCCCCCCEEEEC
Confidence 56665433 356777777774
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.85 E-value=1.2e-06 Score=69.22 Aligned_cols=119 Identities=11% Similarity=0.030 Sum_probs=69.8
Q ss_pred hhhcccccccccccCC-ccc-----cCCcccccccccceeeccccceeeceEEEeeccccccccccccccCccCccceeE
Q 044279 21 AIGKLINLCHLNLSNT-KIR-----ELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISI 94 (305)
Q Consensus 21 ~~~~l~~L~~L~l~~~-~l~-----~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l 94 (305)
.+...++|++|++++| .+. .+...+...++|++|++++|.+.+ .....+...+...++|+.|++
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~----------~g~~~l~~~L~~n~~L~~L~L 100 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSND----------PVAFALAEMLKVNNTLKSLNV 100 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCH----------HHHHHHHHHHHHCSSCCEEEC
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCCh----------HHHHHHHHHHHhCCCcCEEEC
Confidence 3566677777777777 664 233445566777888887776532 001123344555567777777
Q ss_pred EEeecCcccccccccCCCccccceEEEE--EcCCCcccc--------ccCCCccEEEEeceecce
Q 044279 95 TLCFVDTHAFCRFQSSPKLQSCVKRLTV--ASPWFSSLD--------FRMDHLETLEIVDCSLES 149 (305)
Q Consensus 95 ~~~~~~~~~~~~l~~~~~~~~~L~~L~l--~~~~~~~~~--------~~~~~L~~L~l~~~~l~~ 149 (305)
++|.........+.........|++|++ +++.+++.. ...+.|+.|++++|.+..
T Consensus 101 ~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 101 ESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp CSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred cCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 7743332222223333233344888888 566665432 556789999999887543
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.82 E-value=1.4e-05 Score=66.69 Aligned_cols=57 Identities=35% Similarity=0.362 Sum_probs=27.3
Q ss_pred CcccEEeCCCCCCcccc---chhhhcccccccccccCCccccCCccccccc--ccceeeccccc
Q 044279 2 HALAVLDLSYNFDLVEL---PEAIGKLINLCHLNLSNTKIRELPAGIKYLK--NLKILRLDVFS 60 (305)
Q Consensus 2 ~~L~~L~l~~~~~~~~l---p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~--~L~~L~l~~~~ 60 (305)
++|+.|+|++| .+..+ |..+..+++|+.|+|++|++..+ ..+..++ +|++|++.+|+
T Consensus 170 ~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Np 231 (267)
T 3rw6_A 170 PELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNS 231 (267)
T ss_dssp TTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTST
T ss_pred CCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCc
Confidence 45555555555 44332 23344555555555555555443 2233333 55555555554
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.74 E-value=1.7e-06 Score=68.35 Aligned_cols=121 Identities=13% Similarity=-0.024 Sum_probs=73.6
Q ss_pred cccccccccceeecccc-ceeeceEEEeeccccccccccccccCccCccceeEEEeecCcccccccccCCCccccceEEE
Q 044279 43 AGIKYLKNLKILRLDVF-SWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLT 121 (305)
Q Consensus 43 ~~~~~l~~L~~L~l~~~-~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~ 121 (305)
..+...++|++|++++| .+.+ .....+...+...++|+.|++++|.........+.......+.|++|+
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~----------~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~ 99 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPV----------PTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLN 99 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCH----------HHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEE
T ss_pred HHHhcCCCCCEEEecCCCCCCH----------HHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEE
Confidence 34567788999999888 6532 012234455667788888888884322222222322222234588898
Q ss_pred EEcCCCcccc--------ccCCCccEEEE--eceecceecccccCCCcccCCCccceEeeeCC
Q 044279 122 VASPWFSSLD--------FRMDHLETLEI--VDCSLESINIYFGDQGRTYCFRNLRHLSVKDC 174 (305)
Q Consensus 122 l~~~~~~~~~--------~~~~~L~~L~l--~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~ 174 (305)
++.|.+++.. ...+.|++|++ ++|.+.+.+....... ....++|++|+|++|
T Consensus 100 L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~-L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 100 VESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANM-LEKNTTLLKFGYHFT 161 (185)
T ss_dssp CCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHH-HHHCSSCCEEECCCS
T ss_pred CcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHH-HHhCCCcCEEeccCC
Confidence 8877776532 55677999999 6677655443221100 244578999999888
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.74 E-value=0.0024 Score=56.29 Aligned_cols=98 Identities=21% Similarity=0.211 Sum_probs=50.8
Q ss_pred cCCCccceEeeeCCCCCccC--CcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCce
Q 044279 161 YCFRNLRHLSVKDCHFMTDL--KWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTS 238 (305)
Q Consensus 161 ~~~~~L~~L~L~~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 238 (305)
..+.+|+.+.+... +..+ ..+..++.|+.+.+.. .+..++. ..+.++.+|+.+.|.. +++.
T Consensus 262 ~~c~~L~~i~lp~~--~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~-----------~aF~~c~~L~~i~lp~--~v~~ 324 (394)
T 4gt6_A 262 DSCAYLASVKMPDS--VVSIGTGAFMNCPALQDIEFSS--RITELPE-----------SVFAGCISLKSIDIPE--GITQ 324 (394)
T ss_dssp TTCSSCCEEECCTT--CCEECTTTTTTCTTCCEEECCT--TCCEECT-----------TTTTTCTTCCEEECCT--TCCE
T ss_pred eecccccEEecccc--cceecCcccccccccccccCCC--cccccCc-----------eeecCCCCcCEEEeCC--cccE
Confidence 45566666666543 1222 2355666677766643 2333433 2455677777777754 3555
Q ss_pred ecCCCC-CCCCCceEEeeCCCCCCCCCCCCccccCcCceE
Q 044279 239 ICCRAV-PLPSLKTISVYDCPGLRKLPLNSGSAKNSLNAI 277 (305)
Q Consensus 239 ~~~~~~-~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~i 277 (305)
+..... .|.+|+.+.+. ..++.+....-.-+.+++.|
T Consensus 325 I~~~aF~~C~~L~~i~ip--~sv~~I~~~aF~~C~~L~~i 362 (394)
T 4gt6_A 325 ILDDAFAGCEQLERIAIP--SSVTKIPESAFSNCTALNNI 362 (394)
T ss_dssp ECTTTTTTCTTCCEEEEC--TTCCBCCGGGGTTCTTCCEE
T ss_pred ehHhHhhCCCCCCEEEEC--cccCEEhHhHhhCCCCCCEE
Confidence 544333 56777777773 23555544333333333433
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.64 E-value=0.0016 Score=57.47 Aligned_cols=102 Identities=17% Similarity=0.151 Sum_probs=62.2
Q ss_pred ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCC--cCCCCCCCCEEEEeccccccccccccCC
Q 044279 132 FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK--WIRCAPNLQFLYVSDCQVLSEIIGTYES 209 (305)
Q Consensus 132 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 209 (305)
..+..|+.+.+... +..++... +..+.+|+.+.+.. .++.++ .|..|.+|+.+.+..+ ++.+..
T Consensus 262 ~~c~~L~~i~lp~~-~~~I~~~a-----F~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~---- 327 (394)
T 4gt6_A 262 DSCAYLASVKMPDS-VVSIGTGA-----FMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPEG--ITQILD---- 327 (394)
T ss_dssp TTCSSCCEEECCTT-CCEECTTT-----TTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT--CCEECT----
T ss_pred eecccccEEecccc-cceecCcc-----cccccccccccCCC--cccccCceeecCCCCcCEEEeCCc--ccEehH----
Confidence 45677777777543 34444433 35677788887754 344443 4667788888877652 444443
Q ss_pred CCCccccccccccCccceeeccCcccCceecCCC-CCCCCCceEEeeC
Q 044279 210 PGTSEIEESHHFLSNLMVIDLQHLPSLTSICCRA-VPLPSLKTISVYD 256 (305)
Q Consensus 210 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~l~~ 256 (305)
..+.++.+|+.+.|-. +++.+.... ..|++|+.+.+.+
T Consensus 328 -------~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 328 -------DAFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSG 366 (394)
T ss_dssp -------TTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESS
T ss_pred -------hHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECC
Confidence 2456777888887753 355554332 3577777777754
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.43 E-value=2.4e-05 Score=65.18 Aligned_cols=36 Identities=25% Similarity=0.305 Sum_probs=18.6
Q ss_pred CCCccceEeeeCCCCCccCCcC----CCCCCCCEEEEeccc
Q 044279 162 CFRNLRHLSVKDCHFMTDLKWI----RCAPNLQFLYVSDCQ 198 (305)
Q Consensus 162 ~~~~L~~L~L~~~~~l~~~~~~----~~~~~L~~L~l~~~~ 198 (305)
.+++|+.|+|++| .++.++.+ ..+++|+.|+|++|.
T Consensus 168 ~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~ 207 (267)
T 3rw6_A 168 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNE 207 (267)
T ss_dssp HCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSC
T ss_pred hCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCc
Confidence 4555666666655 44443322 245566666665544
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.18 E-value=0.021 Score=49.76 Aligned_cols=35 Identities=14% Similarity=0.183 Sum_probs=15.5
Q ss_pred ccccCccceeeccCcccCceecCCC-CCCCCCceEEe
Q 044279 219 HHFLSNLMVIDLQHLPSLTSICCRA-VPLPSLKTISV 254 (305)
Q Consensus 219 ~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~l 254 (305)
+.++++|+.+.+.++ .++.++... ..+.+|+.+.+
T Consensus 282 F~~c~~L~~i~l~~~-~i~~I~~~aF~~c~~L~~i~l 317 (379)
T 4h09_A 282 CSGCSNLTKVVMDNS-AIETLEPRVFMDCVKLSSVTL 317 (379)
T ss_dssp TTTCTTCCEEEECCT-TCCEECTTTTTTCTTCCEEEC
T ss_pred ccccccccccccccc-ccceehhhhhcCCCCCCEEEc
Confidence 334555555555443 344443322 23445555544
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.66 E-value=0.066 Score=46.54 Aligned_cols=101 Identities=18% Similarity=0.206 Sum_probs=64.6
Q ss_pred ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCC--cCCCCCCCCEEEEeccccccccccccCC
Q 044279 132 FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK--WIRCAPNLQFLYVSDCQVLSEIIGTYES 209 (305)
Q Consensus 132 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 209 (305)
..+..|+.+.+..+ ++.++... +..+.+|+.+.+... ++.++ .+..|.+|+.+.+.++ .++.+..
T Consensus 237 ~~~~~L~~i~lp~~-v~~I~~~a-----F~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~-~i~~I~~---- 303 (379)
T 4h09_A 237 YGMKALDEIAIPKN-VTSIGSFL-----LQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNS-AIETLEP---- 303 (379)
T ss_dssp TTCSSCCEEEECTT-CCEECTTT-----TTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCT-TCCEECT----
T ss_pred cCCccceEEEcCCC-ccEeCccc-----cceeehhcccccccc--ceecccccccccccccccccccc-ccceehh----
Confidence 55677888887654 66666554 366778888888653 44432 5667888888888763 3444444
Q ss_pred CCCccccccccccCccceeeccCcccCceecCCCC-CCCCCceEEe
Q 044279 210 PGTSEIEESHHFLSNLMVIDLQHLPSLTSICCRAV-PLPSLKTISV 254 (305)
Q Consensus 210 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~~~L~~L~l 254 (305)
..+.++.+|+.+.|.. +++.+..... .+++|+.+.+
T Consensus 304 -------~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 304 -------RVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp -------TTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCC
T ss_pred -------hhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEE
Confidence 2456778888888854 3566654432 4566666655
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.09 E-value=0.0064 Score=44.58 Aligned_cols=54 Identities=26% Similarity=0.515 Sum_probs=43.5
Q ss_pred cEEeCCCCCCcc--ccchhhhcccccccccccCCccccCCcc-cccccccceeeccccce
Q 044279 5 AVLDLSYNFDLV--ELPEAIGKLINLCHLNLSNTKIRELPAG-IKYLKNLKILRLDVFSW 61 (305)
Q Consensus 5 ~~L~l~~~~~~~--~lp~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~ 61 (305)
.+++.+++ .++ .+|..+. .+|++|+|++|++..+|.+ +..+++|++|++.+|..
T Consensus 11 ~~v~Cs~~-~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRR-GLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSS-CCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCC-CCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 35777787 777 8885432 3689999999999999876 78899999999999974
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.91 E-value=0.0043 Score=48.93 Aligned_cols=111 Identities=13% Similarity=0.143 Sum_probs=49.0
Q ss_pred cccccccccCC-ccc-----cCCcccccccccceeeccccceeeceEEEeeccccccccccccccCccCccceeEEEeec
Q 044279 26 INLCHLNLSNT-KIR-----ELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFV 99 (305)
Q Consensus 26 ~~L~~L~l~~~-~l~-----~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 99 (305)
..|++|+++++ .+. .+-..++.-+.|++|++++|.+-+ .....+...+..-+.|+.|++.++..
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd----------~ga~alA~aL~~N~tL~~L~L~~N~I 110 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISD----------SEARGLIELIETSPSLRVLNVESNFL 110 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBH----------HHHTTHHHHHHHCSSCCEEECCSSBC
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCCh----------HHHHHHHHHHhcCCccCeEecCCCcC
Confidence 45555565553 432 122234444556666666655421 00112223333444556666555332
Q ss_pred CcccccccccCCCccccceEEEEEc--C-CCcccc--------ccCCCccEEEEecee
Q 044279 100 DTHAFCRFQSSPKLQSCVKRLTVAS--P-WFSSLD--------FRMDHLETLEIVDCS 146 (305)
Q Consensus 100 ~~~~~~~l~~~~~~~~~L~~L~l~~--~-~~~~~~--------~~~~~L~~L~l~~~~ 146 (305)
.......+.........|++|+++. + .+.+.. ..-+.|..|+++.+.
T Consensus 111 g~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 111 TPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp CHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred CHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 2222233333322233366666652 1 222211 445567777776554
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.35 E-value=0.063 Score=39.15 Aligned_cols=37 Identities=27% Similarity=0.284 Sum_probs=32.3
Q ss_pred CcccEEeCCCCCCccccchh-hhcccccccccccCCccc
Q 044279 2 HALAVLDLSYNFDLVELPEA-IGKLINLCHLNLSNTKIR 39 (305)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~l~ 39 (305)
++|++|+|++| .++.+|.. +..+.+|++|+|++|.+.
T Consensus 31 ~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 31 VDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred cCCCEEECCCC-cCCccChhhhhhccccCEEEecCCCee
Confidence 37999999999 99999865 788999999999998664
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.08 E-value=0.022 Score=44.78 Aligned_cols=119 Identities=8% Similarity=-0.023 Sum_probs=62.6
Q ss_pred cccccccceeecccc-ceeeceEEEeeccccccccccccccCccCccceeEEEeecCcccccccccCCCccccceEEEEE
Q 044279 45 IKYLKNLKILRLDVF-SWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVA 123 (305)
Q Consensus 45 ~~~l~~L~~L~l~~~-~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~ 123 (305)
+..-+.|++|+++++ .+.+ .....+...+..-+.|+.|++++|.........+.........|++|+|+
T Consensus 37 l~~n~~L~~L~L~~nn~igd----------~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~ 106 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSK----------ERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVE 106 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCH----------HHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECC
T ss_pred HhcCCCccEEECCCCCCCCH----------HHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecC
Confidence 344567888888764 4321 01123445556666788888877433333333333333333448888888
Q ss_pred cCCCcccc--------ccCCCccEEEEecee---cceecccccCCCcccCCCccceEeeeCC
Q 044279 124 SPWFSSLD--------FRMDHLETLEIVDCS---LESINIYFGDQGRTYCFRNLRHLSVKDC 174 (305)
Q Consensus 124 ~~~~~~~~--------~~~~~L~~L~l~~~~---l~~~~~~~~~~~~~~~~~~L~~L~L~~~ 174 (305)
.|.+++.. .....|++|+++++. +.+......... ...-+.|++|+++.+
T Consensus 107 ~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~a-L~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 107 SNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMA-IEENESLLRVGISFA 167 (197)
T ss_dssp SSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHH-HHHCSSCCEEECCCC
T ss_pred CCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHH-HHhCCCcCeEeccCC
Confidence 77666544 445568888887542 221110000000 134567788887765
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=35.96 E-value=51 Score=22.14 Aligned_cols=34 Identities=15% Similarity=0.124 Sum_probs=16.1
Q ss_pred cCCCccceEeeeCCCCCccC--CcCCCCCCCCEEEEec
Q 044279 161 YCFRNLRHLSVKDCHFMTDL--KWIRCAPNLQFLYVSD 196 (305)
Q Consensus 161 ~~~~~L~~L~L~~~~~l~~~--~~~~~~~~L~~L~l~~ 196 (305)
.++.+|+++.|-.. ++.+ ..|..|.+|+.+.+..
T Consensus 17 ~~c~~L~~i~iP~~--v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 17 AGNTVIREITVQPN--IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTCTTCCCEEECTT--SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCCCCCcEEEcCCc--hheEcHHHHhccCCccEEEEcC
Confidence 44555555555442 2222 2344555555555544
Done!