Query 044284
Match_columns 421
No_of_seqs 252 out of 1297
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 23:06:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044284.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044284hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s3t_A Nucleotide-binding prot 99.9 1.2E-23 4E-28 182.3 16.6 143 15-168 2-146 (146)
2 1mjh_A Protein (ATP-binding do 99.9 2.3E-23 7.9E-28 184.0 15.8 145 17-170 4-160 (162)
3 3hgm_A Universal stress protei 99.9 1.4E-23 5E-28 181.6 11.1 142 17-167 1-147 (147)
4 3fg9_A Protein of universal st 99.9 1.1E-22 3.8E-27 178.8 16.6 141 15-168 12-156 (156)
5 3idf_A USP-like protein; unive 99.9 2E-22 6.9E-27 173.1 15.7 136 18-168 1-138 (138)
6 2dum_A Hypothetical protein PH 99.9 1.9E-22 6.5E-27 179.8 14.8 146 17-171 4-158 (170)
7 2z08_A Universal stress protei 99.9 3.6E-22 1.2E-26 171.8 13.7 136 17-168 1-137 (137)
8 3dlo_A Universal stress protei 99.9 3.4E-22 1.2E-26 177.3 12.7 133 15-168 21-155 (155)
9 1tq8_A Hypothetical protein RV 99.9 2.8E-22 9.5E-27 179.3 11.8 144 15-171 14-160 (163)
10 2gm3_A Unknown protein; AT3G01 99.9 7.4E-22 2.5E-26 177.0 13.1 147 15-170 2-164 (175)
11 3tnj_A Universal stress protei 99.9 7.7E-22 2.6E-26 171.8 12.1 141 17-170 5-148 (150)
12 3fdx_A Putative filament prote 99.8 3.2E-21 1.1E-25 166.3 11.1 137 19-168 2-143 (143)
13 1jmv_A USPA, universal stress 99.8 1.3E-20 4.4E-25 162.4 9.1 138 17-170 1-139 (141)
14 3olq_A Universal stress protei 99.8 2.3E-19 7.8E-24 174.9 14.2 146 17-170 6-151 (319)
15 1q77_A Hypothetical protein AQ 99.8 2.4E-19 8.3E-24 154.0 8.1 133 16-168 2-138 (138)
16 3ab8_A Putative uncharacterize 99.8 6.9E-19 2.4E-23 167.5 10.8 141 19-170 1-150 (268)
17 3mt0_A Uncharacterized protein 99.8 2.1E-18 7.3E-23 166.6 13.9 136 17-169 133-276 (290)
18 3loq_A Universal stress protei 99.8 3.8E-19 1.3E-23 172.0 8.2 143 17-171 21-164 (294)
19 3cis_A Uncharacterized protein 99.8 3.6E-18 1.2E-22 166.5 14.5 143 15-171 16-163 (309)
20 3olq_A Universal stress protei 99.7 6.5E-18 2.2E-22 164.5 13.0 143 17-171 155-307 (319)
21 3mt0_A Uncharacterized protein 99.7 4.8E-18 1.6E-22 164.2 10.2 124 17-170 6-129 (290)
22 3loq_A Universal stress protei 99.7 2E-17 6.9E-22 159.9 12.5 124 16-170 168-291 (294)
23 3cis_A Uncharacterized protein 99.7 5.2E-17 1.8E-21 158.3 14.6 135 17-169 170-306 (309)
24 3ab8_A Putative uncharacterize 99.6 4.2E-15 1.4E-19 141.3 11.2 116 17-168 153-268 (268)
25 3a2k_A TRNA(Ile)-lysidine synt 95.2 0.09 3.1E-06 54.2 10.9 96 18-132 18-129 (464)
26 1wy5_A TILS, hypothetical UPF0 94.8 0.23 7.9E-06 48.3 12.0 96 17-132 23-135 (317)
27 1ni5_A Putative cell cycle pro 90.8 0.49 1.7E-05 48.2 7.8 93 18-132 13-118 (433)
28 1k92_A Argininosuccinate synth 89.0 1.2 4E-05 46.0 8.8 37 18-58 10-46 (455)
29 3bl5_A Queuosine biosynthesis 86.2 5 0.00017 35.9 10.5 89 19-133 4-124 (219)
30 1kor_A Argininosuccinate synth 83.8 6.8 0.00023 39.4 11.2 36 19-57 1-36 (400)
31 2nz2_A Argininosuccinate synth 83.8 4.6 0.00016 40.9 9.9 35 19-57 6-40 (413)
32 1zun_A Sulfate adenylyltransfe 83.5 2.5 8.6E-05 41.4 7.6 98 18-137 46-161 (325)
33 3qwe_A GMIP, GEM-interacting p 82.9 25 0.00085 33.8 14.1 52 281-332 101-152 (279)
34 1efp_B ETF, protein (electron 81.6 3.3 0.00011 39.1 7.4 82 27-137 35-128 (252)
35 1efv_B Electron transfer flavo 81.4 4.1 0.00014 38.5 8.0 82 27-137 38-131 (255)
36 2pg3_A Queuosine biosynthesis 80.4 11 0.00037 34.3 10.3 35 19-57 3-37 (232)
37 2c5s_A THII, probable thiamine 79.5 5 0.00017 40.5 8.4 36 18-57 187-222 (413)
38 1sur_A PAPS reductase; assimil 79.5 4.7 0.00016 36.4 7.5 91 19-136 45-161 (215)
39 1o97_C Electron transferring f 78.3 2.1 7.3E-05 40.7 4.9 86 24-137 32-127 (264)
40 2ywb_A GMP synthase [glutamine 76.3 11 0.00038 38.8 10.1 87 19-131 210-317 (503)
41 1vl2_A Argininosuccinate synth 76.0 15 0.00051 37.3 10.6 39 15-57 11-49 (421)
42 3tqi_A GMP synthase [glutamine 75.8 3.9 0.00013 42.7 6.4 88 19-131 231-339 (527)
43 2dpl_A GMP synthetase, GMP syn 75.4 8.6 0.00029 37.1 8.4 89 19-132 21-130 (308)
44 3g40_A Na-K-CL cotransporter; 75.0 11 0.00037 36.5 8.8 94 18-131 20-118 (294)
45 2hma_A Probable tRNA (5-methyl 73.4 9 0.00031 38.1 8.2 97 18-132 9-133 (376)
46 3k32_A Uncharacterized protein 70.8 11 0.00037 33.8 7.5 36 19-58 7-42 (203)
47 2oq2_A Phosphoadenosine phosph 70.6 10 0.00035 35.5 7.5 40 18-58 41-80 (261)
48 3oja_B Anopheles plasmodium-re 70.2 77 0.0026 32.5 14.9 26 285-310 460-485 (597)
49 3hnw_A Uncharacterized protein 69.7 15 0.00052 31.5 7.7 54 281-334 82-135 (138)
50 1vbk_A Hypothetical protein PH 68.5 37 0.0013 32.6 11.1 88 17-132 178-265 (307)
51 2efk_A CDC42-interacting prote 67.9 38 0.0013 31.6 11.0 38 284-321 119-156 (301)
52 2efl_A Formin-binding protein 66.2 43 0.0015 31.2 11.0 38 284-321 126-163 (305)
53 2iel_A Hypothetical protein TT 64.0 35 0.0012 29.4 8.7 79 78-167 52-133 (138)
54 1cii_A Colicin IA; bacteriocin 63.8 1.1E+02 0.0036 31.5 13.4 89 284-380 335-432 (602)
55 2wsi_A FAD synthetase; transfe 63.1 24 0.00084 33.9 8.7 97 19-137 54-172 (306)
56 2xry_A Deoxyribodipyrimidine p 61.6 29 0.00099 35.4 9.4 97 20-131 38-136 (482)
57 1gpm_A GMP synthetase, XMP ami 61.2 26 0.00089 36.3 9.0 88 19-131 228-337 (525)
58 2wte_A CSA3; antiviral protein 60.1 1.1E+02 0.0037 28.3 12.3 92 18-132 8-103 (244)
59 4grd_A N5-CAIR mutase, phospho 59.4 13 0.00044 33.2 5.4 61 92-168 34-97 (173)
60 2der_A TRNA-specific 2-thiouri 58.3 33 0.0011 34.1 8.8 99 17-133 16-143 (380)
61 4b4k_A N5-carboxyaminoimidazol 57.5 18 0.00062 32.5 6.0 61 92-168 44-107 (181)
62 3abh_A Pacsin2, protein kinase 56.9 57 0.0019 30.8 10.0 37 284-320 139-182 (312)
63 3haj_A Human pacsin2 F-BAR; pa 56.9 44 0.0015 34.1 9.8 38 284-321 132-176 (486)
64 3vkg_A Dynein heavy chain, cyt 56.5 63 0.0021 41.0 12.4 8 383-390 2077-2084(3245)
65 2b5u_A Colicin E3; high resolu 52.6 52 0.0018 34.0 9.1 17 383-399 364-380 (551)
66 2x3v_A Syndapin I, protein kin 52.6 1.3E+02 0.0043 28.6 11.8 32 288-319 141-172 (337)
67 3oow_A Phosphoribosylaminoimid 51.5 24 0.00082 31.3 5.7 63 90-168 25-90 (166)
68 3kuu_A Phosphoribosylaminoimid 51.1 21 0.00072 31.9 5.3 63 90-168 32-97 (174)
69 3trh_A Phosphoribosylaminoimid 51.0 19 0.00065 32.1 5.0 64 89-168 25-91 (169)
70 3ih5_A Electron transfer flavo 50.6 56 0.0019 29.7 8.5 85 19-132 4-101 (217)
71 2ywx_A Phosphoribosylaminoimid 49.8 24 0.00084 31.0 5.5 65 89-169 18-82 (157)
72 3umv_A Deoxyribodipyrimidine p 49.5 73 0.0025 32.9 10.0 82 33-128 54-135 (506)
73 1xmp_A PURE, phosphoribosylami 48.7 26 0.00088 31.2 5.5 62 91-168 32-96 (170)
74 1np7_A DNA photolyase; protein 47.9 83 0.0028 32.0 10.1 88 33-131 22-109 (489)
75 3rjz_A N-type ATP pyrophosphat 47.5 77 0.0026 29.4 8.9 94 19-132 5-100 (237)
76 3ors_A N5-carboxyaminoimidazol 46.8 27 0.00093 30.8 5.3 64 89-168 22-88 (163)
77 1u11_A PURE (N5-carboxyaminoim 46.7 26 0.00089 31.5 5.3 62 91-168 42-106 (182)
78 2bzb_A Conserved domain protei 45.7 31 0.0011 25.5 4.7 39 283-321 3-41 (62)
79 3lp6_A Phosphoribosylaminoimid 45.4 26 0.00091 31.2 5.1 63 90-168 27-92 (174)
80 4efa_E V-type proton ATPase su 44.8 1.8E+02 0.0061 26.4 16.4 36 281-329 8-43 (233)
81 1u3d_A Cryptochrome 1 apoprote 44.8 86 0.003 32.1 9.7 96 19-130 12-109 (509)
82 2wq7_A RE11660P; lyase-DNA com 44.4 59 0.002 33.8 8.4 100 20-131 30-133 (543)
83 3rg8_A Phosphoribosylaminoimid 44.3 24 0.00083 31.0 4.6 64 89-168 21-88 (159)
84 2dfs_A Myosin-5A; myosin-V, in 44.3 3E+02 0.01 31.1 14.7 17 307-323 975-991 (1080)
85 4dyl_A Tyrosine-protein kinase 44.0 56 0.0019 32.5 7.9 34 288-321 126-160 (406)
86 1o4v_A Phosphoribosylaminoimid 43.9 27 0.00094 31.4 4.9 63 90-168 33-98 (183)
87 3vem_A Helicase protein MOM1; 43.4 1.4E+02 0.0048 24.7 9.6 23 283-305 34-56 (115)
88 3vkg_A Dynein heavy chain, cyt 42.1 1.7E+02 0.0058 37.3 13.0 6 406-411 2111-2116(3245)
89 3aco_A Pacsin2, protein kinase 40.3 1.8E+02 0.006 27.9 10.7 35 284-318 139-180 (350)
90 3oja_B Anopheles plasmodium-re 40.3 1.2E+02 0.0042 31.0 10.1 17 288-304 477-493 (597)
91 3fy4_A 6-4 photolyase; DNA rep 39.4 34 0.0012 35.7 5.7 88 33-131 21-112 (537)
92 2q2f_A Selenoprotein S; anti-p 39.1 63 0.0022 25.5 5.7 26 309-334 39-64 (89)
93 2o8v_A Phosphoadenosine phosph 38.9 52 0.0018 30.4 6.3 35 19-57 46-80 (252)
94 3tul_A Cell invasion protein S 38.2 2E+02 0.0067 24.9 9.4 95 295-390 55-149 (158)
95 2j4d_A Cryptochrome 3, cryptoc 38.0 1.7E+02 0.0059 30.0 10.7 103 18-131 39-144 (525)
96 2oa5_A Hypothetical protein BQ 36.2 24 0.00081 29.2 3.0 21 280-300 7-27 (110)
97 1iv0_A Hypothetical protein; r 36.1 40 0.0014 26.9 4.4 21 110-130 39-59 (98)
98 3iox_A AGI/II, PA; alpha helix 36.1 2.3E+02 0.0079 29.2 10.9 25 286-310 14-38 (497)
99 2c0s_A Conserved domain protei 34.5 32 0.0011 25.6 3.2 40 282-321 2-41 (64)
100 3p52_A NH(3)-dependent NAD(+) 34.2 72 0.0025 29.6 6.5 37 18-57 26-62 (249)
101 2j1d_G DAAM1, disheveled-assoc 33.0 4E+02 0.014 27.0 12.5 24 280-303 291-314 (483)
102 2i1j_A Moesin; FERM, coiled-co 32.3 42 0.0015 35.3 5.0 25 20-44 15-39 (575)
103 3n0v_A Formyltetrahydrofolate 32.1 2.1E+02 0.0071 27.1 9.5 84 17-131 89-175 (286)
104 2j07_A Deoxyribodipyrimidine p 30.8 1.6E+02 0.0056 29.3 8.9 79 33-131 18-96 (420)
105 3lou_A Formyltetrahydrofolate 30.3 2.8E+02 0.0097 26.3 10.1 84 17-131 94-180 (292)
106 2a0u_A Initiation factor 2B; S 30.3 2.2E+02 0.0075 28.3 9.6 32 95-132 235-266 (383)
107 3iv3_A Tagatose 1,6-diphosphat 29.6 2.5E+02 0.0085 27.3 9.7 87 34-134 111-215 (332)
108 2e18_A NH(3)-dependent NAD(+) 29.3 72 0.0024 29.3 5.6 37 18-56 22-58 (257)
109 1i84_S Smooth muscle myosin he 28.5 2.5E+02 0.0087 31.9 10.9 25 286-310 855-879 (1184)
110 3fni_A Putative diflavin flavo 28.5 74 0.0025 27.0 5.1 46 87-135 23-69 (159)
111 1dnp_A DNA photolyase; DNA rep 28.3 60 0.0021 33.0 5.2 87 33-131 17-104 (471)
112 3qjg_A Epidermin biosynthesis 27.8 53 0.0018 29.0 4.1 35 17-52 4-38 (175)
113 3ecs_A Translation initiation 27.8 2.1E+02 0.0072 27.6 8.8 58 95-169 170-231 (315)
114 3gxq_A Putative regulator of t 27.4 29 0.001 24.0 1.8 28 99-126 11-38 (54)
115 3uow_A GMP synthetase; structu 27.2 1.6E+02 0.0054 30.7 8.3 40 16-58 253-292 (556)
116 3obv_E Protein diaphanous homo 26.8 1.5E+02 0.0052 30.1 7.9 25 284-308 326-350 (457)
117 1cii_A Colicin IA; bacteriocin 26.7 3.5E+02 0.012 27.8 10.2 38 292-329 381-418 (602)
118 1i84_S Smooth muscle myosin he 26.3 2.7E+02 0.0092 31.7 10.6 42 283-324 859-900 (1184)
119 3hly_A Flavodoxin-like domain; 26.3 81 0.0028 26.7 5.0 42 91-135 23-64 (161)
120 3o1l_A Formyltetrahydrofolate 26.1 2.4E+02 0.0083 26.9 8.8 84 17-131 104-190 (302)
121 1kd8_A GABH AIV, GCN4 acid bas 25.9 41 0.0014 22.2 2.2 16 284-299 18-33 (36)
122 1gqe_A Release factor 2, RF2; 25.0 69 0.0023 31.9 4.7 48 80-137 143-190 (365)
123 3i00_A HIP-I, huntingtin-inter 24.6 1.9E+02 0.0065 24.0 6.7 38 283-323 17-54 (120)
124 3tvs_A Cryptochrome-1; circadi 24.6 1.6E+02 0.0054 30.6 7.7 85 33-130 20-107 (538)
125 3mq9_A Bone marrow stromal ant 23.7 5.3E+02 0.018 25.3 13.0 25 357-381 443-468 (471)
126 3bvp_A INT, TP901-1 integrase; 23.4 1.3E+02 0.0044 24.7 5.6 45 87-131 28-80 (138)
127 4b9q_A Chaperone protein DNAK; 22.9 4.4E+02 0.015 27.3 10.8 67 288-358 510-577 (605)
128 1owl_A Photolyase, deoxyribodi 22.9 1.2E+02 0.0042 30.8 6.4 83 33-131 19-101 (484)
129 1v9d_A Diaphanous protein homo 22.7 2.9E+02 0.0098 26.5 8.8 25 284-308 255-279 (340)
130 3v6i_A V-type ATP synthase sub 22.3 3.8E+02 0.013 23.1 12.0 12 395-406 97-108 (187)
131 1g63_A Epidermin modifying enz 22.3 56 0.0019 29.0 3.2 36 17-53 1-36 (181)
132 2e0i_A 432AA long hypothetical 22.1 2.3E+02 0.0077 28.5 8.1 81 33-130 17-97 (440)
133 3zqu_A Probable aromatic acid 21.7 84 0.0029 28.6 4.4 34 19-53 5-38 (209)
134 4e81_A Chaperone protein DNAK; 21.5 4.4E+02 0.015 23.6 10.5 66 288-357 122-188 (219)
135 1v9d_A Diaphanous protein homo 21.2 5.4E+02 0.019 24.5 11.8 19 282-300 211-229 (340)
136 3a11_A Translation initiation 21.1 1.9E+02 0.0066 28.1 7.1 62 95-173 190-256 (338)
137 2ihr_1 Peptide chain release f 21.0 91 0.0031 31.0 4.7 48 80-137 131-178 (365)
138 2zuo_A MVP, major vault protei 21.0 8.6E+02 0.029 26.8 14.7 99 287-388 696-802 (861)
139 2i2x_B MTAC, methyltransferase 20.7 1.3E+02 0.0044 27.8 5.6 41 93-135 147-187 (258)
140 2i1j_A Moesin; FERM, coiled-co 20.6 57 0.002 34.2 3.3 39 284-322 331-369 (575)
141 3sig_A PArg, poly(ADP-ribose) 20.5 75 0.0026 30.3 3.8 26 112-137 201-226 (277)
142 2h31_A Multifunctional protein 20.3 94 0.0032 31.5 4.7 46 91-136 286-335 (425)
143 3qja_A IGPS, indole-3-glycerol 20.2 3.4E+02 0.012 25.3 8.4 74 86-174 151-224 (272)
144 1xng_A NH(3)-dependent NAD(+) 20.1 1.6E+02 0.0054 27.2 6.1 37 18-57 25-61 (268)
No 1
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=99.91 E-value=1.2e-23 Score=182.28 Aligned_cols=143 Identities=15% Similarity=0.154 Sum_probs=122.0
Q ss_pred CCCCCEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhh
Q 044284 15 EGREKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCT 94 (421)
Q Consensus 15 ~~~~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~ 94 (421)
..++++||||+|+|+.|.+|++||++++...+++|+++||.++....... .......+.+..++++++.|..+...+.
T Consensus 2 ~~~~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 79 (146)
T 3s3t_A 2 NARYTNILVPVDSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYHTPA--LDPVLSELLDAEAAHAKDAMRQRQQFVA 79 (146)
T ss_dssp CCCCCEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCCCGG--GHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCccceEEEEcCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccc--cccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999889999999999876432111 0013344556677888999999999999
Q ss_pred hcCC-ceEEEEEEcCCHHHHHHH-HHHHcCCCEEEEcCCCCCCCcccccccccccccccchhcccCCCcceEEEEe
Q 044284 95 RRHI-QCELVVLERQDVARALIE-YVSQYGVETMLLGAPTKNGLSRSSFCRLFKASDTPGTVLKWAPDFCNVYIVS 168 (421)
Q Consensus 95 ~~gV-~~e~vvleg~dva~aIve-~A~~~~idlIVmGs~gr~~f~~~~~~r~~~~~sVa~~V~k~Ap~~C~V~VV~ 168 (421)
..|+ .++..+..| +++++|++ +|++.++|+||||++|++++. +.|+ ||++..|++++| |||+||+
T Consensus 80 ~~g~~~~~~~~~~g-~~~~~I~~~~a~~~~~dliV~G~~~~~~~~-----~~~~-Gs~~~~vl~~~~--~pVlvV~ 146 (146)
T 3s3t_A 80 TTSAPNLKTEISYG-IPKHTIEDYAKQHPEIDLIVLGATGTNSPH-----RVAV-GSTTSYVVDHAP--CNVIVIR 146 (146)
T ss_dssp TSSCCCCEEEEEEE-CHHHHHHHHHHHSTTCCEEEEESCCSSCTT-----TCSS-CHHHHHHHHHCS--SEEEEEC
T ss_pred hcCCcceEEEEecC-ChHHHHHHHHHhhcCCCEEEECCCCCCCcc-----eEEE-cchHHHHhccCC--CCEEEeC
Confidence 9999 999887776 79999999 999999999999999999998 6665 799999999999 9999985
No 2
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=99.90 E-value=2.3e-23 Score=184.01 Aligned_cols=145 Identities=15% Similarity=0.134 Sum_probs=118.6
Q ss_pred CCCEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCC-----CCCCcc-cc--c-cch---HHHHHHHHHHHHHH
Q 044284 17 REKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKS-----HSNNQY-SV--G-ISE---ELIEQQQHDIHAME 84 (421)
Q Consensus 17 ~~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~-----~~~~~~-~~--~-~~~---~~~~~~~~~~~a~e 84 (421)
++++||||+|+|+.|.+|++||++++...+++|++|||.++. ...... .. . ... ...+.+...+++++
T Consensus 4 ~~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (162)
T 1mjh_A 4 MYKKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKN 83 (162)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHH
T ss_pred ccceEEEEeCCCHHHHHHHHHHHHHHhhcCCeEEEEEEecCccccccccccccccccccccchhhhHHHHHHHHHHHHHH
Confidence 578999999999999999999999998889999999998754 210110 00 0 111 22455566678888
Q ss_pred HHHHHHHHhhhcCCceEEEEEEcCCHHHHHHHHHHHcCCCEEEEcCCCCCCCcccccccccccccccchhcccCCCcceE
Q 044284 85 VFLPFRCYCTRRHIQCELVVLERQDVARALIEYVSQYGVETMLLGAPTKNGLSRSSFCRLFKASDTPGTVLKWAPDFCNV 164 (421)
Q Consensus 85 lL~~~r~~c~~~gV~~e~vvleg~dva~aIve~A~~~~idlIVmGs~gr~~f~~~~~~r~~~~~sVa~~V~k~Ap~~C~V 164 (421)
.|..+...+...|++++..+..| +|+++|+++|+++++|+||||++|++++. +.|+ |||+..|+++++ |||
T Consensus 84 ~l~~~~~~~~~~g~~~~~~v~~G-~~~~~I~~~a~~~~~dlIV~G~~g~~~~~-----~~~~-GSv~~~vl~~~~--~pV 154 (162)
T 1mjh_A 84 KMENIKKELEDVGFKVKDIIVVG-IPHEEIVKIAEDEGVDIIIMGSHGKTNLK-----EILL-GSVTENVIKKSN--KPV 154 (162)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEEE-CHHHHHHHHHHHTTCSEEEEESCCSSCCT-----TCSS-CHHHHHHHHHCC--SCE
T ss_pred HHHHHHHHHHHcCCceEEEEcCC-CHHHHHHHHHHHcCCCEEEEcCCCCCCcc-----ceEe-cchHHHHHHhCC--CCE
Confidence 99999999988999999877765 89999999999999999999999999998 6665 799999999999 999
Q ss_pred EEEeCC
Q 044284 165 YIVSKG 170 (421)
Q Consensus 165 ~VV~kg 170 (421)
+||+.+
T Consensus 155 lvv~~~ 160 (162)
T 1mjh_A 155 LVVKRK 160 (162)
T ss_dssp EEECCC
T ss_pred EEEeCC
Confidence 999864
No 3
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=99.90 E-value=1.4e-23 Score=181.57 Aligned_cols=142 Identities=16% Similarity=0.158 Sum_probs=115.9
Q ss_pred CCCEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCC-CCCccc-cccchHHHHHHHHHHHHHHHHHHHHHHhh
Q 044284 17 REKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSH-SNNQYS-VGISEELIEQQQHDIHAMEVFLPFRCYCT 94 (421)
Q Consensus 17 ~~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~-~~~~~~-~~~~~~~~~~~~~~~~a~elL~~~r~~c~ 94 (421)
|+++||||+|+|+.|.+|++||++++...+++|+++||.++.. ...... ........+.+..++.+++.+..+...+.
T Consensus 1 M~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 80 (147)
T 3hgm_A 1 MFNRIMVPVDGSKGAVKALEKGVGLQQLTGAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQAKTRAT 80 (147)
T ss_dssp CCSEEEEECCSBHHHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999998899999999998653 100000 01111112234455678888999999999
Q ss_pred hcCCce---EEEEEEcCCHHHHHHHHHHHcCCCEEEEcCCCCCCCcccccccccccccccchhcccCCCcceEEEE
Q 044284 95 RRHIQC---ELVVLERQDVARALIEYVSQYGVETMLLGAPTKNGLSRSSFCRLFKASDTPGTVLKWAPDFCNVYIV 167 (421)
Q Consensus 95 ~~gV~~---e~vvleg~dva~aIve~A~~~~idlIVmGs~gr~~f~~~~~~r~~~~~sVa~~V~k~Ap~~C~V~VV 167 (421)
..|+++ +..+..| +|+++|+++|+++++|+||||++|++++. +.|+ ||++..|++++| |||+||
T Consensus 81 ~~g~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dliV~G~~~~~~~~-----~~~~-Gs~~~~vl~~~~--~pVlvV 147 (147)
T 3hgm_A 81 ELGVPADKVRAFVKGG-RPSRTIVRFARKRECDLVVIGAQGTNGDK-----SLLL-GSVAQRVAGSAH--CPVLVV 147 (147)
T ss_dssp HTTCCGGGEEEEEEES-CHHHHHHHHHHHTTCSEEEECSSCTTCCS-----CCCC-CHHHHHHHHHCS--SCEEEC
T ss_pred hcCCCccceEEEEecC-CHHHHHHHHHHHhCCCEEEEeCCCCcccc-----ceee-ccHHHHHHhhCC--CCEEEC
Confidence 999998 8766665 89999999999999999999999999998 6665 799999999999 999996
No 4
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=99.89 E-value=1.1e-22 Score=178.80 Aligned_cols=141 Identities=18% Similarity=0.230 Sum_probs=118.8
Q ss_pred CCCCCEEEEccC--CCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHH
Q 044284 15 EGREKIVAVAID--KDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCY 92 (421)
Q Consensus 15 ~~~~~~IlVAVD--gS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~ 92 (421)
..++++||||+| +|+.|.+|++||++++...+++|++|||.++....... .....+.+...+++++.|..+...
T Consensus 12 ~~~~~~ILv~vD~~~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~ 87 (156)
T 3fg9_A 12 PLVYRRILLTVDEDDNTSSERAFRYATTLAHDYDVPLGICSVLESEDINIFD----SLTPSKIQAKRKHVEDVVAEYVQL 87 (156)
T ss_dssp CCCCC-EEEECCSCCCHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCTTCCC----SSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCceEEEEECCCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEeCCCccccc----cCCHHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999 99999999999999999889999999999876432111 112345566677888999999999
Q ss_pred hhhcCC-ceEEEEEEcCCHHHHHHHH-HHHcCCCEEEEcCCCCCCCcccccccccccccccchhcccCCCcceEEEEe
Q 044284 93 CTRRHI-QCELVVLERQDVARALIEY-VSQYGVETMLLGAPTKNGLSRSSFCRLFKASDTPGTVLKWAPDFCNVYIVS 168 (421)
Q Consensus 93 c~~~gV-~~e~vvleg~dva~aIve~-A~~~~idlIVmGs~gr~~f~~~~~~r~~~~~sVa~~V~k~Ap~~C~V~VV~ 168 (421)
+...|+ .++..+..+++|+++|+++ |++.++|+||||++|++++. + |+ |||+..|++++| |||+||+
T Consensus 88 ~~~~g~~~~~~~v~~~g~~~~~I~~~~a~~~~~DlIV~G~~g~~~~~-----~-~~-Gs~~~~vl~~a~--~PVlvV~ 156 (156)
T 3fg9_A 88 AEQRGVNQVEPLVYEGGDVDDVILEQVIPEFKPDLLVTGADTEFPHS-----K-IA-GAIGPRLARKAP--ISVIVVR 156 (156)
T ss_dssp HHHHTCSSEEEEEEECSCHHHHHHHTHHHHHCCSEEEEETTCCCTTS-----S-SC-SCHHHHHHHHCS--SEEEEEC
T ss_pred HHHcCCCceEEEEEeCCCHHHHHHHHHHHhcCCCEEEECCCCCCccc-----e-ee-cchHHHHHHhCC--CCEEEeC
Confidence 999999 4888877756899999999 99999999999999999997 5 54 799999999999 9999985
No 5
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=99.89 E-value=2e-22 Score=173.07 Aligned_cols=136 Identities=19% Similarity=0.263 Sum_probs=115.1
Q ss_pred CCEEEEccCCCHHHHHHHHHHHHHH-hcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHH-HHHHHHHHHHHHHhhh
Q 044284 18 EKIVAVAIDKDKFSQHALKWAADNI-LSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHD-IHAMEVFLPFRCYCTR 95 (421)
Q Consensus 18 ~~~IlVAVDgS~~S~~ALkwAid~a-~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~elL~~~r~~c~~ 95 (421)
+++||||+|+|+.|.+|++||++++ ...+++|+++||.++...... .......+.+..+ +++++.|..+...+..
T Consensus 1 ~~~ILv~~D~s~~s~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 77 (138)
T 3idf_A 1 MKKLLFAIDDTEACERAAQYILDMFGKDADCTLTLIHVKPEFMLYGE---AVLAAYDEIEMKEEEKAKLLTQKFSTFFTE 77 (138)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHHHHTTCTTEEEEEEEEECCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CceEEEEeCCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCcccc---cccCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999 888999999999987643111 0112223445556 7888999999999999
Q ss_pred cCCceEEEEEEcCCHHHHHHHHHHHcCCCEEEEcCCCCCCCcccccccccccccccchhcccCCCcceEEEEe
Q 044284 96 RHIQCELVVLERQDVARALIEYVSQYGVETMLLGAPTKNGLSRSSFCRLFKASDTPGTVLKWAPDFCNVYIVS 168 (421)
Q Consensus 96 ~gV~~e~vvleg~dva~aIve~A~~~~idlIVmGs~gr~~f~~~~~~r~~~~~sVa~~V~k~Ap~~C~V~VV~ 168 (421)
.|++++..+..| +|+++|+++|+ ++|+||||++|++++. +.| ||++..|++++| |||+||+
T Consensus 78 ~g~~~~~~v~~g-~~~~~I~~~a~--~~dliV~G~~~~~~~~-----~~~--Gs~~~~vl~~~~--~pVlvv~ 138 (138)
T 3idf_A 78 KGINPFVVIKEG-EPVEMVLEEAK--DYNLLIIGSSENSFLN-----KIF--ASHQDDFIQKAP--IPVLIVK 138 (138)
T ss_dssp TTCCCEEEEEES-CHHHHHHHHHT--TCSEEEEECCTTSTTS-----SCC--CCTTCHHHHHCS--SCEEEEC
T ss_pred CCCCeEEEEecC-ChHHHHHHHHh--cCCEEEEeCCCcchHH-----HHh--CcHHHHHHhcCC--CCEEEeC
Confidence 999999887776 79999999999 9999999999999997 555 799999999999 9999985
No 6
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=99.88 E-value=1.9e-22 Score=179.76 Aligned_cols=146 Identities=14% Similarity=0.028 Sum_probs=115.7
Q ss_pred CCCEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCcc-ccc------cchHHHHHHHHHHHHHHHHHHH
Q 044284 17 REKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQY-SVG------ISEELIEQQQHDIHAMEVFLPF 89 (421)
Q Consensus 17 ~~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~-~~~------~~~~~~~~~~~~~~a~elL~~~ 89 (421)
++++||||+|+|+.|.+|++||++++...+++|++|||.++....... ... ......+.+..++++++.|..+
T Consensus 4 m~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 83 (170)
T 2dum_A 4 MFRKVLFPTDFSEGAYRAVEVFEKRNKMEVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKEEASRKLQEK 83 (170)
T ss_dssp CCSEEEEECCSSHHHHHHHHHHHHHCCSCCSEEEEEEEEETTGGGCCC------------CCTTSHHHHHHHHHHHHHHH
T ss_pred ccceEEEEecCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999889999999998764321000 000 0011123345566778889999
Q ss_pred HHHhhhcCCceEE--EEEEcCCHHHHHHHHHHHcCCCEEEEcCCCCCCCcccccccccccccccchhcccCCCcceEEEE
Q 044284 90 RCYCTRRHIQCEL--VVLERQDVARALIEYVSQYGVETMLLGAPTKNGLSRSSFCRLFKASDTPGTVLKWAPDFCNVYIV 167 (421)
Q Consensus 90 r~~c~~~gV~~e~--vvleg~dva~aIve~A~~~~idlIVmGs~gr~~f~~~~~~r~~~~~sVa~~V~k~Ap~~C~V~VV 167 (421)
...+...|+.++. .+..| +|+++|+++|+++++|+||||++|++++. +.|+ |||+..|+++++ |||+||
T Consensus 84 ~~~~~~~g~~~~~~~~~~~g-~~~~~I~~~a~~~~~DlIV~G~~g~~~~~-----~~~~-Gsv~~~vl~~~~--~PVlvv 154 (170)
T 2dum_A 84 AEEVKRAFRAKNVRTIIRFG-IPWDEIVKVAEEENVSLIILPSRGKLSLS-----HEFL-GSTVMRVLRKTK--KPVLII 154 (170)
T ss_dssp HHHHHHHTTCSEEEEEEEEE-CHHHHHHHHHHHTTCSEEEEESCCCCC-------TTCC-CHHHHHHHHHCS--SCEEEE
T ss_pred HHHHHHcCCceeeeeEEecC-ChHHHHHHHHHHcCCCEEEECCCCCCccc-----ccee-chHHHHHHHhCC--CCEEEE
Confidence 8888888999987 66665 89999999999999999999999999997 6665 799999999999 999999
Q ss_pred eCCc
Q 044284 168 SKGK 171 (421)
Q Consensus 168 ~kgk 171 (421)
+.+.
T Consensus 155 ~~~~ 158 (170)
T 2dum_A 155 KEVD 158 (170)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 8654
No 7
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=99.88 E-value=3.6e-22 Score=171.78 Aligned_cols=136 Identities=18% Similarity=0.168 Sum_probs=106.0
Q ss_pred CCCEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 044284 17 REKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRR 96 (421)
Q Consensus 17 ~~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~ 96 (421)
|+++||||+|+|+.|.+|++||++++...+++|+++||.++... .... . ....+.+..++++++.|..+... .
T Consensus 1 m~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~-~~~~--~-~~~~~~~~~~~~~~~~l~~~~~~---~ 73 (137)
T 2z08_A 1 MFKTILLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYEPVPD-YLGE--P-FFEEALRRRLERAEGVLEEARAL---T 73 (137)
T ss_dssp CCSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEECC------------------CHHHHHHHHHHHHHHHH---H
T ss_pred CcceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCCCc-cccc--c-chHHHHHHHHHHHHHHHHHHHHH---c
Confidence 57899999999999999999999999988999999999975421 1100 0 11123334455667777766543 6
Q ss_pred CC-ceEEEEEEcCCHHHHHHHHHHHcCCCEEEEcCCCCCCCcccccccccccccccchhcccCCCcceEEEEe
Q 044284 97 HI-QCELVVLERQDVARALIEYVSQYGVETMLLGAPTKNGLSRSSFCRLFKASDTPGTVLKWAPDFCNVYIVS 168 (421)
Q Consensus 97 gV-~~e~vvleg~dva~aIve~A~~~~idlIVmGs~gr~~f~~~~~~r~~~~~sVa~~V~k~Ap~~C~V~VV~ 168 (421)
|+ .++..+..| +|+++|+++|+++++|+||||++|++++. +.|+ ||++..|+++++ |||+||+
T Consensus 74 g~~~~~~~~~~g-~~~~~I~~~a~~~~~dliV~G~~~~~~~~-----~~~~-Gs~~~~vl~~~~--~pVlvv~ 137 (137)
T 2z08_A 74 GVPKEDALLLEG-VPAEAILQAARAEKADLIVMGTRGLGALG-----SLFL-GSQSQRVVAEAP--CPVLLVR 137 (137)
T ss_dssp CCCGGGEEEEES-SHHHHHHHHHHHTTCSEEEEESSCTTCCS-----CSSS-CHHHHHHHHHCS--SCEEEEC
T ss_pred CCCccEEEEEec-CHHHHHHHHHHHcCCCEEEECCCCCchhh-----hhhh-ccHHHHHHhcCC--CCEEEeC
Confidence 88 888776654 89999999999999999999999999998 6665 799999999999 9999985
No 8
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=99.87 E-value=3.4e-22 Score=177.26 Aligned_cols=133 Identities=14% Similarity=0.179 Sum_probs=113.5
Q ss_pred CCCCCEEEEccCC-CHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHh
Q 044284 15 EGREKIVAVAIDK-DKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYC 93 (421)
Q Consensus 15 ~~~~~~IlVAVDg-S~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c 93 (421)
.-++++||||+|+ |+.|.+|++||++++...+++|++|||.++... . .....+++++.|..+...+
T Consensus 21 ~mm~~~ILv~vD~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~------~-------~~~~~~~~~~~l~~~~~~~ 87 (155)
T 3dlo_A 21 GMIYMPIVVAVDKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGR------T-------KDEDIIEAKETLSWAVSII 87 (155)
T ss_dssp -CCCCCEEEECCSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCSTT------S-------CHHHHHHHHHHHHHHHHHH
T ss_pred ccccCeEEEEECCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCc------c-------cHHHHHHHHHHHHHHHHHH
Confidence 3468999999999 999999999999999988999999999986431 0 1233456778888888888
Q ss_pred hhcCCceEEEE-EEcCCHHHHHHHHHHHcCCCEEEEcCCCCCCCcccccccccccccccchhcccCCCcceEEEEe
Q 044284 94 TRRHIQCELVV-LERQDVARALIEYVSQYGVETMLLGAPTKNGLSRSSFCRLFKASDTPGTVLKWAPDFCNVYIVS 168 (421)
Q Consensus 94 ~~~gV~~e~vv-leg~dva~aIve~A~~~~idlIVmGs~gr~~f~~~~~~r~~~~~sVa~~V~k~Ap~~C~V~VV~ 168 (421)
.+.|+.++..+ +..++|+++|+++|+++++|+||||++|++++. +.|+ |||+..|++++| |||+||+
T Consensus 88 ~~~g~~~~~~~~v~~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~-----~~~l-GSv~~~vl~~a~--~PVLvVr 155 (155)
T 3dlo_A 88 RKEGAEGEEHLLVRGKEPPDDIVDFADEVDAIAIVIGIRKRSPTG-----KLIF-GSVARDVILKAN--KPVICIK 155 (155)
T ss_dssp HHTTCCEEEEEEESSSCHHHHHHHHHHHTTCSEEEEECCEECTTS-----CEEC-CHHHHHHHHHCS--SCEEEEC
T ss_pred HhcCCCceEEEEecCCCHHHHHHHHHHHcCCCEEEECCCCCCCCC-----CEEe-ccHHHHHHHhCC--CCEEEeC
Confidence 88899887643 556799999999999999999999999999998 6665 799999999999 9999984
No 9
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=99.87 E-value=2.8e-22 Score=179.29 Aligned_cols=144 Identities=14% Similarity=0.102 Sum_probs=111.0
Q ss_pred CCCCCEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEE--EEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHH
Q 044284 15 EGREKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLV--HVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCY 92 (421)
Q Consensus 15 ~~~~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~Ll--HV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~ 92 (421)
..++++||||+|+|+.|.+|++||++++. .+++|++| ||.++..... .... ....+.+...+.+++.|..+...
T Consensus 14 ~~~~~~ILv~vD~s~~s~~al~~A~~lA~-~~a~l~ll~a~v~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~l~~~~~~ 89 (163)
T 1tq8_A 14 LSAYKTVVVGTDGSDSSMRAVDRAAQIAG-ADAKLIIASAYLPQHEDARA--ADIL-KDESYKVTGTAPIYEILHDAKER 89 (163)
T ss_dssp CCCCCEEEEECCSSHHHHHHHHHHHHHHT-TTSEEEEEEECCC-----------------------CCTHHHHHHHHHHH
T ss_pred cccCCEEEEEcCCCHHHHHHHHHHHHHhC-CCCEEEEEEeeeccCccccc--cccc-ccHHHHHHHHHHHHHHHHHHHHH
Confidence 45689999999999999999999999999 99999999 8876542200 0000 01123333445677889999988
Q ss_pred hhhcCCc-eEEEEEEcCCHHHHHHHHHHHcCCCEEEEcCCCCCCCcccccccccccccccchhcccCCCcceEEEEeCCc
Q 044284 93 CTRRHIQ-CELVVLERQDVARALIEYVSQYGVETMLLGAPTKNGLSRSSFCRLFKASDTPGTVLKWAPDFCNVYIVSKGK 171 (421)
Q Consensus 93 c~~~gV~-~e~vvleg~dva~aIve~A~~~~idlIVmGs~gr~~f~~~~~~r~~~~~sVa~~V~k~Ap~~C~V~VV~kgk 171 (421)
+...|++ ++..+..| +|+++|+++|++.++|+||||++|++++. +.|+ |||+..|++++| |||+||+...
T Consensus 90 ~~~~gv~~v~~~v~~G-~~~~~I~~~a~~~~~DLIV~G~~g~~~~~-----~~~l-GSva~~vl~~a~--~PVlvV~~~~ 160 (163)
T 1tq8_A 90 AHNAGAKNVEERPIVG-APVDALVNLADEEKADLLVVGNVGLSTIA-----GRLL-GSVPANVSRRAK--VDVLIVHTTE 160 (163)
T ss_dssp HHTTTCCEEEEEEECS-SHHHHHHHHHHHTTCSEEEEECCCCCSHH-----HHHT-BBHHHHHHHHTT--CEEEEECCC-
T ss_pred HHHcCCCeEEEEEecC-CHHHHHHHHHHhcCCCEEEECCCCCCccc-----ceee-ccHHHHHHHhCC--CCEEEEeCCC
Confidence 9888998 88877664 89999999999999999999999999997 6665 799999999999 9999998543
No 10
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=99.87 E-value=7.4e-22 Score=176.96 Aligned_cols=147 Identities=16% Similarity=0.260 Sum_probs=106.5
Q ss_pred CCCCCEEEEccCCCH---------HHHHHHHHHHHHHhc---CCCEEEEEEEecCCCCCC--ccc--cccchHHHHHHHH
Q 044284 15 EGREKIVAVAIDKDK---------FSQHALKWAADNILS---RHQTIKLVHVIQKSHSNN--QYS--VGISEELIEQQQH 78 (421)
Q Consensus 15 ~~~~~~IlVAVDgS~---------~S~~ALkwAid~a~~---~ga~I~LlHV~~~~~~~~--~~~--~~~~~~~~~~~~~ 78 (421)
+.++++||||||+|+ .|.+|++||++++.. .+++|++|||.++..... ... ........+.+..
T Consensus 2 ~~~~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2gm3_A 2 GSEPTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDMRQSN 81 (175)
T ss_dssp ---CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHHHHHTTSH
T ss_pred CCCccEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeecccccccccccccCCHHHHHHHHHHH
Confidence 346799999999999 999999999998754 478999999986532100 000 0011112222334
Q ss_pred HHHHHHHHHHHHHHhhhcCCceEEEEEEcCCHHHHHHHHHHHcCCCEEEEcCCCCCCCcccccccccccccccchhcccC
Q 044284 79 DIHAMEVFLPFRCYCTRRHIQCELVVLERQDVARALIEYVSQYGVETMLLGAPTKNGLSRSSFCRLFKASDTPGTVLKWA 158 (421)
Q Consensus 79 ~~~a~elL~~~r~~c~~~gV~~e~vvleg~dva~aIve~A~~~~idlIVmGs~gr~~f~~~~~~r~~~~~sVa~~V~k~A 158 (421)
.+++++.|..+...+...|+.++.++..| +++++|+++|.++++|+||||++|++++. +.|+ |||+..|++++
T Consensus 82 ~~~~~~~l~~~~~~~~~~g~~~~~~v~~G-~~~~~I~~~a~~~~~DLIVmG~~g~~~~~-----~~~~-Gsva~~vl~~a 154 (175)
T 2gm3_A 82 KAKGLHLLEFFVNKCHEIGVGCEAWIKTG-DPKDVICQEVKRVRPDFLVVGSRGLGRFQ-----KVFV-GTVSAFCVKHA 154 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEEEEEEEES-CHHHHHHHHHHHHCCSEEEEEECCCC--------------CHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHCCCceEEEEecC-CHHHHHHHHHHHhCCCEEEEeCCCCChhh-----hhhc-CchHHHHHhCC
Confidence 45677889999888888899998877765 89999999999999999999999999998 6665 79999999999
Q ss_pred CCcceEEEEeCC
Q 044284 159 PDFCNVYIVSKG 170 (421)
Q Consensus 159 p~~C~V~VV~kg 170 (421)
+ |||+||+.+
T Consensus 155 ~--~pVlvv~~~ 164 (175)
T 2gm3_A 155 E--CPVMTIKRN 164 (175)
T ss_dssp S--SCEEEEECC
T ss_pred C--CCEEEEcCC
Confidence 9 999999864
No 11
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=99.87 E-value=7.7e-22 Score=171.80 Aligned_cols=141 Identities=13% Similarity=0.119 Sum_probs=99.1
Q ss_pred CCCEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCC--CccccccchHHHHHHHHHHHHHHHHHHHHHHhh
Q 044284 17 REKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSN--NQYSVGISEELIEQQQHDIHAMEVFLPFRCYCT 94 (421)
Q Consensus 17 ~~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~ 94 (421)
++++||||+|+|+.|.+|++||++++...+++|+++||.++.... ............+.+...+++++.|..+. .
T Consensus 5 ~~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~ 81 (150)
T 3tnj_A 5 VYHHILLAVDFSSEDSQVVQKVRNLASQIGARLSLIHVLDNIPMPDTPYGTAIPLDTETTYDAMLDVEKQKLSQIG---N 81 (150)
T ss_dssp CCSEEEEECCCSTTHHHHHHHHHHHHHHHTCEEEEEEEEC--------CTTCCCSSSCCCHHHHHHHHHHHHHHHH---H
T ss_pred ccceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEEcCccccccccccccCcCHHHHHHHHHHHHHHHHHHHH---H
Confidence 479999999999999999999999999889999999999865321 11110111111233444456666666653 4
Q ss_pred hcCCce-EEEEEEcCCHHHHHHHHHHHcCCCEEEEcCCCCCCCcccccccccccccccchhcccCCCcceEEEEeCC
Q 044284 95 RRHIQC-ELVVLERQDVARALIEYVSQYGVETMLLGAPTKNGLSRSSFCRLFKASDTPGTVLKWAPDFCNVYIVSKG 170 (421)
Q Consensus 95 ~~gV~~-e~vvleg~dva~aIve~A~~~~idlIVmGs~gr~~f~~~~~~r~~~~~sVa~~V~k~Ap~~C~V~VV~kg 170 (421)
+.|+.. +..+.. ++|+++|+++|+++++|+||||++|++++ + ++.||++..|++++| |||+||+..
T Consensus 82 ~~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dliV~G~~~~~~~------~-~~~Gs~~~~vl~~~~--~pVlvv~~~ 148 (150)
T 3tnj_A 82 TLGIDPAHRWLVW-GEPREEIIRIAEQENVDLIVVGSHGRHGL------A-LLLGSTANSVLHYAK--CDVLAVRLR 148 (150)
T ss_dssp HHTCCGGGEEEEE-SCHHHHHHHHHHHTTCSEEEEEEC---------------CCCHHHHHHHHCS--SEEEEEECC
T ss_pred HcCCCcceEEEec-CCHHHHHHHHHHHcCCCEEEEecCCCCCc------C-eEecchHHHHHHhCC--CCEEEEeCC
Confidence 447774 555554 58999999999999999999999999987 4 445899999999999 999999854
No 12
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=99.85 E-value=3.2e-21 Score=166.30 Aligned_cols=137 Identities=11% Similarity=0.173 Sum_probs=102.9
Q ss_pred CEEEEccCCCHH--HHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 044284 19 KIVAVAIDKDKF--SQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRR 96 (421)
Q Consensus 19 ~~IlVAVDgS~~--S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~ 96 (421)
++||||+|+|+. |.+|++||++++...+++|+++||.++............ ......++..++.+..+..++.+.
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~ 78 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEARIDDAEVHFLTVIPSLPYYASLGMAYT---AELPGMDELREGSETQLKEIAKKF 78 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHHHHHTCEEEEEEEECC-------------------CHHHHHHHHHHHHHHHHTTS
T ss_pred CEEEEEecCChHhhHHHHHHHHHHHHHhcCCeEEEEEEecCCccccccccccc---chhhhHHHHHHHHHHHHHHHHHHc
Confidence 689999999999 999999999999988999999999987542110000000 011222344555666677777776
Q ss_pred CC---ceEEEEEEcCCHHHHHHHHHHHcCCCEEEEcCCCCCCCcccccccccccccccchhcccCCCcceEEEEe
Q 044284 97 HI---QCELVVLERQDVARALIEYVSQYGVETMLLGAPTKNGLSRSSFCRLFKASDTPGTVLKWAPDFCNVYIVS 168 (421)
Q Consensus 97 gV---~~e~vvleg~dva~aIve~A~~~~idlIVmGs~gr~~f~~~~~~r~~~~~sVa~~V~k~Ap~~C~V~VV~ 168 (421)
|+ .++..+..| +|+++|+++|+++++|+||||++| +++. +.|+ ||++..|++++| |||+||+
T Consensus 79 ~~~~~~v~~~~~~g-~~~~~I~~~a~~~~~dliV~G~~~-~~~~-----~~~~-Gs~~~~v~~~~~--~pVlvv~ 143 (143)
T 3fdx_A 79 SIPEDRMHFHVAEG-SPKDKILALAKSLPADLVIIASHR-PDIT-----TYLL-GSNAAAVVRHAE--CSVLVVR 143 (143)
T ss_dssp CCCGGGEEEEEEES-CHHHHHHHHHHHTTCSEEEEESSC-TTCC-----SCSS-CHHHHHHHHHCS--SEEEEEC
T ss_pred CCCCCceEEEEEec-ChHHHHHHHHHHhCCCEEEEeCCC-CCCe-----eeee-ccHHHHHHHhCC--CCEEEeC
Confidence 54 457666665 899999999999999999999995 8887 6665 799999999999 9999985
No 13
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=99.82 E-value=1.3e-20 Score=162.35 Aligned_cols=138 Identities=16% Similarity=0.132 Sum_probs=102.1
Q ss_pred CCCEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 044284 17 REKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRR 96 (421)
Q Consensus 17 ~~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~ 96 (421)
|+++||||+|+|+.|.+|++||++++...+++|+++||.++.+.. .++........+.+...+++++.|..+ +.+.
T Consensus 1 m~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~ 76 (141)
T 1jmv_A 1 MYKHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFSDL-YTGLIDVNMSSMQDRISTETQKALLDL---AESV 76 (141)
T ss_dssp CCSEEEEEECCSTTHHHHHHHHHHHHHHHTCEEEEEEEEECCGGG-CCCCEEHHHHHHTTCCCCHHHHHHHHH---HHHS
T ss_pred CCceEEEEecCchhhHHHHHHHHHHHHhcCCEEEEEEEecCchhh-hccccccchHHHHHHHHHHHHHHHHHH---HHHc
Confidence 578999999999999999999999999889999999998542110 011111111112121223445555554 3455
Q ss_pred CCce-EEEEEEcCCHHHHHHHHHHHcCCCEEEEcCCCCCCCcccccccccccccccchhcccCCCcceEEEEeCC
Q 044284 97 HIQC-ELVVLERQDVARALIEYVSQYGVETMLLGAPTKNGLSRSSFCRLFKASDTPGTVLKWAPDFCNVYIVSKG 170 (421)
Q Consensus 97 gV~~-e~vvleg~dva~aIve~A~~~~idlIVmGs~gr~~f~~~~~~r~~~~~sVa~~V~k~Ap~~C~V~VV~kg 170 (421)
|+.+ +.++. .++|+++|+++|+++++|+||||++ ++++. + | ||++..|++++| |||+||+.+
T Consensus 77 ~~~~~~~~~~-~g~~~~~I~~~a~~~~~dliV~G~~-~~~~~-----~-l--gs~~~~vl~~~~--~pVlvv~~~ 139 (141)
T 1jmv_A 77 DYPISEKLSG-SGDLGQVLSDAIEQYDVDLLVTGHH-QDFWS-----K-L--MSSTRQVMNTIK--IDMLVVPLR 139 (141)
T ss_dssp SSCCCCEEEE-EECHHHHHHHHHHHTTCCEEEEEEC-CCCHH-----H-H--HHHHHHHHTTCC--SEEEEEECC
T ss_pred CCCceEEEEe-cCCHHHHHHHHHHhcCCCEEEEeCC-Cchhh-----h-h--cchHHHHHhcCC--CCEEEeeCC
Confidence 7776 34444 4589999999999999999999999 98886 5 4 599999999999 999999864
No 14
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.80 E-value=2.3e-19 Score=174.85 Aligned_cols=146 Identities=17% Similarity=0.102 Sum_probs=118.0
Q ss_pred CCCEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 044284 17 REKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRR 96 (421)
Q Consensus 17 ~~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~ 96 (421)
++++||||+|+|+.|..|++||+.++...+++|+++||.++................+.+...+++++.|..+...+...
T Consensus 6 ~~k~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 85 (319)
T 3olq_A 6 KYQNLLVVIDPNQDDQPALRRAVYIVQRNGGRIKAFLPVYDLSYDMTTLLSPDERNAMRKGVINQKTAWIKQQARYYLEA 85 (319)
T ss_dssp CSCEEEEECCTTCSCCHHHHHHHHHHHHHCCEEEEEEEECCGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccceEEEEECCCcccHHHHHHHHHHHHHcCCeEEEEEEecccchhhccccChhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 47899999999999999999999999999999999999865432111001112233444555667788889888888888
Q ss_pred CCceEEEEEEcCCHHHHHHHHHHHcCCCEEEEcCCCCCCCcccccccccccccccchhcccCCCcceEEEEeCC
Q 044284 97 HIQCELVVLERQDVARALIEYVSQYGVETMLLGAPTKNGLSRSSFCRLFKASDTPGTVLKWAPDFCNVYIVSKG 170 (421)
Q Consensus 97 gV~~e~vvleg~dva~aIve~A~~~~idlIVmGs~gr~~f~~~~~~r~~~~~sVa~~V~k~Ap~~C~V~VV~kg 170 (421)
|+.++..+...++++++|++++.+.++|+||||++|++++. +.|+ |+++..|+++++ |||+||+.+
T Consensus 86 ~v~~~~~~~~~g~~~~~i~~~a~~~~~DLiV~G~~g~~~~~-----~~~~-Gs~~~~vl~~~~--~PVlvv~~~ 151 (319)
T 3olq_A 86 GIQIDIKVIWHNRPYEAIIEEVITDKHDLLIKMAHQHDKLG-----SLIF-TPLDWQLLRKCP--APVWMVKDK 151 (319)
T ss_dssp TCCEEEEEEECSCHHHHHHHHHHHHTCSEEEEEEBCC--CC-----SCBC-CHHHHHHHHHCS--SCEEEEESS
T ss_pred CCeEEEEEEecCChHHHHHHHHHhcCCCEEEEecCcCchhh-----cccc-cccHHHHHhcCC--CCEEEecCc
Confidence 99999887746789999999999999999999999999998 6665 799999999999 999999865
No 15
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=99.78 E-value=2.4e-19 Score=153.99 Aligned_cols=133 Identities=10% Similarity=0.037 Sum_probs=101.4
Q ss_pred CCCCEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEe-cC-CCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHh
Q 044284 16 GREKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVI-QK-SHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYC 93 (421)
Q Consensus 16 ~~~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~-~~-~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c 93 (421)
.++++||||+|+|+.|.+|++||++++...+++|++|||. +. +...............+.+...+++++.|..+ ..|
T Consensus 2 ~~~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~ 80 (138)
T 1q77_A 2 NAMKVLLVLTDAYSDCEKAITYAVNFSEKLGAELDILAVLEDVYNLERANVTFGLPFPPEIKEESKKRIERRLREV-WEK 80 (138)
T ss_dssp CCCEEEEEEESTTCCCHHHHHHHHHHHTTTCCEEEEEEECHHHHHHHHHHHHHCCCCCTHHHHHHHHHHHHHHHHH-HHH
T ss_pred CcccEEEEEccCCHhHHHHHHHHHHHHHHcCCeEEEEEEecccccccccccccCCCCChHHHHHHHHHHHHHHHHH-HHH
Confidence 3688999999999999999999999999889999999998 63 10000000000000234455566777888888 764
Q ss_pred --hhcCCceEEEEEEcCCHHHHHHHHHHHcCCCEEEEcCCCCCCCcccccccccccccccchhcccCCCcceEEEEe
Q 044284 94 --TRRHIQCELVVLERQDVARALIEYVSQYGVETMLLGAPTKNGLSRSSFCRLFKASDTPGTVLKWAPDFCNVYIVS 168 (421)
Q Consensus 94 --~~~gV~~e~vvleg~dva~aIve~A~~~~idlIVmGs~gr~~f~~~~~~r~~~~~sVa~~V~k~Ap~~C~V~VV~ 168 (421)
...| .++..+.. ++|+++|+++|+++++|+||||++|+ ||+..|+++++ |||+||+
T Consensus 81 ~~~~~~-~~~~~~~~-g~~~~~I~~~a~~~~~dliV~G~~g~---------------sv~~~vl~~a~--~PVlvv~ 138 (138)
T 1q77_A 81 LTGSTE-IPGVEYRI-GPLSEEVKKFVEGKGYELVVWACYPS---------------AYLCKVIDGLN--LASLIVK 138 (138)
T ss_dssp HHSCCC-CCCEEEEC-SCHHHHHHHHHTTSCCSEEEECSCCG---------------GGTHHHHHHSS--SEEEECC
T ss_pred hhccCC-cceEEEEc-CCHHHHHHHHHHhcCCCEEEEeCCCC---------------chHHHHHHhCC--CceEeeC
Confidence 4556 77766555 58999999999999999999999963 78999999999 9999985
No 16
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.77 E-value=6.9e-19 Score=167.52 Aligned_cols=141 Identities=14% Similarity=0.094 Sum_probs=112.3
Q ss_pred CEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCc--cccc--cchH----HHHHHHHHHHHHHHHHHHH
Q 044284 19 KIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQ--YSVG--ISEE----LIEQQQHDIHAMEVFLPFR 90 (421)
Q Consensus 19 ~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~--~~~~--~~~~----~~~~~~~~~~a~elL~~~r 90 (421)
++||||+|+|+.|.+|++||++++...+++|+++||.++...... .+.. .... ..+.+...+.+++.|..+.
T Consensus 1 k~ILv~vD~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 80 (268)
T 3ab8_A 1 MRILLATDGSPQARGAEALAEWLAYKLSAPLTVLFVVDTRLARIPELLDFGALTVPVPVLRTELERALALRGEAVLERVR 80 (268)
T ss_dssp CCEEEECCSCGGGHHHHHHHHHHHHHHTCCEEEEEEEEHHHHTHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHHhCCcEEEEEEeccCCcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999999988999999999875321000 0000 0000 1113445567888999999
Q ss_pred HHhhhcCCceEEEEEEcCCHHHHHHHHHHHcCCCEEEEcCCCCC-CCcccccccccccccccchhcccCCCcceEEEEeC
Q 044284 91 CYCTRRHIQCELVVLERQDVARALIEYVSQYGVETMLLGAPTKN-GLSRSSFCRLFKASDTPGTVLKWAPDFCNVYIVSK 169 (421)
Q Consensus 91 ~~c~~~gV~~e~vvleg~dva~aIve~A~~~~idlIVmGs~gr~-~f~~~~~~r~~~~~sVa~~V~k~Ap~~C~V~VV~k 169 (421)
..+...|++++..+..| +|+++|+++ +.++|+||||++|++ ++. +.++ ||++..|+++++ |||+||+.
T Consensus 81 ~~~~~~g~~~~~~~~~g-~~~~~I~~~--~~~~dliV~G~~g~~~~~~-----~~~~-Gs~~~~v~~~a~--~PVlvv~~ 149 (268)
T 3ab8_A 81 QSALAAGVAVEAVLEEG-VPHEAILRR--ARAADLLVLGRSGEAHGDG-----FGGL-GSTADRVLRASP--VPVLLAPG 149 (268)
T ss_dssp HHHHHTTCCEEEEEEEE-CHHHHHHHH--HTTCSEEEEESSCTTSCTT-----CCSC-CHHHHHHHHHCS--SCEEEECS
T ss_pred HHHHhCCCCeEEEEecC-CHHHHHHhh--ccCCCEEEEeccCCCcccc-----cccc-chhHHHHHHhCC--CCEEEECC
Confidence 99988999999887765 799999999 889999999999999 887 6665 799999999999 99999986
Q ss_pred C
Q 044284 170 G 170 (421)
Q Consensus 170 g 170 (421)
+
T Consensus 150 ~ 150 (268)
T 3ab8_A 150 E 150 (268)
T ss_dssp S
T ss_pred C
Confidence 4
No 17
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.77 E-value=2.1e-18 Score=166.62 Aligned_cols=136 Identities=12% Similarity=0.086 Sum_probs=104.3
Q ss_pred CCCEEEEccCCCHH-------HHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHH
Q 044284 17 REKIVAVAIDKDKF-------SQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPF 89 (421)
Q Consensus 17 ~~~~IlVAVDgS~~-------S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~ 89 (421)
++++||||+|+|+. |.+|++||++++...+++|+++||.++..... ..... .+.+..++++++.|..
T Consensus 133 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~----~~~~~-~~~~~~~~~~~~~l~~- 206 (290)
T 3mt0_A 133 TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAKATLHVISAHPSPMLSS----ADPTF-QLSETIEARYREACRT- 206 (290)
T ss_dssp TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEC-------------CH-HHHHHHHHHHHHHHHH-
T ss_pred CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHcCCeEEEEEEecCccccc----cCchh-HHHHHHHHHHHHHHHH-
Confidence 68999999999998 99999999999998899999999998653211 00111 2334444455555555
Q ss_pred HHHhhhcCCc-eEEEEEEcCCHHHHHHHHHHHcCCCEEEEcCCCCCCCcccccccccccccccchhcccCCCcceEEEEe
Q 044284 90 RCYCTRRHIQ-CELVVLERQDVARALIEYVSQYGVETMLLGAPTKNGLSRSSFCRLFKASDTPGTVLKWAPDFCNVYIVS 168 (421)
Q Consensus 90 r~~c~~~gV~-~e~vvleg~dva~aIve~A~~~~idlIVmGs~gr~~f~~~~~~r~~~~~sVa~~V~k~Ap~~C~V~VV~ 168 (421)
++.+.|+. +...+.. ++|+++|+++|+++++|+||||++|++++. +.|+ |||+..|++++| |||+||+
T Consensus 207 --~~~~~g~~~~~~~v~~-g~~~~~I~~~a~~~~~dLiVmG~~g~~~~~-----~~~~-Gsv~~~vl~~~~--~pVLvv~ 275 (290)
T 3mt0_A 207 --FQAEYGFSDEQLHIEE-GPADVLIPRTAQKLDAVVTVIGTVARTGLS-----GALI-GNTAEVVLDTLE--SDVLVLK 275 (290)
T ss_dssp --HHHHHTCCTTTEEEEE-SCHHHHHHHHHHHHTCSEEEEECCSSCCGG-----GCCS-CHHHHHHHTTCS--SEEEEEC
T ss_pred --HHHHcCCCcceEEEec-cCHHHHHHHHHHhcCCCEEEECCCCCcCCc-----ceec-chHHHHHHhcCC--CCEEEEC
Confidence 34455774 4455555 589999999999999999999999999998 6675 799999999999 9999997
Q ss_pred C
Q 044284 169 K 169 (421)
Q Consensus 169 k 169 (421)
.
T Consensus 276 ~ 276 (290)
T 3mt0_A 276 P 276 (290)
T ss_dssp C
T ss_pred C
Confidence 4
No 18
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.77 E-value=3.8e-19 Score=171.98 Aligned_cols=143 Identities=14% Similarity=0.106 Sum_probs=118.0
Q ss_pred CCCEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 044284 17 REKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRR 96 (421)
Q Consensus 17 ~~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~ 96 (421)
++++||||+|+|+.|..|++||+.++...+++|++|||.++....... .......+.+..++++++.|..+...+...
T Consensus 21 m~~~ILv~vD~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 98 (294)
T 3loq_A 21 QSNAMLLPTDLSENSFKVLEYLGDFKKVGVEEIGVLFVINLTKLSTVS--GGIDIDHYIDEMSEKAEEVLPEVAQKIEAA 98 (294)
T ss_dssp TTCEEEEECCSCTGGGGGGGGHHHHHHTTCCEEEEECCEECTTC-------CCCTTHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhccEEEecCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCccccccc--ccccHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 478999999999999999999999999999999999999875432111 111233455666678889999999999999
Q ss_pred CCceEE-EEEEcCCHHHHHHHHHHHcCCCEEEEcCCCCCCCcccccccccccccccchhcccCCCcceEEEEeCCc
Q 044284 97 HIQCEL-VVLERQDVARALIEYVSQYGVETMLLGAPTKNGLSRSSFCRLFKASDTPGTVLKWAPDFCNVYIVSKGK 171 (421)
Q Consensus 97 gV~~e~-vvleg~dva~aIve~A~~~~idlIVmGs~gr~~f~~~~~~r~~~~~sVa~~V~k~Ap~~C~V~VV~kgk 171 (421)
|++++. .+...++++++| ++.+.++|+||||++|++++. +.++ ||++..|++.++ |||+||+.+.
T Consensus 99 g~~~~~~~v~~~g~~~~~I--~a~~~~~DliV~G~~g~~~~~-----~~~~-Gs~~~~vl~~~~--~PVlvv~~~~ 164 (294)
T 3loq_A 99 GIKAEVIKPFPAGDPVVEI--IKASENYSFIAMGSRGASKFK-----KILL-GSVSEGVLHDSK--VPVYIFKHDM 164 (294)
T ss_dssp TCEEEECSSCCEECHHHHH--HHHHTTSSEEEEECCCCCHHH-----HHHH-CCHHHHHHHHCS--SCEEEECCCT
T ss_pred CCCcceeEeeccCChhHhe--eeccCCCCEEEEcCCCCcccc-----ceee-ccHHHHHHhcCC--CCEEEecCcc
Confidence 999987 556245899999 999999999999999999987 6665 799999999999 9999998653
No 19
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.76 E-value=3.6e-18 Score=166.51 Aligned_cols=143 Identities=15% Similarity=0.165 Sum_probs=114.7
Q ss_pred CCCCCEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhh
Q 044284 15 EGREKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCT 94 (421)
Q Consensus 15 ~~~~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~ 94 (421)
..++++||||+|+|+.|..|++||+.++...+++|++|||.++... ..+... ....+.+...+.+++.|..+...+.
T Consensus 16 ~~~~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~ 92 (309)
T 3cis_A 16 GNSSLGIIVGIDDSPAAQVAVRWAARDAELRKIPLTLVHAVSPEVA-TWLEVP--LPPGVLRWQQDHGRHLIDDALKVVE 92 (309)
T ss_dssp --CTTEEEEECCSSHHHHHHHHHHHHHHHHHTCCEEEEEECCCCCC-CTTCCC--CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCHHHHHHHHHHHHHHHhcCCcEEEEEEecCccc-ccccCC--CCchhhHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999988999999999874321 111111 1123444556677888888888887
Q ss_pred hc-----CCceEEEEEEcCCHHHHHHHHHHHcCCCEEEEcCCCCCCCcccccccccccccccchhcccCCCcceEEEEeC
Q 044284 95 RR-----HIQCELVVLERQDVARALIEYVSQYGVETMLLGAPTKNGLSRSSFCRLFKASDTPGTVLKWAPDFCNVYIVSK 169 (421)
Q Consensus 95 ~~-----gV~~e~vvleg~dva~aIve~A~~~~idlIVmGs~gr~~f~~~~~~r~~~~~sVa~~V~k~Ap~~C~V~VV~k 169 (421)
.. |+.++..+.. ++++++|++++. ++|+||||++|++++. +.|+ ||++..|+++++ |||+||+.
T Consensus 93 ~~~~~~~~~~~~~~~~~-g~~~~~I~~~a~--~~DliV~G~~g~~~~~-----~~~~-Gs~~~~vl~~~~--~PVlvv~~ 161 (309)
T 3cis_A 93 QASLRAGPPTVHSEIVP-AAAVPTLVDMSK--DAVLMVVGCLGSGRWP-----GRLL-GSVSSGLLRHAH--CPVVIIHD 161 (309)
T ss_dssp HHCSSSCCSCEEEEEES-SCHHHHHHHHGG--GEEEEEEESSCTTCCT-----TCCS-CHHHHHHHHHCS--SCEEEECT
T ss_pred HhcccCCCceEEEEEec-CCHHHHHHHHhc--CCCEEEECCCCCcccc-----cccc-CcHHHHHHHhCC--CCEEEEcC
Confidence 76 8999887665 589999999997 8999999999999997 6665 799999999999 99999986
Q ss_pred Cc
Q 044284 170 GK 171 (421)
Q Consensus 170 gk 171 (421)
+.
T Consensus 162 ~~ 163 (309)
T 3cis_A 162 ED 163 (309)
T ss_dssp TC
T ss_pred Cc
Confidence 53
No 20
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.75 E-value=6.5e-18 Score=164.54 Aligned_cols=143 Identities=11% Similarity=0.118 Sum_probs=109.8
Q ss_pred CCCEEEEccCCCH-------HHHHHHHHHHHHHhcC--CCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHH
Q 044284 17 REKIVAVAIDKDK-------FSQHALKWAADNILSR--HQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFL 87 (421)
Q Consensus 17 ~~~~IlVAVDgS~-------~S~~ALkwAid~a~~~--ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~ 87 (421)
++++|+||+|+|+ .|.+|++||+.++... +++|++|||.++................+.++..+++++.|.
T Consensus 155 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 234 (319)
T 3olq_A 155 EYGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPINIAIELPDFDPNLYNNALRGQHLIAMK 234 (319)
T ss_dssp TTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSCCTTCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCcchhhhccCCcccHHHHHHHHHHHHHHHHH
Confidence 5789999999998 6899999999999887 999999999987543111111112334455555566666665
Q ss_pred HHHHHhhhcCCc-eEEEEEEcCCHHHHHHHHHHHcCCCEEEEcCCCCCCCcccccccccccccccchhcccCCCcceEEE
Q 044284 88 PFRCYCTRRHIQ-CELVVLERQDVARALIEYVSQYGVETMLLGAPTKNGLSRSSFCRLFKASDTPGTVLKWAPDFCNVYI 166 (421)
Q Consensus 88 ~~r~~c~~~gV~-~e~vvleg~dva~aIve~A~~~~idlIVmGs~gr~~f~~~~~~r~~~~~sVa~~V~k~Ap~~C~V~V 166 (421)
.+ +.+.|+. ++..+.. ++++++|+++|.++++|+||||++|+++|. +.|+ |||+..|+++++ |||+|
T Consensus 235 ~~---~~~~~~~~~~~~v~~-g~~~~~I~~~a~~~~~dLiV~G~~g~~~~~-----~~~~-Gsv~~~vl~~~~--~pVLv 302 (319)
T 3olq_A 235 EL---RQKFSIPEEKTHVKE-GLPEQVIPQVCEELNAGIVVLGILGRTGLS-----AAFL-GNTAEQLIDHIK--CDLLA 302 (319)
T ss_dssp HH---HHHTTCCGGGEEEEE-SCHHHHHHHHHHHTTEEEEEEECCSCCSTH-----HHHH-HHHHHHHHTTCC--SEEEE
T ss_pred HH---HHHhCCCcccEEEec-CCcHHHHHHHHHHhCCCEEEEeccCccCCc-----cccc-cHHHHHHHhhCC--CCEEE
Confidence 54 4455664 3444444 589999999999999999999999999998 6675 799999999999 99999
Q ss_pred EeCCc
Q 044284 167 VSKGK 171 (421)
Q Consensus 167 V~kgk 171 (421)
|+...
T Consensus 303 v~~~~ 307 (319)
T 3olq_A 303 IKPDG 307 (319)
T ss_dssp ECCTT
T ss_pred ECCCC
Confidence 97543
No 21
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.74 E-value=4.8e-18 Score=164.17 Aligned_cols=124 Identities=14% Similarity=0.139 Sum_probs=106.5
Q ss_pred CCCEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 044284 17 REKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRR 96 (421)
Q Consensus 17 ~~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~ 96 (421)
++++||||+|+|+.+..|++||+.++...+++|+++||.++ +++++.|..+...+...
T Consensus 6 ~~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~----------------------~~~~~~l~~~~~~~~~~ 63 (290)
T 3mt0_A 6 AIRSILVVIEPDQLEGLALKRAQLIAGVTQSHLHLLVCEKR----------------------RDHSAALNDLAQELREE 63 (290)
T ss_dssp TCCEEEEECCSSCSCCHHHHHHHHHHHHHCCEEEEEEECSS----------------------SCCHHHHHHHHHHHHHT
T ss_pred hhceEEEEeCCCccchHHHHHHHHHHHhcCCeEEEEEeeCc----------------------HHHHHHHHHHHHHHhhC
Confidence 47899999999999999999999999999999999999873 11223344455555678
Q ss_pred CCceEEEEEEcCCHHHHHHHHHHHcCCCEEEEcCCCCCCCcccccccccccccccchhcccCCCcceEEEEeCC
Q 044284 97 HIQCELVVLERQDVARALIEYVSQYGVETMLLGAPTKNGLSRSSFCRLFKASDTPGTVLKWAPDFCNVYIVSKG 170 (421)
Q Consensus 97 gV~~e~vvleg~dva~aIve~A~~~~idlIVmGs~gr~~f~~~~~~r~~~~~sVa~~V~k~Ap~~C~V~VV~kg 170 (421)
|+.++..+..+++++++|++++.+.++|+||||++|++++. +.++ |+++..|++.++ |||+||+.+
T Consensus 64 ~~~~~~~~~~~g~~~~~i~~~a~~~~~dliV~G~~~~~~~~-----~~~~-gs~~~~vl~~~~--~PVlvv~~~ 129 (290)
T 3mt0_A 64 GYSVSTNQAWKDSLHQTIIAEQQAEGCGLIIKQHFPDNPLK-----KAIL-TPDDWKLLRFAP--CPVLMTKTA 129 (290)
T ss_dssp TCCEEEEEECSSSHHHHHHHHHHHHTCSEEEEECCCSCTTS-----TTSC-CHHHHHHHHHCS--SCEEEECCC
T ss_pred CCeEEEEEEeCCCHHHHHHHHHHhcCCCEEEEecccCCchh-----hccc-CHHHHHHHhcCC--CCEEEecCC
Confidence 99999888777899999999999999999999999999987 6665 799999999999 999999843
No 22
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.72 E-value=2e-17 Score=159.86 Aligned_cols=124 Identities=15% Similarity=0.254 Sum_probs=106.9
Q ss_pred CCCCEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhh
Q 044284 16 GREKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTR 95 (421)
Q Consensus 16 ~~~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~ 95 (421)
.++++|+||+|+++.+.+|++||+.++...+++|++|||.++.. .++.+..+...+.+
T Consensus 168 ~~~~~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~----------------------~~~~l~~~~~~l~~ 225 (294)
T 3loq_A 168 SLFDRVLVAYDFSKWADRALEYAKFVVKKTGGELHIIHVSEDGD----------------------KTADLRVMEEVIGA 225 (294)
T ss_dssp CTTSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEECSSSC----------------------CHHHHHHHHHHHHH
T ss_pred ccCCEEEEEECCCHHHHHHHHHHHHHhhhcCCEEEEEEEccCch----------------------HHHHHHHHHHHHHH
Confidence 45789999999999999999999999988899999999987531 22345556666667
Q ss_pred cCCceEEEEEEcCCHHHHHHHHHHHcCCCEEEEcCCCCCCCcccccccccccccccchhcccCCCcceEEEEeCC
Q 044284 96 RHIQCELVVLERQDVARALIEYVSQYGVETMLLGAPTKNGLSRSSFCRLFKASDTPGTVLKWAPDFCNVYIVSKG 170 (421)
Q Consensus 96 ~gV~~e~vvleg~dva~aIve~A~~~~idlIVmGs~gr~~f~~~~~~r~~~~~sVa~~V~k~Ap~~C~V~VV~kg 170 (421)
.|++++..+.. ++++++|++++.+.++|+||||++|+++|. +.|+ ||++..|+++++ |||+||+.+
T Consensus 226 ~~~~~~~~~~~-g~~~~~I~~~a~~~~~dLlV~G~~~~~~~~-----~~~~-Gs~~~~vl~~~~--~pvLvv~~~ 291 (294)
T 3loq_A 226 EGIEVHVHIES-GTPHKAILAKREEINATTIFMGSRGAGSVM-----TMIL-GSTSESVIRRSP--VPVFVCKRG 291 (294)
T ss_dssp TTCCEEEEEEC-SCHHHHHHHHHHHTTCSEEEEECCCCSCHH-----HHHH-HCHHHHHHHHCS--SCEEEECSC
T ss_pred cCCcEEEEEec-CCHHHHHHHHHHhcCcCEEEEeCCCCCCcc-----ceee-CcHHHHHHhcCC--CCEEEECCC
Confidence 89998876665 489999999999999999999999999998 6665 799999999999 999999865
No 23
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.72 E-value=5.2e-17 Score=158.27 Aligned_cols=135 Identities=16% Similarity=0.149 Sum_probs=104.0
Q ss_pred CCCEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhh-
Q 044284 17 REKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTR- 95 (421)
Q Consensus 17 ~~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~- 95 (421)
.+++|+||+|+|+.|.+|++||++++...+++|++|||.++......+ ....... .+++++.+..+...+..
T Consensus 170 ~~~~Ilv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~---~~~~~~~----~~~~~~~l~~~~~~~~~~ 242 (309)
T 3cis_A 170 QQAPVLVGVDGSSASELATAIAFDEASRRNVDLVALHAWSDVDVSEWP---GIDWPAT----QSMAEQVLAERLAGWQER 242 (309)
T ss_dssp CCCCEEEECCSSHHHHHHHHHHHHHHHHTTCCEEEEEESCSSCCTTCS---SCCHHHH----HHHHHHHHHHHHTTHHHH
T ss_pred CCCeEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEEEeecccccCCC---cccHHHH----HHHHHHHHHHHHHHHHhh
Confidence 468999999999999999999999998889999999998764321111 1111222 23344444444433332
Q ss_pred -cCCceEEEEEEcCCHHHHHHHHHHHcCCCEEEEcCCCCCCCcccccccccccccccchhcccCCCcceEEEEeC
Q 044284 96 -RHIQCELVVLERQDVARALIEYVSQYGVETMLLGAPTKNGLSRSSFCRLFKASDTPGTVLKWAPDFCNVYIVSK 169 (421)
Q Consensus 96 -~gV~~e~vvleg~dva~aIve~A~~~~idlIVmGs~gr~~f~~~~~~r~~~~~sVa~~V~k~Ap~~C~V~VV~k 169 (421)
.|+.++..+.. ++|+++|++++. ++|+||||++|+++|. +.|+ |||+..|+++++ |||+||+.
T Consensus 243 ~~~~~~~~~~~~-g~~~~~I~~~a~--~adliV~G~~~~~~~~-----~~l~-Gsv~~~vl~~~~--~pVlvv~~ 306 (309)
T 3cis_A 243 YPNVAITRVVVR-DQPARQLVQRSE--EAQLVVVGSRGRGGYA-----GMLV-GSVGETVAQLAR--TPVIVARE 306 (309)
T ss_dssp CTTSCEEEEEES-SCHHHHHHHHHT--TCSEEEEESSCSSCCT-----TCSS-CHHHHHHHHHCS--SCEEEECC
T ss_pred CCCCcEEEEEEc-CCHHHHHHHhhC--CCCEEEECCCCCCCcc-----cccc-CcHHHHHHhcCC--CCEEEeCC
Confidence 48888877665 589999999998 8999999999999998 7775 799999999999 99999974
No 24
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.59 E-value=4.2e-15 Score=141.31 Aligned_cols=116 Identities=20% Similarity=0.172 Sum_probs=97.1
Q ss_pred CCCEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 044284 17 REKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRR 96 (421)
Q Consensus 17 ~~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~ 96 (421)
++++|+||+|+|+.+.+|++||.+++...+++|+++||.++. +..++.+..+...+.+.
T Consensus 153 ~~~~ilv~~d~s~~~~~al~~a~~la~~~~a~l~ll~v~~~~---------------------~~~~~~l~~~~~~l~~~ 211 (268)
T 3ab8_A 153 ELEGALLGYDASESAVRALHALAPLARALGLGVRVVSVHEDP---------------------ARAEAWALEAEAYLRDH 211 (268)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHHHHHHTCCEEEEEECSSH---------------------HHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHhhhcCCCEEEEEEEcCcH---------------------HHHHHHHHHHHHHHHHc
Confidence 568999999999999999999999998889999999997542 12334456666667778
Q ss_pred CCceEEEEEEcCCHHHHHHHHHHHcCCCEEEEcCCCCCCCcccccccccccccccchhcccCCCcceEEEEe
Q 044284 97 HIQCELVVLERQDVARALIEYVSQYGVETMLLGAPTKNGLSRSSFCRLFKASDTPGTVLKWAPDFCNVYIVS 168 (421)
Q Consensus 97 gV~~e~vvleg~dva~aIve~A~~~~idlIVmGs~gr~~f~~~~~~r~~~~~sVa~~V~k~Ap~~C~V~VV~ 168 (421)
|++++..+.. ++++++|+++++++ |+||||+ +|. +.|+ |||+..|+++++ |||+||+
T Consensus 212 ~~~~~~~~~~-g~~~~~i~~~a~~~--dliV~G~----~~~-----~~~~-Gs~~~~vl~~~~--~pvlvv~ 268 (268)
T 3ab8_A 212 GVEASALVLG-GDAADHLLRLQGPG--DLLALGA----PVR-----RLVF-GSTAERVIRNAQ--GPVLTAR 268 (268)
T ss_dssp TCCEEEEEEC-SCHHHHHHHHCCTT--EEEEEEC----CCS-----CCSS-CCHHHHHHHHCS--SCEEEEC
T ss_pred CCceEEEEeC-CChHHHHHHHHHhC--CEEEECC----ccc-----ccEe-ccHHHHHHhcCC--CCEEEeC
Confidence 9998876665 58999999999998 9999999 566 5665 799999999999 9999985
No 25
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=95.23 E-value=0.09 Score=54.19 Aligned_cols=96 Identities=16% Similarity=0.122 Sum_probs=68.6
Q ss_pred CCEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 044284 18 EKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRH 97 (421)
Q Consensus 18 ~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~g 97 (421)
..+|+||+.|...|.-++.++.+.....|-.++++||.+.... .++.+-....+.+|...|
T Consensus 18 ~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvdhglrg-------------------~~s~~~~~~v~~~~~~lg 78 (464)
T 3a2k_A 18 GAAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHMFRG-------------------RESEEEMEFVKRFCVERR 78 (464)
T ss_dssp SSBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEECTTCT-------------------HHHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEECCCCc-------------------cccHHHHHHHHHHHHHcC
Confidence 4689999999999998888877766556788999999865320 011122345678888899
Q ss_pred CceEEEEEEcC--------CH--------HHHHHHHHHHcCCCEEEEcCCC
Q 044284 98 IQCELVVLERQ--------DV--------ARALIEYVSQYGVETMLLGAPT 132 (421)
Q Consensus 98 V~~e~vvleg~--------dv--------a~aIve~A~~~~idlIVmGs~g 132 (421)
|++..+-+... .+ -..+.++|.+++++.|++|.|.
T Consensus 79 i~~~v~~~~~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~IatgH~~ 129 (464)
T 3a2k_A 79 ILCETAQIDVPAFQRSAGLGAQEAARICRYRFFAELMEKHQAGYVAVGHHG 129 (464)
T ss_dssp CEEEEEECCCHHHHTTTTCCSHHHHHHHHHHHHHHHHHTTTCCEEECCCCH
T ss_pred CcEEEEEechhhhhhccCCCHHHHHHHHHHHHHHHHHHHcCcCEEEEeCCh
Confidence 98876655310 11 1355678889999999999884
No 26
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=94.79 E-value=0.23 Score=48.31 Aligned_cols=96 Identities=11% Similarity=-0.015 Sum_probs=65.0
Q ss_pred CCCEEEEccCCCHHHHHHHHHHHHHHhcCCCE-EEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhh
Q 044284 17 REKIVAVAIDKDKFSQHALKWAADNILSRHQT-IKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTR 95 (421)
Q Consensus 17 ~~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~-I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~ 95 (421)
+..+|+||+.|...|.-++.++.+.....|.. |+++||-..... ...+-....+.+|..
T Consensus 23 ~~~~vlva~SGG~DS~~Ll~ll~~~~~~~g~~~v~av~vd~g~r~--------------------~s~~~~~~v~~~a~~ 82 (317)
T 1wy5_A 23 GERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHMLRE--------------------SAERDEEFCKEFAKE 82 (317)
T ss_dssp SCCEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECCSST--------------------HHHHHHHHHHHHHHH
T ss_pred CCCEEEEEecchHHHHHHHHHHHHHHHHcCCCEEEEEEEECCCCc--------------------ccHHHHHHHHHHHHH
Confidence 35789999999999988887766654444667 999999754310 111123445667888
Q ss_pred cCCceEEEEEEc--------CCHH--------HHHHHHHHHcCCCEEEEcCCC
Q 044284 96 RHIQCELVVLER--------QDVA--------RALIEYVSQYGVETMLLGAPT 132 (421)
Q Consensus 96 ~gV~~e~vvleg--------~dva--------~aIve~A~~~~idlIVmGs~g 132 (421)
.||++..+-+.. .++- ..+.+++.+++++.|++|.|.
T Consensus 83 lgi~~~v~~~~~~~~~~~~~~~~e~~ar~~Ry~~l~~~a~~~g~~~i~~Gh~~ 135 (317)
T 1wy5_A 83 RNMKIFVGKEDVRAFAKENRMSLEEAGRFLRYKFLKEILESEGFDCIATAHHL 135 (317)
T ss_dssp HTCCEEEEECCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTTCSEEECCCCH
T ss_pred cCCcEEEEEEechhhhccCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeCch
Confidence 899887654421 1111 245567889999999999984
No 27
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=90.82 E-value=0.49 Score=48.24 Aligned_cols=93 Identities=13% Similarity=0.081 Sum_probs=59.9
Q ss_pred CCEEEEccCCCHHHHHHHHHHHHHHhc-CCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 044284 18 EKIVAVAIDKDKFSQHALKWAADNILS-RHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRR 96 (421)
Q Consensus 18 ~~~IlVAVDgS~~S~~ALkwAid~a~~-~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~ 96 (421)
..+|+||+.|...|.-++.++.+.... .|-.++++||.+.... .+.+-....+.+|...
T Consensus 13 ~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~g~~v~avhvdhglr~--------------------~s~~~~~~v~~~~~~l 72 (433)
T 1ni5_A 13 SRQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLSA--------------------NADAWVTHCENVCQQW 72 (433)
T ss_dssp CSEEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEECCSCCS--------------------SHHHHHHHHHHHHHHT
T ss_pred CCEEEEEEcchHHHHHHHHHHHHHHHhcCCCeEEEEEEECCCCc--------------------ccHHHHHHHHHHHHHc
Confidence 468999999999999888877776654 5788999999765321 0111134466788888
Q ss_pred CCceEEEEEEcC----CH---HH-----HHHHHHHHcCCCEEEEcCCC
Q 044284 97 HIQCELVVLERQ----DV---AR-----ALIEYVSQYGVETMLLGAPT 132 (421)
Q Consensus 97 gV~~e~vvleg~----dv---a~-----aIve~A~~~~idlIVmGs~g 132 (421)
||++..+-+... ++ +. .+.+++. +++.|++|.|.
T Consensus 73 gi~~~v~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~--~~~~i~tgH~~ 118 (433)
T 1ni5_A 73 QVPLVVERVQLAQEGLGIEAQARQARYQAFARTLL--PGEVLVTAQHL 118 (433)
T ss_dssp TCCEEEECCCCCCSSSTTTTHHHHHHHHHHHHTCC--TTEEEECCCCH
T ss_pred CCcEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHh--hCCeEEeeccc
Confidence 998876544321 11 11 1122222 47888888874
No 28
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=89.02 E-value=1.2 Score=46.00 Aligned_cols=37 Identities=11% Similarity=0.065 Sum_probs=31.5
Q ss_pred CCEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCC
Q 044284 18 EKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKS 58 (421)
Q Consensus 18 ~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~ 58 (421)
..+|+||+.|...|--++.|+.+. |..|+.+|+....
T Consensus 10 ~~KVvVA~SGGlDSSvll~~L~e~----G~eViavtvd~Gq 46 (455)
T 1k92_A 10 GQRIGIAFSGGLDTSAALLWMRQK----GAVPYAYTANLGQ 46 (455)
T ss_dssp TSEEEEECCSSHHHHHHHHHHHHT----TCEEEEEEEECCC
T ss_pred CCeEEEEEcChHHHHHHHHHHHHc----CCEEEEEEEEcCC
Confidence 468999999999999999998763 7899999997553
No 29
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=86.16 E-value=5 Score=35.85 Aligned_cols=89 Identities=16% Similarity=0.173 Sum_probs=58.1
Q ss_pred CEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 044284 19 KIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRHI 98 (421)
Q Consensus 19 ~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~gV 98 (421)
.+|+|++.|...|--++.++.+. +..++.+|+...... . . + ....+.+|...||
T Consensus 4 ~~v~v~lSGG~DS~~ll~ll~~~----~~~v~~~~~~~~~~~--------~------~----e----~~~a~~~a~~lgi 57 (219)
T 3bl5_A 4 EKAIVVFSGGQDSTTCLLWALKE----FEEVETVTFHYNQRH--------S------Q----E----VEVAKSIAEKLGV 57 (219)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHH----CSEEEEEEEESSCTT--------C------H----H----HHHHHHHHHTTCC
T ss_pred CCEEEEccCcHHHHHHHHHHHHc----CCceEEEEEeCCCCC--------H------H----H----HHHHHHHHHHhCC
Confidence 57999999999999888877664 467899999864311 0 0 0 2234455666677
Q ss_pred ceEEEEEEc-C----------C--------------------HH-HHHHHHHHHcCCCEEEEcCCCC
Q 044284 99 QCELVVLER-Q----------D--------------------VA-RALIEYVSQYGVETMLLGAPTK 133 (421)
Q Consensus 99 ~~e~vvleg-~----------d--------------------va-~aIve~A~~~~idlIVmGs~gr 133 (421)
+...+-+.. . . .- ..+.++|.+++++.|+.|.++.
T Consensus 58 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~a~~~g~~~i~tG~~~d 124 (219)
T 3bl5_A 58 KNHLLDMSLLNQLAPNALTRNDIEIEVKDGELPSTFVPGRNLVFLSFASILAYQIGARHIITGVCET 124 (219)
T ss_dssp CEEEEECGGGGGGSTGGGC--------------CCCCTTHHHHHHHHHHHHHHHHTCSEEECCCCC-
T ss_pred CeEEEeChHHhhhcccccccccccccccccCCCCceeechHHHHHHHHHHHHHHcCCCEEEEecccc
Confidence 665543321 0 0 01 2336889999999999999854
No 30
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=83.82 E-value=6.8 Score=39.43 Aligned_cols=36 Identities=11% Similarity=0.098 Sum_probs=30.7
Q ss_pred CEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecC
Q 044284 19 KIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQK 57 (421)
Q Consensus 19 ~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~ 57 (421)
++|+|++.|...|--++.|+.+.+ |..++.+||-..
T Consensus 1 ~kVvva~SGG~DSsvll~ll~~~~---g~~V~av~vd~g 36 (400)
T 1kor_A 1 MKIVLAYSGGLDTSIILKWLKETY---RAEVIAFTADIG 36 (400)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHH---TCEEEEEEEESS
T ss_pred CcEEEEEeChHHHHHHHHHHHHhh---CCcEEEEEEeCC
Confidence 379999999999999999988764 678999999754
No 31
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=83.78 E-value=4.6 Score=40.95 Aligned_cols=35 Identities=11% Similarity=0.030 Sum_probs=29.9
Q ss_pred CEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecC
Q 044284 19 KIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQK 57 (421)
Q Consensus 19 ~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~ 57 (421)
.+|+|++.|...|--++.|+.+. |..|+.+||...
T Consensus 6 ~kVvvalSGGlDSsvll~lL~e~----G~eV~av~vd~g 40 (413)
T 2nz2_A 6 GSVVLAYSGGLDTSCILVWLKEQ----GYDVIAYLANIG 40 (413)
T ss_dssp EEEEEECCSSHHHHHHHHHHHHT----TEEEEEEEEESS
T ss_pred CeEEEEEcChHHHHHHHHHHHHc----CCEEEEEEEECC
Confidence 58999999999999999998763 778999999754
No 32
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=83.51 E-value=2.5 Score=41.36 Aligned_cols=98 Identities=12% Similarity=0.031 Sum_probs=63.1
Q ss_pred CCEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 044284 18 EKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRH 97 (421)
Q Consensus 18 ~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~g 97 (421)
+.+|+|++.|.+.|.-.|..+.+.+...+..|.+|||-+...+ . + .+.-...+|++.|
T Consensus 46 ~~~ivVa~SGGkDS~vLL~Ll~~~~~~~~~~i~vv~vDtg~~~---------------~----e---t~~~v~~~~~~~g 103 (325)
T 1zun_A 46 FDNPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTRWKF---------------Q----E---MYRFRDQMVEEMG 103 (325)
T ss_dssp CSSEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEECCSCCC---------------H----H---HHHHHHHHHHTTT
T ss_pred CCCEEEEEcChHHHHHHHHHHHHhccccCCCEEEEEEECCCCC---------------H----H---HHHHHHHHHHHcC
Confidence 4689999999999998888887776544567889999654321 0 1 1223345677778
Q ss_pred CceEEEEEEc-----CCHH-------------HHHHHHHHHcCCCEEEEcCCCCCCCc
Q 044284 98 IQCELVVLER-----QDVA-------------RALIEYVSQYGVETMLLGAPTKNGLS 137 (421)
Q Consensus 98 V~~e~vvleg-----~dva-------------~aIve~A~~~~idlIVmGs~gr~~f~ 137 (421)
|++..+.... ..+. ..+-+++.+++++.+++|.+.--...
T Consensus 104 i~l~v~~~~~~~~~G~~~~~~~~~~cc~~~K~~pL~~~l~e~g~~~i~tG~R~Des~~ 161 (325)
T 1zun_A 104 LDLITHINPDGVAQGINPFTHGSAKHTDIMKTEGLKQALDKHGFDAAFGGARRDEEKS 161 (325)
T ss_dssp CCEEEECC--------------CCHHHHHHTHHHHHHHHHHHTCSEEECCCCTTSSGG
T ss_pred CCEEEEeCchHHhcCCCccccChHHHHHHHHHHHHHHHHHHcCCCEEEEecccchhhh
Confidence 8776543221 0000 23556777889999999988654443
No 33
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC, protein binding; 2.40A {Homo sapiens}
Probab=82.88 E-value=25 Score=33.75 Aligned_cols=52 Identities=13% Similarity=0.125 Sum_probs=40.8
Q ss_pred CChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHhhhh
Q 044284 281 QNMEDVEDDVKRLKMELKQTMDMYNAACKEALAAKQKAVELEKWKMKEEKRL 332 (421)
Q Consensus 281 ~~~~~~eaEm~rLrlELk~tm~my~~AckEa~~Akqk~~eL~~~~~EE~~k~ 332 (421)
++...+-.||+|.|+++|++----...+-||..+=+||...-.-+.||=.|.
T Consensus 101 ~~L~~~~~e~ek~RK~~Ke~w~r~eKk~~dae~~l~KAK~~Y~~r~ee~eka 152 (279)
T 3qwe_A 101 QPLAAKRTEIEKWRKEFKEQWMKEQKRMNEAVQALRRAQLQYVQRSEDLRAR 152 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778899999999999999888888999999889877655555554433
No 34
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=81.61 E-value=3.3 Score=39.11 Aligned_cols=82 Identities=18% Similarity=0.136 Sum_probs=53.2
Q ss_pred CCHHHHHHHHHHHHHHhcCCC--EEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhcCCceEEEE
Q 044284 27 KDKFSQHALKWAADNILSRHQ--TIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRHIQCELVV 104 (421)
Q Consensus 27 gS~~S~~ALkwAid~a~~~ga--~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~gV~~e~vv 104 (421)
-++.+.+||..|+.+... |. +|++|.+-++. +++.+..+..+ |+.- .++
T Consensus 35 lnp~d~~Ale~A~~Lke~-g~~~~V~av~~G~~~-----------------------a~~~lr~ala~----GaD~-vi~ 85 (252)
T 1efp_B 35 MNPFDEIAVEEAIRLKEK-GQAEEIIAVSIGVKQ-----------------------AAETLRTALAM----GADR-AIL 85 (252)
T ss_dssp ECHHHHHHHHHHHHHHTT-TSCSEEEEEEEESGG-----------------------GHHHHHHHHHH----TCSE-EEE
T ss_pred CCHHHHHHHHHHHHHHhc-CCCceEEEEEeCChh-----------------------HHHHHHHHHhc----CCCE-EEE
Confidence 468899999999998755 65 88888776421 11223333222 3332 233
Q ss_pred EE-cC------C---HHHHHHHHHHHcCCCEEEEcCCCCCCCc
Q 044284 105 LE-RQ------D---VARALIEYVSQYGVETMLLGAPTKNGLS 137 (421)
Q Consensus 105 le-g~------d---va~aIve~A~~~~idlIVmGs~gr~~f~ 137 (421)
++ +. + .+.+|..++++.++|+|++|....++..
T Consensus 86 v~~d~~~~~~~~~~~~a~~La~~i~~~~~dlVl~G~~s~d~~~ 128 (252)
T 1efp_B 86 VVAADDVQQDIEPLAVAKILAAVARAEGTELIIAGKQAIDNDM 128 (252)
T ss_dssp EECCSSTTCCCCHHHHHHHHHHHHHHHTCSEEEEESCCTTTCC
T ss_pred EecChhhcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCch
Confidence 33 21 2 4668888999999999999999876554
No 35
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=81.39 E-value=4.1 Score=38.52 Aligned_cols=82 Identities=17% Similarity=0.111 Sum_probs=53.5
Q ss_pred CCHHHHHHHHHHHHHHhcCCC--EEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhcCCceEEEE
Q 044284 27 KDKFSQHALKWAADNILSRHQ--TIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRHIQCELVV 104 (421)
Q Consensus 27 gS~~S~~ALkwAid~a~~~ga--~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~gV~~e~vv 104 (421)
-++.+.+||..|+.+... |. +|++|.+-++. +++.+..+..+ |..- .++
T Consensus 38 lnp~d~~Ale~A~~Lke~-g~~~~V~av~~G~~~-----------------------a~~~lr~ala~----GaD~-vi~ 88 (255)
T 1efv_B 38 MNPFCEIAVEEAVRLKEK-KLVKEVIAVSCGPAQ-----------------------CQETIRTALAM----GADR-GIH 88 (255)
T ss_dssp ECHHHHHHHHHHHHHHHT-TSCSEEEEEEEESTT-----------------------HHHHHHHHHHH----TCSE-EEE
T ss_pred CCHHHHHHHHHHHHHHhc-CCCceEEEEEeCChh-----------------------HHHHHHHHHhc----CCCE-EEE
Confidence 468889999999998755 65 88888776432 12223333222 4332 233
Q ss_pred EE-c-----C-C---HHHHHHHHHHHcCCCEEEEcCCCCCCCc
Q 044284 105 LE-R-----Q-D---VARALIEYVSQYGVETMLLGAPTKNGLS 137 (421)
Q Consensus 105 le-g-----~-d---va~aIve~A~~~~idlIVmGs~gr~~f~ 137 (421)
++ + + | .+.+|.+++++.++|+|++|....++..
T Consensus 89 v~~d~~~~~~~~~~~~A~~La~~i~~~~~dlVl~G~~s~d~d~ 131 (255)
T 1efv_B 89 VEVPPAEAERLGPLQVARVLAKLAEKEKVDLVLLGKQAIDDDC 131 (255)
T ss_dssp EECCHHHHTTCCHHHHHHHHHHHHHHHTCSEEEEESCCTTTCC
T ss_pred EecChhhcccCCHHHHHHHHHHHHHhcCCCEEEEeCcccCCch
Confidence 33 1 1 2 4568888999999999999999876554
No 36
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=80.36 E-value=11 Score=34.31 Aligned_cols=35 Identities=14% Similarity=0.051 Sum_probs=28.9
Q ss_pred CEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecC
Q 044284 19 KIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQK 57 (421)
Q Consensus 19 ~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~ 57 (421)
.+|+|++.|...|--++.|+.+. +..|+.||+...
T Consensus 3 ~kvvv~lSGG~DS~~~l~ll~~~----~~~v~av~~~~g 37 (232)
T 2pg3_A 3 KRAVVVFSGGQDSTTCLIQALQD----YDDVHCITFDYG 37 (232)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHH----CSEEEEEEEESS
T ss_pred CCEEEEecCcHHHHHHHHHHHHc----CCCEEEEEEECC
Confidence 58999999999999998888764 357889998754
No 37
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=79.55 E-value=5 Score=40.47 Aligned_cols=36 Identities=19% Similarity=0.083 Sum_probs=29.9
Q ss_pred CCEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecC
Q 044284 18 EKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQK 57 (421)
Q Consensus 18 ~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~ 57 (421)
..+|+|++.|...|--|+.++.+ .|..++.|||..+
T Consensus 187 ~~kvlvalSGGvDS~vll~ll~~----~G~~v~av~v~~~ 222 (413)
T 2c5s_A 187 GGKVMVLLSGGIDSPVAAYLTMK----RGVSVEAVHFHSP 222 (413)
T ss_dssp TEEEEEECCSSSHHHHHHHHHHH----BTEEEEEEEEECT
T ss_pred CCeEEEEeCCCChHHHHHHHHHH----cCCcEEEEEEeCC
Confidence 57899999999998888877654 4788999999754
No 38
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=79.48 E-value=4.7 Score=36.38 Aligned_cols=91 Identities=5% Similarity=-0.018 Sum_probs=58.1
Q ss_pred CEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 044284 19 KIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRHI 98 (421)
Q Consensus 19 ~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~gV 98 (421)
.+|+|++.|.+.|.-.+..+.+.. ..|.++||-+...+ . +. ..-.+.+|+..||
T Consensus 45 ~~v~Va~SGGkDS~vLL~ll~~~~----~~v~~v~vd~g~~~---------------~----e~---~~~v~~~~~~~gi 98 (215)
T 1sur_A 45 GEYVLSSSFGIQAAVSLHLVNQIR----PDIPVILTDTGYLF---------------P----ET---YRFIDELTDKLKL 98 (215)
T ss_dssp SEEEEECCCCTTHHHHHHHHHHHS----TTCEEEEEECSCBC---------------H----HH---HHHHHHHHHHTTC
T ss_pred CCEEEEecCCHHHHHHHHHHHHhC----CCCeEEEeeCCCCC---------------H----HH---HHHHHHHHHHhCC
Confidence 489999999999988777665553 45889998764321 0 11 2234456777788
Q ss_pred ceEEEEEEcCCHH--------------------------HHHHHHHHHcCCCEEEEcCCCCCCC
Q 044284 99 QCELVVLERQDVA--------------------------RALIEYVSQYGVETMLLGAPTKNGL 136 (421)
Q Consensus 99 ~~e~vvleg~dva--------------------------~aIve~A~~~~idlIVmGs~gr~~f 136 (421)
++..+.... ... ..+-+++.+++++.|++|.+.-.+.
T Consensus 99 ~~~v~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~K~~~l~~~~~~~~~~~i~~G~r~dd~~ 161 (215)
T 1sur_A 99 NLKVYRATE-SAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSG 161 (215)
T ss_dssp EEEEEECSS-CHHHHHHHHCCGGGSHHHHHHHHHHHHTHHHHHHHHHHTTEEEEECCCCTTSSS
T ss_pred cEEEEeCCC-CHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHhcCCceEEEEeehhhhh
Confidence 877543321 110 0234567788889999998764443
No 39
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=78.27 E-value=2.1 Score=40.68 Aligned_cols=86 Identities=16% Similarity=0.147 Sum_probs=54.4
Q ss_pred ccCCCHHHHHHHHHHHHHHhcCCC--EEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhcCCceE
Q 044284 24 AIDKDKFSQHALKWAADNILSRHQ--TIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRHIQCE 101 (421)
Q Consensus 24 AVDgS~~S~~ALkwAid~a~~~ga--~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~gV~~e 101 (421)
+--.++.+.+||..|+.+....|. +|++|.+-++. +++.+..+.. .|+.-
T Consensus 32 ~~~lnp~d~~ale~A~~Lke~~g~~~~V~av~~G~~~-----------------------~~~~lr~ala----~GaD~- 83 (264)
T 1o97_C 32 MYDLNEWDDFSLEEAMKIKESSDTDVEVVVVSVGPDR-----------------------VDESLRKCLA----KGADR- 83 (264)
T ss_dssp EEEECHHHHHHHHHHHHHHHHCSSCCEEEEEEESCGG-----------------------GHHHHHHHHH----TTCSE-
T ss_pred CCccCHHHHHHHHHHHHHHHhcCCCceEEEEEeCchh-----------------------HHHHHHHHHh----cCCCE-
Confidence 334468899999999998755465 88888775421 1122333221 24322
Q ss_pred EEEEEcC-----C---HHHHHHHHHHHcCCCEEEEcCCCCCCCc
Q 044284 102 LVVLERQ-----D---VARALIEYVSQYGVETMLLGAPTKNGLS 137 (421)
Q Consensus 102 ~vvleg~-----d---va~aIve~A~~~~idlIVmGs~gr~~f~ 137 (421)
.+++++. + .+.+|.+++++.+.|+|++|....++..
T Consensus 84 vi~v~d~~~~~~~~~~~a~~La~~i~~~~~dlVl~G~~s~d~~~ 127 (264)
T 1o97_C 84 AVRVWDDAAEGSDAIVVGRILTEVIKKEAPDMVFAGVQSSDQAY 127 (264)
T ss_dssp EEEECCGGGTTCCHHHHHHHHHHHHHHHCCSEEEEESCCTTTCC
T ss_pred EEEEcCcccccCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCch
Confidence 2333321 2 4568888999999999999999876554
No 40
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=76.34 E-value=11 Score=38.83 Aligned_cols=87 Identities=11% Similarity=-0.044 Sum_probs=56.9
Q ss_pred CEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 044284 19 KIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRHI 98 (421)
Q Consensus 19 ~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~gV 98 (421)
.+|+|++.|...|.-++.++.+. |..++.|||-..... .. + .+..+.+|+..||
T Consensus 210 ~kvvvalSGGvDSsvla~ll~~~----g~~v~av~vd~g~~~-------~~-----------e----~~~v~~~~~~lgi 263 (503)
T 2ywb_A 210 DRVLLAVSGGVDSSTLALLLAKA----GVDHLAVFVDHGLLR-------LG-----------E----REEVEGALRALGV 263 (503)
T ss_dssp SEEEEEECSSHHHHHHHHHHHHH----TCEEEEEEEECSCSC-------TT-----------H----HHHHHHHHHHTTC
T ss_pred ccEEEEecCCcchHHHHHHHHHc----CCeEEEEEEeCCCCC-------hH-----------H----HHHHHHHHHHhCC
Confidence 68999999999998888776654 788999999754311 00 0 1233444555677
Q ss_pred ceEEEEEEc---------CCHH-----------HHHHHHHHHc-CCCEEEEcCC
Q 044284 99 QCELVVLER---------QDVA-----------RALIEYVSQY-GVETMLLGAP 131 (421)
Q Consensus 99 ~~e~vvleg---------~dva-----------~aIve~A~~~-~idlIVmGs~ 131 (421)
++..+-... .++. ..+.++|.+. +++.|+.|++
T Consensus 264 ~~~vv~~~~~f~~~l~g~~~pe~~r~~~~~~~~~~l~~~A~~~~g~~~la~G~~ 317 (503)
T 2ywb_A 264 NLLVVDAKERFLKALKGVEDPEEKRKIIGREFVAAFSQVARERGPFRFLAQGTL 317 (503)
T ss_dssp CEEEEECHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHCCCSEEECCCC
T ss_pred CEEEEECcHHHHHhhcCCCChHHHhhhhhHHHHHHHHHHHHhcCCCCEEEECCc
Confidence 766543321 1221 1344668888 9999999997
No 41
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=75.95 E-value=15 Score=37.35 Aligned_cols=39 Identities=13% Similarity=0.087 Sum_probs=30.4
Q ss_pred CCCCCEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecC
Q 044284 15 EGREKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQK 57 (421)
Q Consensus 15 ~~~~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~ 57 (421)
.-+..+|+||+.|.-.|--++.|+.+ .|..|+.||+.-.
T Consensus 11 ~~~~~KVVVA~SGGlDSSv~a~~Lke----~G~eViavt~d~G 49 (421)
T 1vl2_A 11 HHMKEKVVLAYSGGLDTSVILKWLCE----KGFDVIAYVANVG 49 (421)
T ss_dssp ---CCEEEEECCSSHHHHHHHHHHHH----TTCEEEEEEEESS
T ss_pred ccccCCEEEEeCCcHHHHHHHHHHHH----CCCeEEEEEEEcC
Confidence 45778999999999888899999865 3788999998643
No 42
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=75.79 E-value=3.9 Score=42.68 Aligned_cols=88 Identities=13% Similarity=0.008 Sum_probs=57.6
Q ss_pred CEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHH-HHHhhhcC
Q 044284 19 KIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPF-RCYCTRRH 97 (421)
Q Consensus 19 ~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~-r~~c~~~g 97 (421)
.+|+|++.|...|--++.++.+.+ |..++.|||...... . .+. ..+ +.+|+..|
T Consensus 231 ~kvlvalSGGvDSsvla~ll~~~~---G~~v~av~vd~g~~~-------~-----------~e~----~~~~~~~a~~lg 285 (527)
T 3tqi_A 231 EQVIVGLSGGVDSAVTATLVHKAI---GDQLVCVLVDTGLLR-------L-----------NEV----DEVLNVFQKHLG 285 (527)
T ss_dssp SCEEEECTTTHHHHHHHHHHHHHH---GGGEEEEEECCSCSC-------T-----------THH----HHHHHHHTTSSC
T ss_pred CeEEEEEecCcCHHHHHHHHHHHh---CCeEEEEEeccCCCC-------h-----------hHH----HHHHHHHHHHcC
Confidence 789999999999988888877654 567999999754321 0 011 122 23677778
Q ss_pred CceEEEEEEc---------CCHHH-----------HHHHHHHHcCCCEEEEcCC
Q 044284 98 IQCELVVLER---------QDVAR-----------ALIEYVSQYGVETMLLGAP 131 (421)
Q Consensus 98 V~~e~vvleg---------~dva~-----------aIve~A~~~~idlIVmGs~ 131 (421)
|++..+-... .++.. .+.++|.+.+++.|+.|.+
T Consensus 286 i~~~vv~~~~~~~~~l~g~~~~~~~r~~~~~~~~~~~~~~A~~~g~~~la~Gh~ 339 (527)
T 3tqi_A 286 AKVICVDAKDRFMKALKGISDPEEKRKIAGEQFIRVFEEQAKKLNVKWLGQGTI 339 (527)
T ss_dssp CEEEEECCHHHHHSSSSSCCCHHHHHHHHHHHHHHHHHHTTTTTTCCEEECCCC
T ss_pred CcEEEEeChHHHHHhhcCCCChhhhhhhhHHHHHHHHHHHHHHcCCCEEEcccc
Confidence 8776443211 12222 1346788889999999984
No 43
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Probab=75.36 E-value=8.6 Score=37.08 Aligned_cols=89 Identities=15% Similarity=0.070 Sum_probs=57.0
Q ss_pred CEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHH-HhhhcC
Q 044284 19 KIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRC-YCTRRH 97 (421)
Q Consensus 19 ~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~-~c~~~g 97 (421)
.+|+|++.|...|--++.++.+.+ |..++.+||-..... .. +. ..++. +|+..|
T Consensus 21 ~kvlvalSGGvDSsvla~ll~~~~---g~~v~av~vd~g~~~-------~~-----------e~----~~~~~~~a~~lg 75 (308)
T 2dpl_A 21 SKAIIALSGGVDSSTAAVLAHKAI---GDRLHAVFVNTGFLR-------KG-----------EP----EFVVKTFRDEFG 75 (308)
T ss_dssp SCEEEECCSSHHHHHHHHHHHHHH---GGGEEEEEEECSCCC-------TT-----------HH----HHHHHHHTTTTC
T ss_pred CCEEEEEeChHHHHHHHHHHHHhh---CCCEEEEEEcCCCCC-------hH-----------HH----HHHHHHHHHHcC
Confidence 689999999999988888777654 567999999764321 00 01 11222 334557
Q ss_pred CceEEEEEEc---------CCHH-----------HHHHHHHHHcCCCEEEEcCCC
Q 044284 98 IQCELVVLER---------QDVA-----------RALIEYVSQYGVETMLLGAPT 132 (421)
Q Consensus 98 V~~e~vvleg---------~dva-----------~aIve~A~~~~idlIVmGs~g 132 (421)
|++..+-... .++. ..+.++|.+.+++.|+.|.+.
T Consensus 76 i~~~vv~~~~~f~~~l~~~~~pe~~~~~~~~~~~~~l~~~A~~~g~~~la~Gh~~ 130 (308)
T 2dpl_A 76 MNLHYVDAQDRFFSALKGVTDPEEKRKIIGRVFIEVFEEVAKKIGAEYLIQGTIA 130 (308)
T ss_dssp CEEEEEECHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHTCSEEECCCCC
T ss_pred CcEEEEECCHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHcCcCEEEECCCC
Confidence 7665543321 1222 234468889999999999874
No 44
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=75.01 E-value=11 Score=36.52 Aligned_cols=94 Identities=7% Similarity=0.132 Sum_probs=62.8
Q ss_pred CCEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 044284 18 EKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRH 97 (421)
Q Consensus 18 ~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~g 97 (421)
..+|||+++........+..|.++... .+-|++++|.+.... +. . .++ +..+++++.++|
T Consensus 20 rP~iLV~sg~p~~~~~li~la~~lt~~-~G~ltv~~i~p~~~~--------~~---l-------~~q-l~~l~~~l~~r~ 79 (294)
T 3g40_A 20 KANLLVPVEDPRELMGTFDFLRDITYP-KGSVKLLGLAGNTDK--------EN---L-------LSQ-LPSISEGFQEEG 79 (294)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHHHTT-TCEEEEEECC---CT--------TC---H-------HHH-HHHHHHHHHHTT
T ss_pred CCcEEEecCCchhhhhHHHHHHHhccC-ceeEEEEEEccCCCc--------cH---H-------HHH-HHHHHHHHHhCC
Confidence 368999998877778888888777754 556899999754321 00 0 111 255577788899
Q ss_pred CceEEEEEEcCCHHHHHHHHHHHcCCC-----EEEEcCC
Q 044284 98 IQCELVVLERQDVARALIEYVSQYGVE-----TMLLGAP 131 (421)
Q Consensus 98 V~~e~vvleg~dva~aIve~A~~~~id-----lIVmGs~ 131 (421)
|.+-..++...|+..++...++.+++. .|+||-.
T Consensus 80 v~a~~~vi~a~d~~~G~~~lvq~yglg~l~PNTilLg~~ 118 (294)
T 3g40_A 80 VFSSWTIIDTAEFEENLVVGMEALTGSFFRPSILFLRLP 118 (294)
T ss_dssp CEEEEEEC-----CHHHHHHHHHHTTCSSCSCEEEEECC
T ss_pred ceeEEEEEecCChhHHHHHHHHHcCCCCCCCCEEEeCCC
Confidence 999888888888999999998888754 6777765
No 45
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=73.35 E-value=9 Score=38.13 Aligned_cols=97 Identities=13% Similarity=0.098 Sum_probs=61.2
Q ss_pred CCEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 044284 18 EKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRH 97 (421)
Q Consensus 18 ~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~g 97 (421)
..+|+|++.|-..|--++.++.+ .|-.|+.||+....... ...+. ...+-+..++.+|...|
T Consensus 9 ~~kVlVa~SGGvDSsv~a~lL~~----~G~~V~~v~~~~~~~~~---------~~~~c-----~~~~d~~~a~~va~~lG 70 (376)
T 2hma_A 9 KTRVVVGMSGGVDSSVTALLLKE----QGYDVIGIFMKNWDDTD---------ENGVC-----TATEDYKDVVAVADQIG 70 (376)
T ss_dssp GSEEEEECCSSHHHHHHHHHHHH----TTCEEEEEEEECCCCCC-------------C-----HHHHHHHHHHHHHHHHT
T ss_pred CCeEEEEEeCHHHHHHHHHHHHH----cCCcEEEEEEECCCccc---------ccccC-----CCHHHHHHHHHHHHHhC
Confidence 46899999999988887766544 47889999997643210 00010 01111355666777777
Q ss_pred CceEEEEEEcC-------------------CH---------HHHHHHHHHHcCCCEEEEcCCC
Q 044284 98 IQCELVVLERQ-------------------DV---------ARALIEYVSQYGVETMLLGAPT 132 (421)
Q Consensus 98 V~~e~vvleg~-------------------dv---------a~aIve~A~~~~idlIVmGs~g 132 (421)
|++..+-+... +| -..+.++|.+.++|.|+.|.+.
T Consensus 71 Ip~~vv~~~~~~~~~v~~~~l~~y~~G~tpnpc~~C~r~ik~~~l~~~A~~~G~d~IatGH~a 133 (376)
T 2hma_A 71 IPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAITLGADYVATGHYA 133 (376)
T ss_dssp CCEEEEECHHHHHHHTHHHHHHHHHTTCCCCHHHHHHHHTTTTHHHHHHHTTTCSEEECCCSE
T ss_pred CcEEEEeChHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHhCCCCEEEECcch
Confidence 77765543210 00 2356788999999999999864
No 46
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=70.78 E-value=11 Score=33.83 Aligned_cols=36 Identities=14% Similarity=-0.088 Sum_probs=28.1
Q ss_pred CEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCC
Q 044284 19 KIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKS 58 (421)
Q Consensus 19 ~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~ 58 (421)
.+|+|++.|...|.-++.++.+ .|..++++||....
T Consensus 7 ~kv~v~~SGG~DS~~ll~ll~~----~g~~v~~~~v~~~~ 42 (203)
T 3k32_A 7 MDVHVLFSGGKDSSLSAVILKK----LGYNPHLITINFGV 42 (203)
T ss_dssp EEEEEECCCSHHHHHHHHHHHH----TTEEEEEEEEECSS
T ss_pred CeEEEEEECcHHHHHHHHHHHH----cCCCeEEEEEeCCC
Confidence 5899999999998888765432 46789999997643
No 47
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=70.60 E-value=10 Score=35.48 Aligned_cols=40 Identities=3% Similarity=-0.223 Sum_probs=29.9
Q ss_pred CCEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCC
Q 044284 18 EKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKS 58 (421)
Q Consensus 18 ~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~ 58 (421)
+.+|+|++.|.+.|.-.|..+.+.... +..+.++|+-+..
T Consensus 41 ~~~v~va~SGGkDS~vLL~ll~~~~~~-~~~i~vv~iDtg~ 80 (261)
T 2oq2_A 41 FPHLFQTTAFGLTGLVTIDMLSKLSEK-YYMPELLFIDTLH 80 (261)
T ss_dssp CSSEEEECCCCHHHHHHHHHHHHHTTT-SCCCEEEEECCSC
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhCcc-CCCeeEEEecCCC
Confidence 458999999999998877776665533 4568889986543
No 48
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=70.23 E-value=77 Score=32.55 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=13.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044284 285 DVEDDVKRLKMELKQTMDMYNAACKE 310 (421)
Q Consensus 285 ~~eaEm~rLrlELk~tm~my~~AckE 310 (421)
+++.||++|+-|+.+..........+
T Consensus 460 ~~~~~i~~l~~~~~~~~~~l~~~~~~ 485 (597)
T 3oja_B 460 ELRAEVQQLTNEQIQQEQLLQGLHAE 485 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666666655554444444333
No 49
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=69.73 E-value=15 Score=31.50 Aligned_cols=54 Identities=22% Similarity=0.243 Sum_probs=42.4
Q ss_pred CChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHhhhhhh
Q 044284 281 QNMEDVEDDVKRLKMELKQTMDMYNAACKEALAAKQKAVELEKWKMKEEKRLKE 334 (421)
Q Consensus 281 ~~~~~~eaEm~rLrlELk~tm~my~~AckEa~~Akqk~~eL~~~~~EE~~k~ee 334 (421)
+..++++-|+..||-||..+..-+..+-+|.-..+++.++|+....+-+..+++
T Consensus 82 ~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 82 LDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344677778888999999999999999999888898888888776555555544
No 50
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Probab=68.46 E-value=37 Score=32.63 Aligned_cols=88 Identities=11% Similarity=0.141 Sum_probs=52.6
Q ss_pred CCCEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 044284 17 REKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRR 96 (421)
Q Consensus 17 ~~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~ 96 (421)
...+++|++.| -.|--|+-++ ...|..++.+|.. .. . . ..+.++++-..+..+.-..
T Consensus 178 ~~~kvlvllSG-vDS~vaa~ll----~~~G~~v~~v~~~---~~------~-~--------~~~~a~~~a~~l~~~~~~~ 234 (307)
T 1vbk_A 178 TEGRMIGILHD-ELSALAIFLM----MKRGVEVIPVYIG---KD------D-K--------NLEKVRSLWNLLKRYSYGS 234 (307)
T ss_dssp TTCEEEEECSS-HHHHHHHHHH----HHBTCEEEEEEES---CS------S-H--------HHHHHHHHHHHHHTTCTTS
T ss_pred CCCcEEEEEeC-CcHHHHHHHH----HhCCCeEEEEEEE---EC------H-H--------HHHHHHHHHHHHhhhccCC
Confidence 35799999999 9887665443 3469999999998 11 0 0 0111222222221111123
Q ss_pred CCceEEEEEEcCCHHHHHHHHHHHcCCCEEEEcCCC
Q 044284 97 HIQCELVVLERQDVARALIEYVSQYGVETMLLGAPT 132 (421)
Q Consensus 97 gV~~e~vvleg~dva~aIve~A~~~~idlIVmGs~g 132 (421)
++++..+ . +. ..+.++|.+.++|.|+.|.+.
T Consensus 235 ~i~~~vv--~--~~-~~~~~~A~~~ga~~I~tG~~~ 265 (307)
T 1vbk_A 235 KGFLVVA--E--SF-DRVLKLIRDFGVKGVIKGLRP 265 (307)
T ss_dssp CCCCEEE--S--SH-HHHHHHHHHHTCCEEECCCCG
T ss_pred CCcEEEe--C--CC-HHHHHHHHHcCCCEEEECccc
Confidence 6666533 2 02 334499999999999999873
No 51
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=67.90 E-value=38 Score=31.56 Aligned_cols=38 Identities=21% Similarity=0.315 Sum_probs=29.4
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044284 284 EDVEDDVKRLKMELKQTMDMYNAACKEALAAKQKAVEL 321 (421)
Q Consensus 284 ~~~eaEm~rLrlELk~tm~my~~AckEa~~Akqk~~eL 321 (421)
..+..++...-.+|..+...|..+|+|+-.|+++....
T Consensus 119 ~k~~k~~~~~~~~l~KaKk~Y~~~~~e~e~a~~~~~~a 156 (301)
T 2efk_A 119 RRAQQQLENGFKQLENSKRKFERDCREAEKAAQTAERL 156 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45555666666777888999999999999999886543
No 52
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=66.25 E-value=43 Score=31.18 Aligned_cols=38 Identities=18% Similarity=0.286 Sum_probs=28.6
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044284 284 EDVEDDVKRLKMELKQTMDMYNAACKEALAAKQKAVEL 321 (421)
Q Consensus 284 ~~~eaEm~rLrlELk~tm~my~~AckEa~~Akqk~~eL 321 (421)
..+..++.+...+|..+...|..+|+|+-.|+++....
T Consensus 126 ~k~~k~~~~~~~~l~KaK~~Y~~~~~e~e~a~~~~~~~ 163 (305)
T 2efl_A 126 RKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKM 163 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666677778899999999999999886544
No 53
>2iel_A Hypothetical protein TT0030; TT0030,thermus thermophilus, structural genomics, PSI, protein structure initiative; 1.60A {Thermus thermophilus} SCOP: c.26.2.4
Probab=64.02 E-value=35 Score=29.35 Aligned_cols=79 Identities=18% Similarity=0.029 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHhhhcCCceE-EEEEEcCCHHHHHHHHHHHcC--CCEEEEcCCCCCCCcccccccccccccccchh
Q 044284 78 HDIHAMEVFLPFRCYCTRRHIQCE-LVVLERQDVARALIEYVSQYG--VETMLLGAPTKNGLSRSSFCRLFKASDTPGTV 154 (421)
Q Consensus 78 ~~~~a~elL~~~r~~c~~~gV~~e-~vvleg~dva~aIve~A~~~~--idlIVmGs~gr~~f~~~~~~r~~~~~sVa~~V 154 (421)
.+..+++-|..-...+...|+.+. .-+.+ ++|-.+|.+.+...+ +|-||+-+..+ .+. +.| .-|+++..
T Consensus 52 a~~~A~~~l~~sl~aL~~~G~~a~~G~v~d-~~Pl~AL~~~v~~~~~~~deiIV~T~Ph-~vs-----~~f-h~DwasrA 123 (138)
T 2iel_A 52 VRRRAEEEAAAAKRALEAQGIPVEEAKAGD-ISPLLAIEEELLAHPGAYQGIVLSTLPP-GLS-----RWL-RLDVHTQA 123 (138)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCCSEEEEEE-SSHHHHHHHHHHHSTTSCSEEEEEECCT-TTC-----HHH-HTTHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHcCCcccccccCC-CChHHHHHHHHHhcCCCCceEEEEcCCc-hHH-----HHH-hccHHHHH
Confidence 445566667777777778899998 76666 479999999999999 99999999864 344 444 35777776
Q ss_pred cccCCCcceEEEE
Q 044284 155 LKWAPDFCNVYIV 167 (421)
Q Consensus 155 ~k~Ap~~C~V~VV 167 (421)
=+ .- .||+=+
T Consensus 124 r~-~g--vPVlhl 133 (138)
T 2iel_A 124 ER-FG--LPVIHV 133 (138)
T ss_dssp GG-GS--SCEEEE
T ss_pred Hh-cC--CCEEEE
Confidence 66 43 566544
No 54
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=63.76 E-value=1.1e+02 Score=31.54 Aligned_cols=89 Identities=27% Similarity=0.253 Sum_probs=43.3
Q ss_pred hcHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHhhhhhhhhhchh---hhHHHHHHHHHHHH
Q 044284 284 EDVEDDVKRLKME------LKQTMDMYNAACKEALAAKQKAVELEKWKMKEEKRLKETQMGEE---RGKAKIKAAIEAAE 354 (421)
Q Consensus 284 ~~~eaEm~rLrlE------Lk~tm~my~~AckEa~~Akqk~~eL~~~~~EE~~k~eea~~~eE---~EKak~~aA~eaaE 354 (421)
+|||.+-++.+-| |+|- |..|..|--.|..-++-++....--....+.|...-+ +||+..+.++ ++
T Consensus 335 ~~ve~~Kki~naevae~~~lrQR---lddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n~~--a~ 409 (602)
T 1cii_A 335 EDVEGDKKIYNAEVAEWDKLRQR---LLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQL--SG 409 (602)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
T ss_pred hhhhhHHHHHhhhhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hh
Confidence 5666554444444 3332 7777777666665555554443333222333333333 4444444343 34
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHH
Q 044284 355 AAQKIAKLEVQKRVNAEAKALKEAEE 380 (421)
Q Consensus 355 ~ak~~ae~EaqkR~~aE~kA~~e~~e 380 (421)
.=|++||.. |++.|.++.+.+-+
T Consensus 410 ~~~KiAE~K---rK~dE~~aIKDAVk 432 (602)
T 1cii_A 410 INQKIAEEK---RKQDELKATKDAIN 432 (602)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred hhhHHHHHH---HhhhHHHHHHHHHH
Confidence 445555433 44556666655443
No 55
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=63.13 E-value=24 Score=33.86 Aligned_cols=97 Identities=12% Similarity=0.106 Sum_probs=59.3
Q ss_pred CEEEEccCCCHHHHHHHHHHHHHHhc------------------CCCEEEEEEEecCCCCCCccccccchHHHHHHHHHH
Q 044284 19 KIVAVAIDKDKFSQHALKWAADNILS------------------RHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDI 80 (421)
Q Consensus 19 ~~IlVAVDgS~~S~~ALkwAid~a~~------------------~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (421)
.+|+|+..|.+.|.-.|.-+.+.+.. .+..+.+||+-....+ .
T Consensus 54 ~~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vv~iDtg~~f---------------p---- 114 (306)
T 2wsi_A 54 GEISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQRLPTVFIDQEETF---------------P---- 114 (306)
T ss_dssp SSEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCEEEEECCCTTCC---------------H----
T ss_pred CCEEEEecCCHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCeeEEEEeCCCCC---------------H----
Confidence 47999999999998888777665421 1456888888754322 0
Q ss_pred HHHHHHHHHHHHhhhcCCceEEEEEE---cCCHHHHHHHHHHHc-CCCEEEEcCCCCCCCc
Q 044284 81 HAMEVFLPFRCYCTRRHIQCELVVLE---RQDVARALIEYVSQY-GVETMLLGAPTKNGLS 137 (421)
Q Consensus 81 ~a~elL~~~r~~c~~~gV~~e~vvle---g~dva~aIve~A~~~-~idlIVmGs~gr~~f~ 137 (421)
+..++ ...++++.|+++..+... .....+++.++.+.. .++.|++|.+.--...
T Consensus 115 et~~f---v~~~~~~ygl~l~v~~~~~~~~~~l~~~~~~~~k~~p~~~aii~G~Rrdds~~ 172 (306)
T 2wsi_A 115 TLENF---VLETSERYCLSLYESQRQSGASVNMADAFRDFIKIYPETEAIVIGIRHTDPFG 172 (306)
T ss_dssp HHHHH---HHHHHHHTTEEEEECCC-----CCHHHHHHHHHHHCTTCCEEECCCCCCSSSC
T ss_pred HHHHH---HHHHHHHcCCCEEEEeCCccccccHHHHHHHHHhhCCCCcEEEEEEecccccc
Confidence 11111 223344557665432211 123566777888774 6899999998655544
No 56
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Probab=61.55 E-value=29 Score=35.38 Aligned_cols=97 Identities=13% Similarity=0.181 Sum_probs=62.2
Q ss_pred EEEEccCCC--HHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 044284 20 IVAVAIDKD--KFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRH 97 (421)
Q Consensus 20 ~IlVAVDgS--~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~g 97 (421)
.++|=+-+| -.--.||..|++.+...+..|+.|+|.++... ..+ .....-..+-|..+..-+.+.|
T Consensus 38 ~~l~WfrrDLRl~DN~aL~~A~~~a~~~~~~v~~vfi~dp~~~----~~~--------~~r~~Fl~~sL~~L~~~L~~~G 105 (482)
T 2xry_A 38 PVVYWMSRDQRAEDNWALLFSRAIAKEANVPVVVVFCLTDEFL----EAG--------IRQYEFMLKGLQELEVSLSRKK 105 (482)
T ss_dssp CEEEECSSCCCSSSCHHHHHHHHHHHHHTSCEEEEEEECTTGG----GSC--------HHHHHHHHHHHHHHHHHHHHTT
T ss_pred cEEEEecCCCCccccHHHHHHHHHHHHcCCcEEEEEEeChhhh----ccC--------HHHHHHHHHHHHHHHHHHHHcC
Confidence 455555555 12236788888776555677999999987532 000 0001122334555666666778
Q ss_pred CceEEEEEEcCCHHHHHHHHHHHcCCCEEEEcCC
Q 044284 98 IQCELVVLERQDVARALIEYVSQYGVETMLLGAP 131 (421)
Q Consensus 98 V~~e~vvleg~dva~aIve~A~~~~idlIVmGs~ 131 (421)
+.+. ++. +++.+.|.+++++++|+.|+.-..
T Consensus 106 ~~L~--v~~-g~~~~~l~~l~~~~~~~~V~~~~~ 136 (482)
T 2xry_A 106 IPSF--FLR-GDPGEKISRFVKDYNAGTLVTDFS 136 (482)
T ss_dssp CCEE--EEE-SCHHHHHHHHHHHTTCSEEEEECC
T ss_pred CcEE--EEe-CCHHHHHHHHHHHcCCCEEEEecc
Confidence 7753 444 589999999999999999998654
No 57
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=61.16 E-value=26 Score=36.28 Aligned_cols=88 Identities=14% Similarity=0.044 Sum_probs=57.4
Q ss_pred CEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHH-HHHhhhcC
Q 044284 19 KIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPF-RCYCTRRH 97 (421)
Q Consensus 19 ~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~-r~~c~~~g 97 (421)
.+|+|++.|...|--++.++.+.+ |..++.|||...... .. +. ..+ +.+|...|
T Consensus 228 ~~vvvalSGGvDSsv~a~ll~~a~---G~~v~av~v~~g~~~-------~~-----------e~----~~~~~~la~~lg 282 (525)
T 1gpm_A 228 DKVILGLSGGVDSSVTAMLLHRAI---GKNLTCVFVDNGLLR-------LN-----------EA----EQVLDMFGDHFG 282 (525)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHH---GGGEEEEEEECSCSC-------TT-----------HH----HHHHHHHTTTTC
T ss_pred cceEEEecCCCCHHHHHHHHHHHh---CCCEEEEEEeCCCCC-------ch-----------HH----HHHHHHHHHHhC
Confidence 689999999999988888877654 567999999764321 00 01 111 23566667
Q ss_pred CceEEEEEEc---------CCHH-----------HHHHHHHHHc-CCCEEEEcCC
Q 044284 98 IQCELVVLER---------QDVA-----------RALIEYVSQY-GVETMLLGAP 131 (421)
Q Consensus 98 V~~e~vvleg---------~dva-----------~aIve~A~~~-~idlIVmGs~ 131 (421)
|++..+-... .++. ..+.++|.+. +++.||.|++
T Consensus 283 i~~~~v~~~~~f~~~l~~~~~pe~~~~~~~~~~~~~l~~~A~~~~g~~~l~~Gt~ 337 (525)
T 1gpm_A 283 LNIVHVPAEDRFLSALAGENDPEAKRKIIGRVFVEVFDEEALKLEDVKWLAQGTI 337 (525)
T ss_dssp CCEEEEECHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHSSSEEEEECCCC
T ss_pred CcEEEEeccHHHHHhhcCCCChHHhhhhhhHHHHHHHHHHHHhcCCCCEEEeCCC
Confidence 7766543321 1221 2345678888 9999999996
No 58
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=60.13 E-value=1.1e+02 Score=28.34 Aligned_cols=92 Identities=11% Similarity=0.044 Sum_probs=60.9
Q ss_pred CCEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 044284 18 EKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRH 97 (421)
Q Consensus 18 ~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~g 97 (421)
.+..++++.++. ..+++-.++.-...++.|+||...+.. ++..+.++.++.+|...|
T Consensus 8 ~~~~~~tlGFd~--~~~vral~~~g~~~~d~ViLv~~~~~~---------------------~~~~~A~~~i~~~l~~~~ 64 (244)
T 2wte_A 8 MKSYFVTMGFNE--TFLLRLLNETSAQKEDSLVIVVPSPIV---------------------SGTRAAIESLRAQISRLN 64 (244)
T ss_dssp CCEEEECCCSCC--HHHHHHHHHTTCCTTSEEEEEEESSCC---------------------HHHHHHHHHHHHHHHHHT
T ss_pred hhhheeccCcCh--HHHHHHHHHhCCCCCCEEEEEeCCCcc---------------------hhHHHHHHHHHHHHHHcC
Confidence 356788999986 477776777666678899997754331 245666777777787765
Q ss_pred -CceEEEEEEcCCHHHHH---HHHHHHcCCCEEEEcCCC
Q 044284 98 -IQCELVVLERQDVARAL---IEYVSQYGVETMLLGAPT 132 (421)
Q Consensus 98 -V~~e~vvleg~dva~aI---ve~A~~~~idlIVmGs~g 132 (421)
++++.+.++-.|..+.+ .+.+.+..-+.+|--+.|
T Consensus 65 ~i~~e~~~vd~~df~~~v~~i~~~i~~~~~~iivnlsGG 103 (244)
T 2wte_A 65 YPPPRIYEIEITDFNLALSKILDIILTLPEPIISDLTMG 103 (244)
T ss_dssp CCCEEEEEECCCSHHHHHHHHHHHHTTSCSSEEEECSSS
T ss_pred CCceEEEEECCccHHHHHHHHHHHHhhcCCcEEEEecCC
Confidence 58888888776776554 445544322666644444
No 59
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=59.40 E-value=13 Score=33.24 Aligned_cols=61 Identities=16% Similarity=0.251 Sum_probs=42.0
Q ss_pred HhhhcCCceEEEEEEcCCHHHHHHHHHHH---cCCCEEEEcCCCCCCCcccccccccccccccchhcccCCCcceEEEEe
Q 044284 92 YCTRRHIQCELVVLERQDVARALIEYVSQ---YGVETMLLGAPTKNGLSRSSFCRLFKASDTPGTVLKWAPDFCNVYIVS 168 (421)
Q Consensus 92 ~c~~~gV~~e~vvleg~dva~aIve~A~~---~~idlIVmGs~gr~~f~~~~~~r~~~~~sVa~~V~k~Ap~~C~V~VV~ 168 (421)
.++..||.++..+.--+-..+.+.+|+++ .+++.||.|+-+-+.|- .-|.-.++ +||+-|+
T Consensus 34 ~l~~~gi~~ev~V~saHR~p~~l~~~~~~a~~~g~~ViIa~AG~aahLp--------------gvvA~~t~--~PVIgVP 97 (173)
T 4grd_A 34 ILQEFGVPYEAKVVSAHRMPDEMFDYAEKARERGLRAIIAGAGGAAHLP--------------GMLAAKTT--VPVLGVP 97 (173)
T ss_dssp HHHHTTCCEEEEECCTTTSHHHHHHHHHHHTTTTCSEEEEEEESSCCHH--------------HHHHHHCC--SCEEEEE
T ss_pred HHHHcCCCEEEEEEccccCHHHHHHHHHHHHhcCCeEEEEeccccccch--------------hhheecCC--CCEEEEE
Confidence 34456899998877766667777777765 68899998886544443 22333345 8999887
No 60
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=58.26 E-value=33 Score=34.07 Aligned_cols=99 Identities=12% Similarity=0.115 Sum_probs=63.2
Q ss_pred CCCEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 044284 17 REKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRR 96 (421)
Q Consensus 17 ~~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~ 96 (421)
...+|+|++.|-..|--++.++.+ .|-.|+.||+...... . ...+. ...+-+..++..|...
T Consensus 16 ~~~kVvVa~SGGvDSsv~a~lL~~----~G~~V~~v~~~~~~~~--------~-~~~~~-----~s~~d~~~a~~va~~L 77 (380)
T 2der_A 16 TAKKVIVGMSGGVDSSVSAWLLQQ----QGYQVEGLFMKNWEED--------D-GEEYC-----TAAADLADAQAVCDKL 77 (380)
T ss_dssp -CCEEEEECCSCSTTHHHHHHHHT----TCCEEEEEEEECCCCC--------S-HHHHH-----HHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEEChHHHHHHHHHHHH----cCCeEEEEEEEcCccc--------c-ccCCC-----CCHHHHHHHHHHHHHc
Confidence 457999999999888777655443 4788999999754211 0 01111 1122256677788888
Q ss_pred CCceEEEEEEcC-------------------CH---------HHHHHHHHHH-cCCCEEEEcCCCC
Q 044284 97 HIQCELVVLERQ-------------------DV---------ARALIEYVSQ-YGVETMLLGAPTK 133 (421)
Q Consensus 97 gV~~e~vvleg~-------------------dv---------a~aIve~A~~-~~idlIVmGs~gr 133 (421)
||++..+-+... +| -..+.++|.+ .++|.|+.|.+.+
T Consensus 78 GIp~~vvd~~~~f~~~v~~~~~~ey~~G~tpnpc~~Cnr~ik~~~l~~~A~~~~Gad~IatGH~a~ 143 (380)
T 2der_A 78 GIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIATGHYVR 143 (380)
T ss_dssp TCCEEEEECHHHHHHHTHHHHHHHHHTTCCCCHHHHHHHHTTTTHHHHHHHHTTCCSEEECCCSCE
T ss_pred CCcEEEEeCcHHHHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHHHHHHHhhcCCCEEEEccccc
Confidence 888876544210 00 1345678888 9999999998654
No 61
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=57.48 E-value=18 Score=32.51 Aligned_cols=61 Identities=21% Similarity=0.239 Sum_probs=42.1
Q ss_pred HhhhcCCceEEEEEEcCCHHHHHHHHHHH---cCCCEEEEcCCCCCCCcccccccccccccccchhcccCCCcceEEEEe
Q 044284 92 YCTRRHIQCELVVLERQDVARALIEYVSQ---YGVETMLLGAPTKNGLSRSSFCRLFKASDTPGTVLKWAPDFCNVYIVS 168 (421)
Q Consensus 92 ~c~~~gV~~e~vvleg~dva~aIve~A~~---~~idlIVmGs~gr~~f~~~~~~r~~~~~sVa~~V~k~Ap~~C~V~VV~ 168 (421)
.+++.||.++..++--+-..+.+.+|+++ .+++.||.|+-+-+.|- .-|.-.++ +||+-|+
T Consensus 44 ~L~~~gI~~e~~V~SAHRtp~~l~~~~~~a~~~g~~ViIa~AG~aahLp--------------GvvAa~T~--~PVIGVP 107 (181)
T 4b4k_A 44 ILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLP--------------GMVAAKTN--LPVIGVP 107 (181)
T ss_dssp HHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEECSSCCHH--------------HHHHTTCC--SCEEEEE
T ss_pred HHHHcCCCeeEEEEccccChHHHHHHHHHHHhcCceEEEEeccccccch--------------hhHHhcCC--CCEEEEe
Confidence 34455899998888777777788888765 67899999986544443 22333344 7888886
No 62
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=56.91 E-value=57 Score=30.79 Aligned_cols=37 Identities=24% Similarity=0.408 Sum_probs=28.3
Q ss_pred hcHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 044284 284 EDVEDDVKRLKM-------ELKQTMDMYNAACKEALAAKQKAVE 320 (421)
Q Consensus 284 ~~~eaEm~rLrl-------ELk~tm~my~~AckEa~~Akqk~~e 320 (421)
.+++.+|+++.. +|......|..+|+|+-.|+++...
T Consensus 139 k~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~c~e~e~a~~~~~~ 182 (312)
T 3abh_A 139 KEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREAN 182 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456667776664 4677788999999999999887644
No 63
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=56.90 E-value=44 Score=34.07 Aligned_cols=38 Identities=24% Similarity=0.379 Sum_probs=27.6
Q ss_pred hcHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044284 284 EDVEDDVKRLK-------MELKQTMDMYNAACKEALAAKQKAVEL 321 (421)
Q Consensus 284 ~~~eaEm~rLr-------lELk~tm~my~~AckEa~~Akqk~~eL 321 (421)
.+++.+++++. .+|..+...|..+|+|+-.|+++....
T Consensus 132 K~~~~~~~k~qk~l~~~~~~l~KaKk~Y~~~cke~e~a~~~~~~a 176 (486)
T 3haj_A 132 KEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANS 176 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555554 577888899999999988888775543
No 64
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=56.49 E-value=63 Score=41.03 Aligned_cols=8 Identities=50% Similarity=0.526 Sum_probs=4.7
Q ss_pred HHHHHHhc
Q 044284 383 KLLDALWQ 390 (421)
Q Consensus 383 k~~~al~~ 390 (421)
++++.|.+
T Consensus 2077 ~Li~gL~~ 2084 (3245)
T 3vkg_A 2077 ALLDNLNS 2084 (3245)
T ss_dssp HHHHHHHH
T ss_pred HHHHhhhh
Confidence 45566665
No 65
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=52.65 E-value=52 Score=34.00 Aligned_cols=17 Identities=18% Similarity=0.260 Sum_probs=11.7
Q ss_pred HHHHHHhcCccchhhHH
Q 044284 383 KLLDALWQSHMVLKYQS 399 (421)
Q Consensus 383 k~~~al~~~d~~~~~~~ 399 (421)
.+-+++...|.+++|..
T Consensus 364 ~~~~~~~~~~~f~~~n~ 380 (551)
T 2b5u_A 364 TLADAIAEIKQFNRFAH 380 (551)
T ss_dssp HHHHHHHHHHHHGGGTT
T ss_pred HHHHHHHhhhhhhhhcc
Confidence 34578887787777753
No 66
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=52.65 E-value=1.3e+02 Score=28.64 Aligned_cols=32 Identities=25% Similarity=0.341 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044284 288 DDVKRLKMELKQTMDMYNAACKEALAAKQKAV 319 (421)
Q Consensus 288 aEm~rLrlELk~tm~my~~AckEa~~Akqk~~ 319 (421)
.++.....+|..+...|..+|+|+-.|+++..
T Consensus 141 k~~~~~~~~l~KaKk~Y~~~c~e~e~a~~~~~ 172 (337)
T 2x3v_A 141 KPWAKKMKELEAAKKAYHLACKEERLAMTREM 172 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 33444456677788899999999988887654
No 67
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=51.53 E-value=24 Score=31.31 Aligned_cols=63 Identities=19% Similarity=0.200 Sum_probs=43.2
Q ss_pred HHHhhhcCCceEEEEEEcCCHHHHHHHHHHH---cCCCEEEEcCCCCCCCcccccccccccccccchhcccCCCcceEEE
Q 044284 90 RCYCTRRHIQCELVVLERQDVARALIEYVSQ---YGVETMLLGAPTKNGLSRSSFCRLFKASDTPGTVLKWAPDFCNVYI 166 (421)
Q Consensus 90 r~~c~~~gV~~e~vvleg~dva~aIve~A~~---~~idlIVmGs~gr~~f~~~~~~r~~~~~sVa~~V~k~Ap~~C~V~V 166 (421)
...|+..||.++..+.--+-..+.+.+|+++ .+++.||.|+-+-+.|- .-|.-.++ +||+-
T Consensus 25 ~~~l~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lp--------------gvvA~~t~--~PVIg 88 (166)
T 3oow_A 25 CDILDNLGIGYECEVVSAHRTPDKMFDYAETAKERGLKVIIAGAGGAAHLP--------------GMVAAKTT--LPVLG 88 (166)
T ss_dssp HHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEECSSCCHH--------------HHHHHTCS--SCEEE
T ss_pred HHHHHHcCCCEEEEEEcCcCCHHHHHHHHHHHHhCCCcEEEEECCcchhhH--------------HHHHhccC--CCEEE
Confidence 3344456999998777666667888888765 46899999886544443 23333455 89988
Q ss_pred Ee
Q 044284 167 VS 168 (421)
Q Consensus 167 V~ 168 (421)
|+
T Consensus 89 VP 90 (166)
T 3oow_A 89 VP 90 (166)
T ss_dssp EE
T ss_pred ee
Confidence 86
No 68
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=51.14 E-value=21 Score=31.90 Aligned_cols=63 Identities=16% Similarity=0.192 Sum_probs=43.0
Q ss_pred HHHhhhcCCceEEEEEEcCCHHHHHHHHHHH---cCCCEEEEcCCCCCCCcccccccccccccccchhcccCCCcceEEE
Q 044284 90 RCYCTRRHIQCELVVLERQDVARALIEYVSQ---YGVETMLLGAPTKNGLSRSSFCRLFKASDTPGTVLKWAPDFCNVYI 166 (421)
Q Consensus 90 r~~c~~~gV~~e~vvleg~dva~aIve~A~~---~~idlIVmGs~gr~~f~~~~~~r~~~~~sVa~~V~k~Ap~~C~V~V 166 (421)
...|+..||+++..+.--+-..+.+.+|+++ .+++.||.|+-+-+.|- .-|.-.++ +||+-
T Consensus 32 ~~~L~~~Gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lp--------------gvvA~~t~--~PVIg 95 (174)
T 3kuu_A 32 ADVLTTLNVPFHVEVVSAHRTPDRLFSFAEQAEANGLHVIIAGNGGAAHLP--------------GMLAAKTL--VPVLG 95 (174)
T ss_dssp HHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCSEEEEEEESSCCHH--------------HHHHHTCS--SCEEE
T ss_pred HHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhH--------------HHHHhccC--CCEEE
Confidence 3344456999998877666677888888764 67898888886544443 22333445 89888
Q ss_pred Ee
Q 044284 167 VS 168 (421)
Q Consensus 167 V~ 168 (421)
|+
T Consensus 96 VP 97 (174)
T 3kuu_A 96 VP 97 (174)
T ss_dssp EE
T ss_pred ee
Confidence 86
No 69
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=50.99 E-value=19 Score=32.06 Aligned_cols=64 Identities=19% Similarity=0.170 Sum_probs=42.7
Q ss_pred HHHHhhhcCCceEEEEEEcCCHHHHHHHHHH---HcCCCEEEEcCCCCCCCcccccccccccccccchhcccCCCcceEE
Q 044284 89 FRCYCTRRHIQCELVVLERQDVARALIEYVS---QYGVETMLLGAPTKNGLSRSSFCRLFKASDTPGTVLKWAPDFCNVY 165 (421)
Q Consensus 89 ~r~~c~~~gV~~e~vvleg~dva~aIve~A~---~~~idlIVmGs~gr~~f~~~~~~r~~~~~sVa~~V~k~Ap~~C~V~ 165 (421)
....|+..||+++..+.--+-..+.+.+|++ +.+++.||.|+-+-+.|- .-|.-.++ +||+
T Consensus 25 a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lp--------------gvvA~~t~--~PVI 88 (169)
T 3trh_A 25 AFTELKSLGIPFEAHILSAHRTPKETVEFVENADNRGCAVFIAAAGLAAHLA--------------GTIAAHTL--KPVI 88 (169)
T ss_dssp HHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHHHTTEEEEEEEECSSCCHH--------------HHHHHTCS--SCEE
T ss_pred HHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhH--------------HHHHhcCC--CCEE
Confidence 3334445699999877766666677777765 478998888886544443 23333455 8998
Q ss_pred EEe
Q 044284 166 IVS 168 (421)
Q Consensus 166 VV~ 168 (421)
-|+
T Consensus 89 gVP 91 (169)
T 3trh_A 89 GVP 91 (169)
T ss_dssp EEE
T ss_pred Eee
Confidence 886
No 70
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron}
Probab=50.64 E-value=56 Score=29.71 Aligned_cols=85 Identities=12% Similarity=0.066 Sum_probs=55.6
Q ss_pred CEEEEccCC-----CHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHh
Q 044284 19 KIVAVAIDK-----DKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYC 93 (421)
Q Consensus 19 ~~IlVAVDg-----S~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c 93 (421)
..|+|=++- .+.+..+|..|..++...|.++++|-+-+.... .+++++
T Consensus 4 ~~ilV~~E~~~g~l~~~s~ell~~A~~La~~~g~~v~av~~G~~~~~--------------------~~~~~~------- 56 (217)
T 3ih5_A 4 NNLFVYCEIEEGIVADVSLELLTKGRSLANELNCQLEAVVAGTGLKE--------------------IEKQIL------- 56 (217)
T ss_dssp CCEEEECCEETTEECHHHHHHHHHHHHHHHHHTCCEEEEEEESCCTT--------------------THHHHG-------
T ss_pred ccEEEEEECcCCEECHHHHHHHHHHHHHHHhcCCeEEEEEECCCHHH--------------------HHHHHH-------
Confidence 457776664 478999999999998766888888776543110 111111
Q ss_pred hhcCCceEEEEEEcC-----C---HHHHHHHHHHHcCCCEEEEcCCC
Q 044284 94 TRRHIQCELVVLERQ-----D---VARALIEYVSQYGVETMLLGAPT 132 (421)
Q Consensus 94 ~~~gV~~e~vvleg~-----d---va~aIve~A~~~~idlIVmGs~g 132 (421)
..|+.- .+++++. + .+.+|.+.+++.+.|+|++|++.
T Consensus 57 -~~Gad~-v~~v~~~~~~~~~~~~~a~~l~~~i~~~~p~~Vl~g~t~ 101 (217)
T 3ih5_A 57 -PYGVDK-LHVFDAEGLYPYTSLPHTSILVNLFKEEQPQICLMGATV 101 (217)
T ss_dssp -GGTCSE-EEEEECGGGSSCCHHHHHHHHHHHHHHHCCSEEEEECSH
T ss_pred -hcCCCE-EEEecCcccccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 234332 2333321 1 57789999999999999999875
No 71
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=49.76 E-value=24 Score=30.96 Aligned_cols=65 Identities=15% Similarity=0.068 Sum_probs=45.8
Q ss_pred HHHHhhhcCCceEEEEEEcCCHHHHHHHHHHHcCCCEEEEcCCCCCCCcccccccccccccccchhcccCCCcceEEEEe
Q 044284 89 FRCYCTRRHIQCELVVLERQDVARALIEYVSQYGVETMLLGAPTKNGLSRSSFCRLFKASDTPGTVLKWAPDFCNVYIVS 168 (421)
Q Consensus 89 ~r~~c~~~gV~~e~vvleg~dva~aIve~A~~~~idlIVmGs~gr~~f~~~~~~r~~~~~sVa~~V~k~Ap~~C~V~VV~ 168 (421)
....|+..||+++..+.--+-..+.+.+|+++...+.||.|+-+-+.|- .-|.-.++ +||+-|+
T Consensus 18 a~~~l~~~gi~~dv~V~saHR~p~~~~~~~~~a~~~ViIa~AG~aa~Lp--------------gvva~~t~--~PVIgVP 81 (157)
T 2ywx_A 18 AVNILKEFGVEFEVRVASAHRTPELVEEIVKNSKADVFIAIAGLAAHLP--------------GVVASLTT--KPVIAVP 81 (157)
T ss_dssp HHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHCCCSEEEEEEESSCCHH--------------HHHHTTCS--SCEEEEE
T ss_pred HHHHHHHcCCCeEEEEEcccCCHHHHHHHHHhcCCCEEEEEcCchhhhH--------------HHHHhccC--CCEEEec
Confidence 3444455699999888776777889999999877788888886544443 22333345 8998887
Q ss_pred C
Q 044284 169 K 169 (421)
Q Consensus 169 k 169 (421)
-
T Consensus 82 ~ 82 (157)
T 2ywx_A 82 V 82 (157)
T ss_dssp E
T ss_pred C
Confidence 4
No 72
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group}
Probab=49.52 E-value=73 Score=32.87 Aligned_cols=82 Identities=13% Similarity=0.062 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhcCCceEEEEEEcCCHHH
Q 044284 33 HALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRHIQCELVVLERQDVAR 112 (421)
Q Consensus 33 ~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~gV~~e~vvleg~dva~ 112 (421)
.||..|++.+...|..|+.|+|..|....+ ..+ ... ..-..+-|..+..-+.+.|+.. +++. +++.+
T Consensus 54 ~AL~~A~~~a~~~~~pVl~vfildp~~~~~--~~~----~~r----~~FL~~sL~dL~~~L~~lG~~L--~v~~-G~p~~ 120 (506)
T 3umv_A 54 WALLHAAGLAAASASPLAVAFALFPRPFLL--SAR----RRQ----LGFLLRGLRRLAADAAARHLPF--FLFT-GGPAE 120 (506)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEECCCTTCGG--GCC----HHH----HHHHHHHHHHHHHHHHHTTCCE--EEES-SCTTH
T ss_pred HHHHHHHHhhhhcCCCEEEEEeccchhhcc--CCC----HHH----HHHHHHHHHHHHHHHHHcCCce--EEEe-cChHH
Confidence 688888887765677899999998753211 101 000 1123333555555666678765 3455 57888
Q ss_pred HHHHHHHHcCCCEEEE
Q 044284 113 ALIEYVSQYGVETMLL 128 (421)
Q Consensus 113 aIve~A~~~~idlIVm 128 (421)
. .+++++.+|+.|+.
T Consensus 121 v-~~L~~~~~a~~V~~ 135 (506)
T 3umv_A 121 I-PALVQRLGASTLVA 135 (506)
T ss_dssp H-HHHHHHTTCSEEEE
T ss_pred H-HHHHHhcCCCEEEe
Confidence 8 99999999999997
No 73
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=48.71 E-value=26 Score=31.22 Aligned_cols=62 Identities=21% Similarity=0.218 Sum_probs=42.3
Q ss_pred HHhhhcCCceEEEEEEcCCHHHHHHHHHHH---cCCCEEEEcCCCCCCCcccccccccccccccchhcccCCCcceEEEE
Q 044284 91 CYCTRRHIQCELVVLERQDVARALIEYVSQ---YGVETMLLGAPTKNGLSRSSFCRLFKASDTPGTVLKWAPDFCNVYIV 167 (421)
Q Consensus 91 ~~c~~~gV~~e~vvleg~dva~aIve~A~~---~~idlIVmGs~gr~~f~~~~~~r~~~~~sVa~~V~k~Ap~~C~V~VV 167 (421)
..|+..||+++..+.--+-..+.+.+|+++ .+++.||.|+-+-+.|- .-|.-.++ +||+-|
T Consensus 32 ~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lp--------------gvvA~~t~--~PVIgV 95 (170)
T 1xmp_A 32 DILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLP--------------GMVAAKTN--LPVIGV 95 (170)
T ss_dssp HHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHH--------------HHHHTTCC--SCEEEE
T ss_pred HHHHHcCCCEEEEEEeccCCHHHHHHHHHHHHhCCCcEEEEECCchhhhH--------------HHHHhccC--CCEEEe
Confidence 334456999998777666667888888875 46898888886544443 22333345 899888
Q ss_pred e
Q 044284 168 S 168 (421)
Q Consensus 168 ~ 168 (421)
+
T Consensus 96 P 96 (170)
T 1xmp_A 96 P 96 (170)
T ss_dssp E
T ss_pred e
Confidence 6
No 74
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Probab=47.92 E-value=83 Score=32.01 Aligned_cols=88 Identities=8% Similarity=-0.088 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhcCCceEEEEEEcCCHHH
Q 044284 33 HALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRHIQCELVVLERQDVAR 112 (421)
Q Consensus 33 ~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~gV~~e~vvleg~dva~ 112 (421)
.||..|++ .+..++.|+|.++................- ..-..+-|..+..-+.+.|+.+. ++. +++.+
T Consensus 22 ~aL~~A~~----~~~~v~~vfi~dp~~~~~~~~~~~~~~~~r----~~Fl~~sL~~L~~~L~~~G~~L~--v~~-g~~~~ 90 (489)
T 1np7_A 22 EPLHRALK----SGLAITAVYCYDPRQFAQTHQGFAKTGPWR----SNFLQQSVQNLAESLQKVGNKLL--VTT-GLPEQ 90 (489)
T ss_dssp HHHHHHHH----TTSEEEEEEEECGGGGSBCTTSCBSSCHHH----HHHHHHHHHHHHHHHHHTTCCEE--EEE-SCHHH
T ss_pred HHHHHHHh----cCCCEEEEEEECchhhcccccccCCCCHHH----HHHHHHHHHHHHHHHHHCCCcEE--EEE-CCHHH
Confidence 46666654 456788999987643210000000000000 01233345556666667787753 445 48999
Q ss_pred HHHHHHHHcCCCEEEEcCC
Q 044284 113 ALIEYVSQYGVETMLLGAP 131 (421)
Q Consensus 113 aIve~A~~~~idlIVmGs~ 131 (421)
.|.+++++++|+.|+.-..
T Consensus 91 ~l~~l~~~~~~~~V~~~~~ 109 (489)
T 1np7_A 91 VIPQIAKQINAKTIYYHRE 109 (489)
T ss_dssp HHHHHHHHTTEEEEEEECC
T ss_pred HHHHHHHHcCCCEEEEecc
Confidence 9999999999999888644
No 75
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=47.50 E-value=77 Score=29.43 Aligned_cols=94 Identities=16% Similarity=0.079 Sum_probs=54.2
Q ss_pred CEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 044284 19 KIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRHI 98 (421)
Q Consensus 19 ~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~gV 98 (421)
.+++|.+.|-+.|-.|+-++.+ .|-.|+.|+..-+......+ + +. .-+..++..|...||
T Consensus 5 MKvvvl~SGGkDSs~al~~l~~----~G~eV~~L~~~~~~~~~s~~---------~-h~------~~~e~a~~~A~~LGI 64 (237)
T 3rjz_A 5 ADVAVLYSGGKDSNYALYWAIK----NRFSVKFLVTMVSENEESYM---------Y-HT------INANLTDLQARALGI 64 (237)
T ss_dssp SEEEEECCSSHHHHHHHHHHHH----TTCEEEEEEEEECC------------------C------CSSSHHHHHHHHHTC
T ss_pred CEEEEEecCcHHHHHHHHHHHH----cCCeEEEEEEEcCCCCCccc---------c-CC------ccHHHHHHHHHHcCC
Confidence 4899999999999988876654 57777766544322100000 0 00 001223445666788
Q ss_pred ceEEEEEEcC--CHHHHHHHHHHHcCCCEEEEcCCC
Q 044284 99 QCELVVLERQ--DVARALIEYVSQYGVETMLLGAPT 132 (421)
Q Consensus 99 ~~e~vvleg~--dva~aIve~A~~~~idlIVmGs~g 132 (421)
+...+-+.+. +-.+.+.+..++.+++.+|.|.--
T Consensus 65 pl~~v~~~g~~~~e~e~l~~~l~~~~i~~vv~Gdi~ 100 (237)
T 3rjz_A 65 PLVKGFTQGEKEKEVEDLKRVLSGLKIQGIVAGALA 100 (237)
T ss_dssp CEEEEEC------CHHHHHHHHTTSCCSEEECC---
T ss_pred CEEEEECCCCchHHHHHHHHHHHhcCCcEEEECCcc
Confidence 8876655532 224667777777899999999863
No 76
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=46.78 E-value=27 Score=30.84 Aligned_cols=64 Identities=19% Similarity=0.229 Sum_probs=43.2
Q ss_pred HHHHhhhcCCceEEEEEEcCCHHHHHHHHHHH---cCCCEEEEcCCCCCCCcccccccccccccccchhcccCCCcceEE
Q 044284 89 FRCYCTRRHIQCELVVLERQDVARALIEYVSQ---YGVETMLLGAPTKNGLSRSSFCRLFKASDTPGTVLKWAPDFCNVY 165 (421)
Q Consensus 89 ~r~~c~~~gV~~e~vvleg~dva~aIve~A~~---~~idlIVmGs~gr~~f~~~~~~r~~~~~sVa~~V~k~Ap~~C~V~ 165 (421)
....|+..||+++..+.--+-..+.+.+|+++ .+++.||.|+-+-+.|- .-|.-.++ +||+
T Consensus 22 a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lp--------------gvvA~~t~--~PVI 85 (163)
T 3ors_A 22 SCNMLDYFEIPYEKQVVSAHRTPKMMVQFASEARERGINIIIAGAGGAAHLP--------------GMVASLTT--LPVI 85 (163)
T ss_dssp HHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHH--------------HHHHHHCS--SCEE
T ss_pred HHHHHHHcCCCEEEEEECCcCCHHHHHHHHHHHHhCCCcEEEEECCchhhhH--------------HHHHhccC--CCEE
Confidence 33344556999998877666677888888764 57898888886544443 22333455 8998
Q ss_pred EEe
Q 044284 166 IVS 168 (421)
Q Consensus 166 VV~ 168 (421)
-|+
T Consensus 86 gVP 88 (163)
T 3ors_A 86 GVP 88 (163)
T ss_dssp EEE
T ss_pred Eee
Confidence 886
No 77
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=46.69 E-value=26 Score=31.50 Aligned_cols=62 Identities=21% Similarity=0.345 Sum_probs=42.7
Q ss_pred HHhhhcCCceEEEEEEcCCHHHHHHHHHHH---cCCCEEEEcCCCCCCCcccccccccccccccchhcccCCCcceEEEE
Q 044284 91 CYCTRRHIQCELVVLERQDVARALIEYVSQ---YGVETMLLGAPTKNGLSRSSFCRLFKASDTPGTVLKWAPDFCNVYIV 167 (421)
Q Consensus 91 ~~c~~~gV~~e~vvleg~dva~aIve~A~~---~~idlIVmGs~gr~~f~~~~~~r~~~~~sVa~~V~k~Ap~~C~V~VV 167 (421)
..|+..||+++..|.--+-..+.+.+|+++ .+++.||.|+-+-+.|- .-|.-.++ +||+-|
T Consensus 42 ~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lp--------------gvvA~~t~--~PVIgV 105 (182)
T 1u11_A 42 ALLTELEIPHETLIVSAHRTPDRLADYARTAAERGLNVIIAGAGGAAHLP--------------GMCAAWTR--LPVLGV 105 (182)
T ss_dssp HHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHH--------------HHHHHHCS--SCEEEE
T ss_pred HHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCchhhhH--------------HHHHhccC--CCEEEe
Confidence 344456999998877666677888888875 46898888886544443 22333345 899888
Q ss_pred e
Q 044284 168 S 168 (421)
Q Consensus 168 ~ 168 (421)
+
T Consensus 106 P 106 (182)
T 1u11_A 106 P 106 (182)
T ss_dssp E
T ss_pred e
Confidence 6
No 78
>2bzb_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative, regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=45.65 E-value=31 Score=25.48 Aligned_cols=39 Identities=18% Similarity=0.188 Sum_probs=35.7
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044284 283 MEDVEDDVKRLKMELKQTMDMYNAACKEALAAKQKAVEL 321 (421)
Q Consensus 283 ~~~~eaEm~rLrlELk~tm~my~~AckEa~~Akqk~~eL 321 (421)
++++..+++.+|.||-+.-.-|.-.-.++|..+|.+..|
T Consensus 3 ~~~L~~~IE~kR~eL~~l~~k~Gl~~~~vI~~SQeLD~L 41 (62)
T 2bzb_A 3 MGQLKNKIENKKKELIQLVARHGLDHDKVLLFSRDLDKL 41 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 567889999999999999999999999999999998766
No 79
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=45.43 E-value=26 Score=31.25 Aligned_cols=63 Identities=24% Similarity=0.311 Sum_probs=41.5
Q ss_pred HHHhhhcCCceEEEEEEcCCHHHHHHHHH---HHcCCCEEEEcCCCCCCCcccccccccccccccchhcccCCCcceEEE
Q 044284 90 RCYCTRRHIQCELVVLERQDVARALIEYV---SQYGVETMLLGAPTKNGLSRSSFCRLFKASDTPGTVLKWAPDFCNVYI 166 (421)
Q Consensus 90 r~~c~~~gV~~e~vvleg~dva~aIve~A---~~~~idlIVmGs~gr~~f~~~~~~r~~~~~sVa~~V~k~Ap~~C~V~V 166 (421)
...|+..||+++..+.--+-..+.+.+|+ .+.+++.||.|+-+-+.|- .-|.-.++ +||+-
T Consensus 27 ~~~L~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lp--------------gvvA~~t~--~PVIg 90 (174)
T 3lp6_A 27 AAALAEFDIPAEVRVVSAHRTPEAMFSYARGAAARGLEVIIAGAGGAAHLP--------------GMVAAATP--LPVIG 90 (174)
T ss_dssp HHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHHHTCCEEEEEEESSCCHH--------------HHHHHHCS--SCEEE
T ss_pred HHHHHHcCCCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEecCchhhhH--------------HHHHhccC--CCEEE
Confidence 33444569999887776565566777775 5578999988886544443 22333455 89988
Q ss_pred Ee
Q 044284 167 VS 168 (421)
Q Consensus 167 V~ 168 (421)
|+
T Consensus 91 VP 92 (174)
T 3lp6_A 91 VP 92 (174)
T ss_dssp EE
T ss_pred ee
Confidence 86
No 80
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=44.84 E-value=1.8e+02 Score=26.36 Aligned_cols=36 Identities=19% Similarity=0.303 Sum_probs=26.0
Q ss_pred CChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHh
Q 044284 281 QNMEDVEDDVKRLKMELKQTMDMYNAACKEALAAKQKAVELEKWKMKEE 329 (421)
Q Consensus 281 ~~~~~~eaEm~rLrlELk~tm~my~~AckEa~~Akqk~~eL~~~~~EE~ 329 (421)
-+.++|..|++++--..+|- |+.||.|+...-.||.
T Consensus 8 l~~~~v~~~i~~m~~fI~qE-------------A~eKA~EI~~kAeeE~ 43 (233)
T 4efa_E 8 LTPNQVNDELNKMQAFIRKE-------------AEEKAKEIQLKADQEY 43 (233)
T ss_dssp SCHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHH
Confidence 44578888888887777663 7888888876655554
No 81
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Probab=44.79 E-value=86 Score=32.11 Aligned_cols=96 Identities=10% Similarity=0.021 Sum_probs=57.3
Q ss_pred CEEEEccCCC--HHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 044284 19 KIVAVAIDKD--KFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRR 96 (421)
Q Consensus 19 ~~IlVAVDgS--~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~ 96 (421)
..++|=+-.| -.-..||..|++. + .++.|+|..+..... ... .... ..-..+-|..+..-+.+.
T Consensus 12 ~~~l~WfrrDLRl~DN~aL~~A~~~----~-~v~pvfi~dp~~~~~----~~~--~~~~---~~fl~~sL~~L~~~L~~~ 77 (509)
T 1u3d_A 12 GCSIVWFRRDLRVEDNPALAAAVRA----G-PVIALFVWAPEEEGH----YHP--GRVS---RWWLKNSLAQLDSSLRSL 77 (509)
T ss_dssp -CEEEEESSCCCSTTCHHHHHHHHH----S-CEEEEEEECGGGGTT----CCC--CHHH---HHHHHHHHHHHHHHHHHT
T ss_pred CcEEEEECCCCccchhHHHHHHHhC----C-CEEEEEEECchhccc----CCc--chHH---HHHHHHHHHHHHHHHHHC
Confidence 3455555554 1223577777764 3 477888887643210 000 0000 112344456666666777
Q ss_pred CCceEEEEEEcCCHHHHHHHHHHHcCCCEEEEcC
Q 044284 97 HIQCELVVLERQDVARALIEYVSQYGVETMLLGA 130 (421)
Q Consensus 97 gV~~e~vvleg~dva~aIve~A~~~~idlIVmGs 130 (421)
|+.+ +++.++++.+.|.+++++++|+.|+.-.
T Consensus 78 G~~L--~v~~~g~~~~~l~~l~~~~~~~~V~~~~ 109 (509)
T 1u3d_A 78 GTCL--ITKRSTDSVASLLDVVKSTGASQIFFNH 109 (509)
T ss_dssp TCCE--EEEECSCHHHHHHHHHHHHTCCEEEEEC
T ss_pred CCeE--EEEeCCCHHHHHHHHHHHcCCCEEEEec
Confidence 8875 4455568999999999999999998754
No 82
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Probab=44.42 E-value=59 Score=33.76 Aligned_cols=100 Identities=7% Similarity=0.015 Sum_probs=60.1
Q ss_pred EEEEccCCC--HHHHHHHHHHHHHHhc--CCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhh
Q 044284 20 IVAVAIDKD--KFSQHALKWAADNILS--RHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTR 95 (421)
Q Consensus 20 ~IlVAVDgS--~~S~~ALkwAid~a~~--~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~ 95 (421)
.|+|=+-+| -.--.||..|++.... .+..|+.|+|..+...... ... . ..-.-..+-|..+..-+.+
T Consensus 30 ~vl~WfrrDLRl~DN~aL~~A~~~~~~~~~~~pv~~vfi~dp~~~~~~---~~~-~-----~r~~Fl~~sL~~L~~~L~~ 100 (543)
T 2wq7_A 30 TLVHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDWM---QVG-A-----NRWRFLQQTLEDLDNQLRK 100 (543)
T ss_dssp EEEEEESSCCCSTTCHHHHHHHHHHHHSTTTEEEEEEEEECTTGGGCT---TSC-H-----HHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCcCcchHHHHHHHHHhCccccCCCeEEEEEEECchhhccc---CCC-H-----HHHHHHHHHHHHHHHHHHH
Confidence 335555555 1223678888876644 3556889999987532100 000 0 0001223345556666666
Q ss_pred cCCceEEEEEEcCCHHHHHHHHHHHcCCCEEEEcCC
Q 044284 96 RHIQCELVVLERQDVARALIEYVSQYGVETMLLGAP 131 (421)
Q Consensus 96 ~gV~~e~vvleg~dva~aIve~A~~~~idlIVmGs~ 131 (421)
.|+.+. ++. +++.+.|.+++++++|+.|+.-..
T Consensus 101 ~G~~L~--v~~-g~~~~~l~~l~~~~~~~~v~~~~~ 133 (543)
T 2wq7_A 101 LNSRLF--VVR-GKPAEVFPRIFKSWRVEMLTFETD 133 (543)
T ss_dssp TTCCCE--EEE-SCHHHHHHHHHHHTTEEEEEEECC
T ss_pred CCCeEE--EEe-CCHHHHHHHHHHHcCCCEEEEecC
Confidence 787763 344 479999999999999999988643
No 83
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=44.32 E-value=24 Score=31.03 Aligned_cols=64 Identities=14% Similarity=0.124 Sum_probs=42.8
Q ss_pred HHHHhhhcCCceEEEEEEcCCHHHHHHHHHHHc----CCCEEEEcCCCCCCCcccccccccccccccchhcccCCCcceE
Q 044284 89 FRCYCTRRHIQCELVVLERQDVARALIEYVSQY----GVETMLLGAPTKNGLSRSSFCRLFKASDTPGTVLKWAPDFCNV 164 (421)
Q Consensus 89 ~r~~c~~~gV~~e~vvleg~dva~aIve~A~~~----~idlIVmGs~gr~~f~~~~~~r~~~~~sVa~~V~k~Ap~~C~V 164 (421)
....|+..||+++..+.--+-..+.+.+|+++. +++.||.|+-+-+.|- .-|.-.++ +||
T Consensus 21 a~~~l~~~gi~~ev~V~saHR~p~~~~~~~~~a~~~~~~~ViIa~AG~aa~Lp--------------gvvA~~t~--~PV 84 (159)
T 3rg8_A 21 IASELKTFGIEYAIRIGSAHKTAEHVVSMLKEYEALDRPKLYITIAGRSNALS--------------GFVDGFVK--GAT 84 (159)
T ss_dssp HHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHHHTSCSCEEEEEECCSSCCHH--------------HHHHHHSS--SCE
T ss_pred HHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHhhhcCCCcEEEEECCchhhhH--------------HHHHhccC--CCE
Confidence 333444569999987776666778888887542 6899999886544443 22333455 888
Q ss_pred EEEe
Q 044284 165 YIVS 168 (421)
Q Consensus 165 ~VV~ 168 (421)
+-|+
T Consensus 85 IgVP 88 (159)
T 3rg8_A 85 IACP 88 (159)
T ss_dssp EECC
T ss_pred EEee
Confidence 8876
No 84
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=44.28 E-value=3e+02 Score=31.13 Aligned_cols=17 Identities=24% Similarity=0.350 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHhH
Q 044284 307 ACKEALAAKQKAVELEK 323 (421)
Q Consensus 307 AckEa~~Akqk~~eL~~ 323 (421)
..+|.-.+++++.+|..
T Consensus 975 ~~~e~~~~~~~v~~L~~ 991 (1080)
T 2dfs_A 975 SEEEAKNATNRVLSLQE 991 (1080)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555555554433
No 85
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=44.00 E-value=56 Score=32.50 Aligned_cols=34 Identities=18% Similarity=0.348 Sum_probs=23.4
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044284 288 DDVKRLK-MELKQTMDMYNAACKEALAAKQKAVEL 321 (421)
Q Consensus 288 aEm~rLr-lELk~tm~my~~AckEa~~Akqk~~eL 321 (421)
.++.+.= .+|..+..-|..+|+|+-.|++|..+.
T Consensus 126 k~~~k~~~~~lekaKk~Y~~~cke~e~A~~k~~~~ 160 (406)
T 4dyl_A 126 QELTKTHSQDIEKLKSQYRALARDSAQAKRKYQEA 160 (406)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344433 566667788999999999999986554
No 86
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=43.89 E-value=27 Score=31.39 Aligned_cols=63 Identities=21% Similarity=0.274 Sum_probs=42.3
Q ss_pred HHHhhhcCCceEEEEEEcCCHHHHHHHHHHH---cCCCEEEEcCCCCCCCcccccccccccccccchhcccCCCcceEEE
Q 044284 90 RCYCTRRHIQCELVVLERQDVARALIEYVSQ---YGVETMLLGAPTKNGLSRSSFCRLFKASDTPGTVLKWAPDFCNVYI 166 (421)
Q Consensus 90 r~~c~~~gV~~e~vvleg~dva~aIve~A~~---~~idlIVmGs~gr~~f~~~~~~r~~~~~sVa~~V~k~Ap~~C~V~V 166 (421)
...|+..||+++..+.--+-..+.+.+|+++ .+++.||.|+-+-+.|. .-|.-.++ +||+-
T Consensus 33 ~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lp--------------gvvA~~t~--~PVIg 96 (183)
T 1o4v_A 33 AEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVIIAGAGGAAHLP--------------GMVASITH--LPVIG 96 (183)
T ss_dssp HHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHH--------------HHHHHHCS--SCEEE
T ss_pred HHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCcccccH--------------HHHHhccC--CCEEE
Confidence 3344456999998877666667788888764 56898888886544443 22333455 89988
Q ss_pred Ee
Q 044284 167 VS 168 (421)
Q Consensus 167 V~ 168 (421)
|+
T Consensus 97 VP 98 (183)
T 1o4v_A 97 VP 98 (183)
T ss_dssp EE
T ss_pred ee
Confidence 86
No 87
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=43.37 E-value=1.4e+02 Score=24.72 Aligned_cols=23 Identities=9% Similarity=0.296 Sum_probs=18.7
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHH
Q 044284 283 MEDVEDDVKRLKMELKQTMDMYN 305 (421)
Q Consensus 283 ~~~~eaEm~rLrlELk~tm~my~ 305 (421)
.|=+.-||+|||.|--+...+|.
T Consensus 34 sDPL~~ELeRLr~~~d~~~K~HE 56 (115)
T 3vem_A 34 NDPFLHELEKLRRESENSKKTFE 56 (115)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHH
Confidence 36677799999999988877774
No 88
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=42.14 E-value=1.7e+02 Score=37.27 Aligned_cols=6 Identities=33% Similarity=0.462 Sum_probs=2.6
Q ss_pred HHHHHH
Q 044284 406 VLILFY 411 (421)
Q Consensus 406 ~~~~~~ 411 (421)
+.|+-|
T Consensus 2111 aafisY 2116 (3245)
T 3vkg_A 2111 SAFLAY 2116 (3245)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 344444
No 89
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=40.35 E-value=1.8e+02 Score=27.88 Aligned_cols=35 Identities=26% Similarity=0.422 Sum_probs=26.5
Q ss_pred hcHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Q 044284 284 EDVEDDVKRLKM-------ELKQTMDMYNAACKEALAAKQKA 318 (421)
Q Consensus 284 ~~~eaEm~rLrl-------ELk~tm~my~~AckEa~~Akqk~ 318 (421)
.+++.+|+++.. +|......|..+|+|+-.|+++.
T Consensus 139 K~~~~~~~k~~k~~~~~~~~l~KaKk~Y~~~c~e~e~a~~~~ 180 (350)
T 3aco_A 139 KEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISRE 180 (350)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHHHTTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777654 45666678999999998888764
No 90
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=40.33 E-value=1.2e+02 Score=31.00 Aligned_cols=17 Identities=18% Similarity=0.376 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 044284 288 DDVKRLKMELKQTMDMY 304 (421)
Q Consensus 288 aEm~rLrlELk~tm~my 304 (421)
..+..++.++..-...|
T Consensus 477 ~~l~~~~~~i~~~~~~~ 493 (597)
T 3oja_B 477 QLLQGLHAEIDTNLRRY 493 (597)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhhhhhc
Confidence 33344444444433333
No 91
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana}
Probab=39.41 E-value=34 Score=35.66 Aligned_cols=88 Identities=11% Similarity=0.121 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhcCCCEEEEEEEecCCCCCCcc----ccccchHHHHHHHHHHHHHHHHHHHHHHhhhcCCceEEEEEEcC
Q 044284 33 HALKWAADNILSRHQTIKLVHVIQKSHSNNQY----SVGISEELIEQQQHDIHAMEVFLPFRCYCTRRHIQCELVVLERQ 108 (421)
Q Consensus 33 ~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~----~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~gV~~e~vvleg~ 108 (421)
.||..|+ ..+..|+.|+|.+|....+.+ .+.......- ..-..+-|..+..-+.+.|+.. +++. +
T Consensus 21 ~AL~~A~----~~~~~vlpvfi~dp~~~~~~~~~~~~g~~~~g~~r----~~Fl~~sL~~L~~~L~~~G~~L--~v~~-G 89 (537)
T 3fy4_A 21 PALEYAS----KGSEFMYPVFVIDPHYMESDPSAFSPGSSRAGVNR----IRFLLESLKDLDSSLKKLGSRL--LVFK-G 89 (537)
T ss_dssp HHHHHHH----TTCSCEEEEEEECHHHHSCCTTSSSSBCSSCBHHH----HHHHHHHHHHHHHHHHHTTCCC--EEEE-S
T ss_pred HHHHHHH----hcCCCEEEEEEeChhhhcccccccccccccCCHHH----HHHHHHHHHHHHHHHHHcCCce--EEEE-C
Confidence 3454444 346779999999763211000 0000000000 0122333555555666677765 3445 4
Q ss_pred CHHHHHHHHHHHcCCCEEEEcCC
Q 044284 109 DVARALIEYVSQYGVETMLLGAP 131 (421)
Q Consensus 109 dva~aIve~A~~~~idlIVmGs~ 131 (421)
++.+.|.+++++++|+.|+.-..
T Consensus 90 ~~~~vl~~L~~~~~~~~V~~n~~ 112 (537)
T 3fy4_A 90 EPGEVLVRCLQEWKVKRLCFEYD 112 (537)
T ss_dssp CHHHHHHHHHTTSCEEEEEECCC
T ss_pred CHHHHHHHHHHHcCCCEEEEecc
Confidence 89999999999999999988643
No 92
>2q2f_A Selenoprotein S; anti-parallel coiled-coil, endoplasmic reticulum, membrane, selenocysteine, transmembrane, structural genomics; HET: MSE; 1.50A {Homo sapiens}
Probab=39.06 E-value=63 Score=25.47 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHhHHhHHHhhhhhh
Q 044284 309 KEALAAKQKAVELEKWKMKEEKRLKE 334 (421)
Q Consensus 309 kEa~~Akqk~~eL~~~~~EE~~k~ee 334 (421)
-+.|-+.|-+.+..+.+|.|+.--+-
T Consensus 39 Pd~vv~RQEAl~aaRlRMQEeldAqA 64 (89)
T 2q2f_A 39 PDVVVKRQEALAAARLKMQEELNAQV 64 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777888888888888754333
No 93
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=38.92 E-value=52 Score=30.36 Aligned_cols=35 Identities=6% Similarity=-0.096 Sum_probs=26.4
Q ss_pred CEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecC
Q 044284 19 KIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQK 57 (421)
Q Consensus 19 ~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~ 57 (421)
.+|+|++.|.+.|.-.+..+.+.. ..|.+||+-..
T Consensus 46 ~~v~va~SGG~DS~vLL~ll~~~~----~~v~vv~idtg 80 (252)
T 2o8v_A 46 GEYVLSSSFGIQAAVSLHLVNQIR----PDIPVILTDTG 80 (252)
T ss_dssp SCEEEECCCSTTHHHHHHHHHHHS----TTCEEEECCCS
T ss_pred CCEEEEeCCCHHHHHHHHHHHHhC----CCCeEEEecCC
Confidence 489999999999888776665553 35778887654
No 94
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=38.20 E-value=2e+02 Score=24.93 Aligned_cols=95 Identities=25% Similarity=0.262 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHhhhhhhhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044284 295 MELKQTMDMYNAACKEALAAKQKAVELEKWKMKEEKRLKETQMGEERGKAKIKAAIEAAEAAQKIAKLEVQKRVNAEAKA 374 (421)
Q Consensus 295 lELk~tm~my~~AckEa~~Akqk~~eL~~~~~EE~~k~eea~~~eE~EKak~~aA~eaaE~ak~~ae~EaqkR~~aE~kA 374 (421)
-|-+..|+.|..|-.-.-+|++++..|+..--+-+.||.+.-= .+-+=++.+++++.+..=---+..-.++--.|-.||
T Consensus 55 ~eAq~Atd~ye~ai~n~~sA~~~~d~lekKl~~aq~kL~~L~P-~~P~Yak~~a~~~q~~~d~~~~~~~~~kA~~A~~~a 133 (158)
T 3tul_A 55 GEAQEATDLYEASIKKTDTAKSVYDAATKKLTQAQNKLQSLDP-ADPGYAQAEAAVEQAGKEATEAKEALDKATDATVKA 133 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcCCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556678888888888888888888887664333444433221 113333333333322111111222334555666777
Q ss_pred hHHHHHHHHHHHHHhc
Q 044284 375 LKEAEEKRKLLDALWQ 390 (421)
Q Consensus 375 ~~e~~ek~k~~~al~~ 390 (421)
.-.+.+|.+..|.|++
T Consensus 134 ~~~a~~k~~~~d~i~~ 149 (158)
T 3tul_A 134 GTDAKAKAEKADNILT 149 (158)
T ss_dssp HHHHHHHHHTCCCC--
T ss_pred hhHHHHHHHHHhhHHH
Confidence 7778888777776654
No 95
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Probab=37.95 E-value=1.7e+02 Score=30.04 Aligned_cols=103 Identities=14% Similarity=0.099 Sum_probs=59.3
Q ss_pred CCEEEEccCCC-H-HHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccc-cccchHHHHHHHHHHHHHHHHHHHHHHhh
Q 044284 18 EKIVAVAIDKD-K-FSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYS-VGISEELIEQQQHDIHAMEVFLPFRCYCT 94 (421)
Q Consensus 18 ~~~IlVAVDgS-~-~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~elL~~~r~~c~ 94 (421)
...++|=+-+| . .-..||..|++ .+..|+.|+|.++........ ........- ..-..+-|..+..-+.
T Consensus 39 ~~~~l~WfrrDLRl~DN~AL~~A~~----~~~~v~~vfi~dp~~~~~~~~~~~~~~~~~r----~~Fl~~sL~~L~~~L~ 110 (525)
T 2j4d_A 39 KGVTILWFRNDLRVLDNDALYKAWS----SSDTILPVYCLDPRLFHTTHFFNFPKTGALR----GGFLMECLVDLRKNLM 110 (525)
T ss_dssp CCEEEEEESSCCCSTTCHHHHHHHH----TCSEEEEEEEECGGGGSBCTTTCCBSSCHHH----HHHHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCcCcchhHHHHHHHh----cCCcEEEEEEECchhhcccccccCCCCCHHH----HHHHHHHHHHHHHHHH
Confidence 34566666665 2 22256666655 356799999987643210000 000000000 0122334555666666
Q ss_pred hcCCceEEEEEEcCCHHHHHHHHHHHcCCCEEEEcCC
Q 044284 95 RRHIQCELVVLERQDVARALIEYVSQYGVETMLLGAP 131 (421)
Q Consensus 95 ~~gV~~e~vvleg~dva~aIve~A~~~~idlIVmGs~ 131 (421)
+.|+.+. ++. +++.+.|.+++++++|+.|+.-..
T Consensus 111 ~~G~~L~--v~~-g~~~~~l~~l~~~~~~~~V~~~~~ 144 (525)
T 2j4d_A 111 KRGLNLL--IRS-GKPEEILPSLAKDFGARTVFAHKE 144 (525)
T ss_dssp HTTCCCE--EEE-SCHHHHHHHHHHHHTCSEEEEECC
T ss_pred HcCCeEE--EEe-CCHHHHHHHHHHHcCCCEEEEecc
Confidence 7788763 444 589999999999999999988643
No 96
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=36.19 E-value=24 Score=29.15 Aligned_cols=21 Identities=33% Similarity=0.529 Sum_probs=18.9
Q ss_pred CCChhcHHHHHHHHHHHHHHH
Q 044284 280 SQNMEDVEDDVKRLKMELKQT 300 (421)
Q Consensus 280 s~~~~~~eaEm~rLrlELk~t 300 (421)
..+++++.+|+.||++|-|+.
T Consensus 7 ~~t~EeLaaeL~kLqmENK~L 27 (110)
T 2oa5_A 7 DKTYEEMVKEVERLKLENKTL 27 (110)
T ss_dssp CSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHH
Confidence 567899999999999998886
No 97
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=36.09 E-value=40 Score=26.89 Aligned_cols=21 Identities=24% Similarity=0.574 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHcCCCEEEEcC
Q 044284 110 VARALIEYVSQYGVETMLLGA 130 (421)
Q Consensus 110 va~aIve~A~~~~idlIVmGs 130 (421)
..+.|.+++++++++.||+|-
T Consensus 39 ~~~~l~~li~e~~v~~iVvGl 59 (98)
T 1iv0_A 39 DVEALLDFVRREGLGKLVVGL 59 (98)
T ss_dssp HHHHHHHHHHHHTCCEEEEEC
T ss_pred HHHHHHHHHHHcCCCEEEEee
Confidence 467899999999999999994
No 98
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=36.09 E-value=2.3e+02 Score=29.19 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 044284 286 VEDDVKRLKMELKQTMDMYNAACKE 310 (421)
Q Consensus 286 ~eaEm~rLrlELk~tm~my~~AckE 310 (421)
..+|+.|.+..-.+...-|..+-.|
T Consensus 14 yq~elarvqkana~aka~Ye~~~ae 38 (497)
T 3iox_A 14 YQTELARVQKANADAKAAYEAAVAA 38 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666555443
No 99
>2c0s_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=34.46 E-value=32 Score=25.60 Aligned_cols=40 Identities=20% Similarity=0.291 Sum_probs=35.8
Q ss_pred ChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044284 282 NMEDVEDDVKRLKMELKQTMDMYNAACKEALAAKQKAVEL 321 (421)
Q Consensus 282 ~~~~~eaEm~rLrlELk~tm~my~~AckEa~~Akqk~~eL 321 (421)
..+++..+++.+|.||-+.-.-|.-.-.++|..+|.+..|
T Consensus 2 ~~~~L~~~IE~kR~eL~~l~~k~Gl~~~~vI~~SQeLD~L 41 (64)
T 2c0s_A 2 NVTKLNDRIEAKKKELIYLVEKYGFTHHKVISFSQELDRL 41 (64)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3567889999999999999999999999999999998766
No 100
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} SCOP: c.26.2.0
Probab=34.16 E-value=72 Score=29.55 Aligned_cols=37 Identities=5% Similarity=0.013 Sum_probs=30.0
Q ss_pred CCEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecC
Q 044284 18 EKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQK 57 (421)
Q Consensus 18 ~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~ 57 (421)
..+|+|++.|...|--++.++.+.+ |..++.+|+...
T Consensus 26 ~~~vvv~lSGGiDSsv~a~l~~~~~---g~~v~av~~~~~ 62 (249)
T 3p52_A 26 SQGVVLGLSGGIDSALVATLCKRAL---KENVFALLMPTQ 62 (249)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHHH---TTSEEEEECCSC
T ss_pred CCCEEEEcCCCHHHHHHHHHHHHHc---CCcEEEEEecCC
Confidence 5789999999998888888877754 567888888644
No 101
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A
Probab=33.04 E-value=4e+02 Score=26.96 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=16.5
Q ss_pred CCChhcHHHHHHHHHHHHHHHHHH
Q 044284 280 SQNMEDVEDDVKRLKMELKQTMDM 303 (421)
Q Consensus 280 s~~~~~~eaEm~rLrlELk~tm~m 303 (421)
.-+.++++.++..|+..|+.....
T Consensus 291 kv~~~~l~~~~~~L~~~l~~v~~~ 314 (483)
T 2j1d_G 291 KVNMTELDKEISTLRSGLKAVETE 314 (483)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHH
Confidence 345688888888888776655433
No 102
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=32.28 E-value=42 Score=35.25 Aligned_cols=25 Identities=12% Similarity=0.086 Sum_probs=20.3
Q ss_pred EEEEccCCCHHHHHHHHHHHHHHhc
Q 044284 20 IVAVAIDKDKFSQHALKWAADNILS 44 (421)
Q Consensus 20 ~IlVAVDgS~~S~~ALkwAid~a~~ 44 (421)
.+-|.||.+..++..+.-.+..+.-
T Consensus 15 t~e~~vd~~tt~~ell~~V~~~LgL 39 (575)
T 2i1j_A 15 ELEFAIQQTTTGKQLFDQVVKTIGL 39 (575)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHHTC
T ss_pred eEEEEECCCCCHHHHHHHHHHHcCC
Confidence 4568999998889999888888754
No 103
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=32.11 E-value=2.1e+02 Score=27.11 Aligned_cols=84 Identities=13% Similarity=0.139 Sum_probs=53.1
Q ss_pred CCCEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 044284 17 REKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRR 96 (421)
Q Consensus 17 ~~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~ 96 (421)
...+|+|-+.|+.++..||-++...- ..+.+|.+|-.-++. + +.+|.+.
T Consensus 89 ~~~ri~vl~Sg~g~~l~~ll~~~~~g-~l~~~i~~Visn~~~-----------------------~-------~~~A~~~ 137 (286)
T 3n0v_A 89 HRPKVVIMVSKADHCLNDLLYRQRIG-QLGMDVVAVVSNHPD-----------------------L-------EPLAHWH 137 (286)
T ss_dssp CCCEEEEEESSCCHHHHHHHHHHHTT-SSCCEEEEEEESSST-----------------------T-------HHHHHHT
T ss_pred CCcEEEEEEeCCCCCHHHHHHHHHCC-CCCcEEEEEEeCcHH-----------------------H-------HHHHHHc
Confidence 35689999999988888888876532 123555554333221 0 1235677
Q ss_pred CCceEEEEEEcCCH---HHHHHHHHHHcCCCEEEEcCC
Q 044284 97 HIQCELVVLERQDV---ARALIEYVSQYGVETMLLGAP 131 (421)
Q Consensus 97 gV~~e~vvleg~dv---a~aIve~A~~~~idlIVmGs~ 131 (421)
||++..+-....+- -.++++..++.++|+||+..-
T Consensus 138 gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivla~y 175 (286)
T 3n0v_A 138 KIPYYHFALDPKDKPGQERKVLQVIEETGAELVILARY 175 (286)
T ss_dssp TCCEEECCCBTTBHHHHHHHHHHHHHHHTCSEEEESSC
T ss_pred CCCEEEeCCCcCCHHHHHHHHHHHHHhcCCCEEEeccc
Confidence 99876432111111 247899999999999999754
No 104
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Probab=30.84 E-value=1.6e+02 Score=29.26 Aligned_cols=79 Identities=15% Similarity=-0.001 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhcCCceEEEEEEcCCHHH
Q 044284 33 HALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRHIQCELVVLERQDVAR 112 (421)
Q Consensus 33 ~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~gV~~e~vvleg~dva~ 112 (421)
.||..|++ .+ .|+.|+|.++... . . . .....-..+-|..+..-+.+.|+.+. ++. +++.+
T Consensus 18 ~aL~~A~~----~~-~v~~vfi~d~~~~------~-~--~---~~r~~fl~~sL~~l~~~L~~~g~~l~--~~~-g~~~~ 77 (420)
T 2j07_A 18 PALLEALA----RG-PVVGLVVLDPNNL------K-T--T---PRRRAWFLENVRALREAYRARGGALW--VLE-GLPWE 77 (420)
T ss_dssp HHHHHHHT----TS-CEEEEEEECHHHH------S-S--C---HHHHHHHHHHHHHHHHHHHHTTCCEE--EEE-SCHHH
T ss_pred HHHHHHHh----CC-CEEEEEEECCccc------c-C--C---HHHHHHHHHHHHHHHHHHHHCCCeEE--EEe-CCHHH
Confidence 35555543 34 6888888875321 0 0 0 00011233445556666667787753 444 58999
Q ss_pred HHHHHHHHcCCCEEEEcCC
Q 044284 113 ALIEYVSQYGVETMLLGAP 131 (421)
Q Consensus 113 aIve~A~~~~idlIVmGs~ 131 (421)
.|.+++++++|+.|+.-..
T Consensus 78 ~l~~l~~~~~~~~v~~~~~ 96 (420)
T 2j07_A 78 KVPEAARRLKAKAVYALTS 96 (420)
T ss_dssp HHHHHHHHTTCSEEEEECC
T ss_pred HHHHHHHHcCCCEEEEecc
Confidence 9999999999999998543
No 105
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=30.34 E-value=2.8e+02 Score=26.26 Aligned_cols=84 Identities=8% Similarity=0.003 Sum_probs=54.1
Q ss_pred CCCEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 044284 17 REKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRR 96 (421)
Q Consensus 17 ~~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~ 96 (421)
...+|+|-+.|+.++..||-++...-. .+.+|.+|-.-.+. + +.+|.+.
T Consensus 94 ~~~ri~vl~Sg~g~~l~~ll~~~~~g~-l~~~i~~Visn~~~-----------------------~-------~~~A~~~ 142 (292)
T 3lou_A 94 ARPKVLIMVSKLEHCLADLLFRWKMGE-LKMDIVGIVSNHPD-----------------------F-------APLAAQH 142 (292)
T ss_dssp SCCEEEEEECSCCHHHHHHHHHHHHTS-SCCEEEEEEESSST-----------------------T-------HHHHHHT
T ss_pred CCCEEEEEEcCCCcCHHHHHHHHHcCC-CCcEEEEEEeCcHH-----------------------H-------HHHHHHc
Confidence 356899999999988999988876432 24555554332221 0 1236678
Q ss_pred CCceEEEEEEcCCH---HHHHHHHHHHcCCCEEEEcCC
Q 044284 97 HIQCELVVLERQDV---ARALIEYVSQYGVETMLLGAP 131 (421)
Q Consensus 97 gV~~e~vvleg~dv---a~aIve~A~~~~idlIVmGs~ 131 (421)
||++..+-....+- -.++++..+++++|+||+..-
T Consensus 143 gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivla~y 180 (292)
T 3lou_A 143 GLPFRHFPITADTKAQQEAQWLDVFETSGAELVILARY 180 (292)
T ss_dssp TCCEEECCCCSSCHHHHHHHHHHHHHHHTCSEEEESSC
T ss_pred CCCEEEeCCCcCCHHHHHHHHHHHHHHhCCCEEEecCc
Confidence 99876432111111 247999999999999999754
No 106
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5
Probab=30.33 E-value=2.2e+02 Score=28.29 Aligned_cols=32 Identities=19% Similarity=0.382 Sum_probs=21.6
Q ss_pred hcCCceEEEEEEcCCHHHHHHHHHHHcCCCEEEEcCCC
Q 044284 95 RRHIQCELVVLERQDVARALIEYVSQYGVETMLLGAPT 132 (421)
Q Consensus 95 ~~gV~~e~vvleg~dva~aIve~A~~~~idlIVmGs~g 132 (421)
+.||++.. +.++ ++--+..+..||.+|+|+.+
T Consensus 235 ~~GIpvtl--I~Ds----a~~~~M~~~~Vd~ViVGAD~ 266 (383)
T 2a0u_A 235 QEDIPCTL--ICDG----AASSLMLNRKIDAVVVGADR 266 (383)
T ss_dssp HTTCCEEE--ECGG----GHHHHHHHSCCCEEEECCSE
T ss_pred HcCCCEEE--Eehh----HHHHHhhcCCCCEEEECccE
Confidence 46898863 3232 33444566789999999984
No 107
>3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate binding, tagatose-bisphosphate aldolas tagatose-1,6-bisphosphate aldolase; HET: MSE; 1.80A {Streptococcus mutans} PDB: 3mhf_A 3mhg_A 3jrk_A 3kao_A* 3myp_A 3myo_A
Probab=29.55 E-value=2.5e+02 Score=27.34 Aligned_cols=87 Identities=9% Similarity=0.233 Sum_probs=54.9
Q ss_pred HHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhcCCceEEEEEE-c----C
Q 044284 34 ALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRHIQCELVVLE-R----Q 108 (421)
Q Consensus 34 ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~gV~~e~vvle-g----~ 108 (421)
.+.|.++.++..|+..+-+||.-.+.. . .+.+.+..+.|..+...|.+.|+++-.-++- + +
T Consensus 111 l~~~sve~a~~~GADAVk~lv~~g~d~----------~----~e~~~~q~~~l~rv~~ec~~~GiPlllEil~y~~~~~~ 176 (332)
T 3iv3_A 111 LVDWSIKRLKEAGADAVKFLLYYDVDG----------D----PQVNVQKQAYIERIGSECQAEDIPFFLEILTYDETISN 176 (332)
T ss_dssp CTTCCHHHHHHTTCSEEEEEEEECTTS----------C----HHHHHHHHHHHHHHHHHHHHHTCCEEEEEEECBTTBSC
T ss_pred ccccCHHHHHHcCCCEEEEEEEcCCCc----------h----HHHHHHHHHHHHHHHHHHHHcCCceEEEEeccCCCCCC
Confidence 566888888888888777777643211 1 1223345667888888999999997543333 2 1
Q ss_pred CH--------HHHHHHHHH-----HcCCCEEEEcCCCCC
Q 044284 109 DV--------ARALIEYVS-----QYGVETMLLGAPTKN 134 (421)
Q Consensus 109 dv--------a~aIve~A~-----~~~idlIVmGs~gr~ 134 (421)
+. .+.|...++ +.++|.+=+--.|--
T Consensus 177 ~~~~~~a~~~p~~V~~a~R~~~~~elGaDv~Kve~p~~~ 215 (332)
T 3iv3_A 177 NSSVEFAKVKVHKVNDAMKVFSAERFGIDVLKVEVPVNM 215 (332)
T ss_dssp TTSHHHHTTHHHHHHHHHHHHTSGGGCCSEEEECCSSCG
T ss_pred CcchhhhccCHHHHHHHHHHHhhcCcCCcEEEEecCCCh
Confidence 11 233554444 449999988877643
No 108
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on Pro structural and functional analyses; 2.10A {Pyrococcus horikoshii}
Probab=29.33 E-value=72 Score=29.31 Aligned_cols=37 Identities=11% Similarity=-0.025 Sum_probs=28.4
Q ss_pred CCEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEec
Q 044284 18 EKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQ 56 (421)
Q Consensus 18 ~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~ 56 (421)
..+|+|++.|...|--++.++.+.+. ...|+.+|+..
T Consensus 22 ~~~vvv~lSGGiDSs~~~~l~~~~~g--~~~v~av~~~~ 58 (257)
T 2e18_A 22 NNGVVIGISGGVDSATVAYLATKALG--KEKVLGLIMPY 58 (257)
T ss_dssp TTCEEEECCSSHHHHHHHHHHHHHHC--GGGEEEEECCS
T ss_pred CCcEEEEecCCHHHHHHHHHHHHhcC--CCcEEEEEeCC
Confidence 46899999999999888888877651 14588888754
No 109
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=28.54 E-value=2.5e+02 Score=31.86 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 044284 286 VEDDVKRLKMELKQTMDMYNAACKE 310 (421)
Q Consensus 286 ~eaEm~rLrlELk~tm~my~~AckE 310 (421)
.+.||+.|+.||+++..-.....++
T Consensus 855 ~~~El~~L~~eL~el~~~L~~le~~ 879 (1184)
T 1i84_S 855 QEEEMQAKDEELQRTKERQQKAEAE 879 (1184)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666655555444433
No 110
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=28.47 E-value=74 Score=27.00 Aligned_cols=46 Identities=17% Similarity=0.232 Sum_probs=25.9
Q ss_pred HHHHHHhhhcCCceEEEEEEcC-CHHHHHHHHHHHcCCCEEEEcCCCCCC
Q 044284 87 LPFRCYCTRRHIQCELVVLERQ-DVARALIEYVSQYGVETMLLGAPTKNG 135 (421)
Q Consensus 87 ~~~r~~c~~~gV~~e~vvleg~-dva~aIve~A~~~~idlIVmGs~gr~~ 135 (421)
+.+..-+...|++++.+-+... ++ ..|++-+. ..|.||+|+...+|
T Consensus 23 ~~ia~~l~~~g~~v~~~~~~~~~~~-~~~~~~~~--~~d~ii~Gspty~g 69 (159)
T 3fni_A 23 QAIINGITKTGVGVDVVDLGAAVDL-QELRELVG--RCTGLVIGMSPAAS 69 (159)
T ss_dssp HHHHHHHHHTTCEEEEEESSSCCCH-HHHHHHHH--TEEEEEEECCBTTS
T ss_pred HHHHHHHHHCCCeEEEEECcCcCCH-HHHHHHHH--hCCEEEEEcCcCCC
Confidence 3333334456777665444443 44 33443333 36999999997654
No 111
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1
Probab=28.27 E-value=60 Score=33.02 Aligned_cols=87 Identities=8% Similarity=0.013 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhcCCceEEEEEE-cCCHH
Q 044284 33 HALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRHIQCELVVLE-RQDVA 111 (421)
Q Consensus 33 ~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~gV~~e~vvle-g~dva 111 (421)
.||..|++. ..+ .|+.|+|.+|..... +..+ .....-..+-|..+..-+.+.|+.+....++ .+++.
T Consensus 17 ~aL~~A~~~--~~~-~v~~vfi~dp~~~~~-~~~~--------~~r~~fl~~sL~~L~~~L~~~G~~L~v~~~~~~g~~~ 84 (471)
T 1dnp_A 17 LALAAACRN--SSA-RVLALYIATPRQWAT-HNMS--------PRQAELINAQLNGLQIALAEKGIPLLFREVDDFVASV 84 (471)
T ss_dssp HHHHHHSSS--TTS-EEEEEEEECHHHHHH-TTCC--------HHHHHHHHHHHHHHHHHHHHTTCCEEEEECSSHHHHH
T ss_pred HHHHHHHhC--CCC-CEEEEEEECchhhcc-CCCC--------HHHHHHHHHHHHHHHHHHHHCCCeEEEEEccCCCCHH
Confidence 345455442 134 799999987642100 0000 0001122334555556666778876432111 35789
Q ss_pred HHHHHHHHHcCCCEEEEcCC
Q 044284 112 RALIEYVSQYGVETMLLGAP 131 (421)
Q Consensus 112 ~aIve~A~~~~idlIVmGs~ 131 (421)
+.|.+++++++|+.|+.-..
T Consensus 85 ~~l~~l~~~~~~~~v~~~~~ 104 (471)
T 1dnp_A 85 EIVKQVCAENSVTHLFYNYQ 104 (471)
T ss_dssp HHHHHHHHHHTCCEEEEECC
T ss_pred HHHHHHHHHcCCCEEEEecc
Confidence 99999999999999988543
No 112
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=27.78 E-value=53 Score=29.05 Aligned_cols=35 Identities=9% Similarity=0.103 Sum_probs=26.0
Q ss_pred CCCEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEE
Q 044284 17 REKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLV 52 (421)
Q Consensus 17 ~~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~Ll 52 (421)
+.++|+|+|.|+-.+.+++++ ++.+...|.++++|
T Consensus 4 m~k~IllgvTGs~aa~k~~~l-l~~L~~~g~~V~vv 38 (175)
T 3qjg_A 4 MGENVLICLCGSVNSINISHY-IIELKSKFDEVNVI 38 (175)
T ss_dssp -CCEEEEEECSSGGGGGHHHH-HHHHTTTCSEEEEE
T ss_pred CCCEEEEEEeCHHHHHHHHHH-HHHHHHCCCEEEEE
Confidence 457999999999999998887 45555567765544
No 113
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=27.78 E-value=2.1e+02 Score=27.61 Aligned_cols=58 Identities=14% Similarity=0.235 Sum_probs=31.7
Q ss_pred hcCCceEEEEEEcCCHHHHHHHHHHHcCCCEEEEcCCCC---CCCcccccccccccccccch-hcccCCCcceEEEEeC
Q 044284 95 RRHIQCELVVLERQDVARALIEYVSQYGVETMLLGAPTK---NGLSRSSFCRLFKASDTPGT-VLKWAPDFCNVYIVSK 169 (421)
Q Consensus 95 ~~gV~~e~vvleg~dva~aIve~A~~~~idlIVmGs~gr---~~f~~~~~~r~~~~~sVa~~-V~k~Ap~~C~V~VV~k 169 (421)
+.||++.. +.+.-++ .++. .+|.+++|+.+- |++. .+. |.-.-. +.|... .||||+.-
T Consensus 170 ~~gI~vtl--i~Dsa~~-~~m~-----~vd~VivGAd~i~~nG~v~-----nki--GT~~iAl~Ak~~~--vP~~V~a~ 231 (315)
T 3ecs_A 170 HLNVPVTV--VLDAAVG-YIME-----KADLVIVGAEGVVENGGII-----NKI--GTNQMAVCAKAQN--KPFYVVAE 231 (315)
T ss_dssp TTTCCEEE--ECGGGHH-HHGG-----GCSEEEEECSEECTTSCEE-----EET--THHHHHHHHHHTT--CCEEEECC
T ss_pred HcCCCEEE--EehhHHH-HHHH-----hCCEEEECceEEecCCCee-----ehh--hhHHHHHHHHHhC--CCEEEEec
Confidence 56898853 3332222 3332 799999999852 2332 122 232222 334433 79999864
No 114
>3gxq_A Putative regulator of transfer genes ARTA; ribbon-helix-helix, plasmid, DNA binding protein/DNA complex; HET: DNA; 2.35A {Staphylococcus aureus subsp}
Probab=27.43 E-value=29 Score=23.98 Aligned_cols=28 Identities=18% Similarity=0.399 Sum_probs=22.6
Q ss_pred ceEEEEEEcCCHHHHHHHHHHHcCCCEE
Q 044284 99 QCELVVLERQDVARALIEYVSQYGVETM 126 (421)
Q Consensus 99 ~~e~vvleg~dva~aIve~A~~~~idlI 126 (421)
.+...++.+-|..+.|+.||++.+.|.+
T Consensus 11 kvslhllvdpdmkdeiikyaqekdfdnv 38 (54)
T 3gxq_A 11 KVSLHLLVDPDMKDEIIKYAQEKDFDNV 38 (54)
T ss_dssp CEEEEEEECHHHHHHHHHHHHHHSTTCH
T ss_pred eeEEEEeeCCchhHHHHHHHHHccchhH
Confidence 4455667777899999999999988864
No 115
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=27.22 E-value=1.6e+02 Score=30.67 Aligned_cols=40 Identities=10% Similarity=0.014 Sum_probs=30.7
Q ss_pred CCCCEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCC
Q 044284 16 GREKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKS 58 (421)
Q Consensus 16 ~~~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~ 58 (421)
++..+|+|++.|...|--++..+.+.+ |..++.|||-...
T Consensus 253 g~~~~vvvalSGGvDSsv~a~ll~~~~---G~~v~~v~vd~g~ 292 (556)
T 3uow_A 253 KHDHYVIAAMSGGIDSTVAAAYTHKIF---KERFFGIFIDNGL 292 (556)
T ss_dssp TTTCEEEEECCSSHHHHHHHHHHHHHH---GGGEEEEEEECSC
T ss_pred CCCceEEEEcccCCCHHHHHHHHHHHh---CCeEEEEEEecCC
Confidence 346799999999988887777766544 5679999997543
No 116
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D
Probab=26.78 E-value=1.5e+02 Score=30.07 Aligned_cols=25 Identities=16% Similarity=0.364 Sum_probs=16.8
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHH
Q 044284 284 EDVEDDVKRLKMELKQTMDMYNAAC 308 (421)
Q Consensus 284 ~~~eaEm~rLrlELk~tm~my~~Ac 308 (421)
.+.+.+++.|+..++.++..|...+
T Consensus 326 ~~A~~~~~~L~~~~~~~~~~~~~l~ 350 (457)
T 3obv_E 326 KDAQEQYNKLRMMHSNMETLYKELG 350 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777777777777776554
No 117
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=26.68 E-value=3.5e+02 Score=27.76 Aligned_cols=38 Identities=21% Similarity=0.149 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHh
Q 044284 292 RLKMELKQTMDMYNAACKEALAAKQKAVELEKWKMKEE 329 (421)
Q Consensus 292 rLrlELk~tm~my~~AckEa~~Akqk~~eL~~~~~EE~ 329 (421)
++.-|.||.-+--+.+.+|...+++++.++.+.-.|+.
T Consensus 381 a~t~e~k~A~d~l~a~~kek~~~~n~~a~~~~KiAE~K 418 (602)
T 1cii_A 381 ARTNEQKHANDALNALLKEKENIRNQLSGINQKIAEEK 418 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 34445555555555555555555555555544433333
No 118
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=26.34 E-value=2.7e+02 Score=31.68 Aligned_cols=42 Identities=10% Similarity=0.098 Sum_probs=25.2
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 044284 283 MEDVEDDVKRLKMELKQTMDMYNAACKEALAAKQKAVELEKW 324 (421)
Q Consensus 283 ~~~~eaEm~rLrlELk~tm~my~~AckEa~~Akqk~~eL~~~ 324 (421)
...++.|++.|+.+|....+.....-.+.-..+++..++...
T Consensus 859 l~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~ 900 (1184)
T 1i84_S 859 MQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEK 900 (1184)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777766666555555444445555555443
No 119
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=26.33 E-value=81 Score=26.67 Aligned_cols=42 Identities=29% Similarity=0.362 Sum_probs=24.3
Q ss_pred HHhhhcCCceEEEEEEcCCHHHHHHHHHHHcCCCEEEEcCCCCCC
Q 044284 91 CYCTRRHIQCELVVLERQDVARALIEYVSQYGVETMLLGAPTKNG 135 (421)
Q Consensus 91 ~~c~~~gV~~e~vvleg~dva~aIve~A~~~~idlIVmGs~gr~~ 135 (421)
+.+...|+.++.+-+...++. .|+..+. ..|.||+|+...++
T Consensus 23 ~~l~~~g~~v~~~~~~~~~~~-~~~~~~~--~~d~ii~Gspty~g 64 (161)
T 3hly_A 23 RGLVKTGVAVEMVDLRAVDPQ-ELIEAVS--SARGIVLGTPPSQP 64 (161)
T ss_dssp HHHHHTTCCEEEEETTTCCHH-HHHHHHH--HCSEEEEECCBSSC
T ss_pred HHHHhCCCeEEEEECCCCCHH-HHHHHHH--hCCEEEEEcCCcCC
Confidence 333456777665444443433 3433333 36999999997654
No 120
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=26.13 E-value=2.4e+02 Score=26.93 Aligned_cols=84 Identities=13% Similarity=0.086 Sum_probs=52.4
Q ss_pred CCCEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 044284 17 REKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRR 96 (421)
Q Consensus 17 ~~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~ 96 (421)
...+|+|-+.|+.++..||-++...-. .+.+|.+|-.-.+. ++.+|.+.
T Consensus 104 ~~~ri~vl~Sg~g~nl~~ll~~~~~g~-l~~~I~~Visn~~~------------------------------~~~~A~~~ 152 (302)
T 3o1l_A 104 QKKRVVLMASRESHCLADLLHRWHSDE-LDCDIACVISNHQD------------------------------LRSMVEWH 152 (302)
T ss_dssp SCCEEEEEECSCCHHHHHHHHHHHTTC-SCSEEEEEEESSST------------------------------THHHHHTT
T ss_pred CCcEEEEEEeCCchhHHHHHHHHHCCC-CCcEEEEEEECcHH------------------------------HHHHHHHc
Confidence 356899999999888888877765321 24455554332211 01235677
Q ss_pred CCceEEEEEEcCC-H--HHHHHHHHHHcCCCEEEEcCC
Q 044284 97 HIQCELVVLERQD-V--ARALIEYVSQYGVETMLLGAP 131 (421)
Q Consensus 97 gV~~e~vvleg~d-v--a~aIve~A~~~~idlIVmGs~ 131 (421)
||++..+-....+ . -.++++..++.++|+||+..-
T Consensus 153 gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~DliVlagy 190 (302)
T 3o1l_A 153 DIPYYHVPVDPKDKEPAFAEVSRLVGHHQADVVVLARY 190 (302)
T ss_dssp TCCEEECCCCSSCCHHHHHHHHHHHHHTTCSEEEESSC
T ss_pred CCCEEEcCCCcCCHHHHHHHHHHHHHHhCCCEEEHhHh
Confidence 9887643111111 1 257899999999999999754
No 121
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=25.92 E-value=41 Score=22.15 Aligned_cols=16 Identities=31% Similarity=0.414 Sum_probs=12.8
Q ss_pred hcHHHHHHHHHHHHHH
Q 044284 284 EDVEDDVKRLKMELKQ 299 (421)
Q Consensus 284 ~~~eaEm~rLrlELk~ 299 (421)
-++|.|+.|||-.|..
T Consensus 18 ~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 18 WHLENEVARLEKENAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc
Confidence 5788899999987764
No 122
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=24.97 E-value=69 Score=31.86 Aligned_cols=48 Identities=10% Similarity=0.135 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHhhhcCCceEEEEEEcCCHHHHHHHHHHHcCCCEEEEcCCCCCCCc
Q 044284 80 IHAMEVFLPFRCYCTRRHIQCELVVLERQDVARALIEYVSQYGVETMLLGAPTKNGLS 137 (421)
Q Consensus 80 ~~a~elL~~~r~~c~~~gV~~e~vvleg~dva~aIve~A~~~~idlIVmGs~gr~~f~ 137 (421)
.-+..+|.-|..+|..+|.+++.+-...++. .|+.-+++--.|.+++.
T Consensus 143 ~fa~~L~rMY~r~Ae~~g~k~evl~~~~~e~----------~G~Ks~~~~I~G~~ayg 190 (365)
T 1gqe_A 143 DWASMLERMYLRWAESRGFKTEIIEESEGEV----------AGIKSVTIKISGDYAYG 190 (365)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEEEEECSS----------SSEEEEEEEEESTTHHH
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEEecCCCCC----------CceeEEEEEEECcCHHH
Confidence 4578899999999999999998776554443 24555555555655553
No 123
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=24.61 E-value=1.9e+02 Score=24.01 Aligned_cols=38 Identities=24% Similarity=0.304 Sum_probs=22.7
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 044284 283 MEDVEDDVKRLKMELKQTMDMYNAACKEALAAKQKAVELEK 323 (421)
Q Consensus 283 ~~~~eaEm~rLrlELk~tm~my~~AckEa~~Akqk~~eL~~ 323 (421)
++.+.-|+.+||-||...+-= |+..-..-+.++++|..
T Consensus 17 Ie~Lkreie~lk~ele~l~~E---~q~~v~ql~~~i~~Le~ 54 (120)
T 3i00_A 17 IERLYREISGLKAQLENMKTE---SQRVVLQLKGHVSELEA 54 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 466778888888888887433 33333334445555543
No 124
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag, phosphorylation, gene regulation, signaling protein; HET: TPO FAD; 2.30A {Drosophila melanogaster} PDB: 4gu5_A*
Probab=24.58 E-value=1.6e+02 Score=30.56 Aligned_cols=85 Identities=9% Similarity=0.004 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhc---CCceEEEEEEcCC
Q 044284 33 HALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRR---HIQCELVVLERQD 109 (421)
Q Consensus 33 ~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~---gV~~e~vvleg~d 109 (421)
.||..|++... .|..|+.|+|.++..... . ... . .- ..-..+-|..+..-+.+. |+.. +++. ++
T Consensus 20 ~AL~~A~~~~~-~g~~vl~vfi~dp~~~~~-~--~~~-~-~r----~~Fl~~sL~~L~~~L~~~~~~G~~L--~v~~-G~ 86 (538)
T 3tvs_A 20 PALLAALADKD-QGIALIPVFIFDGESAGT-K--NVG-Y-NR----MRFLLDSLQDIDDQLQAATDGRGRL--LVFE-GE 86 (538)
T ss_dssp HHHHTTTGGGT-TTCBCCEEEEECSSSSCS-T--TCC-H-HH----HHHHHHHHHHHHHHGGGSCSSSSCC--EEEE-SC
T ss_pred HHHHHHHHhCC-CCCCEEEEEecChhhhcc-C--CCC-H-HH----HHHHHHHHHHHHHHHHHhhcCCCeE--EEEe-CC
Confidence 45555554432 344799999998753210 0 000 0 00 012333455566666667 7775 3445 57
Q ss_pred HHHHHHHHHHHcCCCEEEEcC
Q 044284 110 VARALIEYVSQYGVETMLLGA 130 (421)
Q Consensus 110 va~aIve~A~~~~idlIVmGs 130 (421)
+.+.|.+++++.+|+.|+.-.
T Consensus 87 ~~~vl~~L~~~~~a~~V~~n~ 107 (538)
T 3tvs_A 87 PAYIFRRLHEQVRLHRICIEQ 107 (538)
T ss_dssp HHHHHHHHHHHHCEEEECEEC
T ss_pred HHHHHHHHHHHcCCCEEEEcc
Confidence 999999999999999998643
No 125
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=23.73 E-value=5.3e+02 Score=25.35 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=13.0
Q ss_pred HHHHHHHHH-HHHHHHHhhhHHHHHH
Q 044284 357 QKIAKLEVQ-KRVNAEAKALKEAEEK 381 (421)
Q Consensus 357 k~~ae~Eaq-kR~~aE~kA~~e~~ek 381 (421)
+|+-|+|++ +..+++++-.+...++
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (471)
T 3mq9_A 443 KKVEELEGEITTLNHKLQDASAEVER 468 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477777765 3344555444433333
No 126
>3bvp_A INT, TP901-1 integrase; DNA recombinase, recombination; 2.10A {Lactococcus phage tp901-1}
Probab=23.44 E-value=1.3e+02 Score=24.71 Aligned_cols=45 Identities=13% Similarity=0.065 Sum_probs=32.4
Q ss_pred HHHHHHhhhcCCceEEEEEEcC--------CHHHHHHHHHHHcCCCEEEEcCC
Q 044284 87 LPFRCYCTRRHIQCELVVLERQ--------DVARALIEYVSQYGVETMLLGAP 131 (421)
Q Consensus 87 ~~~r~~c~~~gV~~e~vvleg~--------dva~aIve~A~~~~idlIVmGs~ 131 (421)
..++.+|.++|+.+..+..+.+ +--..+++.+....+|.||+-.-
T Consensus 28 ~~l~~~a~~~g~~~~~~~~D~g~Sg~~~~Rp~l~~ll~~~~~g~~d~lvv~~l 80 (138)
T 3bvp_A 28 DRLTKYAEAMGWQVSDTYTDAGFSGAKLERPAMQRLINDIENKAFDTVLVYKL 80 (138)
T ss_dssp HHHHHHHHHTTCEEEEEEEEETCCSSSSCCHHHHHHHHGGGGTSCSEEEESSH
T ss_pred HHHHHHHHHCCCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHhCCCCEEEEEeC
Confidence 3456778888988776665532 23467888888888999998764
No 127
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=22.95 E-value=4.4e+02 Score=27.35 Aligned_cols=67 Identities=19% Similarity=0.311 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHhhhhhhhh-hchhhhHHHHHHHHHHHHHHHH
Q 044284 288 DDVKRLKMELKQTMDMYNAACKEALAAKQKAVELEKWKMKEEKRLKETQ-MGEERGKAKIKAAIEAAEAAQK 358 (421)
Q Consensus 288 aEm~rLrlELk~tm~my~~AckEa~~Akqk~~eL~~~~~EE~~k~eea~-~~eE~EKak~~aA~eaaE~ak~ 358 (421)
.|++|+..|..+ +..-....+|.+.+++.+..+-- .=++.+++.. .-.+.||++..+++++++.+-.
T Consensus 510 ~ei~~~~~~~~~-~~~~d~~~~~~~~~~n~~e~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 577 (605)
T 4b9q_A 510 DEIQKMVRDAEA-NAEADRKCEELVQTRNQGDHLLH---STRKQVEEAGDKLPADDKTAIESALTALETALK 577 (605)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhh-hHhhHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHh
Confidence 467788777765 44555667777888777655421 1122333211 1112678888888887766543
No 128
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Probab=22.86 E-value=1.2e+02 Score=30.75 Aligned_cols=83 Identities=7% Similarity=0.021 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhcCCceEEEEEEcCCHHH
Q 044284 33 HALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRHIQCELVVLERQDVAR 112 (421)
Q Consensus 33 ~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~gV~~e~vvleg~dva~ 112 (421)
.||..|++. +..|+.|+|.++..... .... .....-..+-|..+..-+.+.|+.+. ++. +++.+
T Consensus 19 ~aL~~A~~~----~~~v~~vfi~dp~~~~~---~~~~------~~r~~fl~~sL~~L~~~L~~~G~~L~--v~~-g~~~~ 82 (484)
T 1owl_A 19 IGLAAARAQ----SAQLIGLFCLDPQILQS---ADMA------PARVAYLQGCLQELQQRYQQAGSRLL--LLQ-GDPQH 82 (484)
T ss_dssp HHHHHHHHH----CSCEEEEEEECHHHHTC---TTCC------HHHHHHHHHHHHHHHHHHHHHTSCEE--EEE-SCHHH
T ss_pred HHHHHHHhc----CCCEEEEEEEcchhhcC---CCCC------HHHHHHHHHHHHHHHHHHHHCCCeEE--EEe-CCHHH
Confidence 466666653 23588888887532100 0000 00001223335555555666787753 444 58999
Q ss_pred HHHHHHHHcCCCEEEEcCC
Q 044284 113 ALIEYVSQYGVETMLLGAP 131 (421)
Q Consensus 113 aIve~A~~~~idlIVmGs~ 131 (421)
.|.+++++++|+.|+.-..
T Consensus 83 ~l~~l~~~~~~~~v~~~~~ 101 (484)
T 1owl_A 83 LIPQLAQQLQAEAVYWNQD 101 (484)
T ss_dssp HHHHHHHHTTCSEEEEECC
T ss_pred HHHHHHHHcCCCEEEEecc
Confidence 9999999999999988443
No 129
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1
Probab=22.68 E-value=2.9e+02 Score=26.53 Aligned_cols=25 Identities=16% Similarity=0.364 Sum_probs=18.5
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHH
Q 044284 284 EDVEDDVKRLKMELKQTMDMYNAAC 308 (421)
Q Consensus 284 ~~~eaEm~rLrlELk~tm~my~~Ac 308 (421)
.+.+.++..|+..+++++..|...|
T Consensus 255 ~~a~~~~~~l~~~~~~~~~~~~~l~ 279 (340)
T 1v9d_A 255 KDAQEQYNKLRMMHSNMETLYKELG 279 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566778888888888888876654
No 130
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=22.31 E-value=3.8e+02 Score=23.14 Aligned_cols=12 Identities=8% Similarity=0.260 Sum_probs=6.7
Q ss_pred hhhHHHHHHHHH
Q 044284 395 LKYQSLFHILVV 406 (421)
Q Consensus 395 ~~~~~~~~~~~~ 406 (421)
..|..++.-|+.
T Consensus 97 ~~Y~~~L~~Li~ 108 (187)
T 3v6i_A 97 PEWPEVVRKLAL 108 (187)
T ss_dssp TTHHHHHHHHHH
T ss_pred ccHHHHHHHHHH
Confidence 357666555544
No 131
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=22.28 E-value=56 Score=29.00 Aligned_cols=36 Identities=0% Similarity=-0.028 Sum_probs=27.0
Q ss_pred CCCEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEE
Q 044284 17 REKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVH 53 (421)
Q Consensus 17 ~~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlH 53 (421)
|.++|+|+|.|+-.+.+++++.-.+ ...|.++++|-
T Consensus 1 ~~k~IllgvTGs~aa~k~~~l~~~L-~~~g~~V~vv~ 36 (181)
T 1g63_A 1 MYGKLLICATASINVININHYIVEL-KQHFDEVNILF 36 (181)
T ss_dssp CCCCEEEEECSCGGGGGHHHHHHHH-TTTSSCEEEEE
T ss_pred CCCEEEEEEECHHHHHHHHHHHHHH-HHCCCEEEEEE
Confidence 4678999999999989998875554 45577665543
No 132
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii}
Probab=22.13 E-value=2.3e+02 Score=28.50 Aligned_cols=81 Identities=9% Similarity=0.103 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhcCCCEEEEEEEecCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhhcCCceEEEEEEcCCHHH
Q 044284 33 HALKWAADNILSRHQTIKLVHVIQKSHSNNQYSVGISEELIEQQQHDIHAMEVFLPFRCYCTRRHIQCELVVLERQDVAR 112 (421)
Q Consensus 33 ~ALkwAid~a~~~ga~I~LlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~a~elL~~~r~~c~~~gV~~e~vvleg~dva~ 112 (421)
.||..|++ .+..|+.|+|.++......+..+ . . ...-..+-|..+..-+.+.|+.+. ++. +++.+
T Consensus 17 ~aL~~A~~----~~~~v~~vfi~dp~~~~~~~~~~----~-~---r~~Fl~~sL~~L~~~L~~~G~~L~--v~~-g~~~~ 81 (440)
T 2e0i_A 17 TGLNYALS----ECDRVIPVFIADPRQLINNPYKS----E-F---AVSFMINSLLELDDELRKKGSRLN--VFF-GEAEK 81 (440)
T ss_dssp HHHHHHHH----HSSEEEEEEEECHHHHSSCTTCC----H-H---HHHHHHHHHHHHHHHHHTTTCCCE--EEE-SCHHH
T ss_pred HHHHHHHh----cCCCEEEEEEeChhhhccCCcCC----H-H---HHHHHHHHHHHHHHHHHHcCCeEE--EEE-CCHHH
Confidence 45666665 36679999998764210000000 0 0 001233345556666667787763 444 58999
Q ss_pred HHHHHHHHcCCCEEEEcC
Q 044284 113 ALIEYVSQYGVETMLLGA 130 (421)
Q Consensus 113 aIve~A~~~~idlIVmGs 130 (421)
.|.++++ +|+.|+.-.
T Consensus 82 ~l~~l~~--~~~~v~~~~ 97 (440)
T 2e0i_A 82 VVSRFFN--KVDAIYVNE 97 (440)
T ss_dssp HHHHHCT--TCSEEEEEC
T ss_pred HHHHHHc--CCCEEEEec
Confidence 9999998 999988743
No 133
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=21.71 E-value=84 Score=28.56 Aligned_cols=34 Identities=9% Similarity=0.138 Sum_probs=26.0
Q ss_pred CEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEE
Q 044284 19 KIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVH 53 (421)
Q Consensus 19 ~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlH 53 (421)
++|+|+|.|+-.+.++++..-.+. ..|.++++|-
T Consensus 5 k~IllgvTGaiaa~k~~~ll~~L~-~~g~eV~vv~ 38 (209)
T 3zqu_A 5 ERITLAMTGASGAQYGLRLLDCLV-QEEREVHFLI 38 (209)
T ss_dssp SEEEEEECSSSCHHHHHHHHHHHH-HTTCEEEEEE
T ss_pred CEEEEEEECHHHHHHHHHHHHHHH-HCCCEEEEEE
Confidence 789999999999999988755544 4577765543
No 134
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=21.50 E-value=4.4e+02 Score=23.63 Aligned_cols=66 Identities=17% Similarity=0.220 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHhhhhhhhhh-chhhhHHHHHHHHHHHHHHH
Q 044284 288 DDVKRLKMELKQTMDMYNAACKEALAAKQKAVELEKWKMKEEKRLKETQM-GEERGKAKIKAAIEAAEAAQ 357 (421)
Q Consensus 288 aEm~rLrlELk~tm~my~~AckEa~~Akqk~~eL~~~~~EE~~k~eea~~-~eE~EKak~~aA~eaaE~ak 357 (421)
.|++|+..|..+ +..-...-+|.+.|++.+..+- -.=++.+++... -.+.+|++..+++++++.+-
T Consensus 122 eeI~~m~~~a~~-~~~eD~~~r~~~e~kn~le~~i---~~~~~~l~~~~~~l~~~~k~~i~~~l~~~~~~L 188 (219)
T 4e81_A 122 DEIQKMVRDAEA-NAEADRKFEELVQTRNQGDHLL---HSTRKQVEEAGDKLPADDKTAIESALTALETAL 188 (219)
T ss_dssp HHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-hhhccHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhhCCHHHHHHHHHHHHHHHHHH
Confidence 467787777655 3444456667777776655442 111223333110 11267777777777766553
No 135
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1
Probab=21.22 E-value=5.4e+02 Score=24.52 Aligned_cols=19 Identities=11% Similarity=0.420 Sum_probs=13.1
Q ss_pred ChhcHHHHHHHHHHHHHHH
Q 044284 282 NMEDVEDDVKRLKMELKQT 300 (421)
Q Consensus 282 ~~~~~eaEm~rLrlELk~t 300 (421)
+.+++..+|..|+.+++..
T Consensus 211 s~~~l~~~l~~l~~~~~~~ 229 (340)
T 1v9d_A 211 SAENLQKSLDQMKKQIADV 229 (340)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 4577777887777766543
No 136
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A*
Probab=21.10 E-value=1.9e+02 Score=28.10 Aligned_cols=62 Identities=11% Similarity=0.052 Sum_probs=33.4
Q ss_pred hcCCceEEEEEEcCCHHHHHHHHHHHcCCCEEEEcCCCC---CCCcccccccccccccccchh-cccCCCcceEEEEeC-
Q 044284 95 RRHIQCELVVLERQDVARALIEYVSQYGVETMLLGAPTK---NGLSRSSFCRLFKASDTPGTV-LKWAPDFCNVYIVSK- 169 (421)
Q Consensus 95 ~~gV~~e~vvleg~dva~aIve~A~~~~idlIVmGs~gr---~~f~~~~~~r~~~~~sVa~~V-~k~Ap~~C~V~VV~k- 169 (421)
+.||++.. +.++-++ .++ ..+|.+|+|+.+- |++. .+. |.-.-.+ .|... .||||+.-
T Consensus 190 ~~GI~vtl--I~Dsa~~-~~M-----~~Vd~VivGAd~V~anG~v~-----NKi--GT~~lAl~Ak~~~--vPfyV~a~~ 252 (338)
T 3a11_A 190 SYGIPVIY--VVDSAAR-HYM-----KMTDKVVMGADSITVNGAVI-----NKI--GTALIALTAKEHR--VWTMIAAET 252 (338)
T ss_dssp HTTCCEEE--ECGGGTT-TTG-----GGCSEEEECCSEECTTSCEE-----EET--THHHHHHHHHHTT--CEEEEECCG
T ss_pred hCCCCEEE--EehHHHH-HHH-----HhCCEEEECccEEecCCCEe-----ecc--cHHHHHHHHHHcC--CCEEEeccc
Confidence 46898863 3333233 233 6699999999852 1221 111 2322333 33333 89999964
Q ss_pred Cccc
Q 044284 170 GKCH 173 (421)
Q Consensus 170 gk~~ 173 (421)
-|+.
T Consensus 253 ~k~d 256 (338)
T 3a11_A 253 YKFH 256 (338)
T ss_dssp GGBC
T ss_pred ceec
Confidence 4554
No 137
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y
Probab=21.03 E-value=91 Score=30.96 Aligned_cols=48 Identities=17% Similarity=0.167 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHhhhcCCceEEEEEEcCCHHHHHHHHHHHcCCCEEEEcCCCCCCCc
Q 044284 80 IHAMEVFLPFRCYCTRRHIQCELVVLERQDVARALIEYVSQYGVETMLLGAPTKNGLS 137 (421)
Q Consensus 80 ~~a~elL~~~r~~c~~~gV~~e~vvleg~dva~aIve~A~~~~idlIVmGs~gr~~f~ 137 (421)
.-+..+|.-|..+|..+|.+++.+-...++. .|+.-+++--.|.+++.
T Consensus 131 ~fa~~L~rMY~r~Ae~~g~k~evl~~~~~~~----------gG~ks~~~~I~G~~ayg 178 (365)
T 2ihr_1 131 DWAEMLLRMYTRFAERQGFQVEVVDLTPGPE----------AGIDYAQILVKGENAYG 178 (365)
T ss_dssp HHHHHHHHHHHHHHHTTTCEEEEEEEEECSS----------SSEEEEEEEEESTTHHH
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEEecCCCCC----------CCeEEEEEEEEccCHHH
Confidence 3477899999999999999998765554443 25555555555655553
No 138
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=20.99 E-value=8.6e+02 Score=26.76 Aligned_cols=99 Identities=18% Similarity=0.139 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHhhhhhhhhhchh--------hhHHHHHHHHHHHHHHHH
Q 044284 287 EDDVKRLKMELKQTMDMYNAACKEALAAKQKAVELEKWKMKEEKRLKETQMGEE--------RGKAKIKAAIEAAEAAQK 358 (421)
Q Consensus 287 eaEm~rLrlELk~tm~my~~AckEa~~Akqk~~eL~~~~~EE~~k~eea~~~eE--------~EKak~~aA~eaaE~ak~ 358 (421)
++|-++.|.||-+.+-.-...-...-.--.---.-...++|.+..++.|+++-+ .=+...++...+.+..|.
T Consensus 696 ~a~aE~~r~~Llel~a~s~aves~g~a~AeA~a~aea~~Ie~ea~v~~a~l~a~a~~i~~~ael~~~~~~~~~el~~~~~ 775 (861)
T 2zuo_A 696 QSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARA 775 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHhhhcchhHHHHHHHHHHHHHhhHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 044284 359 IAKLEVQKRVNAEAKALKEAEEKRKLLDAL 388 (421)
Q Consensus 359 ~ae~EaqkR~~aE~kA~~e~~ek~k~~~al 388 (421)
++++|-+|-+.. |.-|+..-++.+++|
T Consensus 776 ~~ele~~k~~~l---a~ie~~kf~~~v~ai 802 (861)
T 2zuo_A 776 QLELEVSKAQQL---ANVEAKKFKEMTEAL 802 (861)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHS
T ss_pred HHHhhHHHHHHH---HHHHHHHHHHHHHhh
No 139
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=20.69 E-value=1.3e+02 Score=27.80 Aligned_cols=41 Identities=12% Similarity=-0.060 Sum_probs=28.2
Q ss_pred hhhcCCceEEEEEEcCCHHHHHHHHHHHcCCCEEEEcCCCCCC
Q 044284 93 CTRRHIQCELVVLERQDVARALIEYVSQYGVETMLLGAPTKNG 135 (421)
Q Consensus 93 c~~~gV~~e~vvleg~dva~aIve~A~~~~idlIVmGs~gr~~ 135 (421)
+...|.++. .+-.+-|.+.|++.+.++++|.|.+.+.....
T Consensus 147 L~~~G~~Vi--~LG~~vp~e~l~~~~~~~~~d~V~lS~l~~~~ 187 (258)
T 2i2x_B 147 LRANGYNVV--DLGRDVPAEEVLAAVQKEKPIMLTGTALMTTT 187 (258)
T ss_dssp HHHTTCEEE--EEEEECCSHHHHHHHHHHCCSEEEEECCCTTT
T ss_pred HHHCCCEEE--ECCCCCCHHHHHHHHHHcCCCEEEEEeeccCC
Confidence 345666553 34334578899999999999999987764333
No 140
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=20.56 E-value=57 Score=34.24 Aligned_cols=39 Identities=21% Similarity=0.261 Sum_probs=21.2
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044284 284 EDVEDDVKRLKMELKQTMDMYNAACKEALAAKQKAVELE 322 (421)
Q Consensus 284 ~~~eaEm~rLrlELk~tm~my~~AckEa~~Akqk~~eL~ 322 (421)
.++|-|-..|...|+|..+=...|..+...+..++.+|.
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~ 369 (575)
T 2i1j_A 331 ERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLE 369 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 444444445555566666666677777777777777663
No 141
>3sig_A PArg, poly(ADP-ribose) glycohydrolase; HET: AR6; 1.28A {Thermomonospora curvata} PDB: 3sih_A 3sii_A* 3sij_A
Probab=20.48 E-value=75 Score=30.33 Aligned_cols=26 Identities=15% Similarity=0.172 Sum_probs=23.4
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCc
Q 044284 112 RALIEYVSQYGVETMLLGAPTKNGLS 137 (421)
Q Consensus 112 ~aIve~A~~~~idlIVmGs~gr~~f~ 137 (421)
..+++.|..++++.||+|+-|-|.|.
T Consensus 201 r~vL~iA~~~g~~~LVLGA~GCGvfg 226 (277)
T 3sig_A 201 AKVLAAARHHGHRRLVLGAWGCGVFG 226 (277)
T ss_dssp HHHHHHHHHTTCCEEEECCTTSSTTC
T ss_pred HHHHHHHHHcCCCEEEECCcccCcCC
Confidence 46788999999999999999999885
No 142
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=20.33 E-value=94 Score=31.52 Aligned_cols=46 Identities=24% Similarity=0.309 Sum_probs=25.6
Q ss_pred HHhhhcCCceEEEEEEcCCHHHHHHHHHH---HcCC-CEEEEcCCCCCCC
Q 044284 91 CYCTRRHIQCELVVLERQDVARALIEYVS---QYGV-ETMLLGAPTKNGL 136 (421)
Q Consensus 91 ~~c~~~gV~~e~vvleg~dva~aIve~A~---~~~i-dlIVmGs~gr~~f 136 (421)
..|...||+++..|.--+-..+.+.+|++ ..++ +.||.|+-+-++|
T Consensus 286 ~~l~~~gi~~~v~V~saHR~p~~~~~~~~~~~~~g~~~viIa~AG~~a~L 335 (425)
T 2h31_A 286 KACGNFGIPCELRVTSAHKGPDETLRIKAEYEGDGIPTVFVAVAGRSNGL 335 (425)
T ss_dssp HHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHTTCCCEEEEEECCSSCCH
T ss_pred HHHHHcCCceEEeeeeccCCHHHHHHHHHHHHHCCCCeEEEEEcCcccch
Confidence 33445577777666654444555555554 4556 4666666543333
No 143
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=20.23 E-value=3.4e+02 Score=25.35 Aligned_cols=74 Identities=8% Similarity=0.040 Sum_probs=42.0
Q ss_pred HHHHHHHhhhcCCceEEEEEEcCCHHHHHHHHHHHcCCCEEEEcCCCCCCCcccccccccccccccchhcccCCCcceEE
Q 044284 86 FLPFRCYCTRRHIQCELVVLERQDVARALIEYVSQYGVETMLLGAPTKNGLSRSSFCRLFKASDTPGTVLKWAPDFCNVY 165 (421)
Q Consensus 86 L~~~r~~c~~~gV~~e~vvleg~dva~aIve~A~~~~idlIVmGs~gr~~f~~~~~~r~~~~~sVa~~V~k~Ap~~C~V~ 165 (421)
+..+...|.+.|+.+ +++-+++.+ ++.|.+.++|.|.++.+..+.|. - .-+....+.+..|..++
T Consensus 151 l~~l~~~a~~lGl~~---lvev~t~ee--~~~A~~~Gad~IGv~~r~l~~~~-----~---dl~~~~~l~~~v~~~~p-- 215 (272)
T 3qja_A 151 LVSMLDRTESLGMTA---LVEVHTEQE--ADRALKAGAKVIGVNARDLMTLD-----V---DRDCFARIAPGLPSSVI-- 215 (272)
T ss_dssp HHHHHHHHHHTTCEE---EEEESSHHH--HHHHHHHTCSEEEEESBCTTTCC-----B---CTTHHHHHGGGSCTTSE--
T ss_pred HHHHHHHHHHCCCcE---EEEcCCHHH--HHHHHHCCCCEEEECCCcccccc-----c---CHHHHHHHHHhCcccCE--
Confidence 444555666667654 344456644 45566789999999865444442 1 11334556666654344
Q ss_pred EEeCCccce
Q 044284 166 IVSKGKCHA 174 (421)
Q Consensus 166 VV~kgk~~~ 174 (421)
||.-|.|.+
T Consensus 216 vVaegGI~t 224 (272)
T 3qja_A 216 RIAESGVRG 224 (272)
T ss_dssp EEEESCCCS
T ss_pred EEEECCCCC
Confidence 555666653
No 144
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A
Probab=20.13 E-value=1.6e+02 Score=27.16 Aligned_cols=37 Identities=8% Similarity=-0.094 Sum_probs=28.9
Q ss_pred CCEEEEccCCCHHHHHHHHHHHHHHhcCCCEEEEEEEecC
Q 044284 18 EKIVAVAIDKDKFSQHALKWAADNILSRHQTIKLVHVIQK 57 (421)
Q Consensus 18 ~~~IlVAVDgS~~S~~ALkwAid~a~~~ga~I~LlHV~~~ 57 (421)
..+|+|++.|...|--++.++.+.. +..|+.+|+...
T Consensus 25 ~~~vvv~lSGGiDSsv~~~l~~~~~---~~~v~av~~~~~ 61 (268)
T 1xng_A 25 FKKVVYGLSGGLDSAVVGVLCQKVF---KENAHALLMPSS 61 (268)
T ss_dssp CCCEEEECCSSHHHHHHHHHHHHHH---GGGEEEEECCCS
T ss_pred CCCEEEEccCcHHHHHHHHHHHHhC---CCCEEEEEeCCC
Confidence 4689999999999988888887765 345778887643
Done!