Query 044287
Match_columns 188
No_of_seqs 150 out of 629
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 23:08:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044287.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044287hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jfi_B DR1 protein, transcript 100.0 2E-34 7E-39 238.1 9.4 124 30-154 9-136 (179)
2 2byk_B Chrac-14; nucleosome sl 100.0 7.5E-29 2.5E-33 194.8 9.9 98 32-129 5-102 (128)
3 1n1j_A NF-YB; histone-like PAI 100.0 1.8E-28 6.2E-33 181.8 9.5 92 30-121 2-93 (93)
4 3b0c_W CENP-W, centromere prot 99.8 1.6E-21 5.5E-26 140.0 6.4 68 35-103 3-70 (76)
5 1f1e_A Histone fold protein; a 99.8 1.3E-20 4.5E-25 152.3 7.2 75 35-110 3-77 (154)
6 3b0c_T CENP-T, centromere prot 99.8 1.1E-18 3.7E-23 134.1 8.7 90 33-124 4-95 (111)
7 1b67_A Protein (histone HMFA); 99.8 8.7E-19 3E-23 122.5 7.2 66 36-103 2-67 (68)
8 1f1e_A Histone fold protein; a 99.7 3.8E-17 1.3E-21 132.1 7.7 75 26-102 72-146 (154)
9 2byk_A Chrac-16; nucleosome sl 99.7 1.2E-17 4E-22 133.1 3.3 95 33-128 16-114 (140)
10 1id3_B Histone H4; nucleosome 99.7 7.5E-17 2.6E-21 122.1 7.0 86 21-108 13-98 (102)
11 2hue_C Histone H4; mini beta s 99.7 9.4E-17 3.2E-21 117.3 6.5 78 29-108 3-80 (84)
12 4g92_C HAPE; transcription fac 99.6 1.5E-15 5.2E-20 117.5 6.9 76 33-109 38-113 (119)
13 1tzy_D Histone H4-VI; histone- 99.6 2E-15 6.8E-20 114.0 7.2 84 23-108 16-99 (103)
14 1n1j_B NF-YC; histone-like PAI 99.6 2.6E-15 8.9E-20 112.2 6.8 77 33-110 16-92 (97)
15 2yfw_B Histone H4, H4; cell cy 99.6 2.1E-15 7.1E-20 114.0 6.2 85 22-108 15-99 (103)
16 1ku5_A HPHA, archaeal histon; 99.6 4.5E-15 1.5E-19 104.5 6.8 64 36-101 6-69 (70)
17 1jfi_A Transcription regulator 99.3 4.2E-12 1.4E-16 95.1 5.4 76 34-110 9-84 (98)
18 2hue_B Histone H3; mini beta s 99.1 1.6E-10 5.4E-15 83.8 6.5 71 34-104 1-74 (77)
19 2yfv_A Histone H3-like centrom 99.0 6.6E-10 2.3E-14 84.1 5.9 72 30-101 21-98 (100)
20 3nqj_A Histone H3-like centrom 99.0 9.7E-10 3.3E-14 80.5 6.0 70 35-104 2-76 (82)
21 3nqu_A Histone H3-like centrom 98.9 1.8E-09 6.1E-14 86.1 5.5 75 31-105 56-135 (140)
22 3r45_A Histone H3-like centrom 98.9 2E-09 6.7E-14 87.2 5.8 73 31-103 72-149 (156)
23 1tzy_C Histone H3; histone-fol 98.9 2.3E-09 7.8E-14 85.1 6.0 74 31-104 57-133 (136)
24 1taf_B TFIID TBP associated fa 98.8 1E-08 3.5E-13 73.0 7.4 65 35-101 5-69 (70)
25 4dra_A Centromere protein S; D 98.6 6.1E-08 2.1E-12 74.8 7.4 76 41-122 32-108 (113)
26 3v9r_A MHF1, uncharacterized p 98.6 9.1E-08 3.1E-12 71.1 6.9 62 41-102 17-79 (90)
27 3b0b_B CENP-S, centromere prot 98.6 1.1E-07 3.9E-12 72.6 7.6 76 41-122 24-100 (107)
28 3vh5_A CENP-S; histone fold, c 98.6 6.2E-08 2.1E-12 77.2 6.0 77 41-123 24-101 (140)
29 1taf_A TFIID TBP associated fa 98.5 2.2E-07 7.4E-12 65.8 6.9 60 41-102 6-65 (68)
30 2ly8_A Budding yeast chaperone 98.5 1.5E-07 5.2E-12 73.3 5.6 55 53-107 62-116 (121)
31 1f66_C Histone H2A.Z; nucleoso 98.4 6.4E-07 2.2E-11 70.2 6.7 70 33-102 24-93 (128)
32 2nqb_C Histone H2A; nucleosome 98.3 9.7E-07 3.3E-11 68.7 6.9 69 33-102 20-88 (123)
33 2l5a_A Histone H3-like centrom 98.3 2.5E-07 8.5E-12 79.2 3.7 61 42-104 167-227 (235)
34 1tzy_A Histone H2A-IV; histone 98.3 1.2E-06 4.3E-11 68.6 6.9 69 33-102 22-90 (129)
35 2f8n_G Core histone macro-H2A. 98.3 1.5E-06 5.3E-11 67.3 6.9 69 33-102 19-87 (120)
36 1id3_C Histone H2A.1; nucleoso 98.3 1.2E-06 4.1E-11 68.9 6.3 69 33-102 22-90 (131)
37 2f8n_K Histone H2A type 1; nuc 98.2 2.6E-06 9E-11 68.4 6.6 69 33-102 41-109 (149)
38 2l5a_A Histone H3-like centrom 98.2 1.3E-05 4.4E-10 68.6 10.6 107 34-140 9-125 (235)
39 2nqb_D Histone H2B; nucleosome 98.1 4.3E-06 1.5E-10 65.4 6.4 63 40-103 37-99 (123)
40 1tzy_B Histone H2B; histone-fo 98.1 5.5E-06 1.9E-10 65.0 6.3 64 39-103 39-102 (126)
41 2jss_A Chimera of histone H2B. 98.1 5.7E-06 2E-10 68.2 6.6 70 33-102 102-171 (192)
42 4dra_E Centromere protein X; D 97.9 4.6E-05 1.6E-09 55.9 7.5 69 34-102 10-79 (84)
43 2jss_A Chimera of histone H2B. 97.8 4.6E-05 1.6E-09 62.8 7.0 63 40-103 7-69 (192)
44 3b0b_C CENP-X, centromere prot 97.8 6.9E-05 2.3E-09 54.5 7.0 70 33-102 5-75 (81)
45 1bh9_B TAFII28; histone fold, 97.7 0.00012 4.2E-09 54.0 7.0 67 36-104 16-83 (89)
46 1h3o_B Transcription initiatio 97.6 0.00019 6.6E-09 51.6 7.4 66 36-102 5-70 (76)
47 2ly8_A Budding yeast chaperone 96.0 0.01 3.4E-07 46.1 5.2 64 36-100 1-73 (121)
48 3v9r_B MHF2, uncharacterized p 95.9 0.012 4E-07 43.5 5.1 49 37-85 2-51 (88)
49 3uk6_A RUVB-like 2; hexameric 87.7 0.89 3.1E-05 38.0 5.8 66 37-102 259-329 (368)
50 3ksy_A SOS-1, SON of sevenless 85.3 1.7 5.9E-05 43.2 7.3 67 34-102 102-168 (1049)
51 1fnn_A CDC6P, cell division co 82.1 4.8 0.00016 33.3 7.7 77 37-113 193-284 (389)
52 2c9o_A RUVB-like 1; hexameric 78.0 2.4 8.3E-05 37.5 4.8 66 37-102 366-436 (456)
53 2v1u_A Cell division control p 76.2 2.3 8E-05 35.0 3.9 66 39-104 203-277 (387)
54 3kw6_A 26S protease regulatory 72.0 2.3 7.9E-05 28.7 2.4 31 72-102 42-72 (78)
55 2qby_A CDC6 homolog 1, cell di 69.0 6.2 0.00021 32.3 4.9 70 37-106 197-275 (386)
56 1khy_A CLPB protein; alpha hel 64.4 12 0.0004 27.4 5.2 38 55-104 5-42 (148)
57 2y1q_A CLPC N-domain, negative 62.7 5.6 0.00019 29.3 3.1 36 55-102 5-40 (150)
58 2dzn_B 26S protease regulatory 62.3 5.4 0.00018 27.2 2.8 29 76-104 41-69 (82)
59 3fh2_A Probable ATP-dependent 62.2 6.9 0.00024 29.1 3.6 37 55-103 6-42 (146)
60 1wwi_A Hypothetical protein TT 61.4 17 0.00059 28.8 5.8 58 37-96 3-60 (148)
61 3vlf_B 26S protease regulatory 61.4 5.3 0.00018 27.8 2.6 34 72-105 40-73 (88)
62 3k1j_A LON protease, ATP-depen 59.8 24 0.00082 32.4 7.4 49 54-102 313-374 (604)
63 1g8p_A Magnesium-chelatase 38 59.8 16 0.00055 29.8 5.7 50 53-102 265-321 (350)
64 2r44_A Uncharacterized protein 59.7 28 0.00095 28.5 7.2 50 53-102 224-296 (331)
65 3fes_A ATP-dependent CLP endop 58.7 7.2 0.00025 29.1 3.1 39 54-104 6-44 (145)
66 3aji_B S6C, proteasome (prosom 56.8 5 0.00017 27.2 1.8 33 72-104 40-72 (83)
67 2krk_A 26S protease regulatory 56.7 6.6 0.00022 27.4 2.4 32 72-103 50-81 (86)
68 1k6k_A ATP-dependent CLP prote 56.3 6.7 0.00023 28.7 2.6 33 56-100 2-34 (143)
69 1r4v_A Hypothetical protein AQ 55.4 15 0.00051 29.9 4.6 64 31-96 19-84 (171)
70 2qby_B CDC6 homolog 3, cell di 50.7 14 0.00048 30.5 3.9 66 37-104 197-271 (384)
71 2chg_A Replication factor C sm 48.3 19 0.00066 26.4 4.0 63 37-101 161-224 (226)
72 3fes_A ATP-dependent CLP endop 45.6 20 0.0007 26.5 3.8 40 53-104 79-118 (145)
73 3bos_A Putative DNA replicatio 43.4 41 0.0014 25.2 5.3 62 38-101 175-241 (242)
74 1njg_A DNA polymerase III subu 42.1 27 0.00091 25.8 4.0 64 37-101 185-249 (250)
75 1in4_A RUVB, holliday junction 40.6 51 0.0018 27.5 5.9 68 40-107 183-254 (334)
76 3zri_A CLPB protein, CLPV; cha 39.6 17 0.0006 28.4 2.7 37 55-103 24-60 (171)
77 3fh2_A Probable ATP-dependent 39.3 51 0.0017 24.2 5.1 39 54-104 80-118 (146)
78 3h4m_A Proteasome-activating n 38.2 20 0.00068 28.5 2.9 33 71-103 226-258 (285)
79 2kru_A Light-independent proto 37.9 15 0.0005 25.2 1.7 51 53-104 3-54 (63)
80 2f3n_A SH3 and multiple ankyri 37.3 14 0.00047 25.1 1.5 23 91-113 5-27 (76)
81 2d8c_A Phosphatidylcholine:cer 35.6 13 0.00045 26.9 1.2 22 91-112 20-41 (97)
82 3fwb_A Cell division control p 35.3 1.1E+02 0.0038 21.1 7.3 36 78-113 100-135 (161)
83 2i7a_A Calpain 13; calcium-dep 34.1 1.5E+02 0.005 22.2 9.2 29 77-106 79-111 (174)
84 1k6k_A ATP-dependent CLP prote 34.1 67 0.0023 23.1 5.0 38 54-103 78-115 (143)
85 3bq7_A Diacylglycerol kinase d 34.1 16 0.00056 25.0 1.5 24 90-113 9-32 (81)
86 1w5s_A Origin recognition comp 31.9 92 0.0031 25.7 6.1 68 37-104 215-294 (412)
87 1lv7_A FTSH; alpha/beta domain 31.8 34 0.0012 26.9 3.2 33 72-104 221-253 (257)
88 2l09_A ASR4154 protein; proto- 31.6 16 0.00055 24.9 1.1 49 54-103 3-52 (62)
89 2gle_A Neurabin-1; SAM domain, 31.6 17 0.00058 24.2 1.2 22 91-112 7-28 (74)
90 4b4t_L 26S protease subunit RP 30.8 28 0.00097 31.4 2.9 32 71-102 390-421 (437)
91 4b4t_M 26S protease regulatory 30.7 29 0.00098 31.3 2.9 33 71-103 390-422 (434)
92 4b4t_I 26S protease regulatory 30.5 29 0.00098 31.7 2.9 66 36-102 351-422 (437)
93 1uxc_A FRUR (1-57), fructose r 30.3 65 0.0022 21.2 4.0 36 35-71 10-45 (65)
94 3pm8_A PFCDPK2, calcium-depend 30.1 67 0.0023 24.2 4.6 80 35-116 20-99 (197)
95 4b4t_J 26S protease regulatory 29.7 30 0.001 31.1 2.8 32 71-102 357-388 (405)
96 4b4t_K 26S protease regulatory 29.2 27 0.00091 31.4 2.4 32 71-102 382-413 (428)
97 2qz4_A Paraplegin; AAA+, SPG7, 29.2 23 0.00079 27.6 1.8 33 71-103 217-249 (262)
98 2y1q_A CLPC N-domain, negative 29.0 49 0.0017 24.0 3.5 37 54-102 78-114 (150)
99 4b4t_H 26S protease regulatory 28.3 30 0.001 31.8 2.6 32 71-102 418-449 (467)
100 1bh9_A TAFII18; histone fold, 26.9 1.2E+02 0.0041 19.0 5.0 39 42-81 6-44 (45)
101 3fs7_A Parvalbumin, thymic; ca 26.8 1.1E+02 0.0038 20.2 4.8 78 36-115 6-86 (109)
102 3zri_A CLPB protein, CLPV; cha 26.6 58 0.002 25.3 3.7 38 53-102 96-134 (171)
103 1kw4_A Polyhomeotic; SAM domai 26.4 26 0.0009 24.7 1.5 25 90-114 16-41 (89)
104 3pxg_A Negative regulator of g 26.4 69 0.0023 28.3 4.6 38 55-104 5-42 (468)
105 3pfi_A Holliday junction ATP-d 26.2 98 0.0033 25.1 5.2 68 39-106 186-257 (338)
106 1wlz_A DJBP, CAP-binding prote 26.0 1.3E+02 0.0044 19.8 5.0 29 78-106 28-56 (105)
107 3vfd_A Spastin; ATPase, microt 25.7 2.3E+02 0.0078 23.8 7.6 67 40-106 285-368 (389)
108 2lfh_A DNA-binding protein inh 25.5 1.2E+02 0.004 21.0 4.6 54 19-76 13-66 (68)
109 3mse_B Calcium-dependent prote 25.5 1.9E+02 0.0066 20.9 7.4 29 78-106 43-71 (180)
110 5pal_A Parvalbumin; calcium-bi 25.0 56 0.0019 21.7 3.0 78 37-116 6-86 (109)
111 1khy_A CLPB protein; alpha hel 25.0 60 0.002 23.4 3.3 35 55-101 82-116 (148)
112 4ds7_A Calmodulin, CAM; protei 24.5 1.7E+02 0.0056 19.8 8.3 40 78-117 88-127 (147)
113 1hqc_A RUVB; extended AAA-ATPa 24.0 61 0.0021 26.0 3.5 70 37-106 168-241 (324)
114 1ofh_A ATP-dependent HSL prote 23.7 77 0.0026 25.0 4.0 52 54-105 233-301 (310)
115 3i5g_B Myosin regulatory light 23.6 1.3E+02 0.0045 21.8 5.1 53 51-115 5-57 (153)
116 1tiz_A Calmodulin-related prot 23.1 86 0.0029 18.5 3.3 29 79-107 6-34 (67)
117 3b9p_A CG5977-PA, isoform A; A 22.9 1.2E+02 0.0043 24.0 5.1 60 54-113 207-282 (297)
118 1ixz_A ATP-dependent metallopr 22.8 50 0.0017 25.9 2.7 58 43-101 192-254 (254)
119 1pva_A Parvalbumin; calcium bi 21.4 1.8E+02 0.006 19.1 5.0 27 78-104 46-72 (110)
120 3pvs_A Replication-associated 21.2 1.1E+02 0.0038 27.1 4.9 67 37-104 165-245 (447)
121 1iy2_A ATP-dependent metallopr 21.1 57 0.0019 26.1 2.7 59 42-101 215-278 (278)
122 2lmt_A Calmodulin-related prot 20.1 1.7E+02 0.006 20.5 5.0 40 77-116 86-125 (148)
No 1
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=100.00 E-value=2e-34 Score=238.09 Aligned_cols=124 Identities=26% Similarity=0.483 Sum_probs=115.5
Q ss_pred CccccccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccCHHHHhhhcCCCcch
Q 044287 30 IKEQERLLPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDICWALGTLGFDDYA 109 (188)
Q Consensus 30 ~~~~d~~LPkA~I~RImK~~LP~~~rISkDA~~al~eca~eFI~~LtseAne~a~~~kRKTIt~eDVl~AL~~LGF~dyi 109 (188)
...+|+.||+|+|.||||++|| +++||+||+++|++||++||+|||++|+++|.+++||||+++||++||+.|||++|+
T Consensus 9 ~~~eD~~LP~A~V~RImK~alp-~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~LgF~~fv 87 (179)
T 1jfi_B 9 GNDDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYI 87 (179)
T ss_dssp ---CCCCCCHHHHHHHHHHHST-TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHTTGGGH
T ss_pred CchhhhhcCHHHHHHHHHHhCC-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcChHHHH
Confidence 4458899999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhccccCCcch----hhhhhhcCCCCCCC
Q 044287 110 GPIRRYLHKYRELEGERANQQDKASNSNSNI----NINEEREEPAGSSY 154 (188)
Q Consensus 110 ~~lk~~L~~~re~~~~K~~~~~K~~~sg~~~----~~~~~~~~~~~~~~ 154 (188)
++|+.+|+.||++++.|+++++|++++|+++ +.|+++|+.++..+
T Consensus 88 ~~lk~~L~~yre~~~~kkr~~~K~~~sg~~~Eel~~~Qqelf~~Ar~~~ 136 (179)
T 1jfi_B 88 SEVKEVLQECKTVALKRRKASSRLENLGIPEEELLRQQQELFAKARQQQ 136 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCccccchhhccCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999986 55889998777643
No 2
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=99.95 E-value=7.5e-29 Score=194.85 Aligned_cols=98 Identities=31% Similarity=0.519 Sum_probs=88.1
Q ss_pred cccccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccCHHHHhhhcCCCcchHH
Q 044287 32 EQERLLPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDICWALGTLGFDDYAGP 111 (188)
Q Consensus 32 ~~d~~LPkA~I~RImK~~LP~~~rISkDA~~al~eca~eFI~~LtseAne~a~~~kRKTIt~eDVl~AL~~LGF~dyi~~ 111 (188)
.+++.||+|+|.||||+++|++.+||+||+.+|++||++||+|||++|+++|.+++||||+++||++||+.+||.+|+++
T Consensus 5 ~~d~~LP~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~f~~fl~~ 84 (128)
T 2byk_B 5 IEDLNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDFESFVPS 84 (128)
T ss_dssp ------CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCTTTHHH
T ss_pred cccccCCHHHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhh
Q 044287 112 IRRYLHKYRELEGERANQ 129 (188)
Q Consensus 112 lk~~L~~~re~~~~K~~~ 129 (188)
|+.+|+.|++.++.|+..
T Consensus 85 lk~~l~~yr~~~~~kk~~ 102 (128)
T 2byk_B 85 LTQDLEVYRKVVKEKKES 102 (128)
T ss_dssp HHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHhhhhh
Confidence 999999999999887654
No 3
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.95 E-value=1.8e-28 Score=181.85 Aligned_cols=92 Identities=63% Similarity=1.064 Sum_probs=85.8
Q ss_pred CccccccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccCHHHHhhhcCCCcch
Q 044287 30 IKEQERLLPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDICWALGTLGFDDYA 109 (188)
Q Consensus 30 ~~~~d~~LPkA~I~RImK~~LP~~~rISkDA~~al~eca~eFI~~LtseAne~a~~~kRKTIt~eDVl~AL~~LGF~dyi 109 (188)
++++|+.||+|+|.||||+.+|++.+||+||+.+|++||++||.||+++|+++|.+++||||+++||.+||+.|||.+|+
T Consensus 2 ~~~~d~~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~~l~F~~~i 81 (93)
T 1n1j_A 2 FREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYV 81 (93)
T ss_dssp -----CCCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTTCGGGH
T ss_pred CCcccccCChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcHhhH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 044287 110 GPIRRYLHKYRE 121 (188)
Q Consensus 110 ~~lk~~L~~~re 121 (188)
++++.+|++||+
T Consensus 82 ~~~~~~l~~~r~ 93 (93)
T 1n1j_A 82 EPLKLYLQKFRE 93 (93)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC
Confidence 999999999984
No 4
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=99.84 E-value=1.6e-21 Score=140.04 Aligned_cols=68 Identities=15% Similarity=0.260 Sum_probs=64.8
Q ss_pred ccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccCHHHHhhhc
Q 044287 35 RLLPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDICWALGTL 103 (188)
Q Consensus 35 ~~LPkA~I~RImK~~LP~~~rISkDA~~al~eca~eFI~~LtseAne~a~~~kRKTIt~eDVl~AL~~L 103 (188)
..||+|+|.||||+++| +++||+||+++|++|+++||++|+++|+++|.+++||||+++||.+|++.+
T Consensus 3 ~~LP~A~V~rI~K~~~p-~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~l 70 (76)
T 3b0c_W 3 RTVPRGTLRKIIKKHKP-HLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKVI 70 (76)
T ss_dssp -CCCHHHHHHHHHHHCT-TCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred CcccccHHHHHHHHhCC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 47999999999999998 799999999999999999999999999999999999999999999999764
No 5
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.82 E-value=1.3e-20 Score=152.34 Aligned_cols=75 Identities=20% Similarity=0.293 Sum_probs=71.8
Q ss_pred ccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccCHHHHhhhcCCCcchH
Q 044287 35 RLLPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDICWALGTLGFDDYAG 110 (188)
Q Consensus 35 ~~LPkA~I~RImK~~LP~~~rISkDA~~al~eca~eFI~~LtseAne~a~~~kRKTIt~eDVl~AL~~LGF~dyi~ 110 (188)
..||+++|.||||++||. .|||+||+++|++|+++|+.+|+++|+++|.++|||||+++||++||..|||++|++
T Consensus 3 ~~LP~a~V~Riik~~lg~-~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~lg~~~v~d 77 (154)
T 1f1e_A 3 VELPKAAIERIFRQGIGE-RRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLMVEGVED 77 (154)
T ss_dssp -CCCHHHHHHHHHTTSTT-CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHHTCTTSTT
T ss_pred ccCCccHHHHHHHhcCCc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcccccCCc
Confidence 369999999999999985 999999999999999999999999999999999999999999999999999999865
No 6
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=99.76 E-value=1.1e-18 Score=134.05 Aligned_cols=90 Identities=16% Similarity=0.286 Sum_probs=80.0
Q ss_pred ccccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccCHHHHhhhcCCCcchHHH
Q 044287 33 QERLLPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDICWALGTLGFDDYAGPI 112 (188)
Q Consensus 33 ~d~~LPkA~I~RImK~~LP~~~rISkDA~~al~eca~eFI~~LtseAne~a~~~kRKTIt~eDVl~AL~~LGF~dyi~~l 112 (188)
+|..||+++|.||||... ..+||+++.++|.+|+.+|+..|+.+|..+|+|+|||||+++||+.||+.+|+..|..++
T Consensus 4 ~d~~lP~a~I~Ri~r~~g--~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~~~~~~~l 81 (111)
T 3b0c_T 4 REPEIASSLIKQIFSHYV--KTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLVTDKMPL 81 (111)
T ss_dssp ------CHHHHHHHHHHH--CSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTSSBTTBCH
T ss_pred CCCCCCHHHHHHHHHHCC--CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCCccccccH
Confidence 678999999999999995 799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH--HHHHH
Q 044287 113 RRYLHKY--RELEG 124 (188)
Q Consensus 113 k~~L~~~--re~~~ 124 (188)
..+++.| +|..+
T Consensus 82 ~~l~~~~lp~E~~~ 95 (111)
T 3b0c_T 82 HVLVERHLPLEYRK 95 (111)
T ss_dssp HHHHHHHSCHHHHH
T ss_pred HHHHHHhCcHHHHH
Confidence 9999999 55333
No 7
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=99.76 E-value=8.7e-19 Score=122.53 Aligned_cols=66 Identities=32% Similarity=0.467 Sum_probs=63.8
Q ss_pred cCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccCHHHHhhhc
Q 044287 36 LLPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDICWALGTL 103 (188)
Q Consensus 36 ~LPkA~I~RImK~~LP~~~rISkDA~~al~eca~eFI~~LtseAne~a~~~kRKTIt~eDVl~AL~~L 103 (188)
.||+++|.||||+. ++.+||+||+.+|++|+++||.+|+.+|+.+|.+++||||+++||..|++.|
T Consensus 2 ~lP~a~v~Ri~k~~--~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~l 67 (68)
T 1b67_A 2 ELPIAPIGRIIKNA--GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKMF 67 (68)
T ss_dssp CSCHHHHHHHHHHT--TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGGG
T ss_pred CCCccHHHHHHhcC--CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 59999999999999 4799999999999999999999999999999999999999999999999886
No 8
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.69 E-value=3.8e-17 Score=132.09 Aligned_cols=75 Identities=24% Similarity=0.285 Sum_probs=70.4
Q ss_pred CCCCCccccccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccCHHHHhhh
Q 044287 26 DDGGIKEQERLLPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDICWALGT 102 (188)
Q Consensus 26 ~~~~~~~~d~~LPkA~I~RImK~~LP~~~rISkDA~~al~eca~eFI~~LtseAne~a~~~kRKTIt~eDVl~AL~~ 102 (188)
.+++.+.+++.||+++|.||||+. +..|||.||+++|++|+++|+.+|+++|+++|.+++||||+++||.+||+.
T Consensus 72 ~~~v~d~~~l~lP~a~V~Ri~k~~--g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~ 146 (154)
T 1f1e_A 72 VEGVEDYDGELFGRATVRRILKRA--GIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITY 146 (154)
T ss_dssp CTTSTTCCSCCCCHHHHHHHHHHT--TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred cccCCccccccCCccHHHHHHHHc--CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 456677789999999999999999 378999999999999999999999999999999999999999999999985
No 9
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=99.68 E-value=1.2e-17 Score=133.08 Aligned_cols=95 Identities=19% Similarity=0.284 Sum_probs=62.8
Q ss_pred ccccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCccCccCHHHHhhh---cCCCcc
Q 044287 33 QERLLPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKC-RKERRKTVNGDDICWALGT---LGFDDY 108 (188)
Q Consensus 33 ~d~~LPkA~I~RImK~~LP~~~rISkDA~~al~eca~eFI~~LtseAne~a-~~~kRKTIt~eDVl~AL~~---LGF~dy 108 (188)
..+.||.+.|.||||.. |+..+||++|..+|++|++.||.+|+..|+.+| ...+||||++.||.+|+.. |+|..+
T Consensus 16 ~~~~LPlaRIKrIMK~d-pdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~e~~dFL~d 94 (140)
T 2byk_A 16 AETFLPLSRVRTIMKSS-MDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNKNLEFLLQ 94 (140)
T ss_dssp -------------CCSS-SSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTCSTTGGGTT
T ss_pred cCCCCCHHHHHHHHhcC-cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcCchhhhHhc
Confidence 45789999999999997 778899999999999999999999999999999 9999999999999999985 566666
Q ss_pred hHHHHHHHHHHHHHHHhhhh
Q 044287 109 AGPIRRYLHKYRELEGERAN 128 (188)
Q Consensus 109 i~~lk~~L~~~re~~~~K~~ 128 (188)
+-|.+.++..|+++.+.+++
T Consensus 95 ivP~ki~l~~~~~~~~~~~~ 114 (140)
T 2byk_A 95 IVPQKIRVHQFQEMLRLNRS 114 (140)
T ss_dssp TSCSCC--------------
T ss_pred cccchhhHHHHHHHHHhccc
Confidence 66999999999998776543
No 10
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=99.67 E-value=7.5e-17 Score=122.12 Aligned_cols=86 Identities=19% Similarity=0.261 Sum_probs=72.2
Q ss_pred CCCCCCCCCCccccccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccCHHHHh
Q 044287 21 AGASSDDGGIKEQERLLPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDICWAL 100 (188)
Q Consensus 21 ~~~~~~~~~~~~~d~~LPkA~I~RImK~~LP~~~rISkDA~~al~eca~eFI~~LtseAne~a~~~kRKTIt~eDVl~AL 100 (188)
.++-.+...++.....||+++|.||++... ..+||.|+.++|++|+++|+..|+.+|..+|++++||||+++||.+||
T Consensus 13 ~g~kr~~k~~r~~i~~ip~~~I~Rlar~~G--v~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~AL 90 (102)
T 1id3_B 13 GGAKRHRKILRDNIQGITKPAIRRLARRGG--VKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYAL 90 (102)
T ss_dssp -----------CCGGGSCHHHHHHHHHHTT--CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHH
T ss_pred CccchHHHHHHhccCCCCHHHHHHHHHHcC--chhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHH
Confidence 455677778888899999999999999986 589999999999999999999999999999999999999999999999
Q ss_pred hhcCCCcc
Q 044287 101 GTLGFDDY 108 (188)
Q Consensus 101 ~~LGF~dy 108 (188)
+.+||.-|
T Consensus 91 kr~g~~lY 98 (102)
T 1id3_B 91 KRQGRTLY 98 (102)
T ss_dssp HHTTCCEE
T ss_pred HHcCCCCC
Confidence 99999866
No 11
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=99.66 E-value=9.4e-17 Score=117.33 Aligned_cols=78 Identities=19% Similarity=0.244 Sum_probs=72.6
Q ss_pred CCccccccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccCHHHHhhhcCCCcc
Q 044287 29 GIKEQERLLPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDICWALGTLGFDDY 108 (188)
Q Consensus 29 ~~~~~d~~LPkA~I~RImK~~LP~~~rISkDA~~al~eca~eFI~~LtseAne~a~~~kRKTIt~eDVl~AL~~LGF~dy 108 (188)
.++.....||+++|.||++..+ ..+||.|+.++|.+|+++|+..|+.+|..+|++++||||+++||.+||+.+||.-|
T Consensus 3 ~~r~~~~~ip~~~I~Riar~~G--v~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~g~~lY 80 (84)
T 2hue_C 3 VLRDNIQGITKPAIRRLARRGG--VKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 80 (84)
T ss_dssp CGGGGCCSSCHHHHHHHHHHTT--CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTTCEEEE
T ss_pred cccccCCCCCHHHHHHHHHHcC--chhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCC
Confidence 4556677899999999999986 58999999999999999999999999999999999999999999999999998766
No 12
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=99.59 E-value=1.5e-15 Score=117.51 Aligned_cols=76 Identities=28% Similarity=0.349 Sum_probs=69.1
Q ss_pred ccccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccCHHHHhhhcCCCcch
Q 044287 33 QERLLPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDICWALGTLGFDDYA 109 (188)
Q Consensus 33 ~d~~LPkA~I~RImK~~LP~~~rISkDA~~al~eca~eFI~~LtseAne~a~~~kRKTIt~eDVl~AL~~LGF~dyi 109 (188)
....||.|.|.||||.. |+..+||+||..+|.+|++.||.+|+..|+..|...+||||+++||..|++..+..+|+
T Consensus 38 k~~~lPvaRIkrImK~d-~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~~e~~dFL 113 (119)
T 4g92_C 38 KIHQLPLARIKKVMKAD-PEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALSKSDMFDFL 113 (119)
T ss_dssp SCCSSCHHHHHHHHHTS-TTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGG
T ss_pred ccCCCCHHHHHHHHhhC-CccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHhcCchhhHH
Confidence 35679999999999975 78889999999999999999999999999999999999999999999999876654554
No 13
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=99.59 E-value=2e-15 Score=114.01 Aligned_cols=84 Identities=19% Similarity=0.234 Sum_probs=74.5
Q ss_pred CCCCCCCCccccccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccCHHHHhhh
Q 044287 23 ASSDDGGIKEQERLLPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDICWALGT 102 (188)
Q Consensus 23 ~~~~~~~~~~~d~~LPkA~I~RImK~~LP~~~rISkDA~~al~eca~eFI~~LtseAne~a~~~kRKTIt~eDVl~AL~~ 102 (188)
+..+...++.....||+++|.||++.... .+||.+|.+.|.+|++.|+..|+.+|..+|++++||||+++||.+||+.
T Consensus 16 ~kr~~k~~r~~~~gip~~~I~Rlar~~G~--~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~ 93 (103)
T 1tzy_D 16 AKRHRKVLRDNIQGITKPAIRRLARRGGV--KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKR 93 (103)
T ss_dssp -----CCCCCGGGGSCHHHHHHHHHHTTC--CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred ccccccchhhhcccCCHHHHHHHHHHcCc--cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHH
Confidence 33556667888889999999999999873 7999999999999999999999999999999999999999999999999
Q ss_pred cCCCcc
Q 044287 103 LGFDDY 108 (188)
Q Consensus 103 LGF~dy 108 (188)
+||+.|
T Consensus 94 ~g~~lY 99 (103)
T 1tzy_D 94 QGRTLY 99 (103)
T ss_dssp TTCEEE
T ss_pred cCCCCc
Confidence 998765
No 14
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.58 E-value=2.6e-15 Score=112.19 Aligned_cols=77 Identities=26% Similarity=0.298 Sum_probs=69.1
Q ss_pred ccccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccCHHHHhhhcCCCcchH
Q 044287 33 QERLLPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDICWALGTLGFDDYAG 110 (188)
Q Consensus 33 ~d~~LPkA~I~RImK~~LP~~~rISkDA~~al~eca~eFI~~LtseAne~a~~~kRKTIt~eDVl~AL~~LGF~dyi~ 110 (188)
....||.|.|.||||.. |+..+||+||..+|.+|++.||.+|+..|+..|.+.+||||+++||..|++..++.+|+.
T Consensus 16 ~~~~lP~arIkrImK~~-~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~~e~~~FL~ 92 (97)
T 1n1j_B 16 RVQELPLARIKKIMKLD-EDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLI 92 (97)
T ss_dssp ----CCHHHHHHHHTTS-TTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGGT
T ss_pred CCCcCCHHHHHHHHccC-ccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhcCcHHHHHH
Confidence 45689999999999998 666799999999999999999999999999999999999999999999999988887764
No 15
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=99.57 E-value=2.1e-15 Score=114.01 Aligned_cols=85 Identities=20% Similarity=0.271 Sum_probs=64.4
Q ss_pred CCCCCCCCCccccccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccCHHHHhh
Q 044287 22 GASSDDGGIKEQERLLPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDICWALG 101 (188)
Q Consensus 22 ~~~~~~~~~~~~d~~LPkA~I~RImK~~LP~~~rISkDA~~al~eca~eFI~~LtseAne~a~~~kRKTIt~eDVl~AL~ 101 (188)
++..+...++.....||+++|.||++.... .+||.+|.+.|.++++.|+..|+.+|..+|++++||||+++||.+||+
T Consensus 15 ~~kr~~~~~r~~~~gip~~~I~Rlar~~G~--~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr 92 (103)
T 2yfw_B 15 GAKRHRKILRDNIQGITKPAIRRLARRGGV--KRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALK 92 (103)
T ss_dssp ---------------CCHHHHHHHHHHTTC--CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CccchhhhhhhhhccCCHHHHHHHHHHcCc--cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHH
Confidence 344556667788888999999999999873 799999999999999999999999999999999999999999999999
Q ss_pred hcCCCcc
Q 044287 102 TLGFDDY 108 (188)
Q Consensus 102 ~LGF~dy 108 (188)
.+||..|
T Consensus 93 ~~g~~lY 99 (103)
T 2yfw_B 93 RQGRTLY 99 (103)
T ss_dssp HHC----
T ss_pred HcCCCCc
Confidence 9998765
No 16
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=99.57 E-value=4.5e-15 Score=104.51 Aligned_cols=64 Identities=33% Similarity=0.450 Sum_probs=61.7
Q ss_pred cCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccCHHHHhh
Q 044287 36 LLPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDICWALG 101 (188)
Q Consensus 36 ~LPkA~I~RImK~~LP~~~rISkDA~~al~eca~eFI~~LtseAne~a~~~kRKTIt~eDVl~AL~ 101 (188)
.||+++|.||+|+.. ..+||++|..+|++|+..|+..|+..|+.+|.++|||||+++||..|++
T Consensus 6 ~lp~a~v~Rl~r~~g--~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 6 ELPIAPVDRLIRKAG--AERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69 (70)
T ss_dssp CSCHHHHHHHHHHTT--CSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred cCChHHHHHHHHHcC--cceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 699999999999974 7899999999999999999999999999999999999999999999986
No 17
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.27 E-value=4.2e-12 Score=95.09 Aligned_cols=76 Identities=13% Similarity=0.164 Sum_probs=59.7
Q ss_pred cccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccCHHHHhhhcCCCcchH
Q 044287 34 ERLLPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDICWALGTLGFDDYAG 110 (188)
Q Consensus 34 d~~LPkA~I~RImK~~LP~~~rISkDA~~al~eca~eFI~~LtseAne~a~~~kRKTIt~eDVl~AL~~LGF~dyi~ 110 (188)
...||.+.|.||||.. |+..+||.+|..+|.++++.|+.+|+..|+..|.+.+||||+++||..|++.-+..+|+.
T Consensus 9 ~~~fPvaRIkrimK~~-~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~~e~l~FL~ 84 (98)
T 1jfi_A 9 NARFPPARIKKIMQTD-EEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEGDPAANK 84 (98)
T ss_dssp -CCCCHHHHHHHHTTS-TTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC---------
T ss_pred CCCCChHHHHHHHHcC-ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhcCchhhHHH
Confidence 4689999999999974 556799999999999999999999999999999999999999999999999766555554
No 18
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=99.09 E-value=1.6e-10 Score=83.84 Aligned_cols=71 Identities=17% Similarity=0.225 Sum_probs=65.0
Q ss_pred cccCchhHHHHHHhhhCC---CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccCHHHHhhhcC
Q 044287 34 ERLLPIANVGRIMKQILP---ANAKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDICWALGTLG 104 (188)
Q Consensus 34 d~~LPkA~I~RImK~~LP---~~~rISkDA~~al~eca~eFI~~LtseAne~a~~~kRKTIt~eDVl~AL~~LG 104 (188)
++.||++++.||+|++.. .+.|++.+|..+||++++.|+.-|...||..|.|.||+||.++||--|.+--|
T Consensus 1 ~lli~k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~rirg 74 (77)
T 2hue_B 1 MALIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRG 74 (77)
T ss_dssp -CCSCHHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTT
T ss_pred CCccccchHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHHhC
Confidence 468999999999999943 47899999999999999999999999999999999999999999999987655
No 19
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=98.97 E-value=6.6e-10 Score=84.09 Aligned_cols=72 Identities=14% Similarity=0.168 Sum_probs=60.6
Q ss_pred CccccccCchhHHHHHHhhhCCC------CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccCHHHHhh
Q 044287 30 IKEQERLLPIANVGRIMKQILPA------NAKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDICWALG 101 (188)
Q Consensus 30 ~~~~d~~LPkA~I~RImK~~LP~------~~rISkDA~~al~eca~eFI~~LtseAne~a~~~kRKTIt~eDVl~AL~ 101 (188)
.+..++.||++++.||++++..+ +.+++.+|..+||++++.|+.-|...||..|.+.||+||.+.||--|.+
T Consensus 21 Qkst~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r 98 (100)
T 2yfv_A 21 QRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARR 98 (100)
T ss_dssp -------CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred cccchhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHH
Confidence 34578999999999999999842 6899999999999999999999999999999999999999999988764
No 20
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=98.95 E-value=9.7e-10 Score=80.55 Aligned_cols=70 Identities=19% Similarity=0.173 Sum_probs=64.3
Q ss_pred ccCchhHHHHHHhhhCC-----CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccCHHHHhhhcC
Q 044287 35 RLLPIANVGRIMKQILP-----ANAKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDICWALGTLG 104 (188)
Q Consensus 35 ~~LPkA~I~RImK~~LP-----~~~rISkDA~~al~eca~eFI~~LtseAne~a~~~kRKTIt~eDVl~AL~~LG 104 (188)
+.||++++.||+|++.. .+.|++.+|..+||++++.|+.-|...||..|.|.||+||.++||--|..--|
T Consensus 2 lLI~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~rirg 76 (82)
T 3nqj_A 2 LLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRG 76 (82)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred CCcccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHcc
Confidence 46999999999999983 26899999999999999999999999999999999999999999998886544
No 21
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=98.88 E-value=1.8e-09 Score=86.14 Aligned_cols=75 Identities=19% Similarity=0.187 Sum_probs=66.5
Q ss_pred ccccccCchhHHHHHHhhhCC-----CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccCHHHHhhhcCC
Q 044287 31 KEQERLLPIANVGRIMKQILP-----ANAKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDICWALGTLGF 105 (188)
Q Consensus 31 ~~~d~~LPkA~I~RImK~~LP-----~~~rISkDA~~al~eca~eFI~~LtseAne~a~~~kRKTIt~eDVl~AL~~LGF 105 (188)
+..++.||++.+.||++++.. .+.+++.+|+.+||++++.|+..|...||..|.|.+|+||.++||--|+.--|.
T Consensus 56 kst~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArrirg~ 135 (140)
T 3nqu_A 56 KSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGL 135 (140)
T ss_dssp ---CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC-
T ss_pred cccccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHhccc
Confidence 568899999999999999983 268999999999999999999999999999999999999999999999876554
No 22
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=98.88 E-value=2e-09 Score=87.19 Aligned_cols=73 Identities=18% Similarity=0.151 Sum_probs=65.0
Q ss_pred ccccccCchhHHHHHHhhhCCC-----CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccCHHHHhhhc
Q 044287 31 KEQERLLPIANVGRIMKQILPA-----NAKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDICWALGTL 103 (188)
Q Consensus 31 ~~~d~~LPkA~I~RImK~~LP~-----~~rISkDA~~al~eca~eFI~~LtseAne~a~~~kRKTIt~eDVl~AL~~L 103 (188)
+..++.||++.+.|||+++..+ +.+++.+|+.+||++++.|+.-|...||..|.+.+|+||.++||--|+.--
T Consensus 72 kSteLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArrIr 149 (156)
T 3r45_A 72 KSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIR 149 (156)
T ss_dssp ---CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHHH
T ss_pred cccccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHHc
Confidence 5688999999999999999842 679999999999999999999999999999999999999999999887643
No 23
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=98.88 E-value=2.3e-09 Score=85.11 Aligned_cols=74 Identities=19% Similarity=0.236 Sum_probs=67.6
Q ss_pred ccccccCchhHHHHHHhhhCC---CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccCHHHHhhhcC
Q 044287 31 KEQERLLPIANVGRIMKQILP---ANAKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDICWALGTLG 104 (188)
Q Consensus 31 ~~~d~~LPkA~I~RImK~~LP---~~~rISkDA~~al~eca~eFI~~LtseAne~a~~~kRKTIt~eDVl~AL~~LG 104 (188)
+..++.||++.+.||++++.. .+.+++.+|..+||++++.|+..|...||..|.+.+|+||.+.||--|..--|
T Consensus 57 kst~lLIpk~PF~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~rirg 133 (136)
T 1tzy_C 57 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133 (136)
T ss_dssp HCCSCCSCHHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHT
T ss_pred cchhhhhccchHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHHHhC
Confidence 457889999999999999943 47999999999999999999999999999999999999999999999887554
No 24
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.83 E-value=1e-08 Score=73.04 Aligned_cols=65 Identities=20% Similarity=0.211 Sum_probs=61.7
Q ss_pred ccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccCHHHHhh
Q 044287 35 RLLPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDICWALG 101 (188)
Q Consensus 35 ~~LPkA~I~RImK~~LP~~~rISkDA~~al~eca~eFI~~LtseAne~a~~~kRKTIt~eDVl~AL~ 101 (188)
..||.++|.+|++..+ -.++|.||...|.+-++..+..|+.+|...++|.||||++++||-.||+
T Consensus 5 s~lp~~~v~~iaes~G--i~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 5 SSISAESMKVIAESIG--VGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp CCCCHHHHHHHHHHTT--CCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 3699999999999997 4599999999999999999999999999999999999999999999985
No 25
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=98.65 E-value=6.1e-08 Score=74.83 Aligned_cols=76 Identities=16% Similarity=0.227 Sum_probs=66.7
Q ss_pred HHHHHHhhhCC-CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccCHHHHhhhcCCCcchHHHHHHHHHH
Q 044287 41 NVGRIMKQILP-ANAKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDICWALGTLGFDDYAGPIRRYLHKY 119 (188)
Q Consensus 41 ~I~RImK~~LP-~~~rISkDA~~al~eca~eFI~~LtseAne~a~~~kRKTIt~eDVl~AL~~LGF~dyi~~lk~~L~~~ 119 (188)
+|.||+++.+. .++.||.++..+|.+.+..|+..|+..+...|.++|||||+++||.-+++.. +.|..+|..|
T Consensus 32 ~V~rIvke~gaer~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr~------~~L~~~l~~~ 105 (113)
T 4dra_A 32 TVGCLCEEVALDKEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRS------NSLLKYITDK 105 (113)
T ss_dssp HHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTC------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhC------HHHHHHHHHH
Confidence 68999999874 2567999999999999999999999999999999999999999999999984 5666676666
Q ss_pred HHH
Q 044287 120 REL 122 (188)
Q Consensus 120 re~ 122 (188)
.+.
T Consensus 106 ~~e 108 (113)
T 4dra_A 106 SEE 108 (113)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 26
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=98.60 E-value=9.1e-08 Score=71.09 Aligned_cols=62 Identities=19% Similarity=0.204 Sum_probs=58.5
Q ss_pred HHHHHHhhhCCCC-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccCHHHHhhh
Q 044287 41 NVGRIMKQILPAN-AKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDICWALGT 102 (188)
Q Consensus 41 ~I~RImK~~LP~~-~rISkDA~~al~eca~eFI~~LtseAne~a~~~kRKTIt~eDVl~AL~~ 102 (188)
+|.+|+.+.++.. +.||.++..+|.+.+..|+..|+..+...|.|+|||||+++||.-+++.
T Consensus 17 ~V~ki~~e~~~~~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rr 79 (90)
T 3v9r_A 17 RVEERLQQVLSSEDIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRK 79 (90)
T ss_dssp HHHHHHHHHSCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHHHhcCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 6889999998754 8899999999999999999999999999999999999999999999886
No 27
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=98.60 E-value=1.1e-07 Score=72.56 Aligned_cols=76 Identities=12% Similarity=0.198 Sum_probs=65.2
Q ss_pred HHHHHHhhhCC-CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccCHHHHhhhcCCCcchHHHHHHHHHH
Q 044287 41 NVGRIMKQILP-ANAKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDICWALGTLGFDDYAGPIRRYLHKY 119 (188)
Q Consensus 41 ~I~RImK~~LP-~~~rISkDA~~al~eca~eFI~~LtseAne~a~~~kRKTIt~eDVl~AL~~LGF~dyi~~lk~~L~~~ 119 (188)
+|.||+++.+- .+.++|.++..+|.+.+..|+..|+..|...|.|+|||||+.+||.-|++.. +.|...+..|
T Consensus 24 ~V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rrn------~~l~~~l~~~ 97 (107)
T 3b0b_B 24 TTGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARRS------NSLLKYITQK 97 (107)
T ss_dssp HHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTC------HHHHHHHHHH
T ss_pred HHHHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHhC------HHHHHHHHHH
Confidence 58999998863 2479999999999999999999999999999999999999999999999984 4555555555
Q ss_pred HHH
Q 044287 120 REL 122 (188)
Q Consensus 120 re~ 122 (188)
.+.
T Consensus 98 ~~e 100 (107)
T 3b0b_B 98 SDE 100 (107)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 28
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=98.59 E-value=6.2e-08 Score=77.22 Aligned_cols=77 Identities=12% Similarity=0.193 Sum_probs=65.6
Q ss_pred HHHHHHhhhCC-CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccCHHHHhhhcCCCcchHHHHHHHHHH
Q 044287 41 NVGRIMKQILP-ANAKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDICWALGTLGFDDYAGPIRRYLHKY 119 (188)
Q Consensus 41 ~I~RImK~~LP-~~~rISkDA~~al~eca~eFI~~LtseAne~a~~~kRKTIt~eDVl~AL~~LGF~dyi~~lk~~L~~~ 119 (188)
+|.||+++... .++.||.++..+|.+.+..|+..|+..+...|.|+|||||+++||.-+++.. +.|..+|..|
T Consensus 24 ~VgkIvee~~~~~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rrn------~~L~~~L~~~ 97 (140)
T 3vh5_A 24 TTGALAQDVAEDKGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARRS------NSLLKYITQK 97 (140)
T ss_dssp HHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTS------HHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhC------HHHHHHHHHH
Confidence 67889988754 3688999999999999999999999999999999999999999999999984 4555555555
Q ss_pred HHHH
Q 044287 120 RELE 123 (188)
Q Consensus 120 re~~ 123 (188)
.+..
T Consensus 98 ~~el 101 (140)
T 3vh5_A 98 SDEL 101 (140)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 29
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.53 E-value=2.2e-07 Score=65.78 Aligned_cols=60 Identities=18% Similarity=0.248 Sum_probs=56.7
Q ss_pred HHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccCHHHHhhh
Q 044287 41 NVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDICWALGT 102 (188)
Q Consensus 41 ~I~RImK~~LP~~~rISkDA~~al~eca~eFI~~LtseAne~a~~~kRKTIt~eDVl~AL~~ 102 (188)
.|.||+|+.+ .-+++.++...|.+.+..|+.-|+.+|..+|.|.|||||+++||.-|++.
T Consensus 6 ~i~~iLk~~G--~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~ 65 (68)
T 1taf_A 6 VIMSILKELN--VQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEV 65 (68)
T ss_dssp HHHHHHHHTT--CCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHCC--CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 6899999987 56999999999999999999999999999999999999999999999874
No 30
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=98.48 E-value=1.5e-07 Score=73.33 Aligned_cols=55 Identities=22% Similarity=0.305 Sum_probs=48.7
Q ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccCHHHHhhhcCCCc
Q 044287 53 NAKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDICWALGTLGFDD 107 (188)
Q Consensus 53 ~~rISkDA~~al~eca~eFI~~LtseAne~a~~~kRKTIt~eDVl~AL~~LGF~d 107 (188)
..|||.++.+.+.+...+|+..|...|..+|++.+||||+++||..||+..|-.-
T Consensus 62 vkRIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr~G~~l 116 (121)
T 2ly8_A 62 SKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTL 116 (121)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTTCGG
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhCCCcC
Confidence 3478888888888888999999999999999999999999999999999987543
No 31
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=98.37 E-value=6.4e-07 Score=70.17 Aligned_cols=70 Identities=10% Similarity=0.140 Sum_probs=64.3
Q ss_pred ccccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccCHHHHhhh
Q 044287 33 QERLLPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDICWALGT 102 (188)
Q Consensus 33 ~d~~LPkA~I~RImK~~LP~~~rISkDA~~al~eca~eFI~~LtseAne~a~~~kRKTIt~eDVl~AL~~ 102 (188)
..+.||.+.|.|+||+......||+.+|...|..+.+-|+..|...|...|.+.+|++|+++||..|+..
T Consensus 24 agLqfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~n 93 (128)
T 1f66_C 24 AGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 93 (128)
T ss_dssp HTCSSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHH
T ss_pred CCccCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 5688999999999999864345999999999999999999999999999999999999999999999873
No 32
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=98.34 E-value=9.7e-07 Score=68.65 Aligned_cols=69 Identities=9% Similarity=0.170 Sum_probs=63.6
Q ss_pred ccccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccCHHHHhhh
Q 044287 33 QERLLPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDICWALGT 102 (188)
Q Consensus 33 ~d~~LPkA~I~RImK~~LP~~~rISkDA~~al~eca~eFI~~LtseAne~a~~~kRKTIt~eDVl~AL~~ 102 (188)
..+.||.+.|.|+||+.-. ..||+.+|...|..+.+.|+..|...|...|.+.+|++|+++||..|++.
T Consensus 20 agL~fPV~ri~R~Lk~~~~-a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n 88 (123)
T 2nqb_C 20 AGLQFPVGRIHRLLRKGNY-AERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 88 (123)
T ss_dssp HTCSSCHHHHHHHHHHTTS-CSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred CCeeccHHHHHHHHHcccc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHhc
Confidence 4678999999999999743 45999999999999999999999999999999999999999999999873
No 33
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=98.33 E-value=2.5e-07 Score=79.16 Aligned_cols=61 Identities=20% Similarity=0.202 Sum_probs=55.4
Q ss_pred HHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccCHHHHhhhcC
Q 044287 42 VGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDICWALGTLG 104 (188)
Q Consensus 42 I~RImK~~LP~~~rISkDA~~al~eca~eFI~~LtseAne~a~~~kRKTIt~eDVl~AL~~LG 104 (188)
+.||++... ..|||.++.+.+......|+.-|+..|..+|++++||||+++||..||+.+|
T Consensus 167 ~~RlaRrgG--VkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~g 227 (235)
T 2l5a_A 167 DEEDGDKGG--VKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQG 227 (235)
T ss_dssp CCTTSCCTT--CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHH
T ss_pred HHHHhhcCC--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhcC
Confidence 346777765 6799999999999999999999999999999999999999999999999754
No 34
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=98.31 E-value=1.2e-06 Score=68.58 Aligned_cols=69 Identities=12% Similarity=0.177 Sum_probs=63.7
Q ss_pred ccccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccCHHHHhhh
Q 044287 33 QERLLPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDICWALGT 102 (188)
Q Consensus 33 ~d~~LPkA~I~RImK~~LP~~~rISkDA~~al~eca~eFI~~LtseAne~a~~~kRKTIt~eDVl~AL~~ 102 (188)
..+.||.+.|.|+||+.-. ..||+.+|...|..+.+.|+..|...|...|.+.+|++|+++||..|+..
T Consensus 22 agLqfPV~rI~R~Lk~~~~-a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n 90 (129)
T 1tzy_A 22 AGLQFPVGRVHRLLRKGNY-AERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN 90 (129)
T ss_dssp HTCSSCHHHHHHHHHHTTS-SSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred CceeccHHHHHHHHHcccc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 5688999999999999743 45999999999999999999999999999999999999999999999873
No 35
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=98.28 E-value=1.5e-06 Score=67.26 Aligned_cols=69 Identities=19% Similarity=0.235 Sum_probs=63.9
Q ss_pred ccccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccCHHHHhhh
Q 044287 33 QERLLPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDICWALGT 102 (188)
Q Consensus 33 ~d~~LPkA~I~RImK~~LP~~~rISkDA~~al~eca~eFI~~LtseAne~a~~~kRKTIt~eDVl~AL~~ 102 (188)
..+.||.+.|.|+||+.-. ..||+.+|...|..+.+.|+..|...|...|.+.+|++|+++||..|++.
T Consensus 19 agLqfPV~ri~R~Lk~~~~-a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~n 87 (120)
T 2f8n_G 19 AGVIFPVGRMLRYIKKGHP-KYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVAN 87 (120)
T ss_dssp HTCSSCHHHHHHHHHHHSS-SCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred cCccCChHHHHHHHHcCcc-ccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 5678999999999999853 45999999999999999999999999999999999999999999999873
No 36
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=98.28 E-value=1.2e-06 Score=68.85 Aligned_cols=69 Identities=13% Similarity=0.185 Sum_probs=63.7
Q ss_pred ccccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccCHHHHhhh
Q 044287 33 QERLLPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDICWALGT 102 (188)
Q Consensus 33 ~d~~LPkA~I~RImK~~LP~~~rISkDA~~al~eca~eFI~~LtseAne~a~~~kRKTIt~eDVl~AL~~ 102 (188)
..+.||.+.|.|+||+.-. ..||+.+|...|..+.+-|+..|...|...|.+.+|++|+++||..|++.
T Consensus 22 agLqfPV~rI~R~Lk~~~~-a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~n 90 (131)
T 1id3_C 22 AGLTFPVGRVHRLLRRGNY-AQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRN 90 (131)
T ss_dssp GTCSSCHHHHHHHHHTTCS-CSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred CCeecCHHHHHHHHHcccc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 5689999999999999743 45999999999999999999999999999999999999999999999873
No 37
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=98.19 E-value=2.6e-06 Score=68.40 Aligned_cols=69 Identities=12% Similarity=0.183 Sum_probs=63.7
Q ss_pred ccccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccCHHHHhhh
Q 044287 33 QERLLPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDICWALGT 102 (188)
Q Consensus 33 ~d~~LPkA~I~RImK~~LP~~~rISkDA~~al~eca~eFI~~LtseAne~a~~~kRKTIt~eDVl~AL~~ 102 (188)
..+.||.+.|.|+||+.-. ..||+.+|...|..+.+.|+..|...|...|...+|++|+++||..|++.
T Consensus 41 agLqFPVgrI~R~LK~~~~-a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~n 109 (149)
T 2f8n_K 41 AGLQFPVGRVHRLLRKGNY-SERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN 109 (149)
T ss_dssp HTCSSCHHHHHHHHHHTTS-CSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred CCeeccHHHHHHHHHcccc-ccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHhc
Confidence 5678999999999999743 45999999999999999999999999999999999999999999999873
No 38
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=98.16 E-value=1.3e-05 Score=68.58 Aligned_cols=107 Identities=11% Similarity=0.079 Sum_probs=78.8
Q ss_pred cccCchhHHHHHHhhhCCC------CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccCHHHHhhhcCCCc
Q 044287 34 ERLLPIANVGRIMKQILPA------NAKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDICWALGTLGFDD 107 (188)
Q Consensus 34 d~~LPkA~I~RImK~~LP~------~~rISkDA~~al~eca~eFI~~LtseAne~a~~~kRKTIt~eDVl~AL~~LGF~d 107 (188)
.+.+|+.+..|+++++..+ +.+++..|..+||++++.|+.-|...+|-.|.+.+|.||.+.|+.-|..--|-..
T Consensus 9 ~~lI~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarrirg~~~ 88 (235)
T 2l5a_A 9 KLLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRGQFL 88 (235)
T ss_dssp --CCSCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHTSSCSCC
T ss_pred cccccCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHHHhhccC
Confidence 4689999999999998753 6899999999999999999999999999999999999999999999988665321
Q ss_pred ----chHHHHHHHHHHHHHHHhhhhhhhccccCCcch
Q 044287 108 ----YAGPIRRYLHKYRELEGERANQQDKASNSNSNI 140 (188)
Q Consensus 108 ----yi~~lk~~L~~~re~~~~K~~~~~K~~~sg~~~ 140 (188)
-.+.-+.....++..-..=-.+..++.+.|+++
T Consensus 89 ~p~evme~~~~~~~~~k~~~~~i~~ky~~~~~~gd~i 125 (235)
T 2l5a_A 89 VPRGSMERHKLADENMRKVWSNIISKYESIEEQGDLV 125 (235)
T ss_dssp CCSSSCHHHHHHHHHHHHHHHHHHHHHTTCCCCSCCC
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcc
Confidence 111222222333332222223445677777765
No 39
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=98.13 E-value=4.3e-06 Score=65.36 Aligned_cols=63 Identities=27% Similarity=0.372 Sum_probs=59.6
Q ss_pred hHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccCHHHHhhhc
Q 044287 40 ANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDICWALGTL 103 (188)
Q Consensus 40 A~I~RImK~~LP~~~rISkDA~~al~eca~eFI~~LtseAne~a~~~kRKTIt~eDVl~AL~~L 103 (188)
..|+|++|++-| +..||.+|...|...+..+..-|+.+|...|...+|+||++.||..|++-|
T Consensus 37 ~YIyKVLKQVhp-d~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl 99 (123)
T 2nqb_D 37 IYIYTVLKQVHP-DTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLL 99 (123)
T ss_dssp HHHHHHHHHHCT-TCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHh
Confidence 579999999987 689999999999999999999999999999999999999999999999764
No 40
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=98.09 E-value=5.5e-06 Score=64.97 Aligned_cols=64 Identities=28% Similarity=0.364 Sum_probs=59.9
Q ss_pred hhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccCHHHHhhhc
Q 044287 39 IANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDICWALGTL 103 (188)
Q Consensus 39 kA~I~RImK~~LP~~~rISkDA~~al~eca~eFI~~LtseAne~a~~~kRKTIt~eDVl~AL~~L 103 (188)
...|+|++|++-| +..||.+|...|...+..+..-|+.+|...|...+|+||+..||..|++-|
T Consensus 39 ~~YIyKVLKQVhp-d~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl 102 (126)
T 1tzy_B 39 SIYVYKVLKQVHP-DTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLL 102 (126)
T ss_dssp HHHHHHHHHHHCT-TCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 3479999999987 689999999999999999999999999999999999999999999999765
No 41
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=98.08 E-value=5.7e-06 Score=68.22 Aligned_cols=70 Identities=10% Similarity=0.182 Sum_probs=63.6
Q ss_pred ccccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccCHHHHhhh
Q 044287 33 QERLLPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDICWALGT 102 (188)
Q Consensus 33 ~d~~LPkA~I~RImK~~LP~~~rISkDA~~al~eca~eFI~~LtseAne~a~~~kRKTIt~eDVl~AL~~ 102 (188)
..+.||.+.|.|+||+.-....||+.+|...|..+.+-++..|...|...|.+.+|++|+++||..|++.
T Consensus 102 agl~fPv~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~n 171 (192)
T 2jss_A 102 AGLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRG 171 (192)
T ss_dssp SSCCSCHHHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHT
T ss_pred CCCcCCHHHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhc
Confidence 3589999999999999743236999999999999999999999999999999999999999999999873
No 42
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=97.87 E-value=4.6e-05 Score=55.90 Aligned_cols=69 Identities=17% Similarity=0.167 Sum_probs=62.4
Q ss_pred cccCchhHHHHHHhhhCC-CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccCHHHHhhh
Q 044287 34 ERLLPIANVGRIMKQILP-ANAKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDICWALGT 102 (188)
Q Consensus 34 d~~LPkA~I~RImK~~LP-~~~rISkDA~~al~eca~eFI~~LtseAne~a~~~kRKTIt~eDVl~AL~~ 102 (188)
+..+|..+|.||++.... +..+||+||..++.+....||..-..-|...+..++-.+|..+|+.+.+-.
T Consensus 10 ~~~i~~~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEki~pQ 79 (84)
T 4dra_E 10 GSGFRKELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKVLPQ 79 (84)
T ss_dssp -CCCCHHHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 357999999999998886 578999999999999999999999999999999999999999999887654
No 43
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=97.78 E-value=4.6e-05 Score=62.81 Aligned_cols=63 Identities=21% Similarity=0.356 Sum_probs=59.3
Q ss_pred hHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccCHHHHhhhc
Q 044287 40 ANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDICWALGTL 103 (188)
Q Consensus 40 A~I~RImK~~LP~~~rISkDA~~al~eca~eFI~~LtseAne~a~~~kRKTIt~eDVl~AL~~L 103 (188)
.-|+|++|++-| +..||.+|...|...+..+..-|+.+|...+...+|+||+..||..|++-+
T Consensus 7 ~yi~kvLkqv~p-~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl~ 69 (192)
T 2jss_A 7 SYIYKVLKQTHP-DTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLI 69 (192)
T ss_dssp HHHHHHHHHHCS-SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHH
T ss_pred HHHHHHHcccCC-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHh
Confidence 469999999987 688999999999999999999999999999999999999999999999853
No 44
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=97.78 E-value=6.9e-05 Score=54.54 Aligned_cols=70 Identities=16% Similarity=0.212 Sum_probs=62.4
Q ss_pred ccccCchhHHHHHHhhhCC-CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccCHHHHhhh
Q 044287 33 QERLLPIANVGRIMKQILP-ANAKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDICWALGT 102 (188)
Q Consensus 33 ~d~~LPkA~I~RImK~~LP-~~~rISkDA~~al~eca~eFI~~LtseAne~a~~~kRKTIt~eDVl~AL~~ 102 (188)
.+..+|...|.||++.... +..||++||..++.+....||..-..-|...+..++-..|..+|+-+.+-.
T Consensus 5 ~~~~~~~~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEki~pq 75 (81)
T 3b0b_C 5 REGGFRKETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKVLPQ 75 (81)
T ss_dssp --CCCCHHHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHHHHHH
Confidence 4568999999999999987 578999999999999999999999999999999899999999999887654
No 45
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=97.67 E-value=0.00012 Score=53.96 Aligned_cols=67 Identities=19% Similarity=0.290 Sum_probs=60.8
Q ss_pred cCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CccCccCHHHHhhhcC
Q 044287 36 LLPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERR-KTVNGDDICWALGTLG 104 (188)
Q Consensus 36 ~LPkA~I~RImK~~LP~~~rISkDA~~al~eca~eFI~~LtseAne~a~~~kR-KTIt~eDVl~AL~~LG 104 (188)
.||++.|.|||...+ +..++.+...+|.-.+.+||..|..+|.+++.+.+. ..|.|.||-.|.+.|.
T Consensus 16 ~f~k~~vKrl~~~~~--~~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~rrl~ 83 (89)
T 1bh9_B 16 AFPKAAIKRLIQSIT--GTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRLK 83 (89)
T ss_dssp CCCHHHHHHHHHHHH--SSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHc--CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Confidence 699999999999998 679999999999999999999999999999997764 4799999999987653
No 46
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=97.63 E-value=0.00019 Score=51.64 Aligned_cols=66 Identities=17% Similarity=0.382 Sum_probs=62.3
Q ss_pred cCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccCHHHHhhh
Q 044287 36 LLPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDICWALGT 102 (188)
Q Consensus 36 ~LPkA~I~RImK~~LP~~~rISkDA~~al~eca~eFI~~LtseAne~a~~~kRKTIt~eDVl~AL~~ 102 (188)
-|++..+..+++++-| +..+..|+.++|.+.|.+||.-+++.|...|++-+-.||...||.-.|++
T Consensus 5 vl~k~~L~~Lv~~idp-~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Ler 70 (76)
T 1h3o_B 5 VLTKKKLQDLVREVDP-NEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLER 70 (76)
T ss_dssp SSCHHHHHHHHHHHCS-SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHH
T ss_pred cccHHHHHHHHHhcCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHh
Confidence 4899999999999976 78999999999999999999999999999999999999999999988874
No 47
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=95.95 E-value=0.01 Score=46.08 Aligned_cols=64 Identities=14% Similarity=0.168 Sum_probs=50.9
Q ss_pred cCchhHHHHHHhhhCC---C---CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CccCccCHHHHh
Q 044287 36 LLPIANVGRIMKQILP---A---NAKISKEAKETMQECVSEFISFITSEASEKCRKERR---KTVNGDDICWAL 100 (188)
Q Consensus 36 ~LPkA~I~RImK~~LP---~---~~rISkDA~~al~eca~eFI~~LtseAne~a~~~kR---KTIt~eDVl~AL 100 (188)
.+|+.+..|+++++.. . +.|++.+|..+||++++.|+.-|...+|-.|.|..| |-|+++ +...+
T Consensus 1 LI~klPF~RLVREI~~~~~~~~~~lRfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA~~gGvkRIS~~-iy~e~ 73 (121)
T 2ly8_A 1 LISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLVPRGSKRISGL-IYEEV 73 (121)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCSSCCSSC-HHHHH
T ss_pred CCCccchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCccCccchhHH-HHHHH
Confidence 4789999999988653 2 689999999999999999999999999999888733 345443 44444
No 48
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=95.89 E-value=0.012 Score=43.49 Aligned_cols=49 Identities=18% Similarity=0.196 Sum_probs=41.1
Q ss_pred CchhHHHHHHhhhCC-CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044287 37 LPIANVGRIMKQILP-ANAKISKEAKETMQECVSEFISFITSEASEKCRK 85 (188)
Q Consensus 37 LPkA~I~RImK~~LP-~~~rISkDA~~al~eca~eFI~~LtseAne~a~~ 85 (188)
||+.+|.||++.... ++.||++||..++++....||..-..-|.+..+.
T Consensus 2 ip~~llaRIL~~~F~~~kTrIt~da~~lv~kY~diFVrEAv~Rs~e~ke~ 51 (88)
T 3v9r_B 2 LSKEALIKILSQNEGGNDMKIADEVVPMIQKYLDIFIDEAVLRSLQSHKD 51 (88)
T ss_dssp CCSHHHHHHHTTTSCSSCCEECTTTHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 899999999997775 5789999999999999999998777666654443
No 49
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=87.67 E-value=0.89 Score=37.98 Aligned_cols=66 Identities=18% Similarity=0.238 Sum_probs=51.0
Q ss_pred CchhHHHHHHhhhCC-CCccccHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCCccCccCHHHHhhh
Q 044287 37 LPIANVGRIMKQILP-ANAKISKEAKETMQECVS----EFISFITSEASEKCRKERRKTVNGDDICWALGT 102 (188)
Q Consensus 37 LPkA~I~RImK~~LP-~~~rISkDA~~al~eca~----eFI~~LtseAne~a~~~kRKTIt~eDVl~AL~~ 102 (188)
++...+..|++..+. .+..++.++...|.+.+. ..+..+...|...|...++.+|+.+||..|++.
T Consensus 259 ~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 259 YSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp CCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 455667777775553 246799999999988775 355566667788888889999999999999985
No 50
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=85.35 E-value=1.7 Score=43.18 Aligned_cols=67 Identities=18% Similarity=0.228 Sum_probs=54.4
Q ss_pred cccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccCHHHHhhh
Q 044287 34 ERLLPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDICWALGT 102 (188)
Q Consensus 34 d~~LPkA~I~RImK~~LP~~~rISkDA~~al~eca~eFI~~LtseAne~a~~~kRKTIt~eDVl~AL~~ 102 (188)
.+.+|.+.|.|++|... ..||+..|..-|.-..+=....|..-|...|...+++.|++.||..|+..
T Consensus 102 ~l~~pv~~~~~~l~~~~--~~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~~ 168 (1049)
T 3ksy_A 102 PLSLPVEKIHPLLKEVL--GYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMCA 168 (1049)
T ss_dssp SCSSCHHHHHHHHHHHH--CSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHHH
T ss_pred CccccHHHHHHHhhccc--ccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCccccccccC
Confidence 38899999999997766 46999999888877666555566666777888889999999999998863
No 51
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=82.05 E-value=4.8 Score=33.28 Aligned_cols=77 Identities=10% Similarity=0.075 Sum_probs=56.2
Q ss_pred CchhHHHHHHhhhCCC---CccccHHHHHHHHHHH------------HHHHHHHHHHHHHHHHhcCCCccCccCHHHHhh
Q 044287 37 LPIANVGRIMKQILPA---NAKISKEAKETMQECV------------SEFISFITSEASEKCRKERRKTVNGDDICWALG 101 (188)
Q Consensus 37 LPkA~I~RImK~~LP~---~~rISkDA~~al~eca------------~eFI~~LtseAne~a~~~kRKTIt~eDVl~AL~ 101 (188)
|+...+..+++..+.. ...++.++...|.+.+ --++..+...|...|..+++.+|+.+||..|+.
T Consensus 193 l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~ 272 (389)
T 1fnn_A 193 YTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSK 272 (389)
T ss_dssp CBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Confidence 3446677777665532 3478999999998887 344566667788888888999999999999999
Q ss_pred hcCCCcchHHHH
Q 044287 102 TLGFDDYAGPIR 113 (188)
Q Consensus 102 ~LGF~dyi~~lk 113 (188)
.+....+...+.
T Consensus 273 ~~~~~~~~~~l~ 284 (389)
T 1fnn_A 273 EVLFGISEEVLI 284 (389)
T ss_dssp HHSCCCCHHHHH
T ss_pred HHhhhhHHHHHH
Confidence 876665544443
No 52
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=78.03 E-value=2.4 Score=37.48 Aligned_cols=66 Identities=12% Similarity=0.098 Sum_probs=49.3
Q ss_pred CchhHHHHHHhhhCC-CCccccHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCCCccCccCHHHHhhh
Q 044287 37 LPIANVGRIMKQILP-ANAKISKEAKETMQECV----SEFISFITSEASEKCRKERRKTVNGDDICWALGT 102 (188)
Q Consensus 37 LPkA~I~RImK~~LP-~~~rISkDA~~al~eca----~eFI~~LtseAne~a~~~kRKTIt~eDVl~AL~~ 102 (188)
++...+..+++..+. .+..++.++...|.+.+ -.....|...|..+|..+++.+|+.+||..|+.-
T Consensus 366 ~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~ 436 (456)
T 2c9o_A 366 YTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISEL 436 (456)
T ss_dssp CCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHH
Confidence 344556666665442 24568999998888876 2356667778888999999999999999999865
No 53
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=76.23 E-value=2.3 Score=35.01 Aligned_cols=66 Identities=9% Similarity=0.073 Sum_probs=51.3
Q ss_pred hhHHHHHHhhhCC---CCccccHHHHHHHHHHHH------HHHHHHHHHHHHHHHhcCCCccCccCHHHHhhhcC
Q 044287 39 IANVGRIMKQILP---ANAKISKEAKETMQECVS------EFISFITSEASEKCRKERRKTVNGDDICWALGTLG 104 (188)
Q Consensus 39 kA~I~RImK~~LP---~~~rISkDA~~al~eca~------eFI~~LtseAne~a~~~kRKTIt~eDVl~AL~~LG 104 (188)
...+..|++..+. ....++.++...+.+.+. ..+..+...|...|...++.+|+.+||..|+..+.
T Consensus 203 ~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 277 (387)
T 2v1u_A 203 APQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIE 277 (387)
T ss_dssp HHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh
Confidence 5667777766542 246789999998888876 45566777788888888999999999999998763
No 54
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=72.00 E-value=2.3 Score=28.67 Aligned_cols=31 Identities=26% Similarity=0.308 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHhcCCCccCccCHHHHhhh
Q 044287 72 ISFITSEASEKCRKERRKTVNGDDICWALGT 102 (188)
Q Consensus 72 I~~LtseAne~a~~~kRKTIt~eDVl~AL~~ 102 (188)
|..|..+|...|...++..|+.+|+..||+.
T Consensus 42 i~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~ 72 (78)
T 3kw6_A 42 VKGVCTEAGMYALRERRVHVTQEDFEMAVAK 72 (78)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 6667778888899999999999999999975
No 55
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=69.02 E-value=6.2 Score=32.29 Aligned_cols=70 Identities=7% Similarity=0.037 Sum_probs=51.5
Q ss_pred CchhHHHHHHhhhCC---CCccccHHHHHHHHHHHH------HHHHHHHHHHHHHHHhcCCCccCccCHHHHhhhcCCC
Q 044287 37 LPIANVGRIMKQILP---ANAKISKEAKETMQECVS------EFISFITSEASEKCRKERRKTVNGDDICWALGTLGFD 106 (188)
Q Consensus 37 LPkA~I~RImK~~LP---~~~rISkDA~~al~eca~------eFI~~LtseAne~a~~~kRKTIt~eDVl~AL~~LGF~ 106 (188)
|....+..|++..+. ....++.++...+.+.+. ..+..+...|...|..+++.+|+.+||..|+..+..+
T Consensus 197 l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~~~ 275 (386)
T 2qby_A 197 YNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIERD 275 (386)
T ss_dssp CCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHhhc
Confidence 445667777766432 135789999988888775 2344566778888888899999999999999876543
No 56
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=64.38 E-value=12 Score=27.39 Aligned_cols=38 Identities=8% Similarity=0.058 Sum_probs=31.0
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccCHHHHhhhcC
Q 044287 55 KISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDICWALGTLG 104 (188)
Q Consensus 55 rISkDA~~al~eca~eFI~~LtseAne~a~~~kRKTIt~eDVl~AL~~LG 104 (188)
+++..+..+|.. |...|...+...|.++|++.||=.-+
T Consensus 5 ~~t~~~~~~l~~------------A~~~A~~~~~~~i~~eHlLlaLl~~~ 42 (148)
T 1khy_A 5 RLTNKFQLALAD------------AQSLALGHDNQFIEPLHLMSALLNQE 42 (148)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHTCT
T ss_pred hhhHHHHHHHHH------------HHHHHHHcCCCccCHHHHHHHHHcCC
Confidence 577777777765 77799999999999999999985433
No 57
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=62.68 E-value=5.6 Score=29.35 Aligned_cols=36 Identities=14% Similarity=0.247 Sum_probs=30.2
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccCHHHHhhh
Q 044287 55 KISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDICWALGT 102 (188)
Q Consensus 55 rISkDA~~al~eca~eFI~~LtseAne~a~~~kRKTIt~eDVl~AL~~ 102 (188)
+++..+..+|.. |...|...+...|.++|++.||=.
T Consensus 5 ~~t~~~~~al~~------------A~~~A~~~~h~~i~~eHlLlaLl~ 40 (150)
T 2y1q_A 5 RFTERAQKVLAL------------AQEEALRLGHNNIGTEHILLGLVR 40 (150)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHHH
T ss_pred hhCHHHHHHHHH------------HHHHHHHcCCCCccHHHHHHHHHh
Confidence 577888888765 777999999999999999999854
No 58
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=62.30 E-value=5.4 Score=27.23 Aligned_cols=29 Identities=21% Similarity=0.134 Sum_probs=23.1
Q ss_pred HHHHHHHHHhcCCCccCccCHHHHhhhcC
Q 044287 76 TSEASEKCRKERRKTVNGDDICWALGTLG 104 (188)
Q Consensus 76 tseAne~a~~~kRKTIt~eDVl~AL~~LG 104 (188)
..+|...|...++..|+.+|+..|++..-
T Consensus 41 ~~eAa~~ai~~~~~~i~~~df~~Al~~v~ 69 (82)
T 2dzn_B 41 MQEAGLRAVRKNRYVILQSDLEEAYATQV 69 (82)
T ss_dssp HHHHHHHHHHTTCSEECHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccCCcCHHHHHHHHHHHH
Confidence 34566677777889999999999998763
No 59
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=62.16 E-value=6.9 Score=29.14 Aligned_cols=37 Identities=16% Similarity=0.202 Sum_probs=30.9
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccCHHHHhhhc
Q 044287 55 KISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDICWALGTL 103 (188)
Q Consensus 55 rISkDA~~al~eca~eFI~~LtseAne~a~~~kRKTIt~eDVl~AL~~L 103 (188)
++|..+..+|.. |...|...+...|.++|++.||=.-
T Consensus 6 ~~t~~~~~~l~~------------A~~~A~~~~~~~i~~eHLLlaLl~~ 42 (146)
T 3fh2_A 6 RFTDRARRVIVL------------AQEEARMLNHNYIGTEHILLGLIHE 42 (146)
T ss_dssp GBCHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred hcCHHHHHHHHH------------HHHHHHHcCCCCchHHHHHHHHHhC
Confidence 577888887775 7778999999999999999998653
No 60
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=61.45 E-value=17 Score=28.84 Aligned_cols=58 Identities=12% Similarity=0.238 Sum_probs=53.0
Q ss_pred CchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccCH
Q 044287 37 LPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDI 96 (188)
Q Consensus 37 LPkA~I~RImK~~LP~~~rISkDA~~al~eca~eFI~~LtseAne~a~~~kRKTIt~eDV 96 (188)
+|-+-+.|+++.+. +.-|.|+-..-+...+..=+.-|.-.|...|..++|-+|...|+
T Consensus 3 m~~~~~e~lFR~aa--~LdvdK~d~~r~~d~V~~Kl~DLl~va~~~Ak~n~RdvI~~~DL 60 (148)
T 1wwi_A 3 MKVAEFERLFRQAA--GLDVDKNDLKRVSDFLRNKLYDLLAVAERNAKYNGRDLIFEPDL 60 (148)
T ss_dssp SCHHHHHHHHHHHH--CCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECGGGS
T ss_pred CCHHHHHHHHHHHh--ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccC
Confidence 67788999999998 68888999999999999999999999999999999999999886
No 61
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=61.36 E-value=5.3 Score=27.83 Aligned_cols=34 Identities=21% Similarity=0.181 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHhcCCCccCccCHHHHhhhcCC
Q 044287 72 ISFITSEASEKCRKERRKTVNGDDICWALGTLGF 105 (188)
Q Consensus 72 I~~LtseAne~a~~~kRKTIt~eDVl~AL~~LGF 105 (188)
|..|..+|.-.|.+.++..|+.+|+..||+.+-.
T Consensus 40 l~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~ 73 (88)
T 3vlf_B 40 LRSVCTEAGMFAIRARRKVATEKDFLKAVDKVIS 73 (88)
T ss_dssp HHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhc
Confidence 4555666777888888999999999999987543
No 62
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=59.84 E-value=24 Score=32.36 Aligned_cols=49 Identities=22% Similarity=0.213 Sum_probs=40.3
Q ss_pred ccccHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHhcCCCccCccCHHHHhhh
Q 044287 54 AKISKEAKETMQECVS-------------EFISFITSEASEKCRKERRKTVNGDDICWALGT 102 (188)
Q Consensus 54 ~rISkDA~~al~eca~-------------eFI~~LtseAne~a~~~kRKTIt~eDVl~AL~~ 102 (188)
..++.+|...|.+.+. .-+.-|...|..+|..+++..|+.+||..|+..
T Consensus 313 ~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 313 PHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp CCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 4799999999988653 344556667889999999999999999999964
No 63
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=59.81 E-value=16 Score=29.79 Aligned_cols=50 Identities=10% Similarity=-0.070 Sum_probs=40.0
Q ss_pred CccccHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhcCCCccCccCHHHHhhh
Q 044287 53 NAKISKEAKETMQECVSE-------FISFITSEASEKCRKERRKTVNGDDICWALGT 102 (188)
Q Consensus 53 ~~rISkDA~~al~eca~e-------FI~~LtseAne~a~~~kRKTIt~eDVl~AL~~ 102 (188)
.+.++.++...|.+.+.. -+..+...|...|...++.+|+.+||..|+..
T Consensus 265 ~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~ 321 (350)
T 1g8p_A 265 KVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATM 321 (350)
T ss_dssp GCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHH
Confidence 458999999999887643 34556667788888899999999999998864
No 64
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=59.74 E-value=28 Score=28.55 Aligned_cols=50 Identities=18% Similarity=0.017 Sum_probs=36.0
Q ss_pred CccccHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHhcCCCccCccCHHHHhhh
Q 044287 53 NAKISKEAKETMQECVSEF-----------------------ISFITSEASEKCRKERRKTVNGDDICWALGT 102 (188)
Q Consensus 53 ~~rISkDA~~al~eca~eF-----------------------I~~LtseAne~a~~~kRKTIt~eDVl~AL~~ 102 (188)
++.++.++.+.+.+.+... ...+...|...|.-.+|..|+.+||..|+..
T Consensus 224 ~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~ 296 (331)
T 2r44_A 224 KVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYD 296 (331)
T ss_dssp TCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 4568888888877654321 2234555667788889999999999998875
No 65
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=58.69 E-value=7.2 Score=29.07 Aligned_cols=39 Identities=18% Similarity=0.205 Sum_probs=32.2
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccCHHHHhhhcC
Q 044287 54 AKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDICWALGTLG 104 (188)
Q Consensus 54 ~rISkDA~~al~eca~eFI~~LtseAne~a~~~kRKTIt~eDVl~AL~~LG 104 (188)
-+++..++.+|.. |...|...+...|.++|++.||=.-+
T Consensus 6 ~~~T~~a~~~l~~------------A~~~A~~~~~~~i~~eHLLlaLl~~~ 44 (145)
T 3fes_A 6 NRFTQRAKKAIDL------------AFESAKSLGHNIVGSEHILLGLLREE 44 (145)
T ss_dssp CCBCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHHHHC
T ss_pred cccCHHHHHHHHH------------HHHHHHHcCCCCccHHHHHHHHHhCC
Confidence 3678888888875 67789999999999999999986543
No 66
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=56.82 E-value=5 Score=27.18 Aligned_cols=33 Identities=27% Similarity=0.160 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHhcCCCccCccCHHHHhhhcC
Q 044287 72 ISFITSEASEKCRKERRKTVNGDDICWALGTLG 104 (188)
Q Consensus 72 I~~LtseAne~a~~~kRKTIt~eDVl~AL~~LG 104 (188)
|..|..+|...|...++..|+.+|+..||+..-
T Consensus 40 i~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ 72 (83)
T 3aji_B 40 INSICQESGMLAVRENRYIVLAKDFEKAYKTVI 72 (83)
T ss_dssp HHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHc
Confidence 344556677788888889999999999998753
No 67
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=56.73 E-value=6.6 Score=27.44 Aligned_cols=32 Identities=25% Similarity=0.317 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHhcCCCccCccCHHHHhhhc
Q 044287 72 ISFITSEASEKCRKERRKTVNGDDICWALGTL 103 (188)
Q Consensus 72 I~~LtseAne~a~~~kRKTIt~eDVl~AL~~L 103 (188)
|..|..+|.-.|....+..|+.+|+..||+..
T Consensus 50 L~~l~~eAa~~alr~~~~~I~~~df~~Al~~v 81 (86)
T 2krk_A 50 VKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 81 (86)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34455677778888888999999999999753
No 68
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=56.34 E-value=6.7 Score=28.66 Aligned_cols=33 Identities=18% Similarity=0.318 Sum_probs=26.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccCHHHHh
Q 044287 56 ISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDICWAL 100 (188)
Q Consensus 56 ISkDA~~al~eca~eFI~~LtseAne~a~~~kRKTIt~eDVl~AL 100 (188)
+|..+..+|.. |...|...+...|.++|++.||
T Consensus 2 ~t~~~~~~l~~------------A~~~A~~~~~~~i~~eHlLlaL 34 (143)
T 1k6k_A 2 LNQELELSLNM------------AFARAREHRHEFMTVEHLLLAL 34 (143)
T ss_dssp BCHHHHHHHHH------------HHHHHHHHTBSEECHHHHHHHH
T ss_pred CCHHHHHHHHH------------HHHHHHHcCCCCcCHHHHHHHH
Confidence 45666666654 7778999999999999999998
No 69
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=55.36 E-value=15 Score=29.86 Aligned_cols=64 Identities=14% Similarity=0.164 Sum_probs=56.4
Q ss_pred ccccc--cCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccCH
Q 044287 31 KEQER--LLPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDI 96 (188)
Q Consensus 31 ~~~d~--~LPkA~I~RImK~~LP~~~rISkDA~~al~eca~eFI~~LtseAne~a~~~kRKTIt~eDV 96 (188)
+.++. -+|.+-+.|+++.+. +.-|.|+-...+...+..=+.-|.-.|...|..++|-+|...|+
T Consensus 19 ~~~~Mm~vmg~~kferlFR~aa--gLDvdK~d~kr~~d~V~~Kl~DLl~va~~~Ak~NgRDvI~~~DL 84 (171)
T 1r4v_A 19 KIETMLRPKGFDKLDHYFRTEL--DIDLTDETIELLLNSVKAAFGKLFYGAEQRARWNGRDFIALADL 84 (171)
T ss_dssp --CCTTSCTTHHHHHHHHHHHH--CCCCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEECGGGS
T ss_pred HHHHHHhcCChHHHHHHHHHHh--ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccC
Confidence 34445 689999999999998 68888999999999999999999999999999999999999886
No 70
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=50.67 E-value=14 Score=30.55 Aligned_cols=66 Identities=6% Similarity=-0.008 Sum_probs=46.4
Q ss_pred CchhHHHHHHhhhCC---CCccccHHHHHHHHHHHH------HHHHHHHHHHHHHHHhcCCCccCccCHHHHhhhcC
Q 044287 37 LPIANVGRIMKQILP---ANAKISKEAKETMQECVS------EFISFITSEASEKCRKERRKTVNGDDICWALGTLG 104 (188)
Q Consensus 37 LPkA~I~RImK~~LP---~~~rISkDA~~al~eca~------eFI~~LtseAne~a~~~kRKTIt~eDVl~AL~~LG 104 (188)
|....+..|++..+. ....++.++...+.+.+. ..+..+...|...|. +..+|+.+||..|+..+.
T Consensus 197 l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 197 YDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp CCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHh
Confidence 455677777777542 145789999988888775 123345555666665 677899999999998864
No 71
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=48.33 E-value=19 Score=26.42 Aligned_cols=63 Identities=13% Similarity=0.119 Sum_probs=40.7
Q ss_pred CchhHHHHHHhhhCC-CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccCHHHHhh
Q 044287 37 LPIANVGRIMKQILP-ANAKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDICWALG 101 (188)
Q Consensus 37 LPkA~I~RImK~~LP-~~~rISkDA~~al~eca~eFI~~LtseAne~a~~~kRKTIt~eDVl~AL~ 101 (188)
++...+..+++..+. .+..++.++...|.+.+.--+..+-......+... ++|+.+||..++.
T Consensus 161 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~--~~I~~~~v~~~~~ 224 (226)
T 2chg_A 161 VPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIG--EVVDADTIYQITA 224 (226)
T ss_dssp CCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SCBCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--ceecHHHHHHHhc
Confidence 455666666665542 13568999988888776544444444444444433 6899999998875
No 72
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=45.58 E-value=20 Score=26.51 Aligned_cols=40 Identities=15% Similarity=0.187 Sum_probs=32.6
Q ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccCHHHHhhhcC
Q 044287 53 NAKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDICWALGTLG 104 (188)
Q Consensus 53 ~~rISkDA~~al~eca~eFI~~LtseAne~a~~~kRKTIt~eDVl~AL~~LG 104 (188)
...+|..+..+|.. |...|...+...|+.+|++.||=.-+
T Consensus 79 ~~~~s~~~~~vl~~------------A~~~A~~~~~~~v~~eHlLlAll~~~ 118 (145)
T 3fes_A 79 DIVLSPRSKQILEL------------SGMFANKLKTNYIGTEHILLAIIQEG 118 (145)
T ss_dssp CCEECHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHhCC
Confidence 35688888888776 66788999999999999999996544
No 73
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=43.35 E-value=41 Score=25.24 Aligned_cols=62 Identities=2% Similarity=-0.019 Sum_probs=38.5
Q ss_pred chhHHHHHHhhhCC-CCccccHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCCccCccCHHHHhh
Q 044287 38 PIANVGRIMKQILP-ANAKISKEAKETMQECVS----EFISFITSEASEKCRKERRKTVNGDDICWALG 101 (188)
Q Consensus 38 PkA~I~RImK~~LP-~~~rISkDA~~al~eca~----eFI~~LtseAne~a~~~kRKTIt~eDVl~AL~ 101 (188)
+...+..+++..+. .+..++.++...|.+.+. ..+..| ..|...|..++ ++|+.+||..+|+
T Consensus 175 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l-~~~~~~a~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 175 MDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLRTLFDVL-DRLDKASMVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp CGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTCHHHHHHHH-HHHHHHHHHHT-CCCCHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHH-HHHHHHHHHhC-CCCcHHHHHHHhh
Confidence 34455556655442 246789999988887654 233333 33444555454 4699999998875
No 74
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=42.12 E-value=27 Score=25.81 Aligned_cols=64 Identities=13% Similarity=0.138 Sum_probs=41.1
Q ss_pred CchhHHHHHHhhhCC-CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccCHHHHhh
Q 044287 37 LPIANVGRIMKQILP-ANAKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDICWALG 101 (188)
Q Consensus 37 LPkA~I~RImK~~LP-~~~rISkDA~~al~eca~eFI~~LtseAne~a~~~kRKTIt~eDVl~AL~ 101 (188)
|+...+..+++..+. .+..++.++...|.+.+.--..++-..+...+. .++.+|+.+||..++.
T Consensus 185 l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~~-~~~~~i~~~~v~~~~~ 249 (250)
T 1njg_A 185 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAVSAMLG 249 (250)
T ss_dssp CCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHT-TTTSSBCHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh-ccCceecHHHHHHHhC
Confidence 445566777765552 245789999888888775545444444333333 3455899999988763
No 75
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=40.62 E-value=51 Score=27.47 Aligned_cols=68 Identities=16% Similarity=0.226 Sum_probs=46.2
Q ss_pred hHHHHHHhhhCC-CCccccHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCccCccCHHHHhhhcCCCc
Q 044287 40 ANVGRIMKQILP-ANAKISKEAKETMQECVS---EFISFITSEASEKCRKERRKTVNGDDICWALGTLGFDD 107 (188)
Q Consensus 40 A~I~RImK~~LP-~~~rISkDA~~al~eca~---eFI~~LtseAne~a~~~kRKTIt~eDVl~AL~~LGF~d 107 (188)
..+..|++.... -++.++.++...|.+.+. -.+.-+...+.+.|...++..|+.++|..||..++++.
T Consensus 183 ~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~~~~~~ 254 (334)
T 1in4_A 183 KELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLNIDD 254 (334)
T ss_dssp HHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHhCCCc
Confidence 355555554321 145688888888876532 23444555666777777888899999999999887654
No 76
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=39.60 E-value=17 Score=28.40 Aligned_cols=37 Identities=16% Similarity=0.201 Sum_probs=30.0
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccCHHHHhhhc
Q 044287 55 KISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDICWALGTL 103 (188)
Q Consensus 55 rISkDA~~al~eca~eFI~~LtseAne~a~~~kRKTIt~eDVl~AL~~L 103 (188)
+++..++.+|.. |...|...+...|.++|++.||=.-
T Consensus 24 kfT~~a~~aL~~------------A~~~A~~~~h~~I~~EHLLlaLL~~ 60 (171)
T 3zri_A 24 KLNAQSKLALEQ------------AASLCIERQHPEVTLEHYLDVLLDN 60 (171)
T ss_dssp HBCHHHHHHHHH------------HHHHHHHHTCSEECHHHHHHHHTTC
T ss_pred HcCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHHc
Confidence 467777777765 7778999999999999999998654
No 77
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=39.34 E-value=51 Score=24.22 Aligned_cols=39 Identities=13% Similarity=0.096 Sum_probs=32.0
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccCHHHHhhhcC
Q 044287 54 AKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDICWALGTLG 104 (188)
Q Consensus 54 ~rISkDA~~al~eca~eFI~~LtseAne~a~~~kRKTIt~eDVl~AL~~LG 104 (188)
..+|..+..+|.. |...|...+...|+.+|++.||=.-+
T Consensus 80 ~~~s~~~~~vL~~------------A~~~a~~~~~~~i~~eHlLlall~~~ 118 (146)
T 3fh2_A 80 IPFTPRAKKVLEL------------SLREGLQMGHKYIGTEFLLLGLIREG 118 (146)
T ss_dssp CCBCHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred CcCCHHHHHHHHH------------HHHHHHHcCCCcCcHHHHHHHHHhCC
Confidence 5688888888876 66688899999999999999986443
No 78
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=38.24 E-value=20 Score=28.53 Aligned_cols=33 Identities=27% Similarity=0.242 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHhcCCCccCccCHHHHhhhc
Q 044287 71 FISFITSEASEKCRKERRKTVNGDDICWALGTL 103 (188)
Q Consensus 71 FI~~LtseAne~a~~~kRKTIt~eDVl~AL~~L 103 (188)
-|..|...|...|...++.+|+.+||..|++.+
T Consensus 226 ~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~ 258 (285)
T 3h4m_A 226 ELKAICTEAGMNAIRELRDYVTMDDFRKAVEKI 258 (285)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHH
Confidence 466677888889999999999999999998653
No 79
>2kru_A Light-independent protochlorophyllide reductase subunit B; NESG, PSI, BCHB, bacteriochlorophyll biosynthesis, chlorophyll biosynthesis; NMR {Chlorobaculum tepidum}
Probab=37.93 E-value=15 Score=25.23 Aligned_cols=51 Identities=20% Similarity=0.204 Sum_probs=41.3
Q ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCccCccCHHHHhhhcC
Q 044287 53 NAKISKEAKETMQECVSEFISFITSEASE-KCRKERRKTVNGDDICWALGTLG 104 (188)
Q Consensus 53 ~~rISkDA~~al~eca~eFI~~LtseAne-~a~~~kRKTIt~eDVl~AL~~LG 104 (188)
++..+.||...|.+ +--||.--+....+ .|...|...||.+.+..|-..+|
T Consensus 3 ~l~Wt~EAe~~Lkk-IP~FVR~kvrr~tE~~Are~G~~~IT~ev~~~AK~~~~ 54 (63)
T 2kru_A 3 ELSWTAEAEKMLGK-VPFFVRKKVRKNTDNYAREIGEPVVTADVFRKAKEHLG 54 (63)
T ss_dssp CCEECHHHHHHHTT-SCHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHh-CCHHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHHHHhh
Confidence 46789999999888 66787776666555 89999999999999998876654
No 80
>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density, SAM domain, shank, scaffolding protein, structural protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB: 2f44_A
Probab=37.34 E-value=14 Score=25.10 Aligned_cols=23 Identities=9% Similarity=-0.020 Sum_probs=19.1
Q ss_pred cCccCHHHHhhhcCCCcchHHHH
Q 044287 91 VNGDDICWALGTLGFDDYAGPIR 113 (188)
Q Consensus 91 It~eDVl~AL~~LGF~dyi~~lk 113 (188)
=+++||..-|+.+||+.|++...
T Consensus 5 Ws~~~V~~WL~~lgl~~Y~~~F~ 27 (76)
T 2f3n_A 5 WSKFDVGDWLESIHLGEHRDRFE 27 (76)
T ss_dssp CCHHHHHHHHHHTTCGGGHHHHH
T ss_pred CCHHHHHHHHHHCCCHHHHHHHH
Confidence 36789999999999999887654
No 81
>2d8c_A Phosphatidylcholine:ceramide cholinephosphotransferase 1; cell-free protein synthesis, protein regulation, lipid metabolism, structural genomics; NMR {Mus musculus} SCOP: a.60.1.2
Probab=35.57 E-value=13 Score=26.94 Aligned_cols=22 Identities=14% Similarity=0.169 Sum_probs=19.9
Q ss_pred cCccCHHHHhhhcCCCcchHHH
Q 044287 91 VNGDDICWALGTLGFDDYAGPI 112 (188)
Q Consensus 91 It~eDVl~AL~~LGF~dyi~~l 112 (188)
-+++||..-|+.+||.+|++..
T Consensus 20 Ws~edV~~WL~~~Gl~~Y~~~F 41 (97)
T 2d8c_A 20 WSPKKVADWLLENAMPEYCEPL 41 (97)
T ss_dssp CCTTHHHHHHHHTTCTTTTTTT
T ss_pred CCHHHHHHHHHHcCCHHHHHHH
Confidence 5899999999999999999765
No 82
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=35.32 E-value=1.1e+02 Score=21.15 Aligned_cols=36 Identities=11% Similarity=0.064 Sum_probs=24.5
Q ss_pred HHHHHHHhcCCCccCccCHHHHhhhcCCCcchHHHH
Q 044287 78 EASEKCRKERRKTVNGDDICWALGTLGFDDYAGPIR 113 (188)
Q Consensus 78 eAne~a~~~kRKTIt~eDVl~AL~~LGF~dyi~~lk 113 (188)
.+......++.-.|+.+++..+|..+|..--...+.
T Consensus 100 ~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~ 135 (161)
T 3fwb_A 100 RAFQLFDDDHTGKISIKNLRRVAKELGETLTDEELR 135 (161)
T ss_dssp HHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHHcCCCCCeEeHHHHHHHHHHhCCCCCHHHHH
Confidence 345555667777899999999999888653333333
No 83
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC, hydrolase; 1.80A {Homo sapiens}
Probab=34.14 E-value=1.5e+02 Score=22.25 Aligned_cols=29 Identities=14% Similarity=0.133 Sum_probs=25.1
Q ss_pred HHHHHHHHhcCCCccCccCHHHHhhhc----CCC
Q 044287 77 SEASEKCRKERRKTVNGDDICWALGTL----GFD 106 (188)
Q Consensus 77 seAne~a~~~kRKTIt~eDVl~AL~~L----GF~ 106 (188)
..|..... ++--+|+.+++..+|..+ |+.
T Consensus 79 ~~aF~~fD-d~~G~I~~~El~~~l~~l~~~~G~~ 111 (174)
T 2i7a_A 79 QHVFQKVQ-TSPGVLLSSDLWKAIENTDFLRGIF 111 (174)
T ss_dssp HHHHHHHC-SBTTBEEGGGHHHHHHTCGGGTTCC
T ss_pred HHHHHHhc-CCCCcCCHHHHHHHHHHhHhccCCC
Confidence 46777888 888899999999999999 875
No 84
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=34.13 E-value=67 Score=23.10 Aligned_cols=38 Identities=16% Similarity=0.169 Sum_probs=30.4
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccCHHHHhhhc
Q 044287 54 AKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDICWALGTL 103 (188)
Q Consensus 54 ~rISkDA~~al~eca~eFI~~LtseAne~a~~~kRKTIt~eDVl~AL~~L 103 (188)
..+|..+..+|.. |...|..-+...|+.+|++.||=.-
T Consensus 78 ~~~s~~~~~~l~~------------A~~~A~~~~~~~i~~ehLLlall~~ 115 (143)
T 1k6k_A 78 TQPTLSFQRVLQR------------AVFHVQSSGRNEVTGANVLVAIFSE 115 (143)
T ss_dssp CEECHHHHHHHHH------------HHHHHHSSSCSCBCHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHH------------HHHHHHHcCCCccCHHHHHHHHHhC
Confidence 4577777777765 6778888899999999999999653
No 85
>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain, alternative splicing, cytoplasm, membrane, metal-binding, phorbol-ester binding; 2.90A {Homo sapiens}
Probab=34.11 E-value=16 Score=24.99 Aligned_cols=24 Identities=13% Similarity=0.164 Sum_probs=20.0
Q ss_pred ccCccCHHHHhhhcCCCcchHHHH
Q 044287 90 TVNGDDICWALGTLGFDDYAGPIR 113 (188)
Q Consensus 90 TIt~eDVl~AL~~LGF~dyi~~lk 113 (188)
.-+++||..-|+.+||+.|++...
T Consensus 9 ~Ws~~~V~~WL~~lgl~~Y~~~F~ 32 (81)
T 3bq7_A 9 LWGTEEVAAWLEHLSLCEYKDIFT 32 (81)
T ss_dssp GCCHHHHHHHHHHTTCGGGHHHHH
T ss_pred hCCHHHHHHHHHHCCCHHHHHHHH
Confidence 357889999999999999987654
No 86
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=31.87 E-value=92 Score=25.68 Aligned_cols=68 Identities=12% Similarity=0.028 Sum_probs=49.4
Q ss_pred CchhHHHHHHhhhCC---CCccccHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhcCCCccCccCHHHHhhhcC
Q 044287 37 LPIANVGRIMKQILP---ANAKISKEAKETMQECVS---------EFISFITSEASEKCRKERRKTVNGDDICWALGTLG 104 (188)
Q Consensus 37 LPkA~I~RImK~~LP---~~~rISkDA~~al~eca~---------eFI~~LtseAne~a~~~kRKTIt~eDVl~AL~~LG 104 (188)
|+...+..|++..+. ....++.++...|.+.+. -++..+...|...|...++.+|+.+||..++..+.
T Consensus 215 l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 294 (412)
T 1w5s_A 215 YKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENE 294 (412)
T ss_dssp CCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Confidence 445667777754331 123588888888887776 36777777788888888899999999998887654
No 87
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=31.83 E-value=34 Score=26.91 Aligned_cols=33 Identities=12% Similarity=0.082 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHhcCCCccCccCHHHHhhhcC
Q 044287 72 ISFITSEASEKCRKERRKTVNGDDICWALGTLG 104 (188)
Q Consensus 72 I~~LtseAne~a~~~kRKTIt~eDVl~AL~~LG 104 (188)
|..+...|...|...++.+|+.+||..|++.+-
T Consensus 221 l~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~ 253 (257)
T 1lv7_A 221 LANLVNEAALFAARGNKRVVSMVEFEKAKDKIM 253 (257)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHh
Confidence 445666778888888999999999999998753
No 88
>2l09_A ASR4154 protein; proto-chlorophyllide reductase 57 KD subunit superfamily, ST genomics, PSI-2, protein structure initiative; NMR {Nostoc SP}
Probab=31.61 E-value=16 Score=24.94 Aligned_cols=49 Identities=16% Similarity=0.145 Sum_probs=38.3
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCccCccCHHHHhhhc
Q 044287 54 AKISKEAKETMQECVSEFISFITSEASE-KCRKERRKTVNGDDICWALGTL 103 (188)
Q Consensus 54 ~rISkDA~~al~eca~eFI~~LtseAne-~a~~~kRKTIt~eDVl~AL~~L 103 (188)
+..+.||...|.+ +--||.--+....+ .|...|...||.+.+..|-..+
T Consensus 3 l~Wt~EAe~~Lkk-IP~FVR~kvrr~tE~~Are~G~~~IT~ev~~~AK~~~ 52 (62)
T 2l09_A 3 LRWTSEAKTKLKN-IPFFARSQAKARIEQLARQAEQDIVTPELVEQARLEF 52 (62)
T ss_dssp CEECHHHHHHHHT-SCGGGHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHh-CCHHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHHHHH
Confidence 5678888888887 55677666665555 8999999999999998876654
No 89
>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus}
Probab=31.58 E-value=17 Score=24.21 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=18.4
Q ss_pred cCccCHHHHhhhcCCCcchHHH
Q 044287 91 VNGDDICWALGTLGFDDYAGPI 112 (188)
Q Consensus 91 It~eDVl~AL~~LGF~dyi~~l 112 (188)
=+++||..-|..+||++|++..
T Consensus 7 Ws~~~V~~WL~~~gl~~y~~~F 28 (74)
T 2gle_A 7 WSVQQVSHWLVGLSLDQYVSEF 28 (74)
T ss_dssp CCSGGGHHHHHHTTTHHHHHHH
T ss_pred CCHHHHHHHHHHCCCHHHHHHH
Confidence 4789999999999998887654
No 90
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.78 E-value=28 Score=31.38 Aligned_cols=32 Identities=25% Similarity=0.220 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHhcCCCccCccCHHHHhhh
Q 044287 71 FISFITSEASEKCRKERRKTVNGDDICWALGT 102 (188)
Q Consensus 71 FI~~LtseAne~a~~~kRKTIt~eDVl~AL~~ 102 (188)
=|..|..+|.-.|..+++..|+.+|+..||+.
T Consensus 390 Di~~l~~eA~~~air~~~~~i~~~d~~~Al~~ 421 (437)
T 4b4t_L 390 DIRNCATEAGFFAIRDDRDHINPDDLMKAVRK 421 (437)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 36667778888898999999999999999864
No 91
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.67 E-value=29 Score=31.32 Aligned_cols=33 Identities=15% Similarity=0.216 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHhcCCCccCccCHHHHhhhc
Q 044287 71 FISFITSEASEKCRKERRKTVNGDDICWALGTL 103 (188)
Q Consensus 71 FI~~LtseAne~a~~~kRKTIt~eDVl~AL~~L 103 (188)
-|..|..+|.-.|...++..|+.+|+..||+..
T Consensus 390 Di~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v 422 (434)
T 4b4t_M 390 QLKAVTVEAGMIALRNGQSSVKHEDFVEGISEV 422 (434)
T ss_dssp HHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 466777888888989999999999999999764
No 92
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.54 E-value=29 Score=31.70 Aligned_cols=66 Identities=21% Similarity=0.170 Sum_probs=41.3
Q ss_pred cCchhH-HHHHHhhhCCCCccccHHH-HHHHHHHH----HHHHHHHHHHHHHHHHhcCCCccCccCHHHHhhh
Q 044287 36 LLPIAN-VGRIMKQILPANAKISKEA-KETMQECV----SEFISFITSEASEKCRKERRKTVNGDDICWALGT 102 (188)
Q Consensus 36 ~LPkA~-I~RImK~~LP~~~rISkDA-~~al~eca----~eFI~~LtseAne~a~~~kRKTIt~eDVl~AL~~ 102 (188)
.+|-.. -..|++-.+. .+.++.|. .+.|.+.+ --=|..|..+|.-.|..+++..|+.+|+..|++.
T Consensus 351 ~lPd~~~R~~Il~~~l~-~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~r 422 (437)
T 4b4t_I 351 ENPDLSTKKKILGIHTS-KMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKER 422 (437)
T ss_dssp CCCCHHHHHHHHHHHHT-TSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHhc-CCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 455432 2345554442 34444432 34444433 2346677788888999999999999999999864
No 93
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=30.29 E-value=65 Score=21.21 Aligned_cols=36 Identities=11% Similarity=0.135 Sum_probs=26.6
Q ss_pred ccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHH
Q 044287 35 RLLPIANVGRIMKQILPANAKISKEAKETMQECVSEF 71 (188)
Q Consensus 35 ~~LPkA~I~RImK~~LP~~~rISkDA~~al~eca~eF 71 (188)
..++.++|.|++...- ....||.+.+..|.+++.++
T Consensus 10 aGVS~sTVSrvLng~~-~~~~vs~et~~rI~~aa~~l 45 (65)
T 1uxc_A 10 AGVSRTTASYVINGKA-KQYRVSDKTVEKVMAVVREH 45 (65)
T ss_dssp HTSCHHHHHHHHHTCT-TTTTCTTHHHHHHHHHHHHH
T ss_pred HCcCHHHHHHHHcCCC-CCCCCCHHHHHHHHHHHHHh
Confidence 3578999999998642 12379999999888877654
No 94
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1}
Probab=30.13 E-value=67 Score=24.16 Aligned_cols=80 Identities=11% Similarity=0.070 Sum_probs=42.8
Q ss_pred ccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccCHHHHhhhcCCCcchHHHHH
Q 044287 35 RLLPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDICWALGTLGFDDYAGPIRR 114 (188)
Q Consensus 35 ~~LPkA~I~RImK~~LP~~~rISkDA~~al~eca~eFI~~LtseAne~a~~~kRKTIt~eDVl~AL~~LGF~dyi~~lk~ 114 (188)
..|....+.++-+-.- ..++.+.+...|....+.--.--...+......++--+|+.+++..+|..+|+.--...+..
T Consensus 20 ~~l~~~~~~~l~~f~~--~~~lk~~~l~~i~~~l~~~e~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~~~~~~~ 97 (197)
T 3pm8_A 20 VELSSTLLKNLKNFKK--ENELKKIALTIIAKHLCDVEINNLRNIFIALDVDNSGTLSSQEILDGLKKIGYQKIPPDIHQ 97 (197)
T ss_dssp CCCCTTHHHHHHHTTT--SCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHC----CHHHHH
T ss_pred CCCCHHHHHHHHHHHH--ccHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCCCCHHHHHH
Confidence 3466666666654432 23455555544443322211111123455566777889999999999999988533334444
Q ss_pred HH
Q 044287 115 YL 116 (188)
Q Consensus 115 ~L 116 (188)
.+
T Consensus 98 l~ 99 (197)
T 3pm8_A 98 VL 99 (197)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 95
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.72 E-value=30 Score=31.08 Aligned_cols=32 Identities=28% Similarity=0.314 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHhcCCCccCccCHHHHhhh
Q 044287 71 FISFITSEASEKCRKERRKTVNGDDICWALGT 102 (188)
Q Consensus 71 FI~~LtseAne~a~~~kRKTIt~eDVl~AL~~ 102 (188)
=|..|..+|.-.|..++|..|+.+|+..||++
T Consensus 357 Di~~l~~eA~~~Air~~~~~vt~~Df~~Al~~ 388 (405)
T 4b4t_J 357 DVKGVCTEAGMYALRERRIHVTQEDFELAVGK 388 (405)
T ss_dssp HHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 46677788888999999999999999999864
No 96
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.19 E-value=27 Score=31.43 Aligned_cols=32 Identities=25% Similarity=0.244 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHhcCCCccCccCHHHHhhh
Q 044287 71 FISFITSEASEKCRKERRKTVNGDDICWALGT 102 (188)
Q Consensus 71 FI~~LtseAne~a~~~kRKTIt~eDVl~AL~~ 102 (188)
=|..|..+|.-.|..++|..|+.+|+..|+..
T Consensus 382 di~~l~~eA~~~a~r~~~~~i~~~d~~~A~~~ 413 (428)
T 4b4t_K 382 VIAAIMQEAGLRAVRKNRYVILQSDLEEAYAT 413 (428)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Confidence 36777788888999999999999999999864
No 97
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=29.19 E-value=23 Score=27.56 Aligned_cols=33 Identities=21% Similarity=0.234 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHhcCCCccCccCHHHHhhhc
Q 044287 71 FISFITSEASEKCRKERRKTVNGDDICWALGTL 103 (188)
Q Consensus 71 FI~~LtseAne~a~~~kRKTIt~eDVl~AL~~L 103 (188)
-|..|...|...|...++.+|+.+||..|++.+
T Consensus 217 ~l~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~ 249 (262)
T 2qz4_A 217 DIANICNEAALHAAREGHTSVHTLNFEYAVERV 249 (262)
T ss_dssp HHHHHHHHHHTC--------CCBCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 455566677777778888999999999888654
No 98
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=28.99 E-value=49 Score=24.04 Aligned_cols=37 Identities=19% Similarity=0.209 Sum_probs=28.8
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccCHHHHhhh
Q 044287 54 AKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDICWALGT 102 (188)
Q Consensus 54 ~rISkDA~~al~eca~eFI~~LtseAne~a~~~kRKTIt~eDVl~AL~~ 102 (188)
..+|..+..+|.. |...|..-+...|+.+|++.||=.
T Consensus 78 ~~~s~~~~~vL~~------------A~~~A~~~~~~~i~~ehlLlall~ 114 (150)
T 2y1q_A 78 IHYTPRAKKVIEL------------SMDEARKLGHSYVGTEHILLGLIR 114 (150)
T ss_dssp CEECHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH------------HHHHHHHcCCCeecHHHHHHHHHh
Confidence 4567776666654 677888888999999999999854
No 99
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.27 E-value=30 Score=31.75 Aligned_cols=32 Identities=22% Similarity=0.209 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHhcCCCccCccCHHHHhhh
Q 044287 71 FISFITSEASEKCRKERRKTVNGDDICWALGT 102 (188)
Q Consensus 71 FI~~LtseAne~a~~~kRKTIt~eDVl~AL~~ 102 (188)
=|..|..+|.-.|..++++.|+.+|+..||++
T Consensus 418 DI~~l~~eAa~~Air~~~~~it~~Df~~Al~k 449 (467)
T 4b4t_H 418 ELRSVCTEAGMFAIRARRKVATEKDFLKAVDK 449 (467)
T ss_dssp HHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 36677788888899999999999999999975
No 100
>1bh9_A TAFII18; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_A*
Probab=26.85 E-value=1.2e+02 Score=18.99 Aligned_cols=39 Identities=21% Similarity=0.248 Sum_probs=31.0
Q ss_pred HHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 044287 42 VGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASE 81 (188)
Q Consensus 42 I~RImK~~LP~~~rISkDA~~al~eca~eFI~~LtseAne 81 (188)
|+.+|-.-+ +...-..|...+|-+...+||..++..|.+
T Consensus 6 i~~mMy~fG-D~~~P~~ETv~llEeiV~~~i~~l~~~A~~ 44 (45)
T 1bh9_A 6 LRCMMYGFG-DDQNPYTESVDILEDLVIEFITEMTHKAMS 44 (45)
T ss_dssp HHHHHHHTT-SCSSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCCCCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 555555544 456678899999999999999999998865
No 101
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A
Probab=26.81 E-value=1.1e+02 Score=20.17 Aligned_cols=78 Identities=5% Similarity=0.012 Sum_probs=42.8
Q ss_pred cCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccCHHHHhhhc---CCCcchHHH
Q 044287 36 LLPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDICWALGTL---GFDDYAGPI 112 (188)
Q Consensus 36 ~LPkA~I~RImK~~LP~~~rISkDA~~al~eca~eFI~~LtseAne~a~~~kRKTIt~eDVl~AL~~L---GF~dyi~~l 112 (188)
.++..-|.++++..= .+-.|+-+-...+......- ..-...+......++.-.|+.+++..+|..+ |..--...+
T Consensus 6 ~~~~~ei~~~~~~~D-~~g~i~~~eF~~~~~~~~~~-~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~ 83 (109)
T 3fs7_A 6 ILSAKDIESALSSCQ-AADSFNYKSFFSTVGLSSKT-PDQIKKVFGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAET 83 (109)
T ss_dssp TSCHHHHHHHHHHTC-STTCCCHHHHHHHHTCTTCC-HHHHHHHHHHHSTTCSSSBCHHHHHTTGGGTCTTSCCCCHHHH
T ss_pred cCCHHHHHHHHHhcC-CCCcCcHHHHHHHHhcCCCc-HHHHHHHHHHHCCCCCCeEeHHHHHHHHHHHhcccccCCHHHH
Confidence 466677777777653 34445533221111000000 0012346666777888889999999999999 554333344
Q ss_pred HHH
Q 044287 113 RRY 115 (188)
Q Consensus 113 k~~ 115 (188)
...
T Consensus 84 ~~~ 86 (109)
T 3fs7_A 84 KAF 86 (109)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 102
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=26.63 E-value=58 Score=25.31 Aligned_cols=38 Identities=21% Similarity=0.045 Sum_probs=32.1
Q ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCccCccCHHHHhhh
Q 044287 53 NAKISKEAKETMQECVSEFISFITSEASEKCR-KERRKTVNGDDICWALGT 102 (188)
Q Consensus 53 ~~rISkDA~~al~eca~eFI~~LtseAne~a~-~~kRKTIt~eDVl~AL~~ 102 (188)
...+|..+..+|.+ |...|. .-|...|+.+||+-||=.
T Consensus 96 ~~~~S~~l~~vL~~------------A~~~A~l~~gd~~I~teHLLLALl~ 134 (171)
T 3zri_A 96 YPAFSPLLVELLQE------------AWLLSSTELEQAELRSGAIFLAALT 134 (171)
T ss_dssp CCEECHHHHHHHHH------------HHHHHHTTTCCSSBCHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHH------------HHHHHHHHcCCCEEcHHHHHHHHHh
Confidence 35688998888886 777899 999999999999999843
No 103
>1kw4_A Polyhomeotic; SAM domain, polycomb group, polymer, DNA binding protein; 1.75A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk1_A
Probab=26.42 E-value=26 Score=24.73 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=20.1
Q ss_pred ccCccCHHHHhhhc-CCCcchHHHHH
Q 044287 90 TVNGDDICWALGTL-GFDDYAGPIRR 114 (188)
Q Consensus 90 TIt~eDVl~AL~~L-GF~dyi~~lk~ 114 (188)
.-+.+||..-|+.+ ||++|+....+
T Consensus 16 ~Ws~edV~~wL~~l~gl~~y~~~F~~ 41 (89)
T 1kw4_A 16 SWSVDDVSNFIRELPGCQDYVDDFIQ 41 (89)
T ss_dssp GCCHHHHHHHHHTSTTCGGGHHHHHH
T ss_pred hCCHHHHHHHHHHCcChHHHHHHHHH
Confidence 35789999999999 99998876543
No 104
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=26.40 E-value=69 Score=28.32 Aligned_cols=38 Identities=16% Similarity=0.267 Sum_probs=31.2
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccCHHHHhhhcC
Q 044287 55 KISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDICWALGTLG 104 (188)
Q Consensus 55 rISkDA~~al~eca~eFI~~LtseAne~a~~~kRKTIt~eDVl~AL~~LG 104 (188)
+++..+..+|.. |...|...+...|.++|++.||=.-+
T Consensus 5 ~ft~~a~~al~~------------A~~~A~~~~h~~v~~eHLLlaLl~~~ 42 (468)
T 3pxg_A 5 RFTERAQKVLAL------------AQEEALRLGHNNIGTEHILLGLVREG 42 (468)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHHHSC
T ss_pred hhCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHhcc
Confidence 578888888775 66789999999999999999886543
No 105
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=26.25 E-value=98 Score=25.13 Aligned_cols=68 Identities=10% Similarity=0.103 Sum_probs=46.8
Q ss_pred hhHHHHHHhhhCC-CCccccHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCCCccCccCHHHHhhhcCCC
Q 044287 39 IANVGRIMKQILP-ANAKISKEAKETMQECVSE---FISFITSEASEKCRKERRKTVNGDDICWALGTLGFD 106 (188)
Q Consensus 39 kA~I~RImK~~LP-~~~rISkDA~~al~eca~e---FI~~LtseAne~a~~~kRKTIt~eDVl~AL~~LGF~ 106 (188)
...+..|++..+. .+..++.++...|.+.+.- .+..+...|...|...+..+|+.+|+..++..+++.
T Consensus 186 ~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~ 257 (338)
T 3pfi_A 186 DSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNSLGVN 257 (338)
T ss_dssp HHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHhCCc
Confidence 4455555555442 2456899999988875422 333444556667777888899999999999987765
No 106
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A; EF-hand like, unknown function; 1.60A {Homo sapiens} SCOP: a.39.1.7
Probab=25.95 E-value=1.3e+02 Score=19.84 Aligned_cols=29 Identities=7% Similarity=-0.047 Sum_probs=24.3
Q ss_pred HHHHHHHhcCCCccCccCHHHHhhhcCCC
Q 044287 78 EASEKCRKERRKTVNGDDICWALGTLGFD 106 (188)
Q Consensus 78 eAne~a~~~kRKTIt~eDVl~AL~~LGF~ 106 (188)
.+......++.-.|+.+++..+|..+|+.
T Consensus 28 ~~F~~~D~d~~G~i~~~el~~~l~~~g~~ 56 (105)
T 1wlz_A 28 QEFENFDTMKTNTISREEFRAICNRRVQI 56 (105)
T ss_dssp HHHHHHCTTCSSCBCHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCCCCcCcHHHHHHHHHHhCCC
Confidence 46666777888899999999999999875
No 107
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=25.65 E-value=2.3e+02 Score=23.85 Aligned_cols=67 Identities=9% Similarity=0.111 Sum_probs=43.8
Q ss_pred hHHHHHHhhhCCC-CccccHHHHHHHHHHHHH----HHHHHHHHHHHHHHhc------------CCCccCccCHHHHhhh
Q 044287 40 ANVGRIMKQILPA-NAKISKEAKETMQECVSE----FISFITSEASEKCRKE------------RRKTVNGDDICWALGT 102 (188)
Q Consensus 40 A~I~RImK~~LP~-~~rISkDA~~al~eca~e----FI~~LtseAne~a~~~------------kRKTIt~eDVl~AL~~ 102 (188)
.....|++..+.. ...++.++...|.+.+.- -|..|...|...+..+ ....|+.+|+..||+.
T Consensus 285 ~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~~~~~~~~~~~~~i~~~d~~~al~~ 364 (389)
T 3vfd_A 285 ETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESLKK 364 (389)
T ss_dssp HHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC---CCSSSCCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhhhhhccchhhcCCcCHHHHHHHHHH
Confidence 3445555555432 356888888887776543 4556666676666654 4567999999999987
Q ss_pred cCCC
Q 044287 103 LGFD 106 (188)
Q Consensus 103 LGF~ 106 (188)
+.-.
T Consensus 365 ~~~s 368 (389)
T 3vfd_A 365 IKRS 368 (389)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 6543
No 108
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=25.54 E-value=1.2e+02 Score=20.99 Aligned_cols=54 Identities=11% Similarity=0.205 Sum_probs=36.1
Q ss_pred CCCCCCCCCCCCccccccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHH
Q 044287 19 AGAGASSDDGGIKEQERLLPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFIT 76 (188)
Q Consensus 19 ~~~~~~~~~~~~~~~d~~LPkA~I~RImK~~LP~~~rISkDA~~al~eca~eFI~~Lt 76 (188)
+|..++++.+-.+..++.---+.+++++=. +|.+-++| +..+.+.|..||.+|.
T Consensus 13 ~~~~~a~erER~Rm~~lN~aF~~LR~~VP~-~p~~kKLS---KiEtLr~Ai~YI~~Lq 66 (68)
T 2lfh_A 13 GGKGPAAEEPLSLLDDMNHCYSRLRELVPG-VPRGTQLS---QVEILQRVIDYILDLQ 66 (68)
T ss_dssp CCCCCCBCCCSCSSSHHHHHHHHHHHHCCC-CCTTCCCC---HHHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCcc---HHHHHHHHHHHHHHHH
Confidence 456677777777777766555666665433 34566787 4667778888888875
No 109
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria, structural genomics consortium, SGC, transfe; 2.10A {Plasmodium falciparum}
Probab=25.48 E-value=1.9e+02 Score=20.90 Aligned_cols=29 Identities=17% Similarity=0.235 Sum_probs=24.2
Q ss_pred HHHHHHHhcCCCccCccCHHHHhhhcCCC
Q 044287 78 EASEKCRKERRKTVNGDDICWALGTLGFD 106 (188)
Q Consensus 78 eAne~a~~~kRKTIt~eDVl~AL~~LGF~ 106 (188)
.+......++--+|+.+++..+|..+|+.
T Consensus 43 ~~F~~~D~d~~G~i~~~El~~~l~~~g~~ 71 (180)
T 3mse_B 43 ELFYKLDTNHNGSLSHREIYTVLASVGIK 71 (180)
T ss_dssp HHHHHHCTTCSSSEEHHHHHHHHHHTTCC
T ss_pred HHHHHhCCCCCCcCCHHHHHHHHHHcCCC
Confidence 35556667778899999999999999986
No 110
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata} SCOP: a.39.1.4
Probab=25.02 E-value=56 Score=21.72 Aligned_cols=78 Identities=10% Similarity=0.067 Sum_probs=43.9
Q ss_pred CchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccCHHHHhhhc---CCCcchHHHH
Q 044287 37 LPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDICWALGTL---GFDDYAGPIR 113 (188)
Q Consensus 37 LPkA~I~RImK~~LP~~~rISkDA~~al~eca~eFI~~LtseAne~a~~~kRKTIt~eDVl~AL~~L---GF~dyi~~lk 113 (188)
++...|..|++..=. +-.|+-+--..+......- ..-...+......++.-.|+.+++..+|..+ |..--...+.
T Consensus 6 ~s~~ei~~~~~~~d~-~g~i~~~eF~~~~~~~~~~-~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~g~~~~~~~~~ 83 (109)
T 5pal_A 6 LKADDINKAISAFKD-PGTFDYKRFFHLVGLKGKT-DAQVKEVFEILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTETK 83 (109)
T ss_dssp SCHHHHHHHHHHTCS-TTCCCHHHHHHHHTCTTCC-HHHHHHHHHHHCTTCSSEECHHHHHTHHHHHCTTCCCCCHHHHH
T ss_pred CCHHHHHHHHHHhCC-CCcCcHHHHHHHHhhccCc-HHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 666777888877643 3445533211111000000 0012346667777888899999999999988 6654444444
Q ss_pred HHH
Q 044287 114 RYL 116 (188)
Q Consensus 114 ~~L 116 (188)
..+
T Consensus 84 ~~~ 86 (109)
T 5pal_A 84 ALL 86 (109)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 111
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=24.96 E-value=60 Score=23.45 Aligned_cols=35 Identities=9% Similarity=0.066 Sum_probs=26.6
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccCHHHHhh
Q 044287 55 KISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDICWALG 101 (188)
Q Consensus 55 rISkDA~~al~eca~eFI~~LtseAne~a~~~kRKTIt~eDVl~AL~ 101 (188)
.+|..+..+|.. |...+...+...|+.+|++.||=
T Consensus 82 ~~s~~~~~vl~~------------A~~~a~~~~~~~i~~ehlLlall 116 (148)
T 1khy_A 82 QPSQDLVRVLNL------------CDKLAQKRGDNFISSELFVLAAL 116 (148)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHHTCSSBCHHHHHHHHH
T ss_pred CcCHHHHHHHHH------------HHHHHHHcCCCeecHHHHHHHHH
Confidence 456665555544 67778878889999999999986
No 112
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A
Probab=24.53 E-value=1.7e+02 Score=19.75 Aligned_cols=40 Identities=15% Similarity=0.169 Sum_probs=27.7
Q ss_pred HHHHHHHhcCCCccCccCHHHHhhhcCCCcchHHHHHHHH
Q 044287 78 EASEKCRKERRKTVNGDDICWALGTLGFDDYAGPIRRYLH 117 (188)
Q Consensus 78 eAne~a~~~kRKTIt~eDVl~AL~~LGF~dyi~~lk~~L~ 117 (188)
.+......++.-.|+.+++..+|..+|..-=...+...+.
T Consensus 88 ~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 127 (147)
T 4ds7_A 88 EAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDEMLR 127 (147)
T ss_dssp HHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHhCCCCCCeECHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3555666777888999999999999986533344444433
No 113
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=23.97 E-value=61 Score=26.02 Aligned_cols=70 Identities=11% Similarity=0.117 Sum_probs=45.6
Q ss_pred CchhHHHHHHhhhCC-CCccccHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCccCccCHHHHhhhcCCC
Q 044287 37 LPIANVGRIMKQILP-ANAKISKEAKETMQECVS---EFISFITSEASEKCRKERRKTVNGDDICWALGTLGFD 106 (188)
Q Consensus 37 LPkA~I~RImK~~LP-~~~rISkDA~~al~eca~---eFI~~LtseAne~a~~~kRKTIt~eDVl~AL~~LGF~ 106 (188)
++...+..+++..+. .+..++.++...|.+.+. -.+..+...+...|...+...|+.+|+..++..++.+
T Consensus 168 ~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~ 241 (324)
T 1hqc_A 168 YTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALGLD 241 (324)
T ss_dssp CCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccc
Confidence 455566666665542 145799999988887752 2233333444444555567789999999999877654
No 114
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=23.72 E-value=77 Score=24.99 Aligned_cols=52 Identities=10% Similarity=0.118 Sum_probs=31.6
Q ss_pred ccccHHHHHHHHHHHHH------------HHHHHHHH----HHHHHHhcCCC-ccCccCHHHHhhhcCC
Q 044287 54 AKISKEAKETMQECVSE------------FISFITSE----ASEKCRKERRK-TVNGDDICWALGTLGF 105 (188)
Q Consensus 54 ~rISkDA~~al~eca~e------------FI~~Ltse----Ane~a~~~kRK-TIt~eDVl~AL~~LGF 105 (188)
..++.++.+.|.+.+.. ....|-.. +...+...+.. +|+.+||..|+..+..
T Consensus 233 ~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~~~ 301 (310)
T 1ofh_A 233 IAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEVVE 301 (310)
T ss_dssp EEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCSSSS
T ss_pred eccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHhhhh
Confidence 47999999999887632 22222221 11222233332 5999999999987653
No 115
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=23.64 E-value=1.3e+02 Score=21.82 Aligned_cols=53 Identities=17% Similarity=0.223 Sum_probs=38.4
Q ss_pred CCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccCHHHHhhhcCCCcchHHHHHH
Q 044287 51 PANAKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDICWALGTLGFDDYAGPIRRY 115 (188)
Q Consensus 51 P~~~rISkDA~~al~eca~eFI~~LtseAne~a~~~kRKTIt~eDVl~AL~~LGF~dyi~~lk~~ 115 (188)
|..+++|.+-...|.+ |......++-=+|+.+++..+|+.||+.--...+...
T Consensus 5 ~~~~~Lt~~qi~elk~------------~F~~~D~d~dG~I~~~El~~~l~~lg~~~~~~~~~~~ 57 (153)
T 3i5g_B 5 PRRVKLSQRQMQELKE------------AFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAM 57 (153)
T ss_dssp --CTTCCHHHHHHHHH------------HHHHHCCSTTSCCCHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred ccccCCCHHHHHHHHH------------HHHHHCCCCCCeEcHHHHHHHHHHcCCCccHHHHHHH
Confidence 5566788877776654 5556677777889999999999999987655555444
No 116
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5
Probab=23.12 E-value=86 Score=18.51 Aligned_cols=29 Identities=14% Similarity=-0.054 Sum_probs=21.2
Q ss_pred HHHHHHhcCCCccCccCHHHHhhhcCCCc
Q 044287 79 ASEKCRKERRKTVNGDDICWALGTLGFDD 107 (188)
Q Consensus 79 Ane~a~~~kRKTIt~eDVl~AL~~LGF~d 107 (188)
+......++.-.|+.+++..+|..+|..-
T Consensus 6 ~F~~~D~d~~G~i~~~el~~~l~~~~~~~ 34 (67)
T 1tiz_A 6 VFEKFDKNKDGKLSLDEFREVALAFSPYF 34 (67)
T ss_dssp HHHHHCTTSSSCEEHHHHHHHHHHTCTTS
T ss_pred HHHHHCCCCCCcCcHHHHHHHHHHhCCCC
Confidence 44455566677788999999998888653
No 117
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=22.92 E-value=1.2e+02 Score=23.97 Aligned_cols=60 Identities=10% Similarity=0.175 Sum_probs=38.5
Q ss_pred ccccHHHHHHHHHHHHHH----HHHHHHHHHHHHHhcC------------CCccCccCHHHHhhhcCCCcchHHHH
Q 044287 54 AKISKEAKETMQECVSEF----ISFITSEASEKCRKER------------RKTVNGDDICWALGTLGFDDYAGPIR 113 (188)
Q Consensus 54 ~rISkDA~~al~eca~eF----I~~LtseAne~a~~~k------------RKTIt~eDVl~AL~~LGF~dyi~~lk 113 (188)
..++.++...|.+.+.-| +..|...|...|..+. ...|+.+|+..|++.+.-.-....+.
T Consensus 207 ~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~s~~~~~~~ 282 (297)
T 3b9p_A 207 SPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLN 282 (297)
T ss_dssp CCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC--------CCCCCCCCHHHHHHHTTSCCCSSCHHHHH
T ss_pred CCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCcCHHHHHHHHHHcCCCCCHHHHH
Confidence 347788777777665433 3455556655555543 35799999999999876554443333
No 118
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=22.83 E-value=50 Score=25.86 Aligned_cols=58 Identities=12% Similarity=0.141 Sum_probs=34.3
Q ss_pred HHHHhhhCCCCccccHHH-HHHHHHHHHH----HHHHHHHHHHHHHHhcCCCccCccCHHHHhh
Q 044287 43 GRIMKQILPANAKISKEA-KETMQECVSE----FISFITSEASEKCRKERRKTVNGDDICWALG 101 (188)
Q Consensus 43 ~RImK~~LP~~~rISkDA-~~al~eca~e----FI~~LtseAne~a~~~kRKTIt~eDVl~AL~ 101 (188)
..|++..+. ...++.++ ...|.+.+.- -|..+...|...|...++.+|+.+|+..|++
T Consensus 192 ~~il~~~~~-~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~dl~~a~~ 254 (254)
T 1ixz_A 192 EQILRIHAR-GKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAAS 254 (254)
T ss_dssp HHHHHHHHT-TSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHTC
T ss_pred HHHHHHHHc-CCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHhC
Confidence 345554332 33444443 3444443332 2344555677778888888999999998873
No 119
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A
Probab=21.42 E-value=1.8e+02 Score=19.09 Aligned_cols=27 Identities=4% Similarity=0.191 Sum_probs=22.7
Q ss_pred HHHHHHHhcCCCccCccCHHHHhhhcC
Q 044287 78 EASEKCRKERRKTVNGDDICWALGTLG 104 (188)
Q Consensus 78 eAne~a~~~kRKTIt~eDVl~AL~~LG 104 (188)
.+......++.-+|+.+++..+|..++
T Consensus 46 ~~F~~~D~d~~G~I~~~el~~~l~~~~ 72 (110)
T 1pva_A 46 KVFKAIDADASGFIEEEELKFVLKSFA 72 (110)
T ss_dssp HHHHHHCTTCSSSBCHHHHHTGGGGTC
T ss_pred HHHHHhCCCCCCcCcHHHHHHHHHHHh
Confidence 466677778888999999999999993
No 120
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=21.17 E-value=1.1e+02 Score=27.07 Aligned_cols=67 Identities=9% Similarity=0.245 Sum_probs=44.1
Q ss_pred CchhHHHHHHhhhCC--------CCccccHHHHHHHHHHHH----HHHHHHHHHHHHHHHhc--CCCccCccCHHHHhhh
Q 044287 37 LPIANVGRIMKQILP--------ANAKISKEAKETMQECVS----EFISFITSEASEKCRKE--RRKTVNGDDICWALGT 102 (188)
Q Consensus 37 LPkA~I~RImK~~LP--------~~~rISkDA~~al~eca~----eFI~~LtseAne~a~~~--kRKTIt~eDVl~AL~~ 102 (188)
++...+..|++..+. ....|+.++.+.|.+.+. ..++.| ..|...|... ++.+|+.+||..++..
T Consensus 165 l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~L-e~a~~~a~~~~~~~~~It~e~v~~~l~~ 243 (447)
T 3pvs_A 165 LSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTL-EMMADMAEVDDSGKRVLKPELLTEIAGE 243 (447)
T ss_dssp CCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHH-HHHHHHSCBCTTSCEECCHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHH-HHHHHhcccccCCCCccCHHHHHHHHhh
Confidence 566667777766653 246799999999988753 222222 2333444322 5678999999999987
Q ss_pred cC
Q 044287 103 LG 104 (188)
Q Consensus 103 LG 104 (188)
..
T Consensus 244 ~~ 245 (447)
T 3pvs_A 244 RS 245 (447)
T ss_dssp CC
T ss_pred hh
Confidence 53
No 121
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=21.14 E-value=57 Score=26.11 Aligned_cols=59 Identities=12% Similarity=0.128 Sum_probs=34.8
Q ss_pred HHHHHhhhCCCCccccHHH-HHHHHHHHHH----HHHHHHHHHHHHHHhcCCCccCccCHHHHhh
Q 044287 42 VGRIMKQILPANAKISKEA-KETMQECVSE----FISFITSEASEKCRKERRKTVNGDDICWALG 101 (188)
Q Consensus 42 I~RImK~~LP~~~rISkDA-~~al~eca~e----FI~~LtseAne~a~~~kRKTIt~eDVl~AL~ 101 (188)
...|++..+. ...++.++ ...|.....- -|..+...|...|...++.+|+.+||..|++
T Consensus 215 r~~il~~~~~-~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~I~~~dl~~a~~ 278 (278)
T 1iy2_A 215 REQILRIHAR-GKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAAS 278 (278)
T ss_dssp HHHHHHHHHT-TSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCCSBCHHHHHHHTC
T ss_pred HHHHHHHHHc-cCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHhC
Confidence 3445554432 33444444 3444433322 2334555677778888888999999998873
No 122
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=20.12 E-value=1.7e+02 Score=20.46 Aligned_cols=40 Identities=13% Similarity=0.145 Sum_probs=30.2
Q ss_pred HHHHHHHHhcCCCccCccCHHHHhhhcCCCcchHHHHHHH
Q 044287 77 SEASEKCRKERRKTVNGDDICWALGTLGFDDYAGPIRRYL 116 (188)
Q Consensus 77 seAne~a~~~kRKTIt~eDVl~AL~~LGF~dyi~~lk~~L 116 (188)
..|......++--+|+.+++..+|..+|..--...+...+
T Consensus 86 ~~aF~~~D~d~~G~I~~~El~~~l~~~g~~~~~~e~~~l~ 125 (148)
T 2lmt_A 86 REAFKIFDRDGDGFISPAELRFVMINLGEKVTDEEIDEMI 125 (148)
T ss_dssp HHHHHHHHSSCSSEECHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHCCCCcCcCcHHHHHHHHHHcCccccHHHHHHHH
Confidence 3567777888888999999999999998765555555443
Done!