BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044284
(421 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FKG6|PUB52_ARATH U-box domain-containing protein 52 OS=Arabidopsis thaliana GN=PUB52
PE=2 SV=1
Length = 845
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 110/455 (24%), Positives = 197/455 (43%), Gaps = 97/455 (21%)
Query: 21 VAVAIDKDKFSQHALKWAADNILSRHQT-IKLVHV---IQKSHSNNQYSVGISE---ELI 73
VAVAI+ K S++ + WA + + T KL++V + + +V +SE +++
Sbjct: 24 VAVAINGKKKSKYVVFWALEKFIPEGFTDFKLLYVRPPVSYIPTPMGIAVAVSELREDVV 83
Query: 74 E--QQQHDIHAMEVFLPFRCYCTRRHIQCELVVLERQDVARALIEYVSQYGVETMLLGAP 131
+Q+ D A E+ P++ RR +Q E+++L+ + A A+ E ++ GV +++G
Sbjct: 84 SAYKQELDWSANEMLRPYKKMFERRKVQVEVLLLDSLEPAAAIAEEIAGTGVTKLVIGMS 143
Query: 132 TKNGLSRSSFCRLFKASDTPGTVLKWAPDFCNVYIVSKGKCHALRSA------------- 178
+ SR D + P FC VY++SKGK ++R +
Sbjct: 144 LRGFFSRKI--------DMSSLIATAVPRFCTVYVISKGKLASVRPSESDASGSIRFERS 195
Query: 179 -----TRPVPPVPTE----------------PLTPRTRLLAEAAANAIRNYD-------- 209
+ P +P E P +P L +NA+ D
Sbjct: 196 SSTSGSTDSPRLPPEYQDFLSAVSEAQSRVSPFSP--ALKHSMGSNAVAQMDTSSSGTDQ 253
Query: 210 -EFSTAE-MELTLSN-SGRLSTESNF-FSF------YESLGLNMEGKSFDSPRASRGS-- 257
E ST ME+ S G+ + + +F SF Y S+ + + + R R S
Sbjct: 254 EEVSTGRGMEIVHSGIEGKKNKDESFSASFPMGTEAYNSMSWTSKWRDHEDRREMRSSSS 313
Query: 258 ------INL---TSLPELPS-ISNDSSGTSSSSQNMEDVEDD-------VKRLKMELKQT 300
+N+ +PE S +S+ +S S ++ + D+ +++L+ ELK
Sbjct: 314 SNNHDLVNMDWGAVVPENYSWVSHTASHMSDGLLSVHSITDNQVNLNFEIEKLRAELKHV 373
Query: 301 MDMYNAACKEALAAKQKAVELEKWKMKEEKRLKETQMGEE-------RGKAKIKAAIEAA 353
+MY A E + A +K EL + + +E ++L E + EE + K + + A++ A
Sbjct: 374 QEMYAMAQTETVGASKKLTELNQRRFEESEKLVELKEKEEVAKDTASKEKQRYEEAMKEA 433
Query: 354 EAAQKIAKLEVQKRVNAEAKALKEAEEKRKLLDAL 388
E +++ E R AE KA ++A EK KL +L
Sbjct: 434 EKVKELMMKEALHRREAEFKAERDAREKDKLQASL 468
>sp|Q9FKG5|PUB51_ARATH U-box domain-containing protein 51 OS=Arabidopsis thaliana GN=PUB51
PE=2 SV=2
Length = 796
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 79/161 (49%), Gaps = 7/161 (4%)
Query: 20 IVAVAI-DKDKFSQHALKWAADNILSR-HQTIKLVHVIQKSHSNNQYSVGISEELIEQQQ 77
IVAVAI + ++ ++WA S+ H KL+HV + ++ + + ++
Sbjct: 7 IVAVAIKGNNSKTKGVVRWALQEFASQEHVVFKLLHVQPRDSNSVSTTRKDLTTSVYKKD 66
Query: 78 HDIHAMEVFLPFRCYCTRRHIQCELVVLERQDVARALIEYVSQYGVETMLLGAPTKNGLS 137
D E+ LP R R +Q +++VLE D+A A+ + V +G+ +++GA S
Sbjct: 67 VDRKTREMLLPSRDMFVHREVQLDIMVLESDDIADAISKAVQDHGISELVIGAS-----S 121
Query: 138 RSSFCRLFKASDTPGTVLKWAPDFCNVYIVSKGKCHALRSA 178
F K S+ + P FC+V+++SKGK +R +
Sbjct: 122 SIIFSWKLKRSNLSSRIADATPRFCSVHVISKGKLLNVRKS 162
Score = 55.5 bits (132), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 73/135 (54%), Gaps = 9/135 (6%)
Query: 261 TSLPELPSISNDSSGTSSSSQNMEDVEDDVKRLKMELKQTMDMYNAACKEALAAKQKAVE 320
+ + E S S S TSSSSQ +D E +++LK+EL+ MY A E + A +K +
Sbjct: 272 SQMEEASSSSTYSDPTSSSSQIHKDFE--LEKLKIELRHIKGMYAVAQSEVIDASKKMQD 329
Query: 321 LEKWKMKEEKRLKETQMGEERGKAKIKAAIEAAEAAQKIAKL-------EVQKRVNAEAK 373
L + + +E RLK + EE ++ E E A+ A+L E ++R+ AEA+
Sbjct: 330 LNQRRSEEATRLKNLTIREEEADEVVEMERERQEDAENEAELVRECIERETEERLEAEAR 389
Query: 374 ALKEAEEKRKLLDAL 388
A + +EK++L DAL
Sbjct: 390 AEEVRKEKQRLEDAL 404
>sp|Q9SW11|PUB35_ARATH U-box domain-containing protein 35 OS=Arabidopsis thaliana GN=PUB35
PE=1 SV=2
Length = 835
Score = 62.4 bits (150), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 83/167 (49%), Gaps = 17/167 (10%)
Query: 19 KIVAVAIDKDKFSQHALKWAADNILSRHQT-IKLVHV---IQKSHSNNQYSVGISE---E 71
+ V VA+ S++ + WA + + KL+H+ I + ++ ISE +
Sbjct: 20 RTVVVALSGSSKSKYVVTWAIEKFATEGNVGFKLLHIHPMITSVPTPMGNAIPISEVRDD 79
Query: 72 LIEQQQHDI--HAMEVFLPFRCYCTRRHIQCELVVLERQDVARALIEYVSQYGVETMLLG 129
++ + +I + E+ P+ RR + E++V+E +VA A+ E V++ ++ +++G
Sbjct: 80 VVTAYRQEILWQSEEMLKPYTKLFVRRKVAVEVLVIESDNVAAAIAEEVTRDSIDRIVIG 139
Query: 130 APTKNGLSRSSFCRLFKASDTPGTVLKWAPDFCNVYIVSKGKCHALR 176
G SRS F R +D + P+FC VY+VSKGK +R
Sbjct: 140 -----GSSRSFFSR---KADICSVISALMPNFCTVYVVSKGKLSCVR 178
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 95/200 (47%), Gaps = 27/200 (13%)
Query: 206 RNYDEFSTAEMELTLSNSGRLSTESNFFSFYESLGLNMEGKSFDSPRASRGSINLTSLPE 265
R+Y+E A +S+S NF + + G+ G RAS+ + N++
Sbjct: 287 RDYEERKEA-----MSSSSSNREYGNFGTRFSWSGM---GVDTTHSRASQQASNMS---- 334
Query: 266 LPSISNDSSGTSSSSQNMEDVEDDVKRLKMELKQTMDMYNAACKEALAAKQKAVELEKWK 325
D+ S + N ++ +V++L+ EL+ +MY A E A +K EL + +
Sbjct: 335 ------DALSEQSYTDNQVNLNFEVEKLRAELRHVQEMYAVAQTETFDASRKLGELNQRR 388
Query: 326 MKEEKRLKETQMGE-------ERGKAKIKAAIEAAEAAQKIAKLEVQKRVNAEAKALKEA 378
++E +L+E ++ E E+ K + A AE+ ++ A+ E+ +R AE K+ ++
Sbjct: 389 LEEAIKLEELKLKEYEARELAEKEKQNFEKARRDAESMRERAEREIAQRREAERKSARDT 448
Query: 379 EEKRKLLDALWQSHMVLKYQ 398
+EK KL L L+YQ
Sbjct: 449 KEKEKLEGTLGSPQ--LQYQ 466
>sp|Q9LU47|PUB53_ARATH Putative U-box domain-containing protein 53 OS=Arabidopsis thaliana
GN=PUB53 PE=3 SV=1
Length = 819
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 105/416 (25%), Positives = 163/416 (39%), Gaps = 80/416 (19%)
Query: 21 VAVAIDKDKFSQHALKWAADNILS-RHQTIKLVHVIQKSHSNNQYS---VGISEELIE-- 74
VA+AI S++ +KWA + S ++ T KL+H+ K + S V ISEEL E
Sbjct: 34 VALAISGSIKSKNVIKWALNKFGSDKNVTFKLIHIHPKITTLPTASGNIVSISEELEEVA 93
Query: 75 ---QQQHDIHAMEVFL-PFRCYCTRRHIQ--------------CELVVLERQDVARALIE 116
+Q+ E L PF+ C R+ ++ EL VLE VA A+ +
Sbjct: 94 AAYRQKVMQETKETLLKPFKKMCERKKLKIDETRFESSLTKVAVELQVLESNSVAVAITK 153
Query: 117 YVSQYGVETMLLGAPTKNGLSRSSFCRLFKASDTPGTVLKWAPDFCNVYIVSKGKCHALR 176
V+Q+ + +++G ++ SR+ D ++ + C VY+VS G H L
Sbjct: 154 EVNQHLISNLIIGRSSQAASSRNY--------DITASISASVSNLCTVYVVSNGGVHILA 205
Query: 177 SATRPVPPVPTEPLTPRTRLLAEAAANAIRNYDEFSTAEMELTLSNSGRLSTE--SNFFS 234
T T + R + ++ + N D S A SN LS + N +
Sbjct: 206 KDTSDTERNDTSIESGFERTSSSCSSGSGANSDVMSNA----LKSNPHTLSNKRMQNLPT 261
Query: 235 FYESLGLNMEGKSFDSPR-----------ASRGSINLTSL-----PELPSISNDSSGTSS 278
+ + ME S +S AS+ S TS P+ SS
Sbjct: 262 IVRGVSVPMETSSTESDETKKRSSDAAEEASKRSSPETSRSVSWNPQFRDFDERKDAMSS 321
Query: 279 SSQNME----------------DVEDDVKRLKMELKQTMDMYNAACKEALAAKQKAVELE 322
S N E D +++ +L+ EL+ +MY A E L A +K EL
Sbjct: 322 MSSNFEYGNVVTPLGHYFTDNQDTLNEISKLRAELRHAHEMYAVAQVETLDASRKLNEL- 380
Query: 323 KWKMKEEKRLKETQMGEERGKAKIKAAIEAAEAAQKIAKLEVQKRVNAEAKALKEA 378
+ +E + E K K E E ++ + Q+R AE KA EA
Sbjct: 381 --------KFEELTLLEHETKGIAKKETEKFEQKRREEREAAQRR-EAEMKATHEA 427
>sp|Q8S8S7|PUB34_ARATH U-box domain-containing protein 34 OS=Arabidopsis thaliana GN=PUB34
PE=3 SV=1
Length = 801
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 105/432 (24%), Positives = 172/432 (39%), Gaps = 78/432 (18%)
Query: 20 IVAVAIDK---DKF----SQHALKWAADNILSRHQTIKLVHVIQKSHS-----------N 61
VAVA+ DK S+ A++WA DN+L + ++HVI S
Sbjct: 23 FVAVAVKGLIGDKLGGAGSRRAVRWAVDNLLPKADKFVMIHVIPTITSIPTPNILILMFT 82
Query: 62 NQYSVGISEEL---------IEQQQHDIHA--MEVFLPFRCYC-----TRRHIQCELVVL 105
+ V + L +E D+ VF+PF C T+R+ +
Sbjct: 83 RMWVVTAGDRLPVEEVEESVVEMYVRDVKKEYETVFVPFLKMCKSTRSTKRYFR------ 136
Query: 106 ERQDVARALIEYVSQYGVETMLLGAPTKNGLSRSSF--------CRLFKASDTPGTVLK- 156
R+ + V +Y ET + K+ ++ S C A+ T L+
Sbjct: 137 SRRTKGTGVPLTVLRYAPETCEVYIVCKDRITTKSMDPLINREPCTSPHAAATAHDFLRD 196
Query: 157 WAPDFCNVYIVSKGKCHALRSATRPVPPVPTEPLTPRTRLLAEAAANAIRNYDEFSTAEM 216
WA F H LRS T P P TE T R+ A+A +R ++ S
Sbjct: 197 WAASF-----------HTLRSPTLPDPRQSTEAGTRRS-----ASARELR-FEALSLTCN 239
Query: 217 ELTLSNSGRLSTESNFFSFYESLGLN---MEGKSFDSPRASRGSINLTSLPELPSISNDS 273
+ S + S+ + F G + + FD ++ N+ ++ S+ S
Sbjct: 240 KPKTPQSSKASSATTPEIFRRRRGSDIPQLNYSDFDK-TCTKPQSNVENIVSEHRDSDRS 298
Query: 274 SGTSSSSQNMEDVEDDVKRLKMELKQTMDMYNAACKEALAAKQKAVELEKWKMKEEKRLK 333
+S ++E++V+RLK EL+ T+ Y AC+E + + K L + E KR+
Sbjct: 299 PPETSRKSKKVEIEEEVERLKNELQSTVFKYKQACEELFSTQNKVKMLSTEYLNESKRVN 358
Query: 334 ETQMGEE--RGKAKIK-----AAIEAAEAAQKIAKLEVQKRVNAEAKALKEAEEKRKLLD 386
EE R A ++ A++ E A+ + E +R AE AL+ EK+K++D
Sbjct: 359 NAVEKEELQRNTAALEKERYMKAVKEVETAKALLAREFCQRQIAEVNALRTYLEKKKVID 418
Query: 387 ALWQS-HMVLKY 397
L + H KY
Sbjct: 419 QLLGTDHRYRKY 430
>sp|Q8GZ84|PUB36_ARATH U-box domain-containing protein 36 OS=Arabidopsis thaliana GN=PUB36
PE=2 SV=2
Length = 435
Score = 40.4 bits (93), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 68/157 (43%), Gaps = 15/157 (9%)
Query: 17 REKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQ 76
+EKI +KD S+ +L WA N S + +VHV Q + + L ++
Sbjct: 33 KEKIYVAVTEKDLESKSSLVWAIQN--SGGKEFCIVHVHQPIPGEMFHEQKLR--LYRKE 88
Query: 77 QHDIHA-MEVFLPFRCYCTRRHIQCELVVLERQDVARALIEYVSQYGVETMLLGAPTKNG 135
+ H E +L C + + E++ +E V + +++ +SQ GV +++GA
Sbjct: 89 KDKAHKNSEKYLQI---CRQMQVTAEIIYIETDSVEKGILQLISQRGVTKLVMGAAADRH 145
Query: 136 LSR-----SSFCRLFKASDTPGTVLKWAPDFCNVYIV 167
S S ++ + P T L W CN Y++
Sbjct: 146 YSMRMRDLKSKKAIYIHREAPATCLIWFT--CNGYLI 180
>sp|Q5XF57|Y5576_ARATH Probable receptor-like serine/threonine-protein kinase At5g57670
OS=Arabidopsis thaliana GN=At5g57670 PE=2 SV=1
Length = 579
Score = 38.5 bits (88), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 69/156 (44%), Gaps = 14/156 (8%)
Query: 15 EGREKI-VAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELI 73
EG KI VA+++D+D+ SQ+ L WA + + T+ +H++ + + ++
Sbjct: 7 EGSNKILVAISLDRDE-SQNVLSWAINVLAKPSDTVVALHLLVGEEPRK---LPMKKKKR 62
Query: 74 EQQQH-DIHAMEVFLPFRCYCTRRHIQCELVVLERQDVARALIEYVSQYGVETMLLGAPT 132
Q +H H + + F C + E V ++ R LI+ V ++L PT
Sbjct: 63 TQIRHAKAHVISMLGEFAYTCCHNQVNLEAKVGFSSNIGRGLIDEVKSISAHYLVLSRPT 122
Query: 133 KNGLSRSSFCRLFKASDTPGTVLKWAPDFCNVYIVS 168
+ R++ +D V +AP C+V +V
Sbjct: 123 THEF------RIW--NDIKRYVSDFAPSSCSVVLVG 150
>sp|A8LKE7|PNP_DINSH Polyribonucleotide nucleotidyltransferase OS=Dinoroseobacter shibae
(strain DFL 12) GN=pnp PE=3 SV=1
Length = 711
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 4/106 (3%)
Query: 253 ASRGSINLTSLPELPSISNDSSGTSSSSQNMEDVEDDVKRLKMELKQTMDMYNAACKEAL 312
A+ ++ ++ +P + I+ G + V DD+ L+ Q +D+ A K+A+
Sbjct: 133 AASAALTISGVPFMGPIAGARVGYEDGEYVLNPVVDDMHDLRNNPDQRLDLVVAGTKDAV 192
Query: 313 AAKQKAVELEKWKMKEEKRLKETQMGEERGKAKIKAAIEAAEAAQK 358
VE E +++ E + L + G E+ + I IE AE A K
Sbjct: 193 M----MVESEAYELSEAEMLGAVKFGHEQMQPVIDLIIELAETAAK 234
>sp|Q1MTN9|RLF2_SCHPO Chromatin assembly factor 1 subunit rlf2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rlf2 PE=3 SV=2
Length = 544
Score = 32.7 bits (73), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 71/143 (49%), Gaps = 20/143 (13%)
Query: 256 GSINLTSLPELPSISNDSSGTSSSSQNMEDVEDDVKRLKMELKQTMDMYNA---ACKEAL 312
S ++TSL S+S+ + SS + + ++ V +L E + +YN A KE
Sbjct: 24 SSTDITSL----SVSSPNESVIHSSHSASEADEYVCKLSYEGNRKKRIYNGSAEAGKEKK 79
Query: 313 AAKQKAVELEKWKMKEEKRLK---ETQMGEERGKAKIKAAIEAAEAAQKIAKLE------ 363
KQ+A E E+ + KE +RLK E Q E+ K + + I AA+ +++ KLE
Sbjct: 80 LQKQRAQE-ERIRQKEAERLKREKERQQREQEKKLREQEKI-AAKKMKELEKLEKERIRL 137
Query: 364 --VQKRVNAEAKALKEAEEKRKL 384
Q+R + L+E EE ++L
Sbjct: 138 QEQQRRKEERDQKLREKEEAQRL 160
>sp|P14105|MYH9_CHICK Myosin-9 OS=Gallus gallus GN=MYH9 PE=2 SV=1
Length = 1959
Score = 32.3 bits (72), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 73/150 (48%), Gaps = 18/150 (12%)
Query: 260 LTSLPELPSISNDSSGTSSSSQNMEDVEDDVKRLKMELKQTMDMYNAACKEALAAKQKAV 319
+T L E + ++ + + + + D+ ++++ LK EL+ T+D AA +E + +++ V
Sbjct: 1113 ITELQE--DLESERASRNKAEKQKRDLGEELEALKTELEDTLD-STAAQQELRSKREQEV 1169
Query: 320 ELEKWKMKEEKRLKETQMGEERGK---------------AKIKAAIEAAEAAQKIAKLEV 364
+ K +++E + E Q+ E R K ++KA +E A+ A + + E+
Sbjct: 1170 TVLKKTLEDEAKTHEAQIQEMRQKHSQAIEELAEQLEQTKRVKANLEKAKQALESERAEL 1229
Query: 365 QKRVNAEAKALKEAEEKRKLLDALWQSHMV 394
V + +AE KRK +DA Q V
Sbjct: 1230 SNEVKVLLQGKGDAEHKRKKVDAQLQELQV 1259
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.129 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 142,388,634
Number of Sequences: 539616
Number of extensions: 5506723
Number of successful extensions: 32865
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 788
Number of HSP's that attempted gapping in prelim test: 29929
Number of HSP's gapped (non-prelim): 2899
length of query: 421
length of database: 191,569,459
effective HSP length: 120
effective length of query: 301
effective length of database: 126,815,539
effective search space: 38171477239
effective search space used: 38171477239
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)