Query 044290
Match_columns 80
No_of_seqs 101 out of 142
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 13:11:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044290.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044290hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04832 SOUL: SOUL heme-bindi 99.2 1.1E-11 2.5E-16 86.4 3.0 39 40-79 1-39 (176)
2 PF10731 Anophelin: Thrombin i 50.9 17 0.00036 23.0 2.3 34 1-47 1-34 (65)
3 PF07803 GSG-1: GSG1-like prot 50.7 26 0.00057 24.4 3.5 19 51-69 76-95 (118)
4 PF14260 zf-C4pol: C4-type zin 36.9 24 0.00052 21.1 1.4 17 30-46 53-69 (73)
5 PRK07868 acyl-CoA synthetase; 29.6 59 0.0013 28.4 3.1 24 40-63 34-57 (994)
6 PF03366 YEATS: YEATS family; 25.4 86 0.0019 19.9 2.6 20 40-59 37-57 (84)
7 TIGR01711 gspJ general secreti 23.9 80 0.0017 22.5 2.5 24 45-68 139-162 (192)
8 PF14783 BBS2_Mid: Ciliary BBS 23.4 78 0.0017 21.5 2.3 21 47-67 17-37 (111)
9 cd01061 RNase_T2_euk Ribonucle 21.8 68 0.0015 22.4 1.8 18 22-41 34-51 (195)
10 PF00735 Septin: Septin; Inte 21.5 73 0.0016 24.1 2.0 31 42-76 199-237 (281)
11 cd03067 PDI_b_PDIR_N PDIb fami 20.4 24 0.00053 24.4 -0.7 30 37-66 57-92 (112)
No 1
>PF04832 SOUL: SOUL heme-binding protein; InterPro: IPR006917 This family represents a group of putative haem-binding proteins []. It includes archaeal and bacterial homologues.; PDB: 2HVA_A 2GOV_A 4A1M_A 3R85_E 2YC9_A 3R8K_B 3R8J_B.
Probab=99.19 E-value=1.1e-11 Score=86.40 Aligned_cols=39 Identities=44% Similarity=0.894 Sum_probs=30.7
Q ss_pred CcCCCCeEEEeecCceeEEeeCCCCeEEecccccCcchhc
Q 044290 40 RIECPSFETVHVGNGFEIRRYDSSMWMSTSPIQDISLVEA 79 (80)
Q Consensus 40 ~~EcP~Y~vv~~~~dYEvR~Y~~skWVST~~V~~~s~~~A 79 (80)
++|||+|+|+++.++||||+|++++||+|. +.+.++++|
T Consensus 1 ~~E~P~Y~v~~~~~~~EiR~Y~~~~w~~t~-~~~~~~~~a 39 (176)
T PF04832_consen 1 DIECPPYEVLKKGDDYEIRRYPPAKWASTT-VSGCSFEEA 39 (176)
T ss_dssp --BS-SEEEECCCSSCEEEEE--CEEEEEE-EECS-HHHH
T ss_pred CCcCCCeEEEEeCCCEEEEEECCceEEEEE-ecCCChhHH
Confidence 469999999999999999999999999997 888877765
No 2
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=50.90 E-value=17 Score=23.03 Aligned_cols=34 Identities=24% Similarity=0.342 Sum_probs=18.6
Q ss_pred CcchhhHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcCCcCCCCeE
Q 044290 1 MAAGLSMLKLSVLSLLSNLNSGLWPESSKGLKMFPPTCNRIECPSFE 47 (80)
Q Consensus 1 ~~~~~~~~~ls~l~~~~~~~~~~~~~~~~g~~~~P~fC~~~EcP~Y~ 47 (80)
||..+ |.++|||+..++.- |+ .|..-+| |-|.|+
T Consensus 1 MA~Kl--~vialLC~aLva~v-------Q~---APQYa~G-eeP~YD 34 (65)
T PF10731_consen 1 MASKL--IVIALLCVALVAIV-------QS---APQYAPG-EEPSYD 34 (65)
T ss_pred Ccchh--hHHHHHHHHHHHHH-------hc---CcccCCC-CCCCcC
Confidence 56655 66677555433221 11 4666665 678874
No 3
>PF07803 GSG-1: GSG1-like protein; InterPro: IPR012478 This family contains sequences bearing similarity to a region of GSG1 (Q9Z1H7 from SWISSPROT), a protein specifically expressed in testicular germ cells []. It is possible that over expression of the human homologue may be involved in tumourigenesis of human testicular germ cell tumours []. The region in question has four highly conserved cysteine residues.
Probab=50.65 E-value=26 Score=24.43 Aligned_cols=19 Identities=26% Similarity=0.805 Sum_probs=15.8
Q ss_pred ecCc-eeEEeeCCCCeEEec
Q 044290 51 VGNG-FEIRRYDSSMWMSTS 69 (80)
Q Consensus 51 ~~~d-YEvR~Y~~skWVST~ 69 (80)
.++| |-.|.+..+.|.|-+
T Consensus 76 TGDDkF~fr~FHtG~W~SCE 95 (118)
T PF07803_consen 76 TGDDKFIFRYFHTGIWLSCE 95 (118)
T ss_pred cCCceeehhhhhcchhhhhh
Confidence 3445 999999999999976
No 4
>PF14260 zf-C4pol: C4-type zinc-finger of DNA polymerase delta
Probab=36.94 E-value=24 Score=21.12 Aligned_cols=17 Identities=29% Similarity=0.747 Sum_probs=13.6
Q ss_pred CCCCCCCCcCCcCCCCe
Q 044290 30 GLKMFPPTCNRIECPSF 46 (80)
Q Consensus 30 g~~~~P~fC~~~EcP~Y 46 (80)
|....+.-|...|||.|
T Consensus 53 ~~~~~~~~C~s~DCpV~ 69 (73)
T PF14260_consen 53 GSLHEEIECDSLDCPVF 69 (73)
T ss_pred CcCCCCCcccCCCCCcc
Confidence 44446888999999998
No 5
>PRK07868 acyl-CoA synthetase; Validated
Probab=29.58 E-value=59 Score=28.35 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=20.5
Q ss_pred CcCCCCeEEEeecCceeEEeeCCC
Q 044290 40 RIECPSFETVHVGNGFEIRRYDSS 63 (80)
Q Consensus 40 ~~EcP~Y~vv~~~~dYEvR~Y~~s 63 (80)
+..+-+++||.+++-+|+|+|.+.
T Consensus 34 ~~~~tp~~vv~~~~~~~l~~y~~~ 57 (994)
T PRK07868 34 GSVPSPFQIVESVPMYRLRRYFPP 57 (994)
T ss_pred cCCCCCCcEEEEcCcEEEEEeCCC
Confidence 345778999999999999999764
No 6
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=25.42 E-value=86 Score=19.91 Aligned_cols=20 Identities=35% Similarity=0.513 Sum_probs=14.0
Q ss_pred CcCCCCeEEEeecC-ceeEEe
Q 044290 40 RIECPSFETVHVGN-GFEIRR 59 (80)
Q Consensus 40 ~~EcP~Y~vv~~~~-dYEvR~ 59 (80)
-++.|+|+|.+.+= +|+++.
T Consensus 37 ~v~~pPFevte~GWGeF~i~I 57 (84)
T PF03366_consen 37 VVTKPPFEVTETGWGEFEIPI 57 (84)
T ss_dssp ECSSTTEEEEEEESS--EEEE
T ss_pred EecCCCCEEEEeEeccEEEEE
Confidence 34899999999974 577763
No 7
>TIGR01711 gspJ general secretion pathway protein J. Both GspI and GspJ are proteins of the type II secretion pathway, or main terminal branch of the general secretion pathway. This pathway carries proteins across the outer membrane. Note that proteins of type II secretion are cryptic in E. coli K-12 - present but not yet demonstrated to act on any target.
Probab=23.91 E-value=80 Score=22.48 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=19.9
Q ss_pred CeEEEeecCceeEEeeCCCCeEEe
Q 044290 45 SFETVHVGNGFEIRRYDSSMWMST 68 (80)
Q Consensus 45 ~Y~vv~~~~dYEvR~Y~~skWVST 68 (80)
...+++.-++|++|.|.++.|...
T Consensus 139 ~~~LL~~V~~~~~r~~~~~~W~~~ 162 (192)
T TIGR01711 139 IQPVLDGVTALSWRFYDKGNWQGE 162 (192)
T ss_pred eeehhcCccEEEEEEECCCccccc
Confidence 456777788999999999999864
No 8
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=23.40 E-value=78 Score=21.53 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=16.0
Q ss_pred EEEeecCceeEEeeCCCCeEE
Q 044290 47 ETVHVGNGFEIRRYDSSMWMS 67 (80)
Q Consensus 47 ~vv~~~~dYEvR~Y~~skWVS 67 (80)
+++--.+|||||.|+...=+.
T Consensus 17 eLlvGs~D~~IRvf~~~e~~~ 37 (111)
T PF14783_consen 17 ELLVGSDDFEIRVFKGDEIVA 37 (111)
T ss_pred eEEEecCCcEEEEEeCCcEEE
Confidence 466668899999999875544
No 9
>cd01061 RNase_T2_euk Ribonuclease T2 (RNase T2) is a widespread family of secreted RNases found in every organism examined thus far. This family includes RNase Rh, RNase MC1, RNase LE, and self-incompatibility RNases (S-RNases). Plant T2 RNases are expressed during leaf senescence in order to scavenge phosphate from ribonucleotides. They are also expressed in response to wounding or pathogen invasion. S-RNases are thought to prevent self-fertilization by acting as selective cytotoxins of "self" pollen. Generally, RNases have two distinct binding sites: the primary site (B1 site) and the subsite (B2 site), for nucleotides located at the 5'- and 3'- terminal ends of the sessil bond, respectively. This CD includes the eukaryotic RNase T2 family members.
Probab=21.81 E-value=68 Score=22.42 Aligned_cols=18 Identities=33% Similarity=1.045 Sum_probs=13.4
Q ss_pred CCCCCCCCCCCCCCCCcCCc
Q 044290 22 GLWPESSKGLKMFPPTCNRI 41 (80)
Q Consensus 22 ~~~~~~~~g~~~~P~fC~~~ 41 (80)
||||+... +..|.+|++.
T Consensus 34 GLWP~~~~--g~~p~~C~~~ 51 (195)
T cd01061 34 GLWPDNCS--GTYPQFCDSS 51 (195)
T ss_pred ccCCCCCC--CCCCCCCCCc
Confidence 67998665 3469999864
No 10
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=21.47 E-value=73 Score=24.07 Aligned_cols=31 Identities=16% Similarity=0.395 Sum_probs=18.0
Q ss_pred CCCCeEEEeecCceeE--------EeeCCCCeEEecccccCcc
Q 044290 42 ECPSFETVHVGNGFEI--------RRYDSSMWMSTSPIQDISL 76 (80)
Q Consensus 42 EcP~Y~vv~~~~dYEv--------R~Y~~skWVST~~V~~~s~ 76 (80)
++++|-|+.+.+.++. |+|. |=..+ |.+..+
T Consensus 199 ~~~PFavi~s~~~~~~~~g~~~~gR~Yp---WG~ve-v~n~~h 237 (281)
T PF00735_consen 199 SMLPFAVIGSNTEIENSNGKRVRGRKYP---WGTVE-VENPEH 237 (281)
T ss_dssp HC-SEEE---SSEEEE-SSSEEEEEEET---TEEEE-TT-TTT
T ss_pred cceeeEEEecceeeeccCCcEEeeeecC---Ccccc-cccccc
Confidence 5899999998887777 8886 44444 555443
No 11
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=20.39 E-value=24 Score=24.42 Aligned_cols=30 Identities=17% Similarity=0.431 Sum_probs=21.7
Q ss_pred CcCCcC----CCCeEEE--eecCceeEEeeCCCCeE
Q 044290 37 TCNRIE----CPSFETV--HVGNGFEIRRYDSSMWM 66 (80)
Q Consensus 37 fC~~~E----cP~Y~vv--~~~~dYEvR~Y~~skWV 66 (80)
-|++.| |-+..|. .+-+.||+++|..|.|=
T Consensus 57 dCgd~e~kKLCKKlKv~~~~kp~~~~LkHYKdG~fH 92 (112)
T cd03067 57 DCGDSESRKLCKKLKVDPSSKPKPVELKHYKDGDFH 92 (112)
T ss_pred ecCChHHHHHHHHHccCCCCCCCcchhhcccCCCcc
Confidence 466543 7777777 34567999999999874
Done!