Query 044292
Match_columns 160
No_of_seqs 112 out of 774
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 23:13:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044292.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044292hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v7d_A Suppressor of kinetocho 100.0 1.4E-54 4.9E-59 324.1 15.7 154 6-160 3-168 (169)
2 2p1m_A SKP1-like protein 1A; F 100.0 5.3E-53 1.8E-57 313.2 4.7 151 10-160 3-160 (160)
3 2ast_A S-phase kinase-associat 100.0 1.3E-48 4.3E-53 289.3 15.6 147 12-158 2-159 (159)
4 1fs1_B SKP1, cyclin A/CDK2-ass 100.0 1.3E-45 4.3E-50 268.4 11.6 133 12-145 3-141 (141)
5 1hv2_A Elongin C, ELC1; protei 100.0 4.1E-28 1.4E-32 166.2 9.6 95 10-110 3-99 (99)
6 1vcb_B Protein (elongin C); tu 99.9 2.2E-27 7.6E-32 165.8 8.9 93 9-110 15-112 (112)
7 2fnj_C Transcription elongatio 99.9 3E-27 1E-31 161.0 7.8 91 11-110 1-96 (96)
8 4ajy_C Transcription elongatio 99.9 5.7E-25 2E-29 149.9 7.9 90 12-110 3-97 (97)
9 2yy9_A Zinc finger and BTB dom 99.2 3.3E-11 1.1E-15 85.7 5.7 97 12-130 27-124 (135)
10 2vkp_A BTB/POZ domain-containi 99.1 5.3E-10 1.8E-14 76.0 9.7 93 12-124 10-108 (109)
11 1buo_A POZ domain, protein (pr 99.1 1.1E-09 3.7E-14 76.2 10.0 91 12-125 30-121 (121)
12 2vpk_A Myoneurin; transcriptio 99.0 3.6E-09 1.2E-13 72.8 10.2 89 12-122 24-115 (116)
13 3b84_A Zinc finger and BTB dom 99.0 1.1E-09 3.8E-14 76.0 7.6 90 12-123 26-116 (119)
14 3htm_A Speckle-type POZ protei 99.0 3.9E-09 1.3E-13 77.0 10.7 103 12-135 36-142 (172)
15 2if5_A Zinc finger and BTB dom 99.0 4.2E-09 1.4E-13 72.8 10.3 89 12-121 27-119 (120)
16 2q81_A MIZ-1 protein; BTB/POZ 99.0 2.7E-09 9.3E-14 74.0 9.3 88 12-122 29-117 (119)
17 3ga1_A Nucleus accumbens-assoc 99.0 1E-09 3.4E-14 77.2 6.0 90 12-123 35-126 (129)
18 1r29_A B-cell lymphoma 6 prote 98.9 8E-09 2.7E-13 72.2 10.2 91 12-123 31-125 (127)
19 4eoz_A Speckle-type POZ protei 98.9 2.3E-09 7.9E-14 76.1 6.8 99 12-131 27-129 (145)
20 2ppi_A Gigaxonin; BTB domain, 98.9 5E-09 1.7E-13 75.2 7.9 89 12-121 49-143 (144)
21 2z8h_A Transcription regulator 98.9 4E-09 1.4E-13 74.9 7.0 95 12-127 38-135 (138)
22 3hve_A Gigaxonin; ubiquitin, c 98.8 1.6E-08 5.4E-13 78.6 7.8 100 12-132 33-138 (256)
23 3i3n_A Kelch-like protein 11; 98.8 1.2E-08 4.1E-13 80.3 7.0 102 12-133 34-147 (279)
24 3ohu_A Transcription regulator 98.8 2E-09 6.7E-14 75.1 1.9 88 12-120 34-124 (125)
25 3hqi_A Speckle-type POZ protei 98.7 1.2E-07 4.2E-12 75.5 10.7 102 12-134 176-281 (312)
26 3m5b_A Zinc finger and BTB dom 98.7 1.2E-08 4E-13 71.1 3.4 85 12-123 32-117 (119)
27 3fkc_A Transcriptional regulat 98.7 9.2E-08 3.2E-12 66.0 7.8 82 12-115 33-115 (116)
28 2ihc_A Transcription regulator 98.6 1.2E-08 4.2E-13 71.1 2.7 89 12-121 31-122 (124)
29 3drz_A BTB/POZ domain-containi 94.2 0.5 1.7E-05 31.5 8.9 93 10-123 5-106 (107)
30 3drx_A BTB/POZ domain-containi 88.2 0.93 3.2E-05 33.9 5.5 101 2-124 4-113 (202)
31 2xf7_A GP23.1; viral protein; 79.6 2.3 7.7E-05 24.0 3.2 36 120-157 10-46 (51)
32 3tnt_A SARS coronavirus main p 74.2 2.5 8.6E-05 33.1 3.3 99 47-148 189-296 (306)
33 3d23_B 3C-like proteinase; mai 60.4 3.8 0.00013 32.0 1.8 99 47-149 191-296 (302)
34 3tlo_A 3CL-Pro, 3CLP, 3C-like 56.6 2.6 8.8E-05 33.0 0.3 99 47-149 189-294 (303)
35 2k9n_A MYB24; R2R3 domain, DNA 55.7 22 0.00076 23.1 4.9 35 119-153 25-66 (107)
36 1s1g_A Potassium voltage-gated 51.6 10 0.00034 25.8 2.6 89 10-120 12-107 (124)
37 1gv2_A C-MYB, MYB proto-oncoge 51.5 17 0.00059 23.4 3.8 36 119-154 28-70 (105)
38 2q6f_A Fragment, infectious br 51.5 8.1 0.00028 30.3 2.3 98 47-148 189-299 (309)
39 1h8a_C AMV V-MYB, MYB transfor 50.5 25 0.00086 23.5 4.6 36 118-153 50-92 (128)
40 3i3n_A Kelch-like protein 11; 48.9 24 0.00081 26.7 4.7 65 93-158 139-213 (279)
41 1pd7_B MAD1; PAH2, SIN3, eukar 47.5 5.5 0.00019 19.6 0.5 12 98-109 5-16 (26)
42 3htm_A Speckle-type POZ protei 46.7 11 0.00039 26.0 2.4 34 93-126 132-165 (172)
43 3g5o_A Uncharacterized protein 45.6 46 0.0016 21.8 5.2 49 93-141 47-97 (108)
44 2eqx_A Kelch repeat and BTB do 42.8 17 0.00059 23.4 2.6 46 93-138 8-62 (105)
45 2cqq_A RSGI RUH-037, DNAJ homo 42.2 18 0.00063 22.1 2.5 19 119-138 35-53 (72)
46 3hve_A Gigaxonin; ubiquitin, c 41.6 20 0.0007 26.6 3.3 66 93-159 131-206 (256)
47 1lvo_A Replicase, hydrolase do 41.5 5.5 0.00019 31.1 -0.0 99 47-149 188-293 (302)
48 3osg_A MYB21; transcription-DN 41.5 35 0.0012 22.9 4.1 36 118-153 33-75 (126)
49 3mkl_A HTH-type transcriptiona 40.8 71 0.0024 20.6 7.1 79 53-140 3-84 (120)
50 1wgx_A KIAA1903 protein; MYB D 40.1 19 0.00066 22.2 2.3 20 119-138 35-54 (73)
51 3zqc_A MYB3; transcription-DNA 39.6 16 0.00054 24.8 2.1 34 120-153 27-67 (131)
52 3kvt_A Potassium channel prote 37.5 16 0.00054 24.4 1.8 89 7-116 1-95 (115)
53 4eef_G F-HB80.4, designed hema 37.2 8.1 0.00028 24.1 0.3 46 92-141 24-69 (74)
54 2nz0_B Potassium voltage-gated 36.1 15 0.00051 25.6 1.5 89 11-120 35-129 (140)
55 2f6h_X Myosin-2, type V myosin 35.7 45 0.0015 27.3 4.6 44 95-138 282-325 (419)
56 1ug2_A 2610100B20RIK gene prod 35.6 27 0.00093 22.6 2.6 42 94-138 37-78 (95)
57 2guz_B Mitochondrial import in 32.5 25 0.00086 21.0 2.0 20 128-147 1-23 (65)
58 2eqr_A N-COR1, N-COR, nuclear 31.9 29 0.00099 20.2 2.2 20 119-138 35-54 (61)
59 1x41_A Transcriptional adaptor 31.8 36 0.0012 19.6 2.6 33 100-137 18-50 (60)
60 1ni7_A ER75, hypothetical prot 31.7 68 0.0023 22.6 4.5 35 112-146 86-128 (155)
61 3hm5_A DNA methyltransferase 1 30.6 53 0.0018 21.2 3.4 18 120-137 54-76 (93)
62 2cjj_A Radialis; plant develop 30.4 31 0.001 22.2 2.2 20 119-138 35-54 (93)
63 2qq4_A Iron-sulfur cluster bio 29.9 54 0.0018 22.5 3.6 36 102-137 54-90 (138)
64 3d55_A Antitoxin, uncharacteri 29.7 33 0.0011 21.6 2.3 48 93-140 38-90 (91)
65 3g0m_A Cysteine desulfuration 29.6 55 0.0019 22.7 3.6 35 112-146 79-121 (141)
66 4eo3_A Bacterioferritin comigr 29.3 15 0.00052 28.8 0.7 36 98-143 245-280 (322)
67 3lvl_A NIFU-like protein; prot 28.6 52 0.0018 22.3 3.3 38 101-138 53-91 (129)
68 1xjs_A NIFU-like protein; SR17 28.4 58 0.002 22.6 3.6 38 101-138 55-93 (147)
69 1h89_C C-MYB, MYB proto-oncoge 28.2 53 0.0018 22.7 3.4 35 119-153 82-123 (159)
70 1nn7_A Potassium channel KV4.2 28.0 19 0.00063 23.6 0.9 81 19-120 7-94 (105)
71 1got_G GT-gamma; complex (GTP- 27.8 52 0.0018 20.2 2.9 18 56-73 41-58 (73)
72 1xb4_A VPS25, hypothetical 23. 27.6 25 0.00084 26.1 1.6 14 61-74 33-46 (202)
73 2jsp_A Transcriptional regulat 27.6 25 0.00086 22.5 1.4 17 127-143 43-59 (87)
74 3few_X Colicin S4; cell lysis, 27.6 51 0.0017 27.3 3.5 30 117-146 164-193 (505)
75 1jw2_A Hemolysin expression mo 26.3 1.2E+02 0.0039 18.7 4.2 15 93-107 35-49 (72)
76 1su0_B NIFU like protein ISCU; 26.2 76 0.0026 22.3 3.9 38 101-138 54-92 (159)
77 2lr8_A CAsp8-associated protei 31.8 14 0.00049 22.6 0.0 22 116-138 37-58 (70)
78 2yum_A ZZZ3 protein, zinc fing 25.6 49 0.0017 19.8 2.5 20 118-137 36-55 (75)
79 2yus_A SWI/SNF-related matrix- 25.2 52 0.0018 20.3 2.6 39 94-138 22-60 (79)
80 1ofc_X ISWI protein; nuclear p 25.1 42 0.0014 26.5 2.6 44 90-138 110-153 (304)
81 2f2c_A Cyclin homolog, V-cycli 24.4 79 0.0027 23.5 4.0 40 112-151 95-135 (254)
82 2cqr_A RSGI RUH-043, DNAJ homo 24.1 25 0.00084 21.6 0.9 21 118-138 44-64 (73)
83 3cuq_C Vacuolar protein-sortin 23.6 30 0.001 25.0 1.4 13 61-73 36-48 (176)
84 1tc3_C Protein (TC3 transposas 23.5 82 0.0028 15.9 3.0 17 124-140 18-34 (51)
85 2elk_A SPCC24B10.08C protein; 23.5 62 0.0021 18.5 2.5 39 94-137 13-52 (58)
86 3kdf_A Replication protein A 1 23.2 59 0.002 21.8 2.7 58 10-71 38-111 (121)
87 1vfr_A NAD(P)H\:FMN oxidoreduc 23.1 18 0.0006 25.9 0.0 34 99-142 148-182 (218)
88 2w9y_A CE-FAR-7, fatty acid/re 23.1 67 0.0023 22.4 3.0 48 111-158 89-138 (140)
89 3hqi_A Speckle-type POZ protei 23.0 45 0.0015 25.4 2.4 39 88-126 265-305 (312)
90 3ge6_A Nitroreductase; structu 22.9 17 0.00057 26.1 -0.1 18 126-143 164-182 (212)
91 2z7e_A ISCU protein, NIFU-like 22.9 54 0.0018 23.1 2.6 37 102-138 53-90 (157)
92 1j2j_B ADP-ribosylation factor 22.7 1.1E+02 0.0037 17.0 3.3 20 116-135 8-27 (45)
93 3gag_A Putative NADH dehydroge 22.3 21 0.00072 25.4 0.3 19 125-143 157-175 (206)
94 2ki0_A DS119; beta-alpha-beta, 22.1 55 0.0019 16.7 1.8 12 144-155 13-24 (36)
95 2fre_A NAD(P)H-flavin oxidored 21.4 34 0.0012 24.3 1.3 36 97-142 117-152 (200)
96 1x3u_A Transcriptional regulat 21.2 98 0.0033 18.0 3.3 21 120-140 24-44 (79)
97 3pvv_A Chromosomal replication 21.2 1.6E+02 0.0054 19.0 4.4 29 113-142 36-64 (101)
98 2c35_A Human RPB4, DNA-directe 20.9 2.1E+02 0.0074 19.8 5.7 40 113-153 102-142 (152)
99 2ftc_M Mitochondrial ribosomal 20.7 67 0.0023 21.2 2.5 21 118-138 13-33 (110)
100 2ra2_A Putative lipoprotein; X 20.6 65 0.0022 19.3 2.2 14 12-25 5-18 (64)
101 2cu7_A KIAA1915 protein; nucle 20.5 72 0.0025 19.0 2.5 21 118-138 31-51 (72)
102 2pi2_E Replication protein A 1 20.5 71 0.0024 22.2 2.7 61 9-70 58-131 (142)
103 4b0z_A RPN12, 26S proteasome r 20.4 97 0.0033 22.9 3.7 63 94-159 149-219 (229)
104 2kvc_A Putative uncharacterize 20.3 1.9E+02 0.0065 18.9 5.7 27 128-154 57-85 (103)
105 1v2y_A 3300001G02RIK protein; 20.0 69 0.0024 20.9 2.5 15 12-26 9-23 (105)
No 1
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=100.00 E-value=1.4e-54 Score=324.12 Aligned_cols=154 Identities=43% Similarity=0.777 Sum_probs=133.3
Q ss_pred CCCCCccEEEEcCCCCEEEecHHHHHHhHHHHHHHhhcCC-----C--CccccCCCCHHHHHHHHHHHHhchhhhhhc--
Q 044292 6 ENNSKKMIILKSSDGETFEVEETVALQSQTIRHMVEDDCA-----D--SVIPLPNVTGTILSMVVEYCKKHVEAAAAA-- 76 (160)
Q Consensus 6 ~~~~~~~i~l~s~DG~~~~v~~~~a~~S~~l~~~l~~~~~-----~--~~Ipl~~i~~~~L~~Ii~~~~~h~~~~~~~-- 76 (160)
.|++ ++|+|+|+||+.|.|++.+|.+|++|++|+++.+. + .+||||+|++.+|++|++||+||+.++++.
T Consensus 3 ~m~~-~~i~L~SsDG~~F~V~~~vA~~S~tIk~ml~~~~~~~~~~~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~ 81 (169)
T 3v7d_A 3 HMVT-SNVVLVSGEGERFTVDKKIAERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDED 81 (169)
T ss_dssp ---C-CEEEEECTTCCEEEEEHHHHTTSHHHHHHHHC-----------CEEECTTCCHHHHHHHHHHHHHTTTCCCCC--
T ss_pred CCCC-CeEEEEeCCCCEEEecHHHHHHhHHHHHHHHhcCcccccccCCCceeeCCCCHHHHHHHHHHHHHcccCCCcccc
Confidence 4655 79999999999999999999999999999997653 3 789999999999999999999999876432
Q ss_pred ---cCCCCCccchhhhhccCCHHHHHHHHHhhhhcCchhHHHHHHHHHHHHHhCCCHHHHHHHcCCCCCCCHHHHHHHHH
Q 044292 77 ---AGGDNDVKNWDRDFVKVDQETLLDLLLAANYLNIKDLLELTCQATADVIKDKSPEEVRRIFHINNDFTPQEEQEIRR 153 (160)
Q Consensus 77 ---~~~~~~~~~wd~~Fl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i~~kt~eeir~~f~i~~d~t~eee~~~~~ 153 (160)
......+++||++|++++.+.||+|+.||+||+|++|+++||++||++|+|||++|||++|||++||||||++++|+
T Consensus 82 ~~~~~~~~~i~~wD~~Fl~vd~~~LfeLi~AAnyLdIk~Lldl~c~~vA~~ikgktpeeiR~~f~I~nd~t~eEe~~ir~ 161 (169)
T 3v7d_A 82 DDDSRKSAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAIRR 161 (169)
T ss_dssp ------CCCCCHHHHHHTCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCCCCCHHHHHHHHT
T ss_pred cccccccccccHHHHHHHcCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 13466789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccC
Q 044292 154 ENQWAFE 160 (160)
Q Consensus 154 e~~w~~~ 160 (160)
||+|+||
T Consensus 162 en~W~~~ 168 (169)
T 3v7d_A 162 ENEWAED 168 (169)
T ss_dssp TC-----
T ss_pred hcccccc
Confidence 9999997
No 2
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=100.00 E-value=5.3e-53 Score=313.21 Aligned_cols=151 Identities=70% Similarity=1.132 Sum_probs=89.3
Q ss_pred CccEEEEcCCCCEEEecHHHHHHhHHHHHHHhhcCCCCccccCCCCHHHHHHHHHHHHhchhhhhhc-------cCCCCC
Q 044292 10 KKMIILKSSDGETFEVEETVALQSQTIRHMVEDDCADSVIPLPNVTGTILSMVVEYCKKHVEAAAAA-------AGGDND 82 (160)
Q Consensus 10 ~~~i~l~s~DG~~~~v~~~~a~~S~~l~~~l~~~~~~~~Ipl~~i~~~~L~~Ii~~~~~h~~~~~~~-------~~~~~~ 82 (160)
+++|+|+|+||+.|.|++.+|.+|++|++|+++.+...+||||+|++.+|++|++||+||+.++++. ......
T Consensus 3 ~~~v~L~SsDg~~f~v~~~vA~~S~~ik~ml~~~~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~~ 82 (160)
T 2p1m_A 3 AKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKRHVEAAASKAEAVEGAATSDDD 82 (160)
T ss_dssp -----CCC---------CHHHHTCTTTC------------CCTTSCHHHHHHHHHC------------------------
T ss_pred CCEEEEEcCCCCEEEECHHHHHHhHHHHHHHHccCCCCceeCCcCcHHHHHHHHHHHHHcccCCCcccccccccccccch
Confidence 4689999999999999999999999999999987667799999999999999999999999875432 135677
Q ss_pred ccchhhhhccCCHHHHHHHHHhhhhcCchhHHHHHHHHHHHHHhCCCHHHHHHHcCCCCCCCHHHHHHHHHhcccccC
Q 044292 83 VKNWDRDFVKVDQETLLDLLLAANYLNIKDLLELTCQATADVIKDKSPEEVRRIFHINNDFTPQEEQEIRRENQWAFE 160 (160)
Q Consensus 83 ~~~wd~~Fl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i~~kt~eeir~~f~i~~d~t~eee~~~~~e~~w~~~ 160 (160)
+++||++|++++.+.|++|+.||+||+|++|+++||+++|.+|+|||++|||++|||++||||||++++|+||+|+||
T Consensus 83 i~~wD~~Fl~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~eeir~~f~I~nd~t~eEe~~ir~en~w~~~ 160 (160)
T 2p1m_A 83 LKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160 (160)
T ss_dssp ------------------CHHHHHHTTCHHHHHHHHHHHHHTTTTCCHHHHHHHTTCCCCCCHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHcCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCHHHHHHHHHhCccccC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999997
No 3
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=100.00 E-value=1.3e-48 Score=289.35 Aligned_cols=147 Identities=50% Similarity=0.876 Sum_probs=133.6
Q ss_pred cEEEEcCCCCEEEecHHHHHHhHHHHHHHhhcC-C----CCccccCCCCHHHHHHHHHHHHhchhhhhhc------cCCC
Q 044292 12 MIILKSSDGETFEVEETVALQSQTIRHMVEDDC-A----DSVIPLPNVTGTILSMVVEYCKKHVEAAAAA------AGGD 80 (160)
Q Consensus 12 ~i~l~s~DG~~~~v~~~~a~~S~~l~~~l~~~~-~----~~~Ipl~~i~~~~L~~Ii~~~~~h~~~~~~~------~~~~ 80 (160)
.|+|+|+||+.|.|++.+|.+|++|++|+++.+ . ..+||||+|++.+|++|++||+||+.++++. ....
T Consensus 2 ~v~L~ssDg~~f~v~~~vA~~S~~i~~m~~~~~~~~e~~~~~Ipl~~V~~~iL~kViey~~~h~~~~~~~~~~~~~~~~~ 81 (159)
T 2ast_A 2 SIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRT 81 (159)
T ss_dssp EEEEECTTSCEEEEEHHHHHTCHHHHHHTTSSCSS------CEECTTSCHHHHHHHHHHHHHTTTCCC-----------C
T ss_pred eEEEEcCCCCEEEeCHHHHHHhHHHHHHHHhcCCcccccCCCcCCCCccHHHHHHHHHHHHHcCcCCCCcccccccccch
Confidence 489999999999999999999999999998743 2 2689999999999999999999999776432 1346
Q ss_pred CCccchhhhhccCCHHHHHHHHHhhhhcCchhHHHHHHHHHHHHHhCCCHHHHHHHcCCCCCCCHHHHHHHHHhcccc
Q 044292 81 NDVKNWDRDFVKVDQETLLDLLLAANYLNIKDLLELTCQATADVIKDKSPEEVRRIFHINNDFTPQEEQEIRRENQWA 158 (160)
Q Consensus 81 ~~~~~wd~~Fl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i~~kt~eeir~~f~i~~d~t~eee~~~~~e~~w~ 158 (160)
..+++||++|++++.+.+++|+.||+||+|++|+++||+++|.+|+|||++|||++|||++||||||++++|+||+|+
T Consensus 82 ~~i~~wD~~F~~id~~~l~eLl~AAnyL~I~~Lld~~c~~va~~i~gkt~eeir~~f~I~~d~t~eEe~~ir~en~w~ 159 (159)
T 2ast_A 82 DDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWC 159 (159)
T ss_dssp CCCCHHHHHHTCSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSSCCHHHHHHHTTCCCCSCTTHHHHHHHHTTTC
T ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCHHHHHHHHHhCCCC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999999996
No 4
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=100.00 E-value=1.3e-45 Score=268.37 Aligned_cols=133 Identities=49% Similarity=0.836 Sum_probs=111.5
Q ss_pred cEEEEcCCCCEEEecHHHHHHhHHHHHHHhhcCCCCccccCCCCHHHHHHHHHHHHhchhhhhhc------cCCCCCccc
Q 044292 12 MIILKSSDGETFEVEETVALQSQTIRHMVEDDCADSVIPLPNVTGTILSMVVEYCKKHVEAAAAA------AGGDNDVKN 85 (160)
Q Consensus 12 ~i~l~s~DG~~~~v~~~~a~~S~~l~~~l~~~~~~~~Ipl~~i~~~~L~~Ii~~~~~h~~~~~~~------~~~~~~~~~ 85 (160)
.|+|+|+||+.|.|++.+|.+|++|++|+++.+ +++||||+|++.+|++|++||+||+.++.+. ......+++
T Consensus 3 ~v~L~SsDg~~f~v~~~vA~~S~~ik~ml~~~~-~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~i~~ 81 (141)
T 1fs1_B 3 SIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLG-MDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPV 81 (141)
T ss_dssp EEEEECTTSCEEEEEGGGGGTCHHHHHHHHHTC-CSSEECTTCCHHHHHHHHHHHHHHTTCC-----------------H
T ss_pred eEEEEeCCCCEEEecHHHHHHhHHHHHHHHhcC-CCceecCCcCHHHHHHHHHHHHHhccCCCccccccccccchhhhhH
Confidence 599999999999999999999999999999866 7799999999999999999999999876432 134677899
Q ss_pred hhhhhccCCHHHHHHHHHhhhhcCchhHHHHHHHHHHHHHhCCCHHHHHHHcCCCCCCCH
Q 044292 86 WDRDFVKVDQETLLDLLLAANYLNIKDLLELTCQATADVIKDKSPEEVRRIFHINNDFTP 145 (160)
Q Consensus 86 wd~~Fl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i~~kt~eeir~~f~i~~d~t~ 145 (160)
||++|++++.+.+++|+.||+||+|++|+++||+++|.+|+|||++|||++|||++||||
T Consensus 82 wD~~F~~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~eeiR~~f~I~~d~tp 141 (141)
T 1fs1_B 82 WDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTE 141 (141)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCHHHHHHHTC-------
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999997
No 5
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=99.95 E-value=4.1e-28 Score=166.19 Aligned_cols=95 Identities=28% Similarity=0.517 Sum_probs=83.5
Q ss_pred CccEEEEcCCCCEEEecHHHHHHhHHHHHHHhhcC--CCCccccCCCCHHHHHHHHHHHHhchhhhhhccCCCCCccchh
Q 044292 10 KKMIILKSSDGETFEVEETVALQSQTIRHMVEDDC--ADSVIPLPNVTGTILSMVVEYCKKHVEAAAAAAGGDNDVKNWD 87 (160)
Q Consensus 10 ~~~i~l~s~DG~~~~v~~~~a~~S~~l~~~l~~~~--~~~~Ipl~~i~~~~L~~Ii~~~~~h~~~~~~~~~~~~~~~~wd 87 (160)
+++|+|+|+||+.|.|++.+|.+|++|++|++++. ...+||||+|++.+|++|++||+||+.++.+. .....+++|
T Consensus 3 ~~~v~L~SsDg~~f~V~~~vA~~S~~ik~ml~~~~e~~~~~Iplp~V~~~iL~kVieyc~~h~~~~~~~-~~~~~i~~w- 80 (99)
T 1hv2_A 3 QDFVTLVSKDDKEYEISRSAAMISPTLKAMIEGPFRESKGRIELKQFDSHILEKAVEYLNYNLKYSGVS-EDDDEIPEF- 80 (99)
T ss_dssp CSEEEEEETTTEEEEEEHHHHTTCHHHHHHHHSSTTTCTTEEEETTSCHHHHHHHHHHHHHHHHHHHHC-SSCSSCCCC-
T ss_pred CcEEEEEecCCCEEEECHHHHHHhHHHHHHHhcccccCCCceecCCcCHHHHHHHHHHHHHhcccCCCc-cccccCCCc-
Confidence 36999999999999999999999999999998732 23789999999999999999999999876532 234567888
Q ss_pred hhhccCCHHHHHHHHHhhhhcCc
Q 044292 88 RDFVKVDQETLLDLLLAANYLNI 110 (160)
Q Consensus 88 ~~Fl~~~~~~l~~Ll~AA~~L~I 110 (160)
+++++.||+|+.|||||+|
T Consensus 81 ----~vd~~~lfeLi~AAnyLdI 99 (99)
T 1hv2_A 81 ----EIPTEMSLELLLAADYLSI 99 (99)
T ss_dssp ----CCCHHHHHHHHHHHHHHCC
T ss_pred ----cCCHHHHHHHHHHHHHhCc
Confidence 7899999999999999997
No 6
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=99.94 E-value=2.2e-27 Score=165.81 Aligned_cols=93 Identities=28% Similarity=0.426 Sum_probs=80.9
Q ss_pred CCccEEEEcCCCCEEEecHHHHHHhHHHHHHHhhcCC-----CCccccCCCCHHHHHHHHHHHHhchhhhhhccCCCCCc
Q 044292 9 SKKMIILKSSDGETFEVEETVALQSQTIRHMVEDDCA-----DSVIPLPNVTGTILSMVVEYCKKHVEAAAAAAGGDNDV 83 (160)
Q Consensus 9 ~~~~i~l~s~DG~~~~v~~~~a~~S~~l~~~l~~~~~-----~~~Ipl~~i~~~~L~~Ii~~~~~h~~~~~~~~~~~~~~ 83 (160)
++++|+|+|+||++|.|++.+|++|++|++|+++.+. ..+||||+|++.+|++|++||+||+.++. ....+
T Consensus 15 ~~~~v~L~SsDG~~F~V~~~~A~~S~tIk~ml~~~~~~~e~~~~~IplpnV~s~iL~kVieyc~~h~~~~~----~~~~i 90 (112)
T 1vcb_B 15 DAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTN----SSTEI 90 (112)
T ss_dssp --CEEEEECTTSCEEEEEHHHHHTSHHHHHHSSCC--------CEEECSSCCHHHHHHHHHHHHHHHHHSS----CSSCC
T ss_pred CCCEEEEEcCCCCEEEECHHHHHHhHHHHHHHHhcCCcccccCCceeCCCCCHHHHHHHHHHHHHhhhccC----CcCCC
Confidence 4679999999999999999999999999999987542 25899999999999999999999998753 34567
Q ss_pred cchhhhhccCCHHHHHHHHHhhhhcCc
Q 044292 84 KNWDRDFVKVDQETLLDLLLAANYLNI 110 (160)
Q Consensus 84 ~~wd~~Fl~~~~~~l~~Ll~AA~~L~I 110 (160)
++| +++++.||+|+.|||||+|
T Consensus 91 ~~w-----~vd~~~lfeLi~AAnyLdI 112 (112)
T 1vcb_B 91 PEF-----PIAPEIALELLMAANFLDC 112 (112)
T ss_dssp CCC-----CCCHHHHHHHHHHHHHHTC
T ss_pred CCc-----ccCHHHHHHHHHHHHHhCc
Confidence 888 7899999999999999997
No 7
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=99.94 E-value=3e-27 Score=160.99 Aligned_cols=91 Identities=29% Similarity=0.435 Sum_probs=80.3
Q ss_pred ccEEEEcCCCCEEEecHHHHHHhHHHHHHHhhcCC-----CCccccCCCCHHHHHHHHHHHHhchhhhhhccCCCCCccc
Q 044292 11 KMIILKSSDGETFEVEETVALQSQTIRHMVEDDCA-----DSVIPLPNVTGTILSMVVEYCKKHVEAAAAAAGGDNDVKN 85 (160)
Q Consensus 11 ~~i~l~s~DG~~~~v~~~~a~~S~~l~~~l~~~~~-----~~~Ipl~~i~~~~L~~Ii~~~~~h~~~~~~~~~~~~~~~~ 85 (160)
++|+|+|+||+.|.|++.+|++|++|++|+++.+. ..+||||+|++.+|++|++||+||+.++. ....+++
T Consensus 1 ~~v~L~SsDg~~f~V~~~~A~~S~~ik~ml~~~~~~~e~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~----~~~~i~~ 76 (96)
T 2fnj_C 1 MYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTN----SSTEIPE 76 (96)
T ss_dssp CEEEEECTTSCEEEEEHHHHTTSHHHHHHHHCC--------CEEECSSCCHHHHHHHHHHHHHHHHHHS----CCSCCCC
T ss_pred CeEEEEecCCCEEEeCHHHHHHhHHHHHHHHccCCcccccCCceeCCCCCHHHHHHHHHHHHHccccCC----CcccCCC
Confidence 47999999999999999999999999999997542 26899999999999999999999997753 3456788
Q ss_pred hhhhhccCCHHHHHHHHHhhhhcCc
Q 044292 86 WDRDFVKVDQETLLDLLLAANYLNI 110 (160)
Q Consensus 86 wd~~Fl~~~~~~l~~Ll~AA~~L~I 110 (160)
| +++++.||+|+.|||||+|
T Consensus 77 w-----~vd~~~l~eLi~AAnyLdI 96 (96)
T 2fnj_C 77 F-----PIAPEIALELLMAANFLDC 96 (96)
T ss_dssp C-----CCCTTTHHHHHHHHHHHTC
T ss_pred c-----ccCHHHHHHHHHHHHHhCc
Confidence 8 7899999999999999997
No 8
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=99.91 E-value=5.7e-25 Score=149.88 Aligned_cols=90 Identities=29% Similarity=0.446 Sum_probs=79.4
Q ss_pred cEEEEcCCCCEEEecHHHHHHhHHHHHHHhhcC-----CCCccccCCCCHHHHHHHHHHHHhchhhhhhccCCCCCccch
Q 044292 12 MIILKSSDGETFEVEETVALQSQTIRHMVEDDC-----ADSVIPLPNVTGTILSMVVEYCKKHVEAAAAAAGGDNDVKNW 86 (160)
Q Consensus 12 ~i~l~s~DG~~~~v~~~~a~~S~~l~~~l~~~~-----~~~~Ipl~~i~~~~L~~Ii~~~~~h~~~~~~~~~~~~~~~~w 86 (160)
+|+|+|+||++|.|++.+|.+|++|++|+++.+ ...+||||+|++.+|++|++||+||+.++. ....+++|
T Consensus 3 ~v~L~SsDg~~F~v~r~vA~~S~~ik~m~~~~~~~~E~~~~~I~l~~V~~~iL~kViey~~~h~~~~~----~~~~i~~~ 78 (97)
T 4ajy_C 3 YVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTN----SSTEIPEF 78 (97)
T ss_dssp EEEEECTTCCEEEEEHHHHTTSHHHHHHHCCC--------CEEECTTSCHHHHHHHHHHHHHHHHHTT----CCSCCCCC
T ss_pred EEEEEecCCcEEEecHHHHHHhHHHHHHHHhCCCccccCCCceECCCCCHHHHHHHHHHHHHhcccCC----CcCCCCcC
Confidence 799999999999999999999999999998743 267899999999999999999999998753 34678889
Q ss_pred hhhhccCCHHHHHHHHHhhhhcCc
Q 044292 87 DRDFVKVDQETLLDLLLAANYLNI 110 (160)
Q Consensus 87 d~~Fl~~~~~~l~~Ll~AA~~L~I 110 (160)
+++.+.+++|+.||+||+.
T Consensus 79 -----~i~~~~l~eLl~AAnyL~~ 97 (97)
T 4ajy_C 79 -----PIAPEIALELLMAANFLDC 97 (97)
T ss_dssp -----CCCGGGHHHHHHHHHHHTC
T ss_pred -----cCCHHHHHHHHHHHhhhCC
Confidence 5899999999999999983
No 9
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=99.17 E-value=3.3e-11 Score=85.70 Aligned_cols=97 Identities=18% Similarity=0.224 Sum_probs=74.0
Q ss_pred cEEEEcCCCCEEEecHHH-HHHhHHHHHHHhhcCCCCccccCCCCHHHHHHHHHHHHhchhhhhhccCCCCCccchhhhh
Q 044292 12 MIILKSSDGETFEVEETV-ALQSQTIRHMVEDDCADSVIPLPNVTGTILSMVVEYCKKHVEAAAAAAGGDNDVKNWDRDF 90 (160)
Q Consensus 12 ~i~l~s~DG~~~~v~~~~-a~~S~~l~~~l~~~~~~~~Ipl~~i~~~~L~~Ii~~~~~h~~~~~~~~~~~~~~~~wd~~F 90 (160)
.++|+. +|+.|.+++.+ +..|++++.|+.... ...|.|++++..+++.+++|++...
T Consensus 27 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~mf~~~~-~~~i~l~~~~~~~f~~lL~fiYtg~-------------------- 84 (135)
T 2yy9_A 27 DATLDV-GGLVFKAHWSVLACCSHFFQRIYGDGT-GGSVVLPAGFAEIFGLLLDFFYTGH-------------------- 84 (135)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHTCC-----CCEEECGGGHHHHHHHHHHHHHSC--------------------
T ss_pred ceEEEE-CCEEEehHHHHHHHhCHHHHHHHcCCC-CCeEEeCCCCHHHHHHHHHHHhCCC--------------------
Confidence 466765 68999999998 468999999997643 5679999999999999999999633
Q ss_pred ccCCHHHHHHHHHhhhhcCchhHHHHHHHHHHHHHhCCCH
Q 044292 91 VKVDQETLLDLLLAANYLNIKDLLELTCQATADVIKDKSP 130 (160)
Q Consensus 91 l~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i~~kt~ 130 (160)
+.++.+.+.+|+.||++|+|+.|.+.|++++...+.++++
T Consensus 85 ~~i~~~~v~~ll~~A~~l~i~~L~~~C~~~l~~~l~~~~~ 124 (135)
T 2yy9_A 85 LALTSGNRDQVLLAAKELRVPEAVELCQSFQPQTSVGQAQ 124 (135)
T ss_dssp CCCCTTTHHHHHHHHHHTTCHHHHHHHHHCCC--------
T ss_pred CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccCCCC
Confidence 1345567999999999999999999999999998888765
No 10
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=99.12 E-value=5.3e-10 Score=76.02 Aligned_cols=93 Identities=17% Similarity=0.208 Sum_probs=77.0
Q ss_pred cEEEEcCCC---CEEEecHHHH-HHhHHHHHHHhhcC--CCCccccCCCCHHHHHHHHHHHHhchhhhhhccCCCCCccc
Q 044292 12 MIILKSSDG---ETFEVEETVA-LQSQTIRHMVEDDC--ADSVIPLPNVTGTILSMVVEYCKKHVEAAAAAAGGDNDVKN 85 (160)
Q Consensus 12 ~i~l~s~DG---~~~~v~~~~a-~~S~~l~~~l~~~~--~~~~Ipl~~i~~~~L~~Ii~~~~~h~~~~~~~~~~~~~~~~ 85 (160)
.++|+..+| +.|.+++.++ ..|++++.|+.... ....|.+++++..+++.+++|++...
T Consensus 10 Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~~~i~l~~~~~~~f~~~l~~iYt~~--------------- 74 (109)
T 2vkp_A 10 DVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVKSEIHIPDVEPAAFLILLKYMYSDE--------------- 74 (109)
T ss_dssp CEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------CCEEEETTSCHHHHHHHHHHHHHCC---------------
T ss_pred cEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCCCeEEeCCCCHHHHHHHHHHHcCCC---------------
Confidence 688888886 9999999985 58999999997542 12789999999999999999999632
Q ss_pred hhhhhccCCHHHHHHHHHhhhhcCchhHHHHHHHHHHHH
Q 044292 86 WDRDFVKVDQETLLDLLLAANYLNIKDLLELTCQATADV 124 (160)
Q Consensus 86 wd~~Fl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~ 124 (160)
+.++.+.+.+|+.+|++++++.|.+.|..++...
T Consensus 75 -----~~~~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~ 108 (109)
T 2vkp_A 75 -----IDLEADTVLATLYAAKKYIVPALAKACVNFLETS 108 (109)
T ss_dssp -----CCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----ccCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh
Confidence 1245577899999999999999999999999764
No 11
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=99.07 E-value=1.1e-09 Score=76.20 Aligned_cols=91 Identities=21% Similarity=0.288 Sum_probs=76.8
Q ss_pred cEEEEcCCCCEEEecHHHH-HHhHHHHHHHhhcCCCCccccCCCCHHHHHHHHHHHHhchhhhhhccCCCCCccchhhhh
Q 044292 12 MIILKSSDGETFEVEETVA-LQSQTIRHMVEDDCADSVIPLPNVTGTILSMVVEYCKKHVEAAAAAAGGDNDVKNWDRDF 90 (160)
Q Consensus 12 ~i~l~s~DG~~~~v~~~~a-~~S~~l~~~l~~~~~~~~Ipl~~i~~~~L~~Ii~~~~~h~~~~~~~~~~~~~~~~wd~~F 90 (160)
.++|+. +|+.|.+++.++ ..|++++.|+... ...|.+++++..+++.+++|++...
T Consensus 30 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~~f~~~--~~~i~l~~~~~~~f~~ll~~~Ytg~-------------------- 86 (121)
T 1buo_A 30 DVVIMV-DSQEFHAHRTVLACTSKMFEILFHRN--SQHYTLDFLSPKTFQQILEYAYTAT-------------------- 86 (121)
T ss_dssp CEEEEE-SSCEEEECHHHHHHHCHHHHHHTTSC--CSEEEECSSCHHHHHHHHHHHHHSC--------------------
T ss_pred CEEEEE-CCEEEehhHHHHhhcCHHHHHHHcCC--CcEEEeCCCCHHHHHHHHHhhcCCC--------------------
Confidence 466765 689999999985 6899999999753 6689999999999999999999632
Q ss_pred ccCCHHHHHHHHHhhhhcCchhHHHHHHHHHHHHH
Q 044292 91 VKVDQETLLDLLLAANYLNIKDLLELTCQATADVI 125 (160)
Q Consensus 91 l~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i 125 (160)
+.++.+.+.+|+.||++|+++.|.+.|+.++...|
T Consensus 87 ~~~~~~~~~~ll~~A~~~~i~~L~~~c~~~l~~~I 121 (121)
T 1buo_A 87 LQAKAEDLDDLLYAAEILEIEYLEEQCLKMLETIQ 121 (121)
T ss_dssp CCCCGGGHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred cCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHhC
Confidence 12455679999999999999999999999997654
No 12
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=99.00 E-value=3.6e-09 Score=72.84 Aligned_cols=89 Identities=12% Similarity=0.165 Sum_probs=73.3
Q ss_pred cEEEEcCCCCEEEecHHHH-HHhHHHHHHHhhcCCCCccccC--CCCHHHHHHHHHHHHhchhhhhhccCCCCCccchhh
Q 044292 12 MIILKSSDGETFEVEETVA-LQSQTIRHMVEDDCADSVIPLP--NVTGTILSMVVEYCKKHVEAAAAAAGGDNDVKNWDR 88 (160)
Q Consensus 12 ~i~l~s~DG~~~~v~~~~a-~~S~~l~~~l~~~~~~~~Ipl~--~i~~~~L~~Ii~~~~~h~~~~~~~~~~~~~~~~wd~ 88 (160)
.++|+. +|+.|.+++.++ ..|++++.|+... ....|.|+ +++..+++.+++|++...
T Consensus 24 Dv~l~v-~~~~~~aHk~vLaa~S~yF~~~f~~~-~~~~i~l~~~~~~~~~f~~ll~~~Yt~~------------------ 83 (116)
T 2vpk_A 24 DCTIVI-GEFQFKAHRNVLASFSEYFGAIYRST-SENNVFLDQSQVKADGFQKLLEFIYTGT------------------ 83 (116)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHHHTTC-CCSCEECCTTTCCHHHHHHHHHHHHHSC------------------
T ss_pred cEEEEE-CCEEEeccHHHHhhcCHHHHHHHcCC-CCCeEEeecCCCCHHHHHHHHHHHcCCC------------------
Confidence 466665 589999999985 6899999999865 35566666 999999999999998532
Q ss_pred hhccCCHHHHHHHHHhhhhcCchhHHHHHHHHHH
Q 044292 89 DFVKVDQETLLDLLLAANYLNIKDLLELTCQATA 122 (160)
Q Consensus 89 ~Fl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia 122 (160)
+.++.+.+.+|+.||++|+++.|.+.|+.++.
T Consensus 84 --~~~~~~~v~~ll~~A~~~~i~~L~~~C~~~l~ 115 (116)
T 2vpk_A 84 --LNLDSWNVKEIHQAADYLKVEEVVTKCKIKME 115 (116)
T ss_dssp --CCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHC
T ss_pred --cccCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 12455678999999999999999999999874
No 13
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=99.00 E-value=1.1e-09 Score=75.95 Aligned_cols=90 Identities=18% Similarity=0.230 Sum_probs=74.1
Q ss_pred cEEEEcCCCCEEEecHHHH-HHhHHHHHHHhhcCCCCccccCCCCHHHHHHHHHHHHhchhhhhhccCCCCCccchhhhh
Q 044292 12 MIILKSSDGETFEVEETVA-LQSQTIRHMVEDDCADSVIPLPNVTGTILSMVVEYCKKHVEAAAAAAGGDNDVKNWDRDF 90 (160)
Q Consensus 12 ~i~l~s~DG~~~~v~~~~a-~~S~~l~~~l~~~~~~~~Ipl~~i~~~~L~~Ii~~~~~h~~~~~~~~~~~~~~~~wd~~F 90 (160)
.++|+. +|+.|.+++.++ ..|++++.|+.... ...|.+++++..+++.+++|++...
T Consensus 26 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~~f~~~~-~~~i~l~~~~~~~f~~ll~~iYtg~-------------------- 83 (119)
T 3b84_A 26 DATLDV-GGLVFKAHWSVLACCSHFFQSLYGDGS-GGSVVLPAGFAEIFGLLLDFFYTGH-------------------- 83 (119)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHHHTTTT-CCCEEECGGGHHHHHHHHHHHHHSC--------------------
T ss_pred ceEEEE-CCEEEEeeHHHHhhcCHHHHHHHCCCC-CCeEEeCCCCHHHHHHHHHHHcCCC--------------------
Confidence 466665 689999999985 58999999998653 6789999999999999999999532
Q ss_pred ccCCHHHHHHHHHhhhhcCchhHHHHHHHHHHH
Q 044292 91 VKVDQETLLDLLLAANYLNIKDLLELTCQATAD 123 (160)
Q Consensus 91 l~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~ 123 (160)
+.++.+.+.+|+.||++|+++.|.+.|+.++..
T Consensus 84 ~~~~~~~v~~ll~~A~~~~i~~L~~~C~~~l~~ 116 (119)
T 3b84_A 84 LALTSGNRDQVLLAARELRVPEAVELCQSFKPK 116 (119)
T ss_dssp CCCCTTTHHHHHHHHHHTTCHHHHHHHHHCC--
T ss_pred CccCHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 124456688999999999999999999988753
No 14
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=99.00 E-value=3.9e-09 Score=77.01 Aligned_cols=103 Identities=15% Similarity=0.170 Sum_probs=84.1
Q ss_pred cEEEEcCCCCEEEecHHHH-HHhHHHHHHHhhcC---CCCccccCCCCHHHHHHHHHHHHhchhhhhhccCCCCCccchh
Q 044292 12 MIILKSSDGETFEVEETVA-LQSQTIRHMVEDDC---ADSVIPLPNVTGTILSMVVEYCKKHVEAAAAAAGGDNDVKNWD 87 (160)
Q Consensus 12 ~i~l~s~DG~~~~v~~~~a-~~S~~l~~~l~~~~---~~~~Ipl~~i~~~~L~~Ii~~~~~h~~~~~~~~~~~~~~~~wd 87 (160)
.++|+. +|+.|.+++.++ ..|++++.|+.... ....|.+++++..+++.+++|++....
T Consensus 36 Dv~l~v-~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~l~~~Yt~~~---------------- 98 (172)
T 3htm_A 36 DCCLCV-AGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKA---------------- 98 (172)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHHHHSCCCGGGTTEEEECSSCHHHHHHHHHHHHHSCC----------------
T ss_pred ceEEEE-CCEEEEeeHHHHHHcCHHHHHHHccCccccCCCeEEecCCCHHHHHHHHHHHhCCCC----------------
Confidence 467766 689999999985 67999999998542 357899999999999999999986331
Q ss_pred hhhccCCHHHHHHHHHhhhhcCchhHHHHHHHHHHHHHhCCCHHHHHH
Q 044292 88 RDFVKVDQETLLDLLLAANYLNIKDLLELTCQATADVIKDKSPEEVRR 135 (160)
Q Consensus 88 ~~Fl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i~~kt~eeir~ 135 (160)
.++.+.+.+|+.+|++|+++.|.+.|..++...+...+.-++..
T Consensus 99 ----~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~~~~ 142 (172)
T 3htm_A 99 ----PNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILI 142 (172)
T ss_dssp ----TTGGGTHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTTHHHHHH
T ss_pred ----CCcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 23456688999999999999999999999998877777665543
No 15
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=98.99 E-value=4.2e-09 Score=72.85 Aligned_cols=89 Identities=17% Similarity=0.296 Sum_probs=73.7
Q ss_pred cEEEEcCCCCEEEecHHHH-HHhHHHHHHHhhcC---CCCccccCCCCHHHHHHHHHHHHhchhhhhhccCCCCCccchh
Q 044292 12 MIILKSSDGETFEVEETVA-LQSQTIRHMVEDDC---ADSVIPLPNVTGTILSMVVEYCKKHVEAAAAAAGGDNDVKNWD 87 (160)
Q Consensus 12 ~i~l~s~DG~~~~v~~~~a-~~S~~l~~~l~~~~---~~~~Ipl~~i~~~~L~~Ii~~~~~h~~~~~~~~~~~~~~~~wd 87 (160)
.++|+. +|+.|.+++.++ ..|++++.|+.... ....|.+++++..+++.+++|++...
T Consensus 27 Dv~l~v-~~~~~~aHk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~ll~~~Yt~~----------------- 88 (120)
T 2if5_A 27 DVVILV-EGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFAYTAT----------------- 88 (120)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHHHHC-----CCSEEECCSSCHHHHHHHHHHHHHSC-----------------
T ss_pred CeEEEE-CCEEEeHHHHHHHHhCHHHHHHhcCCccccCCceEEeCCCCHHHHHHHHHHHcCCC-----------------
Confidence 566765 689999999985 57999999998542 35678999999999999999999532
Q ss_pred hhhccCCHHHHHHHHHhhhhcCchhHHHHHHHHH
Q 044292 88 RDFVKVDQETLLDLLLAANYLNIKDLLELTCQAT 121 (160)
Q Consensus 88 ~~Fl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~i 121 (160)
+.++.+.+.+|+.||++|+++.|.+.|..++
T Consensus 89 ---~~~~~~~~~~ll~~A~~~~i~~L~~~C~~~L 119 (120)
T 2if5_A 89 ---LTVSTANVGDILSAARLLEIPAVSHVCADLL 119 (120)
T ss_dssp ---CCCCGGGHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ---CccCHHHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 1245678999999999999999999999875
No 16
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=98.99 E-value=2.7e-09 Score=73.96 Aligned_cols=88 Identities=19% Similarity=0.296 Sum_probs=74.0
Q ss_pred cEEEEcCCCCEEEecHHHH-HHhHHHHHHHhhcCCCCccccCCCCHHHHHHHHHHHHhchhhhhhccCCCCCccchhhhh
Q 044292 12 MIILKSSDGETFEVEETVA-LQSQTIRHMVEDDCADSVIPLPNVTGTILSMVVEYCKKHVEAAAAAAGGDNDVKNWDRDF 90 (160)
Q Consensus 12 ~i~l~s~DG~~~~v~~~~a-~~S~~l~~~l~~~~~~~~Ipl~~i~~~~L~~Ii~~~~~h~~~~~~~~~~~~~~~~wd~~F 90 (160)
.++|+. +|+.|.+++.++ ..|++++.|+... ...|.+++++..+++.+++|++...
T Consensus 29 Dv~l~v-~~~~~~aHk~vLaa~S~yF~~~f~~~--~~~i~l~~~~~~~f~~ll~~~Ytg~-------------------- 85 (119)
T 2q81_A 29 DCTFVV-DGVHFKAHKAVLAACSEYFKMLFVDQ--KDVVHLDISNAAGLGQVLEFMYTAK-------------------- 85 (119)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHHHHHC--CSGGGGGGCCHHHHHHHHHHHHHSC--------------------
T ss_pred ceEEEE-CCEEEehhHHHHHHcCHHHHHHHcCC--CCEEEeCCCCHHHHHHHHHHHcCCC--------------------
Confidence 466665 689999999985 5799999999863 5678898999999999999999632
Q ss_pred ccCCHHHHHHHHHhhhhcCchhHHHHHHHHHH
Q 044292 91 VKVDQETLLDLLLAANYLNIKDLLELTCQATA 122 (160)
Q Consensus 91 l~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia 122 (160)
+.++.+.+.+|+.||++|+++.|.+.|+.+++
T Consensus 86 ~~i~~~~~~~ll~~A~~l~i~~L~~~C~~~l~ 117 (119)
T 2q81_A 86 LSLSPENVDDVLAVATFLQMQDIITACHALKS 117 (119)
T ss_dssp CCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred CccCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 12455678999999999999999999999874
No 17
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=98.96 E-value=1e-09 Score=77.17 Aligned_cols=90 Identities=17% Similarity=0.332 Sum_probs=70.8
Q ss_pred cEEEEcCCCCEEEecHHHH-HHhHHHHHHHhhcCCCCccccC-CCCHHHHHHHHHHHHhchhhhhhccCCCCCccchhhh
Q 044292 12 MIILKSSDGETFEVEETVA-LQSQTIRHMVEDDCADSVIPLP-NVTGTILSMVVEYCKKHVEAAAAAAGGDNDVKNWDRD 89 (160)
Q Consensus 12 ~i~l~s~DG~~~~v~~~~a-~~S~~l~~~l~~~~~~~~Ipl~-~i~~~~L~~Ii~~~~~h~~~~~~~~~~~~~~~~wd~~ 89 (160)
.++|+. +|+.|.+++.++ ..|++++.|+... ....|.+| +++..+++.+++|++...
T Consensus 35 Dv~l~v-~~~~~~~Hk~vLaa~S~~F~~~f~~~-~~~~i~l~~~~~~~~f~~ll~~iYtg~------------------- 93 (129)
T 3ga1_A 35 DVSVVV-KGHAFKAHRAVLAASSSYFRDLFNNS-RSAVVELPAAVQPQSFQQILSFCYTGR------------------- 93 (129)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHBHHHHHHHHHC-CCSEEECCTTCCHHHHHHHHHHHHHSE-------------------
T ss_pred ceEEEE-CCEEEEehHHHHHHcCHHHHHHHcCC-CCCEEEECCCCCHHHHHHHHHHHhCCc-------------------
Confidence 466765 799999999985 5899999999876 46789998 899999999999998633
Q ss_pred hccCCHHHHHHHHHhhhhcCchhHHHHHHHHHHH
Q 044292 90 FVKVDQETLLDLLLAANYLNIKDLLELTCQATAD 123 (160)
Q Consensus 90 Fl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~ 123 (160)
+.++.+.+.+|+.||++|+|+.|.+.|+.++..
T Consensus 94 -~~i~~~~~~~ll~~A~~~~i~~l~~~C~~~L~~ 126 (129)
T 3ga1_A 94 -LSMNVGDQDLLMYTAGFLQIQEIMEKGTEFFLK 126 (129)
T ss_dssp -EECCTTTHHHHHHHHHHTTBTTSSCC-------
T ss_pred -cccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 134556789999999999999999999998865
No 18
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=98.94 E-value=8e-09 Score=72.16 Aligned_cols=91 Identities=15% Similarity=0.294 Sum_probs=75.6
Q ss_pred cEEEEcCCCCEEEecHHHH-HHhHHHHHHHhhcC--CCCcccc-CCCCHHHHHHHHHHHHhchhhhhhccCCCCCccchh
Q 044292 12 MIILKSSDGETFEVEETVA-LQSQTIRHMVEDDC--ADSVIPL-PNVTGTILSMVVEYCKKHVEAAAAAAGGDNDVKNWD 87 (160)
Q Consensus 12 ~i~l~s~DG~~~~v~~~~a-~~S~~l~~~l~~~~--~~~~Ipl-~~i~~~~L~~Ii~~~~~h~~~~~~~~~~~~~~~~wd 87 (160)
.++|+. +|+.|.+++.++ ..|++++.|+.... ....|.| ++++..+++.+++|++...
T Consensus 31 Dv~l~v-~~~~~~aHk~iLaa~S~~F~~~f~~~~~e~~~~i~l~~~~~~~~f~~ll~~~Ytg~----------------- 92 (127)
T 1r29_A 31 DVVIVV-SREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEINPEGFNILLDFMYTSR----------------- 92 (127)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHHHTSTTTTTCSEEECCTTSCHHHHHHHHHHHHHSC-----------------
T ss_pred CEEEEE-CCEEEehHHHHHHHhCHHHHHHhcCCccCCCCEEEeCCCCCHHHHHHHHHHHcCCC-----------------
Confidence 567765 589999999985 68999999998543 2567889 8999999999999998532
Q ss_pred hhhccCCHHHHHHHHHhhhhcCchhHHHHHHHHHHH
Q 044292 88 RDFVKVDQETLLDLLLAANYLNIKDLLELTCQATAD 123 (160)
Q Consensus 88 ~~Fl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~ 123 (160)
+.++.+.+.+|+.||++|+++.|.+.|..++..
T Consensus 93 ---~~~~~~~~~~ll~~A~~~~i~~L~~~c~~~l~~ 125 (127)
T 1r29_A 93 ---LNLREGNIMAVMATAMYLQMEHVVDTCRKFIKA 125 (127)
T ss_dssp ---CCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ---cCcCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 124567789999999999999999999998853
No 19
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=98.92 E-value=2.3e-09 Score=76.14 Aligned_cols=99 Identities=14% Similarity=0.169 Sum_probs=73.3
Q ss_pred cEEEEcCCCCEEEecHHHH-HHhHHHHHHHhhcC---CCCccccCCCCHHHHHHHHHHHHhchhhhhhccCCCCCccchh
Q 044292 12 MIILKSSDGETFEVEETVA-LQSQTIRHMVEDDC---ADSVIPLPNVTGTILSMVVEYCKKHVEAAAAAAGGDNDVKNWD 87 (160)
Q Consensus 12 ~i~l~s~DG~~~~v~~~~a-~~S~~l~~~l~~~~---~~~~Ipl~~i~~~~L~~Ii~~~~~h~~~~~~~~~~~~~~~~wd 87 (160)
.++|+. +|+.|.+++.++ ..|++++.|+.... ....|.+++++..+++.+++|++...-
T Consensus 27 Dv~l~v-~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~---------------- 89 (145)
T 4eoz_A 27 DCCLCV-AGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKA---------------- 89 (145)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHHHHSSSHHHHHTEEEECSSCHHHHHHHHHHHHHSCC----------------
T ss_pred ceEEEE-CCEEEEeehHHHHHcCHHHHHHHcCCCcCCCCceEEecCCCHHHHHHHHHhhccCcc----------------
Confidence 467765 689999999986 68999999997542 246899999999999999999996431
Q ss_pred hhhccCCHHHHHHHHHhhhhcCchhHHHHHHHHHHHHHhCCCHH
Q 044292 88 RDFVKVDQETLLDLLLAANYLNIKDLLELTCQATADVIKDKSPE 131 (160)
Q Consensus 88 ~~Fl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i~~kt~e 131 (160)
.++.+.+.+|+.+|++++++.|.+.|..++...+...+.-
T Consensus 90 ----~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~ 129 (145)
T 4eoz_A 90 ----PNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAA 129 (145)
T ss_dssp ----TTGGGTHHHHHHHHHHTTCHHHHHHHHCC-----------
T ss_pred ----CCcHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCHHHHH
Confidence 2344568899999999999999999999998776655443
No 20
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=98.90 E-value=5e-09 Score=75.19 Aligned_cols=89 Identities=22% Similarity=0.359 Sum_probs=73.6
Q ss_pred cEEEEcCCCCEEEecHHHH-HHhHHHHHHHhhcC-----CCCccccCCCCHHHHHHHHHHHHhchhhhhhccCCCCCccc
Q 044292 12 MIILKSSDGETFEVEETVA-LQSQTIRHMVEDDC-----ADSVIPLPNVTGTILSMVVEYCKKHVEAAAAAAGGDNDVKN 85 (160)
Q Consensus 12 ~i~l~s~DG~~~~v~~~~a-~~S~~l~~~l~~~~-----~~~~Ipl~~i~~~~L~~Ii~~~~~h~~~~~~~~~~~~~~~~ 85 (160)
.++|+. +|+.|.+++.++ ..|++++.|+.... ....|.|++++..+++.+++|++...
T Consensus 49 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~mf~~~~~e~e~~~~~I~l~~v~~~~f~~lL~fiYtg~--------------- 112 (144)
T 2ppi_A 49 DAHLVL-DGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQ--------------- 112 (144)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHHHHHCC-----CCCEEECCSSCHHHHHHHHHHHTTSC---------------
T ss_pred ceEEEE-CCEEEehHHHHHHHcCHHHHHHHcCCCccccCCCcEEEeCCCCHHHHHHHHHHHhCCC---------------
Confidence 466665 689999999985 58999999997642 35679999999999999999998422
Q ss_pred hhhhhccCCHHHHHHHHHhhhhcCchhHHHHHHHHH
Q 044292 86 WDRDFVKVDQETLLDLLLAANYLNIKDLLELTCQAT 121 (160)
Q Consensus 86 wd~~Fl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~i 121 (160)
+.++.+.+.+|+.||++|+++.|.+.|++++
T Consensus 113 -----~~i~~~~v~~ll~~A~~l~i~~L~~~C~~~L 143 (144)
T 2ppi_A 113 -----IRLNEDTIQDVVQAADLLLLTDLKTLCCEFL 143 (144)
T ss_dssp -----CCCCTTTHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred -----CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHh
Confidence 1245667899999999999999999998764
No 21
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=98.88 E-value=4e-09 Score=74.92 Aligned_cols=95 Identities=14% Similarity=0.222 Sum_probs=77.4
Q ss_pred cEEEEcCCCCEEEecHHHH-HHhHHHHHHHhhcC-CCCccccC-CCCHHHHHHHHHHHHhchhhhhhccCCCCCccchhh
Q 044292 12 MIILKSSDGETFEVEETVA-LQSQTIRHMVEDDC-ADSVIPLP-NVTGTILSMVVEYCKKHVEAAAAAAGGDNDVKNWDR 88 (160)
Q Consensus 12 ~i~l~s~DG~~~~v~~~~a-~~S~~l~~~l~~~~-~~~~Ipl~-~i~~~~L~~Ii~~~~~h~~~~~~~~~~~~~~~~wd~ 88 (160)
.++|+. +|+.|.+++.++ ..|++++.|+.... ....|.+| +++...++.+++|++...
T Consensus 38 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~~~i~l~~~v~~~~~~~lL~~~Ytg~------------------ 98 (138)
T 2z8h_A 38 DVTVLV-EGQRFRAHRSVLAACSSYFHSRIVGQTDAELTVTLPEEVTVKGFEPLIQFAYTAK------------------ 98 (138)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHHHTTCCCTTEEEECCTTSCHHHHHHHHHHHHHSC------------------
T ss_pred CeEEEE-CCEEEechHHHHHHcCHHHHHHHhcCCCCCceEEeCCCCCHHHHHHHHHHhcCCC------------------
Confidence 466665 589999999985 68999999998653 23568886 899999999999999632
Q ss_pred hhccCCHHHHHHHHHhhhhcCchhHHHHHHHHHHHHHhC
Q 044292 89 DFVKVDQETLLDLLLAANYLNIKDLLELTCQATADVIKD 127 (160)
Q Consensus 89 ~Fl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i~~ 127 (160)
+.++.+.+.+|+.||++|+++.|.+.|+.++...+..
T Consensus 99 --~~i~~~~v~~ll~~A~~~~i~~L~~~C~~~l~~~l~~ 135 (138)
T 2z8h_A 99 --LILSKDNVDEVCRCVEFLSVHNIEESCFQFLKFKFLD 135 (138)
T ss_dssp --CCCCTTTHHHHHHHHHHHTCGGGHHHHHHHTTCCCSC
T ss_pred --cccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccc
Confidence 1345567999999999999999999999998765543
No 22
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=98.78 E-value=1.6e-08 Score=78.60 Aligned_cols=100 Identities=21% Similarity=0.316 Sum_probs=76.6
Q ss_pred cEEEEcCCCCEEEecHHHHH-HhHHHHHHHhhcC-----CCCccccCCCCHHHHHHHHHHHHhchhhhhhccCCCCCccc
Q 044292 12 MIILKSSDGETFEVEETVAL-QSQTIRHMVEDDC-----ADSVIPLPNVTGTILSMVVEYCKKHVEAAAAAAGGDNDVKN 85 (160)
Q Consensus 12 ~i~l~s~DG~~~~v~~~~a~-~S~~l~~~l~~~~-----~~~~Ipl~~i~~~~L~~Ii~~~~~h~~~~~~~~~~~~~~~~ 85 (160)
.++|+. +|+.|.+++.++. .|++++.|+.... ....|++++++..+++.+++|++...
T Consensus 33 Dv~l~v-~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~~v~~~~f~~ll~~~Yt~~--------------- 96 (256)
T 3hve_A 33 DAHLVL-DGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQ--------------- 96 (256)
T ss_dssp CEEEEE-TTEEEEECHHHHHTTCHHHHHTC-----------CEEECSSCCHHHHHHHHHHHHHSC---------------
T ss_pred ceEEEE-CCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeCCCCHHHHHHHHhhccCCC---------------
Confidence 466665 6899999999865 7999999997532 34679999999999999999999633
Q ss_pred hhhhhccCCHHHHHHHHHhhhhcCchhHHHHHHHHHHHHHhCCCHHH
Q 044292 86 WDRDFVKVDQETLLDLLLAANYLNIKDLLELTCQATADVIKDKSPEE 132 (160)
Q Consensus 86 wd~~Fl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i~~kt~ee 132 (160)
+.++.+.+.+|+.||++|+++.|.+.|+.++...+.-.+.-.
T Consensus 97 -----~~i~~~~v~~ll~~A~~l~i~~l~~~c~~~L~~~l~~~n~~~ 138 (256)
T 3hve_A 97 -----IRLNEDTIQDVVQAADLLLLTDLKTLCCEFLEGCIAAENCIG 138 (256)
T ss_dssp -----CCCC-CCHHHHHHHHHHHTCHHHHHHHHHHHHHTCCSSTTHH
T ss_pred -----CcccHhHHHHHHHHHHHHChHHHHHHHHHHHHhhCCHhhHHH
Confidence 124556789999999999999999999999887766554333
No 23
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=98.77 E-value=1.2e-08 Score=80.28 Aligned_cols=102 Identities=13% Similarity=0.152 Sum_probs=78.5
Q ss_pred cEEEEcC--CCCEEEecHHHH-HHhHHHHHHHhhcC---CCCccccC------CCCHHHHHHHHHHHHhchhhhhhccCC
Q 044292 12 MIILKSS--DGETFEVEETVA-LQSQTIRHMVEDDC---ADSVIPLP------NVTGTILSMVVEYCKKHVEAAAAAAGG 79 (160)
Q Consensus 12 ~i~l~s~--DG~~~~v~~~~a-~~S~~l~~~l~~~~---~~~~Ipl~------~i~~~~L~~Ii~~~~~h~~~~~~~~~~ 79 (160)
.++|+.. ||+.|.+++.++ ..|++++.|+...- ....|.++ +++..+++.+++|++...-
T Consensus 34 Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~~~~f~~ll~~~Ytg~~-------- 105 (279)
T 3i3n_A 34 DITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGRI-------- 105 (279)
T ss_dssp CEEEECC----CEEEECHHHHHHHCTTSGGGCCC--------EEECCCCSSTTCSCHHHHHHHHHHHHHSEE--------
T ss_pred CeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccccCCeEEeccccccCCCCHHHHHHHHHhhCcCCc--------
Confidence 4777765 799999999985 57999999997542 34678888 8999999999999996331
Q ss_pred CCCccchhhhhccCCHHHHHHHHHhhhhcCchhHHHHHHHHHHHHHhCCCHHHH
Q 044292 80 DNDVKNWDRDFVKVDQETLLDLLLAANYLNIKDLLELTCQATADVIKDKSPEEV 133 (160)
Q Consensus 80 ~~~~~~wd~~Fl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i~~kt~eei 133 (160)
.++.+.+.+|+.||++|+++.|.+.|+.++...+...+.-.+
T Consensus 106 ------------~i~~~~v~~ll~~A~~l~i~~L~~~c~~~L~~~l~~~n~~~i 147 (279)
T 3i3n_A 106 ------------RVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAI 147 (279)
T ss_dssp ------------EEETTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTTHHHH
T ss_pred ------------ccCHHHHHHHHHHHHHHCcHHHHHHHHHHHHHcCCcchHHHH
Confidence 234456889999999999999999999999887776665544
No 24
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=98.76 E-value=2e-09 Score=75.13 Aligned_cols=88 Identities=16% Similarity=0.278 Sum_probs=72.0
Q ss_pred cEEEEcCCCCEEEecHHHH-HHhHHHHHHHhhcC-CCCccccCC-CCHHHHHHHHHHHHhchhhhhhccCCCCCccchhh
Q 044292 12 MIILKSSDGETFEVEETVA-LQSQTIRHMVEDDC-ADSVIPLPN-VTGTILSMVVEYCKKHVEAAAAAAGGDNDVKNWDR 88 (160)
Q Consensus 12 ~i~l~s~DG~~~~v~~~~a-~~S~~l~~~l~~~~-~~~~Ipl~~-i~~~~L~~Ii~~~~~h~~~~~~~~~~~~~~~~wd~ 88 (160)
.++|+. +|+.|.+++.++ ..|++++.|+.... ....|.+++ ++..+++.+++|++...
T Consensus 34 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~~~i~l~~~~~~~~f~~~l~~iYtg~------------------ 94 (125)
T 3ohu_A 34 DVTLIV-ERKEFRAHRAVLAACSEYFWQALVGQTKNDLVVSLPEEVTARGFGPLLQFAYTAK------------------ 94 (125)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHBHHHHHHHTTCCCSSCEEECCTTCCHHHHHHHHHHHTTSE------------------
T ss_pred ceEEEE-CCEEEechHHHHHHcCHHHHHHhcCCCCCCcEEEeCCCCCHHHHHHHHHhHcCCc------------------
Confidence 467765 689999999985 58999999998653 356788997 99999999999998532
Q ss_pred hhccCCHHHHHHHHHhhhhcCchhHHHHHHHH
Q 044292 89 DFVKVDQETLLDLLLAANYLNIKDLLELTCQA 120 (160)
Q Consensus 89 ~Fl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ 120 (160)
+.++.+.+.+|+.||++|+++.|.+.|+++
T Consensus 95 --~~~~~~~v~~ll~~A~~l~i~~L~~~C~~~ 124 (125)
T 3ohu_A 95 --LLLSRENIREVIRCAEFLRMHNLEDSCFSF 124 (125)
T ss_dssp --EEECTTTHHHHHHHHHHHTBSSCTTSSCCC
T ss_pred --eEECHHHHHHHHHHHHHhCCHHHHHHHHHh
Confidence 134566789999999999999999988754
No 25
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=98.70 E-value=1.2e-07 Score=75.50 Aligned_cols=102 Identities=15% Similarity=0.179 Sum_probs=82.4
Q ss_pred cEEEEcCCCCEEEecHHHH-HHhHHHHHHHhhcC---CCCccccCCCCHHHHHHHHHHHHhchhhhhhccCCCCCccchh
Q 044292 12 MIILKSSDGETFEVEETVA-LQSQTIRHMVEDDC---ADSVIPLPNVTGTILSMVVEYCKKHVEAAAAAAGGDNDVKNWD 87 (160)
Q Consensus 12 ~i~l~s~DG~~~~v~~~~a-~~S~~l~~~l~~~~---~~~~Ipl~~i~~~~L~~Ii~~~~~h~~~~~~~~~~~~~~~~wd 87 (160)
.++|+. +|+.|.+++.++ ..|++++.|+...- ....|.|++++..+++.+++|++...-
T Consensus 176 Dv~l~v-~~~~f~~Hk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt~~~---------------- 238 (312)
T 3hqi_A 176 DCCLCV-AGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKA---------------- 238 (312)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHHTTC-----CCSEEEECSSCHHHHHHHHHHHHHSCC----------------
T ss_pred ceEEEE-CCEEEeHHHHHHHHcCHHHHHHhccCccccCCceEEecCCCHHHHHHHHHhhcCCCC----------------
Confidence 566766 789999999985 68999999997532 357899999999999999999986321
Q ss_pred hhhccCCHHHHHHHHHhhhhcCchhHHHHHHHHHHHHHhCCCHHHHH
Q 044292 88 RDFVKVDQETLLDLLLAANYLNIKDLLELTCQATADVIKDKSPEEVR 134 (160)
Q Consensus 88 ~~Fl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i~~kt~eeir 134 (160)
.++.+.+.+|+.||++++++.|...|..++...+...++-++.
T Consensus 239 ----~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~n~~~~l 281 (312)
T 3hqi_A 239 ----PNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEIL 281 (312)
T ss_dssp ----TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTTHHHHH
T ss_pred ----CChHHHHHHHHHHHHHhCHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 1234789999999999999999999999998777666665543
No 26
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=98.66 E-value=1.2e-08 Score=71.09 Aligned_cols=85 Identities=16% Similarity=0.176 Sum_probs=69.4
Q ss_pred cEEEEcCCCCEEEecHHHH-HHhHHHHHHHhhcCCCCccccCCCCHHHHHHHHHHHHhchhhhhhccCCCCCccchhhhh
Q 044292 12 MIILKSSDGETFEVEETVA-LQSQTIRHMVEDDCADSVIPLPNVTGTILSMVVEYCKKHVEAAAAAAGGDNDVKNWDRDF 90 (160)
Q Consensus 12 ~i~l~s~DG~~~~v~~~~a-~~S~~l~~~l~~~~~~~~Ipl~~i~~~~L~~Ii~~~~~h~~~~~~~~~~~~~~~~wd~~F 90 (160)
.++|+. +|+.|.+++.++ ..|.+++. ....|.+++++..+++.+++|++...
T Consensus 32 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~------~~~~i~l~~v~~~~f~~ll~fiYtg~-------------------- 84 (119)
T 3m5b_A 32 DTLITV-GSQEFPAHSLVLAGVSQQLGR------RGQWALGEGISPSTFAQLLNFVYGES-------------------- 84 (119)
T ss_dssp CEEEEE-TTEEEEECHHHHHTTCGGGCC------CEEEECCSSCCHHHHHHHHHHHTTCC--------------------
T ss_pred ceEEEE-CCEEEeeEHHHHHHcCHHHhc------CCCEEEeCCCCHHHHHHHHHHHcCCC--------------------
Confidence 466765 699999999985 57999874 24578999999999999999998522
Q ss_pred ccCCHHHHHHHHHhhhhcCchhHHHHHHHHHHH
Q 044292 91 VKVDQETLLDLLLAANYLNIKDLLELTCQATAD 123 (160)
Q Consensus 91 l~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~ 123 (160)
+.++.+.+.+|+.||++|+|+.|.+.|++++..
T Consensus 85 ~~i~~~~v~~ll~aA~~l~i~~l~~~C~~~~~~ 117 (119)
T 3m5b_A 85 VELQPGELRPLQEAARALGVQSLEEACWRARGD 117 (119)
T ss_dssp EEECGGGHHHHHHHHHHTTCHHHHHHHHHHC--
T ss_pred cCcCHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 235677899999999999999999999998754
No 27
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=98.65 E-value=9.2e-08 Score=66.00 Aligned_cols=82 Identities=13% Similarity=0.246 Sum_probs=68.5
Q ss_pred cEEEEcCCCCEEEecHHHH-HHhHHHHHHHhhcCCCCccccCCCCHHHHHHHHHHHHhchhhhhhccCCCCCccchhhhh
Q 044292 12 MIILKSSDGETFEVEETVA-LQSQTIRHMVEDDCADSVIPLPNVTGTILSMVVEYCKKHVEAAAAAAGGDNDVKNWDRDF 90 (160)
Q Consensus 12 ~i~l~s~DG~~~~v~~~~a-~~S~~l~~~l~~~~~~~~Ipl~~i~~~~L~~Ii~~~~~h~~~~~~~~~~~~~~~~wd~~F 90 (160)
.++|+. +|+.|.+++.++ ..|++++.++... ...|.+++++..+++.+++|++...- +
T Consensus 33 Dv~l~v-~~~~f~aHk~vLaa~S~~F~~~f~~~--~~~i~l~~~~~~~f~~~l~~~Ytg~~------------~------ 91 (116)
T 3fkc_A 33 DVTVIV-EDRKFRAHKNILSASSTYFHQLFSVA--GQVVELSFIRAEIFAEILNYIYSSKI------------V------ 91 (116)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHHTTSC--CSEEEECSSCHHHHHHHHHHHTTSCC------------C------
T ss_pred eEEEEE-CCEEEehhHHHHHHcCHHHHHHHcCC--CCEEEeCCCCHHHHHHHHHhhcCCCc------------C------
Confidence 466665 689999999985 6899999999764 67899999999999999999985221 0
Q ss_pred ccCCHHHHHHHHHhhhhcCchhHHH
Q 044292 91 VKVDQETLLDLLLAANYLNIKDLLE 115 (160)
Q Consensus 91 l~~~~~~l~~Ll~AA~~L~I~~L~~ 115 (160)
.++.+.+.+|+.||++|+|+.|.+
T Consensus 92 -~~~~~~~~~ll~~A~~l~i~~L~~ 115 (116)
T 3fkc_A 92 -RVRSDLLDELIKSGQLLGVKFIAA 115 (116)
T ss_dssp -SCCHHHHHHHHHHHHHHTCHHHHT
T ss_pred -CCCHHHHHHHHHHHHHhCccccCc
Confidence 367788999999999999999875
No 28
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=98.63 E-value=1.2e-08 Score=71.10 Aligned_cols=89 Identities=15% Similarity=0.225 Sum_probs=71.5
Q ss_pred cEEEEcCCCCEEEecHHHH-HHhHHHHHHHhhcC-CCCccccC-CCCHHHHHHHHHHHHhchhhhhhccCCCCCccchhh
Q 044292 12 MIILKSSDGETFEVEETVA-LQSQTIRHMVEDDC-ADSVIPLP-NVTGTILSMVVEYCKKHVEAAAAAAGGDNDVKNWDR 88 (160)
Q Consensus 12 ~i~l~s~DG~~~~v~~~~a-~~S~~l~~~l~~~~-~~~~Ipl~-~i~~~~L~~Ii~~~~~h~~~~~~~~~~~~~~~~wd~ 88 (160)
.++|+. +|+.|.+++.++ ..|++++.|+.... ....|.+| +++...++.+++|++...-
T Consensus 31 Dv~l~v-~~~~~~aHk~vLaa~S~yF~~mf~~~~~e~~~i~l~~~v~~~~f~~lL~~iYtg~~----------------- 92 (124)
T 2ihc_A 31 DVTIFV-EGQRFRAHRSVLAACSSYFHSRIVGQADGELNITLPEEVTVKGFEPLIQFAYTAKL----------------- 92 (124)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHBHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHHSEE-----------------
T ss_pred CEEEEE-CCEEEecHHHHHHHcCHHHHHHHcCCCCCCceEeecCCcCHHHHHHHHHHhcCCCc-----------------
Confidence 466665 589999999985 58999999998643 23568886 8999999999999996331
Q ss_pred hhccCCHHHHHHHHHhhhhcCchhHHHHHHHHH
Q 044292 89 DFVKVDQETLLDLLLAANYLNIKDLLELTCQAT 121 (160)
Q Consensus 89 ~Fl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~i 121 (160)
.++.+.+.+|+.||++|+++.|.+.|+.++
T Consensus 93 ---~i~~~~v~~ll~~A~~~~~~~L~~~C~~~l 122 (124)
T 2ihc_A 93 ---ILSKENVDEVCKCVEFLSVHNIEESCFQFL 122 (124)
T ss_dssp ---EEETTTHHHHHHHHHHHTBSSCCGGGGGTC
T ss_pred ---ccCHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 234566899999999999999999998765
No 29
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=94.15 E-value=0.5 Score=31.47 Aligned_cols=93 Identities=15% Similarity=0.229 Sum_probs=64.5
Q ss_pred CccEEEEcCCCCEEEecHHHHHHh--HHHHHHHhhc-------CCCCccccCCCCHHHHHHHHHHHHhchhhhhhccCCC
Q 044292 10 KKMIILKSSDGETFEVEETVALQS--QTIRHMVEDD-------CADSVIPLPNVTGTILSMVVEYCKKHVEAAAAAAGGD 80 (160)
Q Consensus 10 ~~~i~l~s~DG~~~~v~~~~a~~S--~~l~~~l~~~-------~~~~~Ipl~~i~~~~L~~Ii~~~~~h~~~~~~~~~~~ 80 (160)
++.|+|-- .|+.|..+...+..- .+|..|+... ...+.+-+ +-++..++.|+.|+...+-.
T Consensus 5 ~~~v~LNV-GG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~d~~~~~fi-DRdp~~F~~IL~~lr~g~l~-------- 74 (107)
T 3drz_A 5 SKWVRLNV-GGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-DRDPTYFGPVLNYLRHGKLV-------- 74 (107)
T ss_dssp CCEEEEEE-TTEEEEEEHHHHTSSTTSHHHHHHTTCGGGGGGBCTTSCEEE-CSCHHHHHHHHHHHHHSCCC--------
T ss_pred CCEEEEEE-CCEEEEECHHHHhcCCCcchhHHHhcCCCCCcCCCCCceEEe-cCChHHHHHHHHHhCCCeeC--------
Confidence 34566654 499999999987542 4677776532 12344555 88999999999999974311
Q ss_pred CCccchhhhhccCCHHHHHHHHHhhhhcCchhHHHHHHHHHHH
Q 044292 81 NDVKNWDRDFVKVDQETLLDLLLAANYLNIKDLLELTCQATAD 123 (160)
Q Consensus 81 ~~~~~wd~~Fl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~ 123 (160)
+++ ++. ...++..|.|.+|.+|++.|-..|.+
T Consensus 75 --~p~------~~~---~~~l~~Ea~fy~l~~L~~~l~~~i~~ 106 (107)
T 3drz_A 75 --INK------DLA---EEGVLEEAEFYNITSLIKLVKDKIRE 106 (107)
T ss_dssp --CCT------TSC---HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred --CCC------CCC---HHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 111 122 24678999999999999999887754
No 30
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=88.17 E-value=0.93 Score=33.94 Aligned_cols=101 Identities=14% Similarity=0.218 Sum_probs=67.1
Q ss_pred CCCCCCCCCccEEEEcCCCCEEEecHHHHHHh--HHHHHHHhhcC-------CCCccccCCCCHHHHHHHHHHHHhchhh
Q 044292 2 SSSSENNSKKMIILKSSDGETFEVEETVALQS--QTIRHMVEDDC-------ADSVIPLPNVTGTILSMVVEYCKKHVEA 72 (160)
Q Consensus 2 ~~~~~~~~~~~i~l~s~DG~~~~v~~~~a~~S--~~l~~~l~~~~-------~~~~Ipl~~i~~~~L~~Ii~~~~~h~~~ 72 (160)
|+.++-. ++.|+|-- .|+.|..+...+..- .+|..|+.... ..+.+-+ +-++..++.|+.|++..+-.
T Consensus 4 ~~~~g~~-~~~V~LNV-GG~~F~Tt~sTL~r~PdS~L~~lfs~~~~~~~~~De~geyFI-DRDP~~F~~ILnyLRtG~L~ 80 (202)
T 3drx_A 4 AQRPGSV-SKWVRLNV-GGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-DRDPTYFGPVLNYLRHGKLV 80 (202)
T ss_dssp TSCSSCC-CCEEEEEE-TTEEEEEETTGGGSCTTSSTHHHHSCCCC----BCTTCCEEE-CSCSTTHHHHHHHHHHSCCC
T ss_pred ccCCCCC-CCEEEEEE-CCEEEEEeHHHHhCCCcchHHHHhcCccccCcccCCCccEEe-cCChHHHHHHHHHhcCCccC
Confidence 4444443 35666654 499999998876542 35666664321 1344545 77899999999999964311
Q ss_pred hhhccCCCCCccchhhhhccCCHHHHHHHHHhhhhcCchhHHHHHHHHHHHH
Q 044292 73 AAAAAGGDNDVKNWDRDFVKVDQETLLDLLLAANYLNIKDLLELTCQATADV 124 (160)
Q Consensus 73 ~~~~~~~~~~~~~wd~~Fl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~ 124 (160)
+++ ++.. ..|+..|.|.+|.+|++.|-..+..+
T Consensus 81 ----------lP~------~~~~---~~l~eEA~FygL~~Lv~~l~~~i~er 113 (202)
T 3drx_A 81 ----------INK------DLAE---EGVLEEAEFYNITSLIKLVKDKIRER 113 (202)
T ss_dssp ----------CCT------TSCH---HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----------CCC------CCCH---HHHHHHHHHCCcHHHHHHHHHHHHHH
Confidence 111 1222 35889999999999999999988754
No 31
>2xf7_A GP23.1; viral protein; 1.61A {Bacillus phage SPP1} PDB: 2xf5_A 2xf6_A
Probab=79.57 E-value=2.3 Score=24.00 Aligned_cols=36 Identities=22% Similarity=0.336 Sum_probs=28.0
Q ss_pred HHHHHHhCC-CHHHHHHHcCCCCCCCHHHHHHHHHhccc
Q 044292 120 ATADVIKDK-SPEEVRRIFHINNDFTPQEEQEIRRENQW 157 (160)
Q Consensus 120 ~ia~~i~~k-t~eeir~~f~i~~d~t~eee~~~~~e~~w 157 (160)
+.-++..|. +.+++|+..+- .++|++|-.+| .++||
T Consensus 10 F~D~W~~GT~~~~~mR~AV~~-G~iTQ~E~D~I-~~ypw 46 (51)
T 2xf7_A 10 FLDSWLDGTASEELLRVAVNA-GDLTQEEADKI-MSYPW 46 (51)
T ss_dssp HHHHHHHTCCCHHHHHHHHHH-TSSCHHHHHHH-HTSCT
T ss_pred HHHHHhcchhhHHHHHHHHhc-CcccHHHHHHH-HhCcc
Confidence 345677774 78899987763 57999999988 78888
No 32
>3tnt_A SARS coronavirus main protease; 3C-like protease, hydrolase-hydrolase inhibitor CO; HET: G85; 1.59A {Sars coronavirus} PDB: 1uk2_A 1uk3_A 1uk4_A 1z1i_A 2a5a_A 1uj1_A* 2bx3_A 2bx4_A 2c3s_A 2a5i_A 2gt7_A* 2gx4_A* 2gz7_A* 2gz8_A* 2gz9_A 2duc_A 2hob_A* 2v6n_A* 2z3c_A* 2z3d_A* ...
Probab=74.25 E-value=2.5 Score=33.15 Aligned_cols=99 Identities=14% Similarity=0.134 Sum_probs=65.4
Q ss_pred CccccCCCCHHHHHHHHHHHHhchhhhh-h----ccCCCCCccch--hhhhccCCHH--HHHHHHHhhhhcCchhHHHHH
Q 044292 47 SVIPLPNVTGTILSMVVEYCKKHVEAAA-A----AAGGDNDVKNW--DRDFVKVDQE--TLLDLLLAANYLNIKDLLELT 117 (160)
Q Consensus 47 ~~Ipl~~i~~~~L~~Ii~~~~~h~~~~~-~----~~~~~~~~~~w--d~~Fl~~~~~--~l~~Ll~AA~~L~I~~L~~~~ 117 (160)
+...++.-+.-.-..|+.|++-+--... . ...+.+.+.+| ...|-....+ +.+..+.|..=-.+..|+...
T Consensus 189 ~~~Q~~~~d~~~T~NVvAwLYAAilng~~Wfl~~~~~sv~dfN~WA~~ngft~~~~~~~~~~~~Laa~TGVsVe~lL~aI 268 (306)
T 3tnt_A 189 QTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAAL 268 (306)
T ss_dssp SSCCCCCCCCBCHHHHHHHHHHHHHTTCCTTCCSCCCCHHHHHHHHHHTTBCCCCHHHHHHTHHHHHHHTCCHHHHHHHH
T ss_pred hhhhccCccceeehhHHHHHHHHHhcCCeEEeeccEecHHHHHHHHHhcCCccccccHHHHHHHHHHHhCCCHHHHHHHH
Confidence 3344555555566789999987643221 1 11233445566 3345445554 468999999999999998887
Q ss_pred HHHHHHHHhCCCHHHHHHHcCCCCCCCHHHH
Q 044292 118 CQATADVIKDKSPEEVRRIFHINNDFTPQEE 148 (160)
Q Consensus 118 ~~~ia~~i~~kt~eeir~~f~i~~d~t~eee 148 (160)
-+.+..=+.|++ |.-...++++|||+|.
T Consensus 269 ~~ll~~g~~G~~---IlG~~~leDE~Tp~~V 296 (306)
T 3tnt_A 269 KELLQNGMNGRT---ILGSTILEDEFTPFDV 296 (306)
T ss_dssp HHHHHHCCTTCC---BTTBSSCCCSCCHHHH
T ss_pred HHHHhcCcCCce---eeccccccccCCHHHH
Confidence 777776667887 5666668888999775
No 33
>3d23_B 3C-like proteinase; main protease, ATP-binding, endonuclease, exonuclease, helic hydrolase, membrane, metal-binding, nuclease; HET: 3IH; 2.50A {Human coronavirus}
Probab=60.35 E-value=3.8 Score=32.03 Aligned_cols=99 Identities=15% Similarity=0.226 Sum_probs=63.7
Q ss_pred CccccCCCCHHHHHHHHHHHHhchhhhh-h----ccCCCCCccch--hhhhccCCHHHHHHHHHhhhhcCchhHHHHHHH
Q 044292 47 SVIPLPNVTGTILSMVVEYCKKHVEAAA-A----AAGGDNDVKNW--DRDFVKVDQETLLDLLLAANYLNIKDLLELTCQ 119 (160)
Q Consensus 47 ~~Ipl~~i~~~~L~~Ii~~~~~h~~~~~-~----~~~~~~~~~~w--d~~Fl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~ 119 (160)
+...++..+.-.-..|+.|++-+--... . ...+.+.+.+| ...|-.+.....++.+.|..=..+..|+...-+
T Consensus 191 ~~~Q~~~~d~~~T~NVvA~LYAAilng~~Wf~~~~~~s~~~fN~WA~~ngft~~~~~~~~~~Laa~TgVsVe~lLaaI~~ 270 (302)
T 3d23_B 191 QVVQLPVKDYVQTVNVIAWLYAAILNNCAWFVQNDVCSTEDFNVWAMANGFSQVKADLVLDALASMTGVSIETLLAAIKR 270 (302)
T ss_dssp SSCCCCCCCCBCHHHHHHHHHHHHHTTCCTTCCSCCCCHHHHHHHHHHHTBCCCCCCHHHHHHHHHHSCCHHHHHHHHHH
T ss_pred hhhhccCccceeehhHHHHHHHHHHcCCceeeccceecHHHHHHHHHhCCcccccchhHHHHHHHHhCCcHHHHHHHHHH
Confidence 3445655555666789999987654322 1 11234455667 444555666778999999999999998865544
Q ss_pred HHHHHHhCCCHHHHHHHcCCCCCCCHHHHH
Q 044292 120 ATADVIKDKSPEEVRRIFHINNDFTPQEEQ 149 (160)
Q Consensus 120 ~ia~~i~~kt~eeir~~f~i~~d~t~eee~ 149 (160)
. +.-+.||+ |.-...++++|||++.-
T Consensus 271 L-~~gf~G~~---IlG~~~leDE~Tp~~V~ 296 (302)
T 3d23_B 271 L-YMGFQGRQ---ILGSCTFEDELAPSDVY 296 (302)
T ss_dssp H-HTCCTTCC---BTTBSSCCCSSCHHHHH
T ss_pred H-hcCCCCce---eeccccccccCCHHHHH
Confidence 3 54445555 44455577889998753
No 34
>3tlo_A 3CL-Pro, 3CLP, 3C-like proteinase; hydrolysis, hydrolase, protein binding; 1.60A {Human coronavirus} PDB: 2zu2_A 1p9s_A
Probab=56.59 E-value=2.6 Score=33.03 Aligned_cols=99 Identities=12% Similarity=0.173 Sum_probs=63.7
Q ss_pred CccccCCCCHHHHHHHHHHHHhchhhhhh-----ccCCCCCccch--hhhhccCCHHHHHHHHHhhhhcCchhHHHHHHH
Q 044292 47 SVIPLPNVTGTILSMVVEYCKKHVEAAAA-----AAGGDNDVKNW--DRDFVKVDQETLLDLLLAANYLNIKDLLELTCQ 119 (160)
Q Consensus 47 ~~Ipl~~i~~~~L~~Ii~~~~~h~~~~~~-----~~~~~~~~~~w--d~~Fl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~ 119 (160)
+...++.-+.-.-..|+.|++-+--+..+ ...+.+.+.+| +..|-.......+++|.|..=.++..|+...-+
T Consensus 189 ~v~Q~~~~d~~~T~NVvAwLYAAilng~~wfl~~~~~sv~dfN~WA~~ngft~~~~~~~~~~Laa~TGVsV~~lL~aI~~ 268 (303)
T 3tlo_A 189 PSLQVESANLMLSDNVVAFLYAALLNGCRWWLCSTRVNVDGFNEWAMANGYTSVSSVECYSILAAKTGVSVEQLLASIQH 268 (303)
T ss_dssp SCCCCCCCCCBCHHHHHHHHHHHHHTTCCTTCCCCCCCHHHHHHHHHHHTBCCCCCSGGGHHHHHHHTCCHHHHHHHHHH
T ss_pred hhhcccCccceeehhHHHHHHHHHHcCCCeeeccceecHHHHHHHHHhcCccccccchHHHHHHHHhCCcHHHHHHHHHH
Confidence 33445555555667899999876543221 11234455667 444555666688999999999999998876654
Q ss_pred HHHHHHhCCCHHHHHHHcCCCCCCCHHHHH
Q 044292 120 ATADVIKDKSPEEVRRIFHINNDFTPQEEQ 149 (160)
Q Consensus 120 ~ia~~i~~kt~eeir~~f~i~~d~t~eee~ 149 (160)
++.-+.|++ |.-...++++|||+|.-
T Consensus 269 -L~~g~~G~~---IlG~~~leDE~Tp~~V~ 294 (303)
T 3tlo_A 269 -LHEGFGGKN---ILGYSSLCDEFTLAEVV 294 (303)
T ss_dssp -HTTCCTTCC---BTTBSSCCCCCCHHHHH
T ss_pred -HhcCCCCce---ecccccccccCCHHHHH
Confidence 555445555 45555688889998753
No 35
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=55.75 E-value=22 Score=23.09 Aligned_cols=35 Identities=11% Similarity=0.452 Sum_probs=26.7
Q ss_pred HHHHHHHhCCCHHHHHHHcC------CC-CCCCHHHHHHHHH
Q 044292 119 QATADVIKDKSPEEVRRIFH------IN-NDFTPQEEQEIRR 153 (160)
Q Consensus 119 ~~ia~~i~~kt~eeir~~f~------i~-~d~t~eee~~~~~ 153 (160)
..||..+.|+|+.+.|+.+. +. ..+|+||.+.+..
T Consensus 25 ~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~ 66 (107)
T 2k9n_A 25 IRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQ 66 (107)
T ss_dssp HHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHH
T ss_pred HHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHH
Confidence 46788888999999998642 33 3599999887765
No 36
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=51.62 E-value=10 Score=25.83 Aligned_cols=89 Identities=10% Similarity=0.117 Sum_probs=55.8
Q ss_pred CccEEEEcCCCCEEEecHHHHHHh--HHHHHHHhhc----CCCCccccCCCCHHHHHHHHHHHHhchhhhhhccCCCCCc
Q 044292 10 KKMIILKSSDGETFEVEETVALQS--QTIRHMVEDD----CADSVIPLPNVTGTILSMVVEYCKKHVEAAAAAAGGDNDV 83 (160)
Q Consensus 10 ~~~i~l~s~DG~~~~v~~~~a~~S--~~l~~~l~~~----~~~~~Ipl~~i~~~~L~~Ii~~~~~h~~~~~~~~~~~~~~ 83 (160)
+..|+| --.|+.|.++...+..- ..|.. .... ...+.+-+ +=++..++.|+.|+...+-. +
T Consensus 12 ~~~V~L-NVGG~~F~t~~~TL~~~p~S~L~~-~~~~~~~~~~~g~~Fi-DRdp~~F~~ILnflR~G~l~----------~ 78 (124)
T 1s1g_A 12 DELIVL-NVSGRRFQTWRTTLERYPDTLLGS-TEKEFFFNEDTKEYFF-DRDPEVFRCVLNFYRTGKLH----------Y 78 (124)
T ss_dssp CCEEEE-EETTEEEEEEHHHHTTSTTSSTTS-SGGGGTBCSSSCSEEE-CSCHHHHHHHHHHHHHSCBC----------C
T ss_pred CCEEEE-EeCCEEEEEeHHHHhcCCCceecc-cCCcccccCCCCcEEE-cCChHHHHHHHHHHhcCCCC----------C
Confidence 334544 45599999999876431 11111 0000 12345555 77999999999999874311 1
Q ss_pred cchhhhhccCCHHHHHHHHHhhhhcCchhHH-HHHHHH
Q 044292 84 KNWDRDFVKVDQETLLDLLLAANYLNIKDLL-ELTCQA 120 (160)
Q Consensus 84 ~~wd~~Fl~~~~~~l~~Ll~AA~~L~I~~L~-~~~~~~ 120 (160)
++ ++ .+..|+..|.|.+|.+|+ +.||..
T Consensus 79 p~------~~---~~~~l~~Ea~fy~i~~l~l~~cC~~ 107 (124)
T 1s1g_A 79 PR------YE---CISAYDDELAFYGILPEIIGDCCYE 107 (124)
T ss_dssp CT------TS---CHHHHHHHHHHTTCCGGGBCHHHHH
T ss_pred CC------Cc---CHHHHHHHHHHcCCChHHHHHHHHH
Confidence 11 12 257789999999999984 777753
No 37
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=51.53 E-value=17 Score=23.40 Aligned_cols=36 Identities=19% Similarity=0.392 Sum_probs=27.1
Q ss_pred HHHHHHHhCCCHHHHHHHcC------CC-CCCCHHHHHHHHHh
Q 044292 119 QATADVIKDKSPEEVRRIFH------IN-NDFTPQEEQEIRRE 154 (160)
Q Consensus 119 ~~ia~~i~~kt~eeir~~f~------i~-~d~t~eee~~~~~e 154 (160)
..||..+.|+|..+.|..+. +. ..+|+||.+.+...
T Consensus 28 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~ 70 (105)
T 1gv2_A 28 SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQA 70 (105)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHH
T ss_pred HHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHH
Confidence 46788888999999998653 22 35999998877653
No 38
>2q6f_A Fragment, infectious bronchitis virus (IBV) main protease; coronavirus, 3C-like proteinase, michael acceptor inhibitor, hydrolase; HET: 3IH; 2.00A {Infectious bronchitis virus} PDB: 2q6d_A*
Probab=51.46 E-value=8.1 Score=30.28 Aligned_cols=98 Identities=13% Similarity=0.203 Sum_probs=62.9
Q ss_pred CccccCCCCHHHHHHHHHHHHhchhhh--------hh---ccCCCCCccch--hhhhccCCHHHHHHHHHhhhhcCchhH
Q 044292 47 SVIPLPNVTGTILSMVVEYCKKHVEAA--------AA---AAGGDNDVKNW--DRDFVKVDQETLLDLLLAANYLNIKDL 113 (160)
Q Consensus 47 ~~Ipl~~i~~~~L~~Ii~~~~~h~~~~--------~~---~~~~~~~~~~w--d~~Fl~~~~~~l~~Ll~AA~~L~I~~L 113 (160)
+...++..+.-.-..|+.|++-+--.. -. ...+...+.+| ...|-.......++.+.|..=..+..|
T Consensus 189 ~~~Q~~~~~~~~T~NVvA~LYAAllng~~~~~~~~~Wl~~~~~s~e~fN~WA~~ngft~~~~~~~~~~Laa~TGVsVe~l 268 (309)
T 2q6f_A 189 EVAQRVPPDNLVTNNIVAWLYAAIISVKESSFSQPKWLESTTVSIEDYNRWASDNGFTPFSTSTAITKLSAITGVDVCKL 268 (309)
T ss_dssp SSCCCCCCCCBCHHHHHHHHHHHHHHC-------CTTSCSSCCCHHHHHHHHHHHTBCCCCCCHHHHHHHHHHTCCHHHH
T ss_pred hhhhccCcceeeehhHHHHHHHHHHcCcccccccccccccceecHHHHHHHHHhCCCcccchhhHHHHHHHHhCCcHHHH
Confidence 344555555556678999998764432 10 01223445566 344555666789999999999999888
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHcCCCCCCCHHHH
Q 044292 114 LELTCQATADVIKDKSPEEVRRIFHINNDFTPQEE 148 (160)
Q Consensus 114 ~~~~~~~ia~~i~~kt~eeir~~f~i~~d~t~eee 148 (160)
+...- .++.-+.|++ |.-...++++|||++.
T Consensus 269 L~aI~-~L~~gf~G~~---IlG~~~leDE~Tp~~V 299 (309)
T 2q6f_A 269 LRTIM-VKSAQWGSDP---ILGQYNFEDELTPESV 299 (309)
T ss_dssp HHHHH-HHHHCCCSCC---BTTBSSCCCSCCHHHH
T ss_pred HHHHH-HHhcCCCCce---ecccccccccCCHHHH
Confidence 87654 5555556666 3444557788999875
No 39
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=50.51 E-value=25 Score=23.54 Aligned_cols=36 Identities=19% Similarity=0.379 Sum_probs=27.2
Q ss_pred HHHHHHHHhCCCHHHHHHHcC------CC-CCCCHHHHHHHHH
Q 044292 118 CQATADVIKDKSPEEVRRIFH------IN-NDFTPQEEQEIRR 153 (160)
Q Consensus 118 ~~~ia~~i~~kt~eeir~~f~------i~-~d~t~eee~~~~~ 153 (160)
=..||..+.|+|..++|..+. +. ..+|+||.+.+.+
T Consensus 50 W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~ 92 (128)
T 1h8a_C 50 WSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQ 92 (128)
T ss_dssp HHHHHHHSSSCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhcccccccccCCHHHHHHHHH
Confidence 357788889999999998653 22 3599999887765
No 40
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=48.90 E-value=24 Score=26.66 Aligned_cols=65 Identities=11% Similarity=0.090 Sum_probs=47.0
Q ss_pred CCHHHHHHHHHhhhhcCchhHHHHHHHHHHHHHh---------CCCHHHHHHHcCCCCCCC-HHHHHHHHHhcccc
Q 044292 93 VDQETLLDLLLAANYLNIKDLLELTCQATADVIK---------DKSPEEVRRIFHINNDFT-PQEEQEIRRENQWA 158 (160)
Q Consensus 93 ~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i~---------~kt~eeir~~f~i~~d~t-~eee~~~~~e~~w~ 158 (160)
++.+..+.++..|...+.+.|.+.|..+|+..+. ..+.+++.++++=. ++. +.|++-.+.-..|+
T Consensus 139 l~~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~~~~~f~~L~~~~l~~lL~~d-~L~v~sE~~vf~av~~W~ 213 (279)
T 3i3n_A 139 LHLSNCVAIHSLAHMYTLSQLALKAADMIRRNFHKVIQDEEFYTLPFHLIRDWLSDL-EITVDSEEVLFETVLKWV 213 (279)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTHHHHTTSSGGGGSCHHHHHHHHTCS-SCCCSCHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCcChhcCCHHHHHHHhcCc-CCCCCCHHHHHHHHHHHH
Confidence 6778899999999999999999999999976543 34788999888842 343 22333334444565
No 41
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=47.52 E-value=5.5 Score=19.61 Aligned_cols=12 Identities=50% Similarity=0.642 Sum_probs=9.7
Q ss_pred HHHHHHhhhhcC
Q 044292 98 LLDLLLAANYLN 109 (160)
Q Consensus 98 l~~Ll~AA~~L~ 109 (160)
+.-|+.||.||.
T Consensus 5 vq~LLeAAeyLE 16 (26)
T 1pd7_B 5 IQMLLEAADYLE 16 (26)
T ss_dssp THHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 456899999986
No 42
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=46.71 E-value=11 Score=25.95 Aligned_cols=34 Identities=12% Similarity=0.108 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHhhhhcCchhHHHHHHHHHHHHHh
Q 044292 93 VDQETLLDLLLAANYLNIKDLLELTCQATADVIK 126 (160)
Q Consensus 93 ~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i~ 126 (160)
++.+..++++..|...+.+.|.+.|.++|+..+.
T Consensus 132 l~~~n~~~~~~~A~~~~~~~L~~~~~~~i~~~~~ 165 (172)
T 3htm_A 132 LSVENAAEILILADLHSADQLKTQAVDFINYHAT 165 (172)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC-
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 6778899999999999999999999999987654
No 43
>3g5o_A Uncharacterized protein RV2865; heterotetramer, 1:1 ratio, structural genomics, PSI-2, prote structure initiative; 2.00A {Mycobacterium tuberculosis}
Probab=45.57 E-value=46 Score=21.78 Aligned_cols=49 Identities=20% Similarity=0.295 Sum_probs=41.8
Q ss_pred CCHHHHHHHHHhhhhcCchhHHHHHHHHHHHHHhCC--CHHHHHHHcCCCC
Q 044292 93 VDQETLLDLLLAANYLNIKDLLELTCQATADVIKDK--SPEEVRRIFHINN 141 (160)
Q Consensus 93 ~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i~~k--t~eeir~~f~i~~ 141 (160)
++.+..-.|......|..+.+.......++..-.|+ +.+|+++.+|+..
T Consensus 47 ~s~e~ye~l~etl~LL~~~~~~~~L~~a~~~~~~G~~~s~eev~~~lgl~~ 97 (108)
T 3g5o_A 47 VGADEWESLQETLYWLAQPGIRESIAEADADIASGRTYGEDEIRAEFGVPR 97 (108)
T ss_dssp EEHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHTCEECHHHHHHHHTCCC
T ss_pred ecHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHcCCCcCHHHHHHHhCCCc
Confidence 577777788888888989999999999888877776 8999999999874
No 44
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.77 E-value=17 Score=23.45 Aligned_cols=46 Identities=11% Similarity=0.095 Sum_probs=37.8
Q ss_pred CCHHHHHHHHHhhhhcCchhHHHHHHHHHHHHHh---------CCCHHHHHHHcC
Q 044292 93 VDQETLLDLLLAANYLNIKDLLELTCQATADVIK---------DKSPEEVRRIFH 138 (160)
Q Consensus 93 ~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i~---------~kt~eeir~~f~ 138 (160)
++.++.+.++..|...+.+.|.+.|-+++...+. ..+.+++..+++
T Consensus 8 L~~~NCl~i~~~A~~~~~~~L~~~a~~fi~~nF~~v~~~~eFl~L~~~~L~~lL~ 62 (105)
T 2eqx_A 8 VQVGNCLQVMWLADRHSDPELYTAAKHCAKTHLAQLQNTEEFLHLPHRLLTDIIS 62 (105)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTCHHHHTSHHHHHSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcccHhhCCHHHHHHHHc
Confidence 6788999999999999999999999999875432 356777777766
No 45
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=42.19 E-value=18 Score=22.12 Aligned_cols=19 Identities=16% Similarity=0.167 Sum_probs=13.9
Q ss_pred HHHHHHHhCCCHHHHHHHcC
Q 044292 119 QATADVIKDKSPEEVRRIFH 138 (160)
Q Consensus 119 ~~ia~~i~~kt~eeir~~f~ 138 (160)
..||..+ |+|++|+++.+.
T Consensus 35 ~~IA~~l-gRt~~eV~~~y~ 53 (72)
T 2cqq_A 35 EKIAHEL-GRSVTDVTTKAK 53 (72)
T ss_dssp HHHHHHH-TSCHHHHHHHHH
T ss_pred HHHHHHh-CCCHHHHHHHHH
Confidence 3455555 899999998664
No 46
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=41.57 E-value=20 Score=26.60 Aligned_cols=66 Identities=11% Similarity=0.203 Sum_probs=44.2
Q ss_pred CCHHHHHHHHHhhhhcCchhHHHHHHHHHHHHHh---------CCCHHHHHHHcCCCCCCC-HHHHHHHHHhccccc
Q 044292 93 VDQETLLDLLLAANYLNIKDLLELTCQATADVIK---------DKSPEEVRRIFHINNDFT-PQEEQEIRRENQWAF 159 (160)
Q Consensus 93 ~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i~---------~kt~eeir~~f~i~~d~t-~eee~~~~~e~~w~~ 159 (160)
++.+..+.++..|...+...|.+.|..+|+..+. ..+.+++.+++.= +++. +.|++-.+.-..|+.
T Consensus 131 l~~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~~~~~f~~L~~~~l~~lL~~-d~L~v~~E~~v~~av~~W~~ 206 (256)
T 3hve_A 131 IAAENCIGIRDFALHYCLHHVHYLATEYLETHFRDVSSTEEFLELSPQKLKEVISL-EKLNVGNERYVFEAVIRWIA 206 (256)
T ss_dssp CCSSTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTCHHHHSSCHHHHHHHHHC-C-------CTTHHHHTTTCC
T ss_pred CCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhCCcchhcCCHHHHHHHHcc-CCCCCCCHHHHHHHHHHHHH
Confidence 5667889999999999999999999999976553 3567777777763 2343 223333444456763
No 47
>1lvo_A Replicase, hydrolase domain; 3C like, corona, proteinase, chymotrypsin, cysteine histidine DYAD, beta barrel; 1.96A {Transmissible gastroenteritis virus} SCOP: b.47.1.4 PDB: 1p9u_A 2amp_A*
Probab=41.52 E-value=5.5 Score=31.15 Aligned_cols=99 Identities=13% Similarity=0.206 Sum_probs=61.7
Q ss_pred CccccCCCCHHHHHHHHHHHHhchhhhhh-----ccCCCCCccch--hhhhccCCHHHHHHHHHhhhhcCchhHHHHHHH
Q 044292 47 SVIPLPNVTGTILSMVVEYCKKHVEAAAA-----AAGGDNDVKNW--DRDFVKVDQETLLDLLLAANYLNIKDLLELTCQ 119 (160)
Q Consensus 47 ~~Ipl~~i~~~~L~~Ii~~~~~h~~~~~~-----~~~~~~~~~~w--d~~Fl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~ 119 (160)
+...++..+.-.-..|+.|++-+--...+ ...+...+.+| ...|-.......++.+.|..=-.+..|+...-+
T Consensus 188 ~~~Q~~~~~~~~T~NVvA~LYAAilng~~wfl~~~~~s~~~fN~WA~~ngft~~~~~~~~~~Laa~TgVsVe~lLaaI~~ 267 (302)
T 1lvo_A 188 PSMQLEGTNVMSSDNVVAFLYAALINGERWFVTNTSMSLESYNTWAKTNSFTELSSTDAFSMLAAKTGQSVEKLLDSIVR 267 (302)
T ss_dssp SCCCCCCCCCBCHHHHHHHHHHHHHTTCCTTCCSCCCCHHHHHHHHTTTTBCCCCCSGGGHHHHHHHCCCHHHHHHHHHH
T ss_pred hhhhccCcceeeehhHHHHHHHHHHcCCceeeccceecHHHHHHHHHhCCcccccchhHhHHHHHHhCCcHHHHHHHHHH
Confidence 34456555556667899999876543211 11233445556 334545566678999999999999888865543
Q ss_pred HHHHHHhCCCHHHHHHHcCCCCCCCHHHHH
Q 044292 120 ATADVIKDKSPEEVRRIFHINNDFTPQEEQ 149 (160)
Q Consensus 120 ~ia~~i~~kt~eeir~~f~i~~d~t~eee~ 149 (160)
. +.-+.|++ |.-...++++|||++.-
T Consensus 268 L-~~g~~G~~---IlG~~~leDE~Tp~~V~ 293 (302)
T 1lvo_A 268 L-NKGFGGRT---ILSYGSLCDEFTPTEVI 293 (302)
T ss_dssp H-TTCCTTCC---BTTBSSCCCCSCHHHHH
T ss_pred H-hcCCCCce---ecccccccccCCHHHHH
Confidence 3 44445555 44455577889998753
No 48
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=41.46 E-value=35 Score=22.85 Aligned_cols=36 Identities=14% Similarity=0.327 Sum_probs=27.3
Q ss_pred HHHHHHHHhCCCHHHHHHHcC------CCC-CCCHHHHHHHHH
Q 044292 118 CQATADVIKDKSPEEVRRIFH------INN-DFTPQEEQEIRR 153 (160)
Q Consensus 118 ~~~ia~~i~~kt~eeir~~f~------i~~-d~t~eee~~~~~ 153 (160)
=..||..+.|+|..+.|+.+. +.. .+|+||.+.|..
T Consensus 33 W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~ 75 (126)
T 3osg_A 33 WKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQ 75 (126)
T ss_dssp HHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHH
Confidence 467788888999999998543 333 499999887665
No 49
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=40.76 E-value=71 Score=20.56 Aligned_cols=79 Identities=11% Similarity=0.015 Sum_probs=37.7
Q ss_pred CCCHHHHHHHHHHHHhchhhhhhccCCCCCccchhhhhccCCHHHHHHHHHhhhhcCchhHHHHHH-HHHHHHHh--CCC
Q 044292 53 NVTGTILSMVVEYCKKHVEAAAAAAGGDNDVKNWDRDFVKVDQETLLDLLLAANYLNIKDLLELTC-QATADVIK--DKS 129 (160)
Q Consensus 53 ~i~~~~L~~Ii~~~~~h~~~~~~~~~~~~~~~~wd~~Fl~~~~~~l~~Ll~AA~~L~I~~L~~~~~-~~ia~~i~--~kt 129 (160)
.+....+.+|++|++.|...+. .+.++ .+-+.++...|..++... -+....++...- .....++. +.+
T Consensus 3 ~~~~~~~~~~~~~i~~~~~~~~-------~~~~l-A~~~~~S~~~l~r~fk~~-G~s~~~~~~~~Rl~~A~~lL~~~~~s 73 (120)
T 3mkl_A 3 ALQPNMRTRVCTVINNNIAHEW-------TLARI-ASELLMSPSLLKKKLREE-ETSYSQLLTECRMQRALQLIVIHGFS 73 (120)
T ss_dssp --CCCHHHHHHHHHHTSTTSCC-------CHHHH-HHHTTCCHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHHHTSTTCC
T ss_pred cccHHHHHHHHHHHHHhccCCC-------CHHHH-HHHHCcCHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3455678899999988765432 22222 222345666666666542 233333222221 11222332 456
Q ss_pred HHHHHHHcCCC
Q 044292 130 PEEVRRIFHIN 140 (160)
Q Consensus 130 ~eeir~~f~i~ 140 (160)
+.+|-..+|..
T Consensus 74 i~eIA~~~Gf~ 84 (120)
T 3mkl_A 74 IKRVAVSCGYH 84 (120)
T ss_dssp HHHHHHHTTCS
T ss_pred HHHHHHHHCCC
Confidence 66665555543
No 50
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=40.05 E-value=19 Score=22.24 Aligned_cols=20 Identities=30% Similarity=0.542 Sum_probs=16.0
Q ss_pred HHHHHHHhCCCHHHHHHHcC
Q 044292 119 QATADVIKDKSPEEVRRIFH 138 (160)
Q Consensus 119 ~~ia~~i~~kt~eeir~~f~ 138 (160)
..||..+-|||++|+++.|.
T Consensus 35 e~IA~~V~gKT~eE~~~hY~ 54 (73)
T 1wgx_A 35 SEVAAAVGSRSPEECQRKYM 54 (73)
T ss_dssp HHHHHHTTTSCHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHH
Confidence 46788888999999987553
No 51
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=39.61 E-value=16 Score=24.75 Aligned_cols=34 Identities=24% Similarity=0.545 Sum_probs=25.3
Q ss_pred HHHHHHhCCCHHHHHHHc------CCCC-CCCHHHHHHHHH
Q 044292 120 ATADVIKDKSPEEVRRIF------HINN-DFTPQEEQEIRR 153 (160)
Q Consensus 120 ~ia~~i~~kt~eeir~~f------~i~~-d~t~eee~~~~~ 153 (160)
.||..+.|+|..+.|+.+ ++.. .+|+||.+.|..
T Consensus 27 ~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~ 67 (131)
T 3zqc_A 27 RITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFR 67 (131)
T ss_dssp GGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHH
Confidence 556667789999998866 3443 499999887755
No 52
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2
Probab=37.52 E-value=16 Score=24.43 Aligned_cols=89 Identities=7% Similarity=0.035 Sum_probs=55.6
Q ss_pred CCCCccEEEEcCCCCEEEecHHHHHHh--HHHHHHHhhcC----CCCccccCCCCHHHHHHHHHHHHhchhhhhhccCCC
Q 044292 7 NNSKKMIILKSSDGETFEVEETVALQS--QTIRHMVEDDC----ADSVIPLPNVTGTILSMVVEYCKKHVEAAAAAAGGD 80 (160)
Q Consensus 7 ~~~~~~i~l~s~DG~~~~v~~~~a~~S--~~l~~~l~~~~----~~~~Ipl~~i~~~~L~~Ii~~~~~h~~~~~~~~~~~ 80 (160)
|++++.|+|-- .|+.|..+...+..- ..|..|+.... ..+.+=+ +-++..++.|+.|+...+-.
T Consensus 1 m~~~~~V~LNV-GG~~f~T~~~TL~~~P~s~L~~l~~~~~~~~~~~g~~Fi-DRdp~~F~~ILnylR~G~l~-------- 70 (115)
T 3kvt_A 1 MDAENRVIINV-GGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFF-DRHPGVFAQIINYYRSGKLH-------- 70 (115)
T ss_dssp ---CCEEEEEE-TTEEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEE-CSCTTTHHHHHHHHHHSCBC--------
T ss_pred CCCCCEEEEEE-CCEEEEecHHHHhcCCCccHHHHhcCCCCCCCCCCcEEE-ecChHHHHHHHHHhcCCCCC--------
Confidence 56666777654 499999999877532 23444443211 2344555 77899999999999864311
Q ss_pred CCccchhhhhccCCHHHHHHHHHhhhhcCchhHHHH
Q 044292 81 NDVKNWDRDFVKVDQETLLDLLLAANYLNIKDLLEL 116 (160)
Q Consensus 81 ~~~~~wd~~Fl~~~~~~l~~Ll~AA~~L~I~~L~~~ 116 (160)
+|+ ++. ...++..|.|.+|.++.--
T Consensus 71 --~p~------~~~---~~~~~~Ea~fy~i~~~~l~ 95 (115)
T 3kvt_A 71 --YPT------DVC---GPLFEEELEFWGLDSNQVE 95 (115)
T ss_dssp --CCS------SSC---HHHHHHHHHHHTCCGGGBC
T ss_pred --CCC------ccc---HHHHHHHHHHhCCChHHHH
Confidence 111 122 3478899999999987544
No 53
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=37.20 E-value=8.1 Score=24.09 Aligned_cols=46 Identities=20% Similarity=0.430 Sum_probs=30.6
Q ss_pred cCCHHHHHHHHHhhhhcCchhHHHHHHHHHHHHHhCCCHHHHHHHcCCCC
Q 044292 92 KVDQETLLDLLLAANYLNIKDLLELTCQATADVIKDKSPEEVRRIFHINN 141 (160)
Q Consensus 92 ~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i~~kt~eeir~~f~i~~ 141 (160)
.-..+.+|+-..|..=-+-+.-. ..||..+-|||++|+++.+.++.
T Consensus 24 T~eE~K~FE~ALa~yp~~tpdRW----ekIA~~VpGKT~eEVk~hY~~~~ 69 (74)
T 4eef_G 24 KFSENIAFEIALSFTNKDTPDRW----KKVAQYVKGRTPEEVKKHYELEH 69 (74)
T ss_dssp CTTHHHHHHHHTSSSCSSCCSSS----TTTGGGSCSSCHHHHHGGGC---
T ss_pred CHHHHHHHHHHHHHCCCCCCcHH----HHHHHHcCCCCHHHHHHHHHHhh
Confidence 45677888877766544433222 46777778999999999988753
No 54
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=36.15 E-value=15 Score=25.55 Aligned_cols=89 Identities=9% Similarity=0.078 Sum_probs=55.4
Q ss_pred ccEEEEcCCCCEEEecHHHHHHh--HHHHHHHhhc---CCCCccccCCCCHHHHHHHHHHHHhchhhhhhccCCCCCccc
Q 044292 11 KMIILKSSDGETFEVEETVALQS--QTIRHMVEDD---CADSVIPLPNVTGTILSMVVEYCKKHVEAAAAAAGGDNDVKN 85 (160)
Q Consensus 11 ~~i~l~s~DG~~~~v~~~~a~~S--~~l~~~l~~~---~~~~~Ipl~~i~~~~L~~Ii~~~~~h~~~~~~~~~~~~~~~~ 85 (160)
..|+| --.|+.|.++...+..- .+|...-... ...+.+-+ +=++..++.|+.|+...+-. +++
T Consensus 35 ~~V~L-NVGG~~F~T~~~TL~~~P~S~L~~~~~~~~~~~~~g~yFi-DRdp~~F~~ILnflR~G~l~----------~p~ 102 (140)
T 2nz0_B 35 ELIVL-NVSGRRFQTWRTTLERYPDTLLGSTEKEFFFNEDTKEYFF-DRDPEVFRCVLNFYRTGKLH----------YPR 102 (140)
T ss_dssp CEEEE-EETTEEEEEEHHHHHTCTTSTTTSGGGGGSEETTTTEEEE-CSCHHHHHHHHHHHHHSSBC----------CCT
T ss_pred CEEEE-EECCEEEEeeHHHHhcCCCeeecccCCcccccCCCCeEEE-eCCcHHHHHHHHHHhcCCcC----------CCC
Confidence 34544 45599999999876531 1221100000 12455556 77999999999999974321 111
Q ss_pred hhhhhccCCHHHHHHHHHhhhhcCchhH-HHHHHHH
Q 044292 86 WDRDFVKVDQETLLDLLLAANYLNIKDL-LELTCQA 120 (160)
Q Consensus 86 wd~~Fl~~~~~~l~~Ll~AA~~L~I~~L-~~~~~~~ 120 (160)
++ .+..|...|.|.+|..| ++.||..
T Consensus 103 ------~~---~~~~l~eEa~fy~i~~l~l~~CC~~ 129 (140)
T 2nz0_B 103 ------YE---CISAYDDELAFYGILPEIIGDCCYE 129 (140)
T ss_dssp ------TS---CHHHHHHHHHHHTCCGGGBCTTTHH
T ss_pred ------Cc---CHHHHHHHHHHcCCChHHHHHHHHH
Confidence 12 26778999999999998 5666643
No 55
>2f6h_X Myosin-2, type V myosin; mysoin V, cargo binding, cargo transport, vacuole binding, secreatory vescIle binding, structural protein; 2.25A {Saccharomyces cerevisiae}
Probab=35.72 E-value=45 Score=27.31 Aligned_cols=44 Identities=14% Similarity=0.267 Sum_probs=28.1
Q ss_pred HHHHHHHHHhhhhcCchhHHHHHHHHHHHHHhCCCHHHHHHHcC
Q 044292 95 QETLLDLLLAANYLNIKDLLELTCQATADVIKDKSPEEVRRIFH 138 (160)
Q Consensus 95 ~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i~~kt~eeir~~f~ 138 (160)
.+.|-.+..|+++|++..=...-...+-.....-|+.||.+.+.
T Consensus 282 ~~~L~~l~Qa~~lLq~~k~~~~d~~~i~~~C~~Ln~~Ql~~il~ 325 (419)
T 2f6h_X 282 TECLQHLIQTAKLLQVRKYTIEDIDILRGICYSLTPAQLQKLIS 325 (419)
T ss_dssp HHHTHHHHHHHHHTTSCCSSHHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCCchhhHHHHHHHhhcCCHHHHHHHHH
Confidence 45688899999999987522222222434445678888877543
No 56
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=35.55 E-value=27 Score=22.65 Aligned_cols=42 Identities=19% Similarity=0.205 Sum_probs=26.6
Q ss_pred CHHHHHHHHHhhhhcCchhHHHHHHHHHHHHHhCCCHHHHHHHcC
Q 044292 94 DQETLLDLLLAANYLNIKDLLELTCQATADVIKDKSPEEVRRIFH 138 (160)
Q Consensus 94 ~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i~~kt~eeir~~f~ 138 (160)
..+.=-.+|.+..-.+-.. -+-.+||..+.+|+++|++..|.
T Consensus 37 TRe~DR~IL~~cQ~~G~s~---~tFa~iA~~L~Nks~nqV~~RFq 78 (95)
T 1ug2_A 37 TREADRVILTMCQEQGAQP---HTFSVISQQLGNKTPVEVSHRFR 78 (95)
T ss_dssp CHHHHHHHHHHHHHTTSCT---TTHHHHHHHHSSCCHHHHHHHHH
T ss_pred ccccCHHHHHHHHhcCCCh---hHHHHHHHHHccCCHHHHHHHHH
Confidence 4555555666655444311 12345888889999999998874
No 57
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=32.53 E-value=25 Score=21.03 Aligned_cols=20 Identities=15% Similarity=0.323 Sum_probs=14.4
Q ss_pred CCHHHHHHHcCCCCC---CCHHH
Q 044292 128 KSPEEVRRIFHINND---FTPQE 147 (160)
Q Consensus 128 kt~eeir~~f~i~~d---~t~ee 147 (160)
+|.+|-+++|||..+ .|.++
T Consensus 1 mt~~EA~~ILgv~~~~~~a~~~~ 23 (65)
T 2guz_B 1 MTLDESCKILNIEESKGDLNMDK 23 (65)
T ss_dssp CCHHHHHHHTTCCGGGTCCSHHH
T ss_pred CCHHHHHHHhCCCCCcCcCCHHH
Confidence 467788889999866 56643
No 58
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.92 E-value=29 Score=20.21 Aligned_cols=20 Identities=15% Similarity=0.110 Sum_probs=16.4
Q ss_pred HHHHHHHhCCCHHHHHHHcC
Q 044292 119 QATADVIKDKSPEEVRRIFH 138 (160)
Q Consensus 119 ~~ia~~i~~kt~eeir~~f~ 138 (160)
..||..+.++|+.++++++.
T Consensus 35 ~~Ia~~l~~rt~~~~v~~Yy 54 (61)
T 2eqr_A 35 GLIASYLERKSVPDCVLYYY 54 (61)
T ss_dssp HHHHHHCTTSCHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHH
Confidence 56688889999999988764
No 59
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=31.77 E-value=36 Score=19.62 Aligned_cols=33 Identities=24% Similarity=0.253 Sum_probs=22.0
Q ss_pred HHHHhhhhcCchhHHHHHHHHHHHHHhCCCHHHHHHHc
Q 044292 100 DLLLAANYLNIKDLLELTCQATADVIKDKSPEEVRRIF 137 (160)
Q Consensus 100 ~Ll~AA~~L~I~~L~~~~~~~ia~~i~~kt~eeir~~f 137 (160)
.|+.|-..++... =..||..+.|+|..|+|..|
T Consensus 18 ~L~~~v~~~G~~~-----W~~Ia~~~~~Rt~~qcr~r~ 50 (60)
T 1x41_A 18 ALLEAVMDCGFGN-----WQDVANQMCTKTKEECEKHY 50 (60)
T ss_dssp HHHHHHHHTCTTC-----HHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHCcCc-----HHHHHHHhCCCCHHHHHHHH
Confidence 3444444455322 25678888999999999865
No 60
>1ni7_A ER75, hypothetical protein YGDK; RD-structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Escherichia coli} SCOP: d.224.1.1
Probab=31.67 E-value=68 Score=22.58 Aligned_cols=35 Identities=6% Similarity=0.157 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHHhCCCHHHHHH--------HcCCCCCCCHH
Q 044292 112 DLLELTCQATADVIKDKSPEEVRR--------IFHINNDFTPQ 146 (160)
Q Consensus 112 ~L~~~~~~~ia~~i~~kt~eeir~--------~f~i~~d~t~e 146 (160)
.++.-.++.+...++|+|++||.+ .+|+...+||-
T Consensus 86 ~IvkGL~AlL~~~~~G~tp~eIl~~d~~~f~~~lGL~~~LSps 128 (155)
T 1ni7_A 86 RIVRGLLAVLLTAVEGKTAAELQAQSPLALFDELGLRAQLSAS 128 (155)
T ss_dssp HHHHHHHHHHHHHTTTCCHHHHHHSCTHHHHHHHTSSSSSCHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHhCCHHHHHHHcCchhhcCch
Confidence 345555666777789999999965 56788888885
No 61
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=30.65 E-value=53 Score=21.21 Aligned_cols=18 Identities=22% Similarity=0.397 Sum_probs=13.5
Q ss_pred HHHHHH-----hCCCHHHHHHHc
Q 044292 120 ATADVI-----KDKSPEEVRRIF 137 (160)
Q Consensus 120 ~ia~~i-----~~kt~eeir~~f 137 (160)
.|+... .+.|+++|+..|
T Consensus 54 vI~DRy~~~~~~~Rt~EdLK~Ry 76 (93)
T 3hm5_A 54 VIHDRYDHQQFKKRSVEDLKERY 76 (93)
T ss_dssp HHHHHSCTTTSCCCCHHHHHHHH
T ss_pred eehhhhccCCCCCCCHHHHHHHH
Confidence 567777 468999998865
No 62
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=30.40 E-value=31 Score=22.23 Aligned_cols=20 Identities=25% Similarity=0.620 Sum_probs=17.0
Q ss_pred HHHHHHHhCCCHHHHHHHcC
Q 044292 119 QATADVIKDKSPEEVRRIFH 138 (160)
Q Consensus 119 ~~ia~~i~~kt~eeir~~f~ 138 (160)
..||..+-|+|..|+|..|.
T Consensus 35 ~~IA~~vpGRT~~q~k~ry~ 54 (93)
T 2cjj_A 35 ANVARAVEGRTPEEVKKHYE 54 (93)
T ss_dssp HHHHHHSTTCCHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHH
Confidence 57888889999999998765
No 63
>2qq4_A Iron-sulfur cluster biosynthesis protein ISCU; zinc binding, iron-sulfur cluster binding, three conserved Cys, three beta strands; 1.85A {Thermus thermophilus}
Probab=29.87 E-value=54 Score=22.45 Aligned_cols=36 Identities=8% Similarity=0.111 Sum_probs=23.5
Q ss_pred HHhhhhcCchhHHHHH-HHHHHHHHhCCCHHHHHHHc
Q 044292 102 LLAANYLNIKDLLELT-CQATADVIKDKSPEEVRRIF 137 (160)
Q Consensus 102 l~AA~~L~I~~L~~~~-~~~ia~~i~~kt~eeir~~f 137 (160)
+..+.|-.-=.-...+ +-.++++++|||++|.+++.
T Consensus 54 I~d~~f~~~GCais~ASaS~~te~i~Gkt~~ea~~i~ 90 (138)
T 2qq4_A 54 IADIRFQGQGCAISTASASLMTEAVKGKKVAEALELS 90 (138)
T ss_dssp EEEEEEEEECCHHHHHHHHHHHHHHTTSBHHHHHHHH
T ss_pred EEEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 4444454444334444 45567899999999998865
No 64
>3d55_A Antitoxin, uncharacterized protein RV3357/MT3465; tetramer, toxin neutraliSer, toxin inhibitor; 2.13A {Mycobacterium tuberculosis} PDB: 3cto_A 3oei_A* 3oei_E*
Probab=29.67 E-value=33 Score=21.56 Aligned_cols=48 Identities=13% Similarity=0.011 Sum_probs=22.2
Q ss_pred CCHHHHHHHHHhhhhcCchhHHHHHHHHHHHHHhCC-----CHHHHHHHcCCC
Q 044292 93 VDQETLLDLLLAANYLNIKDLLELTCQATADVIKDK-----SPEEVRRIFHIN 140 (160)
Q Consensus 93 ~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i~~k-----t~eeir~~f~i~ 140 (160)
++.+..-.|......|..+.+.+...+.++..-.|+ +.+|+++.+|+.
T Consensus 38 ~s~e~y~~l~et~~ll~~~~~~~~l~~a~~~~~~G~~~~~~~l~el~~~lg~~ 90 (91)
T 3d55_A 38 MSADDYDAWQETVYLLRSPENARRLMEAVARDKAGHSAFTKSVDELREMAGGE 90 (91)
T ss_dssp EEHHHHHHHHHHHHHTTSHHHHHHHHHHHTC----------------------
T ss_pred eeHHHHhhHHHHHHHHhChHHHHHHHHHHHHHHcCCCccCCCHHHHHHHhCCC
Confidence 455666666777777888888877777776555555 458899999874
No 65
>3g0m_A Cysteine desulfuration protein SUFE; YNHA, csgid, national I of allergy and infectious diseases, niaid, hydrolase, struc genomics; 1.76A {Salmonella typhimurium LT2} SCOP: d.224.1.1 PDB: 1mzg_A
Probab=29.64 E-value=55 Score=22.65 Aligned_cols=35 Identities=6% Similarity=0.158 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHHhCCCHHHHHH--------HcCCCCCCCHH
Q 044292 112 DLLELTCQATADVIKDKSPEEVRR--------IFHINNDFTPQ 146 (160)
Q Consensus 112 ~L~~~~~~~ia~~i~~kt~eeir~--------~f~i~~d~t~e 146 (160)
.++.-.++.+...+.|+|++||.+ .+|+...+||-
T Consensus 79 ~IvkGl~alL~~~~~G~tp~eIl~~d~~~f~~~lGL~~~LSps 121 (141)
T 3g0m_A 79 AIVKGLMAVVFILYHQMTAQDIVHFDVRPWFEKMALAQHLTPS 121 (141)
T ss_dssp HHHHHHHHHHHHHHTTCBHHHHHHCCCHHHHHHHTCGGGSCHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHhCCHHHHHHHcCchhhcCch
Confidence 344555566677779999999975 46777778874
No 66
>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}
Probab=29.27 E-value=15 Score=28.83 Aligned_cols=36 Identities=22% Similarity=0.397 Sum_probs=26.2
Q ss_pred HHHHHHhhhhcCchhHHHHHHHHHHHHHhCCCHHHHHHHcCCCCCC
Q 044292 98 LLDLLLAANYLNIKDLLELTCQATADVIKDKSPEEVRRIFHINNDF 143 (160)
Q Consensus 98 l~~Ll~AA~~L~I~~L~~~~~~~ia~~i~~kt~eeir~~f~i~~d~ 143 (160)
+..|+.||..+|+-. +++.|-..+++|+.||||+++
T Consensus 245 ~~nl~LaA~~~GLgs----------~~~~~~~~~~v~~~L~lP~~~ 280 (322)
T 4eo3_A 245 VGNLLVQATQMGLVA----------HPVAGYDPVKVKEILKIPEDH 280 (322)
T ss_dssp HHHHHHHHHHTTCEE----------EEECCSCHHHHHHHHTCCTTS
T ss_pred HHHHHHHHHHcCcCE----------EEcCccCHHHHHHHcCcCCCC
Confidence 346677777777653 234567899999999999874
No 67
>3lvl_A NIFU-like protein; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 3.00A {Escherichia coli} PDB: 2l4x_A 2kqk_A 1q48_A 1r9p_A 1wfz_A
Probab=28.64 E-value=52 Score=22.29 Aligned_cols=38 Identities=16% Similarity=0.142 Sum_probs=24.3
Q ss_pred HHHhhhhcCchhHHH-HHHHHHHHHHhCCCHHHHHHHcC
Q 044292 101 LLLAANYLNIKDLLE-LTCQATADVIKDKSPEEVRRIFH 138 (160)
Q Consensus 101 Ll~AA~~L~I~~L~~-~~~~~ia~~i~~kt~eeir~~f~ 138 (160)
.+..+.|-.-=.-.. .++-.++++++|||++|.+++.+
T Consensus 53 ~I~d~~f~~~GCais~ASaS~~te~i~Gkt~~ea~~i~~ 91 (129)
T 3lvl_A 53 IIEDARFKTYGCGSAIASSSLVTEWVKGKSLDEAQAIKN 91 (129)
T ss_dssp CEEEEEEEEESCHHHHHHHHHHHHHHTTCCHHHHHTCCH
T ss_pred eEEEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 344455554443333 44456678999999999987643
No 68
>1xjs_A NIFU-like protein; SR17, structure, autostructure, iron-sulfur, zinc, northeast structural genomics consortium, NESG; NMR {Bacillus subtilis} SCOP: d.224.1.2 PDB: 2azh_A
Probab=28.39 E-value=58 Score=22.55 Aligned_cols=38 Identities=13% Similarity=0.139 Sum_probs=24.9
Q ss_pred HHHhhhhcCchhHHHHH-HHHHHHHHhCCCHHHHHHHcC
Q 044292 101 LLLAANYLNIKDLLELT-CQATADVIKDKSPEEVRRIFH 138 (160)
Q Consensus 101 Ll~AA~~L~I~~L~~~~-~~~ia~~i~~kt~eeir~~f~ 138 (160)
.+..+.|-.-=.-...+ +-.++++++|||++|.+++..
T Consensus 55 ~I~d~~f~~~GCais~ASaS~mte~v~Gkt~~Ea~~i~~ 93 (147)
T 1xjs_A 55 IVEDAKFEGEGCSISMASASMMTQAIKGKDIETALSMSK 93 (147)
T ss_dssp BCCEEEEEEESSHHHHHHHHHHHHHHTTSBHHHHHHHHH
T ss_pred eEEEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 44455555544444444 455678999999999988753
No 69
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=28.22 E-value=53 Score=22.73 Aligned_cols=35 Identities=20% Similarity=0.403 Sum_probs=26.6
Q ss_pred HHHHHHHhCCCHHHHHHHcC------CC-CCCCHHHHHHHHH
Q 044292 119 QATADVIKDKSPEEVRRIFH------IN-NDFTPQEEQEIRR 153 (160)
Q Consensus 119 ~~ia~~i~~kt~eeir~~f~------i~-~d~t~eee~~~~~ 153 (160)
..||..+.|+|..++|..+. +. ..+|+||.+.+..
T Consensus 82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~ 123 (159)
T 1h89_C 82 SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQ 123 (159)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHH
Confidence 56788889999999998653 33 3489999877655
No 70
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=27.98 E-value=19 Score=23.60 Aligned_cols=81 Identities=7% Similarity=0.069 Sum_probs=50.5
Q ss_pred CCCEEEecHHHHHHhH--HHHHHHhhc----CCCCccccCCCCHHHHHHHHHHHHhchhhhhhccCCCCCccchhhhhcc
Q 044292 19 DGETFEVEETVALQSQ--TIRHMVEDD----CADSVIPLPNVTGTILSMVVEYCKKHVEAAAAAAGGDNDVKNWDRDFVK 92 (160)
Q Consensus 19 DG~~~~v~~~~a~~S~--~l~~~l~~~----~~~~~Ipl~~i~~~~L~~Ii~~~~~h~~~~~~~~~~~~~~~~wd~~Fl~ 92 (160)
.|+.|.++...+..-+ .|... ... ...+.+-+ +=++..++.|+.|+...+-. +|+ +
T Consensus 7 GG~~f~t~~~TL~~~p~s~L~~~-~~~~~~~~~~~~~Fi-DRdp~~F~~ILnflR~g~l~----------~p~------~ 68 (105)
T 1nn7_A 7 SGTRFQTWQDTLERYPDTLLGSS-ERDFFYHPETQQYFF-DRDPDIFRHILNFYRTGKLH----------YPR------H 68 (105)
T ss_dssp TTEEEEECHHHHHTSCSSSTTSG-GGGGGEEGGGTEEEE-CSCTTTHHHHHHHHHHSCBC----------CCT------T
T ss_pred CCEEEEEeHHHHhcCCCcccccc-CCcccccCCCCcEEE-eCCcHHHHHHHHHHhcCCCC----------CCC------C
Confidence 5889999888765311 12211 100 01344555 67899999999999874311 111 1
Q ss_pred CCHHHHHHHHHhhhhcCchhHH-HHHHHH
Q 044292 93 VDQETLLDLLLAANYLNIKDLL-ELTCQA 120 (160)
Q Consensus 93 ~~~~~l~~Ll~AA~~L~I~~L~-~~~~~~ 120 (160)
+. +-.|...|.|.+|.+|+ +.||..
T Consensus 69 ~~---~~~l~~Ea~fy~i~~l~~~~cc~~ 94 (105)
T 1nn7_A 69 EC---ISAYDEELAFFGLIPEIIGDCCYE 94 (105)
T ss_dssp SC---HHHHHHHHHHHTCCSCCBCHHHHH
T ss_pred cC---HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 22 56799999999999984 667743
No 71
>1got_G GT-gamma; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: a.137.3.1 PDB: 1tbg_E 2trc_G 1b9y_B 1b9x_B 1a0r_G*
Probab=27.76 E-value=52 Score=20.22 Aligned_cols=18 Identities=6% Similarity=0.106 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHhchhhh
Q 044292 56 GTILSMVVEYCKKHVEAA 73 (160)
Q Consensus 56 ~~~L~~Ii~~~~~h~~~~ 73 (160)
|....-+++||+.|....
T Consensus 41 S~aa~~L~~Yce~~~~~D 58 (73)
T 1got_G 41 SKCCEEFRDYVEERSGED 58 (73)
T ss_dssp HHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHhcCCCC
Confidence 788889999999886544
No 72
>1xb4_A VPS25, hypothetical 23.6 kDa protein in YUH1-URA8 intergenic region; winged helix, unknown function; 3.10A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_B 1u5t_C
Probab=27.64 E-value=25 Score=26.10 Aligned_cols=14 Identities=21% Similarity=0.444 Sum_probs=11.2
Q ss_pred HHHHHHHhchhhhh
Q 044292 61 MVVEYCKKHVEAAA 74 (160)
Q Consensus 61 ~Ii~~~~~h~~~~~ 74 (160)
.|+.||+||+....
T Consensus 33 LIL~ycr~~ki~~l 46 (202)
T 1xb4_A 33 IISQYCKTKKIWYM 46 (202)
T ss_dssp HHHHHHHHTTCCEE
T ss_pred HHHHHHHHhCeeEe
Confidence 59999999987543
No 73
>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}
Probab=27.60 E-value=25 Score=22.52 Aligned_cols=17 Identities=29% Similarity=0.604 Sum_probs=15.9
Q ss_pred CCCHHHHHHHcCCCCCC
Q 044292 127 DKSPEEVRRIFHINNDF 143 (160)
Q Consensus 127 ~kt~eeir~~f~i~~d~ 143 (160)
|.|++|=|+.||++.|+
T Consensus 43 gltpeeYR~kwGlp~dy 59 (87)
T 2jsp_A 43 SMTPEEYREKWDLPVDY 59 (87)
T ss_dssp CSCHHHHHHHTTCGGGC
T ss_pred CCCHHHHHHHhCCCCCC
Confidence 89999999999999884
No 74
>3few_X Colicin S4; cell lysis, Y-RAY, cell killing, immune system; 2.45A {Escherichia coli}
Probab=27.56 E-value=51 Score=27.29 Aligned_cols=30 Identities=23% Similarity=0.370 Sum_probs=24.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHcCCCCCCCHH
Q 044292 117 TCQATADVIKDKSPEEVRRIFHINNDFTPQ 146 (160)
Q Consensus 117 ~~~~ia~~i~~kt~eeir~~f~i~~d~t~e 146 (160)
+-+-|.++|.-||++||-+.+|+++|-.+-
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 193 (505)
T 3few_X 164 AKAGIMEKINHKTPEEIYEALGFNKDESQR 193 (505)
T ss_dssp HHHHHHHHTTCCCHHHHHHHTTTTTTHHHH
T ss_pred hhhhHHHHhcCCCHHHHHHHhCCCccchHH
Confidence 345677889999999999999999875433
No 75
>1jw2_A Hemolysin expression modulating protein HHA; structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Escherichia coli} SCOP: a.23.5.1 PDB: 2jvp_A 2k5s_A
Probab=26.34 E-value=1.2e+02 Score=18.66 Aligned_cols=15 Identities=20% Similarity=0.193 Sum_probs=9.8
Q ss_pred CCHHHHHHHHHhhhh
Q 044292 93 VDQETLLDLLLAANY 107 (160)
Q Consensus 93 ~~~~~l~~Ll~AA~~ 107 (160)
++.+++..+..||++
T Consensus 35 Lt~~el~~f~~AaDH 49 (72)
T 1jw2_A 35 LSDNELAVFYSAADH 49 (72)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 455677777777764
No 76
>1su0_B NIFU like protein ISCU; structural genomics, BSGC structure funded by NI protein structure initiative, PSI; 2.30A {Streptococcus pyogenes} SCOP: d.224.1.2
Probab=26.20 E-value=76 Score=22.31 Aligned_cols=38 Identities=13% Similarity=0.093 Sum_probs=24.9
Q ss_pred HHHhhhhcCchhHHHHHH-HHHHHHHhCCCHHHHHHHcC
Q 044292 101 LLLAANYLNIKDLLELTC-QATADVIKDKSPEEVRRIFH 138 (160)
Q Consensus 101 Ll~AA~~L~I~~L~~~~~-~~ia~~i~~kt~eeir~~f~ 138 (160)
.+..+.|-.-=.-...++ -.++++++|||++|.+++..
T Consensus 54 ~I~d~~F~~~GCais~ASaS~mte~v~Gkt~~Ea~~i~~ 92 (159)
T 1su0_B 54 KIEDIAFAGNGCTISTASSSMMTDAVIGKSKEEALALAD 92 (159)
T ss_dssp SEEEEEEEEECCHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred EEEEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 444555555444444444 45678999999999988754
No 77
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=31.79 E-value=14 Score=22.62 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHcC
Q 044292 116 LTCQATADVIKDKSPEEVRRIFH 138 (160)
Q Consensus 116 ~~~~~ia~~i~~kt~eeir~~f~ 138 (160)
-+-++||..+ ++|++|+...|.
T Consensus 37 ~tfa~iA~~L-nks~~QV~~RF~ 58 (70)
T 2lr8_A 37 KTFAYLAAKL-DKNPNQVSERFQ 58 (70)
Confidence 3456788888 899999988774
No 78
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.57 E-value=49 Score=19.82 Aligned_cols=20 Identities=20% Similarity=0.302 Sum_probs=16.8
Q ss_pred HHHHHHHHhCCCHHHHHHHc
Q 044292 118 CQATADVIKDKSPEEVRRIF 137 (160)
Q Consensus 118 ~~~ia~~i~~kt~eeir~~f 137 (160)
-..||..+.|+|..|+|..+
T Consensus 36 W~~IA~~~~~Rt~~qcr~r~ 55 (75)
T 2yum_A 36 WQKIADELGNRTAKQVASQV 55 (75)
T ss_dssp HHHHHHHHSSSCHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHH
Confidence 46678888999999999876
No 79
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=25.20 E-value=52 Score=20.32 Aligned_cols=39 Identities=15% Similarity=0.195 Sum_probs=26.7
Q ss_pred CHHHHHHHHHhhhhcCchhHHHHHHHHHHHHHhCCCHHHHHHHcC
Q 044292 94 DQETLLDLLLAANYLNIKDLLELTCQATADVIKDKSPEEVRRIFH 138 (160)
Q Consensus 94 ~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i~~kt~eeir~~f~ 138 (160)
..++-.-|+.|-...+ . -=..||..+.++|..|+|..|.
T Consensus 22 T~eEd~~Ll~~v~~~G-~-----~W~~IA~~v~~RT~~qcr~r~~ 60 (79)
T 2yus_A 22 TEQETLLLLEALEMYK-D-----DWNKVSEHVGSRTQDECILHFL 60 (79)
T ss_dssp CHHHHHHHHHHHHHSS-S-----CHHHHHHHHSSCCHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhC-C-----CHHHHHHHcCCCCHHHHHHHHH
Confidence 4555555666655566 2 2367788888999999998664
No 80
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=25.08 E-value=42 Score=26.47 Aligned_cols=44 Identities=20% Similarity=0.246 Sum_probs=33.4
Q ss_pred hccCCHHHHHHHHHhhhhcCchhHHHHHHHHHHHHHhCCCHHHHHHHcC
Q 044292 90 FVKVDQETLLDLLLAANYLNIKDLLELTCQATADVIKDKSPEEVRRIFH 138 (160)
Q Consensus 90 Fl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i~~kt~eeir~~f~ 138 (160)
|-+++..+....+.|+.-.|-+. ...||..+.|||++|+++++.
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~-----~~~IA~ev~~Kt~eEV~~Y~~ 153 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDD-----IDNIAKDVEGKTPEEVIEYNA 153 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTC-----HHHHTTSSTTCCHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHHH-----HHHHHHHhcCCCHHHHHHHHH
Confidence 44468888889999977766554 346777778999999998765
No 81
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=24.41 E-value=79 Score=23.51 Aligned_cols=40 Identities=20% Similarity=0.286 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHcCCCCC-CCHHHHHHH
Q 044292 112 DLLELTCQATADVIKDKSPEEVRRIFHINND-FTPQEEQEI 151 (160)
Q Consensus 112 ~L~~~~~~~ia~~i~~kt~eeir~~f~i~~d-~t~eee~~~ 151 (160)
.|+-.+|-+||.++.+..+-.++++..+.++ +|.++..+.
T Consensus 95 qLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~m 135 (254)
T 2f2c_A 95 QKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLELINQ 135 (254)
T ss_dssp HHHHHHHHHHHHHHHCSSCCCHHHHSTTC---CCHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHhCCCCCHHHHHHH
Confidence 5888899999999987544445555666654 888765443
No 82
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=24.14 E-value=25 Score=21.59 Aligned_cols=21 Identities=19% Similarity=0.246 Sum_probs=17.2
Q ss_pred HHHHHHHHhCCCHHHHHHHcC
Q 044292 118 CQATADVIKDKSPEEVRRIFH 138 (160)
Q Consensus 118 ~~~ia~~i~~kt~eeir~~f~ 138 (160)
=..||..+-|+|..|+|..|.
T Consensus 44 W~~IA~~vpGRT~~qcr~Ry~ 64 (73)
T 2cqr_A 44 WDKIARCVPSKSKEDCIARYK 64 (73)
T ss_dssp HHHHGGGCSSSCHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHH
Confidence 356788888999999998664
No 83
>3cuq_C Vacuolar protein-sorting-associated protein 25; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_C
Probab=23.60 E-value=30 Score=25.03 Aligned_cols=13 Identities=23% Similarity=0.861 Sum_probs=10.6
Q ss_pred HHHHHHHhchhhh
Q 044292 61 MVVEYCKKHVEAA 73 (160)
Q Consensus 61 ~Ii~~~~~h~~~~ 73 (160)
.|+.||+||+...
T Consensus 36 LIl~ycr~~k~~~ 48 (176)
T 3cuq_C 36 LVLSFCRLHKQSS 48 (176)
T ss_dssp HHHHHHHHHTCCE
T ss_pred HHHHHHHHhCeeE
Confidence 4999999998653
No 84
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=23.52 E-value=82 Score=15.91 Aligned_cols=17 Identities=18% Similarity=0.133 Sum_probs=13.7
Q ss_pred HHhCCCHHHHHHHcCCC
Q 044292 124 VIKDKSPEEVRRIFHIN 140 (160)
Q Consensus 124 ~i~~kt~eeir~~f~i~ 140 (160)
...|.|..+|.+.||+.
T Consensus 18 ~~~g~s~~~IA~~lgis 34 (51)
T 1tc3_C 18 KLLNVSLHEMSRKISRS 34 (51)
T ss_dssp HHTTCCHHHHHHHHTCC
T ss_pred HHcCCCHHHHHHHHCcC
Confidence 34688999999999985
No 85
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=23.46 E-value=62 Score=18.45 Aligned_cols=39 Identities=23% Similarity=0.313 Sum_probs=24.2
Q ss_pred CHHHHHHHHHhhhhcCchhHHHHHHHHHHHHHh-CCCHHHHHHHc
Q 044292 94 DQETLLDLLLAANYLNIKDLLELTCQATADVIK-DKSPEEVRRIF 137 (160)
Q Consensus 94 ~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i~-~kt~eeir~~f 137 (160)
+.++-..|+.+-...+... =..||..+. |+|..+.|..+
T Consensus 13 T~eED~~L~~~v~~~G~~~-----W~~IA~~~~~~Rt~~qcr~r~ 52 (58)
T 2elk_A 13 GADEELLLIDACETLGLGN-----WADIADYVGNARTKEECRDHY 52 (58)
T ss_dssp CHHHHHHHHHHHHHTTTTC-----HHHHHHHHCSSCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCcCC-----HHHHHHHHCCCCCHHHHHHHH
Confidence 3333334455545455322 356788888 89999999865
No 86
>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A
Probab=23.21 E-value=59 Score=21.84 Aligned_cols=58 Identities=21% Similarity=0.185 Sum_probs=36.4
Q ss_pred CccEEEEcCCCCEEEecHHH---HHHhHHHHHHHhhcC---C------CCccccC-C---CCHHHHHHHHHHHHhchh
Q 044292 10 KKMIILKSSDGETFEVEETV---ALQSQTIRHMVEDDC---A------DSVIPLP-N---VTGTILSMVVEYCKKHVE 71 (160)
Q Consensus 10 ~~~i~l~s~DG~~~~v~~~~---a~~S~~l~~~l~~~~---~------~~~Ipl~-~---i~~~~L~~Ii~~~~~h~~ 71 (160)
.+.+++.|.||+.+.|...- ...++ .++-.| . ...+++. + ++-+.-..++++++.++.
T Consensus 38 g~~~~l~s~Dg~~Vtv~l~~p~~~~l~~----~vEViG~V~~~~tI~~~~~~~fg~~~~~fD~~~yn~lv~l~~~~~~ 111 (121)
T 3kdf_A 38 GKMFILSDGEGKNGTIELMEPLDEEISG----IVEVVGRVTAKATILCTSYVQFKEDSHPFDLGLYNEAVKIIHDFPQ 111 (121)
T ss_dssp SSEEEEECTTSCEEEEECSSCCSSCCCS----EEEEEEEECTTSCEEEEEEEECCCSSSCCCHHHHHHHHHHHHHCGG
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcccCc----EEEEEEEECCCCeEEEEEEEecCCCCcccCHHHHHHHHHHHhcCCc
Confidence 46899999999999996431 11122 222111 1 1234444 4 888999999999887653
No 87
>1vfr_A NAD(P)H\:FMN oxidoreductase; bioluminescence; HET: FMN; 1.80A {Aliivibrio fischeri} SCOP: d.90.1.1 PDB: 1v5y_A* 1v5z_A*
Probab=23.14 E-value=18 Score=25.95 Aligned_cols=34 Identities=24% Similarity=0.292 Sum_probs=22.0
Q ss_pred HHHHHhhhhcCchhHHHHHHHHHHHHHhCCCHHHHHHHcCCC-CC
Q 044292 99 LDLLLAANYLNIKDLLELTCQATADVIKDKSPEEVRRIFHIN-ND 142 (160)
Q Consensus 99 ~~Ll~AA~~L~I~~L~~~~~~~ia~~i~~kt~eeir~~f~i~-~d 142 (160)
..|+.||..||+.. +++.|-..+++++.|||+ ++
T Consensus 148 ~nl~LaA~~~Glgs----------~~~~~~~~~~v~~~l~lp~~~ 182 (218)
T 1vfr_A 148 GNALHTLARLNIDS----------TTMEGIDPELLSEIFADELKG 182 (218)
T ss_dssp HHHHHHHHHHTCEE----------EEECCSCHHHHHHHTTTTTTT
T ss_pred HHHHHHHHHcCCCc----------ccccccCHHHHHHHhCCCccc
Confidence 44555555555543 223456789999999998 65
No 88
>2w9y_A CE-FAR-7, fatty acid/retinol binding protein protein 7, isoform A, confirmed by transcript...; lipid transport; HET: CSX; 1.80A {Caenorhabditis elegans}
Probab=23.10 E-value=67 Score=22.38 Aligned_cols=48 Identities=13% Similarity=0.308 Sum_probs=31.9
Q ss_pred hhHHHHHHHHHHHHHhCC--CHHHHHHHcCCCCCCCHHHHHHHHHhcccc
Q 044292 111 KDLLELTCQATADVIKDK--SPEEVRRIFHINNDFTPQEEQEIRRENQWA 158 (160)
Q Consensus 111 ~~L~~~~~~~ia~~i~~k--t~eeir~~f~i~~d~t~eee~~~~~e~~w~ 158 (160)
..|+...-...+..+.|. +.+++|.....=.-++++-.+++++.+|-+
T Consensus 89 ~kli~~~r~l~~~~~~G~k~~~~~lK~~~~~ykaLS~~aK~dL~k~FP~I 138 (140)
T 2w9y_A 89 KKLIHMVTTTLCSLTVGKPIDDADAKRLHQEFQSLSSEDQAALRKNNPDI 138 (140)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCTHHHHHHHHHHHTSCHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCHHHHHHHHHhCcCc
Confidence 344455555556666774 888888876222337888889999988743
No 89
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=23.03 E-value=45 Score=25.42 Aligned_cols=39 Identities=13% Similarity=0.110 Sum_probs=32.2
Q ss_pred hhhcc--CCHHHHHHHHHhhhhcCchhHHHHHHHHHHHHHh
Q 044292 88 RDFVK--VDQETLLDLLLAANYLNIKDLLELTCQATADVIK 126 (160)
Q Consensus 88 ~~Fl~--~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i~ 126 (160)
.+|+. ++.+.+..++..|...+...|.+.|..+|+..+.
T Consensus 265 ~~~l~~~~~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~ 305 (312)
T 3hqi_A 265 EDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHAT 305 (312)
T ss_dssp HHHHHTTCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC-
T ss_pred HHHHHccCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 44442 6778899999999999999999999999987544
No 90
>3ge6_A Nitroreductase; structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2, oxidoreductase; HET: FMN; 1.85A {Exiguobacterium sibiricum 255-15} SCOP: d.90.1.0
Probab=22.95 E-value=17 Score=26.13 Aligned_cols=18 Identities=6% Similarity=0.351 Sum_probs=14.5
Q ss_pred hCCCHHHHHHHcCC-CCCC
Q 044292 126 KDKSPEEVRRIFHI-NNDF 143 (160)
Q Consensus 126 ~~kt~eeir~~f~i-~~d~ 143 (160)
.|-..+++++.||| ++++
T Consensus 164 ~~~~~~~v~~~L~l~p~~~ 182 (212)
T 3ge6_A 164 GGYEKDQIAEAFGMEKDRY 182 (212)
T ss_dssp CCSCHHHHHHHTTCCSSSE
T ss_pred cccCHHHHHHHhCCCCCCc
Confidence 35678999999999 7764
No 91
>2z7e_A ISCU protein, NIFU-like protein; iron-sulfur cluster, iron, biosynthesis, [2Fe-2S], asymmetric trimer, three conserved Cys; 2.30A {Aquifex aeolicus}
Probab=22.92 E-value=54 Score=23.14 Aligned_cols=37 Identities=5% Similarity=-0.033 Sum_probs=23.1
Q ss_pred HHhhhhcCchhHH-HHHHHHHHHHHhCCCHHHHHHHcC
Q 044292 102 LLAANYLNIKDLL-ELTCQATADVIKDKSPEEVRRIFH 138 (160)
Q Consensus 102 l~AA~~L~I~~L~-~~~~~~ia~~i~~kt~eeir~~f~ 138 (160)
+..+.|-.-=.-. -.++-.++++++|||++|.+++.+
T Consensus 53 I~d~~F~~~GCais~ASaS~mte~v~Gkt~~EA~~i~~ 90 (157)
T 2z7e_A 53 IEDVRFKTFGCGSAIAVSSMLTEMVKGKPIQYALNLTY 90 (157)
T ss_dssp EEEEEEEEESCTTHHHHHHHHHHHHTTSBHHHHHHCCH
T ss_pred EEEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHh
Confidence 3344444433333 334456678999999999987654
No 92
>1j2j_B ADP-ribosylation factor binding protein GGA1, ADP-ribosylation factor 1; protein transport; HET: GTP; 1.60A {Homo sapiens} SCOP: a.7.8.1
Probab=22.69 E-value=1.1e+02 Score=17.01 Aligned_cols=20 Identities=25% Similarity=0.451 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhCCCHHHHHH
Q 044292 116 LTCQATADVIKDKSPEEVRR 135 (160)
Q Consensus 116 ~~~~~ia~~i~~kt~eeir~ 135 (160)
-.++.++.+|+.+.|++++.
T Consensus 8 ekSk~L~~Ll~s~~P~Dlq~ 27 (45)
T 1j2j_B 8 EKSKMLARLLKSSHPEDLRA 27 (45)
T ss_dssp HHHHHHHHHHTCSCHHHHHH
T ss_pred HHHHHHHHHHHcCChhhHHH
Confidence 34678899999999998875
No 93
>3gag_A Putative NADH dehydrogenase, NADPH nitroreductase; FMN-dependent nitroreductase-like fold, structural genomics; HET: MSE FMN; 1.70A {Streptococcus mutans} SCOP: d.90.1.0
Probab=22.27 E-value=21 Score=25.42 Aligned_cols=19 Identities=5% Similarity=0.342 Sum_probs=14.9
Q ss_pred HhCCCHHHHHHHcCCCCCC
Q 044292 125 IKDKSPEEVRRIFHINNDF 143 (160)
Q Consensus 125 i~~kt~eeir~~f~i~~d~ 143 (160)
+.|-..+++++.|||++++
T Consensus 157 ~~~~~~~~v~~~L~lp~~~ 175 (206)
T 3gag_A 157 MRGVDFDAIKTYLDMPNGW 175 (206)
T ss_dssp BCCSCHHHHHHHTTCCTTE
T ss_pred ecccCHHHHHHHhCcCCCc
Confidence 3456789999999998664
No 94
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=22.09 E-value=55 Score=16.70 Aligned_cols=12 Identities=33% Similarity=0.681 Sum_probs=7.9
Q ss_pred CHHHHHHHHHhc
Q 044292 144 TPQEEQEIRREN 155 (160)
Q Consensus 144 t~eee~~~~~e~ 155 (160)
||||..+++.|.
T Consensus 13 tpeelkklkeea 24 (36)
T 2ki0_A 13 TPEELKKLKEEA 24 (36)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 677777666553
No 95
>2fre_A NAD(P)H-flavin oxidoreductase; FMN, structural genomics, PSI, protein struc initiative, midwest center for structural genomics; HET: FMN; 1.90A {Agrobacterium tumefaciens str} SCOP: d.90.1.1
Probab=21.41 E-value=34 Score=24.35 Aligned_cols=36 Identities=11% Similarity=0.155 Sum_probs=27.3
Q ss_pred HHHHHHHhhhhcCchhHHHHHHHHHHHHHhCCCHHHHHHHcCCCCC
Q 044292 97 TLLDLLLAANYLNIKDLLELTCQATADVIKDKSPEEVRRIFHINND 142 (160)
Q Consensus 97 ~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i~~kt~eeir~~f~i~~d 142 (160)
.+..|+.||..||+-.. ++.|-..+++++.|||+++
T Consensus 117 a~~nl~LaA~~~Glgs~----------~~~~~~~~~~~~~l~lp~~ 152 (200)
T 2fre_A 117 AWFSLAMQAHLLGYHAH----------GMGGIFKDRIVEKLDIPDG 152 (200)
T ss_dssp HHHHHHHHHHHTTCEEE----------EECCBCHHHHHHHTTCCTT
T ss_pred HHHHHHHHHHHCCccee----------eEcccCHHHHHHHcCCCCC
Confidence 45678888888888652 2345678899999999876
No 96
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=21.23 E-value=98 Score=17.96 Aligned_cols=21 Identities=10% Similarity=0.142 Sum_probs=15.4
Q ss_pred HHHHHHhCCCHHHHHHHcCCC
Q 044292 120 ATADVIKDKSPEEVRRIFHIN 140 (160)
Q Consensus 120 ~ia~~i~~kt~eeir~~f~i~ 140 (160)
.+.-.+.|+|..||-+.+|++
T Consensus 24 vl~l~~~g~s~~eIA~~l~is 44 (79)
T 1x3u_A 24 VLSAVVAGLPNKSIAYDLDIS 44 (79)
T ss_dssp HHHHHTTTCCHHHHHHHTTSC
T ss_pred HHHHHHcCCCHHHHHHHHCcC
Confidence 333346788999999999885
No 97
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=21.15 E-value=1.6e+02 Score=18.96 Aligned_cols=29 Identities=10% Similarity=0.074 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHcCCCCC
Q 044292 113 LLELTCQATADVIKDKSPEEVRRIFHINND 142 (160)
Q Consensus 113 L~~~~~~~ia~~i~~kt~eeir~~f~i~~d 142 (160)
+-...+-|++..+.|.|..+|=+.|| -+.
T Consensus 36 ~aRqiAmYL~r~~t~~Sl~~IG~~fg-RDH 64 (101)
T 3pvv_A 36 QSRQIAMYLCRELTDLSLPKIGQAFG-RDH 64 (101)
T ss_dssp HHHHHHHHHHHHHCCCCHHHHHHHTT-CCH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHC-CCH
Confidence 34455678888889999999999999 443
No 98
>2c35_A Human RPB4, DNA-directed RNA polymerase II 16 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: a.60.8.2
Probab=20.95 E-value=2.1e+02 Score=19.77 Aligned_cols=40 Identities=20% Similarity=0.252 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHcCCCC-CCCHHHHHHHHH
Q 044292 113 LLELTCQATADVIKDKSPEEVRRIFHINN-DFTPQEEQEIRR 153 (160)
Q Consensus 113 L~~~~~~~ia~~i~~kt~eeir~~f~i~~-d~t~eee~~~~~ 153 (160)
|-..-...|+++ .-.|++|+|.++.--. -+|+|+.++|-.
T Consensus 102 L~~~E~a~L~NL-~P~t~dEar~lipsl~~r~sdEeLe~ILd 142 (152)
T 2c35_A 102 LHKFELACLANL-CPETAEESKALIPSLEGRFEDEELQQILD 142 (152)
T ss_dssp CCHHHHHHHHHH-CCSSHHHHHHHCGGGTTTSCHHHHHHHHH
T ss_pred CCHHHHHHhccC-CCCCHHHHHHHHHhhccCCCHHHHHHHHH
Confidence 556666666664 5679999999876554 389998887754
No 99
>2ftc_M Mitochondrial ribosomal protein L22 isoform A; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_M
Probab=20.71 E-value=67 Score=21.16 Aligned_cols=21 Identities=14% Similarity=0.078 Sum_probs=17.8
Q ss_pred HHHHHHHHhCCCHHHHHHHcC
Q 044292 118 CQATADVIKDKSPEEVRRIFH 138 (160)
Q Consensus 118 ~~~ia~~i~~kt~eeir~~f~ 138 (160)
++.+|+.|+|+++++-..++.
T Consensus 13 ~r~va~~IrG~~v~eAl~~L~ 33 (110)
T 2ftc_M 13 MWYLAKLIRGMSIDQALAQLE 33 (110)
T ss_pred HHHHHHHHcCCcHHHHHHHHH
Confidence 357899999999999888877
No 100
>2ra2_A Putative lipoprotein; X-RAY, NESG, STR88A, Q7CPV8, structural genomics, PSI-2, protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.38.1.6
Probab=20.64 E-value=65 Score=19.32 Aligned_cols=14 Identities=14% Similarity=0.437 Sum_probs=9.2
Q ss_pred cEEEEcCCCCEEEe
Q 044292 12 MIILKSSDGETFEV 25 (160)
Q Consensus 12 ~i~l~s~DG~~~~v 25 (160)
.+.+.+.||+.+.-
T Consensus 5 ~yVitt~DG~~IvT 18 (64)
T 2ra2_A 5 NYVMHTNDGRSIVT 18 (64)
T ss_dssp CEEEEETTSCEEEC
T ss_pred CEEEEeCCCcEEEc
Confidence 46667777777653
No 101
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=20.52 E-value=72 Score=18.97 Aligned_cols=21 Identities=10% Similarity=0.154 Sum_probs=17.1
Q ss_pred HHHHHHHHhCCCHHHHHHHcC
Q 044292 118 CQATADVIKDKSPEEVRRIFH 138 (160)
Q Consensus 118 ~~~ia~~i~~kt~eeir~~f~ 138 (160)
=..||..+.|+|..++|..+.
T Consensus 31 W~~Ia~~~~~Rt~~q~k~r~~ 51 (72)
T 2cu7_A 31 WTKISKLIGSRTVLQVKSYAR 51 (72)
T ss_dssp HHHHHHHHSSSCHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHH
Confidence 367788899999999998653
No 102
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C
Probab=20.47 E-value=71 Score=22.15 Aligned_cols=61 Identities=20% Similarity=0.211 Sum_probs=35.8
Q ss_pred CCccEEEEcCCCCEEEecHHHHHHhHHHHHHHhhcC---C------CCccccC-C---CCHHHHHHHHHHHHhch
Q 044292 9 SKKMIILKSSDGETFEVEETVALQSQTIRHMVEDDC---A------DSVIPLP-N---VTGTILSMVVEYCKKHV 70 (160)
Q Consensus 9 ~~~~i~l~s~DG~~~~v~~~~a~~S~~l~~~l~~~~---~------~~~Ipl~-~---i~~~~L~~Ii~~~~~h~ 70 (160)
..+.++++|.||+.+.|...-- .+.-+...++-.| . ...+++. + ++..+..++++.+..++
T Consensus 58 ~G~~~~l~s~Dg~~VtV~l~~p-L~~~~~~~VEViG~V~~~~tI~~~~~~~fGd~~~~fD~~~yn~lv~l~~~f~ 131 (142)
T 2pi2_E 58 TGKMFILSDGEGKNGTIELMEP-LDEEISGIVEVVGRVTAKATILCTSYVQFKEDSHPFDLGLYNEAVKIIHDFP 131 (142)
T ss_dssp TSSEEEEECTTSCEEEEECSSC-CSSCCCSEEEEEEEECTTSCEEEEEEEECCCSSSCCCHHHHHHHHHHHHHCG
T ss_pred CCCEEEEEeCCCcEEEEEeCCC-CCccCCCEEEEEEEECCCCcEEEEEEEecCCCccccCHHHHHHHHHHHHhCc
Confidence 3468999999999999963210 0001112222111 1 2344554 3 88899999999987544
No 103
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=20.40 E-value=97 Score=22.87 Aligned_cols=63 Identities=8% Similarity=0.299 Sum_probs=39.5
Q ss_pred CHHHHHHHHHhhhhcCchhHHHHHH----HHHHHHH----hCCCHHHHHHHcCCCCCCCHHHHHHHHHhccccc
Q 044292 94 DQETLLDLLLAANYLNIKDLLELTC----QATADVI----KDKSPEEVRRIFHINNDFTPQEEQEIRRENQWAF 159 (160)
Q Consensus 94 ~~~~l~~Ll~AA~~L~I~~L~~~~~----~~ia~~i----~~kt~eeir~~f~i~~d~t~eee~~~~~e~~w~~ 159 (160)
+-..++.+...+.......+++.-. ..++..| ..-++.++.+.+|.+ +++|-++.-++..|..
T Consensus 149 nY~kff~l~~~~p~~~~~~~~~~l~~~vR~~~l~~i~kaY~~i~l~~~~~~L~f~---s~~e~~~f~~~~gw~i 219 (229)
T 4b0z_A 149 AFDKVASMIRSCNFPEFSYFMKIVMSMVRNEIATCAEKVYSEIPLSNATSLLYLE---NTKETEKLAEERGWDI 219 (229)
T ss_dssp CHHHHHHHHHTCCCGGGHHHHHHHHHHHHHHHHHHHHHHCSEEEHHHHHHHTTCS---SHHHHHHHHHHHTCEE
T ss_pred CHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhCCC---CHHHHHHHHHHcCCEE
Confidence 4566777777765443333433322 2222222 345899999999987 4677777778888975
No 104
>2kvc_A Putative uncharacterized protein; structural genomics, seattle structural genomi for infectious disease, ssgcid, unknown function; NMR {Mycobacterium tuberculosis}
Probab=20.30 E-value=1.9e+02 Score=18.92 Aligned_cols=27 Identities=11% Similarity=0.346 Sum_probs=18.4
Q ss_pred CCHHHHHHH-cCCCCC-CCHHHHHHHHHh
Q 044292 128 KSPEEVRRI-FHINND-FTPQEEQEIRRE 154 (160)
Q Consensus 128 kt~eeir~~-f~i~~d-~t~eee~~~~~e 154 (160)
-+..+|+.. -.+.++ -++|+.++++..
T Consensus 57 i~~~dI~~~I~~vt~~~Ps~eDI~RV~ar 85 (103)
T 2kvc_A 57 FDQIDIGVVITHFTDELPSPEDVERVRAR 85 (103)
T ss_dssp SCSSCHHHHHHSCCSSCSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 466677663 445555 578888988874
No 105
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=20.00 E-value=69 Score=20.89 Aligned_cols=15 Identities=27% Similarity=0.341 Sum_probs=13.4
Q ss_pred cEEEEcCCCCEEEec
Q 044292 12 MIILKSSDGETFEVE 26 (160)
Q Consensus 12 ~i~l~s~DG~~~~v~ 26 (160)
.|++++.+|+.|.|+
T Consensus 9 ~I~Vk~l~g~~~~v~ 23 (105)
T 1v2y_A 9 TVRVCKMDGEVMPVV 23 (105)
T ss_dssp EEEEECSSSCEEEEE
T ss_pred EEEEEecCCCEEEEE
Confidence 699999999999885
Done!