BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044284
         (421 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
           The Archetypal Small Leucine-Rich Repeat Proteoglycan
          Length = 330

 Score = 31.6 bits (70), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 20/41 (48%)

Query: 67  GISEELIEQQQHDIHAMEVFLPFRCYCTRRHIQCELVVLER 107
           GI  E    +  +I  M    PFRC C  R +QC  + LE+
Sbjct: 5   GIGPEEHFPEVPEIEPMGPVCPFRCQCHLRVVQCSDLGLEK 45


>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
 pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
 pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
          Length = 329

 Score = 31.6 bits (70), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 20/41 (48%)

Query: 67  GISEELIEQQQHDIHAMEVFLPFRCYCTRRHIQCELVVLER 107
           GI  E    +  +I  M    PFRC C  R +QC  + LE+
Sbjct: 5   GIGPEEHFPEVPEIEPMGPVCPFRCQCHLRVVQCSDLGLEK 45


>pdb|1GV0|A Chain A, Structural Basis For Thermophilic Protein Stability:
           Structures Of Thermophilic And Mesophilic Malate
           Dehydrogenases
 pdb|1GV0|B Chain B, Structural Basis For Thermophilic Protein Stability:
           Structures Of Thermophilic And Mesophilic Malate
           Dehydrogenases
          Length = 310

 Score = 28.1 bits (61), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 12/36 (33%), Positives = 19/36 (52%)

Query: 100 CELVVLERQDVARALIEYVSQYGVETMLLGAPTKNG 135
            E +VL+R+ V    +    QYG++   +G P K G
Sbjct: 236 VESIVLDRKRVLTCAVSLDGQYGIDGTFVGVPVKLG 271


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.131    0.383 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,920,928
Number of Sequences: 62578
Number of extensions: 278318
Number of successful extensions: 834
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 828
Number of HSP's gapped (non-prelim): 7
length of query: 421
length of database: 14,973,337
effective HSP length: 101
effective length of query: 320
effective length of database: 8,652,959
effective search space: 2768946880
effective search space used: 2768946880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)