BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044293
(236 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1CMZ|A Chain A, Solution Structure Of Gaip (Galpha Interacting Protein): A
Regulator Of G Protein Signaling
Length = 152
Score = 30.4 bits (67), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 5 RVRETINNCVSRSQSDSYEDQQKALQTLA---SITRV--SPQYRSLLAQTDGAISTL 56
RVRE IN + + +++D Q + TL S R SP YR+LL D + S +
Sbjct: 93 RVREGINKKMQEPSAHTFDDAQLQIYTLMHRDSYPRFLSSPTYRALLPWVDSSSSLI 149
>pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region
And Its C-Terminal Domain
Length = 644
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 101 IQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAE 160
+Q+++ ET + + + +L+ + +G + LVK + +P + + +++L
Sbjct: 65 MQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN 124
Query: 161 LVQFHGNSTLAVR-AGAVSELIHLIGSTEAEDLAGTS 196
L+ + +AVR AG + +++ L+ T + LA T+
Sbjct: 125 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITT 161
>pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
pdb|2GL7|D Chain D, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
Length = 550
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 101 IQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAE 160
+Q+++ ET + + + +L+ + +G + LVK + +P + + +++L
Sbjct: 66 MQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN 125
Query: 161 LVQFHGNSTLAVR-AGAVSELIHLIGSTEAEDLAGTS 196
L+ + +AVR AG + +++ L+ T + LA T+
Sbjct: 126 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITT 162
>pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex
pdb|1I7X|C Chain C, Beta-CateninE-Cadherin Complex
pdb|1I7W|A Chain A, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1I7W|C Chain C, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1JPP|A Chain A, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1JPP|B Chain B, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1M1E|A Chain A, Beta-Catenin Armadillo Repeat Domain Bound To Icat
pdb|1V18|A Chain A, The Crystal Structure Of Beta-Catenin Armadillo Repeat
Complexed With A Phosphorylated Apc 20mer Repeat
Length = 538
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 101 IQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAE 160
+Q+++ ET + + + +L+ + +G + LVK + +P + + +++L
Sbjct: 69 MQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN 128
Query: 161 LVQFHGNSTLAVR-AGAVSELIHLIGSTEAEDLAGTS 196
L+ + +AVR AG + +++ L+ T + LA T+
Sbjct: 129 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITT 165
>pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|B Chain B, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|C Chain C, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
Length = 540
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 101 IQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAE 160
+Q+++ ET + + + +L+ + +G + LVK + +P + + +++L
Sbjct: 72 MQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN 131
Query: 161 LVQFHGNSTLAVR-AGAVSELIHLIGSTEAEDLAGTS 196
L+ + +AVR AG + +++ L+ T + LA T+
Sbjct: 132 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITT 168
>pdb|3IFQ|A Chain A, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
pdb|3IFQ|B Chain B, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
Length = 553
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 55/105 (52%), Gaps = 2/105 (1%)
Query: 101 IQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAE 160
+Q++S +T + +S++ +L+ + +G + LV+ +S+P + +++L
Sbjct: 70 MQNTSDLDTARCTTSILHNLSHHREGLLAIFKSGGIPALVRMLSSPVESVLFYAITTLHN 129
Query: 161 LVQFHGNSTLAVR-AGAVSELIHLIGSTEAEDLAGTSLAVLNLLA 204
L+ + + +AVR A + +++ L+ + LA T+ L LLA
Sbjct: 130 LLLYQEGAKMAVRLADGLQKMVPLLNKNNPKFLAITT-DCLQLLA 173
>pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1G3J|C Chain C, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1TH1|A Chain A, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
pdb|1TH1|B Chain B, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
Length = 532
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 101 IQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAE 160
+Q+++ ET + + + +L+ + +G + LVK + +P + + +++L
Sbjct: 70 MQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN 129
Query: 161 LVQFHGNSTLAVR-AGAVSELIHLIGSTEAEDLAGTS 196
L+ + +AVR AG + +++ L+ T + LA T+
Sbjct: 130 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITT 166
>pdb|3TX7|A Chain A, Crystal Structure Of Lrh-1BETA-Catenin Complex
Length = 527
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 101 IQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAE 160
+Q+++ ET + + + +L+ + +G + LVK + +P + + +++L
Sbjct: 66 MQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN 125
Query: 161 LVQFHGNSTLAVR-AGAVSELIHLIGSTEAEDLAGTS 196
L+ + +AVR AG + +++ L+ T + LA T+
Sbjct: 126 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITT 162
>pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta-
Catenin
Length = 533
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 101 IQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAE 160
+Q+++ ET + + + +L+ + +G + LVK + +P + + +++L
Sbjct: 70 MQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN 129
Query: 161 LVQFHGNSTLAVR-AGAVSELIHLIGSTEAEDLAGTS 196
L+ + +AVR AG + +++ L+ T + LA T+
Sbjct: 130 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITT 166
>pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1
pdb|3OUX|A Chain A, Structure Of Beta-Catenin With Phosphorylated Lef-1
Length = 540
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 101 IQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAE 160
+Q+++ ET + + + +L+ + +G + LVK + +P + + +++L
Sbjct: 71 MQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN 130
Query: 161 LVQFHGNSTLAVR-AGAVSELIHLIGSTEAEDLAGTS 196
L+ + +AVR AG + +++ L+ T + LA T+
Sbjct: 131 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITT 167
>pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4
Length = 529
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 101 IQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAE 160
+Q+++ ET + + + +L+ + +G + LVK + +P + + +++L
Sbjct: 68 MQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN 127
Query: 161 LVQFHGNSTLAVR-AGAVSELIHLIGSTEAEDLAGTS 196
L+ + +AVR AG + +++ L+ T + LA T+
Sbjct: 128 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITT 164
>pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 516
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 101 IQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAE 160
+Q+++ ET + + + +L+ + +G + LVK + +P + + +++L
Sbjct: 53 MQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN 112
Query: 161 LVQFHGNSTLAVR-AGAVSELIHLIGSTEAEDLAGTS 196
L+ + +AVR AG + +++ L+ T + LA T+
Sbjct: 113 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITT 149
>pdb|4DJS|A Chain A, Structure Of Beta-Catenin In Complex With A Stapled
Peptide Inhibitor
Length = 518
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 101 IQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAE 160
+Q+++ ET + + + +L+ + +G + LVK + +P + + +++L
Sbjct: 55 MQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN 114
Query: 161 LVQFHGNSTLAVR-AGAVSELIHLIGSTEAEDLAGTS 196
L+ + +AVR AG + +++ L+ T + LA T+
Sbjct: 115 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITT 151
>pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX
Length = 514
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 101 IQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAE 160
+Q+++ ET + + + +L+ + +G + LVK + +P + + +++L
Sbjct: 53 MQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN 112
Query: 161 LVQFHGNSTLAVR-AGAVSELIHLIGSTEAEDLAGTS 196
L+ + +AVR AG + +++ L+ T + LA T+
Sbjct: 113 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITT 149
>pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL
DomainUNPHOSPHORYLATED APC R3
Length = 519
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 101 IQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAE 160
+Q+++ ET + + + +L+ + +G + LVK + +P + + +++L
Sbjct: 57 MQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN 116
Query: 161 LVQFHGNSTLAVR-AGAVSELIHLIGSTEAEDLAGTS 196
L+ + +AVR AG + +++ L+ T + LA T+
Sbjct: 117 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITT 153
>pdb|3GG4|A Chain A, The Crystal Structure Of Glycerol Kinase From Yersinia
Pseudotuberculosis
pdb|3GG4|B Chain B, The Crystal Structure Of Glycerol Kinase From Yersinia
Pseudotuberculosis
pdb|3L0Q|A Chain A, The Crystal Structure Of Xlylulose Kinase From Yersinia
Pseudotuberculosis
pdb|3L0Q|B Chain B, The Crystal Structure Of Xlylulose Kinase From Yersinia
Pseudotuberculosis
Length = 554
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 44/112 (39%), Gaps = 4/112 (3%)
Query: 95 YRLNWIIQSSSSQETVKLASSLICSLAMLD--KNKARFGVAGTVQVLVKAVSAPSNPAGH 152
Y LN QS++ + S C A+L+ KNK +L + P N A
Sbjct: 317 YWLNEGGQSATGALIDHIIQSHPCYPALLEQAKNKGETIYEALNYILRQXAGEPENIA-- 374
Query: 153 HLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLA 204
L + + L FHGN + + L ST ED A LA + LA
Sbjct: 375 FLTNDIHXLPYFHGNRSPRANPNLTGIITGLKLSTTPEDXALRYLATIQALA 426
>pdb|3SLA|A Chain A, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|B Chain B, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|C Chain C, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|D Chain D, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|E Chain E, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
Length = 168
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 101 IQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAE 160
+Q+++ ET + + + +L+ + +G + LVK + +P + + +++L
Sbjct: 64 MQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN 123
Query: 161 LVQFHGNSTLAVR-AGAVSELIHLIGSTEAEDLAGTS 196
L+ + +AVR AG + +++ L+ T + LA T+
Sbjct: 124 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITT 160
>pdb|3SL9|A Chain A, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|B Chain B, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|E Chain E, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|G Chain G, X-Ray Structure Of Beta Catenin In Complex With Bcl9
Length = 167
Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 101 IQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAE 160
+Q+++ ET + + + +L+ + +G + LVK + +P + + +++L
Sbjct: 64 MQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN 123
Query: 161 LVQFHGNSTLAVR-AGAVSELIHLIGSTEAEDLAGTS 196
L+ + +AVR AG + +++ L+ T + LA T+
Sbjct: 124 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITT 160
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.126 0.333
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,952,162
Number of Sequences: 62578
Number of extensions: 142492
Number of successful extensions: 473
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 469
Number of HSP's gapped (non-prelim): 32
length of query: 236
length of database: 14,973,337
effective HSP length: 96
effective length of query: 140
effective length of database: 8,965,849
effective search space: 1255218860
effective search space used: 1255218860
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)