Query 044290
Match_columns 80
No_of_seqs 101 out of 142
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 23:10:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044290.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044290hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gov_A P22HBP, heme-binding pr 99.2 9.2E-12 3.1E-16 88.4 4.4 43 36-79 13-59 (195)
2 4b0y_A Heme-binding protein 2; 99.2 7.1E-12 2.4E-16 91.7 1.8 45 34-79 35-83 (227)
3 3r8j_A Heme-binding protein 2; 99.1 2.6E-11 8.8E-16 87.7 1.9 42 37-79 19-64 (212)
4 3ci0_J Pseudopilin GSPJ; gener 43.6 21 0.00071 23.7 3.1 25 43-68 105-130 (163)
5 1ro3_A Disintegrin echistatin; 28.2 40 0.0014 18.7 2.2 17 29-46 24-42 (49)
6 2ret_B EPSJ; general secretion 22.6 46 0.0016 22.1 2.0 21 48-68 118-138 (175)
7 1vqy_A Hypothetical protein AG 19.9 39 0.0013 21.0 1.2 8 54-61 14-21 (116)
8 1vqs_A Hypothetical protein AG 19.9 39 0.0013 21.0 1.2 8 54-61 14-21 (116)
9 4fei_A Heat shock protein-rela 18.5 1.2E+02 0.004 18.1 3.1 21 43-63 6-26 (102)
10 4g7n_A Serine/threonine-protei 17.7 73 0.0025 23.2 2.3 23 46-68 134-156 (225)
No 1
>2gov_A P22HBP, heme-binding protein 1; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; NMR {Mus musculus} SCOP: d.60.1.4 PDB: 4a1m_A 2hva_A
Probab=99.21 E-value=9.2e-12 Score=88.43 Aligned_cols=43 Identities=16% Similarity=0.313 Sum_probs=39.5
Q ss_pred CCcCCcCCCCeEEEeecCc----eeEEeeCCCCeEEecccccCcchhc
Q 044290 36 PTCNRIECPSFETVHVGNG----FEIRRYDSSMWMSTSPIQDISLVEA 79 (80)
Q Consensus 36 ~fC~~~EcP~Y~vv~~~~d----YEvR~Y~~skWVST~~V~~~s~~~A 79 (80)
..|.++|||+|+|+++.++ ||||+|++.+||+|+ +++.++++|
T Consensus 13 ~~~~~~E~P~Y~Vl~~~~~~~~~yEiR~Y~~~~wa~t~-~~~~~~~~A 59 (195)
T 2gov_A 13 SLFGSVETWPWQVLSTGGKEDVSYEERACEGGKFATVE-VTDKPVDEA 59 (195)
T ss_dssp CCCCSCCSCCCEEEEECCCSSSCEEEEECCCCEEEEEE-EESSCHHHH
T ss_pred cccCCCCCCCeEEEEecCCCCCcEEEEEeCCeEEEEEE-ecCCChhHH
Confidence 5688999999999999887 999999999999997 999988876
No 2
>4b0y_A Heme-binding protein 2; apoptosis; 3.50A {Homo sapiens}
Probab=99.16 E-value=7.1e-12 Score=91.73 Aligned_cols=45 Identities=24% Similarity=0.500 Sum_probs=35.2
Q ss_pred CCCCcCCcCCCCeEEEee----cCceeEEeeCCCCeEEecccccCcchhc
Q 044290 34 FPPTCNRIECPSFETVHV----GNGFEIRRYDSSMWMSTSPIQDISLVEA 79 (80)
Q Consensus 34 ~P~fC~~~EcP~Y~vv~~----~~dYEvR~Y~~skWVST~~V~~~s~~~A 79 (80)
.+..|+++|||+|+|+++ +++||||+|++.+||+|+ +++.++++|
T Consensus 35 ~~~~~~~~E~P~Y~vl~~~~~~~~~yEiR~Y~~~~wast~-v~~~~~~~A 83 (227)
T 4b0y_A 35 EDAAAQAVETPGWKAPEDAGPQPGSYEIRHYGPAKWVSTS-VESMDWDSA 83 (227)
T ss_dssp ------CCBCCCEECCC------CCSEEEEECCEEEEEEE-EEESCHHHH
T ss_pred cccccCCCCCCCeEEEEecccCCCCEEEEEcCCceEEEEE-EeCCCHHHH
Confidence 456788899999999999 789999999999999997 999998876
No 3
>3r8j_A Heme-binding protein 2; HEBP family, SOUL protein, apoptosis; 1.60A {Homo sapiens} PDB: 3r8k_A 2yc9_A 4ayz_A 4ayz_B 3r85_E
Probab=99.08 E-value=2.6e-11 Score=87.68 Aligned_cols=42 Identities=26% Similarity=0.570 Sum_probs=36.5
Q ss_pred CcCCcCCCCeEEEee----cCceeEEeeCCCCeEEecccccCcchhc
Q 044290 37 TCNRIECPSFETVHV----GNGFEIRRYDSSMWMSTSPIQDISLVEA 79 (80)
Q Consensus 37 fC~~~EcP~Y~vv~~----~~dYEvR~Y~~skWVST~~V~~~s~~~A 79 (80)
-+.++|||+|+|+++ +++||||+|++.+||+|+ +++.++++|
T Consensus 19 ~~~~~E~P~Y~vl~~~~~~~~~yEiR~Y~~~~wast~-v~~~~~~~A 64 (212)
T 3r8j_A 19 AAQAVETPGWKAPEDAGPQPGSYEIRHYGPAKWVSTS-VESMDWDSA 64 (212)
T ss_dssp ---CCBCCCEECCSSCCCCCTTCEEEEECCEEEEEEE-EEESCHHHH
T ss_pred hcCCCCCCCeEEEEecccCCCCEEEEEcCCceEEEEE-EeCCCHHHH
Confidence 344689999999999 789999999999999997 999998876
No 4
>3ci0_J Pseudopilin GSPJ; general secretory pathway, pseudopilus, type 4 pilin biogene methylation, protein transport; 2.20A {Escherichia coli} SCOP: d.24.1.5
Probab=43.65 E-value=21 Score=23.70 Aligned_cols=25 Identities=16% Similarity=0.589 Sum_probs=18.7
Q ss_pred CCCeE-EEeecCceeEEeeCCCCeEEe
Q 044290 43 CPSFE-TVHVGNGFEIRRYDSSMWMST 68 (80)
Q Consensus 43 cP~Y~-vv~~~~dYEvR~Y~~skWVST 68 (80)
-|.=+ +++. ++|++|.|.+++|...
T Consensus 105 ~p~~~~lL~~-~~~~~rf~~~~~W~~~ 130 (163)
T 3ci0_J 105 KPTMQKLIPA-DSLRLQFYDGTRWQES 130 (163)
T ss_dssp CCEEEEEEEC-SCEEEEEECSSCEESC
T ss_pred CCeeEEeeCC-CeEEEEEEcCCCCccC
Confidence 34433 5566 8999999999999753
No 5
>1ro3_A Disintegrin echistatin; no regular secondary structure, cell adhesion; NMR {Echis carinatus} SCOP: g.20.1.1 PDB: 2ech_A
Probab=28.24 E-value=40 Score=18.69 Aligned_cols=17 Identities=29% Similarity=0.614 Sum_probs=13.3
Q ss_pred CCCCCCCCCcCCc--CCCCe
Q 044290 29 KGLKMFPPTCNRI--ECPSF 46 (80)
Q Consensus 29 ~g~~~~P~fC~~~--EcP~Y 46 (80)
.+. ..|.+|+|. +||.-
T Consensus 24 ~~~-Dl~E~C~G~S~~CP~d 42 (49)
T 1ro3_A 24 RGD-DMDDYCNGKTCDCPRN 42 (49)
T ss_dssp TTS-CCCCCCCSSCSSSCCC
T ss_pred cCC-CCCcCcCCcCCCCcCC
Confidence 345 799999998 79963
No 6
>2ret_B EPSJ; general secretion pathway, cholera, pseudopilus, type 4 PILI biogenesis, methylation, protein transport; HET: MSE; 2.21A {Vibrio vulnificus} SCOP: d.24.1.5 PDB: 3cfi_B
Probab=22.63 E-value=46 Score=22.11 Aligned_cols=21 Identities=19% Similarity=0.496 Sum_probs=17.0
Q ss_pred EEeecCceeEEeeCCCCeEEe
Q 044290 48 TVHVGNGFEIRRYDSSMWMST 68 (80)
Q Consensus 48 vv~~~~dYEvR~Y~~skWVST 68 (80)
+++.-++|++|.|.+++|...
T Consensus 118 LL~~V~~~~~r~~~~~~W~~~ 138 (175)
T 2ret_B 118 LLSDVEELNVRFYDGKQWINE 138 (175)
T ss_dssp EESSEEEEEEEEECSSCEESC
T ss_pred hhcCccEEEEEEEcCCccccc
Confidence 455567999999999999764
No 7
>1vqy_A Hypothetical protein AGR_PAT_315; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.40A {Agrobacterium tumefaciens str} SCOP: d.58.4.13
Probab=19.92 E-value=39 Score=21.05 Aligned_cols=8 Identities=38% Similarity=0.264 Sum_probs=6.9
Q ss_pred ceeEEeeC
Q 044290 54 GFEIRRYD 61 (80)
Q Consensus 54 dYEvR~Y~ 61 (80)
-||+|+|.
T Consensus 14 ~yElRtY~ 21 (116)
T 1vqy_A 14 IVEERIYR 21 (116)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 49999995
No 8
>1vqs_A Hypothetical protein AGR_L_1239; ferredoxin-like fold, structural genomics, joint center for structural genomics, JCSG; HET: MSE SO4; 1.50A {Agrobacterium tumefaciens str} SCOP: d.58.4.13 PDB: 2ap6_A
Probab=19.89 E-value=39 Score=21.04 Aligned_cols=8 Identities=50% Similarity=0.812 Sum_probs=6.8
Q ss_pred ceeEEeeC
Q 044290 54 GFEIRRYD 61 (80)
Q Consensus 54 dYEvR~Y~ 61 (80)
=||+|.|.
T Consensus 14 ~yElR~Y~ 21 (116)
T 1vqs_A 14 FYEIRTYR 21 (116)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 49999995
No 9
>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans}
Probab=18.54 E-value=1.2e+02 Score=18.15 Aligned_cols=21 Identities=10% Similarity=0.121 Sum_probs=17.4
Q ss_pred CCCeEEEeecCceeEEeeCCC
Q 044290 43 CPSFETVHVGNGFEIRRYDSS 63 (80)
Q Consensus 43 cP~Y~vv~~~~dYEvR~Y~~s 63 (80)
.|.+++.+..+.|.++.-=|+
T Consensus 6 ~P~~di~e~~~~~~v~~~lPG 26 (102)
T 4fei_A 6 TPAADWRDAGTHLDLLLDVPG 26 (102)
T ss_dssp CCCEEEEEETTEEEEEEECTT
T ss_pred cCcEEEEEcCCEEEEEEECCC
Confidence 588999998888998877665
No 10
>4g7n_A Serine/threonine-protein kinase PLK4; POLO BOX, kinase targeting and regulation, asterless, centri transferase; 2.30A {Drosophila melanogaster}
Probab=17.73 E-value=73 Score=23.17 Aligned_cols=23 Identities=26% Similarity=0.405 Sum_probs=18.2
Q ss_pred eEEEeecCceeEEeeCCCCeEEe
Q 044290 46 FETVHVGNGFEIRRYDSSMWMST 68 (80)
Q Consensus 46 Y~vv~~~~dYEvR~Y~~skWVST 68 (80)
+.+.+++.|||+..|+++|=+.|
T Consensus 134 c~LMEN~~DfEv~Fy~G~ki~kt 156 (225)
T 4g7n_A 134 CQLMETMTDFEIRFYSGAKLLKT 156 (225)
T ss_dssp EEEETTSSCEEEEETTSCEEEEE
T ss_pred EEEecCCCCeEEEEcCCceEEEe
Confidence 45566666999999999996666
Done!