BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044287
(188 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O82248|NFYB5_ARATH Nuclear transcription factor Y subunit B-5 OS=Arabidopsis thaliana
GN=NFYB5 PE=2 SV=1
Length = 160
Score = 182 bits (462), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 80/109 (73%), Positives = 93/109 (85%)
Query: 30 IKEQERLLPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERRK 89
+KEQ+RLLPIANVGRIMK ILPANAK+SKEAKETMQECVSEFISF+T EAS+KC KE+RK
Sbjct: 49 VKEQDRLLPIANVGRIMKNILPANAKVSKEAKETMQECVSEFISFVTGEASDKCHKEKRK 108
Query: 90 TVNGDDICWALGTLGFDDYAGPIRRYLHKYRELEGERANQQDKASNSNS 138
TVNGDDICWA+ LGFDDYA +++YLH+YR LEGE+ N K +S
Sbjct: 109 TVNGDDICWAMANLGFDDYAAQLKKYLHRYRVLEGEKPNHHGKGGPKSS 157
>sp|Q9SIT9|NFYB7_ARATH Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana
GN=NFYB7 PE=2 SV=1
Length = 215
Score = 164 bits (415), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 71/114 (62%), Positives = 94/114 (82%)
Query: 15 NTGAAGAGASSDDGGIKEQERLLPIANVGRIMKQILPANAKISKEAKETMQECVSEFISF 74
N G+ + ++++ KEQ+R LPIANVGRIMK++LP N KISK+AKET+QECVSEFISF
Sbjct: 19 NPGSPSSKTNNNNNNNKEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFISF 78
Query: 75 ITSEASEKCRKERRKTVNGDDICWALGTLGFDDYAGPIRRYLHKYRELEGERAN 128
+T EAS+KC++E+RKT+NGDDI WA+ TLGF+DY P++ YL KYR+ EGE+ N
Sbjct: 79 VTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEKVN 132
>sp|O23310|NFYB3_ARATH Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana
GN=NFYB3 PE=2 SV=1
Length = 161
Score = 161 bits (408), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 72/117 (61%), Positives = 92/117 (78%)
Query: 12 MVDNTGAAGAGASSDDGGIKEQERLLPIANVGRIMKQILPANAKISKEAKETMQECVSEF 71
M D+ +G + +EQ+R LPIANV RIMK+ LPANAKISK+AKET+QECVSEF
Sbjct: 1 MADSDNDSGGHKDGGNASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEF 60
Query: 72 ISFITSEASEKCRKERRKTVNGDDICWALGTLGFDDYAGPIRRYLHKYRELEGERAN 128
ISFIT EAS+KC++E+RKT+NGDD+ WA+ TLGF+DY P++ YL KYRE+EGE+
Sbjct: 61 ISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTT 117
>sp|O04027|NFYB4_ARATH Nuclear transcription factor Y subunit B-4 OS=Arabidopsis thaliana
GN=NFYB4 PE=1 SV=1
Length = 139
Score = 161 bits (408), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 74/110 (67%), Positives = 91/110 (82%), Gaps = 1/110 (0%)
Query: 30 IKEQERLLPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERRK 89
+ +++RLLPIANVGR+MKQILP+NAKISKEAK+T+QEC +EFISF+T EASEKC +E RK
Sbjct: 1 MTDEDRLLPIANVGRLMKQILPSNAKISKEAKQTVQECATEFISFVTCEASEKCHRENRK 60
Query: 90 TVNGDDICWALGTLGFDDYAGPIRRYLHKYRELEGERANQQDKASNSNSN 139
TVNGDDI WAL TLG D+YA + R+LHKYRE E ER + +K SN + N
Sbjct: 61 TVNGDDIWWALSTLGLDNYADAVGRHLHKYREAERERT-EHNKGSNDSGN 109
>sp|Q9FGJ3|NFYB2_ARATH Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana
GN=NFYB2 PE=2 SV=1
Length = 190
Score = 159 bits (402), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 69/97 (71%), Positives = 86/97 (88%)
Query: 31 KEQERLLPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERRKT 90
+EQ+R LPIANV RIMK+ LPANAKISK+AKETMQECVSEFISF+T EAS+KC+KE+RKT
Sbjct: 26 REQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEASDKCQKEKRKT 85
Query: 91 VNGDDICWALGTLGFDDYAGPIRRYLHKYRELEGERA 127
+NGDD+ WA+ TLGF+DY P++ YL ++RE+EGER
Sbjct: 86 INGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGERT 122
>sp|Q5QMG3|NFYB2_ORYSJ Nuclear transcription factor Y subunit B-2 OS=Oryza sativa subsp.
japonica GN=NFYB2 PE=2 SV=1
Length = 178
Score = 158 bits (399), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 66/105 (62%), Positives = 92/105 (87%)
Query: 21 AGASSDDGGIKEQERLLPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEAS 80
+G+ GG++EQ+R LPIAN+ RIMK+ +PAN KI+K+AKET+QECVSEFISF+TSEAS
Sbjct: 23 SGSPPRSGGVREQDRFLPIANISRIMKKAVPANGKIAKDAKETLQECVSEFISFVTSEAS 82
Query: 81 EKCRKERRKTVNGDDICWALGTLGFDDYAGPIRRYLHKYRELEGE 125
+KC+KE+RKT+NG+D+ +A+GTLGF++Y P++ YLHKYRE+ G+
Sbjct: 83 DKCQKEKRKTINGEDLLFAMGTLGFEEYVDPLKIYLHKYREVIGD 127
>sp|Q9SLG0|NFYB1_ARATH Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana
GN=NFYB1 PE=1 SV=2
Length = 141
Score = 157 bits (397), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 73/124 (58%), Positives = 95/124 (76%), Gaps = 1/124 (0%)
Query: 15 NTGAAGAGASSDDGG-IKEQERLLPIANVGRIMKQILPANAKISKEAKETMQECVSEFIS 73
+T ++ AG + GG ++EQ+R LPIAN+ RIMK+ LP N KI K+AK+T+QECVSEFIS
Sbjct: 3 DTPSSPAGDGGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFIS 62
Query: 74 FITSEASEKCRKERRKTVNGDDICWALGTLGFDDYAGPIRRYLHKYRELEGERANQQDKA 133
FITSEAS+KC+KE+RKTVNGDD+ WA+ TLGF+DY P++ YL +YRELEG+
Sbjct: 63 FITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGDNKGSGKSG 122
Query: 134 SNSN 137
SN
Sbjct: 123 DGSN 126
>sp|P25209|NFYB_MAIZE Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2
SV=1
Length = 179
Score = 157 bits (396), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 65/96 (67%), Positives = 86/96 (89%)
Query: 30 IKEQERLLPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERRK 89
++EQ+R LPIAN+ RIMK+ +PAN KI+K+AKET+QECVSEFISFITSEAS+KC++E+RK
Sbjct: 29 VREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRK 88
Query: 90 TVNGDDICWALGTLGFDDYAGPIRRYLHKYRELEGE 125
T+NGDD+ WA+ TLGF+DY P++ YL KYRE+EG+
Sbjct: 89 TINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGD 124
>sp|Q60EQ4|NFYB3_ORYSJ Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp.
japonica GN=NFYB3 PE=1 SV=2
Length = 185
Score = 156 bits (395), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 65/96 (67%), Positives = 86/96 (89%)
Query: 30 IKEQERLLPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERRK 89
++EQ+R LPIAN+ RIMK+ +PAN KI+K+AKET+QECVSEFISFITSEAS+KC++E+RK
Sbjct: 36 VREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRK 95
Query: 90 TVNGDDICWALGTLGFDDYAGPIRRYLHKYRELEGE 125
T+NGDD+ WA+ TLGF+DY P++ YL KYRE+EG+
Sbjct: 96 TINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGD 131
>sp|Q67XJ2|NFYBA_ARATH Nuclear transcription factor Y subunit B-10 OS=Arabidopsis thaliana
GN=NFYB10 PE=2 SV=1
Length = 176
Score = 155 bits (392), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 64/96 (66%), Positives = 85/96 (88%)
Query: 30 IKEQERLLPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERRK 89
++EQ+R LPIAN+ RIMK+ LP N KI+K+AKETMQECVSEFISF+TSEAS+KC++E+RK
Sbjct: 27 VREQDRFLPIANISRIMKRGLPLNGKIAKDAKETMQECVSEFISFVTSEASDKCQREKRK 86
Query: 90 TVNGDDICWALGTLGFDDYAGPIRRYLHKYRELEGE 125
T+NGDD+ WA+ TLGF+DY P++ YL +YRE+EG+
Sbjct: 87 TINGDDLLWAMATLGFEDYIDPLKVYLMRYREMEGD 122
>sp|Q8VYK4|NFYB8_ARATH Nuclear transcription factor Y subunit B-8 OS=Arabidopsis thaliana
GN=NFYB8 PE=2 SV=1
Length = 173
Score = 152 bits (384), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 63/96 (65%), Positives = 85/96 (88%)
Query: 30 IKEQERLLPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERRK 89
++EQ+R LPIAN+ RIMK+ LPAN KI+K+AKE +QECVSEFISF+TSEAS+KC++E+RK
Sbjct: 28 VREQDRFLPIANISRIMKRGLPANGKIAKDAKEIVQECVSEFISFVTSEASDKCQREKRK 87
Query: 90 TVNGDDICWALGTLGFDDYAGPIRRYLHKYRELEGE 125
T+NGDD+ WA+ TLGF+DY P++ YL +YRE+EG+
Sbjct: 88 TINGDDLLWAMATLGFEDYMEPLKVYLMRYREMEGD 123
>sp|Q84W66|NFYB6_ARATH Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana
GN=NFYB6 PE=1 SV=2
Length = 234
Score = 149 bits (376), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 69/127 (54%), Positives = 95/127 (74%), Gaps = 1/127 (0%)
Query: 30 IKEQERLLPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERRK 89
++EQ+R +PIANV RIM++ILPA+AKIS ++KET+QECVSE+ISFIT EA+E+C++E+RK
Sbjct: 56 VREQDRFMPIANVIRIMRRILPAHAKISDDSKETIQECVSEYISFITGEANERCQREQRK 115
Query: 90 TVNGDDICWALGTLGFDDYAGPIRRYLHKYRELEGERANQQDKASNSNSNININEEREEP 149
T+ +D+ WA+ LGFDDY P+ YLH+YRELEGER S S +N + +R
Sbjct: 116 TITAEDVLWAMSKLGFDDYIEPLTLYLHRYRELEGERGVSCSAGSVSMTN-GLVVKRPNG 174
Query: 150 AGSSYGA 156
+ YGA
Sbjct: 175 TMTEYGA 181
>sp|Q65XK1|NFYB4_ORYSJ Nuclear transcription factor Y subunit B-4 OS=Oryza sativa subsp.
japonica GN=NFYB4 PE=2 SV=2
Length = 143
Score = 148 bits (374), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 63/95 (66%), Positives = 83/95 (87%)
Query: 31 KEQERLLPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERRKT 90
KEQ+R LPIAN+GRIM++ +P N KI+K++KE++QECVSEFISFITSEAS+KC KE+RKT
Sbjct: 21 KEQDRFLPIANIGRIMRRAVPENGKIAKDSKESVQECVSEFISFITSEASDKCLKEKRKT 80
Query: 91 VNGDDICWALGTLGFDDYAGPIRRYLHKYRELEGE 125
+NGDD+ W++GTLGF+DY P++ YL YRE EG+
Sbjct: 81 INGDDLIWSMGTLGFEDYVEPLKLYLRLYRETEGD 115
>sp|P25210|NFYB_PETMA Nuclear transcription factor Y subunit beta OS=Petromyzon marinus
GN=NFYB PE=2 SV=1
Length = 209
Score = 138 bits (348), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 61/98 (62%), Positives = 82/98 (83%), Gaps = 1/98 (1%)
Query: 31 KEQERLLPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERRKT 90
+EQ+ LPIANV RIMK +P++ KI+K+AKE +QECVSEFISFITSEASE+C +E+RKT
Sbjct: 54 REQDIYLPIANVARIMKTSIPSSGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKT 113
Query: 91 VNGDDICWALGTLGFDDYAGPIRRYLHKYRE-LEGERA 127
+NG+DI +A+ TLGFD Y P+++YL KYRE ++GE+
Sbjct: 114 INGEDILFAMSTLGFDSYVEPLKQYLQKYRESMKGEKG 151
>sp|Q54WV0|NFYB_DICDI Nuclear transcription factor Y subunit beta OS=Dictyostelium
discoideum GN=nfyB PE=3 SV=1
Length = 490
Score = 137 bits (346), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 61/99 (61%), Positives = 83/99 (83%)
Query: 31 KEQERLLPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERRKT 90
+EQ+R LPIAN+ RIMK+ LP NAK++K+AKET+Q+CVSEFISFITSEAS+KC++E+RKT
Sbjct: 47 REQDRYLPIANIIRIMKKALPNNAKVAKDAKETVQDCVSEFISFITSEASDKCQQEKRKT 106
Query: 91 VNGDDICWALGTLGFDDYAGPIRRYLHKYRELEGERANQ 129
+NG+DI A+ +LGF++Y P++ YL KYRE E N+
Sbjct: 107 INGEDIIAAMVSLGFENYVEPLKVYLLKYRETEKNSNNK 145
>sp|Q32KW0|NFYB_BOVIN Nuclear transcription factor Y subunit beta OS=Bos taurus GN=NFYB
PE=2 SV=1
Length = 207
Score = 136 bits (343), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 60/99 (60%), Positives = 79/99 (79%), Gaps = 1/99 (1%)
Query: 30 IKEQERLLPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERRK 89
+EQ+ LPIANV RIMK +P KI+K+AKE +QECVSEFISFITSEASE+C +E+RK
Sbjct: 52 FREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRK 111
Query: 90 TVNGDDICWALGTLGFDDYAGPIRRYLHKYRE-LEGERA 127
T+NG+DI +A+ TLGFD Y P++ YL K+RE ++GE+
Sbjct: 112 TINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKG 150
>sp|P25208|NFYB_HUMAN Nuclear transcription factor Y subunit beta OS=Homo sapiens GN=NFYB
PE=1 SV=2
Length = 207
Score = 136 bits (343), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 60/99 (60%), Positives = 79/99 (79%), Gaps = 1/99 (1%)
Query: 30 IKEQERLLPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERRK 89
+EQ+ LPIANV RIMK +P KI+K+AKE +QECVSEFISFITSEASE+C +E+RK
Sbjct: 52 FREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRK 111
Query: 90 TVNGDDICWALGTLGFDDYAGPIRRYLHKYRE-LEGERA 127
T+NG+DI +A+ TLGFD Y P++ YL K+RE ++GE+
Sbjct: 112 TINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKG 150
>sp|Q6RG77|NFYB_HORSE Nuclear transcription factor Y subunit beta OS=Equus caballus
GN=NFYB PE=2 SV=1
Length = 207
Score = 136 bits (342), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 60/99 (60%), Positives = 79/99 (79%), Gaps = 1/99 (1%)
Query: 30 IKEQERLLPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERRK 89
+EQ+ LPIANV RIMK +P KI+K+AKE +QECVSEFISFITSEASE+C +E+RK
Sbjct: 52 FREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRK 111
Query: 90 TVNGDDICWALGTLGFDDYAGPIRRYLHKYRE-LEGERA 127
T+NG+DI +A+ TLGFD Y P++ YL K+RE ++GE+
Sbjct: 112 TINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKG 150
>sp|P63140|NFYB_RAT Nuclear transcription factor Y subunit beta OS=Rattus norvegicus
GN=Nfyb PE=1 SV=1
Length = 207
Score = 136 bits (342), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 60/99 (60%), Positives = 79/99 (79%), Gaps = 1/99 (1%)
Query: 30 IKEQERLLPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERRK 89
+EQ+ LPIANV RIMK +P KI+K+AKE +QECVSEFISFITSEASE+C +E+RK
Sbjct: 52 FREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRK 111
Query: 90 TVNGDDICWALGTLGFDDYAGPIRRYLHKYRE-LEGERA 127
T+NG+DI +A+ TLGFD Y P++ YL K+RE ++GE+
Sbjct: 112 TINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKG 150
>sp|P63139|NFYB_MOUSE Nuclear transcription factor Y subunit beta OS=Mus musculus GN=Nfyb
PE=1 SV=1
Length = 207
Score = 136 bits (342), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 60/99 (60%), Positives = 79/99 (79%), Gaps = 1/99 (1%)
Query: 30 IKEQERLLPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERRK 89
+EQ+ LPIANV RIMK +P KI+K+AKE +QECVSEFISFITSEASE+C +E+RK
Sbjct: 52 FREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRK 111
Query: 90 TVNGDDICWALGTLGFDDYAGPIRRYLHKYRE-LEGERA 127
T+NG+DI +A+ TLGFD Y P++ YL K+RE ++GE+
Sbjct: 112 TINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKG 150
>sp|P25207|NFYB_CHICK Nuclear transcription factor Y subunit beta OS=Gallus gallus
GN=NFYB PE=2 SV=2
Length = 205
Score = 136 bits (342), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 60/99 (60%), Positives = 79/99 (79%), Gaps = 1/99 (1%)
Query: 30 IKEQERLLPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERRK 89
+EQ+ LPIANV RIMK +P KI+K+AKE +QECVSEFISFITSEASE+C +E+RK
Sbjct: 50 FREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRK 109
Query: 90 TVNGDDICWALGTLGFDDYAGPIRRYLHKYRE-LEGERA 127
T+NG+DI +A+ TLGFD Y P++ YL K+RE ++GE+
Sbjct: 110 TINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKG 148
>sp|Q9SFD8|NFYB9_ARATH Nuclear transcription factor Y subunit B-9 OS=Arabidopsis thaliana
GN=NFYB9 PE=1 SV=2
Length = 238
Score = 130 bits (326), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 58/118 (49%), Positives = 88/118 (74%), Gaps = 10/118 (8%)
Query: 21 AGASSDDGGI----------KEQERLLPIANVGRIMKQILPANAKISKEAKETMQECVSE 70
AGA + GI +EQ++ +PIANV RIM++ LP++AKIS +AKET+QECVSE
Sbjct: 38 AGAGDKNNGIVVQQQPPCVAREQDQYMPIANVIRIMRKTLPSHAKISDDAKETIQECVSE 97
Query: 71 FISFITSEASEKCRKERRKTVNGDDICWALGTLGFDDYAGPIRRYLHKYRELEGERAN 128
+ISF+T EA+E+C++E+RKT+ +DI WA+ LGFD+Y P+ ++++YRE+E +R +
Sbjct: 98 YISFVTGEANERCQREQRKTITAEDILWAMSKLGFDNYVDPLTVFINRYREIETDRGS 155
>sp|P13434|HAP3_YEAST Transcriptional activator HAP3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=HAP3 PE=1 SV=1
Length = 144
Score = 126 bits (316), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 56/104 (53%), Positives = 79/104 (75%)
Query: 18 AAGAGASSDDGGIKEQERLLPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITS 77
A+ +G+ ++EQ+R LPI NV R+MK LP +AK+SK+AKE MQECVSE ISF+TS
Sbjct: 23 ASSSGSLQQISTLREQDRWLPINNVARLMKNTLPPSAKVSKDAKECMQECVSELISFVTS 82
Query: 78 EASEKCRKERRKTVNGDDICWALGTLGFDDYAGPIRRYLHKYRE 121
EAS++C ++RKT+NG+DI +L LGF++YA ++ YL KYR+
Sbjct: 83 EASDRCAADKRKTINGEDILISLHALGFENYAEVLKIYLAKYRQ 126
>sp|P36611|HAP3_SCHPO Transcriptional activator hap3 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=hap3 PE=3 SV=1
Length = 116
Score = 124 bits (312), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 57/96 (59%), Positives = 75/96 (78%)
Query: 36 LLPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDD 95
LLPIANV RIMK LP NAKISKEAK+ +Q+CVSEFISF+T EASE+C +E+RKT+ G+D
Sbjct: 11 LLPIANVARIMKSALPENAKISKEAKDCVQDCVSEFISFVTGEASEQCTQEKRKTITGED 70
Query: 96 ICWALGTLGFDDYAGPIRRYLHKYRELEGERANQQD 131
+ AL TLGF++YA ++ L KYRE + A+ ++
Sbjct: 71 VLLALNTLGFENYAEVLKISLTKYREQQARSASMKE 106
>sp|P40914|HAP3_KLULA Transcriptional activator HAP3 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=HAP3 PE=3 SV=1
Length = 205
Score = 124 bits (310), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 60/134 (44%), Positives = 89/134 (66%), Gaps = 17/134 (12%)
Query: 30 IKEQERLLPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERRK 89
+ EQ+R LPI NV R+MK LPA K+SK+AKE MQECVSEFISF+TSEA ++C +RK
Sbjct: 20 LAEQDRWLPINNVARLMKNTLPATTKVSKDAKECMQECVSEFISFVTSEACDRCTSGKRK 79
Query: 90 TVNGDDICWALGTLGFDDYAGPIRRYLHKYRE--------------LEGERANQQDKASN 135
T+NG+DI +L LGF++YA ++ YL KYR+ +EG ++ +A +
Sbjct: 80 TINGEDILLSLHALGFENYAEVLKIYLAKYRQQQAIKNQMMYPKEDVEGSYTEEESRAED 139
Query: 136 SNSNININEEREEP 149
++ ++ +ER++P
Sbjct: 140 AD---HVTQERQQP 150
>sp|P25211|NFYB_XENLA Nuclear transcription factor Y subunit beta (Fragment) OS=Xenopus
laevis GN=nfyb PE=2 SV=1
Length = 122
Score = 97.1 bits (240), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 55/65 (84%), Gaps = 1/65 (1%)
Query: 64 MQECVSEFISFITSEASEKCRKERRKTVNGDDICWALGTLGFDDYAGPIRRYLHKYRE-L 122
+QECVSEFISFITSEASE+C +E+RKT+NG+DI +A+ TLGFD Y P++ YL K+RE +
Sbjct: 1 VQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAM 60
Query: 123 EGERA 127
+GE+
Sbjct: 61 KGEKG 65
>sp|Q6Z348|NFYB1_ORYSJ Nuclear transcription factor Y subunit B-1 OS=Oryza sativa subsp.
japonica GN=NFYB1 PE=1 SV=2
Length = 186
Score = 94.4 bits (233), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 58/94 (61%)
Query: 37 LPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDI 96
LP+AN+ R++K++LP AKI AK +C EF+ F+ EASEK + E R+TV +D
Sbjct: 34 LPMANLVRLIKKVLPGKAKIGGAAKGLTHDCAVEFVGFVGDEASEKAKAEHRRTVAPEDY 93
Query: 97 CWALGTLGFDDYAGPIRRYLHKYRELEGERANQQ 130
+ G LGFD Y P+ Y+H YRE E N++
Sbjct: 94 LGSFGDLGFDRYVDPMDAYIHGYREFERAGGNRR 127
>sp|Q9VJQ5|NC2B_DROME Protein Dr1 OS=Drosophila melanogaster GN=NC2beta PE=1 SV=1
Length = 183
Score = 73.2 bits (178), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 59/102 (57%), Gaps = 1/102 (0%)
Query: 34 ERLLPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNG 93
E LP A++ +I+K+++P +++ E++E + C SEFI I+SEA+E C +KT+N
Sbjct: 17 ELTLPRASINKIIKELVP-TVRVANESRELILNCCSEFIHLISSEANEVCNMRNKKTINA 75
Query: 94 DDICWALGTLGFDDYAGPIRRYLHKYRELEGERANQQDKASN 135
+ + AL LGF DY LH +E+ +R Q + N
Sbjct: 76 EHVLEALERLGFHDYKQEAEAVLHDCKEVAAKRRRQSTRLEN 117
>sp|Q55DJ5|NC2B_DICDI Protein Dr1 homolog OS=Dictyostelium discoideum GN=dr1 PE=3 SV=1
Length = 178
Score = 70.5 bits (171), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 55/94 (58%)
Query: 27 DGGIKEQERLLPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKE 86
D KE LP A V +++K++LP + K S E ++ + EC EFI I+SEA++ C +E
Sbjct: 3 DKNDKEDNLSLPKATVSKLIKEMLPQDVKCSNETRDLILECCVEFIHLISSEANDICGRE 62
Query: 87 RRKTVNGDDICWALGTLGFDDYAGPIRRYLHKYR 120
+++T+ + + AL LGF DY + K++
Sbjct: 63 QKRTIAAEHVIKALTELGFSDYTQKVSDVYDKHK 96
>sp|O14348|NC2B_SCHPO Negative cofactor 2 complex subunit beta OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=ncb2 PE=3 SV=1
Length = 161
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 57/108 (52%)
Query: 29 GIKEQERLLPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERR 88
G + E LP A V +++ ILP + +KEA++ + EC EFI ++SEA+E C KE +
Sbjct: 4 GFADDELSLPKATVQKMVSDILPVDLTFTKEARDLLIECCVEFIHLVSSEANEICEKEAK 63
Query: 89 KTVNGDDICWALGTLGFDDYAGPIRRYLHKYRELEGERANQQDKASNS 136
KT+ + I AL L F +Y +++E + R + K S
Sbjct: 64 KTIAAEHIIKALENLEFKEYIAEALEVAAEHKEQQKNREKKSSKFEQS 111
>sp|Q5XI68|NC2B_RAT Protein Dr1 OS=Rattus norvegicus GN=Dr1 PE=2 SV=1
Length = 176
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 66/109 (60%), Gaps = 5/109 (4%)
Query: 37 LPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDI 96
+P A + +++K+ LP N +++ +A+E + C +EFI I+SEA+E C K +KT++ + +
Sbjct: 13 IPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHV 71
Query: 97 CWALGTLGFDDYAGPIRRYLHKYRELEGERANQQDKASNSNSNININEE 145
AL +LGF Y ++ L + + + A ++ KAS+ N+ I EE
Sbjct: 72 IQALESLGFGSYISEVKEVLQECKTV----ALKRRKASSRLENLGIPEE 116
>sp|Q91WV0|NC2B_MOUSE Protein Dr1 OS=Mus musculus GN=Dr1 PE=2 SV=1
Length = 176
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 66/109 (60%), Gaps = 5/109 (4%)
Query: 37 LPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDI 96
+P A + +++K+ LP N +++ +A+E + C +EFI I+SEA+E C K +KT++ + +
Sbjct: 13 IPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHV 71
Query: 97 CWALGTLGFDDYAGPIRRYLHKYRELEGERANQQDKASNSNSNININEE 145
AL +LGF Y ++ L + + + A ++ KAS+ N+ I EE
Sbjct: 72 IQALESLGFGSYISEVKEVLQECKTV----ALKRRKASSRLENLGIPEE 116
>sp|Q01658|NC2B_HUMAN Protein Dr1 OS=Homo sapiens GN=DR1 PE=1 SV=1
Length = 176
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 66/109 (60%), Gaps = 5/109 (4%)
Query: 37 LPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDI 96
+P A + +++K+ LP N +++ +A+E + C +EFI I+SEA+E C K +KT++ + +
Sbjct: 13 IPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHV 71
Query: 97 CWALGTLGFDDYAGPIRRYLHKYRELEGERANQQDKASNSNSNININEE 145
AL +LGF Y ++ L + + + A ++ KAS+ N+ I EE
Sbjct: 72 IQALESLGFGSYISEVKEVLQECKTV----ALKRRKASSRLENLGIPEE 116
>sp|Q5ZMV3|NC2B_CHICK Protein Dr1 OS=Gallus gallus GN=DR1 PE=2 SV=1
Length = 176
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 66/109 (60%), Gaps = 5/109 (4%)
Query: 37 LPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDI 96
+P A + +++K+ LP N +++ +A+E + C +EFI I+SEA+E C K +KT++ + +
Sbjct: 13 IPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHV 71
Query: 97 CWALGTLGFDDYAGPIRRYLHKYRELEGERANQQDKASNSNSNININEE 145
AL +LGF Y ++ L + + + A ++ KAS+ N+ I EE
Sbjct: 72 IQALESLGFGSYISEVKEVLQECKTV----ALKRRKASSRLENLGIPEE 116
>sp|P49592|NC2B_ARATH Protein Dr1 homolog OS=Arabidopsis thaliana GN=DR1 PE=2 SV=1
Length = 159
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 57/89 (64%), Gaps = 2/89 (2%)
Query: 37 LPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDI 96
LP A + +I+K++LP + +++++A++ + EC EFI+ ++SE+++ C KE ++T+ + +
Sbjct: 16 LPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNDVCNKEDKRTIAPEHV 75
Query: 97 CWALGTLGFDDYAGPIRRYL--HKYRELE 123
AL LGF +Y + HKY ++
Sbjct: 76 LKALQVLGFGEYIEEVYAAYEQHKYETMQ 104
>sp|Q5R4W3|DPOE3_PONAB DNA polymerase epsilon subunit 3 OS=Pongo abelii GN=POLE3 PE=2 SV=1
Length = 147
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 46/84 (54%)
Query: 37 LPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDI 96
LP A + RI+K+ LP ISKEA+ + S F+ + TS A+ K +RKT+N D+
Sbjct: 10 LPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLNASDV 69
Query: 97 CWALGTLGFDDYAGPIRRYLHKYR 120
A+ + F + P++ L YR
Sbjct: 70 LSAMEEMEFQRFVTPLKEALEAYR 93
>sp|Q9NRF9|DPOE3_HUMAN DNA polymerase epsilon subunit 3 OS=Homo sapiens GN=POLE3 PE=1 SV=1
Length = 147
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 46/84 (54%)
Query: 37 LPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDI 96
LP A + RI+K+ LP ISKEA+ + S F+ + TS A+ K +RKT+N D+
Sbjct: 10 LPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLNASDV 69
Query: 97 CWALGTLGFDDYAGPIRRYLHKYR 120
A+ + F + P++ L YR
Sbjct: 70 LSAMEEMEFQRFVTPLKEALEAYR 93
>sp|Q3SZN5|DPOE3_BOVIN DNA polymerase epsilon subunit 3 OS=Bos taurus GN=POLE3 PE=2 SV=1
Length = 147
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 46/84 (54%)
Query: 37 LPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDI 96
LP A + RI+K+ LP ISKEA+ + S F+ + TS A+ K +RKT+N D+
Sbjct: 10 LPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLNASDV 69
Query: 97 CWALGTLGFDDYAGPIRRYLHKYR 120
A+ + F + P++ L YR
Sbjct: 70 LSAMEEMEFQRFVTPLKEALEAYR 93
>sp|Q642A5|DPOE3_RAT DNA polymerase epsilon subunit 3 OS=Rattus norvegicus GN=Pole3 PE=2
SV=1
Length = 145
Score = 60.1 bits (144), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 46/84 (54%)
Query: 37 LPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDI 96
LP A + RI+K+ LP ISKEA+ + S F+ + TS A+ K +RKT+N D+
Sbjct: 10 LPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLNASDV 69
Query: 97 CWALGTLGFDDYAGPIRRYLHKYR 120
A+ + F + P++ L YR
Sbjct: 70 LSAMEEMEFQRFVTPLKEALEAYR 93
>sp|Q9JKP7|DPOE3_MOUSE DNA polymerase epsilon subunit 3 OS=Mus musculus GN=Pole3 PE=2 SV=1
Length = 145
Score = 60.1 bits (144), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 46/84 (54%)
Query: 37 LPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDI 96
LP A + RI+K+ LP ISKEA+ + S F+ + TS A+ K +RKT+N D+
Sbjct: 10 LPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLNASDV 69
Query: 97 CWALGTLGFDDYAGPIRRYLHKYR 120
A+ + F + P++ L YR
Sbjct: 70 LSAMEEMEFQRFITPLKEALEAYR 93
>sp|P87174|DPB4_SCHPO DNA polymerase epsilon subunit D OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=dpb4 PE=1 SV=1
Length = 210
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 46/83 (55%)
Query: 37 LPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDI 96
LP + + R++K +LP + + KEA + M + F+SF+TS + E RK + D+
Sbjct: 17 LPRSIIMRLVKGVLPEKSLVQKEALKAMINSATLFVSFLTSASGEIATNNNRKILMPQDV 76
Query: 97 CWALGTLGFDDYAGPIRRYLHKY 119
AL + + +++ ++++L Y
Sbjct: 77 LNALDEIEYPEFSKTLKKHLEAY 99
>sp|Q92317|NCB2_YEAST Negative cofactor 2 complex subunit beta OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NCB2 PE=1
SV=1
Length = 146
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 45/84 (53%)
Query: 37 LPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDI 96
LP A V +++ +IL + +K+A+E + EFI ++S ASE E +KT+ + +
Sbjct: 10 LPKATVQKMISEILDQDLMFTKDAREIIINSGIEFIMILSSMASEMADNEAKKTIAPEHV 69
Query: 97 CWALGTLGFDDYAGPIRRYLHKYR 120
AL L ++++ + L ++
Sbjct: 70 IKALEELEYNEFIPFLEEILLNFK 93
>sp|Q04603|DPB4_YEAST DNA polymerase epsilon subunit D OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DPB4 PE=1 SV=1
Length = 196
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 75/164 (45%), Gaps = 11/164 (6%)
Query: 30 IKEQER------LLP---IANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEAS 80
IKEQE L P I N+ R + Q I+K+A +Q + F++ + A
Sbjct: 20 IKEQENITIQDLLFPKSTIVNLAREVPQQSGKKLLINKDASLALQRGATVFVNHLLLFAR 79
Query: 81 EKCRKERRKTVNGDDICWALGTLGFDDYAGPIRRYLHKYRELEGERANQQDKAS--NSNS 138
E + + +K+ + DD+ AL +G GP+R L +Y+ +R ++ + +++
Sbjct: 80 EIAKSQDKKSCSVDDVLSALDHIGHSALKGPVRDKLDEYQAAVEQRKKEKLDSGEVDADG 139
Query: 139 NININEEREEPAGSSYGADDEQITRNQALASISFKSNVNERSNS 182
+I++ E++E DE + AL + S +++ S
Sbjct: 140 DIDMGEDKENVPVEKVKEHDEIEEQGDALQDVEESSEKKQKTES 183
>sp|Q6CHS6|DPB4_YARLI DNA polymerase epsilon subunit D OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=DPB4 PE=3 SV=1
Length = 163
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 44/91 (48%)
Query: 36 LLPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDD 95
L P + + + K+ LP +A ISK+A +Q + F+S++ S + RK + D
Sbjct: 36 LYPKSTIKNLAKETLPDDAIISKDALTAIQRAATLFVSYMASHGNASAEAGGRKKITPQD 95
Query: 96 ICWALGTLGFDDYAGPIRRYLHKYRELEGER 126
+ AL + + + + ++++ + +R
Sbjct: 96 VFVALKDVDLAQFVPSVTQSVNEFEQEVAQR 126
>sp|Q6BIP4|DPB4_DEBHA DNA polymerase epsilon subunit D OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=DPB4 PE=3 SV=2
Length = 247
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Query: 34 ERLLPIANVGRIMKQILPA-------NAKISKEAKETMQECVSEFISFITSEASEKCRKE 86
E L P A V ++ K I+ A N ++K++ +Q + F+S + +A + + E
Sbjct: 28 EILFPRATVQKLAKNIMNASSDEGASNMILAKDSMIALQRSSTVFVSHLMFQARQISKDE 87
Query: 87 RRKTVNGDDICWALGTLGFDDYAGPIRRYLHKY 119
RKT+N DI AL F + +++ L +
Sbjct: 88 GRKTINAQDILSALEKAEFSGFIPEVKQKLSVF 120
>sp|Q58342|HJA2_METJA Probable archaeal histone 2 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0932 PE=3 SV=1
Length = 67
Score = 38.9 bits (89), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 37 LPIANVGRIMKQILPANA-KISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDD 95
LP+A RI+K+ A A ++S+ A E + E V E I EA E + +RKTV +D
Sbjct: 4 LPVAPFERILKK---AGAERVSRAAAEYLAEAVEEIALEIAKEAVELAKHAKRKTVKVED 60
Query: 96 ICWAL 100
I AL
Sbjct: 61 IKLAL 65
>sp|Q57632|HJA1_METJA Probable archaeal histone 1 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0168 PE=3 SV=1
Length = 67
Score = 38.9 bits (89), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 37 LPIANVGRIMKQILPANA-KISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDD 95
LP+A RI+K+ A A ++S+ A E + E V E I EA E + +RKTV +D
Sbjct: 4 LPVAPFERILKK---AGAERVSRAAAEYLAEAVEEIALEIAKEAVELAKHAKRKTVKVED 60
Query: 96 ICWAL 100
I AL
Sbjct: 61 IKLAL 65
>sp|P50483|HMT1_METTH DNA-binding protein HMt-1.1 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=hmtA1 PE=3 SV=2
Length = 68
Score = 38.1 bits (87), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 37 LPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDI 96
LPIA VGRI+K +IS +AKE + + + E I+ +A E + RKTV DI
Sbjct: 4 LPIAPVGRIIKN--AGAQRISDDAKEALAKALEEMGEEISRKAVELAKHAGRKTVKATDI 61
Query: 97 CWALGTL 103
A L
Sbjct: 62 EMAAKQL 68
>sp|Q59041|HMVA_METJA DNA-binding protein HmvA OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=hmvA PE=1 SV=1
Length = 96
Score = 38.1 bits (87), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 36 LLPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDD 95
+LP A V RIMKQ + IS EA + + + E I T A + RKE RKT+ D
Sbjct: 1 MLPKATVKRIMKQ--HTDFNISAEAVDELCNMLEEIIKITTEVAEQNARKEGRKTIKARD 58
Query: 96 I 96
I
Sbjct: 59 I 59
>sp|P19267|HMFB_METFE DNA-binding protein HMf-2 OS=Methanothermus fervidus GN=hmfB PE=1
SV=1
Length = 69
Score = 37.7 bits (86), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 37 LPIANVGRIMKQILPANA-KISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDD 95
LPIA +GRI+K A A ++S +A+ T+ + + E I SEA + R RKT+ +D
Sbjct: 3 LPIAPIGRIIKD---AGAERVSDDARITLAKILEEMGRDIASEAIKLARHAGRKTIKAED 59
Query: 96 ICWAL 100
I A+
Sbjct: 60 IELAV 64
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.126 0.347
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,050,004
Number of Sequences: 539616
Number of extensions: 2576776
Number of successful extensions: 8682
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 60
Number of HSP's that attempted gapping in prelim test: 8529
Number of HSP's gapped (non-prelim): 198
length of query: 188
length of database: 191,569,459
effective HSP length: 111
effective length of query: 77
effective length of database: 131,672,083
effective search space: 10138750391
effective search space used: 10138750391
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 58 (26.9 bits)