BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044293
(236 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5VRH9|PUB12_ORYSJ U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica
GN=PUB12 PE=2 SV=1
Length = 611
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 122/224 (54%), Gaps = 6/224 (2%)
Query: 14 VSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLS 73
++R +S + ++Q+ A + + + + R +A+ GAI L+ L SS P + +++
Sbjct: 329 MNRLRSGNQDEQRAAAGEIRLLAKRNVNNRICIAEA-GAIPLLVNLLSSSDPRTQEHAVT 387
Query: 74 ILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVA 133
LLNLS++ + K S+ I ++ ++++ S ET + A++ + SL+++D+NK G A
Sbjct: 388 ALLNLSIHENNKASIVDSHAIPKIVEVLKTGS-METRENAAATLFSLSVVDENKVTIGAA 446
Query: 134 GTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIH-LIGSTEAEDL 192
G + L+ + S +++ L + GN AV+AG V L++ L+ T +
Sbjct: 447 GAIPPLINLLCDGSPRGKKDAATAIFNLCIYQGNKVRAVKAGIVIHLMNFLVDPTGG--M 504
Query: 193 AGTSLAVLNLLARFDEGMIALTKTDQIVSLMVDVLKGRSMFSKE 236
+L++L++LA EG I + +++ I L V+V+K S ++E
Sbjct: 505 IDEALSLLSILAGNPEGKIVIARSEPIPPL-VEVIKTGSPRNRE 547
>sp|Q8GUG9|PUB11_ARATH U-box domain-containing protein 11 OS=Arabidopsis thaliana GN=PUB11
PE=2 SV=2
Length = 612
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 108/210 (51%), Gaps = 2/210 (0%)
Query: 14 VSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLS 73
V R S S ED++ A+ + S+++ S R L+A+ GAI L+ L S + +++
Sbjct: 337 VQRLSSRSTEDRRNAVSEIRSLSKRSTDNRILIAEA-GAIPVLVNLLTSEDVATQENAIT 395
Query: 74 ILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVA 133
+LNLS+ + K+ + + + ++++ + + A++L SL++ D+NK G +
Sbjct: 396 CVLNLSIYENNKELIMFAGAVTSIVQVLRAGTMEARENAAATLF-SLSLADENKIIIGGS 454
Query: 134 GTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLA 193
G + LV + + ++L L +HGN AVRAG V+ L+ ++ + +
Sbjct: 455 GAIPALVDLLENGTPRGKKDAATALFNLCIYHGNKGRAVRAGIVTALVKMLSDSTRHRMV 514
Query: 194 GTSLAVLNLLARFDEGMIALTKTDQIVSLM 223
+L +L++LA + A+ K + + +L+
Sbjct: 515 DEALTILSVLANNQDAKSAIVKANTLPALI 544
Score = 32.0 bits (71), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 64/129 (49%), Gaps = 7/129 (5%)
Query: 103 SSSSQETVKLASSLICSLAMLD-KNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAEL 161
SS S E + A S I SL+ N+ AG + VLV +++ + ++ + L
Sbjct: 341 SSRSTEDRRNAVSEIRSLSKRSTDNRILIAEAGAIPVLVNLLTSEDVATQENAITCVLNL 400
Query: 162 VQFHGNSTLAVRAGAVSELIHLI--GSTEAEDLAGTSLAVLNLLARFDEGMIALTKTDQI 219
+ N L + AGAV+ ++ ++ G+ EA + A +L L+L DE I + + I
Sbjct: 401 SIYENNKELIMFAGAVTSIVQVLRAGTMEARENAAATLFSLSLA---DENKIIIGGSGAI 457
Query: 220 VSLMVDVLK 228
+L VD+L+
Sbjct: 458 PAL-VDLLE 465
>sp|Q9SNC6|PUB13_ARATH U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13
PE=1 SV=1
Length = 660
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 108/223 (48%), Gaps = 3/223 (1%)
Query: 1 MSAPRVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLS 60
S+P I + + R + EDQ+ A + + + + R +A+ GAI L+GL
Sbjct: 345 FSSPAEANKIEDLMWRLAYGNPEDQRSAAGEIRLLAKRNADNRVAIAEA-GAIPLLVGLL 403
Query: 61 KSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSL 120
+ I+ S++ LLNLS+ + K ++ S I + +++ S + A++L SL
Sbjct: 404 STPDSRIQEHSVTALLNLSICENNKGAIVSAGAIPGIVQVLKKGSMEARENAAATLF-SL 462
Query: 121 AMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSEL 180
+++D+NK G G + LV ++ + ++L L + GN A+RAG + L
Sbjct: 463 SVIDENKVTIGALGAIPPLVVLLNEGTQRGKKDAATALFNLCIYQGNKGKAIRAGVIPTL 522
Query: 181 IHLIGSTEAEDLAGTSLAVLNLLARFDEGMIALTKTDQIVSLM 223
L+ + + +LA+L +L+ EG + +D + SL+
Sbjct: 523 TRLL-TEPGSGMVDEALAILAILSSHPEGKAIIGSSDAVPSLV 564
>sp|Q9C9A6|PUB10_ARATH U-box domain-containing protein 10 OS=Arabidopsis thaliana GN=PUB10
PE=2 SV=1
Length = 628
Score = 60.8 bits (146), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 109/216 (50%), Gaps = 4/216 (1%)
Query: 14 VSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPI-IRTLSL 72
V + S S ED++ A+ + S+++ S R L+A+ GAI L+ L S + ++
Sbjct: 347 VCKLSSQSIEDRRTAVSEIRSLSKRSTDNRILIAEA-GAIPVLVKLLTSDGDTETQENAV 405
Query: 73 SILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGV 132
+ +LNLS+ K+ + + + ++++ S + A++L SL++ D+NK G
Sbjct: 406 TCILNLSIYEHNKELIMLAGAVTSIVLVLRAGSMEARENAAATLF-SLSLADENKIIIGA 464
Query: 133 AGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDL 192
+G + LV + S ++L L + GN AVRAG V L+ ++ + +E +
Sbjct: 465 SGAIMALVDLLQYGSVRGKKDAATALFNLCIYQGNKGRAVRAGIVKPLVKMLTDSSSERM 524
Query: 193 AGTSLAVLNLLARFDEGMIALTKTDQIVSLMVDVLK 228
A +L +L++LA A+ + + I L +D L+
Sbjct: 525 ADEALTILSVLASNQVAKTAILRANAIPPL-IDCLQ 559
>sp|Q5XEZ8|PUB2_ARATH U-box domain-containing protein 2 OS=Arabidopsis thaliana GN=PUB2
PE=2 SV=1
Length = 707
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 113/219 (51%), Gaps = 4/219 (1%)
Query: 18 QSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLN 77
+S S + Q++A + + R S R ++A+ + AI +L+ L S+ I+ +++ LLN
Sbjct: 431 KSSSLDTQREATARIRILARNSTDNRIVIARCE-AIPSLVSLLYSTDERIQADAVTCLLN 489
Query: 78 LSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQ 137
LS+N + K +A I L ++++ +E +++ + SL+++++ K G AG ++
Sbjct: 490 LSINDNNKSLIAESGAIVPLIHVLKTGYLEEAKANSAATLFSLSVIEEYKTEIGEAGAIE 549
Query: 138 VLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSL 197
LV + + S ++L L H N T + AGAV L+ L+ A + ++
Sbjct: 550 PLVDLLGSGSLSGKKDAATALFNLSIHHENKTKVIEAGAVRYLVELMDP--AFGMVEKAV 607
Query: 198 AVLNLLARFDEGMIALTKTDQIVSLMVDVLKGRSMFSKE 236
VL LA EG IA+ + I ++V+V++ S KE
Sbjct: 608 VVLANLATVREGKIAIGEEGGI-PVLVEVVELGSARGKE 645
>sp|Q9FJP6|PUB38_ARATH U-box domain-containing protein 38 OS=Arabidopsis thaliana GN=PUB38
PE=1 SV=1
Length = 556
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 108/219 (49%), Gaps = 19/219 (8%)
Query: 24 DQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPD 83
DQ++ L + +TR + + R L + +S L + S +++T +L+ L+NLSL D
Sbjct: 240 DQEQGLIMMRKMTRTNDEARVSLC-SPRILSLLKNMIVSRYSLVQTNALASLVNLSL--D 296
Query: 84 LKQSLASMETIYRLNWI-----IQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQV 138
K L TI RL ++ + S S+E + A+ I SL++ D NK GV G +Q
Sbjct: 297 KKNKL----TIVRLGFVPILIDVLKSGSREAQEHAAGTIFSLSLEDDNKMPIGVLGALQP 352
Query: 139 LVKAV-SAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSL 197
L+ A+ +A S+ H +L L N + VR GAV L ++ S E+ A +L
Sbjct: 353 LLHALRAAESDRTRHDSALALYHLTLNQTNRSKLVRLGAVPALFSMVRSGES---ASRAL 409
Query: 198 AVLNLLARFDEGMIALTKTDQIVSLMVDVLKGRSMFSKE 236
V+ LA EG A+ + + L V K R +++E
Sbjct: 410 LVICNLACCSEGRSAMLDANAVAIL---VGKLREEWTEE 445
>sp|Q9ZV31|PUB12_ARATH U-box domain-containing protein 12 OS=Arabidopsis thaliana GN=PUB12
PE=2 SV=1
Length = 654
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 68/131 (51%), Gaps = 2/131 (1%)
Query: 106 SQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFH 165
S E + A++ + SL+++D+NK G AG + LV +S S ++L L F
Sbjct: 453 SMEARENAAATLFSLSVIDENKVTIGAAGAIPPLVTLLSEGSQRGKKDAATALFNLCIFQ 512
Query: 166 GNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGMIALTKTDQIVSLMVD 225
GN AVRAG V L+ L+ E+ + SL++L +L+ +G + D V ++VD
Sbjct: 513 GNKGKAVRAGLVPVLMRLLTEPES-GMVDESLSILAILSSHPDGKSEVGAAD-AVPVLVD 570
Query: 226 VLKGRSMFSKE 236
++ S +KE
Sbjct: 571 FIRSGSPRNKE 581
>sp|Q8VZ40|PUB14_ARATH U-box domain-containing protein 14 OS=Arabidopsis thaliana GN=PUB14
PE=1 SV=1
Length = 632
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 107/214 (50%), Gaps = 4/214 (1%)
Query: 23 EDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNP 82
E Q+ A L + + + R +A+ GAI L+ L S P + S++ LLNLS+N
Sbjct: 360 EQQRAAAGELRLLAKRNVDNRVCIAEA-GAIPLLVELLSSPDPRTQEHSVTALLNLSINE 418
Query: 83 DLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKA 142
K ++ I + ++++ S + A++L SL+++D+NK G AG +Q L+
Sbjct: 419 GNKGAIVDAGAITDIVEVLKNGSMEARENAAATLF-SLSVIDENKVAIGAAGAIQALISL 477
Query: 143 VSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNL 202
+ + +++ L + GN + AV+ G V L L+ + +LA+L +
Sbjct: 478 LEEGTRRGKKDAATAIFNLCIYQGNKSRAVKGGIVDPLTRLLKDA-GGGMVDEALAILAI 536
Query: 203 LARFDEGMIALTKTDQIVSLMVDVLKGRSMFSKE 236
L+ EG A+ + + I ++V++++ S ++E
Sbjct: 537 LSTNQEGKTAIAEAESI-PVLVEIIRTGSPRNRE 569
>sp|Q0IMG9|SL11_ORYSJ E3 ubiquitin-protein ligase SPL11 OS=Oryza sativa subsp. japonica
GN=SPL11 PE=1 SV=2
Length = 694
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 107/217 (49%), Gaps = 3/217 (1%)
Query: 7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPI 66
R I+ +S+ S E+Q+ A L + + + R +A+ GAI LL L SS
Sbjct: 366 RANIDALLSKLCSPDTEEQRSAAAELRLLAKRNANNRICIAEA-GAIPLLLSLLSSSDLR 424
Query: 67 IRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKN 126
+ +++ LLNLS++ D K S+ S + + ++++ S + A++L SL+++D+
Sbjct: 425 TQEHAVTALLNLSIHEDNKASIISSGAVPSIVHVLKNGSMEARENAAATLF-SLSVIDEY 483
Query: 127 KARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGS 186
K G G + LV + S ++L L + GN A+RAG V ++ L+ +
Sbjct: 484 KVTIGGMGAIPALVVLLGEGSQRGKKDAAAALFNLCIYQGNKGRAIRAGLVPLIMGLVTN 543
Query: 187 TEAEDLAGTSLAVLNLLARFDEGMIALTKTDQIVSLM 223
L ++A+L++L+ EG A+ + + L+
Sbjct: 544 PTGA-LMDEAMAILSILSSHPEGKAAIGAAEPVPVLV 579
>sp|A2ZLU6|SL11_ORYSI Protein spotted leaf 11 OS=Oryza sativa subsp. indica GN=SPL11 PE=1
SV=2
Length = 694
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 107/217 (49%), Gaps = 3/217 (1%)
Query: 7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPI 66
R I+ +S+ S E+Q+ A L + + + R +A+ GAI LL L SS
Sbjct: 366 RANIDALLSKLCSPDTEEQRSAAAELRLLAKRNANNRICIAEA-GAIPLLLSLLSSSDLR 424
Query: 67 IRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKN 126
+ +++ LLNLS++ D K S+ S + + ++++ S + A++L SL+++D+
Sbjct: 425 TQEHAVTALLNLSIHEDNKASIISSGAVPSIVHVLKNGSMEARENAAATLF-SLSVIDEY 483
Query: 127 KARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGS 186
K G G + LV + S ++L L + GN A+RAG V ++ L+ +
Sbjct: 484 KVTIGGMGAIPALVVLLGEGSQRGKKDAAAALFNLCIYQGNKGRAIRAGLVPLIMGLVTN 543
Query: 187 TEAEDLAGTSLAVLNLLARFDEGMIALTKTDQIVSLM 223
L ++A+L++L+ EG A+ + + L+
Sbjct: 544 PTGA-LMDEAMAILSILSSHPEGKAAIGAAEPVPVLV 579
>sp|Q9SRT0|PUB9_ARATH U-box domain-containing protein 9 OS=Arabidopsis thaliana GN=PUB9
PE=1 SV=1
Length = 460
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 89/176 (50%), Gaps = 6/176 (3%)
Query: 7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLG-LSKSSSP 65
RE N+ + + S + +DQ+ A + L +TR ++R+L ++ I+ L+ L S+P
Sbjct: 168 REIFNSLLCKVSSSNLQDQKSAAKELRLLTRKGTEFRALFGESPDEITRLVNPLLHGSNP 227
Query: 66 --IIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQS--SSSQETVKLASSLICSLA 121
++ ++ LLN+S++ D + L E + +I + + T A++ I +L+
Sbjct: 228 DEKLQEDVVTTLLNISIHDDSNKKLVC-ENPNVIPLLIDALRRGTVATRSNAAAAIFTLS 286
Query: 122 MLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAV 177
LD NK G +G ++ L+ + + A + +++ L H N + AVR GAV
Sbjct: 287 ALDSNKVLIGKSGILKPLIDLLEEGNPLAIKDVAAAIFTLCIAHENRSRAVRDGAV 342
>sp|Q681N2|PUB15_ARATH U-box domain-containing protein 15 OS=Arabidopsis thaliana GN=PUB15
PE=2 SV=2
Length = 660
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 82/159 (51%), Gaps = 2/159 (1%)
Query: 19 SDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNL 78
S E+Q+++++ + + R +P+ R L+A GAI L+ L I+ +++ LLNL
Sbjct: 390 SSQLEEQRRSVKQMRLLARENPENRVLIANA-GAIPLLVQLLSYPDSGIQENAVTTLLNL 448
Query: 79 SLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQV 138
S++ K+ +++ I + I+++ + + A++L SL+MLD+NK G++ +
Sbjct: 449 SIDEVNKKLISNEGAIPNIIEILENGNREARENSAAALF-SLSMLDENKVTIGLSNGIPP 507
Query: 139 LVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAV 177
LV + + L++L L N A+ AG V
Sbjct: 508 LVDLLQHGTLRGKKDALTALFNLSLNSANKGRAIDAGIV 546
>sp|O80742|PUB19_ARATH U-box domain-containing protein 19 OS=Arabidopsis thaliana GN=PUB19
PE=2 SV=1
Length = 686
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 99/201 (49%), Gaps = 10/201 (4%)
Query: 23 EDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNP 82
E+ KAL + +T+ S YRS L + G + +L+ + +S P I+ +++ ++NLS +
Sbjct: 389 EEMVKALVEIRILTKTSTFYRSCLVEA-GVVESLMKILRSDDPRIQENAMAGIMNLSKDI 447
Query: 83 DLKQSLASME--TIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFG-----VAGT 135
K + + + + ++ + +E+ + A++ + L+ L G + G
Sbjct: 448 AGKTRIVGEDGGGLRLIVEVLNDGARRESRQYAAAALFYLSSLGDYSRLIGEISDAIPGL 507
Query: 136 VQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAED-LAG 194
V++ VK+ + + L++ + L+ N + AG V L+ L+ S E D +
Sbjct: 508 VRI-VKSCDYGDSAKRNALIAIRSLLMNQPDNHWRILAAGIVPVLLDLVKSEEISDGVTA 566
Query: 195 TSLAVLNLLARFDEGMIALTK 215
S+A+L +A + +GMI++ +
Sbjct: 567 DSMAILAKMAEYPDGMISVLR 587
>sp|Q9STT1|PUB39_ARATH U-box domain-containing protein 39 OS=Arabidopsis thaliana GN=PUB39
PE=2 SV=1
Length = 509
Score = 39.3 bits (90), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 82/167 (49%), Gaps = 3/167 (1%)
Query: 24 DQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPD 83
D ++ L L TR + R L TD +S L L S I++T + + ++NLSL
Sbjct: 199 DHEQGLIQLRKTTRSNETTRISLC-TDRILSLLRSLIVSRYNIVQTNAAASIVNLSLEKP 257
Query: 84 LKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAV 143
K + + L +++S S++ + +L SLA+ ++NK GV G V+ L+ A+
Sbjct: 258 NKLKIVRSGFVPLLIDVLKSGSTEAQEHVIGALF-SLAVEEENKMVIGVLGAVEPLLHAL 316
Query: 144 -SAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEA 189
S+ S A +L L N + V+AGAV ++ +I S E+
Sbjct: 317 RSSESERARQDAALALYHLSLIPNNRSRLVKAGAVPMMLSMIRSGES 363
Score = 32.0 bits (71), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%)
Query: 113 ASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAV 172
A++ I +L++ NK + +G V +L+ + + S A H++ +L L N +
Sbjct: 245 AAASIVNLSLEKPNKLKIVRSGFVPLLIDVLKSGSTEAQEHVIGALFSLAVEEENKMVIG 304
Query: 173 RAGAVSELIHLIGSTEAE 190
GAV L+H + S+E+E
Sbjct: 305 VLGAVEPLLHALRSSESE 322
>sp|Q8GWV5|PUB3_ARATH U-box domain-containing protein 3 OS=Arabidopsis thaliana GN=PUB3
PE=2 SV=2
Length = 760
Score = 38.9 bits (89), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 88/187 (47%), Gaps = 5/187 (2%)
Query: 51 GAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETV 110
GAI+ LL L S + + +++ LLNLS++ K + + I L ++ + + +
Sbjct: 514 GAITPLLSLLYSEEKLTQEHAVTALLNLSISELNKAMIVEVGAIEPLVHVLNTGNDRAKE 573
Query: 111 KLASSLICSLAMLDKNKARFGVA-GTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNST 169
A+SL SL++L N+ R G + +Q LV + + S+L L H N
Sbjct: 574 NSAASLF-SLSVLQVNRERIGQSNAAIQALVNLLGKGTFRGKKDAASALFNLSITHDNKA 632
Query: 170 LAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGMIALTKTDQIVSLMVDVLKG 229
V+A AV L+ L+ ++ ++A+L L+ EG A+ + I L+V+ +
Sbjct: 633 RIVQAKAVKYLVELLDPD--LEMVDKAVALLANLSAVGEGRQAIVREGGI-PLLVETVDL 689
Query: 230 RSMFSKE 236
S KE
Sbjct: 690 GSQRGKE 696
>sp|O22161|ADLO1_ARATH Protein ARABIDILLO 1 OS=Arabidopsis thaliana GN=FBX5 PE=1 SV=1
Length = 930
Score = 38.1 bits (87), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 73/168 (43%), Gaps = 6/168 (3%)
Query: 46 LAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSS 105
+ Q GA+ L+ L+KS +R + L NLS + ++S++ + L + QS S
Sbjct: 605 VGQEAGALEALVQLTKSPHEGVRQEAAGALWNLSFDDKNRESISVAGGVEALVALAQSCS 664
Query: 106 SQET--VKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQ 163
+ T + A+ + L++ + N G G V L+ + + +L L
Sbjct: 665 NASTGLQERAAGALWGLSVSEANSVAIGREGGVPPLIALARSEAEDVHETAAGALWNLAF 724
Query: 164 FHGNSTLAVRAGAVSELIHLIGST---EAEDLAGTSLAVLNLLARFDE 208
GN+ V G V L+HL S+ A +A +LA + R DE
Sbjct: 725 NPGNALRIVEEGGVPALVHLCSSSVSKMARFMAALALAYM-FDGRMDE 771
>sp|O81902|PUB8_ARATH U-box domain-containing protein 8 OS=Arabidopsis thaliana GN=PUB8
PE=2 SV=1
Length = 374
Score = 37.4 bits (85), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 103/214 (48%), Gaps = 10/214 (4%)
Query: 17 SQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILL 76
SQS S + ++L L +T+ R + ++ GA+ L S + +++ SLS+LL
Sbjct: 103 SQSSSNASKLESLTRLVRLTKRDSSIRRKVTES-GAVRAALDCVDSCNQVLQEKSLSLLL 161
Query: 77 NLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFG-VAGT 135
NLSL D K L + I R+ +++ S + +A++L+ SLA+++ NKA G
Sbjct: 162 NLSLEDDNKVGLVADGVIRRIVTVLRVGSP-DCKAIAATLLTSLAVVEVNKATIGSYPDA 220
Query: 136 VQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLA-G 194
+ LV + ++ ++L L F N V G+V L+ EA D
Sbjct: 221 ISALVSLLRVGNDRERKESATALYALCSFPDNRKRVVDCGSVPILV------EAADSGLE 274
Query: 195 TSLAVLNLLARFDEGMIALTKTDQIVSLMVDVLK 228
++ VL LL + G ++K V ++V+VL+
Sbjct: 275 RAVEVLGLLVKCRGGREEMSKVSGFVEVLVNVLR 308
>sp|Q9FL17|PUB40_ARATH U-box domain-containing protein 40 OS=Arabidopsis thaliana GN=PUB40
PE=2 SV=2
Length = 550
Score = 36.6 bits (83), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 77/167 (46%), Gaps = 2/167 (1%)
Query: 18 QSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLN 77
+S+ + ++AL ++ ITR+ R L T IS L L S ++ ++L+N
Sbjct: 238 KSNRISEIEEALISIRRITRIDESSRISLCTTR-VISALKSLIVSRYATVQVNVTAVLVN 296
Query: 78 LSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQ 137
LSL K + + L +++ S E + ++ +I SLA+ D+NK GV G ++
Sbjct: 297 LSLEKSNKVKIVRSGIVPPLIDVLKCGSV-EAQEHSAGVIFSLALEDENKTAIGVLGGLE 355
Query: 138 VLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLI 184
L+ + + H +L L N V+ GAV L+ ++
Sbjct: 356 PLLHLIRVGTELTRHDSALALYHLSLVQSNRGKLVKLGAVQMLLGMV 402
>sp|Q757R0|VAC8_ASHGO Vacuolar protein 8 OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=VAC8 PE=3 SV=3
Length = 568
Score = 35.4 bits (80), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 78/175 (44%), Gaps = 12/175 (6%)
Query: 19 SDSYEDQQKALQTLASITR--VSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILL 76
SD+ Q+ A A IT V P R +L +L L +S P I+ + + L
Sbjct: 58 SDNLNLQRSAALAFAEITEKYVRPVDREVL-------EPILILLQSHDPQIQIAACAALG 110
Query: 77 NLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKL-ASSLICSLAMLDKNKARFGVAGT 135
NL++N + K + M + L I Q S+ V+ A I +LA D NKA+ +G
Sbjct: 111 NLAVNNENKILIVEMGGLEPL--IEQMKSNNVEVQCNAVGCITNLATQDDNKAKIAHSGA 168
Query: 136 VQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAE 190
+ L K + + + +L + N V AGAV L+ L+ S++A+
Sbjct: 169 LVPLTKLAKSKNIRVQRNATGALLNMTHSGENRKELVDAGAVPVLVSLLSSSDAD 223
>sp|A6S9T6|ARGJ2_BOTFB Arginine biosynthesis bifunctional protein ArgJ 2, mitochondrial
OS=Botryotinia fuckeliana (strain B05.10) GN=BC1G_09566
PE=3 SV=1
Length = 479
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 100 IIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLA 159
I+ +S S + + LI +A L K R G T + ++ AP+ PAG H+ S +A
Sbjct: 302 ILAASQSADFIAFQRILIEFMADLAKLVVRDGEGATKFITIRVRGAPTYPAGKHIASVIA 361
Query: 160 ELVQF 164
V F
Sbjct: 362 RSVLF 366
>sp|A7EDG9|ARGJ2_SCLS1 Arginine biosynthesis bifunctional protein ArgJ 2, mitochondrial
OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 /
Ss-1) GN=SS1G_03359 PE=3 SV=1
Length = 489
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%)
Query: 104 SSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQ 163
S S++ + LI +A L K R G T + ++ AP+ PAG H+ S +A V
Sbjct: 313 SQSEDFIAFQRMLIEFMADLAKLVVRDGEGATKFITIRVRGAPTYPAGKHIASVIARSVL 372
Query: 164 F 164
F
Sbjct: 373 F 373
>sp|Q9M224|ADLO2_ARATH Protein ARABIDILLO 2 OS=Arabidopsis thaliana GN=At3g60350 PE=2 SV=1
Length = 928
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 76/169 (44%), Gaps = 8/169 (4%)
Query: 46 LAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSS 105
+ Q GA+ L+ L++S ++ + L NL+ + ++S+A+ + L + +SSS
Sbjct: 596 VGQEAGALEALVQLTQSPHEGVKQEAAGALWNLAFDDKNRESIAAFGGVEALVALAKSSS 655
Query: 106 SQET---VKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELV 162
+ T ++A +L L++ + N G G + L+ V + + +L L
Sbjct: 656 NASTGLQERVAGALW-GLSVSEANSIAIGHEGGIPPLIALVRSEAEDVHETAAGALWNLS 714
Query: 163 QFHGNSTLAVRAGAVSELIHLIGST---EAEDLAGTSLAVLNLLARFDE 208
GN+ V G V L+ L S+ A +A +LA + R DE
Sbjct: 715 FNPGNALRIVEEGGVVALVQLCSSSVSKMARFMAALALAYM-FDGRMDE 762
>sp|Q32CJ6|MUTS_SHIDS DNA mismatch repair protein MutS OS=Shigella dysenteriae serotype 1
(strain Sd197) GN=mutS PE=3 SV=1
Length = 853
Score = 32.0 bits (71), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Query: 26 QKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLK 85
++A Q L + +SP + Q DG +LL + + +SP + L +L+PD
Sbjct: 787 KRARQKLRELENISPN--AAATQVDGTQMSLLSVPEETSPAVEALE-------NLDPDSL 837
Query: 86 QSLASMETIYRLNWII 101
++E IYRL ++
Sbjct: 838 TPRQALEWIYRLKSLV 853
>sp|Q9SV36|ARK1_ARATH Armadillo repeat-containing kinesin-like protein 1 OS=Arabidopsis
thaliana GN=ARK1 PE=1 SV=2
Length = 1051
Score = 32.0 bits (71), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 82/196 (41%), Gaps = 33/196 (16%)
Query: 52 AISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVK 111
I +L L KS ++ ++ ++ NL+ + + + L ++QSS + ++
Sbjct: 803 GIQKILQLIKSEDLEVQIQAVKVVANLAAEEANQVKIVEEGGVEALLMLVQSSQNSTILR 862
Query: 112 LASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLA 171
+AS I +LAM +K++ G Q+L K V+ +P TL
Sbjct: 863 VASGAIANLAMNEKSQDLIMNKGGAQLLAKMVTKTDDP------------------QTLR 904
Query: 172 VRAGAVSELIHLIGS-------TEAEDLAG----TSLAVLNLLARFDEGMIALTKTDQIV 220
+ AGA L +L G+ E E + G ++++A+ GM K +
Sbjct: 905 MVAGA---LANLCGNEKFLKLLKEEEGIKGLLTMAQSGNIDIIAQVARGMANFAKC-ETR 960
Query: 221 SLMVDVLKGRSMFSKE 236
+M KGRS+ +E
Sbjct: 961 EIMQGRRKGRSLLLEE 976
>sp|Q9SFX2|PUB43_ARATH U-box domain-containing protein 43 OS=Arabidopsis thaliana GN=PUB43
PE=2 SV=1
Length = 811
Score = 31.6 bits (70), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 64/125 (51%), Gaps = 3/125 (2%)
Query: 18 QSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLN 77
+S S+E + KALQTL + + ++++A+ D + + LS+ S R ++S+L
Sbjct: 156 KSSSHEVRCKALQTLQVVVEGDEESKAIVAEGDTVRTIVKFLSQEPSK-GREAAVSVLFE 214
Query: 78 LSLNPDLKQSLASMETIYRLNWIIQSSSSQE--TVKLASSLICSLAMLDKNKARFGVAGT 135
LS + L + + S+ L + SS S+ TV+ A + +L ++N + + G
Sbjct: 215 LSKSEALCEKIGSIHGAIILLVGLTSSKSENVSTVEKADKTLTNLERSEENVRQMAINGR 274
Query: 136 VQVLV 140
+Q L+
Sbjct: 275 LQPLL 279
>sp|B7LWH8|MUTS_ESCF3 DNA mismatch repair protein MutS OS=Escherichia fergusonii (strain
ATCC 35469 / DSM 13698 / CDC 0568-73) GN=mutS PE=3 SV=1
Length = 853
Score = 31.6 bits (70), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Query: 26 QKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLK 85
++A Q L + +SP + Q DG +LL + + +SP + L +L+PD
Sbjct: 787 KRARQKLRELESISPN--AAATQVDGTQMSLLSVPEETSPAVEALE-------NLDPDSL 837
Query: 86 QSLASMETIYRLNWII 101
++E IYRL ++
Sbjct: 838 TPRQALEWIYRLKSLV 853
>sp|B7N6W4|MUTS_ECOLU DNA mismatch repair protein MutS OS=Escherichia coli O17:K52:H18
(strain UMN026 / ExPEC) GN=mutS PE=3 SV=1
Length = 853
Score = 31.6 bits (70), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Query: 26 QKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLK 85
++A Q L + +SP + Q DG +LL + + +SP + L +L+PD
Sbjct: 787 KRARQKLRELESISPN--AAATQVDGTQMSLLSVPEETSPAVEALE-------NLDPDSL 837
Query: 86 QSLASMETIYRLNWII 101
++E IYRL ++
Sbjct: 838 TPRQALEWIYRLKSLV 853
>sp|Q0TEC9|MUTS_ECOL5 DNA mismatch repair protein MutS OS=Escherichia coli O6:K15:H31
(strain 536 / UPEC) GN=mutS PE=3 SV=1
Length = 853
Score = 31.6 bits (70), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Query: 26 QKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLK 85
++A Q L + +SP + Q DG +LL + + +SP + L +L+PD
Sbjct: 787 KRARQKLRELESISPN--AAATQVDGTQMSLLSVPEETSPAVEALE-------NLDPDSL 837
Query: 86 QSLASMETIYRLNWII 101
++E IYRL ++
Sbjct: 838 TPRQALEWIYRLKSLV 853
>sp|Q3YYC9|MUTS_SHISS DNA mismatch repair protein MutS OS=Shigella sonnei (strain Ss046)
GN=mutS PE=3 SV=1
Length = 853
Score = 31.6 bits (70), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Query: 26 QKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLK 85
++A Q L + +SP + Q DG +LL + + +SP + L +L+PD
Sbjct: 787 KRARQKLRELESISPN--AAATQVDGTQMSLLSVPEETSPAVEALE-------NLDPDSL 837
Query: 86 QSLASMETIYRLNWII 101
++E IYRL ++
Sbjct: 838 TPRQALEWIYRLKSLV 853
>sp|Q8FEL3|MUTS_ECOL6 DNA mismatch repair protein MutS OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=mutS PE=3 SV=1
Length = 853
Score = 31.6 bits (70), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Query: 26 QKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLK 85
++A Q L + +SP + Q DG +LL + + +SP + L +L+PD
Sbjct: 787 KRARQKLRELESISPN--AAATQVDGTQMSLLSVPEETSPAVEALE-------NLDPDSL 837
Query: 86 QSLASMETIYRLNWII 101
++E IYRL ++
Sbjct: 838 TPRQALEWIYRLKSLV 853
>sp|B7LEE7|MUTS_ECO55 DNA mismatch repair protein MutS OS=Escherichia coli (strain 55989
/ EAEC) GN=mutS PE=3 SV=1
Length = 853
Score = 31.6 bits (70), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Query: 26 QKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLK 85
++A Q L + +SP + Q DG +LL + + +SP + L +L+PD
Sbjct: 787 KRARQKLRELESISPN--AAATQVDGTQMSLLSVPEETSPAVEALE-------NLDPDSL 837
Query: 86 QSLASMETIYRLNWII 101
++E IYRL ++
Sbjct: 838 TPRQALEWIYRLKSLV 853
>sp|Q83QE9|MUTS_SHIFL DNA mismatch repair protein MutS OS=Shigella flexneri GN=mutS PE=3
SV=1
Length = 853
Score = 31.6 bits (70), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Query: 26 QKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLK 85
++A Q L + +SP + Q DG +LL + + +SP + L +L+PD
Sbjct: 787 KRARQKLRELESISPN--AAATQVDGTQMSLLSVPEETSPAVEALE-------NLDPDSL 837
Query: 86 QSLASMETIYRLNWII 101
++E IYRL ++
Sbjct: 838 TPRQALEWIYRLKSLV 853
>sp|Q0T1G0|MUTS_SHIF8 DNA mismatch repair protein MutS OS=Shigella flexneri serotype 5b
(strain 8401) GN=mutS PE=3 SV=1
Length = 853
Score = 31.6 bits (70), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Query: 26 QKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLK 85
++A Q L + +SP + Q DG +LL + + +SP + L +L+PD
Sbjct: 787 KRARQKLRELESISPN--AAATQVDGTQMSLLSVPEETSPAVEALE-------NLDPDSL 837
Query: 86 QSLASMETIYRLNWII 101
++E IYRL ++
Sbjct: 838 TPRQALEWIYRLKSLV 853
>sp|B6I6B9|MUTS_ECOSE DNA mismatch repair protein MutS OS=Escherichia coli (strain SE11)
GN=mutS PE=3 SV=1
Length = 853
Score = 31.6 bits (70), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Query: 26 QKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLK 85
++A Q L + +SP + Q DG +LL + + +SP + L +L+PD
Sbjct: 787 KRARQKLRELESISPN--AAATQVDGTQMSLLSVPEETSPAVEALE-------NLDPDSL 837
Query: 86 QSLASMETIYRLNWII 101
++E IYRL ++
Sbjct: 838 TPRQALEWIYRLKSLV 853
>sp|B7LXE0|MUTS_ECO8A DNA mismatch repair protein MutS OS=Escherichia coli O8 (strain
IAI1) GN=mutS PE=3 SV=1
Length = 853
Score = 31.6 bits (70), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Query: 26 QKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLK 85
++A Q L + +SP + Q DG +LL + + +SP + L +L+PD
Sbjct: 787 KRARQKLRELESISPN--AAATQVDGTQMSLLSVPEETSPAVEALE-------NLDPDSL 837
Query: 86 QSLASMETIYRLNWII 101
++E IYRL ++
Sbjct: 838 TPRQALEWIYRLKSLV 853
>sp|B5Z397|MUTS_ECO5E DNA mismatch repair protein MutS OS=Escherichia coli O157:H7
(strain EC4115 / EHEC) GN=mutS PE=3 SV=1
Length = 853
Score = 31.6 bits (70), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Query: 26 QKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLK 85
++A Q L + +SP + Q DG +LL + + +SP + L +L+PD
Sbjct: 787 KRARQKLRELESISPN--AAATQVDGTQMSLLSVPEETSPAVEALE-------NLDPDSL 837
Query: 86 QSLASMETIYRLNWII 101
++E IYRL ++
Sbjct: 838 TPRQALEWIYRLKSLV 853
>sp|Q9S6P8|MUTS_ECO57 DNA mismatch repair protein MutS OS=Escherichia coli O157:H7
GN=mutS PE=3 SV=1
Length = 853
Score = 31.6 bits (70), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Query: 26 QKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLK 85
++A Q L + +SP + Q DG +LL + + +SP + L +L+PD
Sbjct: 787 KRARQKLRELESISPN--AAATQVDGTQMSLLSVPEETSPAVEALE-------NLDPDSL 837
Query: 86 QSLASMETIYRLNWII 101
++E IYRL ++
Sbjct: 838 TPRQALEWIYRLKSLV 853
>sp|Q31X95|MUTS_SHIBS DNA mismatch repair protein MutS OS=Shigella boydii serotype 4
(strain Sb227) GN=mutS PE=3 SV=1
Length = 853
Score = 31.6 bits (70), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Query: 26 QKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLK 85
++A Q L + +SP + Q DG +LL + + +SP + L +L+PD
Sbjct: 787 KRARQKLRELESISPN--AAATQVDGTQMSLLSVPEETSPAVEALE-------NLDPDSL 837
Query: 86 QSLASMETIYRLNWII 101
++E IYRL ++
Sbjct: 838 TPRQALEWIYRLKSLV 853
>sp|B2TZJ7|MUTS_SHIB3 DNA mismatch repair protein MutS OS=Shigella boydii serotype 18
(strain CDC 3083-94 / BS512) GN=mutS PE=3 SV=1
Length = 853
Score = 31.6 bits (70), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Query: 26 QKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLK 85
++A Q L + +SP + Q DG +LL + + +SP + L +L+PD
Sbjct: 787 KRARQKLRELESISPN--AAATQVDGTQMSLLSVPEETSPAVEALE-------NLDPDSL 837
Query: 86 QSLASMETIYRLNWII 101
++E IYRL ++
Sbjct: 838 TPRQALEWIYRLKSLV 853
>sp|B1LQ55|MUTS_ECOSM DNA mismatch repair protein MutS OS=Escherichia coli (strain
SMS-3-5 / SECEC) GN=mutS PE=3 SV=1
Length = 853
Score = 31.6 bits (70), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Query: 26 QKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLK 85
++A Q L + +SP + Q DG +LL + + +SP + L +L+PD
Sbjct: 787 KRARQKLRELESISPN--AAATQVDGTQMSLLSVPEETSPAVEALE-------NLDPDSL 837
Query: 86 QSLASMETIYRLNWII 101
++E IYRL ++
Sbjct: 838 TPRQALEWIYRLKSLV 853
>sp|P23909|MUTS_ECOLI DNA mismatch repair protein MutS OS=Escherichia coli (strain K12)
GN=mutS PE=1 SV=1
Length = 853
Score = 31.6 bits (70), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Query: 26 QKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLK 85
++A Q L + +SP + Q DG +LL + + +SP + L +L+PD
Sbjct: 787 KRARQKLRELESISPN--AAATQVDGTQMSLLSVPEETSPAVEALE-------NLDPDSL 837
Query: 86 QSLASMETIYRLNWII 101
++E IYRL ++
Sbjct: 838 TPRQALEWIYRLKSLV 853
>sp|B1IUU6|MUTS_ECOLC DNA mismatch repair protein MutS OS=Escherichia coli (strain ATCC
8739 / DSM 1576 / Crooks) GN=mutS PE=3 SV=1
Length = 853
Score = 31.6 bits (70), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Query: 26 QKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLK 85
++A Q L + +SP + Q DG +LL + + +SP + L +L+PD
Sbjct: 787 KRARQKLRELESISPN--AAATQVDGTQMSLLSVPEETSPAVEALE-------NLDPDSL 837
Query: 86 QSLASMETIYRLNWII 101
++E IYRL ++
Sbjct: 838 TPRQALEWIYRLKSLV 853
>sp|A8A3L2|MUTS_ECOHS DNA mismatch repair protein MutS OS=Escherichia coli O9:H4 (strain
HS) GN=mutS PE=3 SV=1
Length = 853
Score = 31.6 bits (70), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Query: 26 QKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLK 85
++A Q L + +SP + Q DG +LL + + +SP + L +L+PD
Sbjct: 787 KRARQKLRELESISPN--AAATQVDGTQMSLLSVPEETSPAVEALE-------NLDPDSL 837
Query: 86 QSLASMETIYRLNWII 101
++E IYRL ++
Sbjct: 838 TPRQALEWIYRLKSLV 853
>sp|B1XCR0|MUTS_ECODH DNA mismatch repair protein MutS OS=Escherichia coli (strain K12 /
DH10B) GN=mutS PE=3 SV=1
Length = 853
Score = 31.6 bits (70), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Query: 26 QKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLK 85
++A Q L + +SP + Q DG +LL + + +SP + L +L+PD
Sbjct: 787 KRARQKLRELESISPN--AAATQVDGTQMSLLSVPEETSPAVEALE-------NLDPDSL 837
Query: 86 QSLASMETIYRLNWII 101
++E IYRL ++
Sbjct: 838 TPRQALEWIYRLKSLV 853
>sp|C4ZZN7|MUTS_ECOBW DNA mismatch repair protein MutS OS=Escherichia coli (strain K12 /
MC4100 / BW2952) GN=mutS PE=3 SV=1
Length = 853
Score = 31.6 bits (70), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Query: 26 QKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLK 85
++A Q L + +SP + Q DG +LL + + +SP + L +L+PD
Sbjct: 787 KRARQKLRELESISPN--AAATQVDGTQMSLLSVPEETSPAVEALE-------NLDPDSL 837
Query: 86 QSLASMETIYRLNWII 101
++E IYRL ++
Sbjct: 838 TPRQALEWIYRLKSLV 853
>sp|Q1R7W4|MUTS_ECOUT DNA mismatch repair protein MutS OS=Escherichia coli (strain UTI89
/ UPEC) GN=mutS PE=3 SV=1
Length = 853
Score = 31.6 bits (70), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Query: 26 QKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLK 85
++A Q L + +SP + Q DG +LL + + +SP + L +L+PD
Sbjct: 787 KRARQKLRELESISPN--AAATQVDGTQMSLLSVPEETSPAVEALE-------NLDPDSL 837
Query: 86 QSLASMETIYRLNWII 101
++E IYRL ++
Sbjct: 838 TPRQALEWIYRLKSLV 853
>sp|A1AES5|MUTS_ECOK1 DNA mismatch repair protein MutS OS=Escherichia coli O1:K1 / APEC
GN=mutS PE=3 SV=1
Length = 853
Score = 31.6 bits (70), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Query: 26 QKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLK 85
++A Q L + +SP + Q DG +LL + + +SP + L +L+PD
Sbjct: 787 KRARQKLRELESISPN--AAATQVDGTQMSLLSVPEETSPAVEALE-------NLDPDSL 837
Query: 86 QSLASMETIYRLNWII 101
++E IYRL ++
Sbjct: 838 TPRQALEWIYRLKSLV 853
>sp|B7MKK5|MUTS_ECO45 DNA mismatch repair protein MutS OS=Escherichia coli O45:K1 (strain
S88 / ExPEC) GN=mutS PE=3 SV=1
Length = 853
Score = 31.6 bits (70), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Query: 26 QKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLK 85
++A Q L + +SP + Q DG +LL + + +SP + L +L+PD
Sbjct: 787 KRARQKLRELESISPN--AAATQVDGTQMSLLSVPEETSPAVEALE-------NLDPDSL 837
Query: 86 QSLASMETIYRLNWII 101
++E IYRL ++
Sbjct: 838 TPRQALEWIYRLKSLV 853
>sp|B7UHE9|MUTS_ECO27 DNA mismatch repair protein MutS OS=Escherichia coli O127:H6
(strain E2348/69 / EPEC) GN=mutS PE=3 SV=1
Length = 853
Score = 31.6 bits (70), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Query: 26 QKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLK 85
++A Q L + +SP + Q DG +LL + + +SP + L +L+PD
Sbjct: 787 KRARQKLRELESISPN--AAATQVDGTQMSLLSVPEETSPAVEALE-------NLDPDSL 837
Query: 86 QSLASMETIYRLNWII 101
++E IYRL ++
Sbjct: 838 TPRQALEWIYRLKSLV 853
>sp|B7NT79|MUTS_ECO7I DNA mismatch repair protein MutS OS=Escherichia coli O7:K1 (strain
IAI39 / ExPEC) GN=mutS PE=3 SV=1
Length = 853
Score = 31.2 bits (69), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Query: 26 QKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLK 85
++A Q L + +SP + Q DG +LL + + +SP + L +L+PD
Sbjct: 787 KRARQKLRELESISPN--AAATQVDGTQMSLLSVQEETSPAVEALE-------NLDPDSL 837
Query: 86 QSLASMETIYRLNWII 101
++E IYRL ++
Sbjct: 838 TPRQALEWIYRLKSLV 853
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.126 0.331
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,574,510
Number of Sequences: 539616
Number of extensions: 2185710
Number of successful extensions: 9193
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 82
Number of HSP's that attempted gapping in prelim test: 9045
Number of HSP's gapped (non-prelim): 170
length of query: 236
length of database: 191,569,459
effective HSP length: 114
effective length of query: 122
effective length of database: 130,053,235
effective search space: 15866494670
effective search space used: 15866494670
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)