BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044290
         (80 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9IA02|FZD9_CHICK Frizzled-9 (Fragment) OS=Gallus gallus GN=FZD9 PE=2 SV=1
          Length = 392

 Score = 29.3 bits (64), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 7   MLKLSVLSLLSNLNSGLWPESSKGLKMFPPTCNR 40
           MLK+  +SL+  + SG+W  SSK L+ +   CNR
Sbjct: 315 MLKI-FMSLVVGITSGVWVWSSKTLQTWQSLCNR 347


>sp|Q63514|C4BPA_RAT C4b-binding protein alpha chain OS=Rattus norvegicus GN=C4bpa PE=2
           SV=1
          Length = 558

 Score = 29.3 bits (64), Expect = 7.5,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 9/48 (18%)

Query: 11  SVLSLLSNLNSGLWPESSKGLKMFPPTCNRIECPSFETVH--VGNGFE 56
           S+   + N   G+W  S       PPTC RI CP  + +H  + +GF+
Sbjct: 179 SITCTVVNKTVGVWSPS-------PPTCERIICPWPKVLHGTINSGFK 219


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.132    0.402 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,283,926
Number of Sequences: 539616
Number of extensions: 869269
Number of successful extensions: 1429
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1428
Number of HSP's gapped (non-prelim): 4
length of query: 80
length of database: 191,569,459
effective HSP length: 51
effective length of query: 29
effective length of database: 164,049,043
effective search space: 4757422247
effective search space used: 4757422247
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)