BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044280
(268 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HCZ|X Chain X, Crystal Structure Of Expb1 (Zea M 1), A Beta-Expansin And
Group-1 Pollen Allergen From Maize
Length = 245
Score = 164 bits (414), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 92/231 (39%), Positives = 130/231 (56%), Gaps = 7/231 (3%)
Query: 39 HWLPATATWYGSPEXXXXXXXXXX-XXXLVDVKPLRARVGAVSPVLFKNGGGCGACYKVR 97
WL A ATWYG P V++ P + +FK+G GCG+CY+VR
Sbjct: 18 KWLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVR 77
Query: 98 CLDKSICSRRAVTIIVTDECPGGYCSNGRTHFDLSGAAFGRMAIAGESGELRNRGELPVI 157
C +K CS VT+ +TD Y HFDLSG AFG +A G + ++R+ G + V
Sbjct: 78 CKEKPECSGNPVTVYITDM---NYEPIAPYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVE 134
Query: 158 YRRAPCKYP-GKNIAFHVNEGSTDYWLSLLVEFEDGDGDVGSMHIREASSSEWLQMNHVW 216
+RR CKYP G+ I FH+ +G +L++LV++ DGD+ M I++ S+EW M W
Sbjct: 135 FRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQDKLSAEWKPMKLSW 194
Query: 217 GANWSI-IGGPLKGPFSVKLATLSTGRTLSARAVIPSNWSPKATYTSRLNF 266
GA W + LKGPFS++L T +G+ + A+ VIP+NW P A YTS + F
Sbjct: 195 GAIWRMDTAKALKGPFSIRL-TSESGKKVIAKDVIPANWRPDAVYTSNVQF 244
>pdb|1N10|A Chain A, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen
Allergen
pdb|1N10|B Chain B, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen
Allergen
Length = 241
Score = 154 bits (389), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 85/227 (37%), Positives = 120/227 (52%), Gaps = 7/227 (3%)
Query: 40 WLPATATWYGSPEXXXXXXXXXX-XXXLVDVKPLRARVGAVSPVLFKNGGGCGACYKVRC 98
WL A +TWYG P VD P G + +FK+G GCG+C++++C
Sbjct: 19 WLDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCFEIKC 78
Query: 99 LDKSICSRRAVTIIVTDECPGGYCSNGRTHFDLSGAAFGRMAIAGESGELRNRGELPVIY 158
CS V + +TD+ HFDLSG AFG MA G+ +LR+ GEL + +
Sbjct: 79 TKPEACSGEPVVVHITDDNEEPIAP---YHFDLSGHAFGAMAKKGDEQKLRSAGELELQF 135
Query: 159 RRAPCKYP-GKNIAFHVNEGSTDYWLSLLVEFEDGDGDVGSMHIREASSSEWLQMNHVWG 217
RR CKYP G + FHV +GS +L+LLV++ +GDGDV ++ I+E +W+++ WG
Sbjct: 136 RRVKCKYPEGTKVTFHVEKGSNPNYLALLVKYVNGDGDVVAVDIKEKGKDKWIELKESWG 195
Query: 218 ANWSI-IGGPLKGPFSVKLATLSTGRTLSARAVIPSNWSPKATYTSR 263
A W I L GPF+V+ T G A VIP W +Y S+
Sbjct: 196 AIWRIDTPDKLTGPFTVRYTT-EGGTKTEAEDVIPEGWKADTSYESK 241
>pdb|1BMW|A Chain A, A Fibronectin Type Iii Fold In Plant Allergens: The
Solution Structure Of Phl Pii From Timothy Grass Pollen,
Nmr, 38 Structures
pdb|1WHO|A Chain A, Allergen Phl P 2
pdb|1WHP|A Chain A, Allergen Phl P 2
pdb|2VXQ|A Chain A, Crystal Structure Of The Major Grass Pollen Allergen Phl P
2 In Complex With Its Specific Ige-Fab
Length = 96
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Query: 169 NIAFHVNEGSTDYWLSLLVEFEDGDGDVGSMHIREASSSEWLQMNHVWGANWSIIG-GPL 227
+ F V +GS + L++LV++E GD + + +RE S EW+ M G W+ PL
Sbjct: 3 KVTFTVEKGSNEKHLAVLVKYE-GD-TMAEVELREHGSDEWVAMTKGEGGVWTFDSEEPL 60
Query: 228 KGPFSVKLATLSTGRTLSARAVIPSNWSPKATY 260
+GPF+ + T G V+P ++ ATY
Sbjct: 61 QGPFNFRFLT-EKGMKNVFDDVVPEKYTIGATY 92
>pdb|3D30|A Chain A, Structure Of An Expansin Like Protein From Bacillus
Subtilis At 1.9a Resolution
pdb|4FER|A Chain A, Crystal Structure Of Bacillus Subtilis Expansin (Exlx1) In
Complex With Cellohexaose
pdb|4FER|B Chain B, Crystal Structure Of Bacillus Subtilis Expansin (Exlx1) In
Complex With Cellohexaose
pdb|4FFT|A Chain A, Crystal Structure Of Bacillus Subtilis Expansin (Exlx1) In
Complex With Mixed-Linkage Glucan
pdb|4FFT|B Chain B, Crystal Structure Of Bacillus Subtilis Expansin (Exlx1) In
Complex With Mixed-Linkage Glucan
pdb|4FG2|A Chain A, Crystal Structure Of Bacillus Subtilis Expansin (Exlx1) In
Complex With Cellotetraose
pdb|4FG2|B Chain B, Crystal Structure Of Bacillus Subtilis Expansin (Exlx1) In
Complex With Cellotetraose
pdb|4FG4|A Chain A, Crystal Structure Of Bacillus Subtilis Expansin (Exlx1) In
Complex With Hemithiocellodextrin
pdb|4FG4|B Chain B, Crystal Structure Of Bacillus Subtilis Expansin (Exlx1) In
Complex With Hemithiocellodextrin
Length = 208
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 62/150 (41%), Gaps = 18/150 (12%)
Query: 66 LVDVKPLRARVGAVSPVLFKNGGGCGACYKVRCLDKSICSRRAVTIIVTDECPGGYCSNG 125
L+D P + A++P N GG A L+ + T+ VTD P G
Sbjct: 24 LLDPIPSDMEITAINPADL-NYGGVKAALAGSYLEVE-GPKGKTTVYVTDLYPEG----A 77
Query: 126 RTHFDLSGAAFGRMAIAGESGELRNRGELPVIYRRAPCKYPGKNIAFHVNEGSTDYWLSL 185
R DLS AF ++ G +++ G++ + +R G N + + EGS+ +W ++
Sbjct: 78 RGALDLSPNAFRKI------GNMKD-GKINIKWRVVKAPITG-NFTYRIKEGSSRWWAAI 129
Query: 186 LVEFEDGDGDVGSMHIREASSSEWLQMNHV 215
V + M + +W+ M +
Sbjct: 130 QVR----NHKYPVMKMEYEKDGKWINMEKM 155
>pdb|3FT1|A Chain A, Crystal Structure Of Pollen Allergen Phl P 3
pdb|3FT1|B Chain B, Crystal Structure Of Pollen Allergen Phl P 3
pdb|3FT1|C Chain C, Crystal Structure Of Pollen Allergen Phl P 3
pdb|3FT1|D Chain D, Crystal Structure Of Pollen Allergen Phl P 3
pdb|3FT9|A Chain A, X-Ray Crystal Structure Of Pollen Allergen - Phl P 3
Length = 100
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 7/95 (7%)
Query: 169 NIAFHVNEGSTDYWLSLLVEFEDGDGDVGSMHIREASSSEW---LQMNHVWGANWSIIGG 225
+ F V +GS L L +++ + + +R+ S EW + +VW S
Sbjct: 3 QVTFTVQKGSDPKKLVLDIKYTRPGDSLAEVELRQHGSEEWEPLTKKGNVWEVKSS---K 59
Query: 226 PLKGPFSVKLATLSTGRTLSARAVIPSNWSPKATY 260
PL GPF+ + + R + VIP+ +S TY
Sbjct: 60 PLVGPFNFRFMSKGGMRNVFDE-VIPTAFSIGKTY 93
>pdb|2JNZ|A Chain A, Solution Structure Of Phl P 3, A Major Allergen From
Timothy Grass Pollen
Length = 108
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 7/95 (7%)
Query: 169 NIAFHVNEGSTDYWLSLLVEFEDGDGDVGSMHIREASSSEW---LQMNHVWGANWSIIGG 225
+ F V +GS L L +++ + + +R+ S EW + +VW S
Sbjct: 14 QVTFTVQKGSDPKKLVLDIKYTRPGDSLAEVELRQHGSEEWEPLTKKGNVWEVKSS---K 70
Query: 226 PLKGPFSVKLATLSTGRTLSARAVIPSNWSPKATY 260
PL GPF+ + + R + VIP+ +S TY
Sbjct: 71 PLVGPFNFRFMSKGGMRNV-FDEVIPTAFSIGKTY 104
>pdb|2BH0|A Chain A, Crystal Structure Of A Semet Derivative Of Expa From
Bacillus Subtilis At 2.5 Angstrom
Length = 208
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 14/122 (11%)
Query: 66 LVDVKPLRARVGAVSPVLFKNGGGCGACYKVRCLDKSICSRRAVTIIVTDECPGGYCSNG 125
L+D P + A++P N GG A L+ + T+ VTD P G
Sbjct: 24 LLDPIPSDXEITAINPADL-NYGGVKAALAGSYLEVE-GPKGKTTVYVTDLYPEG----A 77
Query: 126 RTHFDLSGAAFGRMAIAGESGELRNRGELPVIYRRAPCKYPGKNIAFHVNEGSTDYWLSL 185
R DLS AF ++ G ++ G++ + +R G N + + EGS+ +W ++
Sbjct: 78 RGALDLSPNAFRKI------GNXKD-GKINIKWRVVKAPITG-NFTYRIKEGSSRWWAAI 129
Query: 186 LV 187
V
Sbjct: 130 QV 131
>pdb|4H0O|A Chain A, Crystal Structure Of Acetate Kinase From Entamoeba
Histolytica
pdb|4H0O|B Chain B, Crystal Structure Of Acetate Kinase From Entamoeba
Histolytica
Length = 404
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 77 GAVSPVLFKNGGGCGACYKVRCLDKSICSRRAVTIIVT 114
G++S VL N G YKV C D +CS ++ + VT
Sbjct: 11 GSMSNVLIFNVGSSSLTYKVFCSDNIVCSGKSNRVNVT 48
>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
pdb|1O0E|B Chain B, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
Length = 208
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 5/100 (5%)
Query: 75 RVGAVSPVLFKNGGGCGACYKVRCLD--KSICSRRAVTIIVTDECPGGYCSNGRTHFDLS 132
+ GAV+PV KN G CG+C+ + +SI R +I E C + H L
Sbjct: 9 KKGAVTPV--KNQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQELVDCDK-KNHGCLG 65
Query: 133 GAAFGRMAIAGESGELRNRGELPVIYRRAPCKYPGKNIAF 172
GA +G + + P + PC+ K ++
Sbjct: 66 GAFVFAYQYIINNGGIDTQANYPYKAVQGPCQAASKVVSI 105
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,485,843
Number of Sequences: 62578
Number of extensions: 352941
Number of successful extensions: 600
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 588
Number of HSP's gapped (non-prelim): 11
length of query: 268
length of database: 14,973,337
effective HSP length: 97
effective length of query: 171
effective length of database: 8,903,271
effective search space: 1522459341
effective search space used: 1522459341
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)