Query 044280
Match_columns 268
No_of_seqs 145 out of 1073
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 13:07:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044280.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044280hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00193 expansin-A; Provision 100.0 1.9E-62 4.1E-67 439.9 28.0 239 12-266 5-256 (256)
2 PLN03023 Expansin-like B1; Pro 100.0 4E-62 8.7E-67 435.7 26.6 224 36-267 21-247 (247)
3 PLN00050 expansin A; Provision 100.0 1.4E-60 3.1E-65 426.1 26.9 216 37-266 22-247 (247)
4 COG4305 Endoglucanase C-termin 100.0 2.5E-29 5.5E-34 211.2 21.1 199 37-267 27-231 (232)
5 PLN03024 Putative EG45-like do 99.9 6.9E-26 1.5E-30 184.0 11.4 100 39-159 20-124 (125)
6 PLN00115 pollen allergen group 99.9 1.4E-24 2.9E-29 174.4 11.8 93 168-266 24-118 (118)
7 PF01357 Pollen_allerg_1: Poll 99.9 7.9E-24 1.7E-28 160.4 10.8 81 170-251 1-82 (82)
8 smart00837 DPBB_1 Rare lipopro 99.9 1.4E-22 3E-27 155.1 7.5 76 76-158 1-87 (87)
9 PF03330 DPBB_1: Rare lipoprot 99.8 1.5E-18 3.3E-23 129.8 7.1 72 76-158 1-78 (78)
10 PF00967 Barwin: Barwin family 99.1 9.7E-11 2.1E-15 92.8 3.6 64 86-163 56-119 (119)
11 PF07249 Cerato-platanin: Cera 98.3 3.7E-06 8.1E-11 67.9 9.0 70 74-162 43-113 (119)
12 TIGR00413 rlpA rare lipoprotei 97.4 0.0015 3.3E-08 57.4 10.7 96 43-166 1-96 (208)
13 COG0797 RlpA Lipoproteins [Cel 97.1 0.0015 3.2E-08 58.4 7.4 61 89-164 118-178 (233)
14 PRK10672 rare lipoprotein A; P 96.4 0.037 8E-07 52.6 11.3 93 42-162 80-172 (361)
15 PF02015 Glyco_hydro_45: Glyco 94.2 0.042 9.2E-07 48.2 3.2 54 75-133 69-122 (201)
16 PF03404 Mo-co_dimer: Mo-co ox 74.8 8.2 0.00018 31.5 5.5 23 192-214 38-61 (131)
17 cd02110 SO_family_Moco_dimer S 66.8 14 0.00031 34.6 6.0 52 191-243 233-293 (317)
18 PF12863 DUF3821: Domain of un 49.9 97 0.0021 27.5 7.9 95 127-246 48-146 (209)
19 TIGR02588 conserved hypothetic 46.6 93 0.002 25.4 6.6 68 169-237 35-118 (122)
20 cd02114 bact_SorA_Moco sulfite 43.6 63 0.0014 31.0 6.2 50 192-242 286-344 (367)
21 cd02113 bact_SoxC_Moco bacteri 39.0 75 0.0016 30.1 5.8 51 191-242 235-293 (326)
22 PLN00177 sulfite oxidase; Prov 37.5 74 0.0016 30.9 5.6 22 192-213 294-315 (393)
23 TIGR02934 nifT_nitrog probable 34.0 1.9E+02 0.004 21.1 6.2 51 183-236 13-65 (67)
24 cd02111 eukary_SO_Moco molybdo 31.6 1.3E+02 0.0028 28.9 6.3 23 191-213 273-295 (365)
25 COG2372 CopC Uncharacterized p 31.3 74 0.0016 26.1 3.8 27 149-176 97-126 (127)
26 PF04620 FlaA: Flagellar filam 27.3 1.6E+02 0.0035 26.2 5.7 43 169-213 109-151 (217)
27 PRK10301 hypothetical protein; 27.2 93 0.002 25.1 3.8 26 149-175 96-124 (124)
28 cd02112 eukary_NR_Moco molybdo 25.4 1.5E+02 0.0032 28.7 5.5 20 194-213 300-319 (386)
29 cd02854 Glycogen_branching_enz 24.6 2.1E+02 0.0045 22.0 5.2 48 196-245 16-76 (99)
30 COG2967 ApaG Uncharacterized p 24.5 3.5E+02 0.0077 22.1 6.5 19 200-222 35-53 (126)
31 PF06988 NifT: NifT/FixU prote 24.1 77 0.0017 22.9 2.4 37 195-234 25-63 (64)
32 KOG4192 Uncharacterized conser 23.7 3.5E+02 0.0075 22.2 6.3 106 86-214 10-124 (134)
No 1
>PLN00193 expansin-A; Provisional
Probab=100.00 E-value=1.9e-62 Score=439.85 Aligned_cols=239 Identities=33% Similarity=0.712 Sum_probs=209.5
Q ss_pred HHHHHHHHHHhhcccCCccccccCCCCCeeeEEEEEcCCCCCCCCCcCCCCCCcCCCCCCCCCeEEEcChhhcCCCCCCC
Q 044280 12 VLTFFLLLAFKCSVVAPTQLNHQLSEPHWLPATATWYGSPEGDGSDGGACGYGSLVDVKPLRARVGAVSPVLFKNGGGCG 91 (268)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~aT~Yg~~~g~g~~~GaCGyg~~~~~~p~~~~~aA~s~~~~~~g~~CG 91 (268)
+|.|.+|+-|+|.+.. +......++|++++|||||.+++.++.+|||||| +....+++.++||+|+++|++|++||
T Consensus 5 ~~~~~~~~~~~~~~~~---~~~~~~~~~W~~a~AT~Yg~~d~~gt~gGACGYg-~l~~~~~g~~~AAls~~lf~~G~~CG 80 (256)
T PLN00193 5 LLGLAILLQFCCYLFI---NVNAFTPSGWTKAHATFYGGSDASGTMGGACGYG-NLYSTGYGTRTAALSTALFNDGASCG 80 (256)
T ss_pred hHHHHHHHHHHHHHHh---hccCcCCCCceeeEEEEcCCCCCCCCCCcccCCC-CccccCCCceeeecCHhHccCCcccc
Confidence 4556666666664422 2234456689999999999999888899999995 55567889999999999999999999
Q ss_pred ceEEEEeC---CCCCccCC-cEEEEEEccCCCC---------CCCCCCCceeeCHHHHhhhhhcCCccccccCCeecEEE
Q 044280 92 ACYKVRCL---DKSICSRR-AVTIIVTDECPGG---------YCSNGRTHFDLSGAAFGRMAIAGESGELRNRGELPVIY 158 (268)
Q Consensus 92 ~C~~V~c~---~~~~C~~~-sv~V~VtD~Cp~~---------~C~~~~~~~DLs~~AF~~la~~~~~~~~~~~G~~~I~w 158 (268)
+||||+|. ++..|.++ +|+|+|||.||++ ||.+++.|||||.+||.+||. +..|+++|+|
T Consensus 81 aCyev~C~~~~~~~~C~~g~sV~Vt~td~CP~n~~~~~~~ggwC~~~~~HFDLS~~AF~~iA~-------~~~Giv~V~y 153 (256)
T PLN00193 81 QCYRIMCDYQADSRWCIKGASVTITATNFCPPNYALPNNNGGWCNPPLQHFDMAQPAWEKIGI-------YRGGIVPVLF 153 (256)
T ss_pred CeEEEECCCCCCCccccCCCeEEEEEecCCCCcccccccCCCcCCCCCcccccCHHHHHHHhh-------hcCCeEeEEE
Confidence 99999995 45579765 8999999999962 899888999999999999996 4799999999
Q ss_pred EEEeeCCCCcceEEEEccCCCCceEEEEEEeeCCCCCeeEEEEEecCCCCeEEccccCCceEEEcCCCCCcceEEEEEEC
Q 044280 159 RRAPCKYPGKNIAFHVNEGSTDYWLSLLVEFEDGDGDVGSMHIREASSSEWLQMNHVWGANWSIIGGPLKGPFSVKLATL 238 (268)
Q Consensus 159 ~~V~C~~~g~ni~~~vk~Gss~~w~ai~v~n~~g~~~I~sVei~~~g~~~w~~m~r~~gn~W~~~~~~~~~p~~lRiTs~ 238 (268)
|+|+|+++| ||+|++++ ++||++++|.|++|+++|++|+|++++ ++|++|+|+||++|+++..+...||+||||+
T Consensus 154 rRVpC~~~G-~i~f~v~g--n~y~~~vlv~nv~G~gdV~~v~Ik~~~-~~W~~M~R~wGa~W~~~~~l~g~plsfRvts- 228 (256)
T PLN00193 154 QRVPCKKHG-GVRFTING--RDYFELVLISNVGGAGSIQSVSIKGSK-TGWMAMSRNWGANWQSNAYLDGQSLSFKVTT- 228 (256)
T ss_pred EEeccccCC-CcEEEEcC--CccEEEEEEEEeCCCccEEEEEEecCC-CCeeECcccccceeEecCCCCCCCEEEEEEE-
Confidence 999999999 99999984 899999999999999999999999875 5899999999999999644445599999999
Q ss_pred cCCeEEEEccccCCCCCCCeEEecCCCC
Q 044280 239 STGRTLSARAVIPSNWSPKATYTSRLNF 266 (268)
Q Consensus 239 ~~G~~v~~~~vip~~~~~g~~y~t~~QF 266 (268)
.+|+++++.||||++|++|++|++.+||
T Consensus 229 ~~G~~~~~~~viPa~W~~G~ty~s~vqf 256 (256)
T PLN00193 229 TDGQTRFFLNVVPANWGFGQTFSSSVQF 256 (256)
T ss_pred cCCeEEEECceeCCCCCCCCeEecCccC
Confidence 9999999999999999999999999998
No 2
>PLN03023 Expansin-like B1; Provisional
Probab=100.00 E-value=4e-62 Score=435.72 Aligned_cols=224 Identities=36% Similarity=0.711 Sum_probs=204.1
Q ss_pred CCCCeeeEEEEEcCCCCCCCCCcCCCCCCcCCCCCCCCCeEEEcChhhcCCCCCCCceEEEEeCCCCCccCCcEEEEEEc
Q 044280 36 SEPHWLPATATWYGSPEGDGSDGGACGYGSLVDVKPLRARVGAVSPVLFKNGGGCGACYKVRCLDKSICSRRAVTIIVTD 115 (268)
Q Consensus 36 ~~~~~~~g~aT~Yg~~~g~g~~~GaCGyg~~~~~~p~~~~~aA~s~~~~~~g~~CG~C~~V~c~~~~~C~~~sv~V~VtD 115 (268)
..++|++++|||||++++.|+.+|||||| +...+.++.++||++ +||++|++||+||||+|.++..|++++|+|+|||
T Consensus 21 ~~~~W~~a~AT~Yg~~~g~gt~gGACGYg-~~~~~~~g~~~aa~s-~Lf~~G~~CGaCy~irC~~~~~C~~~~v~V~iTd 98 (247)
T PLN03023 21 KSQDFTYSRATYYGSPDCLGTPTGACGFG-EYGRTVNGGNVAGVS-RLYRNGTGCGACYQVRCKAPNLCSDDGVNVVVTD 98 (247)
T ss_pred hcCCcccceEEEeCCCCCCCCCCccccCC-ccccCCCcceeeeeh-hhhcCCchhcccEEeecCCCCccCCCCeEEEEEe
Confidence 34569999999999999999999999994 677777888999998 9999999999999999998889999999999999
Q ss_pred cCCCCCCCCCCCceeeCHHHHhhhhhcCCccccccCCeecEEEEEEeeCCCCcceEEEEccCCC-CceEEEEEEeeCCCC
Q 044280 116 ECPGGYCSNGRTHFDLSGAAFGRMAIAGESGELRNRGELPVIYRRAPCKYPGKNIAFHVNEGST-DYWLSLLVEFEDGDG 194 (268)
Q Consensus 116 ~Cp~~~C~~~~~~~DLs~~AF~~la~~~~~~~~~~~G~~~I~w~~V~C~~~g~ni~~~vk~Gss-~~w~ai~v~n~~g~~ 194 (268)
.||. + +.|||||.+||.+||.++++.+++..|+++|+||||+|.++|++|+|+|+++|+ ++|++++|.|++|++
T Consensus 99 ~~~~--~---~~hFdLS~~AF~~iA~pg~~~~l~~aGiv~v~YrRVpC~~~G~~i~F~V~~~s~~p~yl~vlv~~vgG~G 173 (247)
T PLN03023 99 YGEG--D---KTDFILSPRAYARLARPNMAAELFAYGVVDVEYRRIPCRYAGYNLFFKVHEHSRFPDYLAIVMLYQAGQN 173 (247)
T ss_pred CCCC--C---CCccccCHHHHHHHhCccccchhccCcEEEeEEEEEecccCCCceEEEEecCCCCCceEEEEEEEcCCCc
Confidence 9986 4 479999999999999999999999999999999999999998899999999996 999999999999999
Q ss_pred CeeEEEEEecCCCCeEEccccCCceEEEcCCCCCcceEEEEEEC-cCCe-EEEEccccCCCCCCCeEEecCCCCC
Q 044280 195 DVGSMHIREASSSEWLQMNHVWGANWSIIGGPLKGPFSVKLATL-STGR-TLSARAVIPSNWSPKATYTSRLNFS 267 (268)
Q Consensus 195 ~I~sVei~~~g~~~w~~m~r~~gn~W~~~~~~~~~p~~lRiTs~-~~G~-~v~~~~vip~~~~~g~~y~t~~QF~ 267 (268)
+|++|||+++++..|++|+|+||++|+++ .++++||+||++.. .+|+ +|++.||||++|++|++|++++||.
T Consensus 174 dI~~V~Ik~~~~~~W~~M~rnwGa~W~~~-~~l~Gp~slrf~v~~~~g~~~vva~nViPa~Wk~G~TY~s~vq~~ 247 (247)
T PLN03023 174 DILAVEIWQEDCKEWRGMRKAYGAVWDMP-NPPKGPITLRFQVSGSAGQTWVQAKNVIPSDWKAGVAYDSNIQLD 247 (247)
T ss_pred cEEEEEEEecCCCCceECccCCcceeEcC-CCCCCceeEEEEEEeCCCcEEEEECceeCCCCCCCCEEecccccC
Confidence 99999999987789999999999999995 56888888887430 3664 5889999999999999999999995
No 3
>PLN00050 expansin A; Provisional
Probab=100.00 E-value=1.4e-60 Score=426.07 Aligned_cols=216 Identities=36% Similarity=0.732 Sum_probs=196.9
Q ss_pred CCCeeeEEEEEcCCCCCCCCCcCCCCCCcCCCCCCCCCeEEEcChhhcCCCCCCCceEEEEeCCC-CCccCCcEEEEEEc
Q 044280 37 EPHWLPATATWYGSPEGDGSDGGACGYGSLVDVKPLRARVGAVSPVLFKNGGGCGACYKVRCLDK-SICSRRAVTIIVTD 115 (268)
Q Consensus 37 ~~~~~~g~aT~Yg~~~g~g~~~GaCGyg~~~~~~p~~~~~aA~s~~~~~~g~~CG~C~~V~c~~~-~~C~~~sv~V~VtD 115 (268)
..+|..++|||||.+++.|+.+|||||| +...++++.++||+|+.+|++|++||+||||+|++. ..|.+++|+|+|||
T Consensus 22 ~~~W~~a~AT~Yg~~dg~gt~gGACGYg-~l~~~~~g~~~AAls~~lf~~G~~CGaCyeV~C~~~~~~C~~gsV~V~itd 100 (247)
T PLN00050 22 GSGWTGAHATFYGGGDASGTMGGACGYG-NLYSQGYGTNTAALSTALFNNGLSCGACFEIKCVNDNIWCLPGSIIITATN 100 (247)
T ss_pred CCCccccEEEEcCCCCCCCCCCcccCCC-CccccCCCceeeeccHhHccCCccccceEEEEcCCCCcccCCCcEEEEEec
Confidence 4579999999999999988999999995 555668899999999999999999999999999765 36999999999999
Q ss_pred cCCC---------CCCCCCCCceeeCHHHHhhhhhcCCccccccCCeecEEEEEEeeCCCCcceEEEEccCCCCceEEEE
Q 044280 116 ECPG---------GYCSNGRTHFDLSGAAFGRMAIAGESGELRNRGELPVIYRRAPCKYPGKNIAFHVNEGSTDYWLSLL 186 (268)
Q Consensus 116 ~Cp~---------~~C~~~~~~~DLs~~AF~~la~~~~~~~~~~~G~~~I~w~~V~C~~~g~ni~~~vk~Gss~~w~ai~ 186 (268)
.||+ +||.+++.|||||.+||.+||. +..|+++|+||+|+|+++| ||+|+++++ +||++++
T Consensus 101 ~CP~~~~~~~~~~gwC~~~~~hFDLS~~AF~~iA~-------~~aGii~V~yRRVpC~~~G-~i~f~v~g~--sy~~~vl 170 (247)
T PLN00050 101 FCPPNLALPNNDGGWCNPPQQHFDLSQPVFQKIAQ-------YKAGIVPVQYRRVACRKSG-GIRFTINGH--SYFNLVL 170 (247)
T ss_pred CCCCCcCcCccCCCcCCCCCcccccCHHHHHHHhh-------hcCCeeeeEEEEecCcCCC-CeEEEEcCC--ceeEEEE
Confidence 9996 2899888999999999999997 4789999999999999999 999999864 4999999
Q ss_pred EEeeCCCCCeeEEEEEecCCCCeEEccccCCceEEEcCCCCCcceEEEEEECcCCeEEEEccccCCCCCCCeEEecCCCC
Q 044280 187 VEFEDGDGDVGSMHIREASSSEWLQMNHVWGANWSIIGGPLKGPFSVKLATLSTGRTLSARAVIPSNWSPKATYTSRLNF 266 (268)
Q Consensus 187 v~n~~g~~~I~sVei~~~g~~~w~~m~r~~gn~W~~~~~~~~~p~~lRiTs~~~G~~v~~~~vip~~~~~g~~y~t~~QF 266 (268)
|.|++|+++|++|+|++++ ++|++|+|+||++|+++..+...||+||||+ .+|+++++.||||++|++|++|++. ||
T Consensus 171 v~nv~G~gdi~~V~ikg~~-~~W~~M~R~wGa~W~~~~~l~g~~lsfRvt~-~~G~~~~~~~V~Pa~W~~G~ty~~~-~f 247 (247)
T PLN00050 171 ITNVGGAGDIVAVSIKGSK-SNWQAMSRNWGQNWQSNSYLNGQALSFKVTT-SDGRTVISNNAAPSNWAFGQTYTGM-QF 247 (247)
T ss_pred EEEcCCCccEEEEEEecCC-CCeeECccccCceeEccCCCCCCcEEEEEEe-cCCcEEEECceeCCCCCCCCeEecC-cC
Confidence 9999999999999999874 5899999999999999644445599999999 9999999999999999999999994 98
No 4
>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism]
Probab=99.97 E-value=2.5e-29 Score=211.18 Aligned_cols=199 Identities=24% Similarity=0.399 Sum_probs=164.4
Q ss_pred CCCeeeEEEEEcCCCCCCCCCcCCCCCCcCCCCCCCCCeEEEcChhhcCCC----CCCCceEEEEeCCCCCccCCcEEEE
Q 044280 37 EPHWLPATATWYGSPEGDGSDGGACGYGSLVDVKPLRARVGAVSPVLFKNG----GGCGACYKVRCLDKSICSRRAVTII 112 (268)
Q Consensus 37 ~~~~~~g~aT~Yg~~~g~g~~~GaCGyg~~~~~~p~~~~~aA~s~~~~~~g----~~CG~C~~V~c~~~~~C~~~sv~V~ 112 (268)
-.+.+.|.|||-+.. .++||=-+ ++.+.+..+.|+|...-+-| +.-|+.++|.++ ++.++|.
T Consensus 27 wd~~f~G~ATyTgsG----YsGGAflL----DPI~sd~eITAlNPaqlNlGGipAAmAGaYLrVqGP------KG~TTVY 92 (232)
T COG4305 27 WDDLFEGYATYTGSG----YSGGAFLL----DPIPSDMEITALNPAQLNLGGIPAAMAGAYLRVQGP------KGKTTVY 92 (232)
T ss_pred cccccceeEEEeccc----ccCceEEe----cCcCCcceeeecCHHHcccCCchhhhccceEEEECC------CCceEEE
Confidence 445679999998873 45777654 44566788999998877643 789999999997 7789999
Q ss_pred EEccCCCCCCCCCCCceeeCHHHHhhhhhcCCccccccCCeecEEEEEEeeCCCCcceEEEEccCCCCceEEEEEEeeCC
Q 044280 113 VTDECPGGYCSNGRTHFDLSGAAFGRMAIAGESGELRNRGELPVIYRRAPCKYPGKNIAFHVNEGSTDYWLSLLVEFEDG 192 (268)
Q Consensus 113 VtD~Cp~~~C~~~~~~~DLs~~AF~~la~~~~~~~~~~~G~~~I~w~~V~C~~~g~ni~~~vk~Gss~~w~ai~v~n~~g 192 (268)
|||.-|+ -+ ++.||||+.||.+|.+ +.+|+|+|+||.|+-|.+| |+.+++||||+.||-+|||+||+
T Consensus 93 VTDlYPe--ga--sGaLDLSpNAFakIGn-------m~qGrIpvqWrvv~aPvtG-N~~YRiKeGSs~WWAAIQVRnH~- 159 (232)
T COG4305 93 VTDLYPE--GA--SGALDLSPNAFAKIGN-------MKQGRIPVQWRVVKAPVTG-NFTYRIKEGSSRWWAAIQVRNHK- 159 (232)
T ss_pred Eeccccc--cc--ccccccChHHHhhhcc-------hhcCccceeEEEecccccc-cEEEEEecCCccceeeeeeeccc-
Confidence 9999998 33 4799999999999986 5899999999999999999 99999999999999999999999
Q ss_pred CCCeeEEEEEecCCCCeEEccccCCceEEEcCCCCCcceEEEEEECcCCeEEEEc-cccCCCCCC-CeEEecCCCCC
Q 044280 193 DGDVGSMHIREASSSEWLQMNHVWGANWSIIGGPLKGPFSVKLATLSTGRTLSAR-AVIPSNWSP-KATYTSRLNFS 267 (268)
Q Consensus 193 ~~~I~sVei~~~g~~~w~~m~r~~gn~W~~~~~~~~~p~~lRiTs~~~G~~v~~~-~vip~~~~~-g~~y~t~~QF~ 267 (268)
.||.++|+... +.|..|.+.+||.|.- .+...+|+.+|+|+ +.|+.++.. -.+|..-.. .-+..+++||+
T Consensus 160 -yPV~KlE~~qd--g~WinlpK~dYNhFVg-T~LG~~pL~~RmTD-IRG~~l~DtlP~Lpk~asSKaY~V~G~VQFs 231 (232)
T COG4305 160 -YPVMKLEYEQD--GKWINLPKMDYNHFVG-TNLGTGPLKVRMTD-IRGKVLKDTLPKLPKSASSKAYTVPGHVQFS 231 (232)
T ss_pred -CceEEEEEecC--CeEeeccccccceeec-cccCCCceEEEEee-cccceeecccccccccccCCceeecceeecC
Confidence 99999999876 7899999999977764 35668999999999 999999765 234432111 12346788886
No 5
>PLN03024 Putative EG45-like domain containing protein 1; Provisional
Probab=99.93 E-value=6.9e-26 Score=184.00 Aligned_cols=100 Identities=32% Similarity=0.605 Sum_probs=84.7
Q ss_pred CeeeEEEEEcCCCCCCCCCcCCCCCCcCCCCCCCCCeEEEcChhhcCCCCCCCceEEEEeCCC-----CCccCCcEEEEE
Q 044280 39 HWLPATATWYGSPEGDGSDGGACGYGSLVDVKPLRARVGAVSPVLFKNGGGCGACYKVRCLDK-----SICSRRAVTIIV 113 (268)
Q Consensus 39 ~~~~g~aT~Yg~~~g~g~~~GaCGyg~~~~~~p~~~~~aA~s~~~~~~g~~CG~C~~V~c~~~-----~~C~~~sv~V~V 113 (268)
....|+||||+.. ..|||+. . .+++.++||+|+.+|++|+.||+||||+|.++ ..|++++|+|+|
T Consensus 20 ~~~~G~AT~Y~~~-----~~gAC~~-~----~~~g~~iaAls~~lf~~G~~CG~c~~V~C~~~~~~~~~~c~gksV~V~V 89 (125)
T PLN03024 20 YATPGIATFYTSY-----TPSACYR-G----TSFGVMIAAASDSLWNNGRVCGKMFTVKCKGPRNAVPHPCTGKSVTVKI 89 (125)
T ss_pred cccceEEEEeCCC-----CCccccC-C----CCCCCEeEEeCHHHcCCCcccCceEEEEECCCCccccccccCCeEEEEE
Confidence 3457999999864 2579944 3 24688999999999999999999999999764 369999999999
Q ss_pred EccCCCCCCCCCCCceeeCHHHHhhhhhcCCccccccCCeecEEEE
Q 044280 114 TDECPGGYCSNGRTHFDLSGAAFGRMAIAGESGELRNRGELPVIYR 159 (268)
Q Consensus 114 tD~Cp~~~C~~~~~~~DLs~~AF~~la~~~~~~~~~~~G~~~I~w~ 159 (268)
+|+||++ |. .|||||++||.+||++ +.|+++|+|.
T Consensus 90 tD~CP~~-C~---~~~DLS~~AF~~iA~~-------~aG~v~V~y~ 124 (125)
T PLN03024 90 VDHCPSG-CA---STLDLSREAFAQIANP-------VAGIINIDYI 124 (125)
T ss_pred EcCCCCC-CC---CceEcCHHHHHHhcCc-------cCCEEEEEEe
Confidence 9999941 75 5999999999999974 7899999996
No 6
>PLN00115 pollen allergen group 3; Provisional
Probab=99.92 E-value=1.4e-24 Score=174.42 Aligned_cols=93 Identities=25% Similarity=0.571 Sum_probs=86.1
Q ss_pred cceEEEEccCCCCceEEEEEEeeCCCCCeeEEEEEecCCCCeE-EccccCCceEEEc-CCCCCcceEEEEEECcCCeEEE
Q 044280 168 KNIAFHVNEGSTDYWLSLLVEFEDGDGDVGSMHIREASSSEWL-QMNHVWGANWSII-GGPLKGPFSVKLATLSTGRTLS 245 (268)
Q Consensus 168 ~ni~~~vk~Gss~~w~ai~v~n~~g~~~I~sVei~~~g~~~w~-~m~r~~gn~W~~~-~~~~~~p~~lRiTs~~~G~~v~ 245 (268)
++|+|+|++|||++||+|.+ + ++|.+|||+++++..|+ +|+|+||++|+++ +.++++||+||+|+ .+|++++
T Consensus 24 ~~v~F~V~~gSnp~yL~ll~---~--~dI~~V~Ik~~g~~~W~~~M~rswGavW~~~s~~pl~GPlS~R~t~-~~G~~~v 97 (118)
T PLN00115 24 TEVTFKVGKGSSSTSLELVT---N--VAISEVEIKEKGAKDWVDDLKESSTNTWTLKSKAPLKGPFSVRFLV-KGGGYRV 97 (118)
T ss_pred CceEEEECCCCCcceEEEEE---e--CCEEEEEEeecCCCcccCccccCccceeEecCCCCCCCceEEEEEE-eCCCEEE
Confidence 59999999999999998876 3 56999999999888999 9999999999994 45788999999999 8999999
Q ss_pred EccccCCCCCCCeEEecCCCC
Q 044280 246 ARAVIPSNWSPKATYTSRLNF 266 (268)
Q Consensus 246 ~~~vip~~~~~g~~y~t~~QF 266 (268)
++||||++|++|++|++++||
T Consensus 98 a~nViPa~Wk~G~tY~s~vq~ 118 (118)
T PLN00115 98 VDDVIPESFKAGSVYKTGIQV 118 (118)
T ss_pred ECceECCCCCCCCEEeccccC
Confidence 999999999999999999998
No 7
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []. They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.
Probab=99.91 E-value=7.9e-24 Score=160.42 Aligned_cols=81 Identities=37% Similarity=0.822 Sum_probs=68.9
Q ss_pred eEEEEccCCCCceEEEEEEeeCCCCCeeEEEEEecCCCCeEEccccCCceEEEcCCCCCcceEEEEEECcC-CeEEEEcc
Q 044280 170 IAFHVNEGSTDYWLSLLVEFEDGDGDVGSMHIREASSSEWLQMNHVWGANWSIIGGPLKGPFSVKLATLST-GRTLSARA 248 (268)
Q Consensus 170 i~~~vk~Gss~~w~ai~v~n~~g~~~I~sVei~~~g~~~w~~m~r~~gn~W~~~~~~~~~p~~lRiTs~~~-G~~v~~~~ 248 (268)
|+|+|++||++|||+|+|.|++|.++|++|||+++++.+|++|+|+||++|+++.+++++||+||||+ .+ |++++++|
T Consensus 1 v~f~V~~gS~~~~l~v~v~n~gG~gdi~~Vevk~~~s~~W~~m~r~wGa~W~~~~~~~~~pls~Rvts-~~~G~~vv~~n 79 (82)
T PF01357_consen 1 VRFTVKGGSNPYYLAVLVKNVGGDGDIKAVEVKQSGSGNWIPMKRSWGAVWQIDSNPPGGPLSFRVTS-GDSGQTVVADN 79 (82)
T ss_dssp EEEEE-TT-BTTEEEEEEEECCTTS-EEEEEEEETTSSS-EE-EEECTTEEEEE-SS--SSEEEEEEE-TTTSEEEEEEE
T ss_pred CEEEECCCCCCcEEEEEEEEcCCCccEEEEEEEeCCCCCceEeecCcCceEEECCCCcCCCEEEEEEE-cCCCeEEEEec
Confidence 78999999999999999999999999999999999888999999999999999657889999999999 66 99999999
Q ss_pred ccC
Q 044280 249 VIP 251 (268)
Q Consensus 249 vip 251 (268)
|||
T Consensus 80 ViP 82 (82)
T PF01357_consen 80 VIP 82 (82)
T ss_dssp EE-
T ss_pred ccC
Confidence 998
No 8
>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel. Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.
Probab=99.87 E-value=1.4e-22 Score=155.13 Aligned_cols=76 Identities=42% Similarity=0.888 Sum_probs=67.8
Q ss_pred EEEcChhhcCCCCCCCceEEEEeCC-CCCccCC-cEEEEEEccCCCC---------CCCCCCCceeeCHHHHhhhhhcCC
Q 044280 76 VGAVSPVLFKNGGGCGACYKVRCLD-KSICSRR-AVTIIVTDECPGG---------YCSNGRTHFDLSGAAFGRMAIAGE 144 (268)
Q Consensus 76 ~aA~s~~~~~~g~~CG~C~~V~c~~-~~~C~~~-sv~V~VtD~Cp~~---------~C~~~~~~~DLs~~AF~~la~~~~ 144 (268)
+||+|+.+|++|++||+||||+|.+ +..|.++ +|+|+|||+||++ ||.+++.|||||.+||.+||..
T Consensus 1 taA~s~~lf~~G~~CG~Cy~v~C~~~~~~C~~~~~V~V~vtd~CP~~~~~~~~~~~~C~~~~~hfDLS~~AF~~iA~~-- 78 (87)
T smart00837 1 TAALSTALFNNGASCGACYEIMCVDSPKWCKPGGSITVTATNFCPPNYALSNDNGGWCNPPRKHFDLSQPAFEKIAQY-- 78 (87)
T ss_pred CcccCHHHccCCccccceEEEEeCCCCCcccCCCeEEEEEeccCCccccccccCCCccCCCCcCeEcCHHHHHHHhhh--
Confidence 4899999999999999999999974 4578764 9999999999973 7988889999999999999973
Q ss_pred ccccccCCeecEEE
Q 044280 145 SGELRNRGELPVIY 158 (268)
Q Consensus 145 ~~~~~~~G~~~I~w 158 (268)
+.|+|+|+|
T Consensus 79 -----~~Gvi~v~y 87 (87)
T smart00837 79 -----KAGIVPVKY 87 (87)
T ss_pred -----cCCEEeeEC
Confidence 799999987
No 9
>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures. They are classified in terms of two integral parameters: the number of strands in the sheet, n, and the shear number, S, a measure of the stagger of the strands in the beta-sheet. These two parameters have been shown to determine the major geometrical features of beta-barrels. Six-stranded beta-barrels with a pseudo-twofold axis are found in several proteins. One involving parallel strands forming two psi structures is known as the double-psi barrel. The first psi structure consists of the loop connecting strands beta1 and beta2 (a 'psi loop') and the strand beta5, whereas the second psi structure consists of the loop connecting strands beta4 and beta5 and the strand beta2. All the psi structures in double-psi barrels have a unique handedness, in that beta1 (beta4), beta2 (beta5) and the loop following beta5 (beta2) form a right-handed helix. The unique handedness may be related to the fact that the twisting angle between the parallel pair of strands is always larger than that between the antiparallel pair [].; PDB: 1N10_B 3D30_A 2BH0_A 2HCZ_X.
Probab=99.76 E-value=1.5e-18 Score=129.83 Aligned_cols=72 Identities=43% Similarity=0.891 Sum_probs=60.7
Q ss_pred EEEcChhhcCCCCCCCceEEEEeC--CCCC--ccC--CcEEEEEEccCCCCCCCCCCCceeeCHHHHhhhhhcCCccccc
Q 044280 76 VGAVSPVLFKNGGGCGACYKVRCL--DKSI--CSR--RAVTIIVTDECPGGYCSNGRTHFDLSGAAFGRMAIAGESGELR 149 (268)
Q Consensus 76 ~aA~s~~~~~~g~~CG~C~~V~c~--~~~~--C~~--~sv~V~VtD~Cp~~~C~~~~~~~DLs~~AF~~la~~~~~~~~~ 149 (268)
+||++..+|++|..||+||+++|. .... |.. ++|+|+|+|+||+ |.. +|||||+.||++|+.+
T Consensus 1 t~a~~~~~y~~g~~cG~~~~~~~~~~a~~~~~~~~~~ksV~v~V~D~Cp~--~~~--~~lDLS~~aF~~la~~------- 69 (78)
T PF03330_consen 1 TAAGSATWYDNGTACGQCYQVTCLTAASATGTCKVGNKSVTVTVVDRCPG--CPP--NHLDLSPAAFKALADP------- 69 (78)
T ss_dssp EEEE-HHHHGGGTTTT-EEEEEE---SSTT--BESEECEEEEEEEEE-TT--SSS--SEEEEEHHHHHHTBST-------
T ss_pred CeEEEhhhcCCCCcCCCeeeccccccCCccceEEecCCeEEEEEEccCCC--CcC--CEEEeCHHHHHHhCCC-------
Confidence 489999999999999999999993 2323 776 8999999999999 976 8999999999999974
Q ss_pred cCCeecEEE
Q 044280 150 NRGELPVIY 158 (268)
Q Consensus 150 ~~G~~~I~w 158 (268)
+.|+++|+|
T Consensus 70 ~~G~i~V~w 78 (78)
T PF03330_consen 70 DAGVIPVEW 78 (78)
T ss_dssp TCSSEEEEE
T ss_pred CceEEEEEC
Confidence 799999999
No 10
>PF00967 Barwin: Barwin family; InterPro: IPR001153 Barwin is a basic protein isolated from aqueous extracts of barley seeds. It is 125 amino acids in length, and contains six cysteine residues that combine to form three disulphide bridges [, ]. Comparative analysis shows the sequence to be highly similar to a 122 amino acid stretch in the C-terminal of the products of two wound-induced genes (win1 and win2) from potato, the product of the hevein gene of rubber trees, and pathogenesis-related protein 4 from tobacco. The high levels of similarity to these proteins, and their ability to bind saccharides, suggest that the barwin domain may be involved in a common defence mechanism in plants.; GO: 0042742 defense response to bacterium, 0050832 defense response to fungus; PDB: 1BW3_A 1BW4_A.
Probab=99.06 E-value=9.7e-11 Score=92.75 Aligned_cols=64 Identities=27% Similarity=0.547 Sum_probs=45.8
Q ss_pred CCCCCCceEEEEeCCCCCccCCcEEEEEEccCCCCCCCCCCCceeeCHHHHhhhhhcCCccccccCCeecEEEEEEee
Q 044280 86 NGGGCGACYKVRCLDKSICSRRAVTIIVTDECPGGYCSNGRTHFDLSGAAFGRMAIAGESGELRNRGELPVIYRRAPC 163 (268)
Q Consensus 86 ~g~~CG~C~~V~c~~~~~C~~~sv~V~VtD~Cp~~~C~~~~~~~DLs~~AF~~la~~~~~~~~~~~G~~~I~w~~V~C 163 (268)
+-..||+|++||.+. ++.+++|+|+|+|+. ++|||.+.+|++|-..| +-...|.+.|.|++|+|
T Consensus 56 gq~~CGkClrVTNt~----tga~~~~RIVDqCsn-------GGLDld~~vF~~iDtdG---~G~~~Ghl~V~y~fV~C 119 (119)
T PF00967_consen 56 GQDSCGKCLRVTNTA----TGAQVTVRIVDQCSN-------GGLDLDPTVFNQIDTDG---QGYAQGHLIVDYEFVDC 119 (119)
T ss_dssp SGGGTT-EEEEE-TT----T--EEEEEEEEE-SS-------SSEES-SSSHHHH-SSS---HHHHHTEEEEEEEEE--
T ss_pred CcccccceEEEEecC----CCcEEEEEEEEcCCC-------CCcccChhHHhhhccCC---cccccceEEEEEEEEcC
Confidence 346899999999874 366899999999997 58999999999996432 22468999999999999
No 11
>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family. It is produced by the Ascomycete Ceratocystis fimbriata f. sp. platani and causes the severe plant disease: canker stain. This protein occurs in the cell wall of the fungus and is involved in the host-plane interaction and induces both cell necrosis and phytoalexin synthesis which is one of the first plant defense-related events. CP, like other fungal surface proteins, is able to self assemble in vitro []. CP is a 120 amino acid protein, containing 40% hydrophobic residues and two S-S bridges. It contains four cysteine residues that form two disulphide bonds []. The N-terminal region of CP is very similar to cerato-ulmin, a phytotoxic protein produced by the Ophiostoma species belonging to the hydrophobin family, which also self-assembles []. This entry also includes other precursor proteins.; PDB: 2KQA_A 3M3G_A.
Probab=98.33 E-value=3.7e-06 Score=67.87 Aligned_cols=70 Identities=20% Similarity=0.469 Sum_probs=49.3
Q ss_pred CeEEEcCh-hhcCCCCCCCceEEEEeCCCCCccCCcEEEEEEccCCCCCCCCCCCceeeCHHHHhhhhhcCCccccccCC
Q 044280 74 ARVGAVSP-VLFKNGGGCGACYKVRCLDKSICSRRAVTIIVTDECPGGYCSNGRTHFDLSGAAFGRMAIAGESGELRNRG 152 (268)
Q Consensus 74 ~~~aA~s~-~~~~~g~~CG~C~~V~c~~~~~C~~~sv~V~VtD~Cp~~~C~~~~~~~DLs~~AF~~la~~~~~~~~~~~G 152 (268)
..|.+.+. .-| |+..||.|+|++.. +++|.|+.+|.-.+ .|+|+.+||+.|.+. ++ ...|
T Consensus 43 p~IGg~~~V~gW-nS~~CGtC~~lty~------g~si~vlaID~a~~--------gfnis~~A~n~LT~g-~a---~~lG 103 (119)
T PF07249_consen 43 PYIGGAPAVAGW-NSPNCGTCWKLTYN------GRSIYVLAIDHAGG--------GFNISLDAMNDLTNG-QA---VELG 103 (119)
T ss_dssp TSEEEETT--ST-T-TTTT-EEEEEET------TEEEEEEEEEE-SS--------SEEE-HHHHHHHHTS--C---CCC-
T ss_pred CeeccccccccC-CCCCCCCeEEEEEC------CeEEEEEEEecCCC--------cccchHHHHHHhcCC-cc---ccee
Confidence 34555554 346 56899999999994 77999999999553 699999999999874 22 3579
Q ss_pred eecEEEEEEe
Q 044280 153 ELPVIYRRAP 162 (268)
Q Consensus 153 ~~~I~w~~V~ 162 (268)
+|+++|+.|+
T Consensus 104 ~V~a~~~qV~ 113 (119)
T PF07249_consen 104 RVDATYTQVD 113 (119)
T ss_dssp EEE-EEEEE-
T ss_pred EEEEEEEEcC
Confidence 9999999996
No 12
>TIGR00413 rlpA rare lipoprotein A. This is a family of prokaryotic proteins with unknown function. Lipoprotein annotation based on the presence of consensus lipoprotein signal sequence. Included in this family is the E. coli putative lipoprotein rlpA.
Probab=97.45 E-value=0.0015 Score=57.39 Aligned_cols=96 Identities=24% Similarity=0.250 Sum_probs=69.1
Q ss_pred EEEEEcCCCCCCCCCcCCCCCCcCCCCCCCCCeEEEcChhhcCCCCCCCceEEEEeCCCCCccCCcEEEEEEccCCCCCC
Q 044280 43 ATATWYGSPEGDGSDGGACGYGSLVDVKPLRARVGAVSPVLFKNGGGCGACYKVRCLDKSICSRRAVTIIVTDECPGGYC 122 (268)
Q Consensus 43 g~aT~Yg~~~g~g~~~GaCGyg~~~~~~p~~~~~aA~s~~~~~~g~~CG~C~~V~c~~~~~C~~~sv~V~VtD~Cp~~~C 122 (268)
|.|+|||..-. -..-|.|- .+. ...+.||-.+ ...|..++|+... ++++|+|+|.|++|- =
T Consensus 1 G~ASwYg~~f~--G~~TAnGe--~y~---~~~~tAAHkt------LPlgT~V~VtNl~----ngrsviVrVnDRGPf--~ 61 (208)
T TIGR00413 1 GLASWYGPKFH--GRKTANGE--VYN---MKALTAAHKT------LPFNTYVKVTNLH----NNRSVIVRINDRGPF--S 61 (208)
T ss_pred CEEeEeCCCCC--CCcCCCCe--ecC---CCcccccccc------CCCCCEEEEEECC----CCCEEEEEEeCCCCC--C
Confidence 67999986311 01244543 111 1234555543 4789999999875 477999999999996 2
Q ss_pred CCCCCceeeCHHHHhhhhhcCCccccccCCeecEEEEEEeeCCC
Q 044280 123 SNGRTHFDLSGAAFGRMAIAGESGELRNRGELPVIYRRAPCKYP 166 (268)
Q Consensus 123 ~~~~~~~DLs~~AF~~la~~~~~~~~~~~G~~~I~w~~V~C~~~ 166 (268)
+..-+|||..|+.+|.- ...|..+|+.+.+.....
T Consensus 62 --~gRiIDLS~aAA~~Lg~-------~~~G~a~V~vevl~~~~~ 96 (208)
T TIGR00413 62 --DDRIIDLSHAAAREIGL-------ISRGVGQVRIEVLHVAKN 96 (208)
T ss_pred --CCCEEECCHHHHHHcCC-------CcCceEEEEEEEEecCCC
Confidence 23689999999999974 479999999999987653
No 13
>COG0797 RlpA Lipoproteins [Cell envelope biogenesis, outer membrane]
Probab=97.15 E-value=0.0015 Score=58.40 Aligned_cols=61 Identities=25% Similarity=0.288 Sum_probs=51.7
Q ss_pred CCCceEEEEeCCCCCccCCcEEEEEEccCCCCCCCCCCCceeeCHHHHhhhhhcCCccccccCCeecEEEEEEeeC
Q 044280 89 GCGACYKVRCLDKSICSRRAVTIIVTDECPGGYCSNGRTHFDLSGAAFGRMAIAGESGELRNRGELPVIYRRAPCK 164 (268)
Q Consensus 89 ~CG~C~~V~c~~~~~C~~~sv~V~VtD~Cp~~~C~~~~~~~DLs~~AF~~la~~~~~~~~~~~G~~~I~w~~V~C~ 164 (268)
.=|.-.+||..+ ++++|+|+|.|++| +..+ ..+|||..|+++|.- ...|+.+|..+.+.+.
T Consensus 118 P~~t~v~VtNl~----NgrsvvVRINDRGP---f~~g-RiIDlS~aAA~~l~~-------~~~G~a~V~i~~l~~~ 178 (233)
T COG0797 118 PLPTYVRVTNLD----NGRSVVVRINDRGP---FVSG-RIIDLSKAAADKLGM-------IRSGVAKVRIEVLGVA 178 (233)
T ss_pred CCCCEEEEEEcc----CCcEEEEEEeCCCC---CCCC-cEeEcCHHHHHHhCC-------ccCceEEEEEEEeccc
Confidence 346789999886 47799999999999 6654 589999999999985 4799999999999876
No 14
>PRK10672 rare lipoprotein A; Provisional
Probab=96.44 E-value=0.037 Score=52.64 Aligned_cols=93 Identities=22% Similarity=0.175 Sum_probs=62.2
Q ss_pred eEEEEEcCCCCCCCCCcCCCCCCcCCCCCCCCCeEEEcChhhcCCCCCCCceEEEEeCCCCCccCCcEEEEEEccCCCCC
Q 044280 42 PATATWYGSPEGDGSDGGACGYGSLVDVKPLRARVGAVSPVLFKNGGGCGACYKVRCLDKSICSRRAVTIIVTDECPGGY 121 (268)
Q Consensus 42 ~g~aT~Yg~~~g~g~~~GaCGyg~~~~~~p~~~~~aA~s~~~~~~g~~CG~C~~V~c~~~~~C~~~sv~V~VtD~Cp~~~ 121 (268)
.|.|+|||..-.. ..-|.|- .+. ...+.||-.+ ..-|..++||..+ ++++|+|+|.|++|-
T Consensus 80 ~G~ASwYg~~f~G--~~TA~Ge--~~~---~~~~tAAH~t------LPlps~vrVtNl~----ngrsvvVrVnDRGP~-- 140 (361)
T PRK10672 80 AGLAAIYDAEAGS--NLTASGE--RFD---PNALTAAHPT------LPIPSYVRVTNLA----NGRMIVVRINDRGPY-- 140 (361)
T ss_pred EEEEEEeCCccCC--CcCcCce--eec---CCcCeeeccC------CCCCCEEEEEECC----CCcEEEEEEeCCCCC--
Confidence 7899999864210 1223322 111 1234555543 4678899999886 477999999999996
Q ss_pred CCCCCCceeeCHHHHhhhhhcCCccccccCCeecEEEEEEe
Q 044280 122 CSNGRTHFDLSGAAFGRMAIAGESGELRNRGELPVIYRRAP 162 (268)
Q Consensus 122 C~~~~~~~DLs~~AF~~la~~~~~~~~~~~G~~~I~w~~V~ 162 (268)
= +..-+|||..|+++|.- ...+.+.|+.-.|.
T Consensus 141 ~--~gRiiDLS~aAA~~Lg~-------~~~~~V~ve~i~v~ 172 (361)
T PRK10672 141 G--PGRVIDLSRAAADRLNT-------SNNTKVRIDPIIVA 172 (361)
T ss_pred C--CCCeeEcCHHHHHHhCC-------CCCceEEEEEEeeC
Confidence 2 23689999999999974 24566777766663
No 15
>PF02015 Glyco_hydro_45: Glycosyl hydrolase family 45; InterPro: IPR000334 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 45 GH45 from CAZY comprises enzymes with only one known activity; endoglucanase (3.2.1.4 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases, cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produce a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family K or as the glycosyl hydrolases family 45 []. The best conserved regions in these enzymes is located in the N-terminal section. It contains an aspartic acid residue which has been shown [] to act as a nucleophile in the catalytic mechanism. This also has several cysteines that are involved in forming disulphide bridges.; GO: 0008810 cellulase activity, 0005975 carbohydrate metabolic process; PDB: 1OA7_A 1OA9_A 1L8F_A 1HD5_A 4ENG_A 3ENG_A 2ENG_A.
Probab=94.23 E-value=0.042 Score=48.16 Aligned_cols=54 Identities=22% Similarity=0.283 Sum_probs=32.7
Q ss_pred eEEEcChhhcCCCCCCCceEEEEeCCCCCccCCcEEEEEEccCCCCCCCCCCCceeeCH
Q 044280 75 RVGAVSPVLFKNGGGCGACYKVRCLDKSICSRRAVTIIVTDECPGGYCSNGRTHFDLSG 133 (268)
Q Consensus 75 ~~aA~s~~~~~~g~~CG~C~~V~c~~~~~C~~~sv~V~VtD~Cp~~~C~~~~~~~DLs~ 133 (268)
-+||.+-.-......|++||+++-++.+ -.+++.+|+|++.=-+ -..+||||..
T Consensus 69 GfaA~~~~G~~e~~~Cc~Cy~LtFt~g~-l~GKkmiVQ~tNtG~d----lg~n~FDl~i 122 (201)
T PF02015_consen 69 GFAAASITGGSESSWCCACYELTFTSGP-LKGKKMIVQVTNTGGD----LGSNQFDLAI 122 (201)
T ss_dssp EEEEEE-TT--HHHHTT-EEEEEE-SST-TTT-EEEEEEEEE-TT----TTTTEEEEE-
T ss_pred eeeeeeecCCCCCCcccceEEEEEcCCC-cCCCEeEEEecccCCC----CCCCeEEEEe
Confidence 3566653212233679999999998633 2567999999998554 2348999975
No 16
>PF03404 Mo-co_dimer: Mo-co oxidoreductase dimerisation domain; InterPro: IPR005066 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This domain is found in molybdopterin cofactor oxidoreductases, such as in the C-terminal of Mo-containing sulphite oxidase, which catalyses the conversion of sulphite to sulphate, the terminal step in the oxidative degradation of cysteine and methionine []. This domain is involved in dimer formation, and has an Ig-fold structure [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2C9X_A 2CA3_A 2BLF_A 2CA4_A 2BPB_A 2XTS_C 2BII_A 2BIH_A 1OGP_A 2A9A_B ....
Probab=74.81 E-value=8.2 Score=31.55 Aligned_cols=23 Identities=13% Similarity=0.498 Sum_probs=17.1
Q ss_pred CCC-CeeEEEEEecCCCCeEEccc
Q 044280 192 GDG-DVGSMHIREASSSEWLQMNH 214 (268)
Q Consensus 192 g~~-~I~sVei~~~g~~~w~~m~r 214 (268)
|.+ +|.+|||..+++.+|++...
T Consensus 38 g~g~~I~rVEVS~DgG~tW~~A~l 61 (131)
T PF03404_consen 38 GGGRGIARVEVSTDGGKTWQEATL 61 (131)
T ss_dssp STT--EEEEEEESSTTSSEEE-EE
T ss_pred CCCcceEEEEEEeCCCCCcEEeEe
Confidence 334 89999999998889987643
No 17
>cd02110 SO_family_Moco_dimer Subgroup of sulfite oxidase (SO) family molybdopterin binding domains that contains conserved dimerization domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO).
Probab=66.84 E-value=14 Score=34.58 Aligned_cols=52 Identities=13% Similarity=0.260 Sum_probs=32.6
Q ss_pred CCCCCeeEEEEEecCCCCeEEccccCC-------ceEEEcCCCCCc--ceEEEEEECcCCeE
Q 044280 191 DGDGDVGSMHIREASSSEWLQMNHVWG-------ANWSIIGGPLKG--PFSVKLATLSTGRT 243 (268)
Q Consensus 191 ~g~~~I~sVei~~~g~~~w~~m~r~~g-------n~W~~~~~~~~~--p~~lRiTs~~~G~~ 243 (268)
.|...|++|||..+++.+|++..-... -.|.+.-.+..+ -+.+|.++ .+|.+
T Consensus 233 ~g~~~I~rVEvS~DgG~tW~~A~l~~~~~~~~~W~~W~~~~~~~~G~~~l~vRA~D-~~g~~ 293 (317)
T cd02110 233 SGGRGIRRVEVSLDGGRTWQEARLEGPLAGPRAWRQWELDWDLPPGEYELVARATD-STGNV 293 (317)
T ss_pred cCCCCEEEEEEEeCCCCcceEeEccCCcCCCCEEEEEEEEEEcCCCcEEEEEEEEC-CCCCc
Confidence 344679999999998889987643211 145553122233 56677788 77743
No 18
>PF12863 DUF3821: Domain of unknown function (DUF3821); InterPro: IPR024277 This is a domain largely confined to sequences from Methanomicrobiales. It is found in putative lipases but the function is unknown.
Probab=49.89 E-value=97 Score=27.52 Aligned_cols=95 Identities=31% Similarity=0.376 Sum_probs=49.0
Q ss_pred CceeeCHHHHhhhhhcCCccccccCCeecEEEEEEeeCCCCcceEEEEccCCCCceEEEEEEeeCCCCCeeEEEEEecCC
Q 044280 127 THFDLSGAAFGRMAIAGESGELRNRGELPVIYRRAPCKYPGKNIAFHVNEGSTDYWLSLLVEFEDGDGDVGSMHIREASS 206 (268)
Q Consensus 127 ~~~DLs~~AF~~la~~~~~~~~~~~G~~~I~w~~V~C~~~g~ni~~~vk~Gss~~w~ai~v~n~~g~~~I~sVei~~~g~ 206 (268)
.+|.++|.+|..-.+ .|..-+=...+ .+.|.|++-+ ++|.|.+..-..+|..-.|....-
T Consensus 48 ~~FyV~P~~f~~~tG---------------~WY~~~~~~~~-~~aF~V~~Ps----l~l~v~d~~t~~dvt~~~V~~G~~ 107 (209)
T PF12863_consen 48 TNFYVSPAAFGGKTG---------------NWYQWNGTPKG-DVAFYVQDPS----LSLKVWDANTDKDVTGKTVPRGDN 107 (209)
T ss_pred cCEEEChHHhCCccc---------------ceEecCCCCCc-ceEEEEeCCc----eEEEEEeccccccccCceeccCCe
Confidence 489999999954332 13332222223 7888887643 777777655334443333322211
Q ss_pred CCeEEccccCCceEEEc---C-CCCCcceEEEEEECcCCeEEEE
Q 044280 207 SEWLQMNHVWGANWSII---G-GPLKGPFSVKLATLSTGRTLSA 246 (268)
Q Consensus 207 ~~w~~m~r~~gn~W~~~---~-~~~~~p~~lRiTs~~~G~~v~~ 246 (268)
-.|+- +.|.|.+. + ....++++|+|++ .+|.+...
T Consensus 108 v~FrI----~tNL~~~~~R~g~~~~~~~v~I~V~~-P~G~~~t~ 146 (209)
T PF12863_consen 108 VNFRI----DTNLYSIFQRGGYTPGDGPVDIKVTT-PSGATYTS 146 (209)
T ss_pred EEEEE----cccHHHHhhcCCCCCCcceEEEEEeC-CCCcEEEE
Confidence 11111 11222220 1 1223569999998 88876643
No 19
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=46.64 E-value=93 Score=25.36 Aligned_cols=68 Identities=12% Similarity=0.172 Sum_probs=40.7
Q ss_pred ceEEEEccC----CCCceEEEEEEeeCCCCCeeEEEEEecC----------CCCeEEccccCC--ceEEEcCCCCCcceE
Q 044280 169 NIAFHVNEG----STDYWLSLLVEFEDGDGDVGSMHIREAS----------SSEWLQMNHVWG--ANWSIIGGPLKGPFS 232 (268)
Q Consensus 169 ni~~~vk~G----ss~~w~ai~v~n~~g~~~I~sVei~~~g----------~~~w~~m~r~~g--n~W~~~~~~~~~p~~ 232 (268)
.+.+.+++- ..+||.-|.|.|.+|. ..++|+|.+.= ..+.--+.+..- ..+-...+|-++-+.
T Consensus 35 ~l~v~~~~~~r~~~gqyyVpF~V~N~gg~-TAasV~V~geL~~~~~v~E~~e~tiDfl~g~e~~~G~~IF~~dP~~g~L~ 113 (122)
T TIGR02588 35 VLEVAPAEVERMQTGQYYVPFAIHNLGGT-TAAAVNIRGELRQAGAVVENAEVTIDYLASGSKENGTLIFRSDPRNGQLR 113 (122)
T ss_pred eEEEeehheeEEeCCEEEEEEEEEeCCCc-EEEEEEEEEEEccCCceeEEeeEEEEEcCCCCeEeEEEEEccCcccCeEE
Confidence 566665432 2469999999998765 68999998641 112222333221 123223345677888
Q ss_pred EEEEE
Q 044280 233 VKLAT 237 (268)
Q Consensus 233 lRiTs 237 (268)
||+.+
T Consensus 114 irv~g 118 (122)
T TIGR02588 114 LRVAG 118 (122)
T ss_pred EEEEe
Confidence 88876
No 20
>cd02114 bact_SorA_Moco sulfite:cytochrome c oxidoreductase subunit A (SorA), molybdopterin binding domain. SorA is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SorB, a small c-type heme containing subunit, it forms a hetrodimer. It is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=43.58 E-value=63 Score=31.04 Aligned_cols=50 Identities=18% Similarity=0.443 Sum_probs=30.5
Q ss_pred CCCCeeEEEEEecCCCCeEEcc--ccCCc----eEEEcCCC-CCc--ceEEEEEECcCCe
Q 044280 192 GDGDVGSMHIREASSSEWLQMN--HVWGA----NWSIIGGP-LKG--PFSVKLATLSTGR 242 (268)
Q Consensus 192 g~~~I~sVei~~~g~~~w~~m~--r~~gn----~W~~~~~~-~~~--p~~lRiTs~~~G~ 242 (268)
|...|++|||..+++.+|+... ...+. .|++.=.+ ..+ -+..|-|+ .+|.
T Consensus 286 G~~~I~rVEVS~DgG~tW~~A~l~~~~~~~aW~~W~~~~~~~~~G~~~l~~RA~D-~~G~ 344 (367)
T cd02114 286 GGSGIRRVDVSADGGDSWTQATLGPDLGRFSFRGWKLTLDGVKKGPLTLMVRATN-NDGQ 344 (367)
T ss_pred CCCCEEEEEEEeCCCCcceEeEeCCCCCCcEEEEEEEEEECCCCCcEEEEEEEEc-CCCC
Confidence 4467999999999888998653 22222 35552112 134 45556677 6674
No 21
>cd02113 bact_SoxC_Moco bacterial SoxC is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. SoxC is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SoxD, a small c-type heme containing subunit, it forms a hetrotetrameric sulfite dehydrogenase. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=39.04 E-value=75 Score=30.05 Aligned_cols=51 Identities=10% Similarity=0.100 Sum_probs=30.3
Q ss_pred CCCCCeeEEEEEecCCCCeEEccc--cCC-c---eEEEcCCCCCc--ceEEEEEECcCCe
Q 044280 191 DGDGDVGSMHIREASSSEWLQMNH--VWG-A---NWSIIGGPLKG--PFSVKLATLSTGR 242 (268)
Q Consensus 191 ~g~~~I~sVei~~~g~~~w~~m~r--~~g-n---~W~~~~~~~~~--p~~lRiTs~~~G~ 242 (268)
.|.++|.+|||+.+++.+|+...- ..+ . .|.+.=.+..+ -+..|-|+ ..|+
T Consensus 235 sG~~~I~rVEVS~DgG~tW~~A~l~~~~~~~aW~~w~~~w~~~~g~~~i~~RA~D-~~G~ 293 (326)
T cd02113 235 SGRGRIRRVDVSFDGGRTWQDARLEGPVLPKALTRFRLPWKWDGRPAVLQSRATD-ETGY 293 (326)
T ss_pred CCCCCEEEEEEEcCCCCCceECccCCCCCCCceEEEeEEEEcCCCeEEEEEEEEc-CCCC
Confidence 345679999999998889987543 211 1 23331112233 45566677 6664
No 22
>PLN00177 sulfite oxidase; Provisional
Probab=37.48 E-value=74 Score=30.91 Aligned_cols=22 Identities=14% Similarity=0.459 Sum_probs=17.8
Q ss_pred CCCCeeEEEEEecCCCCeEEcc
Q 044280 192 GDGDVGSMHIREASSSEWLQMN 213 (268)
Q Consensus 192 g~~~I~sVei~~~g~~~w~~m~ 213 (268)
|..+|++|||..+++.+|+...
T Consensus 294 gg~~I~rVEVS~DgG~tW~~A~ 315 (393)
T PLN00177 294 GGRGIERVDISVDGGKTWVEAS 315 (393)
T ss_pred CCccEEEEEEEcCCCCCceeee
Confidence 3347999999999888998653
No 23
>TIGR02934 nifT_nitrog probable nitrogen fixation protein FixT. This largely uncharacterized protein family is assigned a role in nitrogen fixation by two criteria. First, its gene occurs, generally, among genes essential for expression of active nitrogenase. Second, its phylogenetic profile closely matches that of nitrogen-fixing bacteria. However, mutational studies in Klebsiella pneumoniae failed to demonstrate any phenotype for deletion or overexpression of the protein.
Probab=34.02 E-value=1.9e+02 Score=21.13 Aligned_cols=51 Identities=20% Similarity=0.321 Sum_probs=30.4
Q ss_pred EEEEEEeeCCCCCeeEEEEEecCCCCeEEccccCCceEEEcC--CCCCcceEEEEE
Q 044280 183 LSLLVEFEDGDGDVGSMHIREASSSEWLQMNHVWGANWSIIG--GPLKGPFSVKLA 236 (268)
Q Consensus 183 ~ai~v~n~~g~~~I~sVei~~~g~~~w~~m~r~~gn~W~~~~--~~~~~p~~lRiT 236 (268)
+.+.|.--.=..+|.++| +....+.|..|.+.| .|.+.. .....|+++|..
T Consensus 13 l~~YvpKKDLEE~Vv~~e-~~~~WGG~v~L~NGw--~l~lp~l~~~~~LPiTveAk 65 (67)
T TIGR02934 13 LSAYVPKKDLEEVIVSVE-KEELWGGWVTLANGW--RLELPEIPDDTRLPITVEAK 65 (67)
T ss_pred EEEEEECCcchhheeeee-cCccccCEEEECCcc--EEEeCCCCCCCCCCEEEEEE
Confidence 455555333336788888 333346778886643 566642 334679998864
No 24
>cd02111 eukary_SO_Moco molybdopterin binding domain of sulfite oxidase (SO). SO catalyzes the terminal reaction in the oxidative degradation of the sulfur-containing amino acids cysteine and methionine. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=31.65 E-value=1.3e+02 Score=28.85 Aligned_cols=23 Identities=9% Similarity=0.277 Sum_probs=18.5
Q ss_pred CCCCCeeEEEEEecCCCCeEEcc
Q 044280 191 DGDGDVGSMHIREASSSEWLQMN 213 (268)
Q Consensus 191 ~g~~~I~sVei~~~g~~~w~~m~ 213 (268)
+|..+|++|||..+++.+|+...
T Consensus 273 gg~~~I~rVEVS~DgG~tW~~A~ 295 (365)
T cd02111 273 GGGRKIVRVDVSLDGGRTWKVAE 295 (365)
T ss_pred CCCCcEEEEEEECCCCCcceeCC
Confidence 33457999999999888998754
No 25
>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]
Probab=31.25 E-value=74 Score=26.11 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=23.0
Q ss_pred ccCCeecEEEEEEeeCC---CCcceEEEEcc
Q 044280 149 RNRGELPVIYRRAPCKY---PGKNIAFHVNE 176 (268)
Q Consensus 149 ~~~G~~~I~w~~V~C~~---~g~ni~~~vk~ 176 (268)
+..|.+.++||.|+=+- .| .|.|.|+.
T Consensus 97 L~aG~Y~v~WrvvS~DGH~v~G-~~sFsV~~ 126 (127)
T COG2372 97 LKAGVYTVDWRVVSSDGHVVKG-SISFSVGA 126 (127)
T ss_pred CCCCcEEEEEEEEecCCcEecc-EEEEEecC
Confidence 67999999999999984 56 89998863
No 26
>PF04620 FlaA: Flagellar filament outer layer protein Flaa; InterPro: IPR006714 Periplasmic flagella are the organelles of spirochete mobility, and are structurally different from the flagella of other motile bacteria. They reside inside the cell within the periplasmic space, and confer mobility in viscous gel-like media such as connective tissue []. The flagella are composed of an outer sheath of FlaA proteins and a core filament of FlaB proteins. Each species usually has several FlaA protein species [].; GO: 0001539 ciliary or flagellar motility, 0030288 outer membrane-bounded periplasmic space
Probab=27.25 E-value=1.6e+02 Score=26.20 Aligned_cols=43 Identities=19% Similarity=0.412 Sum_probs=34.3
Q ss_pred ceEEEEccCCCCceEEEEEEeeCCCCCeeEEEEEecCCCCeEEcc
Q 044280 169 NIAFHVNEGSTDYWLSLLVEFEDGDGDVGSMHIREASSSEWLQMN 213 (268)
Q Consensus 169 ni~~~vk~Gss~~w~ai~v~n~~g~~~I~sVei~~~g~~~w~~m~ 213 (268)
.|.+.|-.-.++++|.+++++.. +.+..+.+-.-+-..|+.|.
T Consensus 109 ~I~vWV~G~n~~h~L~v~lrD~~--G~~~~l~~G~L~f~GWK~L~ 151 (217)
T PF04620_consen 109 SISVWVYGDNYPHWLEVLLRDAK--GEVHQLPLGSLNFDGWKNLT 151 (217)
T ss_pred EEEEEEECCCCCceEEEEEEcCC--CCEEEEEeeeecCCceeEEE
Confidence 78888875557999999999999 55788887655557898884
No 27
>PRK10301 hypothetical protein; Provisional
Probab=27.22 E-value=93 Score=25.08 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=21.1
Q ss_pred ccCCeecEEEEEEeeCC---CCcceEEEEc
Q 044280 149 RNRGELPVIYRRAPCKY---PGKNIAFHVN 175 (268)
Q Consensus 149 ~~~G~~~I~w~~V~C~~---~g~ni~~~vk 175 (268)
+..|.+.|+||-|+=+- .| .+.|.||
T Consensus 96 L~~G~YtV~Wrvvs~DGH~~~G-~~~F~V~ 124 (124)
T PRK10301 96 LKPGTYTVDWHVVSVDGHKTKG-HYTFSVK 124 (124)
T ss_pred CCCccEEEEEEEEecCCCccCC-eEEEEEC
Confidence 46899999999999863 56 7888774
No 28
>cd02112 eukary_NR_Moco molybdopterin binding domain of eukaryotic nitrate reductase (NR). Assimilatory NRs catalyze the reduction of nitrate to nitrite which is subsequently converted to NH4+ by nitrite reductase. Eukaryotic assimilatory nitrate reductases are cytosolic homodimeric enzymes with three prosthetic groups, flavin adenine dinucleotide (FAD), cytochrome b557, and Mo cofactor, which are located in three functional domains. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=25.42 E-value=1.5e+02 Score=28.73 Aligned_cols=20 Identities=10% Similarity=0.244 Sum_probs=17.1
Q ss_pred CCeeEEEEEecCCCCeEEcc
Q 044280 194 GDVGSMHIREASSSEWLQMN 213 (268)
Q Consensus 194 ~~I~sVei~~~g~~~w~~m~ 213 (268)
.+|++|||..+++.+|+...
T Consensus 300 ~~I~rVeVS~DgG~tW~~A~ 319 (386)
T cd02112 300 RRVTRVEVSLDDGKSWKLAS 319 (386)
T ss_pred CcEEEEEEEcCCCCCceeCC
Confidence 37999999999888998753
No 29
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=24.58 E-value=2.1e+02 Score=21.96 Aligned_cols=48 Identities=13% Similarity=0.204 Sum_probs=31.3
Q ss_pred eeEEEEEecCCCCeE----EccccCCceEEEc-CCC--------CCcceEEEEEECcCCeEEE
Q 044280 196 VGSMHIREASSSEWL----QMNHVWGANWSII-GGP--------LKGPFSVKLATLSTGRTLS 245 (268)
Q Consensus 196 I~sVei~~~g~~~w~----~m~r~~gn~W~~~-~~~--------~~~p~~lRiTs~~~G~~v~ 245 (268)
-++|+|.++ -..|. +|.|...-.|++. ... -...+.+||+. .+|+++.
T Consensus 16 A~~V~l~Gd-Fn~W~~~~~~m~k~~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~-~~G~~~~ 76 (99)
T cd02854 16 AEEVYLIGD-FNNWDRNAHPLKKDEFGVWEITIPPNEDGSPAIPHGSKIKVRMVT-PSGEWID 76 (99)
T ss_pred CCEEEEEcc-CCCCCCcCcccEECCCCEEEEEECCcccccccCCCCCEEEEEEEe-CCCCEEE
Confidence 467777654 24564 4887655699873 221 23589999998 7888764
No 30
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=24.49 E-value=3.5e+02 Score=22.06 Aligned_cols=19 Identities=21% Similarity=0.359 Sum_probs=12.2
Q ss_pred EEEecCCCCeEEccccCCceEEE
Q 044280 200 HIREASSSEWLQMNHVWGANWSI 222 (268)
Q Consensus 200 ei~~~g~~~w~~m~r~~gn~W~~ 222 (268)
.|+..+...|+-|.| +|.+
T Consensus 35 tI~N~g~~~vqLlsR----~W~I 53 (126)
T COG2967 35 TIRNLGEVPVQLLSR----YWLI 53 (126)
T ss_pred EEecCCCccceeeee----EEEE
Confidence 555555567777777 5665
No 31
>PF06988 NifT: NifT/FixU protein; InterPro: IPR009727 This family consists of several NifT and FixU bacterial proteins. The function of NifT is unknown although it is thought that the protein may be involved in biosynthesis of the FeMo cofactor of nitrogenase although perturbation of nifT expression in Klebsiella pneumoniae has only a limited effect on nitrogen fixation [].; GO: 0009399 nitrogen fixation; PDB: 2JN4_A.
Probab=24.10 E-value=77 Score=22.92 Aligned_cols=37 Identities=16% Similarity=0.211 Sum_probs=17.0
Q ss_pred CeeEEEEEecCCCCeEEccccCCceEEEcC--CCCCcceEEE
Q 044280 195 DVGSMHIREASSSEWLQMNHVWGANWSIIG--GPLKGPFSVK 234 (268)
Q Consensus 195 ~I~sVei~~~g~~~w~~m~r~~gn~W~~~~--~~~~~p~~lR 234 (268)
+|.++| +....+.|..|.+.| .|.+.. .....|+++|
T Consensus 25 ~Vv~~E-~~~~wGG~v~L~NGw--~l~lp~~~~~~~lPiTve 63 (64)
T PF06988_consen 25 PVVSME-KPELWGGEVTLANGW--ELYLPPLPADTRLPITVE 63 (64)
T ss_dssp EEEEES-SSSS-SSEEEETTS---EEE----SSS-SS-EEE-
T ss_pred ceeeee-ccCccCCEEEECCcC--EEEeCCCCCCCCCCeEee
Confidence 344444 333346677886644 676642 3346788886
No 32
>KOG4192 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.68 E-value=3.5e+02 Score=22.18 Aligned_cols=106 Identities=24% Similarity=0.343 Sum_probs=66.8
Q ss_pred CCCCCCc-eEEEEeCCCCCccCCcEEEEEEccCCCCCCC-CCCCceeeCHHHHhhhhhcCCccccccCCeecEEEE----
Q 044280 86 NGGGCGA-CYKVRCLDKSICSRRAVTIIVTDECPGGYCS-NGRTHFDLSGAAFGRMAIAGESGELRNRGELPVIYR---- 159 (268)
Q Consensus 86 ~g~~CG~-C~~V~c~~~~~C~~~sv~V~VtD~Cp~~~C~-~~~~~~DLs~~AF~~la~~~~~~~~~~~G~~~I~w~---- 159 (268)
+|-.||+ -++|+.+ -++.+.| |.+..|. ...-||.+...-|..|.+ -..-.+|+
T Consensus 10 GgCHCGaVkw~v~ap---------~~l~~~~-Cncrics~k~~~hfivpas~f~ll~g----------~efitty~~gth 69 (134)
T KOG4192|consen 10 GGCHCGAVKWSVWAP---------ADLDGCD-CNCRICSKKQNRHFIVPASRFVLLVG----------AEFITTYTFGTH 69 (134)
T ss_pred CCcccceEEEEEecc---------cceEEee-ccchhhhhccceEEEEeccceEEEeC----------cceEEEEEeccc
Confidence 4556777 4666653 2333333 3322375 345689998888877753 12334444
Q ss_pred ---EEeeCCCCcceEEEEccCCCCceEEEEEEeeCCCCCeeEEEEEecCCCCeEEccc
Q 044280 160 ---RAPCKYPGKNIAFHVNEGSTDYWLSLLVEFEDGDGDVGSMHIREASSSEWLQMNH 214 (268)
Q Consensus 160 ---~V~C~~~g~ni~~~vk~Gss~~w~ai~v~n~~g~~~I~sVei~~~g~~~w~~m~r 214 (268)
-+.|..-| --.|+. .-|++|=.+|.+.=.++ +.+++|++..-++++|..+..
T Consensus 70 ~aqhtfck~cG-V~sf~~-~rs~p~~~~i~phCld~-gTlr~v~~~~fnGqdwe~~~e 124 (134)
T KOG4192|consen 70 QAQHTFCKRCG-VQSFYS-PRSNPYGKGIAPHCLDE-GTLRSVVWEEFNGQDWEATME 124 (134)
T ss_pred hhheeeecccc-ceeccc-cccCCCceeecceeecC-CceeEEEEEEecCcchhHhhh
Confidence 36677666 333443 35889989999886653 569999999988888876543
Done!