Query 044284
Match_columns 421
No_of_seqs 252 out of 1297
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 13:09:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044284.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044284hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01989 STK_N The N-terminal d 100.0 3.3E-28 7.1E-33 214.4 16.3 146 20-170 1-146 (146)
2 PRK15456 universal stress prot 99.9 1.7E-22 3.7E-27 178.0 15.6 140 17-168 1-142 (142)
3 PRK15005 universal stress prot 99.9 2.7E-22 5.8E-27 176.0 15.5 142 17-168 1-144 (144)
4 PRK09982 universal stress prot 99.9 2E-21 4.3E-26 172.0 12.6 138 17-169 2-139 (142)
5 PRK15118 universal stress glob 99.9 5.9E-21 1.3E-25 168.2 12.9 138 17-169 2-139 (144)
6 PF00582 Usp: Universal stress 99.8 2.6E-20 5.6E-25 158.3 15.0 140 17-168 1-140 (140)
7 cd01988 Na_H_Antiporter_C The 99.8 1.3E-19 2.8E-24 155.5 15.4 132 20-168 1-132 (132)
8 PRK10116 universal stress prot 99.8 2E-19 4.4E-24 157.6 13.8 138 17-169 2-139 (142)
9 cd01987 USP_OKCHK USP domain i 99.8 1.4E-19 3.1E-24 155.0 11.5 123 20-168 1-124 (124)
10 PRK11175 universal stress prot 99.8 9.4E-19 2E-23 172.3 14.0 145 17-170 2-147 (305)
11 PRK11175 universal stress prot 99.7 4.8E-17 1E-21 160.2 14.5 142 17-169 151-300 (305)
12 cd00293 USP_Like Usp: Universa 99.7 3.2E-16 6.9E-21 131.9 15.1 130 20-167 1-130 (130)
13 COG0589 UspA Universal stress 99.7 1.5E-15 3.3E-20 132.4 16.2 146 16-169 3-152 (154)
14 PRK12652 putative monovalent c 99.5 3.5E-13 7.6E-18 137.0 14.4 106 16-132 3-123 (357)
15 PRK10490 sensor protein KdpD; 99.2 1.1E-10 2.5E-15 131.8 13.4 128 17-171 249-376 (895)
16 COG2205 KdpD Osmosensitive K+ 99.0 1.8E-09 3.9E-14 117.4 12.7 136 17-177 247-382 (890)
17 cd01984 AANH_like Adenine nucl 98.1 8.5E-06 1.9E-10 65.6 7.5 84 21-166 1-85 (86)
18 TIGR02432 lysidine_TilS_N tRNA 97.2 0.004 8.6E-08 57.4 11.6 95 20-134 1-111 (189)
19 cd01992 PP-ATPase N-terminal d 96.6 0.023 5E-07 51.9 11.1 95 20-134 1-108 (185)
20 PF01171 ATP_bind_3: PP-loop f 96.5 0.029 6.3E-07 51.6 11.2 93 20-132 1-106 (182)
21 PLN03159 cation/H(+) antiporte 95.7 0.044 9.6E-07 62.2 9.6 154 16-172 456-619 (832)
22 cd01993 Alpha_ANH_like_II This 95.1 0.21 4.5E-06 45.3 10.3 93 20-132 1-116 (185)
23 PRK10696 tRNA 2-thiocytidine b 94.8 0.36 7.9E-06 47.1 11.6 94 17-133 28-142 (258)
24 TIGR00268 conserved hypothetic 93.3 0.58 1.3E-05 45.5 9.8 89 18-132 12-117 (252)
25 COG0037 MesJ tRNA(Ile)-lysidin 93.3 0.65 1.4E-05 45.7 10.2 95 19-135 22-133 (298)
26 PRK13820 argininosuccinate syn 93.1 0.81 1.8E-05 47.7 10.9 92 17-134 1-121 (394)
27 PRK12342 hypothetical protein; 92.2 0.71 1.5E-05 45.3 8.7 92 24-137 30-124 (254)
28 cd01990 Alpha_ANH_like_I This 91.7 1.3 2.8E-05 41.2 9.5 89 21-134 1-107 (202)
29 PLN00200 argininosuccinate syn 91.4 2.3 5E-05 44.6 11.8 94 16-135 3-126 (404)
30 PF05546 She9_MDM33: She9 / Md 89.4 20 0.00044 34.2 16.3 78 280-357 38-122 (207)
31 COG2086 FixA Electron transfer 89.1 1.6 3.5E-05 43.1 7.9 90 23-135 31-124 (260)
32 PTZ00121 MAEBL; Provisional 88.8 5.8 0.00013 47.2 13.0 13 19-31 95-107 (2084)
33 PRK03359 putative electron tra 87.4 3.1 6.8E-05 40.9 8.7 91 25-136 32-126 (256)
34 PLN03086 PRLI-interacting fact 87.1 1.6 3.6E-05 47.4 7.1 32 341-372 35-66 (567)
35 cd01712 ThiI ThiI is required 86.7 12 0.00025 34.1 11.6 35 20-58 1-35 (177)
36 KOG2417 Predicted G-protein co 86.3 17 0.00037 37.5 13.2 17 288-304 186-202 (462)
37 cd01996 Alpha_ANH_like_III Thi 86.0 7.8 0.00017 34.1 9.9 35 20-57 3-37 (154)
38 PRK10660 tilS tRNA(Ile)-lysidi 86.0 5.2 0.00011 42.3 10.1 69 18-106 15-84 (436)
39 PRK05253 sulfate adenylyltrans 85.6 4.8 0.0001 40.5 9.2 95 18-134 27-139 (301)
40 TIGR00342 thiazole biosynthesi 85.5 8.2 0.00018 39.8 11.1 38 16-57 170-207 (371)
41 cd01995 ExsB ExsB is a transcr 85.2 8.4 0.00018 34.6 9.8 86 20-134 1-88 (169)
42 PF09726 Macoilin: Transmembra 85.1 12 0.00025 42.1 12.7 16 283-298 420-435 (697)
43 TIGR00032 argG argininosuccina 84.9 6.1 0.00013 41.3 9.8 34 20-57 1-34 (394)
44 PRK04527 argininosuccinate syn 83.5 11 0.00024 39.5 11.0 104 18-133 2-120 (400)
45 PLN03159 cation/H(+) antiporte 83.4 9.8 0.00021 43.6 11.5 113 18-132 630-752 (832)
46 cd01986 Alpha_ANH_like Adenine 82.8 8.2 0.00018 31.8 8.1 34 21-58 1-34 (103)
47 cd01994 Alpha_ANH_like_IV This 82.7 13 0.00029 34.7 10.4 92 20-132 1-98 (194)
48 PRK09510 tolA cell envelope in 82.6 35 0.00075 35.7 14.1 8 307-314 116-123 (387)
49 PRK00509 argininosuccinate syn 82.2 23 0.0005 37.2 12.8 107 18-134 2-121 (399)
50 TIGR00884 guaA_Cterm GMP synth 82.1 18 0.0004 36.5 11.7 37 19-58 17-53 (311)
51 PRK14665 mnmA tRNA-specific 2- 81.3 12 0.00026 38.6 10.3 92 18-133 5-124 (360)
52 COG1606 ATP-utilizing enzymes 80.9 15 0.00033 36.2 10.1 89 19-132 18-123 (269)
53 cd07653 F-BAR_CIP4-like The F- 80.4 50 0.0011 31.7 13.8 38 284-321 115-152 (251)
54 cd07656 F-BAR_srGAP The F-BAR 79.0 17 0.00037 35.4 10.0 41 284-324 120-160 (241)
55 cd01997 GMP_synthase_C The C-t 79.0 20 0.00043 36.0 10.7 88 20-132 1-110 (295)
56 PF06364 DUF1068: Protein of u 78.3 7.5 0.00016 35.8 6.7 30 341-370 124-155 (176)
57 PHA02689 ORF051 putative membr 78.2 2.5 5.5E-05 36.9 3.5 29 386-415 22-50 (128)
58 cd01713 PAPS_reductase This do 78.1 13 0.00028 32.5 8.2 37 20-57 1-37 (173)
59 PRK00919 GMP synthase subunit 77.5 26 0.00056 35.4 11.0 37 19-58 22-58 (307)
60 KOG0163 Myosin class VI heavy 77.5 27 0.00059 39.3 11.7 22 352-373 965-986 (1259)
61 PF00875 DNA_photolyase: DNA p 75.0 15 0.00033 32.8 7.9 81 39-131 17-97 (165)
62 TIGR03573 WbuX N-acetyl sugar 74.1 23 0.00049 36.2 9.8 36 19-57 60-95 (343)
63 PF15290 Syntaphilin: Golgi-lo 73.7 1E+02 0.0022 30.8 13.7 83 288-400 68-152 (305)
64 PHA02967 hypothetical protein; 72.4 3.1 6.8E-05 36.4 2.5 23 393-415 25-47 (128)
65 TIGR00364 exsB protein. This p 72.3 28 0.00061 32.3 9.3 33 21-57 1-33 (201)
66 PF01012 ETF: Electron transfe 72.2 41 0.0009 30.0 10.1 79 28-132 14-100 (164)
67 TIGR00289 conserved hypothetic 72.0 51 0.0011 31.8 11.0 92 20-132 2-95 (222)
68 PF09726 Macoilin: Transmembra 72.0 42 0.00091 37.8 11.9 29 283-311 547-575 (697)
69 KOG1029 Endocytic adaptor prot 71.9 18 0.00039 40.7 8.7 36 286-321 327-362 (1118)
70 PRK14664 tRNA-specific 2-thiou 70.3 42 0.00092 34.7 10.7 87 18-133 5-119 (362)
71 PRK00143 mnmA tRNA-specific 2- 69.8 29 0.00062 35.5 9.4 100 19-134 1-128 (346)
72 KOG1029 Endocytic adaptor prot 69.6 79 0.0017 35.9 12.8 7 291-297 323-329 (1118)
73 cd01985 ETF The electron trans 69.5 51 0.0011 29.9 10.2 24 111-134 80-103 (181)
74 KOG1144 Translation initiation 69.4 23 0.0005 40.0 8.8 26 348-373 256-281 (1064)
75 PRK08349 hypothetical protein; 69.2 65 0.0014 29.9 11.0 33 20-56 2-34 (198)
76 cd01999 Argininosuccinate_Synt 69.1 38 0.00082 35.4 10.1 35 21-58 1-35 (385)
77 PRK00074 guaA GMP synthase; Re 68.5 44 0.00095 36.1 10.8 88 19-131 216-325 (511)
78 TIGR00591 phr2 photolyase PhrI 68.4 37 0.00081 35.8 10.2 84 33-131 39-122 (454)
79 KOG0161 Myosin class II heavy 68.2 69 0.0015 40.1 13.3 75 288-362 1470-1547(1930)
80 TIGR02039 CysD sulfate adenyly 67.0 52 0.0011 33.1 10.3 95 18-134 19-131 (294)
81 PRK14561 hypothetical protein; 65.5 44 0.00095 31.2 9.0 85 20-134 2-106 (194)
82 cd07654 F-BAR_FCHSD The F-BAR 65.5 65 0.0014 31.9 10.5 38 284-321 120-157 (264)
83 PRK14057 epimerase; Provisiona 64.3 70 0.0015 31.6 10.4 44 86-131 180-223 (254)
84 KOG0163 Myosin class VI heavy 64.2 1.1E+02 0.0024 34.8 12.7 23 85-107 489-511 (1259)
85 KOG0994 Extracellular matrix g 63.0 91 0.002 37.0 12.1 46 279-324 1617-1669(1758)
86 cd01998 tRNA_Me_trans tRNA met 63.0 65 0.0014 33.0 10.4 96 20-133 1-124 (349)
87 PRK08091 ribulose-phosphate 3- 62.6 64 0.0014 31.3 9.7 44 86-131 166-209 (228)
88 PTZ00266 NIMA-related protein 62.5 47 0.001 39.0 10.2 12 15-26 23-34 (1021)
89 KOG0646 WD40 repeat protein [G 62.5 17 0.00037 38.4 6.0 31 283-313 430-460 (476)
90 KOG0288 WD40 repeat protein Ti 61.8 61 0.0013 34.1 9.7 23 283-305 50-72 (459)
91 KOG2891 Surface glycoprotein [ 61.0 66 0.0014 32.2 9.4 25 316-340 331-355 (445)
92 KOG4661 Hsp27-ERE-TATA-binding 61.0 26 0.00057 38.1 7.2 65 326-390 623-695 (940)
93 COG0036 Rpe Pentose-5-phosphat 60.5 42 0.00092 32.4 7.9 43 86-131 157-199 (220)
94 TIGR00420 trmU tRNA (5-methyla 60.5 1E+02 0.0022 31.7 11.3 34 19-56 1-34 (352)
95 KOG2412 Nuclear-export-signal 60.3 84 0.0018 34.2 10.7 16 287-302 163-178 (591)
96 cd07657 F-BAR_Fes_Fer The F-BA 59.8 91 0.002 30.2 10.3 38 284-321 115-152 (237)
97 PRK09722 allulose-6-phosphate 58.8 59 0.0013 31.5 8.7 44 86-131 156-199 (229)
98 cd01714 ETF_beta The electron 57.6 1.5E+02 0.0032 27.8 11.1 88 22-137 28-123 (202)
99 TIGR03679 arCOG00187 arCOG0018 57.3 1.1E+02 0.0024 29.1 10.3 88 23-132 2-96 (218)
100 PRK11106 queuosine biosynthesi 57.1 1.4E+02 0.003 28.9 11.0 35 19-57 2-36 (231)
101 PRK01565 thiamine biosynthesis 56.9 1.3E+02 0.0028 31.3 11.6 37 16-56 174-210 (394)
102 COG2102 Predicted ATPases of P 56.2 1.4E+02 0.0029 29.0 10.5 119 20-145 2-157 (223)
103 PF14992 TMCO5: TMCO5 family 55.9 1E+02 0.0022 30.9 9.9 45 283-328 118-165 (280)
104 KOG0161 Myosin class II heavy 55.8 1.5E+02 0.0033 37.3 13.2 81 282-362 1063-1144(1930)
105 PRK01269 tRNA s(4)U8 sulfurtra 55.7 1.2E+02 0.0025 32.6 11.2 38 16-57 175-212 (482)
106 TIGR02765 crypto_DASH cryptoch 55.7 79 0.0017 33.0 9.8 88 33-131 17-105 (429)
107 PRK08576 hypothetical protein; 55.7 64 0.0014 34.3 9.0 34 20-57 236-269 (438)
108 PF07946 DUF1682: Protein of u 55.5 40 0.00086 34.1 7.3 20 289-308 229-248 (321)
109 KOG4364 Chromatin assembly fac 55.3 1.7E+02 0.0036 32.9 12.0 47 341-390 330-376 (811)
110 PF00769 ERM: Ezrin/radixin/mo 54.3 1.8E+02 0.0038 28.4 11.3 32 290-321 7-38 (246)
111 TIGR03556 photolyase_8HDF deox 54.0 64 0.0014 34.4 8.9 83 33-131 17-99 (471)
112 PF10174 Cast: RIM-binding pro 52.7 2.4E+02 0.0052 32.3 13.4 101 281-381 364-486 (775)
113 PF06730 FAM92: FAM92 protein; 52.6 2.3E+02 0.0049 27.4 11.9 58 283-340 81-138 (219)
114 PRK08745 ribulose-phosphate 3- 52.0 81 0.0018 30.3 8.5 44 86-131 158-201 (223)
115 KOG0994 Extracellular matrix g 51.9 3.8E+02 0.0083 32.3 14.6 39 283-321 1417-1455(1758)
116 PF14943 MRP-S26: Mitochondria 51.8 2E+02 0.0043 26.6 12.2 28 289-316 28-55 (170)
117 TIGR00290 MJ0570_dom MJ0570-re 50.8 1.8E+02 0.0039 28.1 10.6 92 20-132 2-95 (223)
118 KOG2991 Splicing regulator [RN 50.8 69 0.0015 31.7 7.6 77 285-377 174-260 (330)
119 PLN03086 PRLI-interacting fact 50.3 53 0.0011 36.1 7.5 20 324-343 12-31 (567)
120 PF05262 Borrelia_P83: Borreli 49.8 1.9E+02 0.0042 31.2 11.5 12 47-58 49-60 (489)
121 TIGR01010 BexC_CtrB_KpsE polys 49.4 91 0.002 31.7 8.9 94 281-374 214-308 (362)
122 KOG4403 Cell surface glycoprot 48.7 1.9E+02 0.0041 30.8 10.8 62 291-354 255-322 (575)
123 KOG2891 Surface glycoprotein [ 48.5 1.1E+02 0.0025 30.5 8.8 21 363-383 349-369 (445)
124 KOG2412 Nuclear-export-signal 48.0 76 0.0017 34.5 8.1 16 285-300 168-183 (591)
125 PF02844 GARS_N: Phosphoribosy 47.6 17 0.00037 30.7 2.6 70 20-131 2-71 (100)
126 TIGR01162 purE phosphoribosyla 47.4 62 0.0014 29.6 6.4 66 87-168 15-83 (156)
127 KOG0971 Microtubule-associated 47.3 2.2E+02 0.0047 33.2 11.6 38 289-326 256-300 (1243)
128 PF06508 QueC: Queuosine biosy 46.8 1.1E+02 0.0024 29.0 8.4 34 20-57 1-34 (209)
129 COG4942 Membrane-bound metallo 46.3 2.9E+02 0.0062 29.4 11.9 19 320-338 214-232 (420)
130 PRK05370 argininosuccinate syn 45.5 2.6E+02 0.0057 29.9 11.5 104 18-137 11-137 (447)
131 PF12459 DUF3687: D-Ala-teicho 45.4 23 0.0005 25.3 2.6 16 398-413 13-28 (42)
132 KOG3223 Uncharacterized conser 45.4 2.8E+02 0.006 26.4 10.5 102 306-408 16-153 (221)
133 PHA03162 hypothetical protein; 45.4 69 0.0015 28.4 6.1 21 280-300 12-32 (135)
134 COG0151 PurD Phosphoribosylami 45.1 66 0.0014 34.0 7.0 34 20-59 2-35 (428)
135 PF09388 SpoOE-like: Spo0E lik 44.9 24 0.00051 25.1 2.7 36 286-321 2-37 (45)
136 KOG1962 B-cell receptor-associ 44.8 68 0.0015 30.9 6.5 53 283-335 153-208 (216)
137 PTZ00323 NAD+ synthase; Provis 44.7 2.3E+02 0.005 28.5 10.7 40 18-57 46-86 (294)
138 PRK12563 sulfate adenylyltrans 44.6 1.6E+02 0.0034 30.0 9.5 41 18-58 37-77 (312)
139 PF12107 VEK-30: Plasminogen ( 43.8 21 0.00045 20.4 1.7 10 287-296 2-11 (17)
140 COG0041 PurE Phosphoribosylcar 43.5 79 0.0017 28.9 6.4 40 93-132 25-67 (162)
141 PF06936 Selenoprotein_S: Sele 43.4 70 0.0015 30.2 6.4 43 309-351 75-120 (190)
142 cd07678 F-BAR_FCHSD1 The F-BAR 43.3 1.8E+02 0.0039 28.9 9.4 40 284-323 119-158 (263)
143 PF06409 NPIP: Nuclear pore co 43.1 2.4E+02 0.0052 27.6 9.8 50 284-335 94-146 (265)
144 KOG2129 Uncharacterized conser 42.4 2.4E+02 0.0052 29.9 10.4 77 282-384 254-330 (552)
145 PF02568 ThiI: Thiamine biosyn 42.0 1.2E+02 0.0027 28.6 7.8 38 17-58 2-39 (197)
146 PF00731 AIRC: AIR carboxylase 41.8 50 0.0011 30.0 4.9 66 87-168 17-85 (150)
147 PHA03155 hypothetical protein; 41.7 30 0.00066 29.9 3.3 22 279-300 6-27 (115)
148 PF10211 Ax_dynein_light: Axon 41.6 3E+02 0.0065 25.7 13.9 31 290-320 86-117 (189)
149 PF03904 DUF334: Domain of unk 41.6 3.4E+02 0.0074 26.4 14.3 20 398-417 152-171 (230)
150 KOG2002 TPR-containing nuclear 41.1 2.5E+02 0.0055 32.8 11.2 16 282-297 774-789 (1018)
151 TIGR00552 nadE NAD+ synthetase 40.9 1.5E+02 0.0032 28.7 8.5 37 17-56 21-57 (250)
152 smart00224 GGL G protein gamma 40.8 25 0.00055 27.0 2.5 28 284-311 2-29 (63)
153 KOG4119 G protein gamma subuni 40.6 60 0.0013 25.8 4.6 37 283-329 9-45 (71)
154 cd03364 TOPRIM_DnaG_primases T 40.1 72 0.0016 24.9 5.1 34 18-51 43-76 (79)
155 TIGR02680 conserved hypothetic 39.8 6.1E+02 0.013 31.0 14.9 16 281-296 230-245 (1353)
156 PF04849 HAP1_N: HAP1 N-termin 39.7 4.2E+02 0.0092 26.9 11.9 93 282-377 168-283 (306)
157 cd07647 F-BAR_PSTPIP The F-BAR 39.3 3.1E+02 0.0068 26.3 10.4 36 284-319 102-144 (239)
158 PF05917 DUF874: Helicobacter 38.5 2.2E+02 0.0047 28.8 9.0 75 308-382 133-214 (398)
159 PF06024 DUF912: Nucleopolyhed 38.0 8.9 0.00019 32.3 -0.5 18 401-419 72-89 (101)
160 KOG2072 Translation initiation 37.4 6.8E+02 0.015 29.1 13.5 83 295-381 543-635 (988)
161 KOG0999 Microtubule-associated 37.4 6.1E+02 0.013 28.1 13.3 30 279-308 6-35 (772)
162 PF02887 PK_C: Pyruvate kinase 37.4 45 0.00099 28.2 3.8 48 110-173 4-51 (117)
163 PF00631 G-gamma: GGL domain; 37.0 33 0.00071 26.6 2.6 31 283-313 4-34 (68)
164 PRK00409 recombination and DNA 36.9 5.9E+02 0.013 29.2 13.6 21 109-129 276-296 (782)
165 KOG2357 Uncharacterized conser 36.5 1.1E+02 0.0023 32.4 6.9 29 310-338 360-388 (440)
166 cd00068 GGL G protein gamma su 36.5 42 0.0009 25.2 3.0 27 284-310 2-28 (57)
167 PF05812 Herpes_BLRF2: Herpesv 36.4 45 0.00097 29.1 3.5 20 282-301 4-23 (118)
168 PF12128 DUF3584: Protein of u 36.0 8.5E+02 0.018 29.3 15.3 19 283-301 602-620 (1201)
169 PF15013 CCSMST1: CCSMST1 fami 35.6 17 0.00037 29.3 0.8 37 383-419 16-52 (77)
170 PRK08005 epimerase; Validated 35.3 2.3E+02 0.0049 27.1 8.6 28 103-131 166-193 (210)
171 PF05890 Ebp2: Eukaryotic rRNA 34.9 4.7E+02 0.01 26.0 11.2 84 298-389 76-173 (271)
172 cd07677 F-BAR_FCHSD2 The F-BAR 34.8 3.5E+02 0.0075 26.9 9.9 36 283-318 119-154 (260)
173 COG1422 Predicted membrane pro 34.8 68 0.0015 30.5 4.7 37 289-327 73-109 (201)
174 PRK08883 ribulose-phosphate 3- 34.5 2E+02 0.0044 27.4 8.2 44 86-131 154-197 (220)
175 cd07639 BAR_ACAP1 The Bin/Amph 34.4 4.1E+02 0.0089 25.2 13.9 36 282-317 3-41 (200)
176 PRK12858 tagatose 1,6-diphosph 34.3 3.9E+02 0.0083 27.5 10.6 130 21-171 86-251 (340)
177 TIGR03183 DNA_S_dndC putative 34.2 3.5E+02 0.0075 29.0 10.5 75 19-105 14-90 (447)
178 cd02067 B12-binding B12 bindin 34.1 88 0.0019 26.2 5.1 40 91-132 21-60 (119)
179 cd07651 F-BAR_PombeCdc15_like 33.6 3.5E+02 0.0076 25.8 9.7 23 295-317 121-143 (236)
180 PRK13428 F0F1 ATP synthase sub 33.4 6.1E+02 0.013 26.9 12.8 8 307-314 47-54 (445)
181 cd07655 F-BAR_PACSIN The F-BAR 33.2 4.4E+02 0.0095 25.6 10.5 38 283-320 114-158 (258)
182 PLN03188 kinesin-12 family pro 33.1 5.7E+02 0.012 31.0 12.6 86 296-384 1083-1176(1320)
183 PF05262 Borrelia_P83: Borreli 33.0 6.7E+02 0.014 27.2 13.9 14 120-133 64-77 (489)
184 PF12128 DUF3584: Protein of u 32.8 8.6E+02 0.019 29.3 14.6 32 286-317 619-650 (1201)
185 KOG2072 Translation initiation 32.7 6.7E+02 0.015 29.1 12.5 35 306-340 584-618 (988)
186 KOG1467 Translation initiation 32.7 2E+02 0.0043 31.1 8.2 108 20-170 361-470 (556)
187 PF00448 SRP54: SRP54-type pro 32.4 1.7E+02 0.0038 27.2 7.2 93 19-137 3-98 (196)
188 PF04007 DUF354: Protein of un 32.0 32 0.00068 35.2 2.3 50 85-138 15-64 (335)
189 KOG0742 AAA+-type ATPase [Post 31.7 6.9E+02 0.015 27.0 14.2 22 369-390 241-262 (630)
190 KOG3054 Uncharacterized conser 31.7 2.9E+02 0.0063 27.3 8.5 6 294-299 110-115 (299)
191 PRK11637 AmiB activator; Provi 31.5 6.2E+02 0.013 26.4 14.5 25 286-310 73-97 (428)
192 PRK13980 NAD synthetase; Provi 31.5 4.2E+02 0.009 25.8 10.0 38 18-57 30-67 (265)
193 PF07795 DUF1635: Protein of u 31.2 1.2E+02 0.0025 29.3 5.8 38 285-322 23-60 (214)
194 PF07111 HCR: Alpha helical co 31.2 5E+02 0.011 29.4 11.2 48 284-337 552-603 (739)
195 PF00834 Ribul_P_3_epim: Ribul 31.0 50 0.0011 31.2 3.3 45 84-130 151-195 (201)
196 PF05701 WEMBL: Weak chloropla 30.8 6.3E+02 0.014 27.4 12.1 100 280-379 336-438 (522)
197 PHA02818 hypothetical protein; 30.7 55 0.0012 27.0 3.0 10 407-416 76-85 (92)
198 PF03746 LamB_YcsF: LamB/YcsF 30.6 3.2E+02 0.007 26.8 8.8 57 76-132 80-145 (242)
199 TIGR02766 crypt_chrom_pln cryp 30.5 2.1E+02 0.0046 30.3 8.4 83 33-131 14-96 (475)
200 PRK08384 thiamine biosynthesis 30.5 2.8E+02 0.006 29.0 8.9 38 15-56 177-214 (381)
201 TIGR01932 hflC HflC protein. H 30.2 3.8E+02 0.0083 26.9 9.8 28 370-398 259-287 (317)
202 cd01460 vWA_midasin VWA_Midasi 30.2 5.5E+02 0.012 25.4 11.1 24 110-133 182-205 (266)
203 COG0137 ArgG Argininosuccinate 29.9 6.8E+02 0.015 26.4 12.2 105 18-137 4-127 (403)
204 TIGR02452 conserved hypothetic 29.5 56 0.0012 32.4 3.5 26 112-137 195-220 (266)
205 PF14182 YgaB: YgaB-like prote 29.4 1.3E+02 0.0028 24.4 4.8 32 283-314 42-73 (79)
206 COG2268 Uncharacterized protei 29.2 6.4E+02 0.014 27.7 11.5 27 329-355 370-396 (548)
207 PRK10674 deoxyribodipyrimidine 29.0 2.9E+02 0.0063 29.4 9.1 85 33-131 18-105 (472)
208 PLN03188 kinesin-12 family pro 29.0 3.2E+02 0.0069 33.0 9.7 55 314-377 1195-1250(1320)
209 TIGR00930 2a30 K-Cl cotranspor 28.5 6.1E+02 0.013 29.8 12.1 96 19-131 576-676 (953)
210 TIGR00273 iron-sulfur cluster- 28.3 1.5E+02 0.0032 31.5 6.6 58 72-131 39-97 (432)
211 PF09744 Jnk-SapK_ap_N: JNK_SA 28.2 4.7E+02 0.01 23.9 11.8 22 285-306 47-68 (158)
212 PLN02828 formyltetrahydrofolat 27.9 3E+02 0.0065 27.3 8.3 86 17-130 69-155 (268)
213 PRK13054 lipid kinase; Reviewe 27.9 1.7E+02 0.0037 28.9 6.7 68 91-170 25-93 (300)
214 TIGR01765 tspaseT_teng_N trans 27.8 75 0.0016 24.8 3.3 21 294-314 13-33 (73)
215 PRK15178 Vi polysaccharide exp 27.6 6.3E+02 0.014 27.0 11.0 43 374-416 377-425 (434)
216 KOG3385 V-SNARE [Intracellular 27.3 59 0.0013 28.3 2.8 23 393-415 96-118 (118)
217 PRK10867 signal recognition pa 27.3 4.9E+02 0.011 27.7 10.2 96 17-137 100-198 (433)
218 PF13167 GTP-bdg_N: GTP-bindin 27.2 2.3E+02 0.0049 23.7 6.2 50 82-131 6-66 (95)
219 KOG0244 Kinesin-like protein [ 27.2 5.1E+02 0.011 30.2 10.7 118 282-408 517-641 (913)
220 PF13362 Toprim_3: Toprim doma 27.1 1.3E+02 0.0028 24.2 4.8 35 17-51 40-76 (96)
221 PHA02650 hypothetical protein; 26.7 74 0.0016 25.8 3.0 19 401-419 57-75 (81)
222 cd07680 F-BAR_PACSIN1 The F-BA 26.7 5E+02 0.011 25.6 9.5 34 284-317 115-155 (258)
223 KOG1103 Predicted coiled-coil 26.4 5.6E+02 0.012 26.7 9.8 35 284-318 138-172 (561)
224 KOG3180 Electron transfer flav 26.3 2.5E+02 0.0054 27.0 6.9 81 29-132 40-124 (254)
225 COG5269 ZUO1 Ribosome-associat 26.2 2.7E+02 0.0059 27.9 7.4 35 318-352 242-276 (379)
226 PRK09510 tolA cell envelope in 26.1 7.9E+02 0.017 25.8 14.2 6 384-389 258-263 (387)
227 PRK00247 putative inner membra 26.0 5.6E+02 0.012 27.3 10.2 20 281-300 281-300 (429)
228 COG1540 Uncharacterized protei 25.8 2.2E+02 0.0047 28.0 6.6 48 86-133 92-148 (252)
229 TIGR00646 MG010 DNA primase-re 25.6 1.4E+02 0.0029 28.9 5.2 35 18-52 154-188 (218)
230 PF05582 Peptidase_U57: YabG p 25.5 1.7E+02 0.0036 29.5 5.9 39 93-131 125-163 (287)
231 cd07679 F-BAR_PACSIN2 The F-BA 25.3 4.5E+02 0.0097 26.1 8.8 36 284-319 115-157 (258)
232 PRK00409 recombination and DNA 25.3 9.4E+02 0.02 27.6 12.7 19 283-301 518-536 (782)
233 COG5269 ZUO1 Ribosome-associat 25.2 6E+02 0.013 25.6 9.6 44 327-370 237-282 (379)
234 PF10174 Cast: RIM-binding pro 25.0 4.9E+02 0.011 29.9 10.2 101 281-389 664-766 (775)
235 COG0415 PhrB Deoxyribodipyrimi 24.8 4.2E+02 0.0091 28.5 9.2 82 33-131 18-99 (461)
236 cd02071 MM_CoA_mut_B12_BD meth 24.7 1.6E+02 0.0034 25.1 5.0 39 92-132 22-60 (122)
237 PF11500 Cut12: Spindle pole b 24.7 3.4E+02 0.0074 24.7 7.3 12 284-295 80-91 (152)
238 cd01029 TOPRIM_primases TOPRIM 24.6 1.9E+02 0.004 22.2 5.1 33 18-50 43-75 (79)
239 TIGR02852 spore_dpaB dipicolin 24.4 1.2E+02 0.0027 28.4 4.6 34 19-52 1-34 (187)
240 TIGR00959 ffh signal recogniti 24.4 5.7E+02 0.012 27.1 10.1 97 16-137 98-197 (428)
241 PLN02347 GMP synthetase 24.3 3.6E+02 0.0079 29.5 8.8 39 17-58 228-266 (536)
242 PF13662 Toprim_4: Toprim doma 24.2 1E+02 0.0022 24.2 3.5 33 18-50 46-78 (81)
243 TIGR02855 spore_yabG sporulati 24.1 2E+02 0.0042 28.9 6.1 38 94-131 125-162 (283)
244 PF07926 TPR_MLP1_2: TPR/MLP1/ 24.1 4.8E+02 0.01 22.7 8.6 27 283-309 19-45 (132)
245 PF15361 RIC3: Resistance to i 23.8 74 0.0016 28.9 2.9 18 401-418 89-106 (152)
246 PF10097 DUF2335: Predicted me 23.8 2E+02 0.0044 21.1 4.7 30 352-381 16-45 (50)
247 cd06318 PBP1_ABC_sugar_binding 23.7 6E+02 0.013 23.7 10.6 32 22-53 99-130 (282)
248 cd08550 GlyDH-like Glycerol_de 23.6 1.7E+02 0.0037 29.6 5.9 44 87-130 39-86 (349)
249 PF01902 ATP_bind_4: ATP-bindi 23.5 5.2E+02 0.011 24.7 8.8 90 20-131 2-94 (218)
250 PF13155 Toprim_2: Toprim-like 23.1 1.7E+02 0.0037 23.3 4.7 30 17-46 46-75 (96)
251 KOG4001 Axonemal dynein light 23.0 6.9E+02 0.015 24.1 10.3 22 292-313 153-174 (259)
252 PF07946 DUF1682: Protein of u 22.8 2E+02 0.0044 29.0 6.2 11 108-118 92-102 (321)
253 PHA02031 putative DnaG-like pr 22.8 1.2E+02 0.0027 30.1 4.4 36 19-54 207-242 (266)
254 PF00072 Response_reg: Respons 22.8 2.7E+02 0.0058 21.9 5.9 48 111-169 32-79 (112)
255 PRK10550 tRNA-dihydrouridine s 22.7 4.1E+02 0.0089 26.8 8.3 137 19-174 63-205 (312)
256 PRK13010 purU formyltetrahydro 22.6 3.2E+02 0.0069 27.3 7.5 83 18-131 93-178 (289)
257 PF11559 ADIP: Afadin- and alp 22.6 5.3E+02 0.012 22.7 12.3 84 286-377 64-147 (151)
258 PF12718 Tropomyosin_1: Tropom 22.6 3.8E+02 0.0082 23.9 7.2 27 283-309 44-70 (143)
259 PRK06395 phosphoribosylamine-- 22.6 3.5E+02 0.0076 28.5 8.2 23 18-42 2-24 (435)
260 cd06317 PBP1_ABC_sugar_binding 22.5 6.2E+02 0.013 23.4 10.1 28 25-53 105-132 (275)
261 PF06098 Radial_spoke_3: Radia 22.5 7.8E+02 0.017 24.8 10.1 70 296-365 157-227 (291)
262 PF15437 PGBA_C: Plasminogen-b 22.4 4.2E+02 0.009 21.7 6.5 14 374-387 70-83 (86)
263 cd03406 Band_7_3 A subgroup of 22.3 2.5E+02 0.0055 27.9 6.6 23 345-367 181-203 (280)
264 COG4942 Membrane-bound metallo 22.3 9.6E+02 0.021 25.5 14.6 31 284-315 153-183 (420)
265 PF12777 MT: Microtubule-bindi 22.2 6.2E+02 0.013 25.7 9.7 78 283-363 10-88 (344)
266 PRK13011 formyltetrahydrofolat 22.1 4.3E+02 0.0093 26.3 8.2 82 18-130 89-173 (286)
267 PF15188 CCDC-167: Coiled-coil 22.1 3.2E+02 0.007 22.5 6.0 27 344-370 15-41 (85)
268 PRK06027 purU formyltetrahydro 22.0 5.4E+02 0.012 25.6 9.0 38 93-130 133-173 (286)
269 KOG0999 Microtubule-associated 22.0 1.1E+03 0.024 26.1 12.9 78 283-362 144-229 (772)
270 PF04518 Effector_1: Effector 21.9 3.9E+02 0.0085 28.0 8.0 55 333-390 199-253 (379)
271 PRK07313 phosphopantothenoylcy 21.7 1.5E+02 0.0032 27.6 4.5 31 19-50 2-32 (182)
272 PF15619 Lebercilin: Ciliary p 21.5 6.8E+02 0.015 23.5 13.5 33 279-311 59-91 (194)
273 PRK00766 hypothetical protein; 21.5 75 0.0016 30.0 2.6 69 97-177 42-116 (194)
274 PRK08475 F0F1 ATP synthase sub 21.5 6.2E+02 0.013 23.0 12.9 44 286-329 58-101 (167)
275 PF01008 IF-2B: Initiation fac 21.5 2.8E+02 0.0061 27.0 6.8 63 95-173 156-223 (282)
276 PF15168 TRIQK: Triple QxxK/R 21.4 3.1E+02 0.0066 22.2 5.5 49 363-416 23-71 (79)
277 PRK12569 hypothetical protein; 21.1 3.5E+02 0.0076 26.6 7.1 55 78-132 87-150 (245)
278 TIGR02113 coaC_strep phosphopa 21.1 1.5E+02 0.0033 27.3 4.5 31 19-50 1-31 (177)
279 PRK05406 LamB/YcsF family prot 21.0 3.9E+02 0.0084 26.3 7.4 54 79-132 85-147 (246)
280 KOG0996 Structural maintenance 21.0 1.3E+03 0.028 28.0 12.4 94 287-388 777-870 (1293)
281 cd07636 BAR_GRAF The Bin/Amphi 21.0 7.4E+02 0.016 23.7 13.7 36 282-317 3-41 (207)
282 cd07685 F-BAR_Fes The F-BAR (F 20.9 7.5E+02 0.016 24.2 9.2 38 284-321 119-157 (237)
283 PF12277 DUF3618: Protein of u 20.9 1.3E+02 0.0028 21.8 3.2 23 281-303 3-25 (49)
284 PF15236 CCDC66: Coiled-coil d 20.7 6.6E+02 0.014 23.0 10.7 9 332-340 87-95 (157)
285 cd07641 BAR_ASAP1 The Bin/Amph 20.7 7.1E+02 0.015 24.0 8.9 29 286-317 98-126 (215)
286 PF13935 Ead_Ea22: Ead/Ea22-li 20.6 5.9E+02 0.013 22.4 8.7 16 348-363 124-139 (139)
287 PRK02628 nadE NAD synthetase; 20.2 3.6E+02 0.0079 30.2 8.0 37 18-54 361-400 (679)
288 KOG3915 Transcription regulato 20.2 9.6E+02 0.021 26.0 10.4 21 297-317 505-525 (641)
289 cd07676 F-BAR_FBP17 The F-BAR 20.2 6.3E+02 0.014 24.7 8.8 33 286-318 119-151 (253)
290 PF04678 DUF607: Protein of un 20.1 6.8E+02 0.015 23.0 9.6 85 332-421 51-148 (180)
291 PF12001 DUF3496: Domain of un 20.1 5.5E+02 0.012 22.2 7.3 35 283-317 9-47 (111)
No 1
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=99.96 E-value=3.3e-28 Score=214.38 Aligned_cols=146 Identities=49% Similarity=0.776 Sum_probs=124.9
Q ss_pred EEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 044284 20 IVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRHIQ 99 (421)
Q Consensus 20 ~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~gV~ 99 (421)
+||||||+|+.|.+|++||++++...+++|++|||.++................+.+..+++++++|..+...|...|+.
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 80 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLATKGQTIVLVHVHPPITSIPSSSGKLEVASAYKQEEDKEAKELLLPYRCFCSRKGVQ 80 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccCCCCcEEEEEeccCcccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCe
Confidence 58999999999999999999999888999999999976533221111112234455666778889999999999888999
Q ss_pred eEEEEEEcCCHHHHHHHHHHHcCCCEEEEcCCCCCCCcccccccccccccccchhcccCCCcceEEEEeCC
Q 044284 100 CELVVLERQDVARALIEYVSQYGVETMLLGAPTKNGLSRSSFCRLFKASDTPGTVLKWAPDFCNVYIVSKG 170 (421)
Q Consensus 100 ~e~vvleg~dva~aIve~A~~~~idlIVmGs~gr~~f~~~~~~r~~~~~sVa~~V~k~Ap~~C~V~VV~kg 170 (421)
++.+++.|++|+++|++||+++++|+||||+||+++|. +.|+|+||+..|++++|++|||+||++|
T Consensus 81 ~~~~~~~g~~~~~~I~~~a~~~~~dlIV~Gs~g~~~l~-----~~~~gssva~~Vi~~a~~~c~Vlvv~~~ 146 (146)
T cd01989 81 CEDVVLEDDDVAKAIVEYVADHGITKLVMGASSDNHFS-----MKFKKSDVASSVLKEAPDFCTVYVVSKG 146 (146)
T ss_pred EEEEEEeCCcHHHHHHHHHHHcCCCEEEEeccCCCcee-----ecccCCchhHHHHhcCCCCceEEEEeCc
Confidence 99999988899999999999999999999999999998 7777668999999999999999999997
No 2
>PRK15456 universal stress protein UspG; Provisional
Probab=99.89 E-value=1.7e-22 Score=177.99 Aligned_cols=140 Identities=17% Similarity=0.149 Sum_probs=111.0
Q ss_pred CCCEEEEccCCC--HHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhh
Q 044284 17 REKIVAVAIDKD--KFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCT 94 (421)
Q Consensus 17 ~~~~IlVAVDgS--~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~ 94 (421)
||++|||||||| +.|.+|++||+.++.. +++|++|||.++........ .......+.+...+.+++.|..+...+.
T Consensus 1 m~~~ILv~vD~S~~~~s~~al~~A~~la~~-~~~l~llhv~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 78 (142)
T PRK15456 1 MYKTIIMPVDVFEMELSDKAVRHAEFLAQD-DGVIHLLHVLPGSASLSLHR-FAADVRRFEEHLQHEAEERLQTMVSHFT 78 (142)
T ss_pred CCccEEEeccCCchhHHHHHHHHHHHHHhc-CCeEEEEEEecCcccccccc-cccchhhHHHHHHHHHHHHHHHHHHHhC
Confidence 589999999999 4899999999999876 56899999998653211111 1122234555666777788888877766
Q ss_pred hcCCceEEEEEEcCCHHHHHHHHHHHcCCCEEEEcCCCCCCCcccccccccccccccchhcccCCCcceEEEEe
Q 044284 95 RRHIQCELVVLERQDVARALIEYVSQYGVETMLLGAPTKNGLSRSSFCRLFKASDTPGTVLKWAPDFCNVYIVS 168 (421)
Q Consensus 95 ~~gV~~e~vvleg~dva~aIve~A~~~~idlIVmGs~gr~~f~~~~~~r~~~~~sVa~~V~k~Ap~~C~V~VV~ 168 (421)
..+++++.++..| +|++.|+++|+++++|+||||+||++ +. +.|+ |||+.+|+++++ |||+||+
T Consensus 79 ~~~~~v~~~v~~G-~~~~~I~~~a~~~~~DLIVmG~~g~~-~~-----~~ll-GS~a~~v~~~a~--~pVLvV~ 142 (142)
T PRK15456 79 IDPSRIKQHVRFG-SVRDEVNELAEELGADVVVIGSRNPS-IS-----THLL-GSNASSVIRHAN--LPVLVVR 142 (142)
T ss_pred CCCcceEEEEcCC-ChHHHHHHHHhhcCCCEEEEcCCCCC-cc-----ceec-CccHHHHHHcCC--CCEEEeC
Confidence 5678888776665 89999999999999999999999976 66 6665 799999999999 9999985
No 3
>PRK15005 universal stress protein F; Provisional
Probab=99.89 E-value=2.7e-22 Score=176.04 Aligned_cols=142 Identities=13% Similarity=0.181 Sum_probs=107.6
Q ss_pred CCCEEEEccCCCHH--HHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhh
Q 044284 17 REKIVAVAIDKDKF--SQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCT 94 (421)
Q Consensus 17 ~~~~IlVAVDgS~~--S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~ 94 (421)
||++||||||||+. +++|++||.+++...+++|+++||.++.+...................++++++.|..+...+.
T Consensus 1 m~~~ILv~~D~s~~~~~~~a~~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 80 (144)
T PRK15005 1 MNRTILVPIDISDSELTQRVISHVEAEAKIDDAEVHFLTVIPSLPYYASLGLAYSAELPAMDDLKAEAKSQLEEIIKKFK 80 (144)
T ss_pred CCccEEEecCCCchhHHHHHHHHHHHHHhccCCeEEEEEEEccCcccccccccccccchHHHHHHHHHHHHHHHHHHHhC
Confidence 57899999999997 5899999999999889999999999864321110000000001122334555666776666666
Q ss_pred hcCCceEEEEEEcCCHHHHHHHHHHHcCCCEEEEcCCCCCCCcccccccccccccccchhcccCCCcceEEEEe
Q 044284 95 RRHIQCELVVLERQDVARALIEYVSQYGVETMLLGAPTKNGLSRSSFCRLFKASDTPGTVLKWAPDFCNVYIVS 168 (421)
Q Consensus 95 ~~gV~~e~vvleg~dva~aIve~A~~~~idlIVmGs~gr~~f~~~~~~r~~~~~sVa~~V~k~Ap~~C~V~VV~ 168 (421)
..++.++.++..| +|++.|+++|.++++|+||||+| ++++. +.|+ ||++.+|++++| |||+||+
T Consensus 81 ~~~~~~~~~v~~G-~p~~~I~~~a~~~~~DLIV~Gs~-~~~~~-----~~ll-GS~a~~vl~~a~--cpVlvVr 144 (144)
T PRK15005 81 LPTDRVHVHVEEG-SPKDRILELAKKIPADMIIIASH-RPDIT-----TYLL-GSNAAAVVRHAE--CSVLVVR 144 (144)
T ss_pred CCCCceEEEEeCC-CHHHHHHHHHHHcCCCEEEEeCC-CCCch-----heee-cchHHHHHHhCC--CCEEEeC
Confidence 6677788776654 79999999999999999999999 56787 6775 799999999999 9999984
No 4
>PRK09982 universal stress protein UspD; Provisional
Probab=99.86 E-value=2e-21 Score=172.02 Aligned_cols=138 Identities=12% Similarity=0.080 Sum_probs=106.1
Q ss_pred CCCEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 044284 17 REKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRR 96 (421)
Q Consensus 17 ~~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~ 96 (421)
+|++||||||||+.|++|+++|++++...+++|+++||.++.... .+...........+...+.+++.|..+...+..
T Consensus 2 ~~k~ILvavD~S~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 79 (142)
T PRK09982 2 AYKHIGVAISGNEEDALLVNKALELARHNDAHLTLIHIDDGLSEL-YPGIYFPATEDILQLLKNKSDNKLYKLTKNIQW- 79 (142)
T ss_pred CceEEEEEecCCcchHHHHHHHHHHHHHhCCeEEEEEEccCcchh-chhhhccchHHHHHHHHHHHHHHHHHHHHhcCC-
Confidence 578999999999999999999999999999999999998764321 111001112234455556667777777665542
Q ss_pred CCceEEEEEEcCCHHHHHHHHHHHcCCCEEEEcCCCCCCCcccccccccccccccchhcccCCCcceEEEEeC
Q 044284 97 HIQCELVVLERQDVARALIEYVSQYGVETMLLGAPTKNGLSRSSFCRLFKASDTPGTVLKWAPDFCNVYIVSK 169 (421)
Q Consensus 97 gV~~e~vvleg~dva~aIve~A~~~~idlIVmGs~gr~~f~~~~~~r~~~~~sVa~~V~k~Ap~~C~V~VV~k 169 (421)
..++..+.. |+|++.|+++|++.++|+||||+| ++++. +.| + |+..|+++++ |||+||+.
T Consensus 80 -~~~~~~v~~-G~p~~~I~~~A~~~~aDLIVmG~~-~~~~~-----~~~--~-va~~V~~~s~--~pVLvv~~ 139 (142)
T PRK09982 80 -PKTKLRIER-GEMPETLLEIMQKEQCDLLVCGHH-HSFIN-----RLM--P-AYRGMINKMS--ADLLIVPF 139 (142)
T ss_pred -CcceEEEEe-cCHHHHHHHHHHHcCCCEEEEeCC-hhHHH-----HHH--H-HHHHHHhcCC--CCEEEecC
Confidence 234444444 589999999999999999999987 88887 555 3 9999999999 99999975
No 5
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=99.85 E-value=5.9e-21 Score=168.16 Aligned_cols=138 Identities=12% Similarity=0.074 Sum_probs=100.2
Q ss_pred CCCEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 044284 17 REKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRR 96 (421)
Q Consensus 17 ~~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~ 96 (421)
+|++||||+|+|+.|++||+||++++...+++|+||||.++... ...+........+.+....+..+.|. .++...
T Consensus 2 ~~~~ILvavD~S~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~ 77 (144)
T PRK15118 2 AYKHILIAVDLSPESKVLVEKAVSMARPYNAKVSLIHVDVNYSD-LYTGLIDVNLGDMQKRISEETHHALT---ELSTNA 77 (144)
T ss_pred CceEEEEEccCChhHHHHHHHHHHHHHhhCCEEEEEEEccChhh-hhhhhhhcchHHHHHHHHHHHHHHHH---HHHHhC
Confidence 48899999999999999999999999888999999999543211 11010001112222333333334443 344566
Q ss_pred CCceEEEEEEcCCHHHHHHHHHHHcCCCEEEEcCCCCCCCcccccccccccccccchhcccCCCcceEEEEeC
Q 044284 97 HIQCELVVLERQDVARALIEYVSQYGVETMLLGAPTKNGLSRSSFCRLFKASDTPGTVLKWAPDFCNVYIVSK 169 (421)
Q Consensus 97 gV~~e~vvleg~dva~aIve~A~~~~idlIVmGs~gr~~f~~~~~~r~~~~~sVa~~V~k~Ap~~C~V~VV~k 169 (421)
|+.+...++..|+|+++|+++|+++++|+||||+|| +++ +.| |||+++|++++| |||+||+.
T Consensus 78 ~~~~~~~~~~~G~p~~~I~~~a~~~~~DLIV~Gs~~-~~~------~~l--gSva~~v~~~a~--~pVLvv~~ 139 (144)
T PRK15118 78 GYPITETLSGSGDLGQVLVDAIKKYDMDLVVCGHHQ-DFW------SKL--MSSARQLINTVH--VDMLIVPL 139 (144)
T ss_pred CCCceEEEEEecCHHHHHHHHHHHhCCCEEEEeCcc-cHH------HHH--HHHHHHHHhhCC--CCEEEecC
Confidence 888765566567899999999999999999999996 443 344 499999999999 99999985
No 6
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=99.85 E-value=2.6e-20 Score=158.27 Aligned_cols=140 Identities=25% Similarity=0.323 Sum_probs=103.9
Q ss_pred CCCEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 044284 17 REKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRR 96 (421)
Q Consensus 17 ~~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~ 96 (421)
||++||||+|+++.+.+|++||+.++...+++|+++||.++...... ............... ..........+...
T Consensus 1 M~~~Ilv~~d~~~~~~~al~~a~~la~~~~~~i~~l~v~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 76 (140)
T PF00582_consen 1 MYKRILVAIDGSEESRRALRFALELAKRSGAEITLLHVIPPPPQYSF---SAAEDEESEEEAEEE-EQARQAEAEEAEAE 76 (140)
T ss_dssp -TSEEEEEESSSHHHHHHHHHHHHHHHHHTCEEEEEEEEESCHCHHH---HHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHhhCCeEEEEEeecccccccc---ccccccccccccchh-hhhhhHHHHHHhhh
Confidence 58999999999999999999999999999999999999987643110 000000000000011 11111111444555
Q ss_pred CCceEEEEEEcCCHHHHHHHHHHHcCCCEEEEcCCCCCCCcccccccccccccccchhcccCCCcceEEEEe
Q 044284 97 HIQCELVVLERQDVARALIEYVSQYGVETMLLGAPTKNGLSRSSFCRLFKASDTPGTVLKWAPDFCNVYIVS 168 (421)
Q Consensus 97 gV~~e~vvleg~dva~aIve~A~~~~idlIVmGs~gr~~f~~~~~~r~~~~~sVa~~V~k~Ap~~C~V~VV~ 168 (421)
+.....+.+..++++++|++++.++++|+||||+++++++. +.|+ |+++..|++++| |||+||+
T Consensus 77 ~~~~~~~~~~~~~~~~~i~~~~~~~~~dliv~G~~~~~~~~-----~~~~-gs~~~~l~~~~~--~pVlvv~ 140 (140)
T PF00582_consen 77 GGIVIEVVIESGDVADAIIEFAEEHNADLIVMGSRGRSGLE-----RLLF-GSVAEKLLRHAP--CPVLVVP 140 (140)
T ss_dssp TTSEEEEEEEESSHHHHHHHHHHHTTCSEEEEESSSTTSTT-----TSSS-HHHHHHHHHHTS--SEEEEEE
T ss_pred ccceeEEEEEeeccchhhhhccccccceeEEEeccCCCCcc-----CCCc-CCHHHHHHHcCC--CCEEEeC
Confidence 66777777778899999999999999999999999999998 6664 799999999999 9999996
No 7
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=99.83 E-value=1.3e-19 Score=155.54 Aligned_cols=132 Identities=15% Similarity=0.215 Sum_probs=112.4
Q ss_pred EEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 044284 20 IVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRHIQ 99 (421)
Q Consensus 20 ~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~gV~ 99 (421)
+||||||+++++++|+++|..++...+++|+++||.++...... . .........++.+..+...+...|++
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~~~~~v~ll~v~~~~~~~~~-----~----~~~~~~~~~~~~~~~~~~~~~~~g~~ 71 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARAQNGEIIPLNVIEVPNHSSP-----S----QLEVNVQRARKLLRQAERIAASLGVP 71 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhcCCCeEEEEEEEecCCCCCc-----c----hhHHHHHHHHHHHHHHHHHhhhcCCc
Confidence 59999999999999999999999988999999999986542111 0 11223456778889999999889999
Q ss_pred eEEEEEEcCCHHHHHHHHHHHcCCCEEEEcCCCCCCCcccccccccccccccchhcccCCCcceEEEEe
Q 044284 100 CELVVLERQDVARALIEYVSQYGVETMLLGAPTKNGLSRSSFCRLFKASDTPGTVLKWAPDFCNVYIVS 168 (421)
Q Consensus 100 ~e~vvleg~dva~aIve~A~~~~idlIVmGs~gr~~f~~~~~~r~~~~~sVa~~V~k~Ap~~C~V~VV~ 168 (421)
++..+..+++|.++|++++.++++|+||||+++++++. +.++ ||++..|++++| |||+||+
T Consensus 72 ~~~~~~~~~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~-----~~~l-Gs~~~~v~~~~~--~pvlvv~ 132 (132)
T cd01988 72 VHTIIRIDHDIASGILRTAKERQADLIIMGWHGSTSLR-----DRLF-GGVIDQVLESAP--CDVAVVK 132 (132)
T ss_pred eEEEEEecCCHHHHHHHHHHhcCCCEEEEecCCCCCcc-----ceec-CchHHHHHhcCC--CCEEEeC
Confidence 99888777799999999999999999999999999987 6665 799999999999 9999984
No 8
>PRK10116 universal stress protein UspC; Provisional
Probab=99.82 E-value=2e-19 Score=157.58 Aligned_cols=138 Identities=12% Similarity=0.069 Sum_probs=106.8
Q ss_pred CCCEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 044284 17 REKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRR 96 (421)
Q Consensus 17 ~~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~ 96 (421)
+|++||||+|+|..++.||++|+.++...+++|+++||.++..... .........+.+...++.++.|..+ +.+.
T Consensus 2 ~~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~ 76 (142)
T PRK10116 2 SYSNILVAVAVTPESQQLLAKAVSIARPVNGKISLITLASDPEMYN--QFAAPMLEDLRSVMQEETQSFLDKL---IQDA 76 (142)
T ss_pred CCceEEEEccCCcchHHHHHHHHHHHHHhCCEEEEEEEccCcccch--hhhHHHHHHHHHHHHHHHHHHHHHH---HHhc
Confidence 4789999999999999999999999988899999999986643211 1111122334444444555555443 4556
Q ss_pred CCceEEEEEEcCCHHHHHHHHHHHcCCCEEEEcCCCCCCCcccccccccccccccchhcccCCCcceEEEEeC
Q 044284 97 HIQCELVVLERQDVARALIEYVSQYGVETMLLGAPTKNGLSRSSFCRLFKASDTPGTVLKWAPDFCNVYIVSK 169 (421)
Q Consensus 97 gV~~e~vvleg~dva~aIve~A~~~~idlIVmGs~gr~~f~~~~~~r~~~~~sVa~~V~k~Ap~~C~V~VV~k 169 (421)
|+....+++..|++.+.|+++|++.++|+||||+||++++. +.+ +|+++|+++++ |||+||+-
T Consensus 77 ~~~~~~~~~~~G~~~~~I~~~a~~~~~DLiV~g~~~~~~~~-----~~~---s~a~~v~~~~~--~pVLvv~~ 139 (142)
T PRK10116 77 DYPIEKTFIAYGELSEHILEVCRKHHFDLVICGNHNHSFFS-----RAS---CSAKRVIASSE--VDVLLVPL 139 (142)
T ss_pred CCCeEEEEEecCCHHHHHHHHHHHhCCCEEEEcCCcchHHH-----HHH---HHHHHHHhcCC--CCEEEEeC
Confidence 77766556667789999999999999999999999999987 543 79999999999 99999974
No 9
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=99.81 E-value=1.4e-19 Score=154.98 Aligned_cols=123 Identities=18% Similarity=0.192 Sum_probs=102.9
Q ss_pred EEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 044284 20 IVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRHIQ 99 (421)
Q Consensus 20 ~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~gV~ 99 (421)
+||||||+++.+.+|++||++++...++.|++|||.++... ...+++++.|+.+...++..++.
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~----------------~~~~~~~~~l~~~~~~~~~~~~~ 64 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADRLKAPWYVVYVETPRLN----------------RLSEAERRRLAEALRLAEELGAE 64 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHhCCCEEEEEEecCccc----------------cCCHHHHHHHHHHHHHHHHcCCE
Confidence 58999999999999999999999988999999999976431 01123455677777777766664
Q ss_pred eEEEEEEcCCHHHHHHHHHHHcCCCEEEEcCCCCCCCcccccccccccccccchhcccC-CCcceEEEEe
Q 044284 100 CELVVLERQDVARALIEYVSQYGVETMLLGAPTKNGLSRSSFCRLFKASDTPGTVLKWA-PDFCNVYIVS 168 (421)
Q Consensus 100 ~e~vvleg~dva~aIve~A~~~~idlIVmGs~gr~~f~~~~~~r~~~~~sVa~~V~k~A-p~~C~V~VV~ 168 (421)
+ .++.+++|+++|+++++++++|+||||++++++|. +.|+ ||++.+|++++ + |+|+||.
T Consensus 65 ~--~~~~~~~~~~~I~~~~~~~~~dllviG~~~~~~~~-----~~~~-Gs~~~~v~~~a~~--~~v~v~~ 124 (124)
T cd01987 65 V--VTLPGDDVAEAIVEFAREHNVTQIVVGKSRRSRWR-----ELFR-GSLVDRLLRRAGN--IDVHIVA 124 (124)
T ss_pred E--EEEeCCcHHHHHHHHHHHcCCCEEEeCCCCCchHH-----HHhc-ccHHHHHHHhCCC--CeEEEeC
Confidence 4 45667889999999999999999999999999998 7775 79999999999 6 9999984
No 10
>PRK11175 universal stress protein UspE; Provisional
Probab=99.79 E-value=9.4e-19 Score=172.33 Aligned_cols=145 Identities=17% Similarity=0.087 Sum_probs=114.8
Q ss_pred CCCEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCcccc-ccchHHHHHHHHHHHHHHHHHHHHHHhhh
Q 044284 17 REKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSV-GISEELIEQQQHDIHAMEVFLPFRCYCTR 95 (421)
Q Consensus 17 ~~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~elL~~~r~~c~~ 95 (421)
+|++||||+|+|+.|..|++||+.++...+++|+++||.++... ..++. .........+...++.++.|..+...+..
T Consensus 2 ~~~~ILv~~D~s~~~~~al~~a~~lA~~~~a~l~ll~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 80 (305)
T PRK11175 2 KYQNILVVIDPNQDDQPALRRAVYLAQRNGGKITAFLPIYDFSY-EMTTLLSPDEREAMRQGVISQRTAWIREQAKPYLD 80 (305)
T ss_pred CcceEEEEcCCCccccHHHHHHHHHHHhcCCCEEEEEeccCchh-hhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 47899999999999999999999999988999999999865422 11111 11111222233334456667777777777
Q ss_pred cCCceEEEEEEcCCHHHHHHHHHHHcCCCEEEEcCCCCCCCcccccccccccccccchhcccCCCcceEEEEeCC
Q 044284 96 RHIQCELVVLERQDVARALIEYVSQYGVETMLLGAPTKNGLSRSSFCRLFKASDTPGTVLKWAPDFCNVYIVSKG 170 (421)
Q Consensus 96 ~gV~~e~vvleg~dva~aIve~A~~~~idlIVmGs~gr~~f~~~~~~r~~~~~sVa~~V~k~Ap~~C~V~VV~kg 170 (421)
.|+.++..+..++++.++|+++|.++++|+||||++|.+++. +.|. |+++..|++++| |||+||+.+
T Consensus 81 ~~~~~~~~v~~~g~~~~~i~~~a~~~~~DLiV~G~~~~~~~~-----~~~~-gs~~~~l~~~~~--~pvlvv~~~ 147 (305)
T PRK11175 81 AGIPIEIKVVWHNRPFEAIIQEVIAGGHDLVVKMTHQHDKLE-----SVIF-TPTDWHLLRKCP--CPVLMVKDQ 147 (305)
T ss_pred cCCceEEEEecCCCcHHHHHHHHHhcCCCEEEEeCCCCcHHH-----hhcc-ChhHHHHHhcCC--CCEEEeccc
Confidence 899998877766799999999999999999999999999887 6775 699999999999 999999865
No 11
>PRK11175 universal stress protein UspE; Provisional
Probab=99.73 E-value=4.8e-17 Score=160.20 Aligned_cols=142 Identities=15% Similarity=0.161 Sum_probs=103.8
Q ss_pred CCCEEEEccCCCHH-------HHHHHHHHHHHHhcC-CCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHH
Q 044284 17 REKIVAVAIDKDKF-------SQHALKWAADNILSR-HQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLP 88 (421)
Q Consensus 17 ~~~~IlVAVDgS~~-------S~~ALkwAid~a~~~-ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~ 88 (421)
++++||||+|+|+. +..|+++|++++... +++|+|+||.+.................+.+..+.+..+.+..
T Consensus 151 ~~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 230 (305)
T PRK11175 151 EGGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQLNHAEVHLVNAYPVTPINIAIELPEFDPSVYNDAIRGQHLLAMKA 230 (305)
T ss_pred CCCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhCcCCceEEEEEecCcchhccccccccchhhHHHHHHHHHHHHHHH
Confidence 46899999999864 368999999999887 8999999998754321100000011223333333344444444
Q ss_pred HHHHhhhcCCceEEEEEEcCCHHHHHHHHHHHcCCCEEEEcCCCCCCCcccccccccccccccchhcccCCCcceEEEEe
Q 044284 89 FRCYCTRRHIQCELVVLERQDVARALIEYVSQYGVETMLLGAPTKNGLSRSSFCRLFKASDTPGTVLKWAPDFCNVYIVS 168 (421)
Q Consensus 89 ~r~~c~~~gV~~e~vvleg~dva~aIve~A~~~~idlIVmGs~gr~~f~~~~~~r~~~~~sVa~~V~k~Ap~~C~V~VV~ 168 (421)
++...++..+..++..|++.++|+++|+++++|+||||++|++++. +.|+ ||++..|++++| |||+||+
T Consensus 231 ---~~~~~~~~~~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~~~~~~~-----~~ll-GS~a~~v~~~~~--~pVLvv~ 299 (305)
T PRK11175 231 ---LRQKFGIDEEQTHVEEGLPEEVIPDLAEHLDAELVILGTVGRTGLS-----AAFL-GNTAEHVIDHLN--CDLLAIK 299 (305)
T ss_pred ---HHHHhCCChhheeeccCCHHHHHHHHHHHhCCCEEEECCCccCCCc-----ceee-cchHHHHHhcCC--CCEEEEc
Confidence 3444577665444555689999999999999999999999999998 7776 799999999999 9999996
Q ss_pred C
Q 044284 169 K 169 (421)
Q Consensus 169 k 169 (421)
.
T Consensus 300 ~ 300 (305)
T PRK11175 300 P 300 (305)
T ss_pred C
Confidence 4
No 12
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=99.71 E-value=3.2e-16 Score=131.90 Aligned_cols=130 Identities=28% Similarity=0.435 Sum_probs=109.6
Q ss_pred EEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 044284 20 IVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRHIQ 99 (421)
Q Consensus 20 ~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~gV~ 99 (421)
+||||+|+++.+..+++||.+++...+++|+++||.++..... . ...+....+.++.|..+...|...|+.
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~~~~~i~~l~v~~~~~~~~----~-----~~~~~~~~~~~~~l~~~~~~~~~~~~~ 71 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARRLGAELVLLHVVDPPPSSA----A-----ELAELLEEEARALLEALREALAEAGVK 71 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCCCCcc----h-----hHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 5899999999999999999999999999999999987653211 0 233444566778899999888888999
Q ss_pred eEEEEEEcCCHHHHHHHHHHHcCCCEEEEcCCCCCCCcccccccccccccccchhcccCCCcceEEEE
Q 044284 100 CELVVLERQDVARALIEYVSQYGVETMLLGAPTKNGLSRSSFCRLFKASDTPGTVLKWAPDFCNVYIV 167 (421)
Q Consensus 100 ~e~vvleg~dva~aIve~A~~~~idlIVmGs~gr~~f~~~~~~r~~~~~sVa~~V~k~Ap~~C~V~VV 167 (421)
+...+..+ +++++|+++++++++|+||||+++++.+. +.+. |+++..+++.++ |||++|
T Consensus 72 ~~~~~~~~-~~~~~i~~~~~~~~~dlvvig~~~~~~~~-----~~~~-~~~~~~ll~~~~--~pvliv 130 (130)
T cd00293 72 VETVVLEG-DPAEAILEAAEELGADLIVMGSRGRSGLR-----RLLL-GSVAERVLRHAP--CPVLVV 130 (130)
T ss_pred eEEEEecC-CCHHHHHHHHHHcCCCEEEEcCCCCCccc-----eeee-ccHHHHHHhCCC--CCEEeC
Confidence 88777765 56999999999999999999999999887 5564 799999999988 999985
No 13
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=99.68 E-value=1.5e-15 Score=132.42 Aligned_cols=146 Identities=22% Similarity=0.294 Sum_probs=115.7
Q ss_pred CCCCEEEEccC-CCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccc--cchHHHHHHHHHHHHHHHHHHHHHH
Q 044284 16 GREKIVAVAID-KDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVG--ISEELIEQQQHDIHAMEVFLPFRCY 92 (421)
Q Consensus 16 ~~~~~IlVAVD-gS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~elL~~~r~~ 92 (421)
.++.+|++++| +++.+..|+.+|+..+...+..+.++||.+........... ...............++.+..+.+.
T Consensus 3 ~~~~~il~~~d~~s~~~~~a~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (154)
T COG0589 3 AMYKKILVAVDVGSEAAEKALEEAVALAKRLGAPLILLVVIDPLEPTALVSVALADAPIPLSEEELEEEAEELLAEAKAL 82 (154)
T ss_pred cccceEEEEeCCCCHHHHHHHHHHHHHHHhcCCeEEEEEEecccccccccccccccchhhhhHHHHHHHHHHHHHHHHHH
Confidence 35789999999 99999999999999999889999999999765432111100 0111222344456678888888888
Q ss_pred hhhcCCce-EEEEEEcCCHHHHHHHHHHHcCCCEEEEcCCCCCCCcccccccccccccccchhcccCCCcceEEEEeC
Q 044284 93 CTRRHIQC-ELVVLERQDVARALIEYVSQYGVETMLLGAPTKNGLSRSSFCRLFKASDTPGTVLKWAPDFCNVYIVSK 169 (421)
Q Consensus 93 c~~~gV~~-e~vvleg~dva~aIve~A~~~~idlIVmGs~gr~~f~~~~~~r~~~~~sVa~~V~k~Ap~~C~V~VV~k 169 (421)
..+.++.. +..+..|..+.+.|++++.++++|+||||++|++++. +.+ .|||+.+|++++| |||+||+.
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~~~i~~~a~~~~adliV~G~~g~~~l~-----~~l-lGsvs~~v~~~~~--~pVlvv~~ 152 (154)
T COG0589 83 AEAAGVPVVETEVVEGSPSAEEILELAEEEDADLIVVGSRGRSGLS-----RLL-LGSVAEKVLRHAP--CPVLVVRS 152 (154)
T ss_pred HHHcCCCeeEEEEecCCCcHHHHHHHHHHhCCCEEEECCCCCcccc-----cee-eehhHHHHHhcCC--CCEEEEcc
Confidence 88889885 7666676554899999999999999999999999998 645 4799999999999 99999974
No 14
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=99.49 E-value=3.5e-13 Score=137.03 Aligned_cols=106 Identities=17% Similarity=0.236 Sum_probs=84.1
Q ss_pred CCCCEEEEccCCCHHHHHHHHHHHHHHhcC--CCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHh
Q 044284 16 GREKIVAVAIDKDKFSQHALKWAADNILSR--HQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYC 93 (421)
Q Consensus 16 ~~~~~IlVAVDgS~~S~~ALkwAid~a~~~--ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c 93 (421)
.+|++||||||||++|++|+++|++++... +++|++|||.+...... . .......++++++.++..+
T Consensus 3 ~~ykkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~~----~-------~~~~~~~~eelle~~~~~~ 71 (357)
T PRK12652 3 MAANRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVDP----E-------GQDELAAAEELLERVEVWA 71 (357)
T ss_pred cccCeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCccccc----c-------hhHHHHHHHHHHHHHHHHH
Confidence 368999999999999999999999999874 59999999998643210 0 1122345566677777666
Q ss_pred hh------cCCceEEEEEEc-------CCHHHHHHHHHHHcCCCEEEEcCCC
Q 044284 94 TR------RHIQCELVVLER-------QDVARALIEYVSQYGVETMLLGAPT 132 (421)
Q Consensus 94 ~~------~gV~~e~vvleg-------~dva~aIve~A~~~~idlIVmGs~g 132 (421)
.+ .|+.+++.++.+ |+|+++|++||+++++|+||||-.-
T Consensus 72 ~~~l~~~~~gV~ve~~vv~~~~~~~~~G~pae~Iv~~Aee~~aDLIVm~~~~ 123 (357)
T PRK12652 72 TEDLGDDASSVTIETALLGTDEYLFGPGDYAEVLIAYAEEHGIDRVVLDPEY 123 (357)
T ss_pred HHhhhcccCCCceEEEEEeccccccCCCCHHHHHHHHHHHcCCCEEEECCCC
Confidence 54 599999888774 6999999999999999999999763
No 15
>PRK10490 sensor protein KdpD; Provisional
Probab=99.20 E-value=1.1e-10 Score=131.79 Aligned_cols=128 Identities=12% Similarity=0.146 Sum_probs=101.0
Q ss_pred CCCEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 044284 17 REKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRR 96 (421)
Q Consensus 17 ~~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~ 96 (421)
...+|||||++++++.+++++|.+++...++.+++|||.++.... ... +.... +....++|++.
T Consensus 249 ~~eriLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~------------~~~---~~~~~-l~~~~~lA~~l 312 (895)
T PRK10490 249 TRDAILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETPRLHR------------LPE---KKRRA-ILSALRLAQEL 312 (895)
T ss_pred cCCeEEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecCCcCc------------CCH---HHHHH-HHHHHHHHHHc
Confidence 457899999999999999999999999999999999999764210 000 11222 33333577777
Q ss_pred CCceEEEEEEcCCHHHHHHHHHHHcCCCEEEEcCCCCCCCcccccccccccccccchhcccCCCcceEEEEeCCc
Q 044284 97 HIQCELVVLERQDVARALIEYVSQYGVETMLLGAPTKNGLSRSSFCRLFKASDTPGTVLKWAPDFCNVYIVSKGK 171 (421)
Q Consensus 97 gV~~e~vvleg~dva~aIve~A~~~~idlIVmGs~gr~~f~~~~~~r~~~~~sVa~~V~k~Ap~~C~V~VV~kgk 171 (421)
|.+ .+.+.|+||+++|++||+.++++.||||.++++++ |..||++..+++.+|+ .+|+||+...
T Consensus 313 Ga~--~~~~~~~dva~~i~~~A~~~~vt~IViG~s~~~~~--------~~~~s~~~~l~r~~~~-idi~iv~~~~ 376 (895)
T PRK10490 313 GAE--TATLSDPAEEKAVLRYAREHNLGKIIIGRRASRRW--------WRRESFADRLARLGPD-LDLVIVALDE 376 (895)
T ss_pred CCE--EEEEeCCCHHHHHHHHHHHhCCCEEEECCCCCCCC--------ccCCCHHHHHHHhCCC-CCEEEEeCCc
Confidence 655 56788999999999999999999999999987653 3347999999999986 5999997543
No 16
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=99.03 E-value=1.8e-09 Score=117.42 Aligned_cols=136 Identities=20% Similarity=0.190 Sum_probs=111.5
Q ss_pred CCCEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 044284 17 REKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRR 96 (421)
Q Consensus 17 ~~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~ 96 (421)
...+|||||+++++|.+.+++|..++...++.+++|||..+.... . .+.....|.....+|++.
T Consensus 247 ~~e~ilvcI~~~~~~e~liR~a~RlA~~~~a~~~av~v~~~~~~~------------~----~~~~~~~l~~~~~Lae~l 310 (890)
T COG2205 247 ARERILVCISGSPGSEKLIRRAARLASRLHAKWTAVYVETPELHR------------L----SEKEARRLHENLRLAEEL 310 (890)
T ss_pred ccceEEEEECCCCchHHHHHHHHHHHHHhCCCeEEEEEecccccc------------c----cHHHHHHHHHHHHHHHHh
Confidence 357999999999999999999999999999999999999876420 0 012233456666777765
Q ss_pred CCceEEEEEEcCCHHHHHHHHHHHcCCCEEEEcCCCCCCCcccccccccccccccchhcccCCCcceEEEEeCCccceee
Q 044284 97 HIQCELVVLERQDVARALIEYVSQYGVETMLLGAPTKNGLSRSSFCRLFKASDTPGTVLKWAPDFCNVYIVSKGKCHALR 176 (421)
Q Consensus 97 gV~~e~vvleg~dva~aIve~A~~~~idlIVmGs~gr~~f~~~~~~r~~~~~sVa~~V~k~Ap~~C~V~VV~kgk~~~~r 176 (421)
.++.+++.|+|++++|++||..++++.||||.+.++.+. +.|+ ++++..+++.+|+ ..|+||+.+...-.|
T Consensus 311 --Gae~~~l~~~dv~~~i~~ya~~~~~TkiViG~~~~~rw~-----~~~~-~~l~~~L~~~~~~-idv~ii~~~~~~~~~ 381 (890)
T COG2205 311 --GAEIVTLYGGDVAKAIARYAREHNATKIVIGRSRRSRWR-----RLFK-GSLADRLAREAPG-IDVHIVALDAPPDKR 381 (890)
T ss_pred --CCeEEEEeCCcHHHHHHHHHHHcCCeeEEeCCCcchHHH-----HHhc-ccHHHHHHhcCCC-ceEEEeeCCCCcccc
Confidence 467788899999999999999999999999999888886 6665 7999999999986 599999987776444
Q ss_pred c
Q 044284 177 S 177 (421)
Q Consensus 177 ~ 177 (421)
+
T Consensus 382 ~ 382 (890)
T COG2205 382 P 382 (890)
T ss_pred c
Confidence 4
No 17
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=98.14 E-value=8.5e-06 Score=65.62 Aligned_cols=84 Identities=20% Similarity=0.182 Sum_probs=70.0
Q ss_pred EEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhcCCce
Q 044284 21 VAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRHIQC 100 (421)
Q Consensus 21 IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~gV~~ 100 (421)
|+||++|+..|..++.||.+.. ..+..++++|+.
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~~-~~~~~~~~~~~~--------------------------------------------- 34 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRLK-SGGPEVVALVVV--------------------------------------------- 34 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHHH-hcCCCEEEEEeH---------------------------------------------
Confidence 6899999999999999999987 446677777775
Q ss_pred EEEEEEcCCHHHHHHHHHHHcCCCEEEEcCCCCCCCcccccccccccc-cccchhcccCCCcceEEE
Q 044284 101 ELVVLERQDVARALIEYVSQYGVETMLLGAPTKNGLSRSSFCRLFKAS-DTPGTVLKWAPDFCNVYI 166 (421)
Q Consensus 101 e~vvleg~dva~aIve~A~~~~idlIVmGs~gr~~f~~~~~~r~~~~~-sVa~~V~k~Ap~~C~V~V 166 (421)
.....+.+++.++++|.||+|+++..... +.+ ++ ++...+.+.++ |||+.
T Consensus 35 --------~~~~~~~~~a~~~~~~~Iv~G~~~~d~~~-----~~~-~~~~~~~~~~~~~~--~~vl~ 85 (86)
T cd01984 35 --------AFVRILKRLAAEEGADVIILGHNADDVAG-----RRL-GASANVLVVIKGAG--IPVLT 85 (86)
T ss_pred --------HHHHHHHHHHHHcCCCEEEEcCCchhhhh-----hcc-CchhhhhhcccccC--CceeC
Confidence 35667888899999999999999988877 555 35 88899999988 88874
No 18
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=97.23 E-value=0.004 Score=57.39 Aligned_cols=95 Identities=14% Similarity=0.106 Sum_probs=70.1
Q ss_pred EEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 044284 20 IVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRHIQ 99 (421)
Q Consensus 20 ~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~gV~ 99 (421)
+|+||+.|.+.|.-++.++.+.+...|..+.+|||-..... ...+....++.+|...||+
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~~~~v~~v~vd~g~~~--------------------~~~~~~~~~~~~~~~~gi~ 60 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKLKIRLIAAHVDHGLRP--------------------ESDEEAEFVQQFCKKLNIP 60 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCh--------------------hHHHHHHHHHHHHHHcCCC
Confidence 58999999999999999988877655667999999754311 1122245667778888998
Q ss_pred eEEEEEEcCC--------HH--------HHHHHHHHHcCCCEEEEcCCCCC
Q 044284 100 CELVVLERQD--------VA--------RALIEYVSQYGVETMLLGAPTKN 134 (421)
Q Consensus 100 ~e~vvleg~d--------va--------~aIve~A~~~~idlIVmGs~gr~ 134 (421)
+..+.+.... .. ..+.++|.+++++.|++|.+..-
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~r~~R~~~l~~~a~~~g~~~i~~Gh~~~D 111 (189)
T TIGR02432 61 LEIKKVDVKALAKGKKKNLEEAAREARYDFFEEIAKKHGADYILTAHHADD 111 (189)
T ss_pred EEEEEecchhhccccCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCccHH
Confidence 8766553221 12 57888999999999999999643
No 19
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=96.62 E-value=0.023 Score=51.87 Aligned_cols=95 Identities=15% Similarity=0.083 Sum_probs=67.5
Q ss_pred EEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 044284 20 IVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRHIQ 99 (421)
Q Consensus 20 ~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~gV~ 99 (421)
+|+|++.|...|.-++.++.+.....+.++.+|||-..... ...+.+..+..+|...|++
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~~~~v~~v~id~~~~~--------------------~~~~~~~~~~~~~~~~~i~ 60 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRLGLRLVAVHVDHGLRP--------------------ESDEEAAFVADLCAKLGIP 60 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCc--------------------hHHHHHHHHHHHHHHcCCc
Confidence 58999999999999999988877555678999999754321 1123345566777788988
Q ss_pred eEEEEEEcCC---H----------HHHHHHHHHHcCCCEEEEcCCCCC
Q 044284 100 CELVVLERQD---V----------ARALIEYVSQYGVETMLLGAPTKN 134 (421)
Q Consensus 100 ~e~vvleg~d---v----------a~aIve~A~~~~idlIVmGs~gr~ 134 (421)
+..+...... . -..+.++|.+++++.|++|.+...
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~r~~r~~~l~~~a~~~~~~~i~~Gh~~dD 108 (185)
T cd01992 61 LYILVVALAPKPGGNLEAAAREARYDFFAEIAKEHGADVLLTAHHADD 108 (185)
T ss_pred EEEEeeccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcHH
Confidence 8765111111 0 146778999999999999998543
No 20
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=96.53 E-value=0.029 Score=51.64 Aligned_cols=93 Identities=19% Similarity=0.141 Sum_probs=60.2
Q ss_pred EEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 044284 20 IVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRHIQ 99 (421)
Q Consensus 20 ~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~gV~ 99 (421)
+|+||+.|.+.|...+....+.....+-.+.++||-+.... ...+-......+|...||+
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~~~~~~~~~vdh~~~~--------------------~s~~~~~~v~~~~~~~~i~ 60 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRNGIKLIAVHVDHGLRE--------------------ESDEEAEFVEEICEQLGIP 60 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTTTTEEEEEEEE-STSC--------------------CHHHHHHHHHHHHHHTT-E
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCc--------------------ccchhHHHHHHHHHhcCCc
Confidence 69999999999988887777777666789999999876531 0111134466788888999
Q ss_pred eEEEEEEc-----CC---HH-----HHHHHHHHHcCCCEEEEcCCC
Q 044284 100 CELVVLER-----QD---VA-----RALIEYVSQYGVETMLLGAPT 132 (421)
Q Consensus 100 ~e~vvleg-----~d---va-----~aIve~A~~~~idlIVmGs~g 132 (421)
+..+.+.. .. .+ ..+.++|.+++++.|++|.|.
T Consensus 61 ~~~~~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~i~~GHh~ 106 (182)
T PF01171_consen 61 LYIVRIDEDRKKGSNIEECARELRYQFLREIAKEEGCNKIALGHHL 106 (182)
T ss_dssp EEEEE--CHCCTTSTCHHHHHHHHHHHHHHHHHTTT-CEEE---BH
T ss_pred eEEEEeeeeecccCCHHHHHHHHHHHHHHHhhhcccccceeecCcC
Confidence 88776652 11 11 366689999999999999984
No 21
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=95.71 E-value=0.044 Score=62.23 Aligned_cols=154 Identities=10% Similarity=0.108 Sum_probs=88.0
Q ss_pred CCCCEEEEccCCCHHHHHHHHHHHHHHhc--CCCEEEEEEEecCCC-CCC--ccccccchHHHHHHHHHHHHHHHHHHHH
Q 044284 16 GREKIVAVAIDKDKFSQHALKWAADNILS--RHQTIKLVHVIQKSH-SNN--QYSVGISEELIEQQQHDIHAMEVFLPFR 90 (421)
Q Consensus 16 ~~~~~IlVAVDgS~~S~~ALkwAid~a~~--~ga~I~LlHV~~~~~-~~~--~~~~~~~~~~~~~~~~~~~a~elL~~~r 90 (421)
+...+||+||-+.++-...+.-+--.... ..-.++++|+.+-.. ..+ +...................++++..|+
T Consensus 456 ~~elriL~cv~~~~~v~~li~Lle~s~~t~~sp~~vy~lhLveL~~r~~~~l~~h~~~~~~~~~~~~~~~~~~~i~~af~ 535 (832)
T PLN03159 456 DAELRMLVCVHTPRNVPTIINLLEASHPTKRSPICIYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFE 535 (832)
T ss_pred CCceeEEEEeccCCcHHHHHHHHHhcCCCCCCCceEEEEEEEeecCCCccceeeeecccccccccccccccccHHHHHHH
Confidence 34568999999887765555332111111 224689999986432 111 1110000000000001122456777777
Q ss_pred HHhhhc-CCceEEEEEEcC--CHHHHHHHHHHHcCCCEEEEcCCCCCCCcccc-cccccccccccchhcccCCCcceEEE
Q 044284 91 CYCTRR-HIQCELVVLERQ--DVARALIEYVSQYGVETMLLGAPTKNGLSRSS-FCRLFKASDTPGTVLKWAPDFCNVYI 166 (421)
Q Consensus 91 ~~c~~~-gV~~e~vvleg~--dva~aIve~A~~~~idlIVmGs~gr~~f~~~~-~~r~~~~~sVa~~V~k~Ap~~C~V~V 166 (421)
.+.... +|.+......+. +..+.||..|.+..+++||+|-|.+..+..-. ...-.. ..+-..|+++|| |+|-|
T Consensus 536 ~~~~~~~~v~v~~~t~vs~~~~mh~dIc~~A~d~~~slIilpfhk~~~~dg~~~~~~~~~-r~~n~~VL~~Ap--CsVgI 612 (832)
T PLN03159 536 NYEQHAGCVSVQPLTAISPYSTMHEDVCNLAEDKRVSLIIIPFHKQQTVDGGMEATNPAF-RGVNQNVLANAP--CSVGI 612 (832)
T ss_pred HHHhhcCceEEEEEEEEeCcccHHHHHHHHHHhcCCCEEEECCCCccCCCCCccccCchH-HHHHHHHHccCC--CCEEE
Confidence 776543 677665444433 89999999999999999999999654433000 000011 357799999999 88865
Q ss_pred -EeCCcc
Q 044284 167 -VSKGKC 172 (421)
Q Consensus 167 -V~kgk~ 172 (421)
|.+|..
T Consensus 613 lVDRg~~ 619 (832)
T PLN03159 613 LVDRGLS 619 (832)
T ss_pred EEeCCCC
Confidence 556643
No 22
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=95.12 E-value=0.21 Score=45.32 Aligned_cols=93 Identities=14% Similarity=0.040 Sum_probs=62.5
Q ss_pred EEEEccCCCHHHHHHHHHHHHHHhcC--CCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 044284 20 IVAVAIDKDKFSQHALKWAADNILSR--HQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRH 97 (421)
Q Consensus 20 ~IlVAVDgS~~S~~ALkwAid~a~~~--ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~g 97 (421)
+|+|++.|...|.-++.++....... +-.++++||-...... ..+....++.+|...|
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~d~~~~~~--------------------~~~~~~~~~~~~~~~~ 60 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVDEGIPGY--------------------RDESLEVVERLAEELG 60 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEEEECCCCCC--------------------cHHHHHHHHHHHHHcC
Confidence 58999999999998888877765433 5579999998653210 0011233455677778
Q ss_pred CceEEEEEEcC---------------------CHHHHHHHHHHHcCCCEEEEcCCC
Q 044284 98 IQCELVVLERQ---------------------DVARALIEYVSQYGVETMLLGAPT 132 (421)
Q Consensus 98 V~~e~vvleg~---------------------dva~aIve~A~~~~idlIVmGs~g 132 (421)
+.+..+.+... -.-..+.++|.+++++.|+.|.+.
T Consensus 61 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~r~~~l~~~a~~~g~~~l~~Gh~~ 116 (185)
T cd01993 61 IELEIVSFKEEYTDDIEVKKRGGKSPCSLCGVLRRGLLNKIAKELGADKLATGHNL 116 (185)
T ss_pred CceEEEehhhhcchhhhhhccCCCCCCCccHHHHHHHHHHHHHHcCCCEEEEcCCh
Confidence 87766544310 012456788999999999999985
No 23
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=94.78 E-value=0.36 Score=47.08 Aligned_cols=94 Identities=15% Similarity=0.081 Sum_probs=63.6
Q ss_pred CCCEEEEccCCCHHHHHHHHHHHHHHhcC--CCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhh
Q 044284 17 REKIVAVAIDKDKFSQHALKWAADNILSR--HQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCT 94 (421)
Q Consensus 17 ~~~~IlVAVDgS~~S~~ALkwAid~a~~~--ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~ 94 (421)
+..+|+||+.|...|...+.++.++.... +-+|..|||-..... +. ++ ..+.+|.
T Consensus 28 ~~~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd~g~~~-------------~~----~~------~~~~~~~ 84 (258)
T PRK10696 28 EGDRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLDQKQPG-------------FP----EH------VLPEYLE 84 (258)
T ss_pred CCCEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEecCCCCC-------------CC----HH------HHHHHHH
Confidence 35699999999999988887776654332 347888888654211 00 01 1367888
Q ss_pred hcCCceEEEEEEcC-----------CH--------HHHHHHHHHHcCCCEEEEcCCCC
Q 044284 95 RRHIQCELVVLERQ-----------DV--------ARALIEYVSQYGVETMLLGAPTK 133 (421)
Q Consensus 95 ~~gV~~e~vvleg~-----------dv--------a~aIve~A~~~~idlIVmGs~gr 133 (421)
..||++..+-++.. .+ -..+.++|.+++++.|++|.|.-
T Consensus 85 ~lgI~~~v~~~~~~~~~~~~~~~~~~~c~~c~~~R~~~l~~~a~~~g~~~Ia~GH~~d 142 (258)
T PRK10696 85 SLGVPYHIEEQDTYSIVKEKIPEGKTTCSLCSRLRRGILYRTARELGATKIALGHHRD 142 (258)
T ss_pred HhCCCEEEEEecchhhhhhhhccCCChhHHHHHHHHHHHHHHHHHcCCCEEEEcCchH
Confidence 99999876544210 11 13566889999999999999964
No 24
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=93.32 E-value=0.58 Score=45.54 Aligned_cols=89 Identities=16% Similarity=0.131 Sum_probs=59.4
Q ss_pred CCEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 044284 18 EKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRH 97 (421)
Q Consensus 18 ~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~g 97 (421)
+.+|+||+.|...|--++.++.+. |..++.||+..+... .. -+..++.+|...|
T Consensus 12 ~~~vlVa~SGGvDSs~ll~la~~~----g~~v~av~~~~~~~~---------------~~-------e~~~a~~~a~~lg 65 (252)
T TIGR00268 12 FKKVLIAYSGGVDSSLLAAVCSDA----GTEVLAITVVSPSIS---------------PR-------ELEDAIIIAKEIG 65 (252)
T ss_pred cCCEEEEecCcHHHHHHHHHHHHh----CCCEEEEEecCCCCC---------------HH-------HHHHHHHHHHHcC
Confidence 578999999999999888888764 667999999643210 00 1223355566667
Q ss_pred CceEEEEEEc-----------------CCHHHHHHHHHHHcCCCEEEEcCCC
Q 044284 98 IQCELVVLER-----------------QDVARALIEYVSQYGVETMLLGAPT 132 (421)
Q Consensus 98 V~~e~vvleg-----------------~dva~aIve~A~~~~idlIVmGs~g 132 (421)
|+.+.+-+.. ......+.++|.+++++.|+.|.+.
T Consensus 66 i~~~ii~~~~~~~~~~~n~~~~c~~ck~~~~~~l~~~A~~~g~~~I~~G~n~ 117 (252)
T TIGR00268 66 VNHEFVKIDKMINPFRANVEERCYFCKKMVLSILVKEAEKRGYDVVVDGTNA 117 (252)
T ss_pred CCEEEEEcHHHHHHHHhCCCcccchhhHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 7665443311 0123356678999999999999875
No 25
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=93.28 E-value=0.65 Score=45.66 Aligned_cols=95 Identities=14% Similarity=0.055 Sum_probs=61.4
Q ss_pred CEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 044284 19 KIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRHI 98 (421)
Q Consensus 19 ~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~gV 98 (421)
.+|+||+.|.+.|..++....+.... -.+.++||-+..... ..........+|...|+
T Consensus 22 ~~ilVavSGGkDS~~ll~~L~~l~~~--~~~~a~~Vd~~~~~~--------------------~~~~~~~~~~~~~~~~~ 79 (298)
T COG0037 22 YKILVAVSGGKDSLALLHLLKELGRR--IEVEAVHVDHGLRGY--------------------SDQEAELVEKLCEKLGI 79 (298)
T ss_pred CeEEEEeCCChHHHHHHHHHHHhccC--ceEEEEEecCCCCCc--------------------cchHHHHHHHHHHHhCC
Confidence 69999999999998887666555433 679999998865420 01112334456666666
Q ss_pred ceEEEEEEcCCH-----------------HHHHHHHHHHcCCCEEEEcCCCCCC
Q 044284 99 QCELVVLERQDV-----------------ARALIEYVSQYGVETMLLGAPTKNG 135 (421)
Q Consensus 99 ~~e~vvleg~dv-----------------a~aIve~A~~~~idlIVmGs~gr~~ 135 (421)
.....-+...-. -..+-++|.+.|+|.|++|-|...-
T Consensus 80 ~~~v~~~~~~~~~~~~~~~~~c~~c~~~R~~~l~~~a~~~g~~~i~tgH~~dD~ 133 (298)
T COG0037 80 PLIVERVTDDLGRETLDGKSICAACRRLRRGLLYKIAKELGADKIATGHHLDDQ 133 (298)
T ss_pred ceEEEEEEeeccccccCCCChhHHHHHHHHHHHHHHHHHcCCCeEEeccCcHHH
Confidence 443333322111 1235578899999999999996543
No 26
>PRK13820 argininosuccinate synthase; Provisional
Probab=93.11 E-value=0.81 Score=47.74 Aligned_cols=92 Identities=12% Similarity=0.029 Sum_probs=60.8
Q ss_pred CCCEEEEccCCCHHHHHHHHHHHHHHhcCCC-EEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhh
Q 044284 17 REKIVAVAIDKDKFSQHALKWAADNILSRHQ-TIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTR 95 (421)
Q Consensus 17 ~~~~IlVAVDgS~~S~~ALkwAid~a~~~ga-~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~ 95 (421)
|+.+|+||+.|...|.-++.|+.+.+ |- .|+.+|+-..... . -+..++.+|..
T Consensus 1 ~~~kVvvA~SGGvDSsvll~lL~e~~---g~~~Viav~vd~g~~~--------~---------------e~~~a~~~a~~ 54 (394)
T PRK13820 1 MMKKVVLAYSGGLDTSVCVPLLKEKY---GYDEVITVTVDVGQPE--------E---------------EIKEAEEKAKK 54 (394)
T ss_pred CCCeEEEEEeCcHHHHHHHHHHHHhc---CCCEEEEEEEECCCCh--------H---------------HHHHHHHHHHH
Confidence 46799999999999999999976543 53 8999999753210 0 01223344444
Q ss_pred cCCceEEEEEE----------------------------cCCHHHHHHHHHHHcCCCEEEEcCCCCC
Q 044284 96 RHIQCELVVLE----------------------------RQDVARALIEYVSQYGVETMLLGAPTKN 134 (421)
Q Consensus 96 ~gV~~e~vvle----------------------------g~dva~aIve~A~~~~idlIVmGs~gr~ 134 (421)
.|+++..+-+. -.-+.+.++++|++.+++.|+.|+.+++
T Consensus 55 lGi~~~vvd~~eef~~~~i~~~i~~n~~~~gYpl~~~~cR~~i~~~l~e~A~e~G~~~IA~G~t~~g 121 (394)
T PRK13820 55 LGDKHYTIDAKEEFAKDYIFPAIKANALYEGYPLGTALARPLIAEKIVEVAEKEGASAIAHGCTGKG 121 (394)
T ss_pred cCCCEEEEeCHHHHHHHHHHHHHHhCccccCCcCcHHHHHHHHHHHHHHHHHHcCCCEEEECCCCCc
Confidence 44443332111 0124567899999999999999997763
No 27
>PRK12342 hypothetical protein; Provisional
Probab=92.22 E-value=0.71 Score=45.34 Aligned_cols=92 Identities=15% Similarity=0.109 Sum_probs=61.8
Q ss_pred ccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhcCCceEEE
Q 044284 24 AIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRHIQCELV 103 (421)
Q Consensus 24 AVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~gV~~e~v 103 (421)
+..-++...+||+.|+.+- ..|.+|++|++-|+.. ....++..+..+-...+|-+..-
T Consensus 30 ~~~iNp~D~~AlE~AlrLk-~~g~~Vtvls~Gp~~a---------------------~~~~l~r~alamGaD~avli~d~ 87 (254)
T PRK12342 30 EAKISQFDLNAIEAASQLA-TDGDEIAALTVGGSLL---------------------QNSKVRKDVLSRGPHSLYLVQDA 87 (254)
T ss_pred CccCChhhHHHHHHHHHHh-hcCCEEEEEEeCCChH---------------------hHHHHHHHHHHcCCCEEEEEecC
Confidence 3345788899999999998 6789999999987631 11223343433333333333322
Q ss_pred EEEcCCH---HHHHHHHHHHcCCCEEEEcCCCCCCCc
Q 044284 104 VLERQDV---ARALIEYVSQYGVETMLLGAPTKNGLS 137 (421)
Q Consensus 104 vleg~dv---a~aIve~A~~~~idlIVmGs~gr~~f~ 137 (421)
.+.|.|+ +.+|..++++.++|+|+.|..+--+-.
T Consensus 88 ~~~g~D~~ata~~La~~i~~~~~DLVl~G~~s~D~~t 124 (254)
T PRK12342 88 QLEHALPLDTAKALAAAIEKIGFDLLLFGEGSGDLYA 124 (254)
T ss_pred ccCCCCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCC
Confidence 2334577 899999999999999999987654443
No 28
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=91.73 E-value=1.3 Score=41.19 Aligned_cols=89 Identities=20% Similarity=0.204 Sum_probs=59.1
Q ss_pred EEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhcCCce
Q 044284 21 VAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRHIQC 100 (421)
Q Consensus 21 IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~gV~~ 100 (421)
|+|++.|...|..++.++.+.. +..++.|||...... .+-...++.+|...|++.
T Consensus 1 vvva~SGG~DS~~ll~ll~~~~---~~~v~~v~vd~g~~~----------------------~~~~~~~~~~a~~lgi~~ 55 (202)
T cd01990 1 VAVAFSGGVDSTLLLKAAVDAL---GDRVLAVTATSPLFP----------------------RRELEEAKRLAKEIGIRH 55 (202)
T ss_pred CEEEccCCHHHHHHHHHHHHHh---CCcEEEEEeCCCCCC----------------------HHHHHHHHHHHHHcCCcE
Confidence 6899999999999988887754 336889999754310 011334455677777776
Q ss_pred EEEEEEc------------------CCHHHHHHHHHHHcCCCEEEEcCCCCC
Q 044284 101 ELVVLER------------------QDVARALIEYVSQYGVETMLLGAPTKN 134 (421)
Q Consensus 101 e~vvleg------------------~dva~aIve~A~~~~idlIVmGs~gr~ 134 (421)
..+-+.. .-....+.++|.+++++.|+.|.+...
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~a~~~g~~~I~~G~~~dD 107 (202)
T cd01990 56 EVIETDELDDPEFAKNPPDRCYLCKKALYEALKEIAEELGLDVVLDGTNADD 107 (202)
T ss_pred EEEeCCccccHHHhcCCCCccchhHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 6543320 012235667899999999999988543
No 29
>PLN00200 argininosuccinate synthase; Provisional
Probab=91.38 E-value=2.3 Score=44.56 Aligned_cols=94 Identities=16% Similarity=0.158 Sum_probs=62.0
Q ss_pred CCCCEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhh
Q 044284 16 GREKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTR 95 (421)
Q Consensus 16 ~~~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~ 95 (421)
+|..+|+|++.|.-.|.-++.|+.+.+ |..|+.+|+-..... +-+..++..|..
T Consensus 3 ~~~~kVvva~SGGlDSsvla~~L~e~~---G~eViav~id~Gq~~-----------------------~el~~a~~~A~~ 56 (404)
T PLN00200 3 GKLNKVVLAYSGGLDTSVILKWLRENY---GCEVVCFTADVGQGI-----------------------EELEGLEAKAKA 56 (404)
T ss_pred CCCCeEEEEEeCCHHHHHHHHHHHHhh---CCeEEEEEEECCCCh-----------------------HHHHHHHHHHHH
Confidence 566799999999999999999997743 678999998754210 002223333333
Q ss_pred cCCce-EEEE------------------------EEcC-----CHHHHHHHHHHHcCCCEEEEcCCCCCC
Q 044284 96 RHIQC-ELVV------------------------LERQ-----DVARALIEYVSQYGVETMLLGAPTKNG 135 (421)
Q Consensus 96 ~gV~~-e~vv------------------------leg~-----dva~aIve~A~~~~idlIVmGs~gr~~ 135 (421)
.|+.- ..+- .-+. -+++.|+++|++.+++.|+=|+.|+|.
T Consensus 57 lGi~~~~v~dl~~ef~~~~i~p~i~~Na~ye~~Y~~~tsl~Rp~i~~~lv~~A~~~G~~~VahG~tgkGn 126 (404)
T PLN00200 57 SGAKQLVVKDLREEFVRDYIFPCLRANAIYEGKYLLGTSMARPLIAKAMVDIAKEVGADAVAHGATGKGN 126 (404)
T ss_pred cCCCEEEEEeCHHHHHHhhcCHHHHcCCcccceeccccchhhHHHHHHHHHHHHHcCCCEEEeCCcCCCC
Confidence 33321 1110 0011 357889999999999999999998753
No 30
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=89.40 E-value=20 Score=34.17 Aligned_cols=78 Identities=21% Similarity=0.430 Sum_probs=58.5
Q ss_pred CCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hHHhHHHhhhhhhhhhchh---hhHHHHHHHHHH
Q 044284 280 SQNMEDVEDDVKRLKMELKQTMDMYNAACKEALAAKQKAVEL----EKWKMKEEKRLKETQMGEE---RGKAKIKAAIEA 352 (421)
Q Consensus 280 s~~~~~~eaEm~rLrlELk~tm~my~~AckEa~~Akqk~~eL----~~~~~EE~~k~eea~~~eE---~EKak~~aA~ea 352 (421)
-...+..|.+++..|.++++...-|..|...--+.++-+++| +.|--.+-.|+=+.--.+- .+-+..+++.++
T Consensus 38 K~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqRK~sWs~~DleRFT~Lyr~dH~~e~~e~~ak~~l~~ 117 (207)
T PF05546_consen 38 KKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQRKHSWSPADLERFTELYRNDHENEQAEEEAKEALEE 117 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 345688899999999999999999999999999999999998 4456666666666554444 555556666666
Q ss_pred HHHHH
Q 044284 353 AEAAQ 357 (421)
Q Consensus 353 aE~ak 357 (421)
||...
T Consensus 118 aE~~~ 122 (207)
T PF05546_consen 118 AEEKV 122 (207)
T ss_pred HHHHH
Confidence 65543
No 31
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=89.09 E-value=1.6 Score=43.07 Aligned_cols=90 Identities=18% Similarity=0.152 Sum_probs=60.4
Q ss_pred EccCCCHHHHHHHHHHHHHHh-cCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhcCCceE
Q 044284 23 VAIDKDKFSQHALKWAADNIL-SRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRHIQCE 101 (421)
Q Consensus 23 VAVDgS~~S~~ALkwAid~a~-~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~gV~~e 101 (421)
|+..-++...+|+..|+.+-- ..|.+|++||+-|+. +++.+..+..+-.+.+|-..
T Consensus 31 v~~~in~~D~~AvEeAlrLke~~~~~eV~vlt~Gp~~-----------------------a~~~lr~aLAmGaDraili~ 87 (260)
T COG2086 31 VPLSINPFDLNAVEEALRLKEKGYGGEVTVLTMGPPQ-----------------------AEEALREALAMGADRAILIT 87 (260)
T ss_pred CCcccChhhHHHHHHHHHhhccCCCceEEEEEecchh-----------------------hHHHHHHHHhcCCCeEEEEe
Confidence 455556788999999999987 578999999997653 33334443333223333332
Q ss_pred EEEEEcC---CHHHHHHHHHHHcCCCEEEEcCCCCCC
Q 044284 102 LVVLERQ---DVARALIEYVSQYGVETMLLGAPTKNG 135 (421)
Q Consensus 102 ~vvleg~---dva~aIve~A~~~~idlIVmGs~gr~~ 135 (421)
+.-..+. ..+.+|..++++.+.|+|++|...-.+
T Consensus 88 d~~~~~~d~~~ta~~Laa~~~~~~~~LVl~G~qa~D~ 124 (260)
T COG2086 88 DRAFAGADPLATAKALAAAVKKIGPDLVLTGKQAIDG 124 (260)
T ss_pred cccccCccHHHHHHHHHHHHHhcCCCEEEEecccccC
Confidence 2222233 358899999999999999999876443
No 32
>PTZ00121 MAEBL; Provisional
Probab=88.84 E-value=5.8 Score=47.25 Aligned_cols=13 Identities=15% Similarity=0.486 Sum_probs=8.8
Q ss_pred CEEEEccCCCHHH
Q 044284 19 KIVAVAIDKDKFS 31 (421)
Q Consensus 19 ~~IlVAVDgS~~S 31 (421)
++|++-.++++.+
T Consensus 95 Ktf~m~l~~~eyn 107 (2084)
T PTZ00121 95 KTFLMDFEDDEYN 107 (2084)
T ss_pred ceEEEecccchhh
Confidence 5677777777665
No 33
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=87.40 E-value=3.1 Score=40.91 Aligned_cols=91 Identities=13% Similarity=0.028 Sum_probs=59.1
Q ss_pred cCCCHHHHHHHHHHHHHHhcCC-CEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhcCCceEEE
Q 044284 25 IDKDKFSQHALKWAADNILSRH-QTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRHIQCELV 103 (421)
Q Consensus 25 VDgS~~S~~ALkwAid~a~~~g-a~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~gV~~e~v 103 (421)
.--++...+||+.|+.+--..+ .+|++|+|-|+.. ...+.|..+..+-..++|.+..-
T Consensus 32 ~~iN~~D~~AlE~Alrlke~~~g~~Vtvvs~Gp~~a---------------------~~~~~lr~aLAmGaD~avli~d~ 90 (256)
T PRK03359 32 AKISQYDLNAIEAACQLKQQAAEAQVTALSVGGKAL---------------------TNAKGRKDVLSRGPDELIVVIDD 90 (256)
T ss_pred cccChhhHHHHHHHHHHhhhcCCCEEEEEEECCcch---------------------hhHHHHHHHHHcCCCEEEEEecC
Confidence 3357788999999999887654 7999999987642 12233444443333333322211
Q ss_pred EEEcCC---HHHHHHHHHHHcCCCEEEEcCCCCCCC
Q 044284 104 VLERQD---VARALIEYVSQYGVETMLLGAPTKNGL 136 (421)
Q Consensus 104 vleg~d---va~aIve~A~~~~idlIVmGs~gr~~f 136 (421)
-+.|.| .+.+|..++++.++|+|+.|..+-.+-
T Consensus 91 ~~~g~D~~~tA~~La~ai~~~~~DLVl~G~~s~D~~ 126 (256)
T PRK03359 91 QFEQALPQQTASALAAAAQKAGFDLILCGDGSSDLY 126 (256)
T ss_pred cccCcCHHHHHHHHHHHHHHhCCCEEEEcCccccCC
Confidence 112223 478899999999999999998775543
No 34
>PLN03086 PRLI-interacting factor K; Provisional
Probab=87.13 E-value=1.6 Score=47.43 Aligned_cols=32 Identities=28% Similarity=0.437 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044284 341 RGKAKIKAAIEAAEAAQKIAKLEVQKRVNAEA 372 (421)
Q Consensus 341 ~EKak~~aA~eaaE~ak~~ae~EaqkR~~aE~ 372 (421)
.|-+|.+.|+|++..++|+-..|||.+.++.|
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (567)
T PLN03086 35 EEAAKQREAIEAAQRSRRLDAIEAQIKADQQM 66 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678889999999999999999888755544
No 35
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=86.66 E-value=12 Score=34.07 Aligned_cols=35 Identities=11% Similarity=-0.042 Sum_probs=29.9
Q ss_pred EEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCC
Q 044284 20 IVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKS 58 (421)
Q Consensus 20 ~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~ 58 (421)
+|+|++.|...|.-++.|+.+ .|..++.||+-.+.
T Consensus 1 ~vlv~~SGG~DS~~la~ll~~----~g~~v~av~~d~g~ 35 (177)
T cd01712 1 KALALLSGGIDSPVAAWLLMK----RGIEVDALHFNSGP 35 (177)
T ss_pred CEEEEecCChhHHHHHHHHHH----cCCeEEEEEEeCCC
Confidence 489999999999999988876 37889999998664
No 36
>KOG2417 consensus Predicted G-protein coupled receptor [Signal transduction mechanisms]
Probab=86.31 E-value=17 Score=37.48 Aligned_cols=17 Identities=47% Similarity=0.638 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 044284 288 DDVKRLKMELKQTMDMY 304 (421)
Q Consensus 288 aEm~rLrlELk~tm~my 304 (421)
.++-.|-..|.|||||.
T Consensus 186 ~di~~lErrL~qtmdmi 202 (462)
T KOG2417|consen 186 TDIIQLERRLAQTMDMI 202 (462)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56888999999999997
No 37
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.
Probab=86.01 E-value=7.8 Score=34.13 Aligned_cols=35 Identities=17% Similarity=-0.005 Sum_probs=27.0
Q ss_pred EEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecC
Q 044284 20 IVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQK 57 (421)
Q Consensus 20 ~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~ 57 (421)
.|+|++.|...|-.++-++.+.. +-.+.++||-..
T Consensus 3 d~~v~lSGG~DSs~ll~l~~~~~---~~~v~~v~~~~g 37 (154)
T cd01996 3 DCIIGVSGGKDSSYALYLLKEKY---GLNPLAVTVDNG 37 (154)
T ss_pred CEEEECCCchhHHHHHHHHHHHh---CCceEEEEeCCC
Confidence 58999999999999998887653 226777888643
No 38
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=85.97 E-value=5.2 Score=42.26 Aligned_cols=69 Identities=13% Similarity=0.068 Sum_probs=47.3
Q ss_pred CCEEEEccCCCHHHHHHHHHHHHHH-hcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 044284 18 EKIVAVAIDKDKFSQHALKWAADNI-LSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRR 96 (421)
Q Consensus 18 ~~~IlVAVDgS~~S~~ALkwAid~a-~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~ 96 (421)
..+|+||+.|...|.-.+....... ...|-.|+++||-..... ...+...-.+.+|...
T Consensus 15 ~~~ilvavSGG~DS~~Ll~~l~~~~~~~~~~~l~a~hvnhglr~--------------------~s~~~~~~~~~~~~~l 74 (436)
T PRK10660 15 SRQILVAFSGGLDSTVLLHLLVQWRTENPGVTLRAIHVHHGLSP--------------------NADSWVKHCEQVCQQW 74 (436)
T ss_pred CCeEEEEecCCHHHHHHHHHHHHHHHhcCCCeEEEEEEeCCCCc--------------------chHHHHHHHHHHHHHc
Confidence 4789999999999987666655543 234678999999865421 1111223467789999
Q ss_pred CCceEEEEEE
Q 044284 97 HIQCELVVLE 106 (421)
Q Consensus 97 gV~~e~vvle 106 (421)
||++..+-+.
T Consensus 75 ~i~~~~~~~~ 84 (436)
T PRK10660 75 QVPLVVERVQ 84 (436)
T ss_pred CCcEEEEEEe
Confidence 9998876554
No 39
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=85.55 E-value=4.8 Score=40.51 Aligned_cols=95 Identities=13% Similarity=0.032 Sum_probs=62.2
Q ss_pred CCEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 044284 18 EKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRH 97 (421)
Q Consensus 18 ~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~g 97 (421)
+.+|+|++.|.+.|.-.|..|.+.+...+..+.+|||-+...++ ++ +.-...+|++.|
T Consensus 27 f~~~vv~~SGGKDS~VLL~La~ka~~~~~~~~~vl~iDTG~~Fp-------------------Et---~ef~d~~a~~~g 84 (301)
T PRK05253 27 FENPVMLYSIGKDSSVMLHLARKAFYPGKLPFPLLHVDTGWKFP-------------------EM---IEFRDRRAKELG 84 (301)
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhhcccCCCeeEEEEeCCCCCH-------------------HH---HHHHHHHHHHhC
Confidence 57899999999999988888877665435578899997654320 11 111233556667
Q ss_pred CceEEEEEE-----c-----CCH--------HHHHHHHHHHcCCCEEEEcCCCCC
Q 044284 98 IQCELVVLE-----R-----QDV--------ARALIEYVSQYGVETMLLGAPTKN 134 (421)
Q Consensus 98 V~~e~vvle-----g-----~dv--------a~aIve~A~~~~idlIVmGs~gr~ 134 (421)
+++..+... | .++ ...+.+++.++++|.++.|.+.--
T Consensus 85 l~l~v~~~~~~i~~g~~~~~~~~~~cC~~lK~~pL~~al~e~g~da~~~G~RrDE 139 (301)
T PRK05253 85 LELIVHSNPEGIARGINPFRHGSAKHTNAMKTEGLKQALEKYGFDAAFGGARRDE 139 (301)
T ss_pred CCEEEEeChHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEEeccccch
Confidence 776544221 1 011 145678888999999999998654
No 40
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=85.54 E-value=8.2 Score=39.84 Aligned_cols=38 Identities=18% Similarity=0.099 Sum_probs=30.6
Q ss_pred CCCCEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecC
Q 044284 16 GREKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQK 57 (421)
Q Consensus 16 ~~~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~ 57 (421)
|...+++|++.|...|--|+-++.+ .|..++.||+..+
T Consensus 170 g~~~kvlvllSGGiDS~vaa~ll~k----rG~~V~av~~~~~ 207 (371)
T TIGR00342 170 GTQGKVLALLSGGIDSPVAAFMMMK----RGCRVVAVHFFNE 207 (371)
T ss_pred CcCCeEEEEecCCchHHHHHHHHHH----cCCeEEEEEEeCC
Confidence 3468999999999888888866644 4888999999843
No 41
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=85.15 E-value=8.4 Score=34.60 Aligned_cols=86 Identities=12% Similarity=0.182 Sum_probs=51.8
Q ss_pred EEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 044284 20 IVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRHIQ 99 (421)
Q Consensus 20 ~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~gV~ 99 (421)
+|+|++.|...|--++.++.+ .+..++++|+...... .. +. +.+++ +|...| +
T Consensus 1 kvlv~~SGG~DS~~~~~~~~~----~~~~v~~~~~~~~~~~-------~~-------~~-~~~~~-------~~~~~g-~ 53 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKK----EGYEVHALSFDYGQRH-------AK-------EE-EAAKL-------IAEKLG-P 53 (169)
T ss_pred CEEEEecCcHHHHHHHHHHHH----cCCcEEEEEEECCCCC-------hh-------HH-HHHHH-------HHHHHC-C
Confidence 589999999999998877765 3557888999643211 00 00 11222 222222 1
Q ss_pred eEEEEEEcCCH--HHHHHHHHHHcCCCEEEEcCCCCC
Q 044284 100 CELVVLERQDV--ARALIEYVSQYGVETMLLGAPTKN 134 (421)
Q Consensus 100 ~e~vvleg~dv--a~aIve~A~~~~idlIVmGs~gr~ 134 (421)
.. .+...+. ...+.++|.+++++.||+|.+...
T Consensus 54 ~~--~~~~~~~~~~~~l~~~a~~~g~~~i~~G~~~~d 88 (169)
T cd01995 54 ST--YVPARNLIFLSIAAAYAEALGAEAIIIGVNAED 88 (169)
T ss_pred CE--EEeCcCHHHHHHHHHHHHHCCCCEEEEeeccCc
Confidence 11 2222232 245678899999999999998643
No 42
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=85.05 E-value=12 Score=42.11 Aligned_cols=16 Identities=44% Similarity=0.762 Sum_probs=12.9
Q ss_pred hhcHHHHHHHHHHHHH
Q 044284 283 MEDVEDDVKRLKMELK 298 (421)
Q Consensus 283 ~~~~eaEm~rLrlELk 298 (421)
..-+|+|++|||-||+
T Consensus 420 ~~rLE~dvkkLraeLq 435 (697)
T PF09726_consen 420 ISRLEADVKKLRAELQ 435 (697)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4679999999996644
No 43
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=84.89 E-value=6.1 Score=41.31 Aligned_cols=34 Identities=15% Similarity=0.100 Sum_probs=29.0
Q ss_pred EEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecC
Q 044284 20 IVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQK 57 (421)
Q Consensus 20 ~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~ 57 (421)
+|+||+.|...|.-++.|+.+. |..|+.+|+-..
T Consensus 1 kVvla~SGGlDSsvll~~l~e~----g~~V~av~id~G 34 (394)
T TIGR00032 1 KVVLAYSGGLDTSVCLKWLREK----GYEVIAYTADVG 34 (394)
T ss_pred CEEEEEcCCHHHHHHHHHHHHc----CCEEEEEEEecC
Confidence 5899999999999999998764 778999999754
No 44
>PRK04527 argininosuccinate synthase; Provisional
Probab=83.52 E-value=11 Score=39.50 Aligned_cols=104 Identities=8% Similarity=-0.009 Sum_probs=58.5
Q ss_pred CCEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHH-----------HHHHHHHHH
Q 044284 18 EKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQ-----------HDIHAMEVF 86 (421)
Q Consensus 18 ~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~a~elL 86 (421)
..+|+||..|.-.|--++.|+.+ .|..++.|++.-+..... ..+........ .+...++++
T Consensus 2 ~~kVvVA~SGGvDSSvla~~l~e----~G~~Viavt~d~gq~~~~----El~~a~~~A~~lG~~~~~viD~~eef~e~vi 73 (400)
T PRK04527 2 SKDIVLAFSGGLDTSFCIPYLQE----RGYAVHTVFADTGGVDAE----ERDFIEKRAAELGAASHVTVDGGPAIWEGFV 73 (400)
T ss_pred CCcEEEEEcCChHHHHHHHHHHH----cCCcEEEEEEEeCCCCHH----HHHHHHHHHHHcCCCeEEEecCHHHHHHHHH
Confidence 46899999999888899999776 377899999865431100 00000000000 011223344
Q ss_pred HHHHHH--hhhc--CCceEEEEEEcCCHHHHHHHHHHHcCCCEEEEcCCCC
Q 044284 87 LPFRCY--CTRR--HIQCELVVLERQDVARALIEYVSQYGVETMLLGAPTK 133 (421)
Q Consensus 87 ~~~r~~--c~~~--gV~~e~vvleg~dva~aIve~A~~~~idlIVmGs~gr 133 (421)
.|+... ..+. -..|-..- =..+.++++|.+.+++.|+-|+.|+
T Consensus 74 ~p~i~aNa~y~G~yPl~~~nR~----~~~~~l~e~A~~~G~~~IA~G~tgk 120 (400)
T PRK04527 74 KPLVWAGEGYQGQYPLLVSDRY----LIVDAALKRAEELGTRIIAHGCTGM 120 (400)
T ss_pred HHHHhcchhhcCCCCCccccHH----HHHHHHHHHHHHCCCCEEEecCcCC
Confidence 443311 0000 00000011 1567899999999999999999977
No 45
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=83.40 E-value=9.8 Score=43.58 Aligned_cols=113 Identities=15% Similarity=0.087 Sum_probs=65.5
Q ss_pred CCEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCc-------ccc-ccchHHHHHHHHHHHHHHHHHHH
Q 044284 18 EKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQ-------YSV-GISEELIEQQQHDIHAMEVFLPF 89 (421)
Q Consensus 18 ~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~-------~~~-~~~~~~~~~~~~~~~a~elL~~~ 89 (421)
..+|++..=|.+.-+.||.+|.+.+..++-.+++||..+....... +.. ............++.-++++..|
T Consensus 630 ~~~v~~~F~GG~DDREALa~a~rma~~p~v~lTVirf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~D~~~~~ef 709 (832)
T PLN03159 630 SHHVAVLFFGGPDDREALAYAWRMSEHPGITLTVMRFIPGEDAAPTASQPASSPSDPRIPTVETDGKKERQLDEEYINEF 709 (832)
T ss_pred ceeEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEEcccccccccccccccccccccccccccchhHHHHHHHHHHHH
Confidence 3488888877777799999999999888889999998865321100 000 00000000111112234567777
Q ss_pred HHHhh-hcCCceEEEEEEcC-CHHHHHHHHHHHcCCCEEEEcCCC
Q 044284 90 RCYCT-RRHIQCELVVLERQ-DVARALIEYVSQYGVETMLLGAPT 132 (421)
Q Consensus 90 r~~c~-~~gV~~e~vvleg~-dva~aIve~A~~~~idlIVmGs~g 132 (421)
+.... ...|.+.+.++.++ +...+|-.. .++.|++|+|.+.
T Consensus 710 ~~~~~~~~~v~y~E~~V~~~~e~~~~l~~~--~~~ydL~iVGr~~ 752 (832)
T PLN03159 710 RARNAGNESIVYTEKVVSNGEETVAAIRSM--DSAHDLFIVGRGQ 752 (832)
T ss_pred HHhcCCCCceEEEEEecCCHHHHHHHHHHh--hccCcEEEEecCC
Confidence 66543 34677887777542 222222222 2248999999853
No 46
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=82.76 E-value=8.2 Score=31.83 Aligned_cols=34 Identities=24% Similarity=0.015 Sum_probs=27.0
Q ss_pred EEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCC
Q 044284 21 VAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKS 58 (421)
Q Consensus 21 IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~ 58 (421)
|+|++.|...|.-.+.++.+. +..+.++||.+..
T Consensus 1 v~v~~SGG~DS~~ll~~l~~~----~~~~~~~~~~~~~ 34 (103)
T cd01986 1 VLVAFSGGKDSSVAAALLKKL----GYQVIAVTVDHGI 34 (103)
T ss_pred CEEEEeCcHHHHHHHHHHHHh----CCCEEEEEEcCCC
Confidence 689999999998888777664 3369999997664
No 47
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=82.70 E-value=13 Score=34.75 Aligned_cols=92 Identities=15% Similarity=0.103 Sum_probs=56.2
Q ss_pred EEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 044284 20 IVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRHIQ 99 (421)
Q Consensus 20 ~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~gV~ 99 (421)
+|+|++.|.+.|-.|+.+|.+ .|..++.|++..+....... + +.. -+...+..|+..||+
T Consensus 1 kv~v~~SGGkDS~~al~~a~~----~G~~v~~l~~~~~~~~~~~~---------~-h~~------~~e~~~~~A~~lgip 60 (194)
T cd01994 1 KVVALISGGKDSCYALYRALE----EGHEVVALLNLTPEEGSSMM---------Y-HTV------NHELLELQAEAMGIP 60 (194)
T ss_pred CEEEEecCCHHHHHHHHHHHH----cCCEEEEEEEEecCCCCccc---------c-ccc------CHHHHHHHHHHcCCc
Confidence 478999999999999999888 36677777766443211000 0 000 122344556667888
Q ss_pred eEEEEEEc------CCHHHHHHHHHHHcCCCEEEEcCCC
Q 044284 100 CELVVLER------QDVARALIEYVSQYGVETMLLGAPT 132 (421)
Q Consensus 100 ~e~vvleg------~dva~aIve~A~~~~idlIVmGs~g 132 (421)
...+-+.+ .+..+.|.+.+.+ +++.||-|+--
T Consensus 61 l~~i~~~~~~e~~~~~l~~~l~~~~~~-g~~~vv~G~i~ 98 (194)
T cd01994 61 LIRIEISGEEEDEVEDLKELLRKLKEE-GVDAVVFGAIL 98 (194)
T ss_pred EEEEeCCCCchHHHHHHHHHHHHHHHc-CCCEEEECccc
Confidence 76554322 1234444555555 79999999875
No 48
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=82.58 E-value=35 Score=35.72 Aligned_cols=8 Identities=38% Similarity=0.165 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 044284 307 ACKEALAA 314 (421)
Q Consensus 307 AckEa~~A 314 (421)
..+++-.+
T Consensus 116 ~~k~ae~~ 123 (387)
T PRK09510 116 QKKQAEEA 123 (387)
T ss_pred HHHHHHHH
Confidence 33444333
No 49
>PRK00509 argininosuccinate synthase; Provisional
Probab=82.20 E-value=23 Score=37.15 Aligned_cols=107 Identities=13% Similarity=0.096 Sum_probs=60.4
Q ss_pred CCEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHH----------HHHHH-HHHHH
Q 044284 18 EKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQ----------QHDIH-AMEVF 86 (421)
Q Consensus 18 ~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~----------~~~~~-a~elL 86 (421)
..+|+||+.|.-.|--++.|+.+.+ |..|+.+|+.-+... ..+....... +.+++ .++++
T Consensus 2 ~~kVvva~SGGlDSsvla~~l~e~l---G~eViavt~d~Gq~~------dle~a~~~A~~lGi~~~~viD~~~ef~~~~i 72 (399)
T PRK00509 2 KKKVVLAYSGGLDTSVIIKWLKETY---GCEVIAFTADVGQGE------ELEPIREKALKSGASEIYVEDLREEFVRDYV 72 (399)
T ss_pred CCeEEEEEcCCHHHHHHHHHHHHhh---CCeEEEEEEecCCHH------HHHHHHHHHHHcCCCeEEEEcCHHHHHHHhH
Confidence 4689999999999999999988754 778999999755320 0000000000 00111 11222
Q ss_pred HHHHHHh-hhcC-CceEEEEEEcCCHHHHHHHHHHHcCCCEEEEcCCCCC
Q 044284 87 LPFRCYC-TRRH-IQCELVVLERQDVARALIEYVSQYGVETMLLGAPTKN 134 (421)
Q Consensus 87 ~~~r~~c-~~~g-V~~e~vvleg~dva~aIve~A~~~~idlIVmGs~gr~ 134 (421)
.++...- .-.| ...-+. +-..-++..++++|.+.+++.|+-|+.++|
T Consensus 73 ~~~i~~n~~y~g~ypl~~~-lcr~~i~~~l~~~A~~~G~~~IA~G~t~kG 121 (399)
T PRK00509 73 FPAIRANALYEGKYPLGTA-LARPLIAKKLVEIARKEGADAVAHGCTGKG 121 (399)
T ss_pred HHHHHhChHhcCcCCCchH-HHHHHHHHHHHHHHHHcCCCEEEeCCCcCC
Confidence 2221110 0001 000011 111246789999999999999999999864
No 50
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=82.11 E-value=18 Score=36.50 Aligned_cols=37 Identities=22% Similarity=0.070 Sum_probs=30.5
Q ss_pred CEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCC
Q 044284 19 KIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKS 58 (421)
Q Consensus 19 ~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~ 58 (421)
.+|+||+.|...|--++.++.+.+ |..++.|||-...
T Consensus 17 ~kVvValSGGVDSsvla~ll~~~~---G~~v~av~vd~G~ 53 (311)
T TIGR00884 17 AKVIIALSGGVDSSVAAVLAHRAI---GDRLTCVFVDHGL 53 (311)
T ss_pred CcEEEEecCChHHHHHHHHHHHHh---CCCEEEEEEeCCC
Confidence 789999999988888887776654 6789999998654
No 51
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=81.28 E-value=12 Score=38.60 Aligned_cols=92 Identities=14% Similarity=0.038 Sum_probs=60.1
Q ss_pred CCEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 044284 18 EKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRH 97 (421)
Q Consensus 18 ~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~g 97 (421)
..+|+|++.|...|--++.++.+ .|..++.||+...... . ..+-+..++.+|+..|
T Consensus 5 ~~kVlValSGGVDSsvaa~LL~~----~G~~V~~v~~~~~~~~------~--------------~~~d~~~a~~va~~Lg 60 (360)
T PRK14665 5 NKRVLLGMSGGTDSSVAAMLLLE----AGYEVTGVTFRFYEFN------G--------------STEYLEDARALAERLG 60 (360)
T ss_pred CCEEEEEEcCCHHHHHHHHHHHH----cCCeEEEEEEecCCCC------C--------------ChHHHHHHHHHHHHhC
Confidence 46899999999888887766654 4778999998743211 0 0112344566666667
Q ss_pred CceEEEEEE-----------------cC--C--------H-HHHHHHHHHHcCCCEEEEcCCCC
Q 044284 98 IQCELVVLE-----------------RQ--D--------V-ARALIEYVSQYGVETMLLGAPTK 133 (421)
Q Consensus 98 V~~e~vvle-----------------g~--d--------v-a~aIve~A~~~~idlIVmGs~gr 133 (421)
|+...+-+. +. + + -.++.++|.+.+++.|+.|-+.+
T Consensus 61 Ip~~vvd~~~~f~~~v~~~f~~~y~~g~tpnpC~~Cnr~ikf~~l~~~A~~~G~~~IATGHya~ 124 (360)
T PRK14665 61 IGHITYDARKVFRKQIIDYFIDEYMSGHTPVPCTLCNNYLKWPLLAKIADEMGIFYLATGHYVR 124 (360)
T ss_pred CCEEEEecHHHHHHHHHhhhhhHHhccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCccc
Confidence 766543331 11 1 1 13567899999999999997754
No 52
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=80.90 E-value=15 Score=36.24 Aligned_cols=89 Identities=19% Similarity=0.170 Sum_probs=60.2
Q ss_pred CEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 044284 19 KIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRHI 98 (421)
Q Consensus 19 ~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~gV 98 (421)
.+|+||..|...|.-.+.-|.+.+ |..+.+|.|..|..+. ..+.++..++...||
T Consensus 18 ~kv~vAfSGGvDSslLa~la~~~l---G~~v~AvTv~sP~~p~----------------------~e~e~A~~~A~~iGi 72 (269)
T COG1606 18 KKVVVAFSGGVDSSLLAKLAKEAL---GDNVVAVTVDSPYIPR----------------------REIEEAKNIAKEIGI 72 (269)
T ss_pred CeEEEEecCCccHHHHHHHHHHHh---ccceEEEEEecCCCCh----------------------hhhhHHHHHHHHhCC
Confidence 399999999988888888888877 7889999998754320 012223333333444
Q ss_pred ceEEEEEEc-----------------CCHHHHHHHHHHHcCCCEEEEcCCC
Q 044284 99 QCELVVLER-----------------QDVARALIEYVSQYGVETMLLGAPT 132 (421)
Q Consensus 99 ~~e~vvleg-----------------~dva~aIve~A~~~~idlIVmGs~g 132 (421)
..+.+-..- ..+-++|++.|.+.|.|.++=|+..
T Consensus 73 ~H~~i~~~~~~~~~~~n~~~rCY~CK~~v~~~l~~~a~~~Gyd~V~dGtNa 123 (269)
T COG1606 73 RHEFIKMNRMDPEFKENPENRCYLCKRAVYSTLVEEAEKRGYDVVADGTNA 123 (269)
T ss_pred cceeeehhhcchhhccCCCCcchHHHHHHHHHHHHHHHHcCCCEEEeCCcH
Confidence 433221111 1467899999999999999999874
No 53
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=80.40 E-value=50 Score=31.68 Aligned_cols=38 Identities=26% Similarity=0.303 Sum_probs=31.3
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044284 284 EDVEDDVKRLKMELKQTMDMYNAACKEALAAKQKAVEL 321 (421)
Q Consensus 284 ~~~eaEm~rLrlELk~tm~my~~AckEa~~Akqk~~eL 321 (421)
..+..++.++-.+|..+..-|..+|+|+-.|++|....
T Consensus 115 ~kl~~~~~~~~~~l~kskk~Y~~~~ke~~~a~~k~~~~ 152 (251)
T cd07653 115 SKLQQKLESSIKQLEKSKKAYEKAFKEAEKAKQKYEKA 152 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556677777888999999999999999999887554
No 54
>cd07656 F-BAR_srGAP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs, all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=79.00 E-value=17 Score=35.39 Aligned_cols=41 Identities=29% Similarity=0.390 Sum_probs=33.6
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 044284 284 EDVEDDVKRLKMELKQTMDMYNAACKEALAAKQKAVELEKW 324 (421)
Q Consensus 284 ~~~eaEm~rLrlELk~tm~my~~AckEa~~Akqk~~eL~~~ 324 (421)
..+..|+.+-=-||.-+|.-|..+|+||..|++|+.+....
T Consensus 120 ~~lq~el~~~~~eL~k~kK~Y~~~~~ea~~A~~K~~~ae~~ 160 (241)
T cd07656 120 SQLHDELLRVLNELQTAMKTYHTYHAESKSAERKLKEAEKQ 160 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677777899999999999999999999998776544
No 55
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=79.00 E-value=20 Score=36.02 Aligned_cols=88 Identities=15% Similarity=0.018 Sum_probs=55.4
Q ss_pred EEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhcCC-
Q 044284 20 IVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRHI- 98 (421)
Q Consensus 20 ~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~gV- 98 (421)
+|+||+.|...|--++.++.+.+ |..++.|||-.+... .. + ....+.+|...++
T Consensus 1 kVlVa~SGGVDSsvla~ll~~~l---G~~v~aV~vd~g~~~---------------~~---E----~~~~~~~~~~~g~i 55 (295)
T cd01997 1 KVILALSGGVDSTVAAVLLHKAI---GDRLTCVFVDNGLLR---------------KN---E----AERVEELFSKLLGI 55 (295)
T ss_pred CEEEEEcCChHHHHHHHHHHHHh---CCcEEEEEecCCCCC---------------hH---H----HHHHHHHHHHhCCC
Confidence 58999999998888887776643 667999999765321 00 1 1234445544443
Q ss_pred ceEEEEEEc---------CCH-----------HHHHHHHHHHcC-CCEEEEcCCC
Q 044284 99 QCELVVLER---------QDV-----------ARALIEYVSQYG-VETMLLGAPT 132 (421)
Q Consensus 99 ~~e~vvleg---------~dv-----------a~aIve~A~~~~-idlIVmGs~g 132 (421)
++..+-... .++ .+.+.++|.+.+ ++.|+.|++.
T Consensus 56 ~~~vvd~~e~fl~~l~~v~npe~rr~~~g~~~~~~l~~~A~~~g~~~~Ia~Gh~~ 110 (295)
T cd01997 56 NLIVVDASERFLSALKGVTDPEEKRKIIGETFIEVFEEEAKKLGLAEYLAQGTLY 110 (295)
T ss_pred cEEEEcCcHHHHHHhcCCCCHHHHHHHhhHHHHHHHHHHHHHcCCCCEEEECCcc
Confidence 444321110 011 224667899999 9999999874
No 56
>PF06364 DUF1068: Protein of unknown function (DUF1068); InterPro: IPR010471 This family consists of several hypothetical plant proteins from Arabidopsis thaliana and Oryza sativa. The function of this family is unknown.
Probab=78.33 E-value=7.5 Score=35.75 Aligned_cols=30 Identities=23% Similarity=0.395 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Q 044284 341 RGKAKIKAAIEAAEAAQKIAK--LEVQKRVNA 370 (421)
Q Consensus 341 ~EKak~~aA~eaaE~ak~~ae--~EaqkR~~a 370 (421)
+|-+||-++||..|.|++.|| +..|++..+
T Consensus 124 kEAeKCnsgmeTCEeAREkaEa~L~~e~Klta 155 (176)
T PF06364_consen 124 KEAEKCNSGMETCEEAREKAEAALVEERKLTA 155 (176)
T ss_pred HHHHhhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999988 455555444
No 57
>PHA02689 ORF051 putative membrane protein; Provisional
Probab=78.21 E-value=2.5 Score=36.91 Aligned_cols=29 Identities=17% Similarity=0.336 Sum_probs=22.1
Q ss_pred HHHhcCccchhhHHHHHHHHHHHHHHHHHH
Q 044284 386 DALWQSHMVLKYQSLFHILVVLILFYFYFT 415 (421)
Q Consensus 386 ~al~~~d~~~~~~~~~~~~~~~~~~~~~~~ 415 (421)
..|.+. -+|-|--+|+|+||++|.|++|.
T Consensus 22 HslL~~-~kY~~Iv~FEi~va~~L~~~FFk 50 (128)
T PHA02689 22 HSLLRA-ESYLAIAVLELLLALALALVFFR 50 (128)
T ss_pred hhhhcc-chhHHHHHHHHHHHHHHHHHHHH
Confidence 455553 45666666999999999999985
No 58
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=78.12 E-value=13 Score=32.47 Aligned_cols=37 Identities=16% Similarity=0.119 Sum_probs=27.1
Q ss_pred EEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecC
Q 044284 20 IVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQK 57 (421)
Q Consensus 20 ~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~ 57 (421)
+|+|++.|.+.|.-.+..+.+..... ..+.++|+-..
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~~-~~~~~v~~dtg 37 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPEL-KPVPVIFLDTG 37 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcccc-cCceEEEeCCC
Confidence 48899999999988877776654321 36888888654
No 59
>PRK00919 GMP synthase subunit B; Validated
Probab=77.51 E-value=26 Score=35.43 Aligned_cols=37 Identities=19% Similarity=0.016 Sum_probs=31.3
Q ss_pred CEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCC
Q 044284 19 KIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKS 58 (421)
Q Consensus 19 ~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~ 58 (421)
.+|+||+.|...|--++.|+.+.+ |..++.|||-.+.
T Consensus 22 ~kVlVa~SGGVDSsvla~la~~~l---G~~v~aV~vD~G~ 58 (307)
T PRK00919 22 GKAIIALSGGVDSSVAAVLAHRAI---GDRLTPVFVDTGL 58 (307)
T ss_pred CCEEEEecCCHHHHHHHHHHHHHh---CCeEEEEEEECCC
Confidence 789999999999998888887743 7789999998654
No 60
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=77.46 E-value=27 Score=39.33 Aligned_cols=22 Identities=32% Similarity=0.380 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 044284 352 AAEAAQKIAKLEVQKRVNAEAK 373 (421)
Q Consensus 352 aaE~ak~~ae~EaqkR~~aE~k 373 (421)
-+|..|+.+..|-.+|..+|+.
T Consensus 965 K~eEeqr~~qee~e~~l~~e~q 986 (1259)
T KOG0163|consen 965 KAEEEQRKAQEEEERRLALELQ 986 (1259)
T ss_pred HHHHHHHHhhhhHHHHHHHHHH
Confidence 4666777777777777777765
No 61
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=74.97 E-value=15 Score=32.85 Aligned_cols=81 Identities=15% Similarity=0.202 Sum_probs=48.8
Q ss_pred HHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhcCCceEEEEEEcCCHHHHHHHHH
Q 044284 39 ADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRHIQCELVVLERQDVARALIEYV 118 (421)
Q Consensus 39 id~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~gV~~e~vvleg~dva~aIve~A 118 (421)
+..+...+..|+.|+|.++....+. ..+ .....-..+-|..++.-+...|+.. +++.| ++.+.|.+++
T Consensus 17 L~~A~~~~~~v~~vfv~d~~~~~~~-~~~--------~~r~~Fl~~sL~~L~~~L~~~g~~L--~v~~g-~~~~~l~~l~ 84 (165)
T PF00875_consen 17 LHAAAQNGDPVLPVFVFDPEEFHPY-RIG--------PRRRRFLLESLADLQESLRKLGIPL--LVLRG-DPEEVLPELA 84 (165)
T ss_dssp HHHHHHTTSEEEEEEEE-HHGGTTC-SSC--------HHHHHHHHHHHHHHHHHHHHTTS-E--EEEES-SHHHHHHHHH
T ss_pred HHHHHHcCCCeEEEEEecccccccc-cCc--------chHHHHHHHHHHHHHHHHHhcCcce--EEEec-chHHHHHHHH
Confidence 3344556788999999987621110 000 0111223344566666666778764 45555 7999999999
Q ss_pred HHcCCCEEEEcCC
Q 044284 119 SQYGVETMLLGAP 131 (421)
Q Consensus 119 ~~~~idlIVmGs~ 131 (421)
++.+|+.|+.-..
T Consensus 85 ~~~~~~~V~~~~~ 97 (165)
T PF00875_consen 85 KEYGATAVYFNEE 97 (165)
T ss_dssp HHHTESEEEEE--
T ss_pred HhcCcCeeEeccc
Confidence 9999999998765
No 62
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=74.11 E-value=23 Score=36.17 Aligned_cols=36 Identities=14% Similarity=-0.039 Sum_probs=26.4
Q ss_pred CEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecC
Q 044284 19 KIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQK 57 (421)
Q Consensus 19 ~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~ 57 (421)
-.++||+.|...|-.++..+...+ |..+.++|+-+.
T Consensus 60 yD~iV~lSGGkDSs~la~ll~~~~---gl~~l~vt~~~~ 95 (343)
T TIGR03573 60 YDCIIGVSGGKDSTYQAHVLKKKL---GLNPLLVTVDPG 95 (343)
T ss_pred CCEEEECCCCHHHHHHHHHHHHHh---CCceEEEEECCC
Confidence 469999999999888875554433 556777888654
No 63
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=73.69 E-value=1e+02 Score=30.85 Aligned_cols=83 Identities=22% Similarity=0.246 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHH-Hhhhhhhhhhchh-hhHHHHHHHHHHHHHHHHHHHHHHH
Q 044284 288 DDVKRLKMELKQTMDMYNAACKEALAAKQKAVELEKWKMK-EEKRLKETQMGEE-RGKAKIKAAIEAAEAAQKIAKLEVQ 365 (421)
Q Consensus 288 aEm~rLrlELk~tm~my~~AckEa~~Akqk~~eL~~~~~E-E~~k~eea~~~eE-~EKak~~aA~eaaE~ak~~ae~Eaq 365 (421)
-=+|-||-.||.+..- |+-+..| ++-|-+=+|++|+ -|.+=++ +|| .||=+||
T Consensus 68 V~iRHLkakLkes~~~-----------------l~dRetEI~eLksQL~RMrEDWIEEECHR-----VEA--QLALKEA- 122 (305)
T PF15290_consen 68 VCIRHLKAKLKESENR-----------------LHDRETEIDELKSQLARMREDWIEEECHR-----VEA--QLALKEA- 122 (305)
T ss_pred HHHHHHHHHHHHHHHH-----------------HHhhHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH--HHHHHHH-
Confidence 4499999999987432 2222222 3445566666666 2222222 111 2233333
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCccchhhHHH
Q 044284 366 KRVNAEAKALKEAEEKRKLLDALWQSHMVLKYQSL 400 (421)
Q Consensus 366 kR~~aE~kA~~e~~ek~k~~~al~~~d~~~~~~~~ 400 (421)
.-|+|-++...|.-| ..|.-.|+++|+|=+
T Consensus 123 ---RkEIkQLkQvieTmr--ssL~ekDkGiQKYFv 152 (305)
T PF15290_consen 123 ---RKEIKQLKQVIETMR--SSLAEKDKGIQKYFV 152 (305)
T ss_pred ---HHHHHHHHHHHHHHH--hhhchhhhhHHHHHh
Confidence 246677777666544 456667888888755
No 64
>PHA02967 hypothetical protein; Provisional
Probab=72.37 E-value=3.1 Score=36.36 Aligned_cols=23 Identities=30% Similarity=0.649 Sum_probs=19.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHH
Q 044284 393 MVLKYQSLFHILVVLILFYFYFT 415 (421)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~ 415 (421)
-+|-|.-+|+++||++|.|++|.
T Consensus 25 ~kY~~Iv~FEi~val~L~~~FFk 47 (128)
T PHA02967 25 NKYFYILVFEVIVALIIINFFFK 47 (128)
T ss_pred ccchhHHHHHHHHHHHHHHHHHH
Confidence 45666667999999999999985
No 65
>TIGR00364 exsB protein. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.
Probab=72.35 E-value=28 Score=32.30 Aligned_cols=33 Identities=15% Similarity=0.102 Sum_probs=24.4
Q ss_pred EEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecC
Q 044284 21 VAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQK 57 (421)
Q Consensus 21 IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~ 57 (421)
++|++.|...|--++-++.+ .|..|..+|+..+
T Consensus 1 ~vv~lSGG~DSs~~~~~~~~----~g~~v~~~~~~~~ 33 (201)
T TIGR00364 1 AVVVLSGGQDSTTCLAIAKD----EGYEVHAITFDYG 33 (201)
T ss_pred CEEEeccHHHHHHHHHHHHH----cCCcEEEEEEECC
Confidence 47889999888887766654 3667889998643
No 66
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=72.23 E-value=41 Score=29.98 Aligned_cols=79 Identities=19% Similarity=0.190 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhcCCceEEEEEEc
Q 044284 28 DKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRHIQCELVVLER 107 (421)
Q Consensus 28 S~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~gV~~e~vvleg 107 (421)
++.+..++..|..+....|.++++|.+-+... ..+.| +..+...|+. +.+.+.+
T Consensus 14 ~~~~~e~l~~A~~La~~~g~~v~av~~G~~~~----------------------~~~~l---~~~l~~~G~d-~v~~~~~ 67 (164)
T PF01012_consen 14 NPVSLEALEAARRLAEALGGEVTAVVLGPAEE----------------------AAEAL---RKALAKYGAD-KVYHIDD 67 (164)
T ss_dssp -HHHHHHHHHHHHHHHCTTSEEEEEEEETCCC----------------------HHHHH---HHHHHSTTES-EEEEEE-
T ss_pred CHHHHHHHHHHHHHHhhcCCeEEEEEEecchh----------------------hHHHH---hhhhhhcCCc-EEEEecC
Confidence 38899999999999998899999998763121 11111 1222234433 2223322
Q ss_pred C--------CHHHHHHHHHHHcCCCEEEEcCCC
Q 044284 108 Q--------DVARALIEYVSQYGVETMLLGAPT 132 (421)
Q Consensus 108 ~--------dva~aIve~A~~~~idlIVmGs~g 132 (421)
. ..+++|.+.+++.++|+|++|+..
T Consensus 68 ~~~~~~~~~~~a~~l~~~~~~~~~~lVl~~~t~ 100 (164)
T PF01012_consen 68 PALAEYDPEAYADALAELIKEEGPDLVLFGSTS 100 (164)
T ss_dssp GGGTTC-HHHHHHHHHHHHHHHT-SEEEEESSH
T ss_pred ccccccCHHHHHHHHHHHHHhcCCCEEEEcCcC
Confidence 2 257789999999999999999874
No 67
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=72.03 E-value=51 Score=31.78 Aligned_cols=92 Identities=21% Similarity=0.156 Sum_probs=57.5
Q ss_pred EEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 044284 20 IVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRHIQ 99 (421)
Q Consensus 20 ~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~gV~ 99 (421)
+++|...|.+.|-.|+-+|++. ...+.|+++.+......+. +... +.-.+..|..-||+
T Consensus 2 kv~vl~SGGKDS~lAl~~~~~~----~~V~~L~~~~~~~~~s~~~--h~~~---------------~~~~~~qA~algiP 60 (222)
T TIGR00289 2 KVAVLYSGGKDSILALYKALEE----HEVISLVGVFSENEESYMF--HSPN---------------LHLTDLVAEAVGIP 60 (222)
T ss_pred eEEEEecCcHHHHHHHHHHHHc----CeeEEEEEEcCCCCCcccc--ccCC---------------HHHHHHHHHHcCCC
Confidence 6888999999999999999884 3456677777653210000 1000 01122334455777
Q ss_pred eEEEEEEc--CCHHHHHHHHHHHcCCCEEEEcCCC
Q 044284 100 CELVVLER--QDVARALIEYVSQYGVETMLLGAPT 132 (421)
Q Consensus 100 ~e~vvleg--~dva~aIve~A~~~~idlIVmGs~g 132 (421)
...+...+ .+-.+.+.+...+.+++.||-|.=-
T Consensus 61 l~~~~~~~~~e~~~~~l~~~l~~~gv~~vv~GdI~ 95 (222)
T TIGR00289 61 LIKLYTSGEEEKEVEDLAGQLGELDVEALCIGAIE 95 (222)
T ss_pred eEEEEcCCchhHHHHHHHHHHHHcCCCEEEECccc
Confidence 75544433 3456677777788899999999763
No 68
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=72.03 E-value=42 Score=37.79 Aligned_cols=29 Identities=28% Similarity=0.370 Sum_probs=24.0
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044284 283 MEDVEDDVKRLKMELKQTMDMYNAACKEA 311 (421)
Q Consensus 283 ~~~~eaEm~rLrlELk~tm~my~~AckEa 311 (421)
..++|.|+++||.|||+.-+-...+-.|.
T Consensus 547 ~~~lE~E~~~lr~elk~kee~~~~~e~~~ 575 (697)
T PF09726_consen 547 RRQLESELKKLRRELKQKEEQIRELESEL 575 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999877776665554
No 69
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=71.95 E-value=18 Score=40.74 Aligned_cols=36 Identities=22% Similarity=0.164 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044284 286 VEDDVKRLKMELKQTMDMYNAACKEALAAKQKAVEL 321 (421)
Q Consensus 286 ~eaEm~rLrlELk~tm~my~~AckEa~~Akqk~~eL 321 (421)
+|.|=||-=||=+|-.+--..++||--.+-+|-.|.
T Consensus 327 aELerRRq~leeqqqreree~eqkEreE~ekkerer 362 (1118)
T KOG1029|consen 327 AELERRRQALEEQQQREREEVEQKEREEEEKKERER 362 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555777777777777777766665554443
No 70
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=70.32 E-value=42 Score=34.71 Aligned_cols=87 Identities=17% Similarity=0.055 Sum_probs=55.7
Q ss_pred CCEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 044284 18 EKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRH 97 (421)
Q Consensus 18 ~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~g 97 (421)
..+|+|++.|...|--++.+.. ..|..++.||+..... + ...++.+|...|
T Consensus 5 ~~kVlVa~SGGvDSsv~a~lL~----~~G~eV~av~~~~~~~---------------------e----~~~a~~va~~LG 55 (362)
T PRK14664 5 KKRVLVGMSGGIDSTATCLMLQ----EQGYEIVGVTMRVWGD---------------------E----PQDARELAARMG 55 (362)
T ss_pred CCEEEEEEeCCHHHHHHHHHHH----HcCCcEEEEEecCcch---------------------h----HHHHHHHHHHhC
Confidence 3689999999987777665432 3577788888853110 0 022455555556
Q ss_pred CceEEEEEEc-----------------C----------CH-HHHHHHHHHHcCCCEEEEcCCCC
Q 044284 98 IQCELVVLER-----------------Q----------DV-ARALIEYVSQYGVETMLLGAPTK 133 (421)
Q Consensus 98 V~~e~vvleg-----------------~----------dv-a~aIve~A~~~~idlIVmGs~gr 133 (421)
|++..+-+.. . .+ -.++.++|.+.++|.|+.|.+.+
T Consensus 56 I~~~vvd~~~~f~~~v~~~~~~~~~~G~tpnpC~~Cn~~iKf~~L~~~A~~~G~~~IATGHyar 119 (362)
T PRK14664 56 IEHYVADERVPFKDTIVKNFIDEYRQGRTPNPCVMCNPLFKFRMLIEWADKLGCAWIATGHYSR 119 (362)
T ss_pred CCEEEEeChHHHHHHHHHHhHHHHHcCCCCCCchhhhHHHHHHHHHHHHHHcCCCEEEECCccc
Confidence 6554332220 0 12 23588999999999999999875
No 71
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=69.77 E-value=29 Score=35.53 Aligned_cols=100 Identities=18% Similarity=0.164 Sum_probs=58.3
Q ss_pred CEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 044284 19 KIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRHI 98 (421)
Q Consensus 19 ~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~gV 98 (421)
++|+|++.|...|--++..+.+ .|..++.+|+......... ..+.. . ..+-...++.+|...||
T Consensus 1 ~kVlValSGGvDSsvla~lL~~----~G~~V~~v~~~~~~~~~~~-~~~~~----~-------s~~d~~~a~~~a~~LgI 64 (346)
T PRK00143 1 KRVVVGMSGGVDSSVAAALLKE----QGYEVIGVFMKLWDDDDET-GKGGC----C-------AEEDIADARRVADKLGI 64 (346)
T ss_pred CeEEEEecCCHHHHHHHHHHHH----cCCcEEEEEEeCCCccccc-ccCCc----C-------cHHHHHHHHHHHHHcCC
Confidence 3799999999888877655443 3667999999754321000 00000 0 01112334455666666
Q ss_pred ceEEEEEEc---------------------------CCH-HHHHHHHHHHcCCCEEEEcCCCCC
Q 044284 99 QCELVVLER---------------------------QDV-ARALIEYVSQYGVETMLLGAPTKN 134 (421)
Q Consensus 99 ~~e~vvleg---------------------------~dv-a~aIve~A~~~~idlIVmGs~gr~ 134 (421)
++..+-+.. ..+ -.++.++|.+.++|.|+.|.+.+-
T Consensus 65 p~~vvd~~~~f~~~vi~~~~~~~~~g~tpnpc~~C~r~ik~~~l~~~A~~~g~~~IATGH~a~d 128 (346)
T PRK00143 65 PHYVVDFEKEFWDRVIDYFLDEYKAGRTPNPCVLCNKEIKFKAFLEYARELGADYIATGHYARI 128 (346)
T ss_pred cEEEEeCHHHHHHHHHHHHHHHHHcCCCCCcChhhhHHHHHHHHHHHHHHCCCCEEEeeeeccc
Confidence 655432211 012 356778999999999999997653
No 72
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.55 E-value=79 Score=35.95 Aligned_cols=7 Identities=29% Similarity=0.377 Sum_probs=3.3
Q ss_pred HHHHHHH
Q 044284 291 KRLKMEL 297 (421)
Q Consensus 291 ~rLrlEL 297 (421)
+|=.+||
T Consensus 323 ~kGqaEL 329 (1118)
T KOG1029|consen 323 EKGQAEL 329 (1118)
T ss_pred hhhhHHH
Confidence 3444555
No 73
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=69.48 E-value=51 Score=29.93 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=21.2
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCCC
Q 044284 111 ARALIEYVSQYGVETMLLGAPTKN 134 (421)
Q Consensus 111 a~aIve~A~~~~idlIVmGs~gr~ 134 (421)
+++|.+++++.+.|+|++|.+..+
T Consensus 80 a~~l~~~i~~~~p~~Vl~g~t~~g 103 (181)
T cd01985 80 AKALAALIKKEKPDLILAGATSIG 103 (181)
T ss_pred HHHHHHHHHHhCCCEEEECCcccc
Confidence 688999999999999999998763
No 74
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=69.41 E-value=23 Score=40.02 Aligned_cols=26 Identities=35% Similarity=0.323 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044284 348 AAIEAAEAAQKIAKLEVQKRVNAEAK 373 (421)
Q Consensus 348 aA~eaaE~ak~~ae~EaqkR~~aE~k 373 (421)
++-++|..+++..++|-..|+.+|=+
T Consensus 256 ~~~eEak~kkKekekek~er~KaeGk 281 (1064)
T KOG1144|consen 256 AQEEEAKEKKKEKEKEKKERKKAEGK 281 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 34455556666667776666666643
No 75
>PRK08349 hypothetical protein; Validated
Probab=69.25 E-value=65 Score=29.89 Aligned_cols=33 Identities=18% Similarity=0.046 Sum_probs=26.7
Q ss_pred EEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEec
Q 044284 20 IVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQ 56 (421)
Q Consensus 20 ~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~ 56 (421)
+++|++.|...|--|+-++.. .|..|++||+-.
T Consensus 2 ~~vvllSGG~DS~v~~~~l~~----~g~~v~av~~d~ 34 (198)
T PRK08349 2 KAVALLSSGIDSPVAIYLMLR----RGVEVYPVHFRQ 34 (198)
T ss_pred cEEEEccCChhHHHHHHHHHH----cCCeEEEEEEeC
Confidence 689999999988888855443 578999999974
No 76
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity
Probab=69.07 E-value=38 Score=35.38 Aligned_cols=35 Identities=17% Similarity=0.109 Sum_probs=28.4
Q ss_pred EEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCC
Q 044284 21 VAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKS 58 (421)
Q Consensus 21 IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~ 58 (421)
|+||+.|.-.|--++.|+.+.. +..|+.+|+--+.
T Consensus 1 Vvva~SGGlDSsvll~~l~e~~---~~eV~av~~d~Gq 35 (385)
T cd01999 1 VVLAYSGGLDTSVILKWLKEKG---GYEVIAVTADVGQ 35 (385)
T ss_pred CEEEecCCHHHHHHHHHHHHhC---CCeEEEEEEECCC
Confidence 6899999999999999987753 4579999997553
No 77
>PRK00074 guaA GMP synthase; Reviewed
Probab=68.46 E-value=44 Score=36.14 Aligned_cols=88 Identities=15% Similarity=0.039 Sum_probs=56.3
Q ss_pred CEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHH-HhhhcC
Q 044284 19 KIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRC-YCTRRH 97 (421)
Q Consensus 19 ~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~-~c~~~g 97 (421)
.+|+||+.|...|.-++..+.+.+ |..++.|||-..... .. + ...+.. +|+..|
T Consensus 216 ~~vlva~SGGvDS~vll~ll~~~l---g~~v~av~vd~g~~~---------------~~---e----~~~~~~~~a~~lg 270 (511)
T PRK00074 216 KKVILGLSGGVDSSVAAVLLHKAI---GDQLTCVFVDHGLLR---------------KN---E----AEQVMEMFREHFG 270 (511)
T ss_pred CcEEEEeCCCccHHHHHHHHHHHh---CCceEEEEEeCCCCC---------------HH---H----HHHHHHHHHHHcC
Confidence 789999999988888777776644 677999999755311 00 1 122222 345567
Q ss_pred CceEEEEEEc---------CCH-----------HHHHHHHHHHc-CCCEEEEcCC
Q 044284 98 IQCELVVLER---------QDV-----------ARALIEYVSQY-GVETMLLGAP 131 (421)
Q Consensus 98 V~~e~vvleg---------~dv-----------a~aIve~A~~~-~idlIVmGs~ 131 (421)
|++..+-... .++ ...+-++|.+. +++.|+.|++
T Consensus 271 i~~~vvd~~~~f~~~l~g~~~~~~~r~~~~~~~~~~~~~~a~~~~g~~~latGhn 325 (511)
T PRK00074 271 LNLIHVDASDRFLSALAGVTDPEEKRKIIGREFIEVFEEEAKKLGGVKFLAQGTL 325 (511)
T ss_pred CcEEEEccHHHHHHhccCCCCcHHhhhhhhHHHHHHHHHHHHHccCCCEEEECCC
Confidence 7665432211 011 23456788898 9999999985
No 78
>TIGR00591 phr2 photolyase PhrII. All proteins in this family for which functions are known are DNA-photolyases used for the direct repair of UV irradiation induced DNA damage. Some repair 6-4 photoproducts while others repair cyclobutane pyrimidine dimers. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=68.41 E-value=37 Score=35.80 Aligned_cols=84 Identities=13% Similarity=0.101 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhcCCceEEEEEEcCCHHH
Q 044284 33 HALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRHIQCELVVLERQDVAR 112 (421)
Q Consensus 33 ~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~gV~~e~vvleg~dva~ 112 (421)
.||..|++.+...+..|+.|+|.+|..... . .....-..+-|..+..-+.+.|+.. +++. +++.+
T Consensus 39 ~aL~~A~~~a~~~~~~vl~vyi~dp~~~~~--------~----~~r~~Fl~esL~~L~~~L~~~g~~L--~v~~-g~~~~ 103 (454)
T TIGR00591 39 WALIAAQTLALKKKLPLHVCFCLVDFFLAA--------T----RRHYFFMLGGLDEVANECERLIIPF--HLLD-GPPKE 103 (454)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEeCCCcccc--------c----HHHHHHHHHHHHHHHHHHHHcCCce--EEee-cChHH
Confidence 577778776544566799999997753210 0 1111233444566666677778776 3444 57999
Q ss_pred HHHHHHHHcCCCEEEEcCC
Q 044284 113 ALIEYVSQYGVETMLLGAP 131 (421)
Q Consensus 113 aIve~A~~~~idlIVmGs~ 131 (421)
.|.+.+++++|+.|+.-..
T Consensus 104 ~l~~l~~~~~i~~V~~~~~ 122 (454)
T TIGR00591 104 LLPYFVDLHAAAAVVTDFS 122 (454)
T ss_pred HHHHHHHHcCCCEEEEecc
Confidence 9999999999999998764
No 79
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=68.23 E-value=69 Score=40.13 Aligned_cols=75 Identities=24% Similarity=0.318 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHhhhhhhhhhchh---hhHHHHHHHHHHHHHHHHHHHH
Q 044284 288 DDVKRLKMELKQTMDMYNAACKEALAAKQKAVELEKWKMKEEKRLKETQMGEE---RGKAKIKAAIEAAEAAQKIAKL 362 (421)
Q Consensus 288 aEm~rLrlELk~tm~my~~AckEa~~Akqk~~eL~~~~~EE~~k~eea~~~eE---~EKak~~aA~eaaE~ak~~ae~ 362 (421)
++..+|+..|.-..+--..+-+|.=++++.+.+|.....|-.+++.|...... .||+--++|++++|++-+.++-
T Consensus 1470 tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le~eE~ 1547 (1930)
T KOG0161|consen 1470 TELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALEAEED 1547 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 33344444443333333333334444444444444444444444443333322 4444445555555554443333
No 80
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=67.00 E-value=52 Score=33.10 Aligned_cols=95 Identities=13% Similarity=0.027 Sum_probs=58.4
Q ss_pred CCEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 044284 18 EKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRH 97 (421)
Q Consensus 18 ~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~g 97 (421)
+.+++|++.|.+.|.-.|.-|.+.+...+..+.+|||-....++ ++-++ ...+|++.|
T Consensus 19 f~~~vv~~SGGKDS~VlLhLa~kaf~~~~~p~~vl~IDTG~~F~-------------------Et~ef---rd~~a~~~g 76 (294)
T TIGR02039 19 FERPVMLYSIGKDSSVLLHLARKAFYPGPLPFPLLHVDTGWKFR-------------------EMIAF---RDHMVAKYG 76 (294)
T ss_pred cCCcEEEEecChHHHHHHHHHHHHhcccCCCeEEEEEecCCCCH-------------------HHHHH---HHHHHHHhC
Confidence 45678899999999888877776665445678999997654320 11111 122334446
Q ss_pred CceEEEEEE-----cC-----CH--------HHHHHHHHHHcCCCEEEEcCCCCC
Q 044284 98 IQCELVVLE-----RQ-----DV--------ARALIEYVSQYGVETMLLGAPTKN 134 (421)
Q Consensus 98 V~~e~vvle-----g~-----dv--------a~aIve~A~~~~idlIVmGs~gr~ 134 (421)
+++..+..+ |- ++ ...+-+++.++++|.++.|.+.--
T Consensus 77 l~l~v~~~~~~~~~g~~~~~~~~~~~c~vlK~~pL~~al~e~g~da~itG~RRDE 131 (294)
T TIGR02039 77 LRLIVHSNEEGIADGINPFTEGSALHTDIMKTEALRQALDKNQFDAAFGGARRDE 131 (294)
T ss_pred CCEEEEechhhhhcCccccccChHHHhhHHHHHHHHHHHHHcCCCEEEecCChhh
Confidence 555543221 10 11 135667888899999999987543
No 81
>PRK14561 hypothetical protein; Provisional
Probab=65.45 E-value=44 Score=31.19 Aligned_cols=85 Identities=15% Similarity=0.068 Sum_probs=52.9
Q ss_pred EEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 044284 20 IVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRHIQ 99 (421)
Q Consensus 20 ~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~gV~ 99 (421)
+|+|++.|...|--.+.++... ..+.++|+..... . + +..++.+|...|++
T Consensus 2 kV~ValSGG~DSslll~~l~~~-----~~v~a~t~~~g~~----------------~----e----~~~a~~~a~~lGi~ 52 (194)
T PRK14561 2 KAGVLFSGGKDSSLAAILLERF-----YDVELVTVNFGVL----------------D----S----WKHAREAAKALGFP 52 (194)
T ss_pred EEEEEEechHHHHHHHHHHHhc-----CCeEEEEEecCch----------------h----H----HHHHHHHHHHhCCC
Confidence 6999999998888887766432 3356777653210 0 0 33456667777777
Q ss_pred eEEEEEEcC--------------------CHHHHHHHHHHHcCCCEEEEcCCCCC
Q 044284 100 CELVVLERQ--------------------DVARALIEYVSQYGVETMLLGAPTKN 134 (421)
Q Consensus 100 ~e~vvleg~--------------------dva~aIve~A~~~~idlIVmGs~gr~ 134 (421)
...+.+... .+...++..+. .+++.|+.|.+.-.
T Consensus 53 ~~~v~~~~~~~~~~~~~~~~~~~P~~~~~~l~~~~l~~~a-~g~~~Ia~G~n~DD 106 (194)
T PRK14561 53 HRVLELDREILEKAVDMIIEDGYPNNAIQYVHEHALEALA-EEYDVIADGTRRDD 106 (194)
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHH-cCCCEEEEEecCCC
Confidence 765544321 12234444445 89999999999654
No 82
>cd07654 F-BAR_FCHSD The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains proteins (FCHSD). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of FCH and double SH3 domain (FCHSD) proteins, so named as they contain an N-terminal F-BAR domain and two SH3 domains at the C-terminus. Vertebrates harbor two subfamily members, FCHSD1 and FCHSD2, which have been characterized only in silico. Their biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=65.45 E-value=65 Score=31.88 Aligned_cols=38 Identities=21% Similarity=0.293 Sum_probs=33.3
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044284 284 EDVEDDVKRLKMELKQTMDMYNAACKEALAAKQKAVEL 321 (421)
Q Consensus 284 ~~~eaEm~rLrlELk~tm~my~~AckEa~~Akqk~~eL 321 (421)
..+..|+.+-=-||.-++.-|..+|+++..|.+|+.+-
T Consensus 120 ~~lq~el~~~~~eL~ksKK~Y~~~~~~~~~ar~K~~~a 157 (264)
T cd07654 120 QRAQAEVQQTVRELSKSRKTYFEREQVAHLAREKAADV 157 (264)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 56777888888999999999999999999999998763
No 83
>PRK14057 epimerase; Provisional
Probab=64.25 E-value=70 Score=31.55 Aligned_cols=44 Identities=9% Similarity=0.264 Sum_probs=30.1
Q ss_pred HHHHHHHhhhcCCceEEEEEEcCCHHHHHHHHHHHcCCCEEEEcCC
Q 044284 86 FLPFRCYCTRRHIQCELVVLERQDVARALIEYVSQYGVETMLLGAP 131 (421)
Q Consensus 86 L~~~r~~c~~~gV~~e~vvleg~dva~aIve~A~~~~idlIVmGs~ 131 (421)
+..++++..++|..+. +-++| .+-..-+..+.+.|+|.+|+|+.
T Consensus 180 I~~lr~~~~~~~~~~~-IeVDG-GI~~~ti~~l~~aGad~~V~GSa 223 (254)
T PRK14057 180 VAQLLCLLGDKREGKI-IVIDG-SLTQDQLPSLIAQGIDRVVSGSA 223 (254)
T ss_pred HHHHHHHHHhcCCCce-EEEEC-CCCHHHHHHHHHCCCCEEEEChH
Confidence 4445555556665543 23444 57777788889999999999965
No 84
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=64.16 E-value=1.1e+02 Score=34.78 Aligned_cols=23 Identities=0% Similarity=0.020 Sum_probs=14.1
Q ss_pred HHHHHHHHhhhcCCceEEEEEEc
Q 044284 85 VFLPFRCYCTRRHIQCELVVLER 107 (421)
Q Consensus 85 lL~~~r~~c~~~gV~~e~vvleg 107 (421)
+|..-..+-...|+.+..+...+
T Consensus 489 ILkeEQElYekEGLnv~ei~f~D 511 (1259)
T KOG0163|consen 489 ILKEEQELYEKEGLNVPEIEFTD 511 (1259)
T ss_pred HHHHHHHHHHhcCCCCCceEecc
Confidence 44555556666788876665544
No 85
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=63.04 E-value=91 Score=37.03 Aligned_cols=46 Identities=28% Similarity=0.371 Sum_probs=34.1
Q ss_pred CCCChhcHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 044284 279 SSQNMEDVEDDVKRLKME-------LKQTMDMYNAACKEALAAKQKAVELEKW 324 (421)
Q Consensus 279 ~s~~~~~~eaEm~rLrlE-------Lk~tm~my~~AckEa~~Akqk~~eL~~~ 324 (421)
..+...+++.-|+.||.+ -|+....-.+|-.+|.+|+|++..|+..
T Consensus 1617 a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~ 1669 (1758)
T KOG0994|consen 1617 ATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKY 1669 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778999999999965 4556666667777788888887766543
No 86
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=62.96 E-value=65 Score=32.96 Aligned_cols=96 Identities=18% Similarity=0.184 Sum_probs=55.9
Q ss_pred EEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 044284 20 IVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRHIQ 99 (421)
Q Consensus 20 ~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~gV~ 99 (421)
+|+|++.|-..|--++-++.+ .|..++.+|+......... ... ...+-...++.+|...||+
T Consensus 1 kVlValSGGvDSsvla~lL~~----~g~~v~~v~i~~~~~~~~~--~~~------------~s~~d~~~a~~va~~lgI~ 62 (349)
T cd01998 1 KVVVAMSGGVDSSVAAALLKE----QGYEVIGVFMKNWDEDDGK--GGC------------CSEEDLKDARRVADQLGIP 62 (349)
T ss_pred CEEEEecCCHHHHHHHHHHHH----cCCcEEEEEEecccccccc--cCC------------CCHHHHHHHHHHHHHhCCc
Confidence 589999999888877655543 4667999998754311000 000 0001123344455555665
Q ss_pred eEEEEEEc---------------------------CCH-HHHHHHHHHHcCCCEEEEcCCCC
Q 044284 100 CELVVLER---------------------------QDV-ARALIEYVSQYGVETMLLGAPTK 133 (421)
Q Consensus 100 ~e~vvleg---------------------------~dv-a~aIve~A~~~~idlIVmGs~gr 133 (421)
...+-+.. -.+ ...+.++|.+.++|.|+.|.+.+
T Consensus 63 ~~vvd~~~~f~~~v~~~~i~~~~~g~tpnpc~~C~r~ikf~~l~~~A~~~g~~~IatGHya~ 124 (349)
T cd01998 63 HYVVNFEKEYWEKVFEPFLEEYKKGRTPNPDILCNKEIKFGALLDYAKKLGADYIATGHYAR 124 (349)
T ss_pred EEEEECcHHHHHHHHHHHHHHHHcCCCCCchHhhhhHHHHHHHHHHHHHcCcCEEEECCcCC
Confidence 54432211 011 34567889999999999999865
No 87
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=62.62 E-value=64 Score=31.27 Aligned_cols=44 Identities=11% Similarity=0.252 Sum_probs=30.4
Q ss_pred HHHHHHHhhhcCCceEEEEEEcCCHHHHHHHHHHHcCCCEEEEcCC
Q 044284 86 FLPFRCYCTRRHIQCELVVLERQDVARALIEYVSQYGVETMLLGAP 131 (421)
Q Consensus 86 L~~~r~~c~~~gV~~e~vvleg~dva~aIve~A~~~~idlIVmGs~ 131 (421)
+..++++..+++.++. +-++| .+-..-+..+.+.|+|.+|+|+.
T Consensus 166 I~~lr~~~~~~~~~~~-IeVDG-GI~~~ti~~l~~aGaD~~V~GSa 209 (228)
T PRK08091 166 VIQVENRLGNRRVEKL-ISIDG-SMTLELASYLKQHQIDWVVSGSA 209 (228)
T ss_pred HHHHHHHHHhcCCCce-EEEEC-CCCHHHHHHHHHCCCCEEEEChh
Confidence 3445555556666554 23444 47777788889999999999975
No 88
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=62.47 E-value=47 Score=39.01 Aligned_cols=12 Identities=25% Similarity=0.163 Sum_probs=5.8
Q ss_pred CCCCCEEEEccC
Q 044284 15 EGREKIVAVAID 26 (421)
Q Consensus 15 ~~~~~~IlVAVD 26 (421)
.|.+..|.++.|
T Consensus 23 ~GgFGtVYLAkd 34 (1021)
T PTZ00266 23 NGRFGEVFLVKH 34 (1021)
T ss_pred cCCCeEEEEEEE
Confidence 445555544433
No 89
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=62.47 E-value=17 Score=38.43 Aligned_cols=31 Identities=35% Similarity=0.463 Sum_probs=24.7
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044284 283 MEDVEDDVKRLKMELKQTMDMYNAACKEALA 313 (421)
Q Consensus 283 ~~~~eaEm~rLrlELk~tm~my~~AckEa~~ 313 (421)
..++|+||+||+.|||+..+|--.|.|+--+
T Consensus 430 s~~~e~e~~rl~~e~k~~~q~~~~~~k~~~~ 460 (476)
T KOG0646|consen 430 SLELEAEVDRLKTELKRSLQALTHAYKELRN 460 (476)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 4678999999999999998887666655333
No 90
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=61.83 E-value=61 Score=34.11 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=16.1
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHH
Q 044284 283 MEDVEDDVKRLKMELKQTMDMYN 305 (421)
Q Consensus 283 ~~~~eaEm~rLrlELk~tm~my~ 305 (421)
+...|.|++||+.|+.|..+=.-
T Consensus 50 ~~~~E~~l~~Lq~e~~~l~e~~v 72 (459)
T KOG0288|consen 50 LQEKELELNRLQEENTQLNEERV 72 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667788888888888765443
No 91
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=61.04 E-value=66 Score=32.19 Aligned_cols=25 Identities=32% Similarity=0.383 Sum_probs=17.8
Q ss_pred HHHHHHhHHhHHHhhhhhhhhhchh
Q 044284 316 QKAVELEKWKMKEEKRLKETQMGEE 340 (421)
Q Consensus 316 qk~~eL~~~~~EE~~k~eea~~~eE 340 (421)
|+.+||.+...||.+|.+||..+..
T Consensus 331 qekqeleqmaeeekkr~eeaeerqr 355 (445)
T KOG2891|consen 331 QEKQELEQMAEEEKKREEEAEERQR 355 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3567788888888888887755443
No 92
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=60.99 E-value=26 Score=38.12 Aligned_cols=65 Identities=22% Similarity=0.279 Sum_probs=44.1
Q ss_pred HHHhhhhhhhhhchh--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc
Q 044284 326 MKEEKRLKETQMGEE--------RGKAKIKAAIEAAEAAQKIAKLEVQKRVNAEAKALKEAEEKRKLLDALWQ 390 (421)
Q Consensus 326 ~EE~~k~eea~~~eE--------~EKak~~aA~eaaE~ak~~ae~EaqkR~~aE~kA~~e~~ek~k~~~al~~ 390 (421)
.||-+|++|-+++|+ .|+++-+++....|-.+.-.|+|-..|...|.+-.+..+|+.+--+-+..
T Consensus 623 ~eer~RirE~rerEqR~~a~~ERee~eRl~~erlrle~qRQrLERErmErERLEreRM~ve~eRr~eqeRihr 695 (940)
T KOG4661|consen 623 AEERQRIREEREREQRRKAAVEREELERLKAERLRLERQRQRLERERMERERLERERMKVEEERRDEQERIHR 695 (940)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhh
Confidence 444555555555555 66777777777777777777888888888888877777666555444443
No 93
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=60.54 E-value=42 Score=32.37 Aligned_cols=43 Identities=12% Similarity=0.227 Sum_probs=30.3
Q ss_pred HHHHHHHhhhcCCceEEEEEEcCCHHHHHHHHHHHcCCCEEEEcCC
Q 044284 86 FLPFRCYCTRRHIQCELVVLERQDVARALIEYVSQYGVETMLLGAP 131 (421)
Q Consensus 86 L~~~r~~c~~~gV~~e~vvleg~dva~aIve~A~~~~idlIVmGs~ 131 (421)
+...+++..+++ ++. +-+ +|.+-..-+..+...|+|.+|+||-
T Consensus 157 i~~lr~~~~~~~-~~~-IeV-DGGI~~~t~~~~~~AGad~~VaGSa 199 (220)
T COG0036 157 IRELRAMIDERL-DIL-IEV-DGGINLETIKQLAAAGADVFVAGSA 199 (220)
T ss_pred HHHHHHHhcccC-CeE-EEE-eCCcCHHHHHHHHHcCCCEEEEEEE
Confidence 455566666554 433 223 4457888889999999999999993
No 94
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=60.52 E-value=1e+02 Score=31.74 Aligned_cols=34 Identities=15% Similarity=-0.004 Sum_probs=27.3
Q ss_pred CEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEec
Q 044284 19 KIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQ 56 (421)
Q Consensus 19 ~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~ 56 (421)
.+|+|++.|...|--++.++.+ .|..|+.||+..
T Consensus 1 ~kVlValSGGvDSsv~a~lL~~----~G~~V~~v~~~~ 34 (352)
T TIGR00420 1 KKVIVGLSGGVDSSVSAYLLKQ----QGYEVVGVFMKN 34 (352)
T ss_pred CeEEEEEeCCHHHHHHHHHHHH----cCCeEEEEEEEc
Confidence 3799999999998888776655 467899999964
No 95
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=60.29 E-value=84 Score=34.20 Aligned_cols=16 Identities=25% Similarity=0.258 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 044284 287 EDDVKRLKMELKQTMD 302 (421)
Q Consensus 287 eaEm~rLrlELk~tm~ 302 (421)
++|-.||..+|-+|.+
T Consensus 163 n~e~~~l~~~~~e~~~ 178 (591)
T KOG2412|consen 163 NAENIRLVEKLSETRK 178 (591)
T ss_pred hHHHHHhhhhHHHHHH
Confidence 4666677766666643
No 96
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=59.80 E-value=91 Score=30.23 Aligned_cols=38 Identities=24% Similarity=0.321 Sum_probs=32.2
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044284 284 EDVEDDVKRLKMELKQTMDMYNAACKEALAAKQKAVEL 321 (421)
Q Consensus 284 ~~~eaEm~rLrlELk~tm~my~~AckEa~~Akqk~~eL 321 (421)
..+..|+...--||..++.-|..+|+|+-.|++|..+.
T Consensus 115 ~kl~~el~~~~~el~k~Kk~Y~~~~~e~e~Ar~k~e~a 152 (237)
T cd07657 115 QQIDEQYKKLTDEVEKLKSEYQKLLEDYKAAKSKFEEA 152 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888899999999999999999999997544
No 97
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=58.78 E-value=59 Score=31.46 Aligned_cols=44 Identities=9% Similarity=0.269 Sum_probs=31.0
Q ss_pred HHHHHHHhhhcCCceEEEEEEcCCHHHHHHHHHHHcCCCEEEEcCC
Q 044284 86 FLPFRCYCTRRHIQCELVVLERQDVARALIEYVSQYGVETMLLGAP 131 (421)
Q Consensus 86 L~~~r~~c~~~gV~~e~vvleg~dva~aIve~A~~~~idlIVmGs~ 131 (421)
+..++++..+++..+.. -++| -+-..-+..+.+.|+|.+|+|++
T Consensus 156 I~~lr~~~~~~~~~~~I-eVDG-GI~~~~i~~~~~aGad~~V~Gss 199 (229)
T PRK09722 156 IAELKALRERNGLEYLI-EVDG-SCNQKTYEKLMEAGADVFIVGTS 199 (229)
T ss_pred HHHHHHHHHhcCCCeEE-EEEC-CCCHHHHHHHHHcCCCEEEEChH
Confidence 45556666666665442 3444 57777778888999999999976
No 98
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=57.64 E-value=1.5e+02 Score=27.83 Aligned_cols=88 Identities=15% Similarity=0.159 Sum_probs=52.7
Q ss_pred EEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhcCCceE
Q 044284 22 AVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRHIQCE 101 (421)
Q Consensus 22 lVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~gV~~e 101 (421)
.++.-.++.+..++..|...+...|..++++.+-+.. .+....++ ...|+. +
T Consensus 28 ~~~~vi~e~~~~~l~ea~~la~~~g~~v~av~~G~~~-------------------~~~~~~~l--------~~~G~d-~ 79 (202)
T cd01714 28 GVPLIINPYDEYAVEEALRLKEKYGGEVTVVSMGPPQ-------------------AEEALREA--------LAMGAD-R 79 (202)
T ss_pred CCCccCChHhHHHHHHHHHhhhhcCCEEEEEEECCHH-------------------HHHHHHHH--------HHcCCC-E
Confidence 3566677888999999999876656677666654210 00111111 123432 1
Q ss_pred EEEEEc--------CCHHHHHHHHHHHcCCCEEEEcCCCCCCCc
Q 044284 102 LVVLER--------QDVARALIEYVSQYGVETMLLGAPTKNGLS 137 (421)
Q Consensus 102 ~vvleg--------~dva~aIve~A~~~~idlIVmGs~gr~~f~ 137 (421)
.+++++ ...+.+|.+.+.+.+.|+|++|++..+...
T Consensus 80 V~~~~~~~~~~~~~e~~a~al~~~i~~~~p~lVL~~~t~~~~~g 123 (202)
T cd01714 80 AILVSDRAFAGADTLATAKALAAAIKKIGVDLILTGKQSIDGDT 123 (202)
T ss_pred EEEEecccccCCChHHHHHHHHHHHHHhCCCEEEEcCCcccCCc
Confidence 222222 123667899999989999999988754433
No 99
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=57.27 E-value=1.1e+02 Score=29.11 Aligned_cols=88 Identities=20% Similarity=0.134 Sum_probs=52.6
Q ss_pred EccCCCHHHHHHHHHHHHHHhcCCCEE-EEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhcCCceE
Q 044284 23 VAIDKDKFSQHALKWAADNILSRHQTI-KLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRHIQCE 101 (421)
Q Consensus 23 VAVDgS~~S~~ALkwAid~a~~~ga~I-~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~gV~~e 101 (421)
|...|.+.|-.|+.||.+ .|..+ .|+|+.+.... .. ..+. . -+..++..|+..||+..
T Consensus 2 vl~SGGkDS~~al~~a~~----~G~~v~~l~~~~~~~~~-~~-~~~~-----------~----~~~~~~~~A~~lgip~~ 60 (218)
T TIGR03679 2 ALYSGGKDSNYALYKALE----EGHEVRCLITVVPENEE-SY-MFHT-----------P----NIELTRLQAEALGIPLV 60 (218)
T ss_pred eeecCcHHHHHHHHHHHH----cCCEEEEEEEeccCCCC-cc-ccCC-----------C----CHHHHHHHHHHhCCCEE
Confidence 567788899999988888 36666 47788754311 00 0000 0 12334555667788876
Q ss_pred EEEEEc--C----CHHHHHHHHHHHcCCCEEEEcCCC
Q 044284 102 LVVLER--Q----DVARALIEYVSQYGVETMLLGAPT 132 (421)
Q Consensus 102 ~vvleg--~----dva~aIve~A~~~~idlIVmGs~g 132 (421)
.+-+.+ . +...++.+++.+ +++.||.|+.-
T Consensus 61 ~i~~~~~~~~~~~~l~~~l~~~~~~-g~~~vv~G~i~ 96 (218)
T TIGR03679 61 KIETSGEKEKEVEDLKGALKELKRE-GVEGIVTGAIA 96 (218)
T ss_pred EEECCCCChHHHHHHHHHHHHHHHc-CCCEEEECCcc
Confidence 554432 1 133445454444 99999999985
No 100
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=57.13 E-value=1.4e+02 Score=28.90 Aligned_cols=35 Identities=17% Similarity=0.039 Sum_probs=28.3
Q ss_pred CEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecC
Q 044284 19 KIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQK 57 (421)
Q Consensus 19 ~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~ 57 (421)
++++|+..|.-.|--++.||.+. +..++.|++.-.
T Consensus 2 ~kvvVl~SGG~DSt~~l~~a~~~----~~~v~alt~dyg 36 (231)
T PRK11106 2 KRAVVVFSGGQDSTTCLIQALQQ----YDEVHCVTFDYG 36 (231)
T ss_pred CcEEEEeeCcHHHHHHHHHHHhc----CCeEEEEEEEeC
Confidence 47899999999999999999652 457889998754
No 101
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=56.95 E-value=1.3e+02 Score=31.29 Aligned_cols=37 Identities=22% Similarity=0.085 Sum_probs=30.2
Q ss_pred CCCCEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEec
Q 044284 16 GREKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQ 56 (421)
Q Consensus 16 ~~~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~ 56 (421)
|...+++|++.|.-.|--|+-|+.+ .|..+..||+..
T Consensus 174 g~~gkvvvllSGGiDS~vaa~l~~k----~G~~v~av~~~~ 210 (394)
T PRK01565 174 GTSGKALLLLSGGIDSPVAGYLAMK----RGVEIEAVHFHS 210 (394)
T ss_pred CCCCCEEEEECCChhHHHHHHHHHH----CCCEEEEEEEeC
Confidence 3468999999999888888877755 488899999964
No 102
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=56.23 E-value=1.4e+02 Score=29.02 Aligned_cols=119 Identities=19% Similarity=0.133 Sum_probs=68.5
Q ss_pred EEEEccCCCHHHHHHHHHHHHHHhcCCCE-EEEEEEecCCC-CCCc--ccc----------cc--------c----hHHH
Q 044284 20 IVAVAIDKDKFSQHALKWAADNILSRHQT-IKLVHVIQKSH-SNNQ--YSV----------GI--------S----EELI 73 (421)
Q Consensus 20 ~IlVAVDgS~~S~~ALkwAid~a~~~ga~-I~LlHV~~~~~-~~~~--~~~----------~~--------~----~~~~ 73 (421)
++++=+.|.|.|-.|+=||+. .|-. +.|++|.|... ++.. +.. +. . ..+.
T Consensus 2 k~~aL~SGGKDS~~Al~~a~~----~G~eV~~Ll~~~p~~~dS~m~H~~n~~~~~~~Ae~~gi~l~~~~~~g~~e~eve~ 77 (223)
T COG2102 2 KVIALYSGGKDSFYALYLALE----EGHEVVYLLTVKPENGDSYMFHTPNLELAELQAEAMGIPLVTFDTSGEEEREVEE 77 (223)
T ss_pred cEEEEEecCcHHHHHHHHHHH----cCCeeEEEEEEecCCCCeeeeeccchHHHHHHHHhcCCceEEEecCccchhhHHH
Confidence 456678889999888888876 4555 56888887654 1110 100 00 0 0111
Q ss_pred HHHHHHH-----------HHHHHHHHHHHHhhhcCCceEEEEEEcCCHHHHHHHHHHHcCCCEEEEcCCCCCCCcccccc
Q 044284 74 EQQQHDI-----------HAMEVFLPFRCYCTRRHIQCELVVLERQDVARALIEYVSQYGVETMLLGAPTKNGLSRSSFC 142 (421)
Q Consensus 74 ~~~~~~~-----------~a~elL~~~r~~c~~~gV~~e~vvleg~dva~aIve~A~~~~idlIVmGs~gr~~f~~~~~~ 142 (421)
.....+. ..+.-......+|.+.|+.+-. -+.+-|+ ..+++..-+.|++.+|++.... +|.+.|++
T Consensus 78 L~~~l~~l~~d~iv~GaI~s~yqk~rve~lc~~lGl~~~~-PLWg~d~-~ell~e~~~~Gf~~~Iv~Vsa~-gL~~~~lG 154 (223)
T COG2102 78 LKEALRRLKVDGIVAGAIASEYQKERVERLCEELGLKVYA-PLWGRDP-EELLEEMVEAGFEAIIVAVSAE-GLDESWLG 154 (223)
T ss_pred HHHHHHhCcccEEEEchhhhHHHHHHHHHHHHHhCCEEee-cccCCCH-HHHHHHHHHcCCeEEEEEEecc-CCChHHhC
Confidence 1100000 1112234556789999987765 4667775 5777777788999999998754 44433333
Q ss_pred ccc
Q 044284 143 RLF 145 (421)
Q Consensus 143 r~~ 145 (421)
|.|
T Consensus 155 r~i 157 (223)
T COG2102 155 RRI 157 (223)
T ss_pred Ccc
Confidence 333
No 103
>PF14992 TMCO5: TMCO5 family
Probab=55.90 E-value=1e+02 Score=30.85 Aligned_cols=45 Identities=18% Similarity=0.321 Sum_probs=31.3
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHhHHH
Q 044284 283 MEDVEDDVKRLKMELKQTMDMYNAA---CKEALAAKQKAVELEKWKMKE 328 (421)
Q Consensus 283 ~~~~eaEm~rLrlELk~tm~my~~A---ckEa~~Akqk~~eL~~~~~EE 328 (421)
..-+..++.++..|+...++.|... |..+.+-=+|.+|.= .++|+
T Consensus 118 lqql~~~~~~qE~ei~kve~d~~~v~~l~eDq~~~i~klkE~L-~rmE~ 165 (280)
T PF14992_consen 118 LQQLLESCASQEKEIAKVEDDYQQVHQLCEDQANEIKKLKEKL-RRMEE 165 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 4556678888888888888888766 776666655655533 55555
No 104
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=55.76 E-value=1.5e+02 Score=37.30 Aligned_cols=81 Identities=16% Similarity=0.214 Sum_probs=46.9
Q ss_pred ChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHhhhhhhhhhchh-hhHHHHHHHHHHHHHHHHHH
Q 044284 282 NMEDVEDDVKRLKMELKQTMDMYNAACKEALAAKQKAVELEKWKMKEEKRLKETQMGEE-RGKAKIKAAIEAAEAAQKIA 360 (421)
Q Consensus 282 ~~~~~eaEm~rLrlELk~tm~my~~AckEa~~Akqk~~eL~~~~~EE~~k~eea~~~eE-~EKak~~aA~eaaE~ak~~a 360 (421)
...+++.+.++...||.++..-..--..+.-..++++.+|+....|=+..++.-|.+.. .||++..-+.+-.+--.++-
T Consensus 1063 ~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Le 1142 (1930)
T KOG0161|consen 1063 QKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELE 1142 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666677777777777777777777777777777777765443333443333333 45555444444334444444
Q ss_pred HH
Q 044284 361 KL 362 (421)
Q Consensus 361 e~ 362 (421)
+.
T Consensus 1143 e~ 1144 (1930)
T KOG0161|consen 1143 EQ 1144 (1930)
T ss_pred HH
Confidence 44
No 105
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=55.74 E-value=1.2e+02 Score=32.55 Aligned_cols=38 Identities=16% Similarity=-0.025 Sum_probs=30.5
Q ss_pred CCCCEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecC
Q 044284 16 GREKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQK 57 (421)
Q Consensus 16 ~~~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~ 57 (421)
|...+++|.+.|...|--|+-|+.. +|..|++||+.-.
T Consensus 175 g~~gk~lvllSGGiDS~va~~~~~k----rG~~v~~l~f~~g 212 (482)
T PRK01269 175 GTQEDVLSLISGGFDSGVASYMLMR----RGSRVHYCFFNLG 212 (482)
T ss_pred cccCeEEEEEcCCchHHHHHHHHHH----cCCEEEEEEEecC
Confidence 3468999999999989888866655 4889999999743
No 106
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=55.72 E-value=79 Score=33.00 Aligned_cols=88 Identities=15% Similarity=0.091 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhcCCCEEEEEEEecCCCCCC-ccccccchHHHHHHHHHHHHHHHHHHHHHHhhhcCCceEEEEEEcCCHH
Q 044284 33 HALKWAADNILSRHQTIKLVHVIQKSHSNN-QYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRHIQCELVVLERQDVA 111 (421)
Q Consensus 33 ~ALkwAid~a~~~ga~I~LlHV~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~gV~~e~vvleg~dva 111 (421)
.||..|++ .+..|+.|.|..+..... ..+...... .....-..+-|..++.-+.+.|+.. +++. |++.
T Consensus 17 ~aL~~A~~----~~~~vl~vfi~dp~~~~~~~~~~~~~~~----~~r~~Fl~esL~~L~~~L~~~g~~L--~v~~-G~~~ 85 (429)
T TIGR02765 17 PALYKASS----SSDTLIPLYCFDPRQFKLTHFFGFPKTG----PARGKFLLESLKDLRTSLRKLGSDL--LVRS-GKPE 85 (429)
T ss_pred HHHHHHHh----cCCeEEEEEEECchHhccccccccCCCC----HHHHHHHHHHHHHHHHHHHHcCCCe--EEEe-CCHH
Confidence 45555554 355789999988643210 000000000 1111223444566666677778876 3445 4789
Q ss_pred HHHHHHHHHcCCCEEEEcCC
Q 044284 112 RALIEYVSQYGVETMLLGAP 131 (421)
Q Consensus 112 ~aIve~A~~~~idlIVmGs~ 131 (421)
+.|.+.+++.+|+.|+.-..
T Consensus 86 ~vl~~L~~~~~~~~V~~~~~ 105 (429)
T TIGR02765 86 DVLPELIKELGVRTVFLHQE 105 (429)
T ss_pred HHHHHHHHHhCCCEEEEecc
Confidence 99999999999999998765
No 107
>PRK08576 hypothetical protein; Provisional
Probab=55.67 E-value=64 Score=34.33 Aligned_cols=34 Identities=26% Similarity=0.106 Sum_probs=26.6
Q ss_pred EEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecC
Q 044284 20 IVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQK 57 (421)
Q Consensus 20 ~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~ 57 (421)
+|+|++.|.+.|..++..+.+.. + .+.+||+-+.
T Consensus 236 rVvVafSGGKDStvLL~La~k~~---~-~V~aV~iDTG 269 (438)
T PRK08576 236 TVIVPWSGGKDSTAALLLAKKAF---G-DVTAVYVDTG 269 (438)
T ss_pred CEEEEEcChHHHHHHHHHHHHhC---C-CCEEEEeCCC
Confidence 89999999999999887776654 2 2788887544
No 108
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=55.52 E-value=40 Score=34.14 Aligned_cols=20 Identities=20% Similarity=0.243 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 044284 289 DVKRLKMELKQTMDMYNAAC 308 (421)
Q Consensus 289 Em~rLrlELk~tm~my~~Ac 308 (421)
+|..+.-=++-.+.+++..-
T Consensus 229 ~~~~~~~l~~~v~~l~D~~~ 248 (321)
T PF07946_consen 229 DMEALEPLLKLVFYLIDKLA 248 (321)
T ss_pred cHHHHHHHHHHHHHHHHHhh
Confidence 35566666666666666554
No 109
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=55.27 E-value=1.7e+02 Score=32.86 Aligned_cols=47 Identities=21% Similarity=0.239 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc
Q 044284 341 RGKAKIKAAIEAAEAAQKIAKLEVQKRVNAEAKALKEAEEKRKLLDALWQ 390 (421)
Q Consensus 341 ~EKak~~aA~eaaE~ak~~ae~EaqkR~~aE~kA~~e~~ek~k~~~al~~ 390 (421)
.||.|...-||+-|++++--+ .+|+.+|-+-..+.+++.|.-.++..
T Consensus 330 eek~KR~k~~Erkee~~rk~d---eerkK~e~ke~ea~E~rkkr~~aei~ 376 (811)
T KOG4364|consen 330 EEKQKRAKIMERKEEKSRKSD---EERKKLESKEVEAQELRKKRHEAEIG 376 (811)
T ss_pred HHHHHHHHHHHHHHHHhhhhh---hhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 344444444444444444322 33445555666666777766666554
No 110
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=54.35 E-value=1.8e+02 Score=28.41 Aligned_cols=32 Identities=22% Similarity=0.212 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044284 290 VKRLKMELKQTMDMYNAACKEALAAKQKAVEL 321 (421)
Q Consensus 290 m~rLrlELk~tm~my~~AckEa~~Akqk~~eL 321 (421)
-..|...|+|..+-...|..+...+..++..|
T Consensus 7 k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~L 38 (246)
T PF00769_consen 7 KQELEERLRQMEEEMRRAQEALEESEETAEEL 38 (246)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455567777788888888888888888887
No 111
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type. This model describes a narrow clade of cyanobacterial deoxyribodipyrimidine photo-lyase. This group, in contrast to several closely related proteins, uses a chromophore that, in other lineages is modified further to become coenzyme F420. This chromophore is called 8-HDF in most articles on the DNA photolyase and FO in most literature on coenzyme F420.
Probab=53.97 E-value=64 Score=34.37 Aligned_cols=83 Identities=8% Similarity=0.066 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhcCCceEEEEEEcCCHHH
Q 044284 33 HALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRHIQCELVVLERQDVAR 112 (421)
Q Consensus 33 ~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~gV~~e~vvleg~dva~ 112 (421)
.||..|++ .+..|+.|+|..+..... . .... . ...-..+-|..+.+-+.+.|+.. +++. |++.+
T Consensus 17 ~AL~~A~~----~~~~vl~vfi~dp~~~~~----~-~~~~-~---r~~Fl~esL~~L~~~L~~~G~~L--~v~~-G~p~~ 80 (471)
T TIGR03556 17 IGLAAARQ----QSAKVVGLFCLDPNILQA----D-DMAP-A---RVAYLIGCLQELQQRYQQAGSQL--LILQ-GDPVQ 80 (471)
T ss_pred HHHHHHHh----cCCCEEEEEEEchhhhcc----c-cCCH-H---HHHHHHHHHHHHHHHHHHCCCCe--EEEE-CCHHH
Confidence 45555553 456799999987642210 0 0000 0 01223444555666677778776 3445 47899
Q ss_pred HHHHHHHHcCCCEEEEcCC
Q 044284 113 ALIEYVSQYGVETMLLGAP 131 (421)
Q Consensus 113 aIve~A~~~~idlIVmGs~ 131 (421)
.|.+.+++++|+.|+.-..
T Consensus 81 vl~~l~~~~~~~~V~~~~~ 99 (471)
T TIGR03556 81 LIPQLAQQLGAKAVYWNLD 99 (471)
T ss_pred HHHHHHHHcCCCEEEEecc
Confidence 9999999999999997655
No 112
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=52.72 E-value=2.4e+02 Score=32.33 Aligned_cols=101 Identities=22% Similarity=0.336 Sum_probs=61.2
Q ss_pred CChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHhhhhhhh--hhc--------------hh---h
Q 044284 281 QNMEDVEDDVKRLKMELKQTMDMYNAACKEALAAKQKAVELEKWKMKEEKRLKET--QMG--------------EE---R 341 (421)
Q Consensus 281 ~~~~~~eaEm~rLrlELk~tm~my~~AckEa~~Akqk~~eL~~~~~EE~~k~eea--~~~--------------eE---~ 341 (421)
.....++.|+.++..||....|||...-.+.--.+.|+..|...=-+.++.+.+. |+. -| .
T Consensus 364 ~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~ 443 (775)
T PF10174_consen 364 AQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEALR 443 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHH
Confidence 4457788999999999999999999988887777777654433222333333222 222 11 6
Q ss_pred hHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhHHHHHH
Q 044284 342 GKAKIKAAIEAAEA---AQKIAKLEVQKRVNAEAKALKEAEEK 381 (421)
Q Consensus 342 EKak~~aA~eaaE~---ak~~ae~EaqkR~~aE~kA~~e~~ek 381 (421)
||.|....+++.-. -.+.-+++.+++...+.++..+.-++
T Consensus 444 eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~ 486 (775)
T PF10174_consen 444 EKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQK 486 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 67776666654411 12234556666666666666555444
No 113
>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length. Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown.
Probab=52.57 E-value=2.3e+02 Score=27.45 Aligned_cols=58 Identities=19% Similarity=0.314 Sum_probs=39.4
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHhhhhhhhhhchh
Q 044284 283 MEDVEDDVKRLKMELKQTMDMYNAACKEALAAKQKAVELEKWKMKEEKRLKETQMGEE 340 (421)
Q Consensus 283 ~~~~eaEm~rLrlELk~tm~my~~AckEa~~Akqk~~eL~~~~~EE~~k~eea~~~eE 340 (421)
+|--.+||.||--+.=+-+..|.+.||-+=+-=++..-.....+...++|+.++.+.-
T Consensus 81 qDYRqa~v~RlE~KVv~pL~~Y~~~cK~~r~elK~~~~ar~kEikq~~~Leklr~k~p 138 (219)
T PF06730_consen 81 QDYRQAEVERLEAKVVEPLSQYGTICKHARDELKKFNKARNKEIKQLKQLEKLRQKNP 138 (219)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 5788899999999999999999999997655433433333333344445556665544
No 114
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=52.02 E-value=81 Score=30.33 Aligned_cols=44 Identities=14% Similarity=0.162 Sum_probs=29.9
Q ss_pred HHHHHHHhhhcCCceEEEEEEcCCHHHHHHHHHHHcCCCEEEEcCC
Q 044284 86 FLPFRCYCTRRHIQCELVVLERQDVARALIEYVSQYGVETMLLGAP 131 (421)
Q Consensus 86 L~~~r~~c~~~gV~~e~vvleg~dva~aIve~A~~~~idlIVmGs~ 131 (421)
+..++++..+++.++. +-++| -+...-+..+.+.|+|.+|+|+.
T Consensus 158 I~~l~~~~~~~~~~~~-IeVDG-GI~~eti~~l~~aGaDi~V~GSa 201 (223)
T PRK08745 158 LRAIRKKIDALGKPIR-LEIDG-GVKADNIGAIAAAGADTFVAGSA 201 (223)
T ss_pred HHHHHHHHHhcCCCee-EEEEC-CCCHHHHHHHHHcCCCEEEEChh
Confidence 4455555555555533 23444 47777888889999999999965
No 115
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=51.87 E-value=3.8e+02 Score=32.26 Aligned_cols=39 Identities=26% Similarity=0.230 Sum_probs=35.4
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044284 283 MEDVEDDVKRLKMELKQTMDMYNAACKEALAAKQKAVEL 321 (421)
Q Consensus 283 ~~~~eaEm~rLrlELk~tm~my~~AckEa~~Akqk~~eL 321 (421)
..|++.++++-..|..||..|-..|=.+|-.|||||+.+
T Consensus 1417 A~~~~~~l~~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~ 1455 (1758)
T KOG0994|consen 1417 AGDADTQLRSKLAEAEQTLSMVREAKLSASEAQQSAQRA 1455 (1758)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 468889999999999999999999999999999998753
No 116
>PF14943 MRP-S26: Mitochondrial ribosome subunit S26
Probab=51.83 E-value=2e+02 Score=26.62 Aligned_cols=28 Identities=18% Similarity=0.292 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044284 289 DVKRLKMELKQTMDMYNAACKEALAAKQ 316 (421)
Q Consensus 289 Em~rLrlELk~tm~my~~AckEa~~Akq 316 (421)
|+.||...-+++|.--..-+++-+-.++
T Consensus 28 el~~~~~~Yr~~m~alR~~f~ee~~~~~ 55 (170)
T PF14943_consen 28 ELKRRYNNYRTQMRALRSEFREEVLRKK 55 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555544444444444433
No 117
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=50.80 E-value=1.8e+02 Score=28.05 Aligned_cols=92 Identities=22% Similarity=0.195 Sum_probs=53.3
Q ss_pred EEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 044284 20 IVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRHIQ 99 (421)
Q Consensus 20 ~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~gV~ 99 (421)
++++...|.|.|-.|+-+|.+. ...+.|+++.+......+. +.... +++ +..++.-||+
T Consensus 2 k~~~l~SGGKDS~~al~~a~~~----~~v~~L~t~~~~~~~s~~~--H~~~~------------~~~---~~qA~algip 60 (223)
T TIGR00290 2 KVAALISGGKDSCLALYHALKE----HEVISLVNIMPENEESYMF--HGVNA------------HLT---DLQAESIGIP 60 (223)
T ss_pred cEEEEecCcHHHHHHHHHHHHh----CeeEEEEEEecCCCCcccc--cccCH------------HHH---HHHHHHcCCC
Confidence 4678899999999999999987 2356788888764311110 00000 111 1112234665
Q ss_pred eEEEEEE--cCCHHHHHHHHHHHcCCCEEEEcCCC
Q 044284 100 CELVVLE--RQDVARALIEYVSQYGVETMLLGAPT 132 (421)
Q Consensus 100 ~e~vvle--g~dva~aIve~A~~~~idlIVmGs~g 132 (421)
...+... .++-.+.+.+...+.+++.||-|.--
T Consensus 61 l~~~~~~~~~e~~~e~l~~~l~~~gv~~vv~GdI~ 95 (223)
T TIGR00290 61 LIKLYTEGTEEDEVEELKGILHTLDVEAVVFGAIY 95 (223)
T ss_pred eEEeecCCCccHHHHHHHHHHHHcCCCEEEECCcc
Confidence 4322111 22345666677777789999988763
No 118
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=50.80 E-value=69 Score=31.69 Aligned_cols=77 Identities=32% Similarity=0.371 Sum_probs=43.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHhhhhhhhhhchhhhHHHHHHHHHHHHHH------HH
Q 044284 285 DVEDDVKRLKMELKQTMDMYNAACKEALAAKQKAVELEKWKMKEEKRLKETQMGEERGKAKIKAAIEAAEAA------QK 358 (421)
Q Consensus 285 ~~eaEm~rLrlELk~tm~my~~AckEa~~Akqk~~eL~~~~~EE~~k~eea~~~eE~EKak~~aA~eaaE~a------k~ 358 (421)
-++.+..|||-||++|-+....++.| |..|+.-=.-+--. +==|||+--.++-|.. -|
T Consensus 174 Ainl~F~rlK~ele~tk~Klee~Qne----------lsAwkFTPdS~tGK------~LMAKCR~L~qENeElG~q~s~Gr 237 (330)
T KOG2991|consen 174 AINLFFLRLKGELEQTKDKLEEAQNE----------LSAWKFTPDSKTGK------MLMAKCRTLQQENEELGHQASEGR 237 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh----------hheeeecCCCcchH------HHHHHHHHHHHHHHHHHhhhhccc
Confidence 35566779999999997777666554 55565321111000 2234555444444332 24
Q ss_pred HHHHHH----HHHHHHHHhhhHH
Q 044284 359 IAKLEV----QKRVNAEAKALKE 377 (421)
Q Consensus 359 ~ae~Ea----qkR~~aE~kA~~e 377 (421)
||++|+ ||..++|+|..-+
T Consensus 238 ia~Le~eLAmQKs~seElkssq~ 260 (330)
T KOG2991|consen 238 IAELEIELAMQKSQSEELKSSQE 260 (330)
T ss_pred HHHHHHHHHHHHhhHHHHHHhHH
Confidence 555554 7888888887654
No 119
>PLN03086 PRLI-interacting factor K; Provisional
Probab=50.30 E-value=53 Score=36.09 Aligned_cols=20 Identities=15% Similarity=0.318 Sum_probs=11.0
Q ss_pred HhHHHhhhhhhhhhchhhhH
Q 044284 324 WKMKEEKRLKETQMGEERGK 343 (421)
Q Consensus 324 ~~~EE~~k~eea~~~eE~EK 343 (421)
|..|.-.|-+.||++.|+|+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~ 31 (567)
T PLN03086 12 LEREQRERKQRAKLKLERER 31 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444455566677666443
No 120
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=49.76 E-value=1.9e+02 Score=31.24 Aligned_cols=12 Identities=8% Similarity=0.324 Sum_probs=6.7
Q ss_pred CEEEEEEEecCC
Q 044284 47 QTIKLVHVIQKS 58 (421)
Q Consensus 47 a~I~LlHV~~~~ 58 (421)
+.+.++|+++|.
T Consensus 49 ~~y~ii~~vd~~ 60 (489)
T PF05262_consen 49 GRYYIIHAVDPE 60 (489)
T ss_pred CcEEEEEecCcc
Confidence 346666666544
No 121
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=49.37 E-value=91 Score=31.74 Aligned_cols=94 Identities=14% Similarity=0.114 Sum_probs=57.5
Q ss_pred CChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHhhhhhhhhhchh-hhHHHHHHHHHHHHHHHHH
Q 044284 281 QNMEDVEDDVKRLKMELKQTMDMYNAACKEALAAKQKAVELEKWKMKEEKRLKETQMGEE-RGKAKIKAAIEAAEAAQKI 359 (421)
Q Consensus 281 ~~~~~~eaEm~rLrlELk~tm~my~~AckEa~~Akqk~~eL~~~~~EE~~k~eea~~~eE-~EKak~~aA~eaaE~ak~~ 359 (421)
+...+++.++-.++.+|.+...-|....=+.+.++.++..|...-.+|.+++........ .....+..-..+++.++.+
T Consensus 214 ~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~~l~~~i~~e~~~i~~~~~~~l~~~~~~~~~L~re~~~a~~~ 293 (362)
T TIGR01010 214 SLISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQARIKSLRKQIDEQRNQLSGGLGDSLNEQTADYQRLVLQNELAQQQ 293 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 345777888888888888776666665666777777777777776666666654322111 3333444555556666666
Q ss_pred HHHHHHHHHHHHHhh
Q 044284 360 AKLEVQKRVNAEAKA 374 (421)
Q Consensus 360 ae~EaqkR~~aE~kA 374 (421)
-+.=.++..++.+.+
T Consensus 294 y~~~l~r~~~a~~~~ 308 (362)
T TIGR01010 294 LKAALTSLQQTRVEA 308 (362)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555555433
No 122
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=48.68 E-value=1.9e+02 Score=30.77 Aligned_cols=62 Identities=27% Similarity=0.388 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhHHhHHHhhhhhhhhhchh-----hhHHHHHHHHHHHH
Q 044284 291 KRLKMELKQTMDMYNAACKEALAA-KQKAVELEKWKMKEEKRLKETQMGEE-----RGKAKIKAAIEAAE 354 (421)
Q Consensus 291 ~rLrlELk~tm~my~~AckEa~~A-kqk~~eL~~~~~EE~~k~eea~~~eE-----~EKak~~aA~eaaE 354 (421)
.|.--+|...++|.+.|..|-=+- -.| ..| ..++.|+.+|.|.+.--| +|-+.-+.|++.||
T Consensus 255 q~aEqsl~dlQk~Lekar~e~rnvavek-~~l-erkl~ea~rl~elreg~e~e~~rkelE~lR~~L~kAE 322 (575)
T KOG4403|consen 255 QRAEQSLEDLQKRLEKAREEQRNVAVEK-LDL-ERKLDEAPRLSELREGVENETSRKELEQLRVALEKAE 322 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhchhhhh-hhH-HHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 334467777777887777762111 111 111 224557888888777666 33355555555555
No 123
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=48.55 E-value=1.1e+02 Score=30.55 Aligned_cols=21 Identities=48% Similarity=0.558 Sum_probs=8.7
Q ss_pred HHHHHHHHHHhhhHHHHHHHH
Q 044284 363 EVQKRVNAEAKALKEAEEKRK 383 (421)
Q Consensus 363 EaqkR~~aE~kA~~e~~ek~k 383 (421)
||..|+.||-|-.+|+++..+
T Consensus 349 eaeerqraeekeq~eaee~~r 369 (445)
T KOG2891|consen 349 EAEERQRAEEKEQKEAEELER 369 (445)
T ss_pred HHHHhhhhHHHHHHHHHHHHH
Confidence 333444444444444444333
No 124
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=48.01 E-value=76 Score=34.51 Aligned_cols=16 Identities=13% Similarity=0.314 Sum_probs=8.5
Q ss_pred cHHHHHHHHHHHHHHH
Q 044284 285 DVEDDVKRLKMELKQT 300 (421)
Q Consensus 285 ~~eaEm~rLrlELk~t 300 (421)
.+-.+...+++|-++-
T Consensus 168 ~l~~~~~e~~~~~~~r 183 (591)
T KOG2412|consen 168 RLVEKLSETRKEVKRR 183 (591)
T ss_pred HhhhhHHHHHHHHHHH
Confidence 3444555566665554
No 125
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=47.56 E-value=17 Score=30.74 Aligned_cols=70 Identities=16% Similarity=0.267 Sum_probs=42.5
Q ss_pred EEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 044284 20 IVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRHIQ 99 (421)
Q Consensus 20 ~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~gV~ 99 (421)
+|||==.| .-.||+-|++. ....+.-|+|.|...... ..
T Consensus 2 kVLviGsG--gREHAia~~l~----~s~~v~~v~~aPGN~G~~--------------------------------~~--- 40 (100)
T PF02844_consen 2 KVLVIGSG--GREHAIAWKLS----QSPSVEEVYVAPGNPGTA--------------------------------EL--- 40 (100)
T ss_dssp EEEEEESS--HHHHHHHHHHT----TCTTEEEEEEEE--TTGG--------------------------------GT---
T ss_pred EEEEECCC--HHHHHHHHHHh----cCCCCCEEEEeCCCHHHH--------------------------------hh---
Confidence 45555444 55799999875 344577788887643200 00
Q ss_pred eEEEEEEcCCHHHHHHHHHHHcCCCEEEEcCC
Q 044284 100 CELVVLERQDVARALIEYVSQYGVETMLLGAP 131 (421)
Q Consensus 100 ~e~vvleg~dva~aIve~A~~~~idlIVmGs~ 131 (421)
.+.+-+.-.| .++|+++|.+++||++|+|.-
T Consensus 41 ~~~~~~~~~d-~~~l~~~a~~~~idlvvvGPE 71 (100)
T PF02844_consen 41 GKNVPIDITD-PEELADFAKENKIDLVVVGPE 71 (100)
T ss_dssp SEEE-S-TT--HHHHHHHHHHTTESEEEESSH
T ss_pred ceecCCCCCC-HHHHHHHHHHcCCCEEEECCh
Confidence 0111112233 579999999999999999974
No 126
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=47.35 E-value=62 Score=29.57 Aligned_cols=66 Identities=23% Similarity=0.276 Sum_probs=42.1
Q ss_pred HHHHHHhhhcCCceEEEEEEcCCHHHHHHHHHH---HcCCCEEEEcCCCCCCCcccccccccccccccchhcccCCCcce
Q 044284 87 LPFRCYCTRRHIQCELVVLERQDVARALIEYVS---QYGVETMLLGAPTKNGLSRSSFCRLFKASDTPGTVLKWAPDFCN 163 (421)
Q Consensus 87 ~~~r~~c~~~gV~~e~vvleg~dva~aIve~A~---~~~idlIVmGs~gr~~f~~~~~~r~~~~~sVa~~V~k~Ap~~C~ 163 (421)
++....++..||+++..+.--+--.+.+.+|++ +.+++.||.++-+-+.|. .-|.-.++ +|
T Consensus 15 ~~a~~~L~~~gi~~dv~V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~aa~Lp--------------gvva~~t~--~P 78 (156)
T TIGR01162 15 KKAADILEEFGIPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAGAGGAAHLP--------------GMVAALTP--LP 78 (156)
T ss_pred HHHHHHHHHcCCCeEEEEECcccCHHHHHHHHHHHHHCCCeEEEEeCCccchhH--------------HHHHhccC--CC
Confidence 334444556699999888766656677777765 467888888876544443 22333344 78
Q ss_pred EEEEe
Q 044284 164 VYIVS 168 (421)
Q Consensus 164 V~VV~ 168 (421)
|+-|+
T Consensus 79 VIgvP 83 (156)
T TIGR01162 79 VIGVP 83 (156)
T ss_pred EEEec
Confidence 88775
No 127
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=47.33 E-value=2.2e+02 Score=33.23 Aligned_cols=38 Identities=21% Similarity=0.328 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhHHhH
Q 044284 289 DVKRLKMELKQTMDMYN-------AACKEALAAKQKAVELEKWKM 326 (421)
Q Consensus 289 Em~rLrlELk~tm~my~-------~AckEa~~Akqk~~eL~~~~~ 326 (421)
|++|.|.+|.|.|+.-+ .-++|...|++-+.+++-|+.
T Consensus 256 ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke 300 (1243)
T KOG0971|consen 256 ELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKE 300 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666555433 234555555555555555543
No 128
>PF06508 QueC: Queuosine biosynthesis protein QueC; InterPro: IPR018317 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In Rhizobium meliloti (Sinorhizobium meliloti), a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA [, ]. In Arthrobacter viscosus, the homologous gene is designated alu1 and is associated with an aluminum tolerance phenotype. When expressed in Escherichia coli, it conferred aliminium tolerance []. The entry also contains the gene queC, which is responsible for the conversion of GTP to 7-cyano-7-deazaguanine (preQ0). The biosynthesis of hypermodified tRNA nucleoside queuosine only occurs in eubacteria. It occupies the wobble position for all known tRNAs that are specific for Asp, Asn, His or Tyr [].; PDB: 3BL5_B 2PG3_A.
Probab=46.82 E-value=1.1e+02 Score=29.01 Aligned_cols=34 Identities=15% Similarity=0.078 Sum_probs=24.9
Q ss_pred EEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecC
Q 044284 20 IVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQK 57 (421)
Q Consensus 20 ~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~ 57 (421)
+++|.+.|.-.|--++-||.+. +..|+.||+.-.
T Consensus 1 Kavvl~SGG~DSt~~l~~~~~~----~~~v~al~~~YG 34 (209)
T PF06508_consen 1 KAVVLFSGGLDSTTCLYWAKKE----GYEVYALTFDYG 34 (209)
T ss_dssp EEEEE--SSHHHHHHHHHHHHH-----SEEEEEEEESS
T ss_pred CEEEEeCCCHHHHHHHHHHHHc----CCeEEEEEEECC
Confidence 5788899998888888888875 467999998743
No 129
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=46.26 E-value=2.9e+02 Score=29.36 Aligned_cols=19 Identities=21% Similarity=0.309 Sum_probs=8.4
Q ss_pred HHhHHhHHHhhhhhhhhhc
Q 044284 320 ELEKWKMKEEKRLKETQMG 338 (421)
Q Consensus 320 eL~~~~~EE~~k~eea~~~ 338 (421)
+|+..-.+++++++|.+.-
T Consensus 214 ~l~~~l~~~q~~l~eL~~~ 232 (420)
T COG4942 214 QLNSELSADQKKLEELRAN 232 (420)
T ss_pred HHHHHHHHHHHHHHHHHhH
Confidence 3444444444444444433
No 130
>PRK05370 argininosuccinate synthase; Validated
Probab=45.52 E-value=2.6e+02 Score=29.90 Aligned_cols=104 Identities=13% Similarity=0.018 Sum_probs=61.4
Q ss_pred CCEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHH-------------HHHHH-HHH
Q 044284 18 EKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQ-------------QQHDI-HAM 83 (421)
Q Consensus 18 ~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~-------------~~~~~-~a~ 83 (421)
..+|++|+.|.=.+-.++.|-.+. |..|+.+||--..+. .++..... .+.++ -++
T Consensus 11 ~~KVvLAYSGGLDTSv~l~wL~e~----~~eVia~~aDvGQ~~-------~ed~~~i~~kA~~~GA~~~~viDlr~eF~e 79 (447)
T PRK05370 11 GQRVGIAFSGGLDTSAALLWMRQK----GAVPYAYTANLGQPD-------EDDYDAIPRRAMEYGAENARLIDCRAQLVA 79 (447)
T ss_pred CCEEEEEecCCchHHHHHHHHHhc----CCeEEEEEEECCCCC-------ccchHHHHHHHHHhCCCEEEEeccHHHHHH
Confidence 469999999997777888997664 778888888643210 00111111 11111 222
Q ss_pred HHHHHHHHHhhhcCCce----EE-----EEEEcCCHHHHHHHHHHHcCCCEEEEcCCCCCCCc
Q 044284 84 EVFLPFRCYCTRRHIQC----EL-----VVLERQDVARALIEYVSQYGVETMLLGAPTKNGLS 137 (421)
Q Consensus 84 elL~~~r~~c~~~gV~~----e~-----vvleg~dva~aIve~A~~~~idlIVmGs~gr~~f~ 137 (421)
+.+ |+.. | +.-. +. .-+.-.=+++.|+++|++.+++.|.=|++|+|.=.
T Consensus 80 ~~i-~aI~-a---nA~Y~~~~e~~Y~l~t~LaRplia~~lv~~A~~~ga~aIAHG~TGKGNDQ 137 (447)
T PRK05370 80 EGI-AAIQ-C---GAFHISTGGVTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDGSTYKGNDI 137 (447)
T ss_pred HHH-HHHH-c---CCccccccCccccCCCcchHHHHHHHHHHHHHHhCCcEEEEcCCCCCCch
Confidence 333 3211 1 1111 10 11112236899999999999999999999988754
No 131
>PF12459 DUF3687: D-Ala-teichoic acid biosynthesis protein; InterPro: IPR021008 Proteins in this family are bacterial proteins of approximately 50 amino acids in length. There are two completely conserved residues (L and Y) that may be functionally important. A number of entries are annotated as D-Ala-teichoic acid biosynthesis protein; however there is no direct evidence to support this annotation.
Probab=45.45 E-value=23 Score=25.27 Aligned_cols=16 Identities=38% Similarity=0.880 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 044284 398 QSLFHILVVLILFYFY 413 (421)
Q Consensus 398 ~~~~~~~~~~~~~~~~ 413 (421)
.|+|-.+|.+.|+|+|
T Consensus 13 ~T~fYf~Ill~L~ylY 28 (42)
T PF12459_consen 13 KTLFYFAILLALIYLY 28 (42)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4666555666666665
No 132
>KOG3223 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.40 E-value=2.8e+02 Score=26.39 Aligned_cols=102 Identities=27% Similarity=0.337 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHhHHhHHHhhhhhhhhhchhhhHHHHHHHHHHHHHHHHHHHHHHH--------------------
Q 044284 306 AACKEALAAKQKAVELEKWKMKEEKRLKETQMGEERGKAKIKAAIEAAEAAQKIAKLEVQ-------------------- 365 (421)
Q Consensus 306 ~AckEa~~Akqk~~eL~~~~~EE~~k~eea~~~eE~EKak~~aA~eaaE~ak~~ae~Eaq-------------------- 365 (421)
.|.+|.-+-|+|..|=..|+-.+--......-.||.|+-+. +|.+-=..+++|++-|-.
T Consensus 16 aak~~~~~KK~ke~ED~~W~d~dk~~~kk~qrKEeee~KR~-eal~RK~E~krL~eeEmssL~~~kkp~~aa~~Kvtra~ 94 (221)
T KOG3223|consen 16 AAKAEEKDKKDKEKEDAKWRDDDKPKVKKVQRKEEEEEKRA-EALERKAEAKRLAEEEMSSLEGLKKPSKAANPKVTRAE 94 (221)
T ss_pred HHHHHHHHHhHHHHHHHhhhcccchhHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhcccCCCccccchhhHHH
Confidence 34455555566666777777444433333333333333333 333333445666654422
Q ss_pred --HHHHHHHhhhHHHHHHHHH----------HHH-Hhc---CccchhhHHHHHHHHHHH
Q 044284 366 --KRVNAEAKALKEAEEKRKL----------LDA-LWQ---SHMVLKYQSLFHILVVLI 408 (421)
Q Consensus 366 --kR~~aE~kA~~e~~ek~k~----------~~a-l~~---~d~~~~~~~~~~~~~~~~ 408 (421)
.|.+-+.+-.+.+.|++|- |+. |.- .+..|.-.+|-.-|+||-
T Consensus 95 i~~r~e~q~r~~~~~~ek~K~~a~~~ev~~~L~enlNr~~~d~~s~eArniDdAl~vLs 153 (221)
T KOG3223|consen 95 IIRREEDQVRGAKKAAEKNKSQAGEDEVEKVLVENLNRTMPDTGSYEARNIDDALAVLS 153 (221)
T ss_pred HHHHHhhHHHhhHHHHHhhcchhhhhHHHHHHHHHhccccccccchhhccHHHHHHHHh
Confidence 2333444555556666554 332 222 134566677777777764
No 133
>PHA03162 hypothetical protein; Provisional
Probab=45.38 E-value=69 Score=28.43 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=18.4
Q ss_pred CCChhcHHHHHHHHHHHHHHH
Q 044284 280 SQNMEDVEDDVKRLKMELKQT 300 (421)
Q Consensus 280 s~~~~~~eaEm~rLrlELk~t 300 (421)
..+++++.+|+.||++|-|+.
T Consensus 12 ~~tmEeLaaeL~kLqmENK~L 32 (135)
T PHA03162 12 QPTMEDLAAEIAKLQLENKAL 32 (135)
T ss_pred CCCHHHHHHHHHHHHHHHHHH
Confidence 456899999999999998886
No 134
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=45.13 E-value=66 Score=34.00 Aligned_cols=34 Identities=24% Similarity=0.203 Sum_probs=22.5
Q ss_pred EEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCC
Q 044284 20 IVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSH 59 (421)
Q Consensus 20 ~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~ 59 (421)
+|||==+| .=.|||-|++.. ...+.-++|.|..+
T Consensus 2 kVLviGsG--gREHAiA~~la~----s~~v~~~~~apgN~ 35 (428)
T COG0151 2 KVLVIGSG--GREHALAWKLAQ----SPLVLYVYVAPGNP 35 (428)
T ss_pred eEEEEcCC--chHHHHHHHHhc----CCceeEEEEeCCCC
Confidence 45554444 447999999874 45577788877654
No 135
>PF09388 SpoOE-like: Spo0E like sporulation regulatory protein; InterPro: IPR018540 Spore formation is an extreme response to starvation and can also be a component of disease transmission. Sporulation is controlled by an expanded two-component system where starvation signals result in sensor kinase activation and phosphorylation of the master sporulation response regulator Spo0A. Phosphatases such as Spo0E dephosphorylate Spo0A thereby inhibiting sporulation. This is a family of Spo0E-like phosphatases. The structure of a Bacillus anthracis member of this family has revealed an anti-parallel alpha-helical structure []. ; PDB: 2BZB_B 2C0S_A.
Probab=44.88 E-value=24 Score=25.13 Aligned_cols=36 Identities=19% Similarity=0.277 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044284 286 VEDDVKRLKMELKQTMDMYNAACKEALAAKQKAVEL 321 (421)
Q Consensus 286 ~eaEm~rLrlELk~tm~my~~AckEa~~Akqk~~eL 321 (421)
+..+++.+|.+|-+..+-|+-.-.+.+..+|++.+|
T Consensus 2 L~~~Ie~~R~~L~~~~~~~~l~~~~vl~~Sq~LD~l 37 (45)
T PF09388_consen 2 LLEEIEELRQELNELAEKKGLTDPEVLELSQELDKL 37 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHCCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 567899999999999999888889999999998766
No 136
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=44.81 E-value=68 Score=30.87 Aligned_cols=53 Identities=23% Similarity=0.320 Sum_probs=43.2
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---hHHHhhhhhhh
Q 044284 283 MEDVEDDVKRLKMELKQTMDMYNAACKEALAAKQKAVELEKW---KMKEEKRLKET 335 (421)
Q Consensus 283 ~~~~eaEm~rLrlELk~tm~my~~AckEa~~Akqk~~eL~~~---~~EE~~k~eea 335 (421)
.|.+++|..+|+-||+.+..-++.|.+....-+++..++++. =.||-.++++.
T Consensus 153 ~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~ 208 (216)
T KOG1962|consen 153 NDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQ 208 (216)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 588899999999999999999999999988888888887765 24455555544
No 137
>PTZ00323 NAD+ synthase; Provisional
Probab=44.67 E-value=2.3e+02 Score=28.46 Aligned_cols=40 Identities=18% Similarity=0.002 Sum_probs=25.2
Q ss_pred CCEEEEccCCCHHHHHHHHHHHHHHhcCC-CEEEEEEEecC
Q 044284 18 EKIVAVAIDKDKFSQHALKWAADNILSRH-QTIKLVHVIQK 57 (421)
Q Consensus 18 ~~~IlVAVDgS~~S~~ALkwAid~a~~~g-a~I~LlHV~~~ 57 (421)
.+.++|++.|.-.|--++.-|.+-+...+ ....++.|..|
T Consensus 46 ~~~vVVglSGGVDSav~aaLa~~alg~~~~~~~~~~~v~~P 86 (294)
T PTZ00323 46 LKGCVTSVSGGIDSAVVLALCARAMRMPNSPIQKNVGLCQP 86 (294)
T ss_pred CCcEEEECCCCHHHHHHHHHHHHHhccccCCceEEEEEECC
Confidence 57899999999766666655666553323 22445555544
No 138
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=44.62 E-value=1.6e+02 Score=29.96 Aligned_cols=41 Identities=17% Similarity=0.019 Sum_probs=30.4
Q ss_pred CCEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCC
Q 044284 18 EKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKS 58 (421)
Q Consensus 18 ~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~ 58 (421)
+.+++|+..|.+.|.-.|.-|...+...+..+-+|||-+..
T Consensus 37 f~~~~v~~SgGKDS~VlLhLa~kaf~~~~~~~pvl~VDTG~ 77 (312)
T PRK12563 37 CSKPVMLYSIGKDSVVMLHLAMKAFRPTRPPFPLLHVDTTW 77 (312)
T ss_pred cCCcEEEecCChHHHHHHHHHHHhhcccCCCeeEEEeCCCC
Confidence 45678899999998888877766664445568899986544
No 139
>PF12107 VEK-30: Plasminogen (Pg) ligand in fibrinolytic pathway; InterPro: IPR021965 Pg is an important mediator of angiostatin production in the fibrinolytic pathway. Pg is made up of five subunit kringle molecules (Pg-K1 to Pg-K5), of which the first three make the protein angiostatin. VEK-30 is a domain of the group A streptococcal protein PAM. It binds to Pg-K2 of angiostatin and activates the molecule to mediate its anti-angiogenic effects. VEK-30 binds to angiostatin via a C-terminal lysine with argininyl and glutamyl side chain residues known as a 'through space isostere' [].; PDB: 2KJ4_B 2DOI_B 2DOH_C 1I5K_D.
Probab=43.81 E-value=21 Score=20.43 Aligned_cols=10 Identities=50% Similarity=0.744 Sum_probs=8.0
Q ss_pred HHHHHHHHHH
Q 044284 287 EDDVKRLKME 296 (421)
Q Consensus 287 eaEm~rLrlE 296 (421)
++|++|||-|
T Consensus 2 ~aeLerLkne 11 (17)
T PF12107_consen 2 EAELERLKNE 11 (17)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHh
Confidence 5788899876
No 140
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=43.49 E-value=79 Score=28.95 Aligned_cols=40 Identities=20% Similarity=0.360 Sum_probs=31.7
Q ss_pred hhhcCCceEEEEEEcCCHHHHHHHHH---HHcCCCEEEEcCCC
Q 044284 93 CTRRHIQCELVVLERQDVARALIEYV---SQYGVETMLLGAPT 132 (421)
Q Consensus 93 c~~~gV~~e~vvleg~dva~aIve~A---~~~~idlIVmGs~g 132 (421)
+++.||.++..++--+-.++.+.+|| .+.+++.||-|+-|
T Consensus 25 L~~fgi~ye~~VvSAHRTPe~m~~ya~~a~~~g~~viIAgAGg 67 (162)
T COG0041 25 LEEFGVPYEVRVVSAHRTPEKMFEYAEEAEERGVKVIIAGAGG 67 (162)
T ss_pred HHHcCCCeEEEEEeccCCHHHHHHHHHHHHHCCCeEEEecCcc
Confidence 34459999999998777777777776 66788899999876
No 141
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=43.43 E-value=70 Score=30.15 Aligned_cols=43 Identities=26% Similarity=0.384 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHhHHhHHHhhhhhhhhhchh---hhHHHHHHHHH
Q 044284 309 KEALAAKQKAVELEKWKMKEEKRLKETQMGEE---RGKAKIKAAIE 351 (421)
Q Consensus 309 kEa~~Akqk~~eL~~~~~EE~~k~eea~~~eE---~EKak~~aA~e 351 (421)
-+.+.+.|-+++..+.|+.|+..-+-+..+|+ .|.+|.+.+|+
T Consensus 75 pd~v~~rqEa~eaAR~RmQEE~dakA~~~kEKq~q~EEEKRrqkie 120 (190)
T PF06936_consen 75 PDVVVRRQEAMEAARRRMQEELDAKAEEYKEKQKQEEEEKRRQKIE 120 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677778888888888755443333333 44455555554
No 142
>cd07678 F-BAR_FCHSD1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains 1 (FCHSD1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH and double SH3 domains 1 (FCHSD1) contains an N-terminal F-BAR domain and two SH3 domains at the C-terminus. It has been characterized only in silico, and its biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=43.26 E-value=1.8e+02 Score=28.87 Aligned_cols=40 Identities=20% Similarity=0.321 Sum_probs=33.0
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 044284 284 EDVEDDVKRLKMELKQTMDMYNAACKEALAAKQKAVELEK 323 (421)
Q Consensus 284 ~~~eaEm~rLrlELk~tm~my~~AckEa~~Akqk~~eL~~ 323 (421)
..+..||.+-=.||.-++..|..+|+||-.|++|+.|...
T Consensus 119 ~~lQ~eL~~~~keL~ksKK~Y~~~~~ea~~A~~K~~e~e~ 158 (263)
T cd07678 119 QKAQAELLETVKELSKSKKLYGQLERVSEVAKEKAADVEA 158 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777788999999999999999999999887644
No 143
>PF06409 NPIP: Nuclear pore complex interacting protein (NPIP); InterPro: IPR009443 This family consists of a series of primate specific nuclear pore complex interacting protein (NPIP) sequences. The function of this family is unknown but is well conserved from African apes to humans [].
Probab=43.15 E-value=2.4e+02 Score=27.60 Aligned_cols=50 Identities=18% Similarity=0.239 Sum_probs=24.1
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhHHhHHHhhhhhhh
Q 044284 284 EDVEDDVKRLKMELKQTMDMYNAACKEALAAKQ---KAVELEKWKMKEEKRLKET 335 (421)
Q Consensus 284 ~~~eaEm~rLrlELk~tm~my~~AckEa~~Akq---k~~eL~~~~~EE~~k~eea 335 (421)
-.++||+++.|.- .-++-+..-+..--+|++ |+..-+....|.|++|.||
T Consensus 94 akvraei~~mkVt--~kvn~h~kI~g~rKtA~~~~rKl~~ke~E~~EKErqlSeA 146 (265)
T PF06409_consen 94 AKVRAEIRKMKVT--TKVNSHYKINGKRKTAKKHLRKLSMKECEHAEKERQLSEA 146 (265)
T ss_pred HHHHHHHHHHHHH--HHhhhHHHHhhHHHhhHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 4567788766543 223333333333334443 3333334445556666554
No 144
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=42.40 E-value=2.4e+02 Score=29.95 Aligned_cols=77 Identities=22% Similarity=0.381 Sum_probs=42.1
Q ss_pred ChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHhhhhhhhhhchhhhHHHHHHHHHHHHHHHHHHH
Q 044284 282 NMEDVEDDVKRLKMELKQTMDMYNAACKEALAAKQKAVELEKWKMKEEKRLKETQMGEERGKAKIKAAIEAAEAAQKIAK 361 (421)
Q Consensus 282 ~~~~~eaEm~rLrlELk~tm~my~~AckEa~~Akqk~~eL~~~~~EE~~k~eea~~~eE~EKak~~aA~eaaE~ak~~ae 361 (421)
-.|-+.+|++|||.-|.-.+.-| + .+|.+.+.|| +-.+|..+ ++..|-+ +.+-.
T Consensus 254 hi~~l~~EveRlrt~l~~Aqk~~----------~---ek~~qy~~Ee-~~~reen~---rlQrkL~---------~e~er 307 (552)
T KOG2129|consen 254 HIDKLQAEVERLRTYLSRAQKSY----------Q---EKLMQYRAEE-VDHREENE---RLQRKLI---------NELER 307 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------H---HHHHHHHHHH-hhHHHHHH---HHHHHHH---------HHHHH
Confidence 34667888999888776543322 2 2344554333 32222222 2222222 34556
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHH
Q 044284 362 LEVQKRVNAEAKALKEAEEKRKL 384 (421)
Q Consensus 362 ~EaqkR~~aE~kA~~e~~ek~k~ 384 (421)
+||.-|+.-|-...-|.+|..=.
T Consensus 308 Realcr~lsEsesslemdeery~ 330 (552)
T KOG2129|consen 308 REALCRMLSESESSLEMDEERYL 330 (552)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHH
Confidence 67778888887777777765443
No 145
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=41.98 E-value=1.2e+02 Score=28.60 Aligned_cols=38 Identities=11% Similarity=-0.042 Sum_probs=25.3
Q ss_pred CCCEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCC
Q 044284 17 REKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKS 58 (421)
Q Consensus 17 ~~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~ 58 (421)
...++++-+.|.-.|--|. -++..+|.+|+.||...++
T Consensus 2 t~gk~l~LlSGGiDSpVAa----~lm~krG~~V~~l~f~~~~ 39 (197)
T PF02568_consen 2 TQGKALALLSGGIDSPVAA----WLMMKRGCEVIALHFDSPP 39 (197)
T ss_dssp TT-EEEEE-SSCCHHHHHH----HHHHCBT-EEEEEEEE-TT
T ss_pred CCceEEEEecCCccHHHHH----HHHHHCCCEEEEEEEECCC
Confidence 3468899999987776654 3455579999999998544
No 146
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=41.84 E-value=50 Score=29.98 Aligned_cols=66 Identities=23% Similarity=0.265 Sum_probs=38.9
Q ss_pred HHHHHHhhhcCCceEEEEEEcCCHHHHHHHHHHHc---CCCEEEEcCCCCCCCcccccccccccccccchhcccCCCcce
Q 044284 87 LPFRCYCTRRHIQCELVVLERQDVARALIEYVSQY---GVETMLLGAPTKNGLSRSSFCRLFKASDTPGTVLKWAPDFCN 163 (421)
Q Consensus 87 ~~~r~~c~~~gV~~e~vvleg~dva~aIve~A~~~---~idlIVmGs~gr~~f~~~~~~r~~~~~sVa~~V~k~Ap~~C~ 163 (421)
++.+..|++.||.++..+.--+--.+.+.+++++. +++.||.++-.-++| |.-|.-.++ +|
T Consensus 17 ~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~~~~~~~viIa~AG~~a~L--------------pgvva~~t~--~P 80 (150)
T PF00731_consen 17 EEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEYEARGADVIIAVAGMSAAL--------------PGVVASLTT--LP 80 (150)
T ss_dssp HHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHTTTTTESEEEEEEESS--H--------------HHHHHHHSS--S-
T ss_pred HHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHhccCCCEEEEEECCCcccc--------------hhhheeccC--CC
Confidence 34444555668999988877666677888888775 578777666433333 333344455 89
Q ss_pred EEEEe
Q 044284 164 VYIVS 168 (421)
Q Consensus 164 V~VV~ 168 (421)
|+-|+
T Consensus 81 VIgvP 85 (150)
T PF00731_consen 81 VIGVP 85 (150)
T ss_dssp EEEEE
T ss_pred EEEee
Confidence 98886
No 147
>PHA03155 hypothetical protein; Provisional
Probab=41.72 E-value=30 Score=29.88 Aligned_cols=22 Identities=27% Similarity=0.572 Sum_probs=19.3
Q ss_pred CCCChhcHHHHHHHHHHHHHHH
Q 044284 279 SSQNMEDVEDDVKRLKMELKQT 300 (421)
Q Consensus 279 ~s~~~~~~eaEm~rLrlELk~t 300 (421)
.+-+++++.+|+.||++|-|+.
T Consensus 6 ~~~tvEeLaaeL~kL~~ENK~L 27 (115)
T PHA03155 6 ACADVEELEKELQKLKIENKAL 27 (115)
T ss_pred CCCCHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999998886
No 148
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=41.64 E-value=3e+02 Score=25.72 Aligned_cols=31 Identities=26% Similarity=0.488 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 044284 290 VKRLKMELKQTMDMYNAACKEALA-AKQKAVE 320 (421)
Q Consensus 290 m~rLrlELk~tm~my~~AckEa~~-Akqk~~e 320 (421)
+.|+|-|++.|++.|.+--+.++. .-+|+.+
T Consensus 86 L~rvrde~~~~l~~y~~l~~s~~~f~~rk~l~ 117 (189)
T PF10211_consen 86 LLRVRDEYRMTLDAYQTLYESSIAFGMRKALQ 117 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 779999999999998766665555 3444433
No 149
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=41.56 E-value=3.4e+02 Score=26.38 Aligned_cols=20 Identities=25% Similarity=0.429 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 044284 398 QSLFHILVVLILFYFYFTVL 417 (421)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~ 417 (421)
..|--+++|++||-+-+|++
T Consensus 152 ~gi~aml~Vf~LF~lvmt~g 171 (230)
T PF03904_consen 152 KGIGAMLFVFMLFALVMTIG 171 (230)
T ss_pred HhHHHHHHHHHHHHHHHHhc
Confidence 34455666666666666554
No 150
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=41.09 E-value=2.5e+02 Score=32.78 Aligned_cols=16 Identities=31% Similarity=0.430 Sum_probs=8.3
Q ss_pred ChhcHHHHHHHHHHHH
Q 044284 282 NMEDVEDDVKRLKMEL 297 (421)
Q Consensus 282 ~~~~~eaEm~rLrlEL 297 (421)
..++|+.=|..|+.=.
T Consensus 774 t~eev~~a~~~le~a~ 789 (1018)
T KOG2002|consen 774 TLEEVLEAVKELEEAR 789 (1018)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 3455555555555433
No 151
>TIGR00552 nadE NAD+ synthetase. NAD+ synthetase is a nearly ubiquitous enzyme for the final step in the biosynthesis of the essensial cofactor NAD. The member of this family from Bacillus subtilis is a strictly NH(3)-dependent NAD(+) synthetase of 272 amino acids. Proteins consisting only of the domain modeled here may be named as NH3-dependent NAD+ synthetase. Amidotransferase activity may reside in a separate protein, or not be present. Some other members of the family, such as from Mycobacterium tuberculosis, are considerably longer, contain an apparent amidotransferase domain, and show glutamine-dependent as well as NH(3)-dependent activity.
Probab=40.88 E-value=1.5e+02 Score=28.66 Aligned_cols=37 Identities=8% Similarity=0.003 Sum_probs=25.6
Q ss_pred CCCEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEec
Q 044284 17 REKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQ 56 (421)
Q Consensus 17 ~~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~ 56 (421)
...+|+|++.|...|--++..+.+.+ +..++.+|+.+
T Consensus 21 ~~~~V~vglSGGiDSsvla~l~~~~~---~~~~~~~~~~~ 57 (250)
T TIGR00552 21 GAKGVVLGLSGGIDSAVVAALCVEAL---GEQNHALLLPH 57 (250)
T ss_pred CCCCEEEECCCcHHHHHHHHHHHHhh---CCceEEEEECC
Confidence 35789999999988776655554433 33677777754
No 152
>smart00224 GGL G protein gamma subunit-like motifs.
Probab=40.78 E-value=25 Score=26.97 Aligned_cols=28 Identities=21% Similarity=0.341 Sum_probs=21.4
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044284 284 EDVEDDVKRLKMELKQTMDMYNAACKEA 311 (421)
Q Consensus 284 ~~~eaEm~rLrlELk~tm~my~~AckEa 311 (421)
+.+..|+++||.||.-.--.=+.||.+.
T Consensus 2 ~~~~~~ve~Lr~el~~~RikvS~a~~~l 29 (63)
T smart00224 2 DQLRKEVEQLRKELSRERIKVSKAAEEL 29 (63)
T ss_pred hHHHHHHHHHHHHHCCceehHHHHHHHH
Confidence 5678899999999988766666666653
No 153
>KOG4119 consensus G protein gamma subunit [Signal transduction mechanisms]
Probab=40.59 E-value=60 Score=25.80 Aligned_cols=37 Identities=19% Similarity=0.210 Sum_probs=29.3
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHh
Q 044284 283 MEDVEDDVKRLKMELKQTMDMYNAACKEALAAKQKAVELEKWKMKEE 329 (421)
Q Consensus 283 ~~~~eaEm~rLrlELk~tm~my~~AckEa~~Akqk~~eL~~~~~EE~ 329 (421)
...+..+++.||+|+.-.-.+.+.||+| |..|+.+-+
T Consensus 9 ~~q~k~~VeqLk~e~~~~R~~vS~a~~e----------l~~y~E~~~ 45 (71)
T KOG4119|consen 9 KPQMKKEVEQLKLEANIERIKVSKAAAE----------LLEYCETHA 45 (71)
T ss_pred hHHHHHHHHHHHHHHHhhHhhHHHHHHH----------HHHHHHhcC
Confidence 5677889999999999988888888877 666665443
No 154
>cd03364 TOPRIM_DnaG_primases TOPRIM_DnaG_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of proteins similar to Escherichia coli DnaG. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. E. coli DnaG is a single subunit enzyme.
Probab=40.11 E-value=72 Score=24.91 Aligned_cols=34 Identities=26% Similarity=0.270 Sum_probs=28.4
Q ss_pred CCEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEE
Q 044284 18 EKIVAVAIDKDKFSQHALKWAADNILSRHQTIKL 51 (421)
Q Consensus 18 ~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~L 51 (421)
.++|.++.|.|+..+.|.+-..+.+...|-.+.+
T Consensus 43 ~~~vii~~D~D~aG~~a~~~~~~~l~~~g~~~~~ 76 (79)
T cd03364 43 AKEVILAFDGDEAGQKAALRALELLLKLGLNVRV 76 (79)
T ss_pred CCeEEEEECCCHHHHHHHHHHHHHHHHCCCeEEE
Confidence 3799999999999999998888888777765543
No 155
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=39.84 E-value=6.1e+02 Score=31.05 Aligned_cols=16 Identities=19% Similarity=0.557 Sum_probs=9.8
Q ss_pred CChhcHHHHHHHHHHH
Q 044284 281 QNMEDVEDDVKRLKME 296 (421)
Q Consensus 281 ~~~~~~eaEm~rLrlE 296 (421)
.+++.++.++++|+.+
T Consensus 230 ~~~~~~~~~le~l~~~ 245 (1353)
T TIGR02680 230 EQLDEYRDELERLEAL 245 (1353)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4456677766666643
No 156
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=39.66 E-value=4.2e+02 Score=26.91 Aligned_cols=93 Identities=23% Similarity=0.309 Sum_probs=53.7
Q ss_pred ChhcHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHhHHhHHHhhhhhhhhhch-h---------
Q 044284 282 NMEDVEDDVKRLKMELKQTM-----------DMYNAACKEALAAKQKAVELEKWKMKEEKRLKETQMGE-E--------- 340 (421)
Q Consensus 282 ~~~~~eaEm~rLrlELk~tm-----------~my~~AckEa~~Akqk~~eL~~~~~EE~~k~eea~~~e-E--------- 340 (421)
....+|.|-.+||.|-.+.- .+-.--+++...|++++..|+.. =++|.++...-. |
T Consensus 168 Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseE---La~k~Ee~~rQQEEIt~Llsqiv 244 (306)
T PF04849_consen 168 KLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEE---LARKTEENRRQQEEITSLLSQIV 244 (306)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34778889999997765543 12223467888888888877643 133333333222 2
Q ss_pred hhHHHHHH-HHHHHHHHHHH-HHHHHHHHHHHHHhhhHH
Q 044284 341 RGKAKIKA-AIEAAEAAQKI-AKLEVQKRVNAEAKALKE 377 (421)
Q Consensus 341 ~EKak~~a-A~eaaE~ak~~-ae~EaqkR~~aE~kA~~e 377 (421)
.-..|++. +.|..|..+.+ +.+++|....+|++-+++
T Consensus 245 dlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqd 283 (306)
T PF04849_consen 245 DLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQD 283 (306)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22223333 34444444544 347889888888765554
No 157
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=39.32 E-value=3.1e+02 Score=26.27 Aligned_cols=36 Identities=25% Similarity=0.325 Sum_probs=24.3
Q ss_pred hcHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 044284 284 EDVEDDVKRLK-------MELKQTMDMYNAACKEALAAKQKAV 319 (421)
Q Consensus 284 ~~~eaEm~rLr-------lELk~tm~my~~AckEa~~Akqk~~ 319 (421)
..++.+|.++. ..|.....-|..+|+|+=.|.++..
T Consensus 102 K~~~~~~~k~qk~~~~~~~~l~KaKk~Y~~~C~e~e~a~~~~~ 144 (239)
T cd07647 102 KKTEDIMKRSQKNKKELYKKTMKAKKSYEQKCREKDKAEQAYE 144 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455565555 4556667789999999888877753
No 158
>PF05917 DUF874: Helicobacter pylori protein of unknown function (DUF874); InterPro: IPR008592 This family consists of several hypothetical proteins specific to Helicobacter pylori. The function of this family is unknown.
Probab=38.55 E-value=2.2e+02 Score=28.82 Aligned_cols=75 Identities=23% Similarity=0.163 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHhHHhHHHhhhhhhhh-------hchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 044284 308 CKEALAAKQKAVELEKWKMKEEKRLKETQ-------MGEERGKAKIKAAIEAAEAAQKIAKLEVQKRVNAEAKALKEAEE 380 (421)
Q Consensus 308 ckEa~~Akqk~~eL~~~~~EE~~k~eea~-------~~eE~EKak~~aA~eaaE~ak~~ae~EaqkR~~aE~kA~~e~~e 380 (421)
.+|+=.|.+|++.-...-..|.+|-+..+ ..-|+||.|...--..++..+--.|.|-|+..+..-+..++-.+
T Consensus 133 kkeaEnaRdkANKSgIELEQErQKT~q~~~e~~n~qiK~EQEKQKTeqEkQk~~ksqIklEQEkQKT~qeqqkliKeQKD 212 (398)
T PF05917_consen 133 KKEAENARDKANKSGIELEQERQKTEQEGIETTNNQIKVEQEKQKTEQEKQKENKSQIKLEQEKQKTEQEQQKLIKEQKD 212 (398)
T ss_pred HHHhhhhhhhhccccchHHHHHHHHHHHhhhhhHhHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666677777633222223333333332 22225666555444446666666777777777777666666554
Q ss_pred HH
Q 044284 381 KR 382 (421)
Q Consensus 381 k~ 382 (421)
-.
T Consensus 213 fI 214 (398)
T PF05917_consen 213 FI 214 (398)
T ss_pred HH
Confidence 43
No 159
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=37.98 E-value=8.9 Score=32.29 Aligned_cols=18 Identities=50% Similarity=0.962 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 044284 401 FHILVVLILFYFYFTVLRK 419 (421)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~ 419 (421)
|-|+|+|++.| ||-+||+
T Consensus 72 v~IlVily~Iy-YFVILRe 89 (101)
T PF06024_consen 72 VCILVILYAIY-YFVILRE 89 (101)
T ss_pred HHHHHHHhhhe-EEEEEec
Confidence 44444444444 5555553
No 160
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=37.43 E-value=6.8e+02 Score=29.06 Aligned_cols=83 Identities=22% Similarity=0.237 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHH------HHHHHHHHHHHHhHHhHHHhhhhhhhhhchh-hhHHHHHHHHHHHHH---HHHHHHHHH
Q 044284 295 MELKQTMDMYNAACK------EALAAKQKAVELEKWKMKEEKRLKETQMGEE-RGKAKIKAAIEAAEA---AQKIAKLEV 364 (421)
Q Consensus 295 lELk~tm~my~~Ack------Ea~~Akqk~~eL~~~~~EE~~k~eea~~~eE-~EKak~~aA~eaaE~---ak~~ae~Ea 364 (421)
.-+++...+|..+.+ +.+.|.+++.|..+...|- +.-.+.+|+ .|.++....-++||. .+...|.|+
T Consensus 543 ~~~~~~~~~v~~~~~~v~~E~krilaRk~liE~rKe~~E~---~~~~re~Eea~~q~~e~~~~r~aE~kRl~ee~~Ere~ 619 (988)
T KOG2072|consen 543 SRAKKKEGAVTNYLKNVDKEHKRILARKSLIEKRKEDLEK---QNVEREAEEAQEQAKEQRQAREAEEKRLIEEKKEREA 619 (988)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667766654 4677787777766554443 233333343 333333333333332 233344444
Q ss_pred HHHHHHHHhhhHHHHHH
Q 044284 365 QKRVNAEAKALKEAEEK 381 (421)
Q Consensus 365 qkR~~aE~kA~~e~~ek 381 (421)
+|+..|.++.++.+-|
T Consensus 620 -~R~l~E~e~i~~k~~k 635 (988)
T KOG2072|consen 620 -KRILREKEAIRKKELK 635 (988)
T ss_pred -HHHHHHHHHHHHHHHH
Confidence 3455666665554333
No 161
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.43 E-value=6.1e+02 Score=28.08 Aligned_cols=30 Identities=30% Similarity=0.439 Sum_probs=22.6
Q ss_pred CCCChhcHHHHHHHHHHHHHHHHHHHHHHH
Q 044284 279 SSQNMEDVEDDVKRLKMELKQTMDMYNAAC 308 (421)
Q Consensus 279 ~s~~~~~~eaEm~rLrlELk~tm~my~~Ac 308 (421)
.-+..+++..|++||-.||-||..--..|.
T Consensus 6 aeq~ve~lr~eierLT~el~q~t~e~~qaA 35 (772)
T KOG0999|consen 6 AEQEVEKLRQEIERLTEELEQTTEEKIQAA 35 (772)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346678899999999999998876554444
No 162
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=37.40 E-value=45 Score=28.18 Aligned_cols=48 Identities=17% Similarity=0.315 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHcCCCEEEEcCCCCCCCcccccccccccccccchhcccCCCcceEEEEeCCccc
Q 044284 110 VARALIEYVSQYGVETMLLGAPTKNGLSRSSFCRLFKASDTPGTVLKWAPDFCNVYIVSKGKCH 173 (421)
Q Consensus 110 va~aIve~A~~~~idlIVmGs~gr~~f~~~~~~r~~~~~sVa~~V~k~Ap~~C~V~VV~kgk~~ 173 (421)
++.+.++.|.+.++..||+=+.+ |.++..+.+.=|. ||||++...+-.
T Consensus 4 ia~aa~~~A~~~~ak~Ivv~T~s---------------G~ta~~isk~RP~-~pIiavt~~~~~ 51 (117)
T PF02887_consen 4 IARAAVELAEDLNAKAIVVFTES---------------GRTARLISKYRPK-VPIIAVTPNESV 51 (117)
T ss_dssp HHHHHHHHHHHHTESEEEEE-SS---------------SHHHHHHHHT-TS-SEEEEEESSHHH
T ss_pred HHHHHHHHHHhcCCCEEEEECCC---------------chHHHHHHhhCCC-CeEEEEcCcHHH
Confidence 67888999999999999987763 2345556666664 999999876543
No 163
>PF00631 G-gamma: GGL domain; InterPro: IPR015898 This entry represents the G protein gamma subunit and the GGL (G protein gamma-like) domain, which are related in sequence and are comprised of an extended alpha-helical polypeptide. The G protein gamma subunit forms a stable dimer with the beta subunit, but it does not make any contact with the alpha subunit, which contacts the opposite face of the beta subunit. The GGL domain is found in several RGS (regulators of G protein signaling) proteins. GGL domains can interact with beta subunits to form novel dimers that prevent gamma subunit binding, and may prevent heterotrimer formation by inhibiting alpha subunit binding. The interaction between G protein beta-5 neuro-specific isoforms and RGS GGL domains may represent a general mode of binding between beta-propeller proteins and their partners [].; GO: 0004871 signal transducer activity, 0007186 G-protein coupled receptor protein signaling pathway, 0005834 heterotrimeric G-protein complex; PDB: 3PSC_G 3SN6_G 1OMW_G 2BCJ_G 1GG2_G 3PVW_G 3PVU_G 3AH8_G 3CIK_G 1GP2_G ....
Probab=36.96 E-value=33 Score=26.55 Aligned_cols=31 Identities=23% Similarity=0.475 Sum_probs=21.3
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044284 283 MEDVEDDVKRLKMELKQTMDMYNAACKEALA 313 (421)
Q Consensus 283 ~~~~eaEm~rLrlELk~tm~my~~AckEa~~ 313 (421)
.+.+.-|+..||.||...--.=+.||++.+.
T Consensus 4 ~~~l~~ei~~L~~el~~~r~~vS~a~~~li~ 34 (68)
T PF00631_consen 4 KDQLKREIEQLRQELERERIKVSKACKELIE 34 (68)
T ss_dssp HHHHHHHHHHHHHHHTS----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccceeHHHHHHHHHH
Confidence 4677888999999988766677778877654
No 164
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=36.86 E-value=5.9e+02 Score=29.20 Aligned_cols=21 Identities=19% Similarity=0.146 Sum_probs=14.4
Q ss_pred CHHHHHHHHHHHcCCCEEEEc
Q 044284 109 DVARALIEYVSQYGVETMLLG 129 (421)
Q Consensus 109 dva~aIve~A~~~~idlIVmG 129 (421)
|..-+...++...+...-.+.
T Consensus 276 D~l~a~a~~a~~~~~~~P~~~ 296 (782)
T PRK00409 276 DFIFARARYAKALKATFPLFN 296 (782)
T ss_pred HHHHHHHHHHHHCCCccceEc
Confidence 566677778887777665554
No 165
>KOG2357 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.52 E-value=1.1e+02 Score=32.35 Aligned_cols=29 Identities=17% Similarity=0.011 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHhHHhHHHhhhhhhhhhc
Q 044284 310 EALAAKQKAVELEKWKMKEEKRLKETQMG 338 (421)
Q Consensus 310 Ea~~Akqk~~eL~~~~~EE~~k~eea~~~ 338 (421)
=.-.|++|+.-..+|..|+..|+-++...
T Consensus 360 lS~~~k~kt~~~RQ~~~e~~~K~th~~rq 388 (440)
T KOG2357|consen 360 LSKDAKAKTDKNRQRVEEEFLKLTHAARQ 388 (440)
T ss_pred chHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 45578888888999988887776555443
No 166
>cd00068 GGL G protein gamma subunit-like motifs, the alpha-helical G-gamma chain dimerizes with the G-beta propeller subunit as part of the heterotrimeric G-protein complex; involved in signal transduction via G-protein-coupled receptors
Probab=36.51 E-value=42 Score=25.25 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=19.3
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044284 284 EDVEDDVKRLKMELKQTMDMYNAACKE 310 (421)
Q Consensus 284 ~~~eaEm~rLrlELk~tm~my~~AckE 310 (421)
+.+..|+++||.||.-.--.=+.||.+
T Consensus 2 ~~~~~~veqLr~el~~~RikvS~a~~~ 28 (57)
T cd00068 2 DQLKKEVEQLRKELSRERLKVSKAAAE 28 (57)
T ss_pred HHHHHHHHHHHHHHCCchhhHHHHHHH
Confidence 467788999999998765555555544
No 167
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=36.41 E-value=45 Score=29.11 Aligned_cols=20 Identities=30% Similarity=0.534 Sum_probs=17.3
Q ss_pred ChhcHHHHHHHHHHHHHHHH
Q 044284 282 NMEDVEDDVKRLKMELKQTM 301 (421)
Q Consensus 282 ~~~~~eaEm~rLrlELk~tm 301 (421)
+++++.+|+-||++|-|+.-
T Consensus 4 t~EeLaaeL~kLqmENk~LK 23 (118)
T PF05812_consen 4 TMEELAAELQKLQMENKALK 23 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999988763
No 168
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=36.00 E-value=8.5e+02 Score=29.34 Aligned_cols=19 Identities=11% Similarity=0.289 Sum_probs=8.4
Q ss_pred hhcHHHHHHHHHHHHHHHH
Q 044284 283 MEDVEDDVKRLKMELKQTM 301 (421)
Q Consensus 283 ~~~~eaEm~rLrlELk~tm 301 (421)
.+.++.++..+...|....
T Consensus 602 ee~L~~~l~~~~~~l~~~~ 620 (1201)
T PF12128_consen 602 EEELRERLEQAEDQLQSAE 620 (1201)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3445555544444433333
No 169
>PF15013 CCSMST1: CCSMST1 family
Probab=35.59 E-value=17 Score=29.35 Aligned_cols=37 Identities=19% Similarity=0.355 Sum_probs=22.3
Q ss_pred HHHHHHhcCccchhhHHHHHHHHHHHHHHHHHHHhhc
Q 044284 383 KLLDALWQSHMVLKYQSLFHILVVLILFYFYFTVLRK 419 (421)
Q Consensus 383 k~~~al~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (421)
++...+.....+.-+|...-|.+-|..|-+||-+||.
T Consensus 16 ~v~~s~~~~~~~~PWyq~~~is~sl~~fliyFC~lRe 52 (77)
T PF15013_consen 16 TVEHSRGGKQQRMPWYQVYPISLSLAAFLIYFCFLRE 52 (77)
T ss_pred ccccccCCCCCCCcceeeehhHHHHHHHHHHHhhccc
Confidence 4445566555553344444555566667788888885
No 170
>PRK08005 epimerase; Validated
Probab=35.30 E-value=2.3e+02 Score=27.06 Aligned_cols=28 Identities=7% Similarity=0.235 Sum_probs=21.7
Q ss_pred EEEEcCCHHHHHHHHHHHcCCCEEEEcCC
Q 044284 103 VVLERQDVARALIEYVSQYGVETMLLGAP 131 (421)
Q Consensus 103 vvleg~dva~aIve~A~~~~idlIVmGs~ 131 (421)
+-++| -+-..-+..+.+.|+|.+|+|+.
T Consensus 166 I~VDG-GI~~~~i~~l~~aGad~~V~Gsa 193 (210)
T PRK08005 166 CWADG-GITLRAARLLAAAGAQHLVIGRA 193 (210)
T ss_pred EEEEC-CCCHHHHHHHHHCCCCEEEEChH
Confidence 33455 47777788888999999999964
No 171
>PF05890 Ebp2: Eukaryotic rRNA processing protein EBP2; InterPro: IPR008610 This family consists of several eukaryotic rRNA processing protein EBP2 sequences. Ebp2p is required for the maturation of 25S rRNA and 60S subunit assembly. Ebp2p may be one of the target proteins of Rrs1p for executing the signal to regulate ribosome biogenesis [].
Probab=34.87 E-value=4.7e+02 Score=26.01 Aligned_cols=84 Identities=25% Similarity=0.358 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH------------HhHHHh-hhhhhhhhchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 044284 298 KQTMDMYNAACKEALAAKQKAVELEK------------WKMKEE-KRLKETQMGEERGKAKIKAAIEAAEAAQKIAKLEV 364 (421)
Q Consensus 298 k~tm~my~~AckEa~~Akqk~~eL~~------------~~~EE~-~k~eea~~~eE~EKak~~aA~eaaE~ak~~ae~Ea 364 (421)
+--|-.|..|..=++.|-.++.+|.. -|..+- .|+..-++. .+++++++|.++++-++--
T Consensus 76 ~RE~aFy~qAl~av~~a~~~L~~~gip~~RP~DYfAEMvKSD~HM~KVr~kLl~-------~~~~ie~~E~~rk~Re~KK 148 (271)
T PF05890_consen 76 KRELAFYKQALEAVKEARPRLKKLGIPFKRPDDYFAEMVKSDEHMEKVRQKLLK-------EQKRIEASEEARKQRELKK 148 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCcchHHHhcCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 33467899999888888888777632 122221 122222222 2466777777777765544
Q ss_pred H-HHHHHHHhhhHHHHHHHHHHHHHh
Q 044284 365 Q-KRVNAEAKALKEAEEKRKLLDALW 389 (421)
Q Consensus 365 q-kR~~aE~kA~~e~~ek~k~~~al~ 389 (421)
. |..++|....+ +.||+..++.+-
T Consensus 149 fgKqvQ~ek~~eR-~keKk~~le~Ik 173 (271)
T PF05890_consen 149 FGKQVQVEKLQER-AKEKKEMLEKIK 173 (271)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 3 44455555444 455556666554
No 172
>cd07677 F-BAR_FCHSD2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains 2 (FCHSD2). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH and double SH3 domains 2 (FCHSD2) contains an N-terminal F-BAR domain and two SH3 domains at the C-terminus. It has been characterized only in silico, and its biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=34.84 E-value=3.5e+02 Score=26.87 Aligned_cols=36 Identities=17% Similarity=0.269 Sum_probs=31.6
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044284 283 MEDVEDDVKRLKMELKQTMDMYNAACKEALAAKQKA 318 (421)
Q Consensus 283 ~~~~eaEm~rLrlELk~tm~my~~AckEa~~Akqk~ 318 (421)
...++.|+-.-=-||+.++..|..+|.++=.+++|+
T Consensus 119 ~~~lq~El~~~~~EL~KaKK~Y~~~cq~~e~~ReK~ 154 (260)
T cd07677 119 LTKIQAELQETVKDLAKGKKKYFETEQMAHAVREKA 154 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 367888888888999999999999999988888886
No 173
>COG1422 Predicted membrane protein [Function unknown]
Probab=34.83 E-value=68 Score=30.53 Aligned_cols=37 Identities=19% Similarity=0.226 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHH
Q 044284 289 DVKRLKMELKQTMDMYNAACKEALAAKQKAVELEKWKMK 327 (421)
Q Consensus 289 Em~rLrlELk~tm~my~~AckEa~~Akqk~~eL~~~~~E 327 (421)
+|+|+|.+.|.+++-+..|.++--.++ ++.|++.++|
T Consensus 73 km~~~qk~m~efq~e~~eA~~~~d~~~--lkkLq~~qme 109 (201)
T COG1422 73 KMKELQKMMKEFQKEFREAQESGDMKK--LKKLQEKQME 109 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHH--HHHHHHHHHH
No 174
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=34.54 E-value=2e+02 Score=27.43 Aligned_cols=44 Identities=14% Similarity=0.192 Sum_probs=29.3
Q ss_pred HHHHHHHhhhcCCceEEEEEEcCCHHHHHHHHHHHcCCCEEEEcCC
Q 044284 86 FLPFRCYCTRRHIQCELVVLERQDVARALIEYVSQYGVETMLLGAP 131 (421)
Q Consensus 86 L~~~r~~c~~~gV~~e~vvleg~dva~aIve~A~~~~idlIVmGs~ 131 (421)
+..++++..++|..+... +.|| +-..=+..+.+.|+|.+|+|+.
T Consensus 154 I~~l~~~~~~~~~~~~I~-vdGG-I~~eni~~l~~aGAd~vVvGSa 197 (220)
T PRK08883 154 LRAVRKMIDESGRDIRLE-IDGG-VKVDNIREIAEAGADMFVAGSA 197 (220)
T ss_pred HHHHHHHHHhcCCCeeEE-EECC-CCHHHHHHHHHcCCCEEEEeHH
Confidence 455555555556555432 3444 6666677788999999999965
No 175
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=34.42 E-value=4.1e+02 Score=25.22 Aligned_cols=36 Identities=22% Similarity=0.357 Sum_probs=21.9
Q ss_pred ChhcHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q 044284 282 NMEDVEDDVKRLKMELKQTMDMYNA---ACKEALAAKQK 317 (421)
Q Consensus 282 ~~~~~eaEm~rLrlELk~tm~my~~---AckEa~~Akqk 317 (421)
..+++|.|+.+|.-.|+.....++. |-++...|+++
T Consensus 3 ~i~~~E~~~~~le~~l~kl~K~~k~~~~agk~~~~a~~~ 41 (200)
T cd07639 3 AIEEVEAEVSELETRLEKLVKLGSGMLEGGRHYCAASRA 41 (200)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888888777665554443 33444445444
No 176
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=34.27 E-value=3.9e+02 Score=27.48 Aligned_cols=130 Identities=11% Similarity=0.139 Sum_probs=73.6
Q ss_pred EEEccC--C---CH---HHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHH
Q 044284 21 VAVAID--K---DK---FSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCY 92 (421)
Q Consensus 21 IlVAVD--g---S~---~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~ 92 (421)
++|++| | +. .....+-|-++.++..|+..+-+||.-.+.. ..+.+.+..+.+..+...
T Consensus 86 Lil~~e~tg~d~t~~gr~~~~~~~~sve~a~~~GAdAVk~lv~~~~d~--------------~~~~~~~~~~~l~rv~~e 151 (340)
T PRK12858 86 LLLSYEKTGYDATAPGRLPDLLDNWSVRRIKEAGADAVKLLLYYRPDE--------------DDAINDRKHAFVERVGAE 151 (340)
T ss_pred eEEEecccccccCCCCCCccccccccHHHHHHcCCCEEEEEEEeCCCc--------------chHHHHHHHHHHHHHHHH
Confidence 667776 2 21 2345788888999888887777777643210 112234556678888899
Q ss_pred hhhcCCceEEEE--EE-cCC----------HHHHHHH---HHH--HcCCCEEEEcCCCCCCCccccccccccc-------
Q 044284 93 CTRRHIQCELVV--LE-RQD----------VARALIE---YVS--QYGVETMLLGAPTKNGLSRSSFCRLFKA------- 147 (421)
Q Consensus 93 c~~~gV~~e~vv--le-g~d----------va~aIve---~A~--~~~idlIVmGs~gr~~f~~~~~~r~~~~------- 147 (421)
|.+.|+.+-..+ .. +.+ -.+.|+. .+. +.|+|.|=+--.+...+. .-+-.
T Consensus 152 c~~~giPlllE~l~y~~~~~~~~~~~~a~~~p~~V~~a~r~~~~~elGaDvlKve~p~~~~~v-----eg~~~~~~~~~~ 226 (340)
T PRK12858 152 CRANDIPFFLEPLTYDGKGSDKKAEEFAKVKPEKVIKTMEEFSKPRYGVDVLKVEVPVDMKFV-----EGFDGFEEAYTQ 226 (340)
T ss_pred HHHcCCceEEEEeccCCCccccccccccccCHHHHHHHHHHHhhhccCCeEEEeeCCCCcccc-----cccccccccccH
Confidence 999999864322 11 110 1223332 333 588998888766543221 11100
Q ss_pred c---cccchhcccCCCcceEEEEeCCc
Q 044284 148 S---DTPGTVLKWAPDFCNVYIVSKGK 171 (421)
Q Consensus 148 ~---sVa~~V~k~Ap~~C~V~VV~kgk 171 (421)
. ..-..+...+| .||+|.+-|+
T Consensus 227 ~~~~~~f~~~~~a~~--~P~vvlsgG~ 251 (340)
T PRK12858 227 EEAFKLFREQSDATD--LPFIFLSAGV 251 (340)
T ss_pred HHHHHHHHHHHhhCC--CCEEEECCCC
Confidence 0 11233455566 7888888775
No 177
>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC. Members of this protein family are the DndC protein from the dnd (degradation during electrophoresis) operon. The dnd phenotype reflects a sulfur-containing modification to DNA. This operon is sparsely and sporadically distributed among bactera; among the first eight examples are members from the Actinobacteria, Firmicutes, Gammaproteobacteria, Cyanobacteria. DndC is suggested to be a sulfurtransferase.
Probab=34.19 E-value=3.5e+02 Score=28.96 Aligned_cols=75 Identities=15% Similarity=0.038 Sum_probs=44.3
Q ss_pred CEEEEccCCCHHHHHHHHHHHHHHhc--CCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 044284 19 KIVAVAIDKDKFSQHALKWAADNILS--RHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRR 96 (421)
Q Consensus 19 ~~IlVAVDgS~~S~~ALkwAid~a~~--~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~ 96 (421)
...+|+..|.+.|..+|.-+.+.+.. .......|||+...+.+- .+ +.....++.+..+..++.+.
T Consensus 14 ~p~vV~fSGGKDSta~L~Lv~~Al~~lp~e~~~k~v~VI~~DTgvE-------~P-----e~~~~v~~~l~~i~~~a~~~ 81 (447)
T TIGR03183 14 IPWVVGYSGGKDSTAVLQLIWNALAALPAEQRTKKIHVISTDTLVE-------NP-----IVAAWVNASLERMQEAAQDQ 81 (447)
T ss_pred CceEEEeCCCHHHHHHHHHHHHHHHhccccccCcceEEEECcCCCc-------cH-----HHHHHHHHHHHHHHHHHHHc
Confidence 44789999999999998877765532 122244567765443211 11 11233455566666677776
Q ss_pred CCceEEEEE
Q 044284 97 HIQCELVVL 105 (421)
Q Consensus 97 gV~~e~vvl 105 (421)
|+++..+++
T Consensus 82 ~lpi~~~~v 90 (447)
T TIGR03183 82 GLPIEPHRL 90 (447)
T ss_pred CCCeEEEec
Confidence 777665554
No 178
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=34.13 E-value=88 Score=26.21 Aligned_cols=40 Identities=8% Similarity=0.019 Sum_probs=30.7
Q ss_pred HHhhhcCCceEEEEEEcCCHHHHHHHHHHHcCCCEEEEcCCC
Q 044284 91 CYCTRRHIQCELVVLERQDVARALIEYVSQYGVETMLLGAPT 132 (421)
Q Consensus 91 ~~c~~~gV~~e~vvleg~dva~aIve~A~~~~idlIVmGs~g 132 (421)
.++...|.++ +.+...-+.+.+++.+.+.++|.|++....
T Consensus 21 ~~l~~~G~~V--~~lg~~~~~~~l~~~~~~~~pdvV~iS~~~ 60 (119)
T cd02067 21 RALRDAGFEV--IDLGVDVPPEEIVEAAKEEDADAIGLSGLL 60 (119)
T ss_pred HHHHHCCCEE--EECCCCCCHHHHHHHHHHcCCCEEEEeccc
Confidence 3555677765 445555678899999999999999998773
No 179
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=33.56 E-value=3.5e+02 Score=25.75 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 044284 295 MELKQTMDMYNAACKEALAAKQK 317 (421)
Q Consensus 295 lELk~tm~my~~AckEa~~Akqk 317 (421)
..|.....-|..+|++.=.++.+
T Consensus 121 ~~l~KaK~~Y~~~c~~~e~~~~~ 143 (236)
T cd07651 121 KYLEKAREKYEADCSKINSYTLQ 143 (236)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHH
Confidence 44555566777777775555544
No 180
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=33.36 E-value=6.1e+02 Score=26.91 Aligned_cols=8 Identities=25% Similarity=0.160 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 044284 307 ACKEALAA 314 (421)
Q Consensus 307 AckEa~~A 314 (421)
+.+|+-.+
T Consensus 47 a~~ea~~~ 54 (445)
T PRK13428 47 AADRLAEA 54 (445)
T ss_pred HHHHHHHH
Confidence 33333333
No 181
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=33.25 E-value=4.4e+02 Score=25.65 Aligned_cols=38 Identities=21% Similarity=0.448 Sum_probs=29.0
Q ss_pred hhcHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044284 283 MEDVEDDVKRLK-------MELKQTMDMYNAACKEALAAKQKAVE 320 (421)
Q Consensus 283 ~~~~eaEm~rLr-------lELk~tm~my~~AckEa~~Akqk~~e 320 (421)
..+++.+|.++. .+|.....-|..+|+|+=.|.++.+.
T Consensus 114 ~K~~e~~~~kaqk~~~~~~~~l~kaKk~Y~~~cke~e~a~~~~~~ 158 (258)
T cd07655 114 TKEAEDGFAKAQKPWAKLLKKVEKAKKAYHAACKAEKSAQKQENN 158 (258)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356777777755 45777888999999999888877653
No 182
>PLN03188 kinesin-12 family protein; Provisional
Probab=33.08 E-value=5.7e+02 Score=31.05 Aligned_cols=86 Identities=23% Similarity=0.206 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHhhhhhhhhhchhhhHHHHHHHHHHHHHHHHHHHHHH--------HHH
Q 044284 296 ELKQTMDMYNAACKEALAAKQKAVELEKWKMKEEKRLKETQMGEERGKAKIKAAIEAAEAAQKIAKLEV--------QKR 367 (421)
Q Consensus 296 ELk~tm~my~~AckEa~~Akqk~~eL~~~~~EE~~k~eea~~~eE~EKak~~aA~eaaE~ak~~ae~Ea--------qkR 367 (421)
+|+.-++.=+..-.|.-+|=|.|++-+.+=+|.=.-|||-.. .==+||+.-+|...-+|+-|.+-. -+-
T Consensus 1083 kl~~EL~~eK~c~eel~~a~q~am~ghar~~e~ya~l~ek~~---~ll~~hr~i~egi~dvkkaaakag~kg~~~~f~~a 1159 (1320)
T PLN03188 1083 KQKHELDTEKRCAEELKEAMQMAMEGHARMLEQYADLEEKHI---QLLARHRRIQEGIDDVKKAAARAGVRGAESKFINA 1159 (1320)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 344455555555666666666666665555544333333211 223667777776666666666533 334
Q ss_pred HHHHHhhhHHHHHHHHH
Q 044284 368 VNAEAKALKEAEEKRKL 384 (421)
Q Consensus 368 ~~aE~kA~~e~~ek~k~ 384 (421)
.-||+-|+|...||.|-
T Consensus 1160 laae~s~l~~ereker~ 1176 (1320)
T PLN03188 1160 LAAEISALKVEREKERR 1176 (1320)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56788888877777653
No 183
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=33.00 E-value=6.7e+02 Score=27.22 Aligned_cols=14 Identities=7% Similarity=0.477 Sum_probs=10.9
Q ss_pred HcCCCEEEEcCCCC
Q 044284 120 QYGVETMLLGAPTK 133 (421)
Q Consensus 120 ~~~idlIVmGs~gr 133 (421)
..++|.|++|...+
T Consensus 64 ~~~ADi~~ig~~a~ 77 (489)
T PF05262_consen 64 KLDADIFIIGENAR 77 (489)
T ss_pred CCCCcEEEEcCCCC
Confidence 45799999998753
No 184
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=32.81 E-value=8.6e+02 Score=29.30 Aligned_cols=32 Identities=25% Similarity=0.268 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044284 286 VEDDVKRLKMELKQTMDMYNAACKEALAAKQK 317 (421)
Q Consensus 286 ~eaEm~rLrlELk~tm~my~~AckEa~~Akqk 317 (421)
.+.+.+.+-..|++....|+.+.++.-.+.+.
T Consensus 619 ~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~ 650 (1201)
T PF12128_consen 619 AEERQEELEKQLKQINKKIEELKREITQAEQE 650 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445556666666666666666555544
No 185
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=32.68 E-value=6.7e+02 Score=29.09 Aligned_cols=35 Identities=34% Similarity=0.334 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHhHHhHHHhhhhhhhhhchh
Q 044284 306 AACKEALAAKQKAVELEKWKMKEEKRLKETQMGEE 340 (421)
Q Consensus 306 ~AckEa~~Akqk~~eL~~~~~EE~~k~eea~~~eE 340 (421)
.+.+|+=.|++++.+..+-+..|++|+.+.....|
T Consensus 584 ~~~re~Eea~~q~~e~~~~r~aE~kRl~ee~~Ere 618 (988)
T KOG2072|consen 584 NVEREAEEAQEQAKEQRQAREAEEKRLIEEKKERE 618 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888889999999999999999888777666
No 186
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=32.67 E-value=2e+02 Score=31.14 Aligned_cols=108 Identities=16% Similarity=0.197 Sum_probs=61.3
Q ss_pred EEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 044284 20 IVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRHIQ 99 (421)
Q Consensus 20 ~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~gV~ 99 (421)
.|+|-.+.|..=...|.+ ++..+..+.+|-|-..+.+ +++.+|..+. ..||+
T Consensus 361 dviltyg~s~vV~~ill~----A~~~~k~frVvVVDSRP~~--------------------EG~~~lr~Lv----~~Gin 412 (556)
T KOG1467|consen 361 DVLLTYGSSSVVNMILLE----AKELGKKFRVVVVDSRPNL--------------------EGRKLLRRLV----DRGIN 412 (556)
T ss_pred CEEEEecchHHHHHHHHH----HHHhCcceEEEEEeCCCCc--------------------chHHHHHHHH----HcCCC
Confidence 456666666544444444 3344555555555443322 4555666554 57999
Q ss_pred eEEEEEEcCCHHHHHHHHHHHcCCCEEEEcCCCC--CCCcccccccccccccccchhcccCCCcceEEEEeCC
Q 044284 100 CELVVLERQDVARALIEYVSQYGVETMLLGAPTK--NGLSRSSFCRLFKASDTPGTVLKWAPDFCNVYIVSKG 170 (421)
Q Consensus 100 ~e~vvleg~dva~aIve~A~~~~idlIVmGs~gr--~~f~~~~~~r~~~~~sVa~~V~k~Ap~~C~V~VV~kg 170 (421)
|.-+++.+ +.|+- ..++.|.+|+|.. ||+. . -+ .|--...++.++. ..||+|.+..
T Consensus 413 ctYv~I~a-------~syim-~evtkvfLGahailsNG~v---y-sR--~GTa~valvAna~-nVPVlVCCE~ 470 (556)
T KOG1467|consen 413 CTYVLINA-------ASYIM-LEVTKVFLGAHAILSNGAV---Y-SR--VGTACVALVANAF-NVPVLVCCEA 470 (556)
T ss_pred eEEEEehh-------HHHHH-HhcceeeechhhhhcCcch---h-hh--cchHHHHHHhccc-CCCEEEEech
Confidence 99777643 23444 5689999999973 3321 0 11 1233344444453 3899999863
No 187
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=32.45 E-value=1.7e+02 Score=27.23 Aligned_cols=93 Identities=15% Similarity=0.103 Sum_probs=58.4
Q ss_pred CEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 044284 19 KIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRHI 98 (421)
Q Consensus 19 ~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~gV 98 (421)
-.++|+..|.-...-+.+-|...... +.+|.||..-..-. -+ ++..+.+++..||
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~-~~~v~lis~D~~R~---------------------ga---~eQL~~~a~~l~v 57 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLK-GKKVALISADTYRI---------------------GA---VEQLKTYAEILGV 57 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEESTSST---------------------HH---HHHHHHHHHHHTE
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhc-cccceeecCCCCCc---------------------cH---HHHHHHHHHHhcc
Confidence 35788899997778899999888777 88888887532110 01 1223344555576
Q ss_pred ceEEEEEEcCCHHHH---HHHHHHHcCCCEEEEcCCCCCCCc
Q 044284 99 QCELVVLERQDVARA---LIEYVSQYGVETMLLGAPTKNGLS 137 (421)
Q Consensus 99 ~~e~vvleg~dva~a---Ive~A~~~~idlIVmGs~gr~~f~ 137 (421)
++.... ...|+++. .++.....++|+|++=+.|++...
T Consensus 58 p~~~~~-~~~~~~~~~~~~l~~~~~~~~D~vlIDT~Gr~~~d 98 (196)
T PF00448_consen 58 PFYVAR-TESDPAEIAREALEKFRKKGYDLVLIDTAGRSPRD 98 (196)
T ss_dssp EEEESS-TTSCHHHHHHHHHHHHHHTTSSEEEEEE-SSSSTH
T ss_pred ccchhh-cchhhHHHHHHHHHHHhhcCCCEEEEecCCcchhh
Confidence 654321 12355554 456667788999999999998764
No 188
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=31.99 E-value=32 Score=35.23 Aligned_cols=50 Identities=12% Similarity=0.232 Sum_probs=35.0
Q ss_pred HHHHHHHHhhhcCCceEEEEEEcCCHHHHHHHHHHHcCCCEEEEcCCCCCCCcc
Q 044284 85 VFLPFRCYCTRRHIQCELVVLERQDVARALIEYVSQYGVETMLLGAPTKNGLSR 138 (421)
Q Consensus 85 lL~~~r~~c~~~gV~~e~vvleg~dva~aIve~A~~~~idlIVmGs~gr~~f~~ 138 (421)
+|.++-....++|.++.....+. +.+.+..+.++++.+++|.+|.+-..|
T Consensus 15 fFk~~I~eL~~~GheV~it~R~~----~~~~~LL~~yg~~y~~iG~~g~~~~~K 64 (335)
T PF04007_consen 15 FFKNIIRELEKRGHEVLITARDK----DETEELLDLYGIDYIVIGKHGDSLYGK 64 (335)
T ss_pred HHHHHHHHHHhCCCEEEEEEecc----chHHHHHHHcCCCeEEEcCCCCCHHHH
Confidence 56666666667787765443332 466777789999999999999555443
No 189
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=31.71 E-value=6.9e+02 Score=26.98 Aligned_cols=22 Identities=36% Similarity=0.436 Sum_probs=14.9
Q ss_pred HHHHhhhHHHHHHHHHHHHHhc
Q 044284 369 NAEAKALKEAEEKRKLLDALWQ 390 (421)
Q Consensus 369 ~aE~kA~~e~~ek~k~~~al~~ 390 (421)
+-+|--++..+|++|.+.++.-
T Consensus 241 nrr~l~~~~n~eRekwl~aInT 262 (630)
T KOG0742|consen 241 NRRQLRLKANEEREKWLEAINT 262 (630)
T ss_pred HHHHHHHHhhhHHHHHHHHHhh
Confidence 3345556677788888887754
No 190
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.67 E-value=2.9e+02 Score=27.31 Aligned_cols=6 Identities=67% Similarity=0.794 Sum_probs=2.7
Q ss_pred HHHHHH
Q 044284 294 KMELKQ 299 (421)
Q Consensus 294 rlELk~ 299 (421)
|||-||
T Consensus 110 Kleakq 115 (299)
T KOG3054|consen 110 KLEAKQ 115 (299)
T ss_pred HHHHHH
Confidence 344444
No 191
>PRK11637 AmiB activator; Provisional
Probab=31.50 E-value=6.2e+02 Score=26.41 Aligned_cols=25 Identities=8% Similarity=0.098 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 044284 286 VEDDVKRLKMELKQTMDMYNAACKE 310 (421)
Q Consensus 286 ~eaEm~rLrlELk~tm~my~~AckE 310 (421)
++.+++.|..+|..+..-++....+
T Consensus 73 ~~~~l~~l~~qi~~~~~~i~~~~~~ 97 (428)
T PRK11637 73 LLAQLKKQEEAISQASRKLRETQNT 97 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444333333
No 192
>PRK13980 NAD synthetase; Provisional
Probab=31.49 E-value=4.2e+02 Score=25.81 Aligned_cols=38 Identities=11% Similarity=0.025 Sum_probs=27.7
Q ss_pred CCEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecC
Q 044284 18 EKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQK 57 (421)
Q Consensus 18 ~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~ 57 (421)
..+|+|++.|...|--++..+.+.+ .+..++.+|+...
T Consensus 30 ~~~vvv~lSGGiDSsv~a~l~~~~~--~~~~v~av~~~~~ 67 (265)
T PRK13980 30 AKGVVLGLSGGIDSAVVAYLAVKAL--GKENVLALLMPSS 67 (265)
T ss_pred CCcEEEECCCCHHHHHHHHHHHHHh--CccceEEEEeeCC
Confidence 4789999999988877776666654 1246788887543
No 193
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=31.22 E-value=1.2e+02 Score=29.26 Aligned_cols=38 Identities=13% Similarity=0.302 Sum_probs=33.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044284 285 DVEDDVKRLKMELKQTMDMYNAACKEALAAKQKAVELE 322 (421)
Q Consensus 285 ~~eaEm~rLrlELk~tm~my~~AckEa~~Akqk~~eL~ 322 (421)
....|+||-+-+++|..++.+.||+|=-.|+.+.+.|-
T Consensus 23 ~A~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll 60 (214)
T PF07795_consen 23 EANEELRKREEQIAHLKDLLKKAYQERDEAREQLQKLL 60 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678999999999999999999999999999877665
No 194
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=31.19 E-value=5e+02 Score=29.41 Aligned_cols=48 Identities=31% Similarity=0.493 Sum_probs=33.2
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHH----hhhhhhhhh
Q 044284 284 EDVEDDVKRLKMELKQTMDMYNAACKEALAAKQKAVELEKWKMKE----EKRLKETQM 337 (421)
Q Consensus 284 ~~~eaEm~rLrlELk~tm~my~~AckEa~~Akqk~~eL~~~~~EE----~~k~eea~~ 337 (421)
.+-..+-..||-||.+.++.|..|--| |+.|+...+.|. |++|.|||-
T Consensus 552 qes~eea~~lR~EL~~QQ~~y~~alqe------kvsevEsrl~E~L~~~E~rLNeARR 603 (739)
T PF07111_consen 552 QESTEEAAELRRELTQQQEVYERALQE------KVSEVESRLREQLSEMEKRLNEARR 603 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445668999999999999988665 666665554433 667777664
No 195
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=30.99 E-value=50 Score=31.21 Aligned_cols=45 Identities=13% Similarity=0.269 Sum_probs=30.9
Q ss_pred HHHHHHHHHhhhcCCceEEEEEEcCCHHHHHHHHHHHcCCCEEEEcC
Q 044284 84 EVFLPFRCYCTRRHIQCELVVLERQDVARALIEYVSQYGVETMLLGA 130 (421)
Q Consensus 84 elL~~~r~~c~~~gV~~e~vvleg~dva~aIve~A~~~~idlIVmGs 130 (421)
+-+..++++..++|.+++. -++| .+-..-+..+.+.|+|.+|+|+
T Consensus 151 ~KI~~l~~~~~~~~~~~~I-~vDG-GI~~~~~~~~~~aGad~~V~Gs 195 (201)
T PF00834_consen 151 EKIRELRKLIPENGLDFEI-EVDG-GINEENIKQLVEAGADIFVAGS 195 (201)
T ss_dssp HHHHHHHHHHHHHTCGSEE-EEES-SESTTTHHHHHHHT--EEEESH
T ss_pred HHHHHHHHHHHhcCCceEE-EEEC-CCCHHHHHHHHHcCCCEEEECH
Confidence 3356667777777766653 3454 5777788888899999999996
No 196
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=30.78 E-value=6.3e+02 Score=27.36 Aligned_cols=100 Identities=22% Similarity=0.203 Sum_probs=0.0
Q ss_pred CCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHhhhhhhhhhchh---hhHHHHHHHHHHHHHH
Q 044284 280 SQNMEDVEDDVKRLKMELKQTMDMYNAACKEALAAKQKAVELEKWKMKEEKRLKETQMGEE---RGKAKIKAAIEAAEAA 356 (421)
Q Consensus 280 s~~~~~~eaEm~rLrlELk~tm~my~~AckEa~~Akqk~~eL~~~~~EE~~k~eea~~~eE---~EKak~~aA~eaaE~a 356 (421)
+.....++.|+.++|.||.-...--..+.....+...+++++...--+=.+..+.++..-. .|=...++++..+|.=
T Consensus 336 ~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~r 415 (522)
T PF05701_consen 336 SSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEER 415 (522)
T ss_pred HhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHH
Q 044284 357 QKIAKLEVQKRVNAEAKALKEAE 379 (421)
Q Consensus 357 k~~ae~EaqkR~~aE~kA~~e~~ 379 (421)
=..+..|...-+-+|-.|+-+..
T Consensus 416 L~aa~ke~eaaKasEa~Ala~ik 438 (522)
T PF05701_consen 416 LEAALKEAEAAKASEALALAEIK 438 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
No 197
>PHA02818 hypothetical protein; Provisional
Probab=30.72 E-value=55 Score=27.03 Aligned_cols=10 Identities=40% Similarity=0.520 Sum_probs=6.1
Q ss_pred HHHHHHHHHH
Q 044284 407 LILFYFYFTV 416 (421)
Q Consensus 407 ~~~~~~~~~~ 416 (421)
++.+||||+.
T Consensus 76 ~~~~y~~~~~ 85 (92)
T PHA02818 76 LSILYDAFTH 85 (92)
T ss_pred HHHHHHHHHH
Confidence 3556777764
No 198
>PF03746 LamB_YcsF: LamB/YcsF family; InterPro: IPR005501 This entry represents the uncharacterised protein family UPF0271, including LamB. The lam locus of Emericella nidulans (Aspergillus nidulans) consists of two divergently transcribed genes, lamA and lamB, involved in the utilization of lactams such as 2-pyrrolidinone. Both genes are under the control of the positive regulatory gene amdR and are subject to carbon and nitrogen metabolite repression []. The exact molecular function of the proteins in this family is unknown.; PDB: 1V6T_A 1XW8_A 2XU2_A 2DFA_A.
Probab=30.65 E-value=3.2e+02 Score=26.78 Aligned_cols=57 Identities=12% Similarity=0.166 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCceEEEEEE---------cCCHHHHHHHHHHHcCCCEEEEcCCC
Q 044284 76 QQHDIHAMEVFLPFRCYCTRRHIQCELVVLE---------RQDVARALIEYVSQYGVETMLLGAPT 132 (421)
Q Consensus 76 ~~~~~~a~elL~~~r~~c~~~gV~~e~vvle---------g~dva~aIve~A~~~~idlIVmGs~g 132 (421)
+++.+....-+..+..+|...|++..-|--+ +.+++++|++.+...+.+++++|-.|
T Consensus 80 ~el~~~v~yQigaL~~~a~~~g~~l~hVKPHGALYn~~~~d~~lA~~i~~ai~~~~~~l~l~~~ag 145 (242)
T PF03746_consen 80 EELRDSVLYQIGALQAIAAAEGVPLHHVKPHGALYNMAAKDEELARAIAEAIKAFDPDLPLYGLAG 145 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT--EEEE---HHHHHHHHH-HHHHHHHHHHHHHH-TT-EEEEETT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeeEEecccHHHHHHHhcCHHHHHHHHHHHHHhCCCcEEEEcCC
Confidence 3344444445777888999999888766443 34679999999999999999999885
No 199
>TIGR02766 crypt_chrom_pln cryptochrome, plant family. At least five major families of cryptochomes and photolyases share FAD cofactor binding, sequence homology, and the ability to react to short wavelengths of visible light. Photolysases are responsible for light-dependent DNA repair by removal of two types of uv-induced DNA dimerizations. Cryptochromes have other functions, often regulatory and often largely unknown, which may include circadian clock entrainment and control of development. Members of this subfamily are known so far only in plants; they may show some photolyase activity in vitro but appear mostly to be regulatory proteins that respond to blue light.
Probab=30.54 E-value=2.1e+02 Score=30.33 Aligned_cols=83 Identities=13% Similarity=0.021 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhcCCceEEEEEEcCCHHH
Q 044284 33 HALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRHIQCELVVLERQDVAR 112 (421)
Q Consensus 33 ~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~gV~~e~vvleg~dva~ 112 (421)
.||..|++ .+ .|+.|+|.+|..... . . ... ....-..+-|..+.+-+...|+... ++.++++.+
T Consensus 14 ~aL~~A~~----~~-~vlpvyi~dp~~~~~----~-~-~~~---~~~~fl~~sL~~L~~~L~~~G~~L~--v~~~g~~~~ 77 (475)
T TIGR02766 14 PALAAAAR----AG-PVIPVFVWAPEEEGQ----Y-Y-PGR---VSRWWLKQSLAHLDQSLRSLGTCLV--TIRSTDTVA 77 (475)
T ss_pred HHHHHHHh----CC-CEEEEEEechHHhcc----c-c-ccH---HHHHHHHHHHHHHHHHHHHcCCceE--EEeCCCHHH
Confidence 46655553 23 688999987653210 0 0 000 0111233445556666666777654 344578999
Q ss_pred HHHHHHHHcCCCEEEEcCC
Q 044284 113 ALIEYVSQYGVETMLLGAP 131 (421)
Q Consensus 113 aIve~A~~~~idlIVmGs~ 131 (421)
.|.+.+++++|+.|+.-..
T Consensus 78 ~l~~l~~~~~i~~v~~~~~ 96 (475)
T TIGR02766 78 ALLDCVRSTGATRLFFNHL 96 (475)
T ss_pred HHHHHHHHcCCCEEEEecc
Confidence 9999999999999987665
No 200
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=30.49 E-value=2.8e+02 Score=28.96 Aligned_cols=38 Identities=18% Similarity=0.126 Sum_probs=28.6
Q ss_pred CCCCCEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEec
Q 044284 15 EGREKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQ 56 (421)
Q Consensus 15 ~~~~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~ 56 (421)
-|...+|+|++.|...|--|+-. +...|..|..||+..
T Consensus 177 vGs~gkvlvllSGGiDSpVAa~l----l~krG~~V~~v~f~~ 214 (381)
T PRK08384 177 IGTQGKVVALLSGGIDSPVAAFL----MMKRGVEVIPVHIYM 214 (381)
T ss_pred cCCCCcEEEEEeCChHHHHHHHH----HHHcCCeEEEEEEEe
Confidence 34568999999999888766433 333699999999964
No 201
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=30.25 E-value=3.8e+02 Score=26.92 Aligned_cols=28 Identities=21% Similarity=0.169 Sum_probs=15.0
Q ss_pred HHHhhhHHHHHHHHHH-HHHhcCccchhhH
Q 044284 370 AEAKALKEAEEKRKLL-DALWQSHMVLKYQ 398 (421)
Q Consensus 370 aE~kA~~e~~ek~k~~-~al~~~d~~~~~~ 398 (421)
+..+|.-|++ ..+++ +++..+...++++
T Consensus 259 ~~~~Aegea~-a~~~~~~a~~~~p~~~~~~ 287 (317)
T TIGR01932 259 RIIKGEGDAE-AAKIYSDAYGKDPEFYSFW 287 (317)
T ss_pred HHHHhhHHHH-HHHHHHHHHccCHHHHHHH
Confidence 4556666665 44443 6776654444433
No 202
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=30.23 E-value=5.5e+02 Score=25.41 Aligned_cols=24 Identities=4% Similarity=0.018 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHcCCCEEEEcCCCC
Q 044284 110 VARALIEYVSQYGVETMLLGAPTK 133 (421)
Q Consensus 110 va~aIve~A~~~~idlIVmGs~gr 133 (421)
....+++.+.+.++-+++||=.+-
T Consensus 182 ~~~~~~r~a~e~~i~l~~I~ld~~ 205 (266)
T cd01460 182 AQKVRLREAREQNVFVVFIIIDNP 205 (266)
T ss_pred HHHHHHHHHHHcCCeEEEEEEcCC
Confidence 445668888999999999987764
No 203
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=29.94 E-value=6.8e+02 Score=26.39 Aligned_cols=105 Identities=15% Similarity=0.075 Sum_probs=59.3
Q ss_pred CCEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHH-------------HHHH-HHHH
Q 044284 18 EKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQ-------------QQHD-IHAM 83 (421)
Q Consensus 18 ~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~-------------~~~~-~~a~ 83 (421)
.++|++|..|.=..--+++|-.+.. |..++.+.+--..+ .++..... -+.+ +-++
T Consensus 4 ~kkvvLAYSGGLDTSv~i~wL~e~~---~~eVia~tadvGQ~--------eed~~~i~eKA~~~Ga~~~~viD~reeF~~ 72 (403)
T COG0137 4 VKKVVLAYSGGLDTSVAIKWLKEKG---GAEVIAVTADVGQP--------EEDLDAIREKALELGAEEAYVIDAREEFVE 72 (403)
T ss_pred CcEEEEEecCCccHHHHHHHHHHhc---CceEEEEEEeCCCC--------hHHhHHHHHHHHHhCCceEEEeecHHHHHH
Confidence 3789999999855567899977765 46666555432211 01111111 1111 1122
Q ss_pred HHHHHHHHHhhhcCCceEEEEEEcC-----CHHHHHHHHHHHcCCCEEEEcCCCCCCCc
Q 044284 84 EVFLPFRCYCTRRHIQCELVVLERQ-----DVARALIEYVSQYGVETMLLGAPTKNGLS 137 (421)
Q Consensus 84 elL~~~r~~c~~~gV~~e~vvleg~-----dva~aIve~A~~~~idlIVmGs~gr~~f~ 137 (421)
+.+.+. +| .+-.++....-+. =+++.+++.|++.|++.|.=|+.|+|.=.
T Consensus 73 ~yi~~~--i~--ana~Yeg~YpL~TalaRPLIak~lVe~A~k~ga~avaHGcTGKGNDQ 127 (403)
T COG0137 73 DYIFPA--IK--ANALYEGVYPLGTALARPLIAKKLVEAAKKEGADAVAHGCTGKGNDQ 127 (403)
T ss_pred HHHHHH--HH--hhceeeccccccchhhHHHHHHHHHHHHHHcCCCEEEecCCCCCCce
Confidence 222222 11 2223443222222 25889999999999999999999998754
No 204
>TIGR02452 conserved hypothetical protein TIGR02452. Members of this uncharacterized protein family are found in Streptomyces, Nostoc sp. PCC 7120, Clostridium acetobutylicum, Lactobacillus johnsonii NCC 533, Deinococcus radiodurans, and Pirellula sp. for a broad but sparse phylogenetic distibution that at least suggests lateral gene transfer.
Probab=29.49 E-value=56 Score=32.42 Aligned_cols=26 Identities=12% Similarity=0.221 Sum_probs=23.6
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCc
Q 044284 112 RALIEYVSQYGVETMLLGAPTKNGLS 137 (421)
Q Consensus 112 ~aIve~A~~~~idlIVmGs~gr~~f~ 137 (421)
..|++.|..++.+.||||+-|-|.|.
T Consensus 195 ~~vL~ia~~~g~~~LVLGA~GCG~f~ 220 (266)
T TIGR02452 195 YKVLNIAEDQNIDALVLGAWGCGVFG 220 (266)
T ss_pred HHHHHHHHHcCCCEEEECCccccccC
Confidence 45889999999999999999999886
No 205
>PF14182 YgaB: YgaB-like protein
Probab=29.38 E-value=1.3e+02 Score=24.43 Aligned_cols=32 Identities=16% Similarity=0.506 Sum_probs=25.9
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044284 283 MEDVEDDVKRLKMELKQTMDMYNAACKEALAA 314 (421)
Q Consensus 283 ~~~~eaEm~rLrlELk~tm~my~~AckEa~~A 314 (421)
...+..|+++.|.+|+....++..--.|.|..
T Consensus 42 l~~i~~EI~~mkk~Lk~Iq~~Fe~QTeeVI~s 73 (79)
T PF14182_consen 42 LHSIQEEISQMKKELKEIQRVFEKQTEEVIRS 73 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999999998777776654
No 206
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.18 E-value=6.4e+02 Score=27.74 Aligned_cols=27 Identities=33% Similarity=0.364 Sum_probs=14.0
Q ss_pred hhhhhhhhhchhhhHHHHHHHHHHHHH
Q 044284 329 EKRLKETQMGEERGKAKIKAAIEAAEA 355 (421)
Q Consensus 329 ~~k~eea~~~eE~EKak~~aA~eaaE~ 355 (421)
+...++++..++.+.++..+..+++++
T Consensus 370 ~~~~~~a~e~~~~~~aeq~~~~~~aea 396 (548)
T COG2268 370 EAAVETARETEEAERAEQAALVAAAEA 396 (548)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555555
No 207
>PRK10674 deoxyribodipyrimidine photolyase; Provisional
Probab=28.97 E-value=2.9e+02 Score=29.42 Aligned_cols=85 Identities=9% Similarity=0.060 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhcCCceEEEEEEc---CC
Q 044284 33 HALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRHIQCELVVLER---QD 109 (421)
Q Consensus 33 ~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~gV~~e~vvleg---~d 109 (421)
.||..|++.. +..|+.|+|.++..... +..+ .....-..+-|..+.+-+...|+.. +++.| ++
T Consensus 18 ~aL~~A~~~~---~~~vlpvyv~dp~~~~~-~~~~--------~~r~~Fl~esL~~L~~~L~~~g~~L--~v~~g~~~g~ 83 (472)
T PRK10674 18 LALAAACRDP---SARVLALFIATPAQWAA-HDMA--------PRQAAFINAQLNALQIALAEKGIPL--LFHEVDDFAA 83 (472)
T ss_pred HHHHHHHhCC---CCCEEEEEEECchhhcc-CCCC--------HHHHHHHHHHHHHHHHHHHHcCCce--EEEecCCcCC
Confidence 4665565432 24699999998743210 0000 0011123344555555666677766 45554 47
Q ss_pred HHHHHHHHHHHcCCCEEEEcCC
Q 044284 110 VARALIEYVSQYGVETMLLGAP 131 (421)
Q Consensus 110 va~aIve~A~~~~idlIVmGs~ 131 (421)
+.+.|.+.+++.+|+.|+.-..
T Consensus 84 ~~~vl~~l~~~~~i~~v~~~~~ 105 (472)
T PRK10674 84 SVEWLKQFCQQHQVTHLFYNYQ 105 (472)
T ss_pred HHHHHHHHHHHcCCCEEEEecc
Confidence 8999999999999999998654
No 208
>PLN03188 kinesin-12 family protein; Provisional
Probab=28.96 E-value=3.2e+02 Score=33.04 Aligned_cols=55 Identities=31% Similarity=0.286 Sum_probs=32.3
Q ss_pred HHHHHHHHhHHhHHHhhhhhhhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhHH
Q 044284 314 AKQKAVELEKWKMKEEKRLKETQMGEERGKAKIKAAIEAAEAAQKIAKLEVQKRVN-AEAKALKE 377 (421)
Q Consensus 314 Akqk~~eL~~~~~EE~~k~eea~~~eE~EKak~~aA~eaaE~ak~~ae~EaqkR~~-aE~kA~~e 377 (421)
|-|-|.||-. ||.||..+.-..+.+...|.+++|.+++ ++|-.||+. .||-++++
T Consensus 1195 av~aagellv-------rl~eaeea~~~a~~r~~~~eqe~~~~~k--~~~klkrkh~~e~~t~~q 1250 (1320)
T PLN03188 1195 AVQAAGELLV-------RLKEAEEALTVAQKRAMDAEQEAAEAYK--QIDKLKRKHENEISTLNQ 1250 (1320)
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 3344666633 3333333333556666777777777776 245556655 88888776
No 209
>TIGR00930 2a30 K-Cl cotransporter.
Probab=28.48 E-value=6.1e+02 Score=29.82 Aligned_cols=96 Identities=13% Similarity=0.128 Sum_probs=60.2
Q ss_pred CEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 044284 19 KIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRHI 98 (421)
Q Consensus 19 ~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~gV 98 (421)
..|||.++........++.|-.+. ....-+++.||.+.... . .+ .+.+........+.+.+++
T Consensus 576 PqiLvl~~~p~~~~~Ll~f~~~l~-~~~gl~i~~~v~~~~~~--------~---~~-----~~~~~~~~~~~~~~~~~~~ 638 (953)
T TIGR00930 576 PQCLVLTGPPVCRPALLDFASQFT-KGKGLMICGSVIQGPRL--------E---CV-----KEAQAAEAKIQTWLEKNKV 638 (953)
T ss_pred CeEEEEeCCCcCcHHHHHHHHHhc-cCCcEEEEEEEecCchh--------h---hH-----HHHHHHHHHHHHHHHHhCC
Confidence 478898876666666777766655 33456788899865311 0 01 1112222233334456677
Q ss_pred ceEEEEEEcCCHHHHHHHHHHHcCC-----CEEEEcCC
Q 044284 99 QCELVVLERQDVARALIEYVSQYGV-----ETMLLGAP 131 (421)
Q Consensus 99 ~~e~vvleg~dva~aIve~A~~~~i-----dlIVmGs~ 131 (421)
+.-..++...|+.+++-..++..|. ..||||=.
T Consensus 639 ~~f~~~~~~~~~~~g~~~l~q~~GlG~l~PNtv~lg~~ 676 (953)
T TIGR00930 639 KAFYAVVVADDLREGVRHLIQASGLGRMKPNTLVMGYK 676 (953)
T ss_pred CeEEEEecCCCHHHHHHHHHHhcCCCCCCCCEEEecCc
Confidence 7766677788899999888887764 46777754
No 210
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=28.27 E-value=1.5e+02 Score=31.53 Aligned_cols=58 Identities=3% Similarity=-0.115 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCceEEEEEEc-CCHHHHHHHHHHHcCCCEEEEcCC
Q 044284 72 LIEQQQHDIHAMEVFLPFRCYCTRRHIQCELVVLER-QDVARALIEYVSQYGVETMLLGAP 131 (421)
Q Consensus 72 ~~~~~~~~~~a~elL~~~r~~c~~~gV~~e~vvleg-~dva~aIve~A~~~~idlIVmGs~ 131 (421)
...++..-+...++++.|.+-+++.|..+. ...+ .+..+.|.+.+.++++..||.|.+
T Consensus 39 ~~ik~~~~~~ld~~l~~~~~~~~~~g~~v~--~a~t~~eA~~~v~~i~~~~~~~~vv~~kS 97 (432)
T TIGR00273 39 KEIKLKVLENLDFYLDQLKENVTQRGGHVY--YAKTAEEARKIIGKVAQEKNGKKVVKSKS 97 (432)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHCCCEEE--EECCHHHHHHHHHHHHHHhCCCEEEEcCc
Confidence 445555556778899999888888876553 4443 466677889999999999999854
No 211
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=28.18 E-value=4.7e+02 Score=23.91 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=18.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHH
Q 044284 285 DVEDDVKRLKMELKQTMDMYNA 306 (421)
Q Consensus 285 ~~eaEm~rLrlELk~tm~my~~ 306 (421)
.-+.|+++||.+-.|....|..
T Consensus 47 ~~~~e~~~L~~d~e~L~~q~~~ 68 (158)
T PF09744_consen 47 EHEVELELLREDNEQLETQYER 68 (158)
T ss_pred hhhhHHHHHHHHHHHHHHHHHH
Confidence 6677899999999998888854
No 212
>PLN02828 formyltetrahydrofolate deformylase
Probab=27.89 E-value=3e+02 Score=27.32 Aligned_cols=86 Identities=14% Similarity=0.109 Sum_probs=53.1
Q ss_pred CCCEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 044284 17 REKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRR 96 (421)
Q Consensus 17 ~~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~ 96 (421)
...+|+|-+.|+.++..+|-++.+.-.. +.+|.+|-..++... . .+....+.+.
T Consensus 69 ~~~riavlvSg~g~nl~~ll~~~~~g~l-~~eI~~ViSn~~~~~------~-------------------a~~~~~A~~~ 122 (268)
T PLN02828 69 PKYKIAVLASKQDHCLIDLLHRWQDGRL-PVDITCVISNHERGP------N-------------------THVMRFLERH 122 (268)
T ss_pred CCcEEEEEEcCCChhHHHHHHhhhcCCC-CceEEEEEeCCCCCC------C-------------------chHHHHHHHc
Confidence 4579999999999999999888765422 455555444332110 0 0333445677
Q ss_pred CCceEEEEEEc-CCHHHHHHHHHHHcCCCEEEEcC
Q 044284 97 HIQCELVVLER-QDVARALIEYVSQYGVETMLLGA 130 (421)
Q Consensus 97 gV~~e~vvleg-~dva~aIve~A~~~~idlIVmGs 130 (421)
||++..+-... ..-.+.+++... ++|+||+..
T Consensus 123 gIP~~~~~~~~~~~~e~~~~~~l~--~~DliVLAg 155 (268)
T PLN02828 123 GIPYHYLPTTKENKREDEILELVK--GTDFLVLAR 155 (268)
T ss_pred CCCEEEeCCCCCCCHHHHHHHHHh--cCCEEEEee
Confidence 99886432221 222346777666 599999974
No 213
>PRK13054 lipid kinase; Reviewed
Probab=27.85 E-value=1.7e+02 Score=28.87 Aligned_cols=68 Identities=13% Similarity=0.099 Sum_probs=37.9
Q ss_pred HHhhhcCCceEEEEEEcCCHHHHHHHHHHHcCCCEEEEcCCCCCCCcccccccccccccccchhcccC-CCcceEEEEeC
Q 044284 91 CYCTRRHIQCELVVLERQDVARALIEYVSQYGVETMLLGAPTKNGLSRSSFCRLFKASDTPGTVLKWA-PDFCNVYIVSK 169 (421)
Q Consensus 91 ~~c~~~gV~~e~vvleg~dva~aIve~A~~~~idlIVmGs~gr~~f~~~~~~r~~~~~sVa~~V~k~A-p~~C~V~VV~k 169 (421)
..+.+.|++++....+...-+..+++.+...++|.||++. |.|.+. . |...++... ..-|++-||+-
T Consensus 25 ~~l~~~g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vvv~G-GDGTl~-----e------vv~~l~~~~~~~~~~lgiiP~ 92 (300)
T PRK13054 25 GLLREEGHTLHVRVTWEKGDAARYVEEALALGVATVIAGG-GDGTIN-----E------VATALAQLEGDARPALGILPL 92 (300)
T ss_pred HHHHHcCCEEEEEEecCCCcHHHHHHHHHHcCCCEEEEEC-CccHHH-----H------HHHHHHhhccCCCCcEEEEeC
Confidence 3455677777654444322366777776667788766443 555654 2 333333221 11278888886
Q ss_pred C
Q 044284 170 G 170 (421)
Q Consensus 170 g 170 (421)
|
T Consensus 93 G 93 (300)
T PRK13054 93 G 93 (300)
T ss_pred C
Confidence 5
No 214
>TIGR01765 tspaseT_teng_N transposase, putative, N-terminal domain. This model represents the N-terminal region of a family of putative transposases found in the largest copy number in Thermoanaerobacter tengcongensis. The three homologs in Bacillus anthracis are each split into two ORFs and This model represents the upstream ORF.
Probab=27.84 E-value=75 Score=24.80 Aligned_cols=21 Identities=14% Similarity=0.158 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 044284 294 KMELKQTMDMYNAACKEALAA 314 (421)
Q Consensus 294 rlELk~tm~my~~AckEa~~A 314 (421)
+..|.+||..|+.||+-+..-
T Consensus 13 ~~~L~~tm~~f~~A~n~~~~~ 33 (73)
T TIGR01765 13 KEYLLDLIRAFSSAVNFVIKR 33 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 367999999999999997543
No 215
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=27.58 E-value=6.3e+02 Score=26.96 Aligned_cols=43 Identities=19% Similarity=0.251 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHHHHhcCcc---chhhHH---HHHHHHHHHHHHHHHHH
Q 044284 374 ALKEAEEKRKLLDALWQSHM---VLKYQS---LFHILVVLILFYFYFTV 416 (421)
Q Consensus 374 A~~e~~ek~k~~~al~~~d~---~~~~~~---~~~~~~~~~~~~~~~~~ 416 (421)
|..|+.-+.+-|..++.-.. ...|.. |+-++++++++|.-.++
T Consensus 377 AR~EA~RQ~~YL~~iv~P~lPd~a~~P~R~~~il~~~l~~l~l~~i~sL 425 (434)
T PRK15178 377 GKLQALRERQYLLIISQPMAESDTTRYADGTKWLLFFVLLGITYLVTSL 425 (434)
T ss_pred HHHHHHhhhhheeeeeCCCCCCcccCCchHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666666654321 133334 44444444444544444
No 216
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.34 E-value=59 Score=28.25 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=16.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHH
Q 044284 393 MVLKYQSLFHILVVLILFYFYFT 415 (421)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~ 415 (421)
..+.-+=++-++|++|++|.|+|
T Consensus 96 ~~l~~~m~~f~lV~~fi~~~~lt 118 (118)
T KOG3385|consen 96 ISLLCWMAVFSLVAFFILWVWLT 118 (118)
T ss_pred cchHHHHHHHHHHHHHHhheeeC
Confidence 33444445778899999998875
No 217
>PRK10867 signal recognition particle protein; Provisional
Probab=27.26 E-value=4.9e+02 Score=27.66 Aligned_cols=96 Identities=14% Similarity=0.087 Sum_probs=59.2
Q ss_pred CCCEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 044284 17 REKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRR 96 (421)
Q Consensus 17 ~~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~ 96 (421)
+.-.++|+.-|+-.+.-+.+.|..+....|..+.+|-.=+-- . .+. ..++.++...
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R-----------------~----aa~---eQL~~~a~~~ 155 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYR-----------------P----AAI---EQLKTLGEQI 155 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccc-----------------h----HHH---HHHHHHHhhc
Confidence 445678888999888888888887665447667766542211 0 011 1123344556
Q ss_pred CCceEEEEEEcCCHHH---HHHHHHHHcCCCEEEEcCCCCCCCc
Q 044284 97 HIQCELVVLERQDVAR---ALIEYVSQYGVETMLLGAPTKNGLS 137 (421)
Q Consensus 97 gV~~e~vvleg~dva~---aIve~A~~~~idlIVmGs~gr~~f~ 137 (421)
||++...- .+.||.+ ..++++...++|+|++=+.|+....
T Consensus 156 gv~v~~~~-~~~dp~~i~~~a~~~a~~~~~DvVIIDTaGrl~~d 198 (433)
T PRK10867 156 GVPVFPSG-DGQDPVDIAKAALEEAKENGYDVVIVDTAGRLHID 198 (433)
T ss_pred CCeEEecC-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcccC
Confidence 77654321 2335543 3446777788999999999987653
No 218
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=27.20 E-value=2.3e+02 Score=23.72 Aligned_cols=50 Identities=6% Similarity=0.068 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhhhcCCceEEEEEE-----------cCCHHHHHHHHHHHcCCCEEEEcCC
Q 044284 82 AMEVFLPFRCYCTRRHIQCELVVLE-----------RQDVARALIEYVSQYGVETMLLGAP 131 (421)
Q Consensus 82 a~elL~~~r~~c~~~gV~~e~vvle-----------g~dva~aIve~A~~~~idlIVmGs~ 131 (421)
.++-|..++.+|...|+.+...+.. |.--.+.|-+.+..+++|+||.-..
T Consensus 6 ~~~~l~El~~L~~t~g~~vv~~~~q~~~~~~p~~~iG~GK~eei~~~~~~~~~d~vvfd~~ 66 (95)
T PF13167_consen 6 FEESLEELEELAETAGYEVVGTVVQKRRKPDPKTYIGSGKVEEIKELIEELDADLVVFDNE 66 (95)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEEecCCCCCcceeechhHHHHHHHHHhhcCCCEEEECCC
Confidence 4556788888888888776644332 2234688999999999999999864
No 219
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=27.16 E-value=5.1e+02 Score=30.18 Aligned_cols=118 Identities=21% Similarity=0.227 Sum_probs=62.4
Q ss_pred ChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH------hHHHhhhhhhhhhchhhhHHHHHHHHHHHHH
Q 044284 282 NMEDVEDDVKRLKMELKQTMDMYNAACKEALAAKQKAVELEKW------KMKEEKRLKETQMGEERGKAKIKAAIEAAEA 355 (421)
Q Consensus 282 ~~~~~eaEm~rLrlELk~tm~my~~AckEa~~Akqk~~eL~~~------~~EE~~k~eea~~~eE~EKak~~aA~eaaE~ 355 (421)
...+++.|+.||+-||+-.-. .+.+-+=+-.||.+.|... +..+.++|-+.+.+++..++|-+.-+.-++.
T Consensus 517 e~~~le~E~~~l~~el~~~~~---~~~kl~eer~qklk~le~q~s~lkk~l~~~~~l~~~~~~~~~~~~kl~~ei~~~k~ 593 (913)
T KOG0244|consen 517 EKSPLESERSRLRNELNVFNR---LAAKLGEERVQKLKSLETQISLLKKKLSSQRKLIKPKPKSEGIRAKLLQEIHIAKG 593 (913)
T ss_pred HhcccccccHHHHHHHHhhhH---HHHHhhhHHHHHHHHHHHHHHHHHHhhHHHHHHhccchhhHHHHHHHHHHHHHHHH
Confidence 345688999999999988766 3333334456677666443 4455555666666665555555444443332
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHhcCccchhhHHHHHHHHHHH
Q 044284 356 AQKIAKLEVQKRVNAEAKALKEAEE-KRKLLDALWQSHMVLKYQSLFHILVVLI 408 (421)
Q Consensus 356 ak~~ae~EaqkR~~aE~kA~~e~~e-k~k~~~al~~~d~~~~~~~~~~~~~~~~ 408 (421)
+ ..+-+++...|-...+.... +.|.++.|-+.+..+.|. .+.+++|+
T Consensus 594 ~----kv~l~~~~~~d~ekfr~~K~~~~Ke~~qlk~~~rk~~~~--~~~~~~l~ 641 (913)
T KOG0244|consen 594 Q----KVQLLRVMKEDAEKFRQWKDRTEKEWNQLKGQERKSEGE--HPKLEVLV 641 (913)
T ss_pred H----HHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccchhhccc--hhHHHHHH
Confidence 2 22333344444333333222 245667777655443332 23444443
No 220
>PF13362 Toprim_3: Toprim domain
Probab=27.09 E-value=1.3e+02 Score=24.21 Aligned_cols=35 Identities=26% Similarity=0.299 Sum_probs=28.3
Q ss_pred CCCEEEEccCCCHH--HHHHHHHHHHHHhcCCCEEEE
Q 044284 17 REKIVAVAIDKDKF--SQHALKWAADNILSRHQTIKL 51 (421)
Q Consensus 17 ~~~~IlVAVDgS~~--S~~ALkwAid~a~~~ga~I~L 51 (421)
..++|+|+.|.+.. .+.+..-+.+.+...|-.+.+
T Consensus 40 ~~~~vii~~D~D~~~~G~~~a~~~~~~~~~~g~~~~~ 76 (96)
T PF13362_consen 40 PGRRVIIAADNDKANEGQKAAEKAAERLEAAGIAVSI 76 (96)
T ss_pred CCCeEEEEECCCCchhhHHHHHHHHHHHHhCCCeEEE
Confidence 57899999999988 888888888888776655443
No 221
>PHA02650 hypothetical protein; Provisional
Probab=26.74 E-value=74 Score=25.81 Aligned_cols=19 Identities=21% Similarity=0.649 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 044284 401 FHILVVLILFYFYFTVLRK 419 (421)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~ 419 (421)
+-+.++++|+|+|+.+.+.
T Consensus 57 ~~v~i~~l~~flYLK~~~r 75 (81)
T PHA02650 57 FSLIIVALFSFFVFKGYTR 75 (81)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 4455566778888888765
No 222
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog
Probab=26.66 E-value=5e+02 Score=25.62 Aligned_cols=34 Identities=29% Similarity=0.523 Sum_probs=25.9
Q ss_pred hcHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q 044284 284 EDVEDDVKRLKM-------ELKQTMDMYNAACKEALAAKQK 317 (421)
Q Consensus 284 ~~~eaEm~rLrl-------ELk~tm~my~~AckEa~~Akqk 317 (421)
.+++.+++|+.. ++-.+..-|..+|+|+=.|..+
T Consensus 115 K~~e~~~~KaQK~~~k~~k~v~~sKk~Ye~~Cke~~~A~~~ 155 (258)
T cd07680 115 KEAEDGFRKAQKPWAKKMKELEAAKKAYHLACKEEKLAMTR 155 (258)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457778887774 4556778999999998888755
No 223
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=26.43 E-value=5.6e+02 Score=26.68 Aligned_cols=35 Identities=23% Similarity=0.315 Sum_probs=23.7
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044284 284 EDVEDDVKRLKMELKQTMDMYNAACKEALAAKQKA 318 (421)
Q Consensus 284 ~~~eaEm~rLrlELk~tm~my~~AckEa~~Akqk~ 318 (421)
||+-+-+++=|-.|+|-.+....--+-+--||.|+
T Consensus 138 DDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl 172 (561)
T KOG1103|consen 138 DDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKL 172 (561)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777777777666666666666654
No 224
>KOG3180 consensus Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=26.27 E-value=2.5e+02 Score=26.99 Aligned_cols=81 Identities=21% Similarity=0.227 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHhcC-CCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhcCCceEEE---E
Q 044284 29 KFSQHALKWAADNILSR-HQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRHIQCELV---V 104 (421)
Q Consensus 29 ~~S~~ALkwAid~a~~~-ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~gV~~e~v---v 104 (421)
+.+.-|+..|+.+-... ..+++.+.+-+. +.+++|.....+-..+++.++.+ .
T Consensus 40 PF~eIAvEEAvrlKEk~l~eeviavs~G~a-----------------------qs~~ilRt~LA~Gadr~~hv~~~~~~~ 96 (254)
T KOG3180|consen 40 PFCEIAVEEAVRLKEKKLAEEVIAVSIGPA-----------------------QSQEILRTALAKGADRGVHVEVVGAEE 96 (254)
T ss_pred chHHHHHHHHHhHhhhhhhheEEEEecCcc-----------------------chHHHHHHHHhccCCceeEEecCchhh
Confidence 56667888887765322 223444433221 34556666665555666666643 3
Q ss_pred EEcCCHHHHHHHHHHHcCCCEEEEcCCC
Q 044284 105 LERQDVARALIEYVSQYGVETMLLGAPT 132 (421)
Q Consensus 105 leg~dva~aIve~A~~~~idlIVmGs~g 132 (421)
++.-.+++.+-..+.+.+.|++.||...
T Consensus 97 lepl~vAKiLk~~vekek~~lVllGKQA 124 (254)
T KOG3180|consen 97 LEPLHVAKILKKLVEKEKSDLVLLGKQA 124 (254)
T ss_pred ccchHHHHHHHHHHHhhcCCEEEEcccc
Confidence 4455789999999999999999999754
No 225
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=26.21 E-value=2.7e+02 Score=27.95 Aligned_cols=35 Identities=34% Similarity=0.453 Sum_probs=17.9
Q ss_pred HHHHhHHhHHHhhhhhhhhhchhhhHHHHHHHHHH
Q 044284 318 AVELEKWKMKEEKRLKETQMGEERGKAKIKAAIEA 352 (421)
Q Consensus 318 ~~eL~~~~~EE~~k~eea~~~eE~EKak~~aA~ea 352 (421)
+++..+|.-|+-.+++.+....-++++|.++++++
T Consensus 242 ~k~~rkWereagar~~a~aa~k~kae~k~kae~ea 276 (379)
T COG5269 242 MKKIRKWEREAGARLKALAALKGKAEAKNKAEIEA 276 (379)
T ss_pred HHHHhccchhhhhhHHHHHHHhhhhHHHhHHHHHH
Confidence 45566666555544433222222566666666654
No 226
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=26.05 E-value=7.9e+02 Score=25.84 Aligned_cols=6 Identities=33% Similarity=0.612 Sum_probs=3.0
Q ss_pred HHHHHh
Q 044284 384 LLDALW 389 (421)
Q Consensus 384 ~~~al~ 389 (421)
.||-|+
T Consensus 258 ~~dd~~ 263 (387)
T PRK09510 258 EVDDLF 263 (387)
T ss_pred HHHHHh
Confidence 355544
No 227
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=25.95 E-value=5.6e+02 Score=27.33 Aligned_cols=20 Identities=5% Similarity=0.131 Sum_probs=13.3
Q ss_pred CChhcHHHHHHHHHHHHHHH
Q 044284 281 QNMEDVEDDVKRLKMELKQT 300 (421)
Q Consensus 281 ~~~~~~eaEm~rLrlELk~t 300 (421)
...-+..+|.++.+.|=+++
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~ 300 (429)
T PRK00247 281 DEFKEHHAEQRAQYREKQKE 300 (429)
T ss_pred cchHHHHHHHHHHHHHHHHH
Confidence 34456677788877776665
No 228
>COG1540 Uncharacterized proteins, homologs of lactam utilization protein B [General function prediction only]
Probab=25.85 E-value=2.2e+02 Score=27.98 Aligned_cols=48 Identities=15% Similarity=0.207 Sum_probs=38.5
Q ss_pred HHHHHHHhhhcCCceEEEEEE---------cCCHHHHHHHHHHHcCCCEEEEcCCCC
Q 044284 86 FLPFRCYCTRRHIQCELVVLE---------RQDVARALIEYVSQYGVETMLLGAPTK 133 (421)
Q Consensus 86 L~~~r~~c~~~gV~~e~vvle---------g~dva~aIve~A~~~~idlIVmGs~gr 133 (421)
+-.+..+|+..|..+.-|--+ +...+++|++.+...+..+++||-.|.
T Consensus 92 iGAL~a~~~a~G~~~~hVKpHGALYN~~a~D~~la~av~~av~~~dp~L~l~~Lags 148 (252)
T COG1540 92 IGALQAFARAQGGVVQHVKPHGALYNQAAKDRALADAVAEAVAAFDPSLILMGLAGS 148 (252)
T ss_pred HHHHHHHHHhcCCeEEEecccHHHHHHhhcCHHHHHHHHHHHHHhCCCceEEecCcH
Confidence 566788999888877655332 335689999999999999999999974
No 229
>TIGR00646 MG010 DNA primase-related protein. The DNA primase DnaG of E. coli and its apparent orthologs in other eubacterial species are approximately 600 residues in length. Within this set, a conspicuous outlier in percent identity, as seen in a UPGMA difference tree, is the branch containing the Mycoplasmas. This lineage is also unique in containing the small, DNA primase-related protein modelled by this alignment, which is homologous to the central third of DNA primase. Several small regions of sequence similarity specifically to Mycoplasma sequences rather than to all DnaG homologs suggests that the divergence of this protein from DnaG post-dated the separation of bacterial lineages. The function of this DNA primase-related protein is unknown.
Probab=25.55 E-value=1.4e+02 Score=28.90 Aligned_cols=35 Identities=11% Similarity=0.083 Sum_probs=29.3
Q ss_pred CCEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEE
Q 044284 18 EKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLV 52 (421)
Q Consensus 18 ~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~Ll 52 (421)
..+|.+|.|+|+..+.|..-+++.+...|-.+.++
T Consensus 154 ~~~Iil~~D~D~AG~~Aa~r~~~~L~~~G~~v~vv 188 (218)
T TIGR00646 154 IEKIFICFDNDFAGKNAAANLEEILKKAGFITKVI 188 (218)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 36899999999999999999999998777655443
No 230
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=25.46 E-value=1.7e+02 Score=29.47 Aligned_cols=39 Identities=5% Similarity=0.175 Sum_probs=33.6
Q ss_pred hhhcCCceEEEEEEcCCHHHHHHHHHHHcCCCEEEEcCC
Q 044284 93 CTRRHIQCELVVLERQDVARALIEYVSQYGVETMLLGAP 131 (421)
Q Consensus 93 c~~~gV~~e~vvleg~dva~aIve~A~~~~idlIVmGs~ 131 (421)
-++.||++..+.+...+-++.|.++..++..|.||+-.|
T Consensus 125 Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~~PDIlViTGH 163 (287)
T PF05582_consen 125 YKQLGIPAVGIHVPEKEQPEKIYRLLEEYRPDILVITGH 163 (287)
T ss_pred HHHcCCceEEEEechHHhhHHHHHHHHHcCCCEEEEeCc
Confidence 346699999888877788999999999999999999655
No 231
>cd07679 F-BAR_PACSIN2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 2 (PACSIN2). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 2 or Syndapin II is expressed ubiquitously and is involved in the regulation of tubulin polymerization. It associates with Golgi membranes and forms a complex with dynamin II which is crucial in promoting vesicle formation from the trans-Golgi network. PACSIN 2 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave su
Probab=25.33 E-value=4.5e+02 Score=26.07 Aligned_cols=36 Identities=25% Similarity=0.507 Sum_probs=26.0
Q ss_pred hcHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 044284 284 EDVEDDVKRLK-------MELKQTMDMYNAACKEALAAKQKAV 319 (421)
Q Consensus 284 ~~~eaEm~rLr-------lELk~tm~my~~AckEa~~Akqk~~ 319 (421)
.++|.-++|.. .++-.+-..|..||++.-.|.....
T Consensus 115 k~~e~~f~KaQKpw~k~~kkv~~aKk~Y~~aCk~e~~A~~~~~ 157 (258)
T cd07679 115 KEAEDGFRKAQKPWAKKLKEVEAAKKAYHTACKEEKLATSREA 157 (258)
T ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 45666676665 4566677889999999999965543
No 232
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=25.32 E-value=9.4e+02 Score=27.60 Aligned_cols=19 Identities=21% Similarity=0.414 Sum_probs=9.4
Q ss_pred hhcHHHHHHHHHHHHHHHH
Q 044284 283 MEDVEDDVKRLKMELKQTM 301 (421)
Q Consensus 283 ~~~~eaEm~rLrlELk~tm 301 (421)
.+++-.++.+.|.+|.+-.
T Consensus 518 ~~~li~~l~~~~~~~e~~~ 536 (782)
T PRK00409 518 LNELIASLEELERELEQKA 536 (782)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555543
No 233
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=25.18 E-value=6e+02 Score=25.59 Aligned_cols=44 Identities=25% Similarity=0.321 Sum_probs=23.5
Q ss_pred HHhhhhhhhhhchh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044284 327 KEEKRLKETQMGEE--RGKAKIKAAIEAAEAAQKIAKLEVQKRVNA 370 (421)
Q Consensus 327 EE~~k~eea~~~eE--~EKak~~aA~eaaE~ak~~ae~EaqkR~~a 370 (421)
|+++...+++..|- --+++..+|...-+.+++-++.|+.....+
T Consensus 237 EqeK~~k~~rkWereagar~~a~aa~k~kae~k~kae~ea~a~asa 282 (379)
T COG5269 237 EQEKEMKKIRKWEREAGARLKALAALKGKAEAKNKAEIEAEALASA 282 (379)
T ss_pred HHHHHHHHHhccchhhhhhHHHHHHHhhhhHHHhHHHHHHHHhhhh
Confidence 44555566665544 333444555555555666666666554433
No 234
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=25.03 E-value=4.9e+02 Score=29.91 Aligned_cols=101 Identities=24% Similarity=0.357 Sum_probs=53.1
Q ss_pred CChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHhhhhhhhhhchhhhHHHHHHHHHHHHHHHHHH
Q 044284 281 QNMEDVEDDVKRLKMELKQTMDMYNAACKEALAAKQKAVELEKWKMKEEKRLKETQMGEERGKAKIKAAIEAAEAAQKIA 360 (421)
Q Consensus 281 ~~~~~~eaEm~rLrlELk~tm~my~~AckEa~~Akqk~~eL~~~~~EE~~k~eea~~~eE~EKak~~aA~eaaE~ak~~a 360 (421)
+...++.++|.+||.||.++.--.++.+-...+-.+. |+....|-.+-++|++.-. -.-..|||-+-.+ -||
T Consensus 664 ~qleeL~~~l~k~~~Eld~l~~qL~ssq~~L~e~d~~---L~~le~Errk~lEE~l~mK---qeal~aAisekda--~iA 735 (775)
T PF10174_consen 664 KQLEELEAALEKLRQELDQLKAQLESSQQSLMERDQE---LNALEAERRKQLEEVLEMK---QEALLAAISEKDA--NIA 735 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH---HHHHHHHHHHHHHHHHHHh---hcccccCCCchhh--HHH
Confidence 4568999999999999988875555555544444433 5555555555555544321 1122233333222 233
Q ss_pred HHH--HHHHHHHHHhhhHHHHHHHHHHHHHh
Q 044284 361 KLE--VQKRVNAEAKALKEAEEKRKLLDALW 389 (421)
Q Consensus 361 e~E--aqkR~~aE~kA~~e~~ek~k~~~al~ 389 (421)
-+| +.+++.+--...--..||+|++..|-
T Consensus 736 llE~~~~~~~~~q~e~~~l~rek~rl~~qlK 766 (775)
T PF10174_consen 736 LLELSSSKKKKTQEEVMALRREKDRLVQQLK 766 (775)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 344 33333332222222346777777765
No 235
>COG0415 PhrB Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair]
Probab=24.83 E-value=4.2e+02 Score=28.50 Aligned_cols=82 Identities=16% Similarity=0.161 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhcCCceEEEEEEcCCHHH
Q 044284 33 HALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRHIQCELVVLERQDVAR 112 (421)
Q Consensus 33 ~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~gV~~e~vvleg~dva~ 112 (421)
.||.+|++.. ...+++|.+.++.... ... .....-..+-|..+..-..+.|++. ++. .+|+..
T Consensus 18 ~aL~~A~~~~---~~~~~~vfi~~~~~~~-------~~~----~~~~~Fl~~sL~~L~~~L~~~gi~L--~v~-~~~~~~ 80 (461)
T COG0415 18 AALAAACQSG---QPVIIAVFILDPEQLG-------HAS----PRHAAFLLQSLQALQQSLAELGIPL--LVR-EGDPEQ 80 (461)
T ss_pred HHHHHHHhcC---CCceEEEEEechhhcc-------ccC----HHHHHHHHHHHHHHHHHHHHcCCce--EEE-eCCHHH
Confidence 4666666644 2334678888765421 000 0001122333455555556678765 344 457899
Q ss_pred HHHHHHHHcCCCEEEEcCC
Q 044284 113 ALIEYVSQYGVETMLLGAP 131 (421)
Q Consensus 113 aIve~A~~~~idlIVmGs~ 131 (421)
+|.+++++.+++.|+-.-.
T Consensus 81 ~l~~~~~~~~~~~v~~n~~ 99 (461)
T COG0415 81 VLPELAKQLAATTVFWNRD 99 (461)
T ss_pred HHHHHHHHhCcceEEeeee
Confidence 9999999999888877655
No 236
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=24.70 E-value=1.6e+02 Score=25.12 Aligned_cols=39 Identities=10% Similarity=0.104 Sum_probs=30.3
Q ss_pred HhhhcCCceEEEEEEcCCHHHHHHHHHHHcCCCEEEEcCCC
Q 044284 92 YCTRRHIQCELVVLERQDVARALIEYVSQYGVETMLLGAPT 132 (421)
Q Consensus 92 ~c~~~gV~~e~vvleg~dva~aIve~A~~~~idlIVmGs~g 132 (421)
++..+|+++ +.+-..-|.+.+++.+.+.++|.|+|.+..
T Consensus 22 ~l~~~G~~v--i~lG~~vp~e~~~~~a~~~~~d~V~iS~~~ 60 (122)
T cd02071 22 ALRDAGFEV--IYTGLRQTPEEIVEAAIQEDVDVIGLSSLS 60 (122)
T ss_pred HHHHCCCEE--EECCCCCCHHHHHHHHHHcCCCEEEEcccc
Confidence 455677654 455555778999999999999999998774
No 237
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=24.67 E-value=3.4e+02 Score=24.74 Aligned_cols=12 Identities=25% Similarity=0.473 Sum_probs=9.1
Q ss_pred hcHHHHHHHHHH
Q 044284 284 EDVEDDVKRLKM 295 (421)
Q Consensus 284 ~~~eaEm~rLrl 295 (421)
.+.+.||++|..
T Consensus 80 ~~a~~Em~KLi~ 91 (152)
T PF11500_consen 80 EKAEKEMEKLIK 91 (152)
T ss_pred HHHHHHHHHHHH
Confidence 667788888865
No 238
>cd01029 TOPRIM_primases TOPRIM_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of bacterial DnaG-type primases and their homologs. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. The prototypical bacterial primase. Escherichia coli DnaG is a single subunit enzyme.
Probab=24.56 E-value=1.9e+02 Score=22.17 Aligned_cols=33 Identities=21% Similarity=0.310 Sum_probs=26.2
Q ss_pred CCEEEEccCCCHHHHHHHHHHHHHHhcCCCEEE
Q 044284 18 EKIVAVAIDKDKFSQHALKWAADNILSRHQTIK 50 (421)
Q Consensus 18 ~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~ 50 (421)
.++|.++.|.|+..+.+.+.+.+.+...+..+.
T Consensus 43 ~~~vii~~D~D~~G~~~~~~~~~~~~~~~~~~~ 75 (79)
T cd01029 43 ARTVILAFDNDEAGKKAAARALELLLALGGRVR 75 (79)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 389999999999998888888888866554443
No 239
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=24.44 E-value=1.2e+02 Score=28.38 Aligned_cols=34 Identities=6% Similarity=0.149 Sum_probs=26.2
Q ss_pred CEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEE
Q 044284 19 KIVAVAIDKDKFSQHALKWAADNILSRHQTIKLV 52 (421)
Q Consensus 19 ~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~Ll 52 (421)
++|+|+|.||-.+.+++.-.++.+...|..|++|
T Consensus 1 ~~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI 34 (187)
T TIGR02852 1 KRIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPI 34 (187)
T ss_pred CEEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEE
Confidence 4799999999999999855677776668765433
No 240
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=24.37 E-value=5.7e+02 Score=27.11 Aligned_cols=97 Identities=12% Similarity=0.100 Sum_probs=61.1
Q ss_pred CCCCEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhh
Q 044284 16 GREKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTR 95 (421)
Q Consensus 16 ~~~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~ 95 (421)
.+.-.++|+.-|+-.+.-|.+.|..+....|..+.||-.=..- . .+ ...+..++..
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R-----------------~----~a---~~QL~~~a~~ 153 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYR-----------------P----AA---IEQLKVLGQQ 153 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccc-----------------h----HH---HHHHHHHHHh
Confidence 3556778899999888899999888654557777776443211 0 01 1122334455
Q ss_pred cCCceEEEEEEcCCHH---HHHHHHHHHcCCCEEEEcCCCCCCCc
Q 044284 96 RHIQCELVVLERQDVA---RALIEYVSQYGVETMLLGAPTKNGLS 137 (421)
Q Consensus 96 ~gV~~e~vvleg~dva---~aIve~A~~~~idlIVmGs~gr~~f~ 137 (421)
.|+++.... .+.+|. ...++++...++|+|++-+.|+....
T Consensus 154 ~gvp~~~~~-~~~~P~~i~~~al~~~~~~~~DvVIIDTaGr~~~d 197 (428)
T TIGR00959 154 VGVPVFALG-KGQSPVEIARRALEYAKENGFDVVIVDTAGRLQID 197 (428)
T ss_pred cCCceEecC-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccccC
Confidence 677655422 233554 34556777889999999999987653
No 241
>PLN02347 GMP synthetase
Probab=24.30 E-value=3.6e+02 Score=29.46 Aligned_cols=39 Identities=18% Similarity=0.069 Sum_probs=31.5
Q ss_pred CCCEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCC
Q 044284 17 REKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKS 58 (421)
Q Consensus 17 ~~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~ 58 (421)
...+|+||+.|...|--++.++.+.+ |..++.|||-.+.
T Consensus 228 ~~~~vvvalSGGVDSsvla~l~~~al---G~~v~av~id~g~ 266 (536)
T PLN02347 228 PDEHVICALSGGVDSTVAATLVHKAI---GDRLHCVFVDNGL 266 (536)
T ss_pred cCCeEEEEecCChhHHHHHHHHHHHh---CCcEEEEEEeCCC
Confidence 46789999999988888887776644 6789999998654
No 242
>PF13662 Toprim_4: Toprim domain; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A.
Probab=24.16 E-value=1e+02 Score=24.19 Aligned_cols=33 Identities=27% Similarity=0.287 Sum_probs=22.9
Q ss_pred CCEEEEccCCCHHHHHHHHHHHHHHhcCCCEEE
Q 044284 18 EKIVAVAIDKDKFSQHALKWAADNILSRHQTIK 50 (421)
Q Consensus 18 ~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~ 50 (421)
.+.|.++.|.|...+.+.....+.+...|-++.
T Consensus 46 ~~~Vii~~D~D~~G~~~a~~i~~~l~~~gi~v~ 78 (81)
T PF13662_consen 46 VKEVIIAFDNDKAGEKAAQKIAKKLLPLGIRVT 78 (81)
T ss_dssp -SEEEEEEESSHHHHHHHHHHHHHHG-------
T ss_pred CceEEEEeCcCHHHHHHHHHHHHHHHhhccccc
Confidence 488999999999999999998887765554443
No 243
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=24.15 E-value=2e+02 Score=28.87 Aligned_cols=38 Identities=0% Similarity=0.170 Sum_probs=33.0
Q ss_pred hhcCCceEEEEEEcCCHHHHHHHHHHHcCCCEEEEcCC
Q 044284 94 TRRHIQCELVVLERQDVARALIEYVSQYGVETMLLGAP 131 (421)
Q Consensus 94 ~~~gV~~e~vvleg~dva~aIve~A~~~~idlIVmGs~ 131 (421)
++.||++..+.+....-++.|.++..++..|.||+-.|
T Consensus 125 kql~i~a~G~~~~E~eqp~~i~~Ll~~~~PDIlViTGH 162 (283)
T TIGR02855 125 KKIGVPVVGIHCKEKEMPEKVLDLIEEVRPDILVITGH 162 (283)
T ss_pred HHhCCceEEEEecchhchHHHHHHHHHhCCCEEEEeCc
Confidence 45689999888877788999999999999999999655
No 244
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=24.12 E-value=4.8e+02 Score=22.66 Aligned_cols=27 Identities=22% Similarity=0.394 Sum_probs=18.3
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 044284 283 MEDVEDDVKRLKMELKQTMDMYNAACK 309 (421)
Q Consensus 283 ~~~~eaEm~rLrlELk~tm~my~~Ack 309 (421)
.++.+..+..+|-+|+.....+..|+.
T Consensus 19 ~~~~~~~~~~~~~dl~~q~~~a~~Aq~ 45 (132)
T PF07926_consen 19 EEDAEEQLQSLREDLESQAKIAQEAQQ 45 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777777776666666654
No 245
>PF15361 RIC3: Resistance to inhibitors of cholinesterase homologue 3
Probab=23.85 E-value=74 Score=28.86 Aligned_cols=18 Identities=28% Similarity=0.687 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 044284 401 FHILVVLILFYFYFTVLR 418 (421)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~ 418 (421)
.-|-||||++|..|.+.+
T Consensus 89 YtiGI~~f~lY~l~Ki~~ 106 (152)
T PF15361_consen 89 YTIGIVLFILYTLFKIKK 106 (152)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 445555555555555543
No 246
>PF10097 DUF2335: Predicted membrane protein (DUF2335); InterPro: IPR019284 This entry is represented by Xylella phage Xfas53, Orf42. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=23.79 E-value=2e+02 Score=21.10 Aligned_cols=30 Identities=37% Similarity=0.350 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 044284 352 AAEAAQKIAKLEVQKRVNAEAKALKEAEEK 381 (421)
Q Consensus 352 aaE~ak~~ae~EaqkR~~aE~kA~~e~~ek 381 (421)
+||--=.+||.|...|+..|.++++-...+
T Consensus 16 ~aerI~~mae~eq~hR~~~e~~~l~~~~~~ 45 (50)
T PF10097_consen 16 AAERIFAMAEKEQEHRHELEKKALKSEIRR 45 (50)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666788999999999998887654433
No 247
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=23.74 E-value=6e+02 Score=23.69 Aligned_cols=32 Identities=16% Similarity=0.220 Sum_probs=19.9
Q ss_pred EEccCCCHHHHHHHHHHHHHHhcCCCEEEEEE
Q 044284 22 AVAIDKDKFSQHALKWAADNILSRHQTIKLVH 53 (421)
Q Consensus 22 lVAVDgS~~S~~ALkwAid~a~~~ga~I~LlH 53 (421)
.|.+|.-+..+.+++|.++.....+..|.++.
T Consensus 99 ~v~~d~~~~g~~~~~~l~~~~g~~~~~i~~i~ 130 (282)
T cd06318 99 QVQSSNAKNGNLVGEWVVGELGDKPMKIILLS 130 (282)
T ss_pred EEecCcHHHHHHHHHHHHHHhCCCCceEEEEE
Confidence 46677667777888877775533333555544
No 248
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=23.57 E-value=1.7e+02 Score=29.63 Aligned_cols=44 Identities=9% Similarity=0.206 Sum_probs=27.9
Q ss_pred HHHHHHhhhcCCceEEEEEEcC---CHHHHHHHHHHHcCCCEEE-EcC
Q 044284 87 LPFRCYCTRRHIQCELVVLERQ---DVARALIEYVSQYGVETML-LGA 130 (421)
Q Consensus 87 ~~~r~~c~~~gV~~e~vvleg~---dva~aIve~A~~~~idlIV-mGs 130 (421)
..+...+.+.|+.+...+..++ +....+++.+.+.++|.|| +|.
T Consensus 39 ~~v~~~l~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGG 86 (349)
T cd08550 39 PRFEAALAKSIIVVDVIVFGGECSTEEVVKALCGAEEQEADVIIGVGG 86 (349)
T ss_pred HHHHHHHHhcCCeeEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEecC
Confidence 3444445556776654444433 3456778888999999887 664
No 249
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=23.52 E-value=5.2e+02 Score=24.75 Aligned_cols=90 Identities=20% Similarity=0.144 Sum_probs=44.5
Q ss_pred EEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCC-CCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 044284 20 IVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHS-NNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRHI 98 (421)
Q Consensus 20 ~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~gV 98 (421)
++++-..|.|.|-.|+-+|++. .....|++..+.... +++-+...+. . +.+++ .-||
T Consensus 2 k~v~l~SGGKDS~lAl~~a~~~----~~v~~L~t~~~~~~~s~~~H~~~~~~---~----~~qA~-----------algi 59 (218)
T PF01902_consen 2 KVVALWSGGKDSCLALYRALRQ----HEVVCLLTMVPEEEDSYMFHGVNIEL---I----EAQAE-----------ALGI 59 (218)
T ss_dssp EEEEE--SSHHHHHHHHHHHHT-----EEEEEEEEEESTTT-SSS-STTGTC---H----HHHHH-----------HHT-
T ss_pred cEEEEEcCcHHHHHHHHHHHHh----CCccEEEEeccCCCCcccccccCHHH---H----HHHHH-----------HCCC
Confidence 5677788999999999888876 234578888765432 1111111111 1 01111 2255
Q ss_pred ceEEEEEE--cCCHHHHHHHHHHHcCCCEEEEcCC
Q 044284 99 QCELVVLE--RQDVARALIEYVSQYGVETMLLGAP 131 (421)
Q Consensus 99 ~~e~vvle--g~dva~aIve~A~~~~idlIVmGs~ 131 (421)
+...+-+. ..+-.+.+.+..++.+|+.||-|.=
T Consensus 60 pl~~~~~~g~~~~~~~~l~~~l~~~~v~~vv~GdI 94 (218)
T PF01902_consen 60 PLIEIPTSGDEEDYVEDLKEALKELKVEAVVFGDI 94 (218)
T ss_dssp -EEEEEE---CCCHHHHHHHHHCTC--SEEE--TT
T ss_pred CEEEEEccCccchhhHHHHHHHHHcCCCEEEECcC
Confidence 55444443 2344456666677777888887765
No 250
>PF13155 Toprim_2: Toprim-like
Probab=23.08 E-value=1.7e+02 Score=23.31 Aligned_cols=30 Identities=17% Similarity=0.183 Sum_probs=26.0
Q ss_pred CCCEEEEccCCCHHHHHHHHHHHHHHhcCC
Q 044284 17 REKIVAVAIDKDKFSQHALKWAADNILSRH 46 (421)
Q Consensus 17 ~~~~IlVAVDgS~~S~~ALkwAid~a~~~g 46 (421)
++++|.+|.|-|+..+.+.+...+.+...+
T Consensus 46 ~~~~i~l~~DnD~aG~~~~~~~~~~l~~~~ 75 (96)
T PF13155_consen 46 PYKKIVLAFDNDEAGRKAAEKLQKELKEEG 75 (96)
T ss_pred CCCcEEEEeCCCHHHHHHHHHHHHHHHhhC
Confidence 347899999999999999999998887655
No 251
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=22.98 E-value=6.9e+02 Score=24.08 Aligned_cols=22 Identities=23% Similarity=0.478 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 044284 292 RLKMELKQTMDMYNAACKEALA 313 (421)
Q Consensus 292 rLrlELk~tm~my~~AckEa~~ 313 (421)
|.|-|.+-||..|.+.-.-+|.
T Consensus 153 rvRDEIrMt~aAYqtlyeSsvA 174 (259)
T KOG4001|consen 153 RVRDEIRMTFAAYQTLYESSVA 174 (259)
T ss_pred EehHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999877555443
No 252
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=22.80 E-value=2e+02 Score=29.05 Aligned_cols=11 Identities=36% Similarity=0.603 Sum_probs=4.6
Q ss_pred CCHHHHHHHHH
Q 044284 108 QDVARALIEYV 118 (421)
Q Consensus 108 ~dva~aIve~A 118 (421)
.|+-..|.+++
T Consensus 92 qdl~~~l~~~i 102 (321)
T PF07946_consen 92 QDLFSWLFEFI 102 (321)
T ss_pred cCHHHHHHHHH
Confidence 34444444443
No 253
>PHA02031 putative DnaG-like primase
Probab=22.80 E-value=1.2e+02 Score=30.07 Aligned_cols=36 Identities=11% Similarity=-0.018 Sum_probs=30.0
Q ss_pred CEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEE
Q 044284 19 KIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHV 54 (421)
Q Consensus 19 ~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV 54 (421)
.+|+++.|||...++|..-|++.+...+-.+.++.+
T Consensus 207 ~~Vil~fDgD~AG~~Aa~ra~~~l~~~~~~v~vv~l 242 (266)
T PHA02031 207 PRVLIFLDGDPAGVDGSAGAMRRLRPLLIEGQVIIT 242 (266)
T ss_pred CCEEEEeCCCHHHHHHHHHHHHHHHHcCCceEEEEC
Confidence 789999999999999999999999877755554444
No 254
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=22.79 E-value=2.7e+02 Score=21.94 Aligned_cols=48 Identities=4% Similarity=0.076 Sum_probs=31.7
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCCCCCcccccccccccccccchhcccCCCcceEEEEeC
Q 044284 111 ARALIEYVSQYGVETMLLGAPTKNGLSRSSFCRLFKASDTPGTVLKWAPDFCNVYIVSK 169 (421)
Q Consensus 111 a~aIve~A~~~~idlIVmGs~gr~~f~~~~~~r~~~~~sVa~~V~k~Ap~~C~V~VV~k 169 (421)
....+++..++.+|+|+|+..-.+ .. +.++...+-+.- ..++|+++..
T Consensus 32 ~~~~~~~~~~~~~d~iiid~~~~~-~~---------~~~~~~~i~~~~-~~~~ii~~t~ 79 (112)
T PF00072_consen 32 GEEALELLKKHPPDLIIIDLELPD-GD---------GLELLEQIRQIN-PSIPIIVVTD 79 (112)
T ss_dssp HHHHHHHHHHSTESEEEEESSSSS-SB---------HHHHHHHHHHHT-TTSEEEEEES
T ss_pred HHHHHHHhcccCceEEEEEeeecc-cc---------cccccccccccc-ccccEEEecC
Confidence 567778889999999999976322 22 224555554433 4578888873
No 255
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=22.65 E-value=4.1e+02 Score=26.77 Aligned_cols=137 Identities=11% Similarity=0.048 Sum_probs=70.7
Q ss_pred CEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhh-hcC
Q 044284 19 KIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCT-RRH 97 (421)
Q Consensus 19 ~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~-~~g 97 (421)
..+.|=+=|+.- ..+..|+..+...|...+=||.-.|.....-.+.+ ....+. -....+++...+..+. ...
T Consensus 63 ~p~~vQl~g~~p--~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~G----s~Ll~~-~~~~~eiv~avr~~~~~~~p 135 (312)
T PRK10550 63 TLVRIQLLGQYP--QWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGG----ATLLKD-PELIYQGAKAMREAVPAHLP 135 (312)
T ss_pred CcEEEEeccCCH--HHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCc----hHhhcC-HHHHHHHHHHHHHhcCCCcc
Confidence 345666666543 33444555555557666667776654321111111 111111 1346677777776653 233
Q ss_pred CceEEEEE-EcCCHHHHHHHHHHHcCCCEEEEcCCCCCCCcccccccccccc----cccchhcccCCCcceEEEEeCCcc
Q 044284 98 IQCELVVL-ERQDVARALIEYVSQYGVETMLLGAPTKNGLSRSSFCRLFKAS----DTPGTVLKWAPDFCNVYIVSKGKC 172 (421)
Q Consensus 98 V~~e~vvl-eg~dva~aIve~A~~~~idlIVmGs~gr~~f~~~~~~r~~~~~----sVa~~V~k~Ap~~C~V~VV~kgk~ 172 (421)
|.++.-+- ...+....+++.+.+.|+|.|.+-.+.+.. .+.+. +....|.+. +++-||..|.|
T Consensus 136 VsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~--------~y~g~~~~~~~i~~ik~~----~~iPVi~nGdI 203 (312)
T PRK10550 136 VTVKVRLGWDSGERKFEIADAVQQAGATELVVHGRTKED--------GYRAEHINWQAIGEIRQR----LTIPVIANGEI 203 (312)
T ss_pred eEEEEECCCCCchHHHHHHHHHHhcCCCEEEECCCCCcc--------CCCCCcccHHHHHHHHhh----cCCcEEEeCCc
Confidence 44443321 111235688889999999999996554322 22221 112233332 34557888998
Q ss_pred ce
Q 044284 173 HA 174 (421)
Q Consensus 173 ~~ 174 (421)
.+
T Consensus 204 ~t 205 (312)
T PRK10550 204 WD 205 (312)
T ss_pred CC
Confidence 76
No 256
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=22.64 E-value=3.2e+02 Score=27.34 Aligned_cols=83 Identities=11% Similarity=0.103 Sum_probs=51.0
Q ss_pred CCEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 044284 18 EKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRH 97 (421)
Q Consensus 18 ~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~g 97 (421)
..+|+|-+.|+.+...||-+|.+.-.- +.+|.+ |+...+ .+ ..++.+.|
T Consensus 93 ~~kiavl~Sg~g~nl~al~~~~~~~~l-~~~i~~--visn~~---------------------~~-------~~~A~~~g 141 (289)
T PRK13010 93 RPKVVIMVSKFDHCLNDLLYRWRMGEL-DMDIVG--IISNHP---------------------DL-------QPLAVQHD 141 (289)
T ss_pred CeEEEEEEeCCCccHHHHHHHHHCCCC-CcEEEE--EEECCh---------------------hH-------HHHHHHcC
Confidence 468899999998888888888664321 334433 332110 01 14456678
Q ss_pred CceEEEEEEcC---CHHHHHHHHHHHcCCCEEEEcCC
Q 044284 98 IQCELVVLERQ---DVARALIEYVSQYGVETMLLGAP 131 (421)
Q Consensus 98 V~~e~vvleg~---dva~aIve~A~~~~idlIVmGs~ 131 (421)
|++..+-.... +....+++..+++++|+||+..=
T Consensus 142 Ip~~~~~~~~~~~~~~~~~~~~~l~~~~~Dlivlagy 178 (289)
T PRK13010 142 IPFHHLPVTPDTKAQQEAQILDLIETSGAELVVLARY 178 (289)
T ss_pred CCEEEeCCCcccccchHHHHHHHHHHhCCCEEEEehh
Confidence 88764321111 12357889999999999998743
No 257
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=22.61 E-value=5.3e+02 Score=22.67 Aligned_cols=84 Identities=21% Similarity=0.298 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHhhhhhhhhhchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 044284 286 VEDDVKRLKMELKQTMDMYNAACKEALAAKQKAVELEKWKMKEEKRLKETQMGEERGKAKIKAAIEAAEAAQKIAKLEVQ 365 (421)
Q Consensus 286 ~eaEm~rLrlELk~tm~my~~AckEa~~Akqk~~eL~~~~~EE~~k~eea~~~eE~EKak~~aA~eaaE~ak~~ae~Eaq 365 (421)
++.|+.+|...+....+-...+.+|.-.++.+...|...-..+...+...+. |..|.|....-..+.....+
T Consensus 64 l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~ke--e~~klk~~~~~~~tq~~~e~------ 135 (151)
T PF11559_consen 64 LRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKE--ELQKLKNQLQQRKTQYEHEL------ 135 (151)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH------
Q ss_pred HHHHHHHhhhHH
Q 044284 366 KRVNAEAKALKE 377 (421)
Q Consensus 366 kR~~aE~kA~~e 377 (421)
||++-|+..+++
T Consensus 136 rkke~E~~kLk~ 147 (151)
T PF11559_consen 136 RKKEREIEKLKE 147 (151)
T ss_pred HHHHHHHHHHHH
No 258
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=22.59 E-value=3.8e+02 Score=23.89 Aligned_cols=27 Identities=19% Similarity=0.405 Sum_probs=16.3
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 044284 283 MEDVEDDVKRLKMELKQTMDMYNAACK 309 (421)
Q Consensus 283 ~~~~eaEm~rLrlELk~tm~my~~Ack 309 (421)
...+|.|+.+|.-.|+...+.-...-+
T Consensus 44 ~~~lE~eld~~~~~l~~~k~~lee~~~ 70 (143)
T PF12718_consen 44 NQQLEEELDKLEEQLKEAKEKLEESEK 70 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 455666666666666666665555443
No 259
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=22.56 E-value=3.5e+02 Score=28.49 Aligned_cols=23 Identities=13% Similarity=-0.044 Sum_probs=16.7
Q ss_pred CCEEEEccCCCHHHHHHHHHHHHHH
Q 044284 18 EKIVAVAIDKDKFSQHALKWAADNI 42 (421)
Q Consensus 18 ~~~IlVAVDgS~~S~~ALkwAid~a 42 (421)
..+||| =|+-...+||.|++...
T Consensus 2 ~~kVLv--lG~G~re~al~~~l~~~ 24 (435)
T PRK06395 2 TMKVML--VGSGGREDAIARAIKRS 24 (435)
T ss_pred ceEEEE--ECCcHHHHHHHHHHHhC
Confidence 457777 34456689999999765
No 260
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=22.54 E-value=6.2e+02 Score=23.39 Aligned_cols=28 Identities=7% Similarity=0.018 Sum_probs=14.2
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCCEEEEEE
Q 044284 25 IDKDKFSQHALKWAADNILSRHQTIKLVH 53 (421)
Q Consensus 25 VDgS~~S~~ALkwAid~a~~~ga~I~LlH 53 (421)
.|.-..+..+.++.++.+.. ..+|.+++
T Consensus 105 ~d~~~~g~~~~~~l~~~~~g-~~~i~~l~ 132 (275)
T cd06317 105 PDDISQGERSAEAMCKALGG-KGQIVVIA 132 (275)
T ss_pred ccHHHHHHHHHHHHHHHcCC-CceEEEEe
Confidence 33334556666666665422 23455554
No 261
>PF06098 Radial_spoke_3: Radial spoke protein 3; InterPro: IPR009290 This family consists of several radial spoke protein 3 (RSP3) sequences. Eukaryotic cilia and flagella present in diverse types of cells perform motile, sensory, and developmental functions in organisms from protists to humans. They are centred by precisely organised, microtubule-based structures, the axonemes. The axoneme consists of two central singlet microtubules, called the central pair, and nine outer doublet microtubules. These structures are well conserved during evolution. The outer doublet microtubules, each composed of A and B sub-fibres, are connected to each other by nexin links, while the central pair is held at the centre of the axoneme by radial spokes. The radial spokes are T-shaped structures extending from the A-tubule of each outer doublet microtubule to the centre of the axoneme. Radial spoke protein 3 (RSP3), is present at the proximal end of the spoke stalk and helps in anchoring the radial spoke to the outer doublet. It is thought that radial spokes regulate the activity of inner arm dynein through protein phosphorylation and dephosphorylation [].
Probab=22.50 E-value=7.8e+02 Score=24.78 Aligned_cols=70 Identities=24% Similarity=0.256 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHH-hhhhhhhhhchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 044284 296 ELKQTMDMYNAACKEALAAKQKAVELEKWKMKE-EKRLKETQMGEERGKAKIKAAIEAAEAAQKIAKLEVQ 365 (421)
Q Consensus 296 ELk~tm~my~~AckEa~~Akqk~~eL~~~~~EE-~~k~eea~~~eE~EKak~~aA~eaaE~ak~~ae~Eaq 365 (421)
+|++-+..|...+..-+..-|.+.+-.+++.|| ++|+.+.+...+.++.-.+.-.-.+-+-+-++.+...
T Consensus 157 ~lr~~q~~fe~~R~aEl~e~qrlE~~e~r~~eEkerR~~q~~~~~~~~~~~~~Ki~Ar~~a~~yl~~l~~~ 227 (291)
T PF06098_consen 157 ALRRQQRAFEELRNAELAEVQRLEEAEKRRREEKERRIKQQKERLEKEKELREKIAARAFAQQYLSDLVPS 227 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 262
>PF15437 PGBA_C: Plasminogen-binding protein pgbA C-terminal
Probab=22.40 E-value=4.2e+02 Score=21.73 Aligned_cols=14 Identities=50% Similarity=0.598 Sum_probs=9.4
Q ss_pred hhHHHHHHHHHHHH
Q 044284 374 ALKEAEEKRKLLDA 387 (421)
Q Consensus 374 A~~e~~ek~k~~~a 387 (421)
--+|-+|+.|+|++
T Consensus 70 DEkElEERrKALe~ 83 (86)
T PF15437_consen 70 DEKELEERRKALEM 83 (86)
T ss_pred HHHHHHHHHHhhhc
Confidence 34456788888764
No 263
>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=22.32 E-value=2.5e+02 Score=27.95 Aligned_cols=23 Identities=35% Similarity=0.328 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 044284 345 KIKAAIEAAEAAQKIAKLEVQKR 367 (421)
Q Consensus 345 k~~aA~eaaE~ak~~ae~EaqkR 367 (421)
|.+|+..+||.-|+.+-.||.+.
T Consensus 181 ~~~~~~~~ae~~~~~~~~~a~~~ 203 (280)
T cd03406 181 KQKVVEKEAETERKKAVIEAEKV 203 (280)
T ss_pred hhHHHHHHhhHHHHHHHHHHHHH
Confidence 33445555555555544444443
No 264
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=22.30 E-value=9.6e+02 Score=25.51 Aligned_cols=31 Identities=19% Similarity=0.182 Sum_probs=15.5
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044284 284 EDVEDDVKRLKMELKQTMDMYNAACKEALAAK 315 (421)
Q Consensus 284 ~~~eaEm~rLrlELk~tm~my~~AckEa~~Ak 315 (421)
..|+-+++..--.|++|..--. +.+..+.|+
T Consensus 153 ~~l~~~~~~~i~~l~~~~~~l~-~~~~~iaae 183 (420)
T COG4942 153 GALNPARAERIDALKATLKQLA-AVRAEIAAE 183 (420)
T ss_pred HHhhHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 4455556666566666555443 233334443
No 265
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=22.24 E-value=6.2e+02 Score=25.72 Aligned_cols=78 Identities=24% Similarity=0.277 Sum_probs=0.0
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHhhhhhhhhhchh-hhHHHHHHHHHHHHHHHHHHH
Q 044284 283 MEDVEDDVKRLKMELKQTMDMYNAACKEALAAKQKAVELEKWKMKEEKRLKETQMGEE-RGKAKIKAAIEAAEAAQKIAK 361 (421)
Q Consensus 283 ~~~~eaEm~rLrlELk~tm~my~~AckEa~~Akqk~~eL~~~~~EE~~k~eea~~~eE-~EKak~~aA~eaaE~ak~~ae 361 (421)
..+-+.+|..|+.+|.+...-.....+| +.+.+.++...+.+-+++-..+...|+ .++.+....-...++.+++++
T Consensus 10 L~et~~~V~~m~~~L~~~~~~L~~k~~e---~e~ll~~i~~~~~~a~~~~~~~~~ee~~~~~~~~ei~~~~~~a~~~L~~ 86 (344)
T PF12777_consen 10 LKETEEQVEEMQEELEEKQPELEEKQKE---AEELLEEIEKEQEEAEKKKAIVEEEEEEAEKQAKEIEEIKEEAEEELAE 86 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HH
Q 044284 362 LE 363 (421)
Q Consensus 362 ~E 363 (421)
-+
T Consensus 87 a~ 88 (344)
T PF12777_consen 87 AE 88 (344)
T ss_dssp HH
T ss_pred HH
No 266
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=22.10 E-value=4.3e+02 Score=26.34 Aligned_cols=82 Identities=12% Similarity=0.055 Sum_probs=47.3
Q ss_pred CCEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 044284 18 EKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRH 97 (421)
Q Consensus 18 ~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~g 97 (421)
..+|+|-+.|+.+...||-.|+..-. .+.+|.+|-.-.+ . +..++.+.|
T Consensus 89 ~~ri~vl~Sg~g~nl~al~~~~~~~~-~~~~i~~visn~~-----------------------~-------~~~lA~~~g 137 (286)
T PRK13011 89 RPKVLIMVSKFDHCLNDLLYRWRIGE-LPMDIVGVVSNHP-----------------------D-------LEPLAAWHG 137 (286)
T ss_pred CceEEEEEcCCcccHHHHHHHHHcCC-CCcEEEEEEECCc-----------------------c-------HHHHHHHhC
Confidence 45778888887777777766655432 1344444322111 0 222255678
Q ss_pred CceEEEEEEcC---CHHHHHHHHHHHcCCCEEEEcC
Q 044284 98 IQCELVVLERQ---DVARALIEYVSQYGVETMLLGA 130 (421)
Q Consensus 98 V~~e~vvleg~---dva~aIve~A~~~~idlIVmGs 130 (421)
|++..+-.... +....+++...++++|+||+..
T Consensus 138 Ip~~~~~~~~~~~~~~~~~~~~~l~~~~~Dlivlag 173 (286)
T PRK13011 138 IPFHHFPITPDTKPQQEAQVLDVVEESGAELVVLAR 173 (286)
T ss_pred CCEEEeCCCcCchhhhHHHHHHHHHHhCcCEEEEeC
Confidence 88764321111 1234688888999999999874
No 267
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=22.06 E-value=3.2e+02 Score=22.45 Aligned_cols=27 Identities=22% Similarity=0.282 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044284 344 AKIKAAIEAAEAAQKIAKLEVQKRVNA 370 (421)
Q Consensus 344 ak~~aA~eaaE~ak~~ae~EaqkR~~a 370 (421)
+.|+.-+++++---+-.++-...|...
T Consensus 15 ~~cr~~le~ve~rL~~~eLs~e~R~~l 41 (85)
T PF15188_consen 15 AQCRRRLEAVESRLRRRELSPEARRSL 41 (85)
T ss_pred HHHHHHHHHHHHHHcccCCChHHHHHH
Confidence 455555666665555555544444333
No 268
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=22.01 E-value=5.4e+02 Score=25.56 Aligned_cols=38 Identities=18% Similarity=0.337 Sum_probs=21.5
Q ss_pred hhhcCCceEEEEEE---cCCHHHHHHHHHHHcCCCEEEEcC
Q 044284 93 CTRRHIQCELVVLE---RQDVARALIEYVSQYGVETMLLGA 130 (421)
Q Consensus 93 c~~~gV~~e~vvle---g~dva~aIve~A~~~~idlIVmGs 130 (421)
|.+.||++..+-.. ..+....+++...++++|+||+..
T Consensus 133 A~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~~~~Dlivlag 173 (286)
T PRK06027 133 VERFGIPFHHVPVTKETKAEAEARLLELIDEYQPDLVVLAR 173 (286)
T ss_pred HHHhCCCEEEeccCccccchhHHHHHHHHHHhCCCEEEEec
Confidence 55667776532111 112234567777777777777764
No 269
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.97 E-value=1.1e+03 Score=26.15 Aligned_cols=78 Identities=22% Similarity=0.294 Sum_probs=53.8
Q ss_pred hhcHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhHHhHHH-hhhhhhhhhchhhhHHHHHHHHHHHH
Q 044284 283 MEDVEDDVKRLKMELKQTM-------DMYNAACKEALAAKQKAVELEKWKMKE-EKRLKETQMGEERGKAKIKAAIEAAE 354 (421)
Q Consensus 283 ~~~~eaEm~rLrlELk~tm-------~my~~AckEa~~Akqk~~eL~~~~~EE-~~k~eea~~~eE~EKak~~aA~eaaE 354 (421)
..++|++=+|||-|||.+. .=|+.--.|.|+-++.+-.|.+--.|= --|-+--|+.||-|= -.-+.++++
T Consensus 144 ~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~el--ln~q~ee~~ 221 (772)
T KOG0999|consen 144 NAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETEL--LNSQLEEAI 221 (772)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 3678899999999999864 569999999999999998886554442 233333344444222 234567777
Q ss_pred HHHHHHHH
Q 044284 355 AAQKIAKL 362 (421)
Q Consensus 355 ~ak~~ae~ 362 (421)
-.|.||+.
T Consensus 222 ~Lk~IAek 229 (772)
T KOG0999|consen 222 RLKEIAEK 229 (772)
T ss_pred HHHHHHHH
Confidence 78888875
No 270
>PF04518 Effector_1: Effector from type III secretion system; InterPro: IPR007606 This family contains several uncharacterised chlamydial proteins.
Probab=21.91 E-value=3.9e+02 Score=27.98 Aligned_cols=55 Identities=25% Similarity=0.291 Sum_probs=34.7
Q ss_pred hhhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc
Q 044284 333 KETQMGEERGKAKIKAAIEAAEAAQKIAKLEVQKRVNAEAKALKEAEEKRKLLDALWQ 390 (421)
Q Consensus 333 eea~~~eE~EKak~~aA~eaaE~ak~~ae~EaqkR~~aE~kA~~e~~ek~k~~~al~~ 390 (421)
+++..+-++||.+|+.=++.++.||...+ .+. .+.+..+.--.+.|.+++|+|.+
T Consensus 199 ~~a~~~l~~E~~~~~~di~~~~~A~~~l~--~~~-~~V~~d~~lT~~Qk~~l~d~l~~ 253 (379)
T PF04518_consen 199 FMALAKLEKEREQIRRDIKSCERAKAVLN--KQL-ARVKADAKLTSEQKSELLDSLNN 253 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH-HHHhcccccCHHHHHHHHHHHHH
Confidence 34444555788888888888877775533 221 22333334456778889999987
No 271
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=21.72 E-value=1.5e+02 Score=27.55 Aligned_cols=31 Identities=13% Similarity=0.102 Sum_probs=23.7
Q ss_pred CEEEEccCCCHHHHHHHHHHHHHHhcCCCEEE
Q 044284 19 KIVAVAIDKDKFSQHALKWAADNILSRHQTIK 50 (421)
Q Consensus 19 ~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~ 50 (421)
++|+|+|-||-.+.++.++.-.+ ...|.+|.
T Consensus 2 k~Ill~vtGsiaa~~~~~li~~L-~~~g~~V~ 32 (182)
T PRK07313 2 KNILLAVSGSIAAYKAADLTSQL-TKRGYQVT 32 (182)
T ss_pred CEEEEEEeChHHHHHHHHHHHHH-HHCCCEEE
Confidence 68999999999999988775555 44576644
No 272
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=21.54 E-value=6.8e+02 Score=23.52 Aligned_cols=33 Identities=12% Similarity=0.226 Sum_probs=27.4
Q ss_pred CCCChhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044284 279 SSQNMEDVEDDVKRLKMELKQTMDMYNAACKEA 311 (421)
Q Consensus 279 ~s~~~~~~eaEm~rLrlELk~tm~my~~AckEa 311 (421)
.++-+.-.+.|+|-||-.|+.+++-+..+.+..
T Consensus 59 Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~kl 91 (194)
T PF15619_consen 59 LPQLLQRHNEEVRVLRERLRKSQEQERELERKL 91 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567788999999999999999998887654
No 273
>PRK00766 hypothetical protein; Provisional
Probab=21.47 E-value=75 Score=30.05 Aligned_cols=69 Identities=20% Similarity=0.307 Sum_probs=48.5
Q ss_pred CCceEEEEEEcCCHHHHHHHHHHH----cCCCEEEEcCCCCCCCcccccccccccccccchhcccCCCcceEEEE--eCC
Q 044284 97 HIQCELVVLERQDVARALIEYVSQ----YGVETMLLGAPTKNGLSRSSFCRLFKASDTPGTVLKWAPDFCNVYIV--SKG 170 (421)
Q Consensus 97 gV~~e~vvleg~dva~aIve~A~~----~~idlIVmGs~gr~~f~~~~~~r~~~~~sVa~~V~k~Ap~~C~V~VV--~kg 170 (421)
|+-...+.+.|.|.-++|++.+.. ..+..|.+..-..+||. .. |+ ..+.+.+- .||++| ++.
T Consensus 42 Gv~~~~itvdG~DaT~~i~~mv~~~~~r~~i~~V~L~Git~agFN------vv---D~-~~l~~~tg--~PVI~V~r~~p 109 (194)
T PRK00766 42 GVLSRWITVDGLDATEAIIEMVNSSRHKGQLRVIMLDGITYGGFN------VV---DI-EELYRETG--LPVIVVMRKKP 109 (194)
T ss_pred eEEEEEEEECCccHHHHHHHHHHhcccccceEEEEECCEeeeeeE------Ee---cH-HHHHHHHC--CCEEEEEecCC
Confidence 555667788899999999999987 46778888888788885 32 22 44555555 789999 555
Q ss_pred ccceeec
Q 044284 171 KCHALRS 177 (421)
Q Consensus 171 k~~~~r~ 177 (421)
....++.
T Consensus 110 ~~~~ie~ 116 (194)
T PRK00766 110 DFEAIES 116 (194)
T ss_pred CHHHHHH
Confidence 5444443
No 274
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=21.47 E-value=6.2e+02 Score=22.96 Aligned_cols=44 Identities=23% Similarity=0.246 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHh
Q 044284 286 VEDDVKRLKMELKQTMDMYNAACKEALAAKQKAVELEKWKMKEE 329 (421)
Q Consensus 286 ~eaEm~rLrlELk~tm~my~~AckEa~~Akqk~~eL~~~~~EE~ 329 (421)
+..++..-....++...+...+....-.|++++.++-..-.+++
T Consensus 58 I~~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~eA~~Ii~~A~~eA 101 (167)
T PRK08475 58 ISKRLEEIQEKLKESKEKKEDALKKLEEAKEKAELIVETAKKEA 101 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444455555556666655544433333
No 275
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=21.46 E-value=2.8e+02 Score=26.97 Aligned_cols=63 Identities=19% Similarity=0.208 Sum_probs=31.1
Q ss_pred hcCCceEEEEEEcCCHHHHHHHHHHHcCCCEEEEcCCCC---CCCcccccccccccccccch-hcccCCCcceEEEEeC-
Q 044284 95 RRHIQCELVVLERQDVARALIEYVSQYGVETMLLGAPTK---NGLSRSSFCRLFKASDTPGT-VLKWAPDFCNVYIVSK- 169 (421)
Q Consensus 95 ~~gV~~e~vvleg~dva~aIve~A~~~~idlIVmGs~gr---~~f~~~~~~r~~~~~sVa~~-V~k~Ap~~C~V~VV~k- 169 (421)
+.||+|.. +.+. ++--+... .+|.+++|+..- |++. -+ .|+-+-. ++|.- ..||||++.
T Consensus 156 ~~gi~v~~--i~d~----~~~~~m~~-~vd~VliGad~v~~nG~v~-----nk--~Gt~~~a~~Ak~~--~vPv~v~~~~ 219 (282)
T PF01008_consen 156 EAGIPVTL--IPDS----AVGYVMPR-DVDKVLIGADAVLANGGVV-----NK--VGTLQLALAAKEF--NVPVYVLAES 219 (282)
T ss_dssp HTT-EEEE--E-GG----GHHHHHHC-TESEEEEE-SEEETTS-EE-----EE--TTHHHHHHHHHHT--T-EEEEE--G
T ss_pred hcceeEEE--Eech----HHHHHHHH-hCCeeEEeeeEEecCCCEe-----eh--hhHHHHHHHHHhh--CCCEEEEccc
Confidence 45887753 3322 34444455 899999999852 2233 12 1343333 33443 389999975
Q ss_pred Cccc
Q 044284 170 GKCH 173 (421)
Q Consensus 170 gk~~ 173 (421)
-|+.
T Consensus 220 ~K~~ 223 (282)
T PF01008_consen 220 YKFS 223 (282)
T ss_dssp GGBE
T ss_pred cccc
Confidence 3554
No 276
>PF15168 TRIQK: Triple QxxK/R motif-containing protein family
Probab=21.37 E-value=3.1e+02 Score=22.18 Aligned_cols=49 Identities=27% Similarity=0.345 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHHHHHH
Q 044284 363 EVQKRVNAEAKALKEAEEKRKLLDALWQSHMVLKYQSLFHILVVLILFYFYFTV 416 (421)
Q Consensus 363 EaqkR~~aE~kA~~e~~ek~k~~~al~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 416 (421)
.-+++...+++|.+-..|-+|.---+-. + -. -|--||+.||-||-+|-+
T Consensus 23 QdYkk~K~~lratk~kAeaKKta~gike--v--~l-~l~ail~lL~a~Ya~fyl 71 (79)
T PF15168_consen 23 QDYKKNKPILRATKLKAEAKKTAIGIKE--V--AL-VLAAILVLLLAFYAFFYL 71 (79)
T ss_pred HhhhhccHHHHHHHHHHHHHhhhhhhHH--H--HH-HHHHHHHHHHHHHHHHHH
Confidence 4455666677776655444443211111 1 11 156788888888876654
No 277
>PRK12569 hypothetical protein; Provisional
Probab=21.09 E-value=3.5e+02 Score=26.61 Aligned_cols=55 Identities=13% Similarity=0.109 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHhhhcCCceEEEEE---------EcCCHHHHHHHHHHHcCCCEEEEcCCC
Q 044284 78 HDIHAMEVFLPFRCYCTRRHIQCELVVL---------ERQDVARALIEYVSQYGVETMLLGAPT 132 (421)
Q Consensus 78 ~~~~a~elL~~~r~~c~~~gV~~e~vvl---------eg~dva~aIve~A~~~~idlIVmGs~g 132 (421)
+.+....-+..+..+|+..|.++.-|-- .+.+++++|++.+...+.+++++|..|
T Consensus 87 l~~~v~yQigaL~~~~~~~g~~l~hVKPHGALYN~~~~d~~la~av~~ai~~~~~~l~l~~~~~ 150 (245)
T PRK12569 87 LVNDVLYQLGALREFARAHGVRLQHVKPHGALYMHAARDEALARLLVEALARLDPLLILYCMDG 150 (245)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeeEEecCCHHHHHHHhcCHHHHHHHHHHHHHhCCCcEEEecCC
Confidence 3334444477888999999988775533 345789999999999999999999776
No 278
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=21.09 E-value=1.5e+02 Score=27.35 Aligned_cols=31 Identities=10% Similarity=0.084 Sum_probs=23.4
Q ss_pred CEEEEccCCCHHHHHHHHHHHHHHhcCCCEEE
Q 044284 19 KIVAVAIDKDKFSQHALKWAADNILSRHQTIK 50 (421)
Q Consensus 19 ~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~ 50 (421)
++|+|+|-|+-.+.+++++ ++.+...|.+|.
T Consensus 1 k~I~lgvtGs~~a~~~~~l-l~~L~~~g~~V~ 31 (177)
T TIGR02113 1 KKILLAVTGSIAAYKAADL-TSQLTKLGYDVT 31 (177)
T ss_pred CEEEEEEcCHHHHHHHHHH-HHHHHHCCCEEE
Confidence 4799999999999999965 455555576643
No 279
>PRK05406 LamB/YcsF family protein; Provisional
Probab=21.01 E-value=3.9e+02 Score=26.30 Aligned_cols=54 Identities=13% Similarity=0.048 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHhhhcCCceEEEEEE---------cCCHHHHHHHHHHHcCCCEEEEcCCC
Q 044284 79 DIHAMEVFLPFRCYCTRRHIQCELVVLE---------RQDVARALIEYVSQYGVETMLLGAPT 132 (421)
Q Consensus 79 ~~~a~elL~~~r~~c~~~gV~~e~vvle---------g~dva~aIve~A~~~~idlIVmGs~g 132 (421)
......-+..+..+|+..|.++.-|--+ +.+++++|++.+...+.+++++|..|
T Consensus 85 ~~~v~yQigAL~~~a~~~g~~l~hVKPHGALYN~~~~d~~~a~av~~ai~~~~~~l~l~~~~~ 147 (246)
T PRK05406 85 YALVLYQIGALQAIARAAGGRVSHVKPHGALYNMAAKDPALADAVAEAVAAVDPSLILVGLAG 147 (246)
T ss_pred HHHHHHHHHHHHHHHHHcCCeeEEeCccHHHHHHHhcCHHHHHHHHHHHHHhCCCcEEEecCC
Confidence 3344444777889999998887755332 35789999999999999999999876
No 280
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=20.98 E-value=1.3e+03 Score=28.02 Aligned_cols=94 Identities=18% Similarity=0.181 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHhhhhhhhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 044284 287 EDDVKRLKMELKQTMDMYNAACKEALAAKQKAVELEKWKMKEEKRLKETQMGEERGKAKIKAAIEAAEAAQKIAKLEVQK 366 (421)
Q Consensus 287 eaEm~rLrlELk~tm~my~~AckEa~~Akqk~~eL~~~~~EE~~k~eea~~~eE~EKak~~aA~eaaE~ak~~ae~Eaqk 366 (421)
.+++++|..+|...+++|.....+...-...+.+|...--+=+-+++.....- ...|-+.+...+.||++|++
T Consensus 777 ~~~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~------k~~~~~~~~l~~~i~~~E~~- 849 (1293)
T KOG0996|consen 777 KESVEKLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASV------KRLAELIEYLESQIAELEAA- 849 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH-
Q ss_pred HHHHHHhhhHHHHHHHHHHHHH
Q 044284 367 RVNAEAKALKEAEEKRKLLDAL 388 (421)
Q Consensus 367 R~~aE~kA~~e~~ek~k~~~al 388 (421)
......-.+.-.++++.+..|
T Consensus 850 -~~k~~~d~~~l~~~~~~ie~l 870 (1293)
T KOG0996|consen 850 -VLKKVVDKKRLKELEEQIEEL 870 (1293)
T ss_pred -hhhccCcHHHHHHHHHHHHHH
No 281
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o
Probab=20.97 E-value=7.4e+02 Score=23.69 Aligned_cols=36 Identities=14% Similarity=0.174 Sum_probs=26.1
Q ss_pred ChhcHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q 044284 282 NMEDVEDDVKRLKMELKQTMDMYNAACK---EALAAKQK 317 (421)
Q Consensus 282 ~~~~~eaEm~rLrlELk~tm~my~~Ack---Ea~~Akqk 317 (421)
...+.|.|+++|+.-.|.....++..+. +...|+++
T Consensus 3 ~l~~~E~~le~~~k~ik~liK~~k~~i~A~k~~~~a~~~ 41 (207)
T cd07636 3 RLKSHEAELDKTNKFIKELIKDGKSLIAALKNLSSAKRK 41 (207)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457899999999888887776665443 66667666
No 282
>cd07685 F-BAR_Fes The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), is a cytoplasmic (or nonreceptor) tyrosine kinase whose gene was first isolated from tumor-causing retroviruses. It is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells, and plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. Fes kinase has also been implicated as a tumor suppressor in colorectal cancer. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane def
Probab=20.95 E-value=7.5e+02 Score=24.23 Aligned_cols=38 Identities=16% Similarity=0.281 Sum_probs=29.5
Q ss_pred hcHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044284 284 EDVEDDVKRLKM-ELKQTMDMYNAACKEALAAKQKAVEL 321 (421)
Q Consensus 284 ~~~eaEm~rLrl-ELk~tm~my~~AckEa~~Akqk~~eL 321 (421)
+.++.||-+.-. ||.....-|..+|+.+-.|++|-.+-
T Consensus 119 q~i~~e~~~~t~~eveK~Kk~Y~~~c~~~e~AR~K~eka 157 (237)
T cd07685 119 QLLKQEYTKTTQQDIEKLKSQYRSLAKDSAQAKRKYQEA 157 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566677776663 67777778999999999999996664
No 283
>PF12277 DUF3618: Protein of unknown function (DUF3618); InterPro: IPR022062 This domain family is found in bacteria, and is approximately 50 amino acids in length.
Probab=20.95 E-value=1.3e+02 Score=21.81 Aligned_cols=23 Identities=30% Similarity=0.608 Sum_probs=19.9
Q ss_pred CChhcHHHHHHHHHHHHHHHHHH
Q 044284 281 QNMEDVEDDVKRLKMELKQTMDM 303 (421)
Q Consensus 281 ~~~~~~eaEm~rLrlELk~tm~m 303 (421)
.+.++++.|+++-|-+|-.|.+-
T Consensus 3 ~~~~~ie~dIe~tR~~La~tvd~ 25 (49)
T PF12277_consen 3 RSPDEIERDIERTRAELAETVDE 25 (49)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Confidence 45799999999999999999653
No 284
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=20.69 E-value=6.6e+02 Score=23.02 Aligned_cols=9 Identities=22% Similarity=0.398 Sum_probs=4.1
Q ss_pred hhhhhhchh
Q 044284 332 LKETQMGEE 340 (421)
Q Consensus 332 ~eea~~~eE 340 (421)
.+|-|++.|
T Consensus 87 ~EE~Rl~re 95 (157)
T PF15236_consen 87 EEEERLARE 95 (157)
T ss_pred HHHHHHHHH
Confidence 344444444
No 285
>cd07641 BAR_ASAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP1 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1) is also known as DDEF1 (Development and Differentiation Enhancing Factor 1), AMAP1, centaurin beta-4, or PAG2. ASAP1 is an Arf GTPase activating protein (GAP) with activity towards Arf1 and Arf5 but not Arf6 However, it has been shown to bind GTP-Arf6 stably without GAP activity. It has been implicated in cell growth, migration, and survival, as well as in tumor invasion and malignancy. It binds paxillin and cortactin, two components of invadopodia which are essential for tumor invasiveness. It also binds focal adhesion kinase (FAK) and the SH2/SH3 adaptor CrkL. ASAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Ar
Probab=20.66 E-value=7.1e+02 Score=24.02 Aligned_cols=29 Identities=28% Similarity=0.393 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044284 286 VEDDVKRLKMELKQTMDMYNAACKEALAAKQK 317 (421)
Q Consensus 286 ~eaEm~rLrlELk~tm~my~~AckEa~~Akqk 317 (421)
|.-++|+-|.|+|.. +..++++--.|--|
T Consensus 98 lK~Dlr~~K~d~KK~---FdK~~kDye~k~~K 126 (215)
T cd07641 98 LKGDLKGVKGDLKKP---FDKAWKDYETKFTK 126 (215)
T ss_pred HHHHhhhhhHHHHhH---HHHHHHHHHHHHHH
Confidence 556788888898887 55666665554444
No 286
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=20.58 E-value=5.9e+02 Score=22.41 Aligned_cols=16 Identities=44% Similarity=0.434 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 044284 348 AAIEAAEAAQKIAKLE 363 (421)
Q Consensus 348 aA~eaaE~ak~~ae~E 363 (421)
....-+..+|||||||
T Consensus 124 ~e~~~~~~~~riaEle 139 (139)
T PF13935_consen 124 YEGEIADYAKRIAELE 139 (139)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 3344466777888886
No 287
>PRK02628 nadE NAD synthetase; Reviewed
Probab=20.23 E-value=3.6e+02 Score=30.24 Aligned_cols=37 Identities=27% Similarity=0.135 Sum_probs=28.5
Q ss_pred CCEEEEccCCCHHHHHHHHHHHHHHhcCC---CEEEEEEE
Q 044284 18 EKIVAVAIDKDKFSQHALKWAADNILSRH---QTIKLVHV 54 (421)
Q Consensus 18 ~~~IlVAVDgS~~S~~ALkwAid~a~~~g---a~I~LlHV 54 (421)
..+|+|++.|...|--++-.+++.+...| ..|+.||.
T Consensus 361 ~~~vvvglSGGiDSal~l~l~~~a~~~lg~~~~~v~~v~m 400 (679)
T PRK02628 361 LKKVVIGISGGLDSTHALLVAAKAMDRLGLPRKNILAYTM 400 (679)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHHHHhhCCCcceEEEEEC
Confidence 67999999999988877777777654334 56777777
No 288
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=20.19 E-value=9.6e+02 Score=25.97 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 044284 297 LKQTMDMYNAACKEALAAKQK 317 (421)
Q Consensus 297 Lk~tm~my~~AckEa~~Akqk 317 (421)
|...+.|.+.|-..|=.+.|+
T Consensus 505 l~niq~llkva~dnar~qekQ 525 (641)
T KOG3915|consen 505 LTNIQGLLKVAIDNARAQEKQ 525 (641)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566677777776655444333
No 289
>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=20.16 E-value=6.3e+02 Score=24.68 Aligned_cols=33 Identities=21% Similarity=0.299 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044284 286 VEDDVKRLKMELKQTMDMYNAACKEALAAKQKA 318 (421)
Q Consensus 286 ~eaEm~rLrlELk~tm~my~~AckEa~~Akqk~ 318 (421)
...++.+.-.+|...-.-|..||+|+=.|.++.
T Consensus 119 ~qk~~~~~~~~lekaKk~Y~~acke~E~A~~~~ 151 (253)
T cd07676 119 AQQHIETCWKQLESSKRRFERDCKEADRAQQYF 151 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777778888889999999999998864
No 290
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=20.14 E-value=6.8e+02 Score=22.98 Aligned_cols=85 Identities=25% Similarity=0.194 Sum_probs=0.0
Q ss_pred hhhhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCccchhhHHH-----------
Q 044284 332 LKETQMGEERGKAKIKAAIEAAEAAQKIAKLEVQKRVNAEAKALKEAEEKRKLLDALWQSHMVLKYQSL----------- 400 (421)
Q Consensus 332 ~eea~~~eE~EKak~~aA~eaaE~ak~~ae~EaqkR~~aE~kA~~e~~ek~k~~~al~~~d~~~~~~~~----------- 400 (421)
+++.....+.+-.+...+++ ++++.+|..|....+.-..+-.-..--.+-.|...-..+-|=|.
T Consensus 51 ~~~~~~~~~~~l~~~l~~~~-----~el~~le~~k~~id~~A~~~~~~~~w~gl~~l~~q~~~l~rLTf~e~sWDvMEPV 125 (180)
T PF04678_consen 51 VEEYQNSRERQLRKRLEELR-----QELAPLEKIKQEIDEKAEKRARRLLWGGLALLVVQFGILARLTFWEYSWDVMEPV 125 (180)
T ss_pred chhhhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhH
Q ss_pred --HHHHHHHHHHHHHHHHhhccC
Q 044284 401 --FHILVVLILFYFYFTVLRKSF 421 (421)
Q Consensus 401 --~~~~~~~~~~~~~~~~~~~~~ 421 (421)
|=-....+++|+||.+.++.|
T Consensus 126 TYfv~~~~~i~~y~yfl~t~re~ 148 (180)
T PF04678_consen 126 TYFVGYGTSILGYAYFLYTRREY 148 (180)
T ss_pred HHHHhHHHHHHHHHHHHHhCCCC
No 291
>PF12001 DUF3496: Domain of unknown function (DUF3496); InterPro: IPR021885 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 110 amino acids in length.
Probab=20.14 E-value=5.5e+02 Score=22.18 Aligned_cols=35 Identities=20% Similarity=0.474 Sum_probs=23.1
Q ss_pred hhcHHHHHHHHHH---HH-HHHHHHHHHHHHHHHHHHHH
Q 044284 283 MEDVEDDVKRLKM---EL-KQTMDMYNAACKEALAAKQK 317 (421)
Q Consensus 283 ~~~~eaEm~rLrl---EL-k~tm~my~~AckEa~~Akqk 317 (421)
+.|+|+|+-|.|- +- +--++.|..+|-|.+.+.+-
T Consensus 9 IkdLeselsk~Ktsq~d~~~~eLEkYkqly~eElk~r~S 47 (111)
T PF12001_consen 9 IKDLESELSKMKTSQEDSNKTELEKYKQLYLEELKLRKS 47 (111)
T ss_pred HHHHHHHHHHhHhHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888882 23 44466777777776666544
Done!