BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044292
(160 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P1M|A Chain A, Tir1-ask1 Complex Structure
pdb|2P1N|A Chain A, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1N|D Chain D, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1O|A Chain A, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1P|A Chain A, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1Q|A Chain A, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|3C6N|A Chain A, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3C6O|A Chain A, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|A Chain A, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3OGK|A Chain A, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|C Chain C, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|E Chain E, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|G Chain G, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|I Chain I, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|K Chain K, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|M Chain M, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|O Chain O, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGL|A Chain A, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|C Chain C, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|E Chain E, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|G Chain G, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|I Chain I, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|K Chain K, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|M Chain M, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|O Chain O, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGM|A Chain A, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|C Chain C, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|E Chain E, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|G Chain G, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|I Chain I, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|K Chain K, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|M Chain M, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|O Chain O, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
Length = 160
Score = 173 bits (438), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 90/153 (58%), Positives = 110/153 (71%), Gaps = 7/153 (4%)
Query: 15 LKSSDGETFEVEETVALQSQTIRHMVEDDCADSVIPLPNVTGTILSMVVEYCKKHVEXXX 74
LKSSDGE+FEVEE VAL+SQTI HMVEDDC D+ +PLPNVT IL+ V+EYCK+HVE
Sbjct: 8 LKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKRHVEAAA 67
Query: 75 X-------XXGGDNDVKNWDRDFVKVDQETXXXXXXXXXXXXIKDLLELTCQATADVIKD 127
D+D+K WD DF+K+DQ T IK+LL+LTCQ AD+IK
Sbjct: 68 SKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMIKG 127
Query: 128 KSPEEVRRIFHINNDFTPQEEQEIRRENQWAFE 160
K+PEE+R F+I NDFTP+EE+E+RRENQWAFE
Sbjct: 128 KTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160
>pdb|3L2O|A Chain A, Structure-Based Mechanism Of Dimerization-Dependent
Ubiquitination By The Scffbx4 Ubiquitin Ligase
Length = 149
Score = 128 bits (321), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/146 (45%), Positives = 94/146 (64%), Gaps = 3/146 (2%)
Query: 15 LKSSDGETFEVEETVALQSQTIRHMVEDDCADSVIPLPNVTGTILSMVVEYCKKHVEXXX 74
L+SSDGE FEV+ +A QS TI+ M+ED D V PLPNV IL V+++C H +
Sbjct: 6 LQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDPV-PLPNVNAAILKKVIQWCTHHKDDPG 64
Query: 75 XXXGGDNDVKNWDRDFVKVDQETXXXXXXXXXXXXIKDLLELTCQATADVIKDKSPEEVR 134
G +D+ WD++F+KVDQ T IK LL++TC+ A++IK K+PEE+R
Sbjct: 65 G--SGTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIR 122
Query: 135 RIFHINNDFTPQEEQEIRRENQWAFE 160
+ F+I NDFT +EE ++R+ENQW E
Sbjct: 123 KTFNIKNDFTEEEEAQVRKENQWCEE 148
>pdb|1FQV|B Chain B, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|D Chain D, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|F Chain F, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|H Chain H, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|J Chain J, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|L Chain L, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|N Chain N, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|P Chain P, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|2OVP|A Chain A, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|A Chain A, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|A Chain A, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 149
Score = 128 bits (321), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/146 (45%), Positives = 94/146 (64%), Gaps = 3/146 (2%)
Query: 15 LKSSDGETFEVEETVALQSQTIRHMVEDDCADSVIPLPNVTGTILSMVVEYCKKHVEXXX 74
L+SSDGE FEV+ +A QS TI+ M+ED D V PLPNV IL V+++C H +
Sbjct: 6 LQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDPV-PLPNVNAAILKKVIQWCTHHKDDPG 64
Query: 75 XXXGGDNDVKNWDRDFVKVDQETXXXXXXXXXXXXIKDLLELTCQATADVIKDKSPEEVR 134
G +D+ WD++F+KVDQ T IK LL++TC+ A++IK K+PEE+R
Sbjct: 65 G--SGTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIR 122
Query: 135 RIFHINNDFTPQEEQEIRRENQWAFE 160
+ F+I NDFT +EE ++R+ENQW E
Sbjct: 123 KTFNIKNDFTEEEEAQVRKENQWCEE 148
>pdb|1P22|B Chain B, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 145
Score = 124 bits (311), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 66/146 (45%), Positives = 93/146 (63%), Gaps = 7/146 (4%)
Query: 15 LKSSDGETFEVEETVALQSQTIRHMVEDDCADSVIPLPNVTGTILSMVVEYCKKHVEXXX 74
L+SSDGE FEV+ +A QS TI+ M+ED D V PLPNV IL V+++C H +
Sbjct: 6 LQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDPV-PLPNVNAAILKKVIQWCTHHKDDPP 64
Query: 75 XXXGGDNDVKNWDRDFVKVDQETXXXXXXXXXXXXIKDLLELTCQATADVIKDKSPEEVR 134
+D+ WD++F+KVDQ T IK LL++TC+ A++IK K+PEE+R
Sbjct: 65 ------DDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIR 118
Query: 135 RIFHINNDFTPQEEQEIRRENQWAFE 160
+ F+I NDFT +EE ++R+ENQW E
Sbjct: 119 KTFNIKNDFTEEEEAQVRKENQWCEE 144
>pdb|2ASS|A Chain A, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
pdb|2AST|A Chain A, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A P27
Peptide
Length = 159
Score = 121 bits (303), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/154 (42%), Positives = 94/154 (61%), Gaps = 11/154 (7%)
Query: 15 LKSSDGETFEVEETVALQSQTIRHMVED-----DCADSVIPLPNVTGTILSMVVEYCKKH 69
L+SSDGE FEV+ +A QS TI+ M+ED + D +PLPNV IL V+++C H
Sbjct: 5 LQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHH 64
Query: 70 VEXXXXXXGGDN------DVKNWDRDFVKVDQETXXXXXXXXXXXXIKDLLELTCQATAD 123
+ +N D+ WD++F+KVDQ T IK LL++TC+ A+
Sbjct: 65 KDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVAN 124
Query: 124 VIKDKSPEEVRRIFHINNDFTPQEEQEIRRENQW 157
+IK K+PEE+R+ F+I NDFT +EE ++R+ENQW
Sbjct: 125 MIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQW 158
>pdb|2E31|B Chain B, Structural Basis For Selection Of Glycosylated Substrate
By Scffbs1 Ubiquitin Ligase
pdb|2E32|B Chain B, Structural Basis For Selection Of Glycosylated Substrate
By Scffbs1 Ubiquitin Ligase
pdb|2E32|D Chain D, Structural Basis For Selection Of Glycosylated Substrate
By Scffbs1 Ubiquitin Ligase
Length = 166
Score = 121 bits (303), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 95/157 (60%), Gaps = 11/157 (7%)
Query: 15 LKSSDGETFEVEETVALQSQTIRHMVED-----DCADSVIPLPNVTGTILSMVVEYCKKH 69
L+SSDGE FEV+ +A QS TI+ M+ED + D +PLPNV IL V+++C H
Sbjct: 9 LQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHH 68
Query: 70 VEXXXXXXGGDN------DVKNWDRDFVKVDQETXXXXXXXXXXXXIKDLLELTCQATAD 123
+ +N D+ WD++F+KVDQ T IK LL++TC+ A+
Sbjct: 69 KDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVAN 128
Query: 124 VIKDKSPEEVRRIFHINNDFTPQEEQEIRRENQWAFE 160
+IK K+PEE+R+ F+I NDFT +EE ++R+ENQW E
Sbjct: 129 MIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 165
>pdb|3MKS|A Chain A, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|C Chain C, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|A Chain A, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|C Chain C, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 169
Score = 107 bits (267), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 90/156 (57%), Gaps = 12/156 (7%)
Query: 15 LKSSDGETFEVEETVALQSQTIRHMVEDDCADS-------VIPLPNVTGTILSMVVEYCK 67
L S +GE F V++ +A +S +++ + D D V+P+PNV ++L V+E+ +
Sbjct: 11 LVSGEGERFTVDKKIAERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAE 70
Query: 68 KHVEXXXXXXGGDND-----VKNWDRDFVKVDQETXXXXXXXXXXXXIKDLLELTCQATA 122
H + D+ V +WDR+F+KVDQE IK LL+ C+ A
Sbjct: 71 HHRDSNFPDEDDDDSRKSAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVA 130
Query: 123 DVIKDKSPEEVRRIFHINNDFTPQEEQEIRRENQWA 158
++I+ +SPEE+RR F+I NDFTP+EE IRREN+WA
Sbjct: 131 EMIRGRSPEEIRRTFNIVNDFTPEEEAAIRRENEWA 166
>pdb|1FS1|B Chain B, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS1|D Chain D, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|B Chain B, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|D Chain D, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
Length = 141
Score = 107 bits (266), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 59/136 (43%), Positives = 82/136 (60%), Gaps = 7/136 (5%)
Query: 15 LKSSDGETFEVEETVALQSQTIRHMVEDDCADSVIPLPNVTGTILSMVVEYCKKHVEXXX 74
L+SSDGE FEV+ +A QS TI+ M+ED D V PLPNV IL V+++C H +
Sbjct: 6 LQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDPV-PLPNVNAAILKKVIQWCTHHKDDPP 64
Query: 75 XXXGGDN------DVKNWDRDFVKVDQETXXXXXXXXXXXXIKDLLELTCQATADVIKDK 128
+N D+ WD++F+KVDQ T IK LL++TC+ A++IK K
Sbjct: 65 PPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGK 124
Query: 129 SPEEVRRIFHINNDFT 144
+PEE+R+ F+I NDFT
Sbjct: 125 TPEEIRKTFNIKNDFT 140
>pdb|1NEX|A Chain A, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|C Chain C, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 169
Score = 103 bits (256), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 88/156 (56%), Gaps = 12/156 (7%)
Query: 15 LKSSDGETFEVEETVALQSQTIRHMVEDDCADS-------VIPLPNVTGTILSMVVEYCK 67
L S +GE F V++ +A +S +++ + D D V P+PNV ++L V+E+ +
Sbjct: 11 LVSGEGERFTVDKKIAERSLLLKNYLNDXGDDDDEDDDEIVXPVPNVRSSVLQKVIEWAE 70
Query: 68 KHVEXXXXXXGGDND-----VKNWDRDFVKVDQETXXXXXXXXXXXXIKDLLELTCQATA 122
H + D+ V +WDR+F+KVDQE IK LL+ C+ A
Sbjct: 71 HHRDSNFPDEDDDDSRKSAPVDSWDREFLKVDQEXLYEIILAANYLNIKPLLDAGCKVVA 130
Query: 123 DVIKDKSPEEVRRIFHINNDFTPQEEQEIRRENQWA 158
+ I+ +SPEE+RR F+I NDFTP+EE IRREN+WA
Sbjct: 131 EXIRGRSPEEIRRTFNIVNDFTPEEEAAIRRENEWA 166
>pdb|1LDK|D Chain D, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 133
Score = 96.7 bits (239), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 77/130 (59%), Gaps = 7/130 (5%)
Query: 15 LKSSDGETFEVEETVALQSQTIRHMVEDDCADSVIPLPNVTGTILSMVVEYCKKHVEXXX 74
L+SSDGE FEV+ +A QS TI+ M+ED D V PLPNV IL V+++C H +
Sbjct: 5 LQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDPV-PLPNVNAAILKKVIQWCTHHKDDPP 63
Query: 75 XXXGGDN------DVKNWDRDFVKVDQETXXXXXXXXXXXXIKDLLELTCQATADVIKDK 128
+N D+ WD++F+KVDQ T IK LL++TC+ A++IK K
Sbjct: 64 PPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGK 123
Query: 129 SPEEVRRIFH 138
+PEE+R+ F+
Sbjct: 124 TPEEIRKTFN 133
>pdb|3G7Y|A Chain A, Crystal Structure Of Oxidized Ost6l
pdb|3G9B|A Chain A, Crystal Structure Of Reduced Ost6l
pdb|3GA4|A Chain A, Crystal Structure Of Ost6l (Photoreduced Form)
Length = 178
Score = 29.3 bits (64), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 25/42 (59%)
Query: 114 LELTCQATADVIKDKSPEEVRRIFHINNDFTPQEEQEIRREN 155
E T A ADVI+ ++P+ + F ++ + PQ ++++ +N
Sbjct: 62 FEKTYHAVADVIRSQAPQSLNLFFTVDVNEVPQLVKDLKLQN 103
>pdb|3AIN|A Chain A, R267g Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIN|B Chain B, R267g Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIN|C Chain C, R267g Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIN|D Chain D, R267g Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
Length = 323
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 110 IKDLLELTCQATADVIKDKSPEEVRRIFHINNDFTPQEE 148
IK LLE T Q I S EE+R +F + TP+EE
Sbjct: 26 IKKLLESTIQLP---IGKASVEEIRSLFKQFSSLTPREE 61
>pdb|3AIO|A Chain A, R267k Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIO|B Chain B, R267k Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIO|C Chain C, R267k Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIO|D Chain D, R267k Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
Length = 323
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 110 IKDLLELTCQATADVIKDKSPEEVRRIFHINNDFTPQEE 148
IK LLE T Q I S EE+R +F + TP+EE
Sbjct: 26 IKKLLESTIQLP---IGKASVEEIRSLFKQFSSLTPREE 61
>pdb|3AIM|A Chain A, R267e Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIM|B Chain B, R267e Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIM|C Chain C, R267e Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIM|D Chain D, R267e Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
Length = 323
Score = 27.3 bits (59), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 110 IKDLLELTCQATADVIKDKSPEEVRRIFHINNDFTPQEE 148
IK LLE T Q I S EE+R +F + TP+EE
Sbjct: 26 IKKLLESTIQLP---IGKASVEEIRSLFKQFSSLTPREE 61
>pdb|3AIK|A Chain A, Crystal Structure Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIK|B Chain B, Crystal Structure Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIK|C Chain C, Crystal Structure Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIK|D Chain D, Crystal Structure Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIL|A Chain A, Crystal Structure Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii Complexed With Paraoxon
pdb|3AIL|B Chain B, Crystal Structure Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii Complexed With Paraoxon
pdb|3AIL|C Chain C, Crystal Structure Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii Complexed With Paraoxon
pdb|3AIL|D Chain D, Crystal Structure Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii Complexed With Paraoxon
Length = 323
Score = 27.3 bits (59), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 110 IKDLLELTCQATADVIKDKSPEEVRRIFHINNDFTPQEE 148
IK LLE T Q I S EE+R +F + TP+EE
Sbjct: 26 IKKLLESTIQLP---IGKASVEEIRSLFKQFSSLTPREE 61
>pdb|3QBD|A Chain A, 3-Dehydroquinate Synthase (Arob) From Mycobacterium
Tuberculosis In Complex With Nad
pdb|3QBD|B Chain B, 3-Dehydroquinate Synthase (Arob) From Mycobacterium
Tuberculosis In Complex With Nad
pdb|3QBE|A Chain A, Crystal Structure Of The 3-Dehydroquinate Synthase (Arob)
From Mycobacterium Tuberculosis
Length = 368
Score = 26.9 bits (58), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 110 IKDLLELTCQATADVIKDKSPEEVRRIFHINNDFTPQEEQE 150
I DL+E QA D D PE +RR + + +E+E
Sbjct: 204 ILDLIEADPQAALDPAGDVLPELIRRAITVKAEVVAADEKE 244
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.132 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,832,207
Number of Sequences: 62578
Number of extensions: 122730
Number of successful extensions: 263
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 233
Number of HSP's gapped (non-prelim): 18
length of query: 160
length of database: 14,973,337
effective HSP length: 91
effective length of query: 69
effective length of database: 9,278,739
effective search space: 640232991
effective search space used: 640232991
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.7 bits)