Query 044293
Match_columns 236
No_of_seqs 122 out of 1135
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 13:14:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044293.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044293hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 100.0 4.7E-28 1E-32 234.4 23.5 226 7-236 445-753 (2102)
2 PLN03200 cellulose synthase-in 100.0 2.5E-26 5.3E-31 222.6 24.4 227 3-232 8-245 (2102)
3 KOG4224 Armadillo repeat prote 99.9 1.6E-25 3.4E-30 183.0 16.8 222 7-232 166-390 (550)
4 KOG0166 Karyopherin (importin) 99.9 5.1E-25 1.1E-29 189.6 17.4 220 7-229 108-332 (514)
5 KOG4224 Armadillo repeat prote 99.9 4.8E-26 1E-30 186.0 10.4 219 7-230 84-304 (550)
6 KOG0166 Karyopherin (importin) 99.9 1.7E-22 3.6E-27 174.1 17.7 222 8-232 152-378 (514)
7 COG5064 SRP1 Karyopherin (impo 99.9 5.7E-23 1.2E-27 166.9 11.1 227 7-236 113-346 (526)
8 PF05804 KAP: Kinesin-associat 99.9 5.2E-21 1.1E-25 172.6 21.5 217 7-230 249-466 (708)
9 PF05804 KAP: Kinesin-associat 99.9 3.5E-20 7.7E-25 167.3 21.0 220 7-231 289-546 (708)
10 COG5064 SRP1 Karyopherin (impo 99.8 6.8E-20 1.5E-24 149.1 13.4 216 8-229 157-380 (526)
11 PF04826 Arm_2: Armadillo-like 99.8 6.3E-17 1.4E-21 130.8 19.6 194 7-206 11-206 (254)
12 KOG1048 Neural adherens juncti 99.7 2.4E-17 5.2E-22 146.6 13.4 198 7-206 232-453 (717)
13 KOG4199 Uncharacterized conser 99.7 8.5E-16 1.8E-20 125.1 20.1 221 9-231 146-385 (461)
14 KOG4199 Uncharacterized conser 99.7 3.2E-15 7E-20 121.7 19.3 216 10-228 191-425 (461)
15 PF04826 Arm_2: Armadillo-like 99.7 1.3E-15 2.8E-20 123.2 17.0 177 47-231 9-188 (254)
16 cd00020 ARM Armadillo/beta-cat 99.6 4.7E-14 1E-18 101.3 12.3 117 45-163 2-120 (120)
17 KOG1048 Neural adherens juncti 99.6 3.5E-14 7.6E-19 126.7 12.2 175 52-228 234-427 (717)
18 cd00020 ARM Armadillo/beta-cat 99.5 2.5E-13 5.4E-18 97.5 13.2 114 7-122 6-120 (120)
19 PF10508 Proteasom_PSMB: Prote 99.5 3E-12 6.4E-17 114.0 21.5 199 6-206 75-279 (503)
20 KOG2122 Beta-catenin-binding p 99.5 1.8E-13 3.9E-18 127.9 12.9 208 22-231 365-585 (2195)
21 PF10508 Proteasom_PSMB: Prote 99.5 5.7E-12 1.2E-16 112.2 21.6 210 13-229 43-254 (503)
22 PF03224 V-ATPase_H_N: V-ATPas 99.4 3.2E-12 6.9E-17 107.4 14.6 221 8-230 55-294 (312)
23 KOG1222 Kinesin associated pro 99.4 7.9E-12 1.7E-16 106.5 15.1 218 8-230 304-559 (791)
24 KOG4500 Rho/Rac GTPase guanine 99.4 3.2E-11 6.9E-16 101.5 16.6 224 8-233 87-417 (604)
25 KOG2122 Beta-catenin-binding p 99.4 6.9E-12 1.5E-16 117.6 12.1 199 7-207 393-603 (2195)
26 KOG1222 Kinesin associated pro 99.4 3.3E-11 7.2E-16 102.8 14.9 215 4-225 256-474 (791)
27 cd00256 VATPase_H VATPase_H, r 99.2 2.1E-09 4.6E-14 92.7 20.5 222 7-230 52-288 (429)
28 KOG4646 Uncharacterized conser 99.2 1.7E-10 3.7E-15 82.7 11.0 132 6-140 14-147 (173)
29 KOG0946 ER-Golgi vesicle-tethe 99.2 2.5E-09 5.3E-14 95.9 17.8 216 6-228 20-264 (970)
30 KOG2160 Armadillo/beta-catenin 99.2 4E-09 8.6E-14 87.4 17.6 184 19-205 94-282 (342)
31 PF03224 V-ATPase_H_N: V-ATPas 99.1 1.8E-09 3.9E-14 90.8 14.6 185 9-195 106-304 (312)
32 KOG4500 Rho/Rac GTPase guanine 99.1 3.3E-09 7.2E-14 89.6 14.4 215 9-231 224-454 (604)
33 PRK09687 putative lyase; Provi 99.0 2E-08 4.3E-13 83.0 16.0 29 133-161 158-186 (280)
34 KOG0168 Putative ubiquitin fus 99.0 1.5E-08 3.3E-13 91.6 16.1 213 9-228 168-390 (1051)
35 KOG0168 Putative ubiquitin fus 99.0 2.1E-08 4.7E-13 90.6 16.8 218 6-231 209-439 (1051)
36 PRK09687 putative lyase; Provi 98.9 8.2E-08 1.8E-12 79.3 16.3 165 7-203 22-186 (280)
37 KOG4646 Uncharacterized conser 98.9 1.4E-08 3.1E-13 73.0 9.4 122 51-173 16-139 (173)
38 cd00256 VATPase_H VATPase_H, r 98.9 2.7E-07 5.8E-12 79.9 18.9 220 9-232 144-410 (429)
39 PF05536 Neurochondrin: Neuroc 98.8 6.1E-07 1.3E-11 80.6 17.5 157 6-164 3-169 (543)
40 KOG2160 Armadillo/beta-catenin 98.7 7.8E-07 1.7E-11 74.0 15.1 155 8-163 124-282 (342)
41 KOG2973 Uncharacterized conser 98.7 1E-06 2.2E-11 71.8 15.1 209 10-227 5-224 (353)
42 KOG1293 Proteins containing ar 98.7 1.1E-06 2.5E-11 77.8 16.2 163 42-207 369-535 (678)
43 KOG2171 Karyopherin (importin) 98.6 2.9E-06 6.3E-11 79.5 18.1 205 7-215 347-558 (1075)
44 KOG2759 Vacuolar H+-ATPase V1 98.6 9E-06 2E-10 68.9 17.6 219 8-229 65-300 (442)
45 PRK13800 putative oxidoreducta 98.6 1.3E-05 2.8E-10 76.6 20.9 181 7-210 651-872 (897)
46 KOG1293 Proteins containing ar 98.6 3.2E-06 6.9E-11 75.1 14.9 152 19-172 388-543 (678)
47 PRK13800 putative oxidoreducta 98.6 5.6E-06 1.2E-10 79.1 17.7 166 8-204 621-803 (897)
48 PF01602 Adaptin_N: Adaptin N 98.5 1.7E-06 3.7E-11 77.7 13.1 186 3-204 109-295 (526)
49 PF00514 Arm: Armadillo/beta-c 98.5 2.2E-07 4.7E-12 53.7 4.7 40 39-79 1-40 (41)
50 PF00514 Arm: Armadillo/beta-c 98.5 1.5E-07 3.2E-12 54.4 3.9 41 81-122 1-41 (41)
51 KOG3678 SARM protein (with ste 98.5 1.7E-06 3.7E-11 74.3 11.5 164 7-175 179-348 (832)
52 KOG2973 Uncharacterized conser 98.4 2.6E-05 5.7E-10 63.7 15.9 218 7-231 43-297 (353)
53 PF05536 Neurochondrin: Neuroc 98.4 1.3E-05 2.8E-10 72.1 15.3 154 52-207 6-170 (543)
54 PF01602 Adaptin_N: Adaptin N 98.4 2.4E-05 5.1E-10 70.4 16.7 187 4-207 147-335 (526)
55 KOG2759 Vacuolar H+-ATPase V1 98.3 4.2E-05 9.1E-10 65.0 15.8 218 12-233 160-424 (442)
56 KOG2734 Uncharacterized conser 98.3 0.00012 2.6E-09 62.7 17.6 216 8-227 125-370 (536)
57 KOG0946 ER-Golgi vesicle-tethe 98.3 0.00015 3.2E-09 66.1 18.8 210 7-216 121-358 (970)
58 PF13646 HEAT_2: HEAT repeats; 98.3 6.1E-06 1.3E-10 55.7 8.0 87 10-118 1-88 (88)
59 KOG3678 SARM protein (with ste 98.3 1.4E-05 3.1E-10 68.8 11.8 172 43-218 173-349 (832)
60 PF13646 HEAT_2: HEAT repeats; 98.3 7.2E-06 1.6E-10 55.3 8.2 88 94-201 1-88 (88)
61 KOG1789 Endocytosis protein RM 98.2 0.00018 4E-09 67.5 18.9 221 5-231 1768-2143(2235)
62 PF14664 RICTOR_N: Rapamycin-i 98.2 0.00011 2.4E-09 63.1 16.5 218 7-231 24-253 (371)
63 KOG2023 Nuclear transport rece 98.2 4.6E-05 1E-09 68.1 14.1 177 7-187 127-311 (885)
64 PF14664 RICTOR_N: Rapamycin-i 98.2 0.00016 3.4E-09 62.2 17.0 192 31-228 6-198 (371)
65 KOG0212 Uncharacterized conser 98.2 5.6E-05 1.2E-09 66.4 14.1 202 7-210 207-411 (675)
66 PF12348 CLASP_N: CLASP N term 98.2 2.1E-05 4.6E-10 63.0 10.7 182 18-206 17-207 (228)
67 KOG2734 Uncharacterized conser 98.2 0.00043 9.3E-09 59.4 18.2 199 27-229 103-329 (536)
68 PTZ00429 beta-adaptin; Provisi 98.2 0.00054 1.2E-08 63.8 20.4 124 53-186 107-230 (746)
69 PTZ00429 beta-adaptin; Provisi 98.2 0.00025 5.4E-09 66.0 18.0 179 7-206 31-209 (746)
70 smart00185 ARM Armadillo/beta- 98.0 2.2E-05 4.7E-10 44.9 5.1 40 40-80 2-41 (41)
71 KOG2171 Karyopherin (importin) 98.0 0.00066 1.4E-08 64.2 16.9 222 8-235 247-492 (1075)
72 smart00185 ARM Armadillo/beta- 98.0 2.1E-05 4.5E-10 45.0 4.7 40 82-122 2-41 (41)
73 COG5369 Uncharacterized conser 97.9 9E-05 1.9E-09 64.9 10.3 198 27-227 408-617 (743)
74 PF11841 DUF3361: Domain of un 97.7 0.0013 2.9E-08 49.2 12.4 128 86-214 5-142 (160)
75 COG5369 Uncharacterized conser 97.7 0.00023 5.1E-09 62.4 9.4 173 8-182 431-615 (743)
76 KOG3036 Protein involved in ce 97.7 0.012 2.5E-07 47.2 17.4 149 68-216 96-258 (293)
77 PF12348 CLASP_N: CLASP N term 97.6 0.0011 2.4E-08 53.0 11.3 147 12-165 57-208 (228)
78 KOG0212 Uncharacterized conser 97.6 0.0012 2.5E-08 58.4 11.7 160 5-167 247-410 (675)
79 PF04078 Rcd1: Cell differenti 97.6 0.0016 3.5E-08 52.5 11.2 195 21-215 8-228 (262)
80 KOG2023 Nuclear transport rece 97.5 0.0012 2.6E-08 59.5 11.1 173 50-225 127-306 (885)
81 PF04063 DUF383: Domain of unk 97.5 0.00094 2E-08 52.0 9.3 126 62-187 6-159 (192)
82 PF13513 HEAT_EZ: HEAT-like re 97.5 0.00034 7.4E-09 42.8 5.5 55 65-120 1-55 (55)
83 PF04078 Rcd1: Cell differenti 97.5 0.0023 5.1E-08 51.6 11.4 148 23-173 65-228 (262)
84 PF10165 Ric8: Guanine nucleot 97.5 0.0015 3.3E-08 57.6 11.3 175 28-204 1-217 (446)
85 PF13513 HEAT_EZ: HEAT-like re 97.5 0.00049 1.1E-08 42.1 5.9 55 22-78 1-55 (55)
86 TIGR02270 conserved hypothetic 97.5 0.011 2.3E-07 51.7 16.2 24 53-76 88-111 (410)
87 COG5096 Vesicle coat complex, 97.5 0.0076 1.7E-07 55.8 15.8 146 4-164 51-196 (757)
88 KOG1789 Endocytosis protein RM 97.4 0.0042 9.1E-08 58.9 13.6 140 23-164 1740-1884(2235)
89 PF10165 Ric8: Guanine nucleot 97.4 0.012 2.6E-07 52.1 16.0 208 7-215 21-290 (446)
90 KOG3036 Protein involved in ce 97.4 0.0043 9.4E-08 49.5 11.7 149 22-173 93-257 (293)
91 PF08569 Mo25: Mo25-like; Int 97.4 0.0083 1.8E-07 50.9 14.3 217 7-229 75-308 (335)
92 PF09759 Atx10homo_assoc: Spin 97.4 0.0011 2.4E-08 46.0 7.4 66 25-91 3-71 (102)
93 KOG1517 Guanine nucleotide bin 97.4 0.0054 1.2E-07 57.9 14.0 194 8-206 472-672 (1387)
94 TIGR02270 conserved hypothetic 97.4 0.0054 1.2E-07 53.5 12.8 90 51-162 117-206 (410)
95 KOG4413 26S proteasome regulat 97.3 0.0058 1.3E-07 51.0 11.9 176 52-229 83-266 (524)
96 KOG1242 Protein containing ada 97.3 0.019 4.1E-07 51.3 15.8 205 9-231 135-346 (569)
97 PF14668 RICTOR_V: Rapamycin-i 97.3 0.0015 3.2E-08 42.4 6.7 69 150-218 3-71 (73)
98 PF11841 DUF3361: Domain of un 97.3 0.0084 1.8E-07 45.0 11.5 120 43-163 4-131 (160)
99 PF05004 IFRD: Interferon-rela 97.2 0.096 2.1E-06 44.1 18.2 197 4-203 39-255 (309)
100 COG1413 FOG: HEAT repeat [Ener 97.1 0.04 8.7E-07 46.7 15.8 164 8-202 43-239 (335)
101 PF09759 Atx10homo_assoc: Spin 97.1 0.0032 7E-08 43.7 7.3 67 151-217 3-72 (102)
102 PF08045 CDC14: Cell division 97.1 0.01 2.2E-07 48.2 10.9 98 24-122 107-207 (257)
103 KOG1242 Protein containing ada 97.1 0.016 3.5E-07 51.8 12.8 178 4-186 250-464 (569)
104 KOG1059 Vesicle coat complex A 97.0 0.013 2.8E-07 53.4 12.0 186 3-205 176-365 (877)
105 KOG4413 26S proteasome regulat 97.0 0.14 3.1E-06 43.0 16.9 213 8-225 128-351 (524)
106 PF04063 DUF383: Domain of unk 97.0 0.0091 2E-07 46.5 9.3 121 23-144 10-157 (192)
107 PF07814 WAPL: Wings apart-lik 96.9 0.11 2.5E-06 44.6 16.9 210 5-216 18-311 (361)
108 PF11701 UNC45-central: Myosin 96.9 0.006 1.3E-07 46.0 7.8 115 5-120 39-157 (157)
109 COG5231 VMA13 Vacuolar H+-ATPa 96.8 0.035 7.5E-07 46.2 12.1 181 21-203 162-426 (432)
110 KOG1061 Vesicle coat complex A 96.8 0.034 7.4E-07 51.0 13.1 147 5-166 46-192 (734)
111 PF11698 V-ATPase_H_C: V-ATPas 96.8 0.0056 1.2E-07 43.6 6.3 71 7-78 42-113 (119)
112 PF12717 Cnd1: non-SMC mitotic 96.7 0.13 2.7E-06 39.6 14.0 112 21-145 1-112 (178)
113 KOG1517 Guanine nucleotide bin 96.7 0.16 3.4E-06 48.6 16.5 196 8-206 512-733 (1387)
114 COG5096 Vesicle coat complex, 96.6 0.21 4.6E-06 46.6 16.9 168 17-206 28-196 (757)
115 PF12460 MMS19_C: RNAPII trans 96.6 0.2 4.3E-06 44.0 16.3 194 5-207 186-396 (415)
116 KOG1241 Karyopherin (importin) 96.6 0.12 2.5E-06 47.7 14.6 185 14-204 265-476 (859)
117 KOG2611 Neurochondrin/leucine- 96.6 0.028 6.1E-07 49.2 10.2 135 7-144 10-162 (698)
118 PF08045 CDC14: Cell division 96.6 0.02 4.3E-07 46.5 8.9 83 149-232 106-190 (257)
119 KOG1967 DNA repair/transcripti 96.5 0.031 6.8E-07 52.3 10.9 155 42-201 860-1020(1030)
120 PF12719 Cnd3: Nuclear condens 96.5 0.17 3.6E-06 42.3 14.6 170 7-186 25-208 (298)
121 PF12717 Cnd1: non-SMC mitotic 96.5 0.15 3.2E-06 39.2 13.1 111 64-186 1-112 (178)
122 PF06025 DUF913: Domain of Unk 96.5 0.33 7.1E-06 42.1 16.3 199 27-228 3-254 (379)
123 PF11701 UNC45-central: Myosin 96.5 0.03 6.6E-07 42.2 8.9 143 10-159 5-155 (157)
124 PF08569 Mo25: Mo25-like; Int 96.4 0.28 6.1E-06 41.7 15.4 185 42-231 68-267 (335)
125 PF13764 E3_UbLigase_R4: E3 ub 96.4 0.45 9.8E-06 45.0 18.0 82 127-208 312-409 (802)
126 KOG0301 Phospholipase A2-activ 96.4 0.28 6E-06 44.7 15.6 172 20-199 556-740 (745)
127 KOG0213 Splicing factor 3b, su 96.4 0.05 1.1E-06 50.1 11.0 155 5-163 796-954 (1172)
128 PF13764 E3_UbLigase_R4: E3 ub 96.4 0.14 3.1E-06 48.2 14.4 186 44-232 111-333 (802)
129 PF06371 Drf_GBD: Diaphanous G 96.4 0.066 1.4E-06 41.3 10.6 111 7-121 65-186 (187)
130 PF12755 Vac14_Fab1_bd: Vacuol 96.3 0.028 6.1E-07 38.7 7.2 70 133-204 26-95 (97)
131 KOG1062 Vesicle coat complex A 96.2 0.29 6.3E-06 45.5 14.8 114 2-123 136-264 (866)
132 PF12755 Vac14_Fab1_bd: Vacuol 96.2 0.062 1.3E-06 37.0 8.3 92 25-120 3-94 (97)
133 PF11707 Npa1: Ribosome 60S bi 96.1 0.74 1.6E-05 39.1 18.2 159 7-166 55-240 (330)
134 PF06025 DUF913: Domain of Unk 96.1 0.17 3.7E-06 43.8 12.6 83 21-104 122-208 (379)
135 COG5181 HSH155 U2 snRNP splice 96.1 0.092 2E-06 47.5 10.9 156 4-163 600-759 (975)
136 KOG2274 Predicted importin 9 [ 96.0 0.58 1.3E-05 44.2 16.1 204 10-218 492-703 (1005)
137 KOG1061 Vesicle coat complex A 96.0 0.058 1.2E-06 49.6 9.5 172 7-187 120-292 (734)
138 PF11698 V-ATPase_H_C: V-ATPas 96.0 0.026 5.7E-07 40.2 5.9 79 125-204 32-114 (119)
139 KOG1241 Karyopherin (importin) 96.0 0.12 2.6E-06 47.6 11.4 150 5-163 316-477 (859)
140 KOG2999 Regulator of Rac1, req 95.9 0.54 1.2E-05 42.1 14.6 154 8-163 83-242 (713)
141 KOG1059 Vesicle coat complex A 95.8 0.93 2E-05 41.9 16.0 126 6-146 142-268 (877)
142 COG1413 FOG: HEAT repeat [Ener 95.8 0.64 1.4E-05 39.3 14.8 136 6-162 72-241 (335)
143 KOG0213 Splicing factor 3b, su 95.7 0.13 2.8E-06 47.6 10.5 131 93-231 800-938 (1172)
144 PF05918 API5: Apoptosis inhib 95.7 0.97 2.1E-05 41.0 15.9 122 20-160 34-159 (556)
145 PF12719 Cnd3: Nuclear condens 95.7 0.67 1.5E-05 38.7 14.4 170 51-230 26-209 (298)
146 KOG2999 Regulator of Rac1, req 95.7 0.67 1.4E-05 41.6 14.4 161 54-215 86-254 (713)
147 KOG1077 Vesicle coat complex A 95.6 0.42 9E-06 44.0 13.1 166 53-228 331-512 (938)
148 PF02985 HEAT: HEAT repeat; I 95.6 0.034 7.3E-07 29.5 4.1 29 9-37 1-29 (31)
149 PF12460 MMS19_C: RNAPII trans 95.6 0.23 4.9E-06 43.6 11.5 114 6-124 269-396 (415)
150 PF02985 HEAT: HEAT repeat; I 95.6 0.024 5.2E-07 30.1 3.4 30 135-164 1-30 (31)
151 PF14668 RICTOR_V: Rapamycin-i 95.5 0.053 1.2E-06 35.2 5.5 67 68-134 4-70 (73)
152 KOG1824 TATA-binding protein-i 95.5 0.35 7.6E-06 45.9 12.7 212 7-236 816-1062(1233)
153 KOG1062 Vesicle coat complex A 95.5 1.1 2.3E-05 42.0 15.4 153 3-163 345-544 (866)
154 KOG2933 Uncharacterized conser 95.4 0.2 4.4E-06 41.6 9.7 145 7-163 87-234 (334)
155 KOG1060 Vesicle coat complex A 95.3 0.74 1.6E-05 43.0 13.7 170 11-204 38-208 (968)
156 PF06371 Drf_GBD: Diaphanous G 95.2 0.12 2.6E-06 39.8 7.7 78 85-162 100-186 (187)
157 COG5209 RCD1 Uncharacterized p 95.1 0.074 1.6E-06 42.2 6.0 147 23-172 115-277 (315)
158 KOG4151 Myosin assembly protei 95.0 0.19 4.1E-06 46.5 9.3 155 5-161 538-697 (748)
159 COG5209 RCD1 Uncharacterized p 94.9 0.24 5.1E-06 39.4 8.4 146 69-214 118-277 (315)
160 KOG1248 Uncharacterized conser 94.9 1.7 3.7E-05 42.3 15.4 178 18-204 707-897 (1176)
161 KOG1060 Vesicle coat complex A 94.8 0.77 1.7E-05 42.8 12.5 174 4-205 283-458 (968)
162 COG5240 SEC21 Vesicle coat com 94.8 0.9 2E-05 41.1 12.4 77 7-87 263-339 (898)
163 KOG2259 Uncharacterized conser 94.6 0.35 7.5E-06 44.2 9.6 197 9-214 235-503 (823)
164 KOG2611 Neurochondrin/leucine- 94.6 1.4 2.9E-05 39.1 12.8 131 56-186 16-163 (698)
165 PF05004 IFRD: Interferon-rela 94.5 1.8 4E-05 36.4 13.4 149 9-161 87-255 (309)
166 KOG3665 ZYG-1-like serine/thre 94.5 1.3 2.8E-05 41.6 13.6 151 74-225 494-674 (699)
167 PF08324 PUL: PUL domain; Int 94.4 0.4 8.6E-06 39.3 9.1 173 52-225 64-250 (268)
168 PF05918 API5: Apoptosis inhib 94.4 1.8 3.9E-05 39.3 13.7 142 7-163 58-207 (556)
169 KOG1824 TATA-binding protein-i 94.2 1.4 3.1E-05 42.0 13.0 178 4-187 564-746 (1233)
170 KOG1077 Vesicle coat complex A 94.2 2.6 5.6E-05 39.1 14.1 106 4-120 325-431 (938)
171 KOG0414 Chromosome condensatio 94.1 2.5 5.4E-05 41.3 14.6 141 8-163 919-1064(1251)
172 cd03568 VHS_STAM VHS domain fa 94.1 0.52 1.1E-05 35.0 8.4 75 4-79 33-109 (144)
173 cd03567 VHS_GGA VHS domain fam 94.0 0.6 1.3E-05 34.4 8.4 73 5-78 35-114 (139)
174 KOG2025 Chromosome condensatio 93.9 5.3 0.00012 37.2 15.7 116 6-130 83-198 (892)
175 KOG1240 Protein kinase contain 93.9 1.4 3.1E-05 43.0 12.6 199 6-212 460-692 (1431)
176 KOG4535 HEAT and armadillo rep 93.8 0.12 2.6E-06 45.4 5.1 161 68-231 408-586 (728)
177 cd03569 VHS_Hrs_Vps27p VHS dom 93.8 0.62 1.4E-05 34.5 8.3 74 5-79 38-113 (142)
178 PF10363 DUF2435: Protein of u 93.8 0.22 4.8E-06 33.9 5.4 71 8-81 3-73 (92)
179 KOG2259 Uncharacterized conser 93.8 0.42 9.1E-06 43.7 8.4 101 13-125 378-478 (823)
180 PF12031 DUF3518: Domain of un 93.8 0.26 5.6E-06 39.5 6.4 122 107-229 80-227 (257)
181 PF08324 PUL: PUL domain; Int 93.7 1.4 3E-05 36.1 11.2 158 25-183 80-252 (268)
182 KOG2005 26S proteasome regulat 93.7 1.8 3.8E-05 39.9 12.2 199 1-202 39-293 (878)
183 cd03572 ENTH_epsin_related ENT 93.5 0.72 1.6E-05 33.2 7.9 76 3-78 33-117 (122)
184 KOG1967 DNA repair/transcripti 93.5 0.56 1.2E-05 44.4 9.0 152 4-157 863-1018(1030)
185 KOG4653 Uncharacterized conser 93.5 1 2.2E-05 42.5 10.6 70 9-80 728-797 (982)
186 COG5181 HSH155 U2 snRNP splice 93.4 0.84 1.8E-05 41.6 9.7 182 5-206 685-871 (975)
187 KOG1248 Uncharacterized conser 93.2 3.4 7.5E-05 40.3 13.8 205 18-229 664-880 (1176)
188 KOG2025 Chromosome condensatio 93.2 2.3 5.1E-05 39.4 12.2 103 51-158 85-188 (892)
189 COG5215 KAP95 Karyopherin (imp 92.8 4.5 9.7E-05 36.8 13.1 139 65-204 570-710 (858)
190 cd03561 VHS VHS domain family; 92.8 1.3 2.7E-05 32.4 8.5 75 5-80 34-112 (133)
191 KOG2137 Protein kinase [Signal 92.7 2.5 5.4E-05 39.1 11.8 156 43-205 383-539 (700)
192 COG5218 YCG1 Chromosome conden 92.6 6 0.00013 36.2 13.6 133 22-165 64-198 (885)
193 PF14726 RTTN_N: Rotatin, an a 92.6 1 2.2E-05 31.0 7.3 94 23-117 2-95 (98)
194 PF12031 DUF3518: Domain of un 92.6 0.4 8.7E-06 38.5 5.9 80 67-146 140-228 (257)
195 KOG1566 Conserved protein Mo25 92.4 5.9 0.00013 33.2 16.8 216 8-229 79-311 (342)
196 KOG2956 CLIP-associating prote 92.3 7.7 0.00017 34.4 17.2 185 9-204 287-476 (516)
197 KOG4151 Myosin assembly protei 92.1 4.6 9.9E-05 37.8 12.8 146 70-217 561-712 (748)
198 KOG3665 ZYG-1-like serine/thre 91.9 11 0.00024 35.5 15.5 169 31-200 494-692 (699)
199 PF07814 WAPL: Wings apart-lik 91.7 3.4 7.3E-05 35.6 11.2 93 52-144 22-116 (361)
200 KOG2032 Uncharacterized conser 91.7 3.8 8.3E-05 36.4 11.3 150 9-164 259-416 (533)
201 PF14225 MOR2-PAG1_C: Cell mor 91.7 6.5 0.00014 32.3 15.7 197 14-229 13-239 (262)
202 smart00288 VHS Domain present 91.6 2 4.3E-05 31.3 8.4 72 6-78 35-109 (133)
203 KOG1991 Nuclear transport rece 91.6 12 0.00026 36.2 14.9 140 4-147 406-560 (1010)
204 PF11865 DUF3385: Domain of un 91.1 4.4 9.6E-05 30.5 10.0 148 4-161 6-155 (160)
205 COG5231 VMA13 Vacuolar H+-ATPa 91.0 0.45 9.7E-06 39.9 4.7 74 4-78 352-426 (432)
206 KOG1943 Beta-tubulin folding c 90.9 11 0.00024 36.7 14.2 211 4-228 337-592 (1133)
207 COG5240 SEC21 Vesicle coat com 90.7 11 0.00025 34.4 13.3 39 2-40 297-335 (898)
208 PF08167 RIX1: rRNA processing 90.6 2.7 5.8E-05 31.9 8.5 113 4-121 21-142 (165)
209 KOG1820 Microtubule-associated 90.4 13 0.00028 35.7 14.2 179 13-204 258-442 (815)
210 PF08167 RIX1: rRNA processing 90.1 2.4 5.1E-05 32.2 7.9 110 51-163 25-143 (165)
211 KOG0915 Uncharacterized conser 90.0 14 0.00031 37.4 14.4 196 9-208 957-1163(1702)
212 KOG0414 Chromosome condensatio 89.9 3.7 7.9E-05 40.2 10.3 142 52-206 920-1065(1251)
213 COG5215 KAP95 Karyopherin (imp 89.9 11 0.00025 34.4 12.7 184 18-206 231-438 (858)
214 PF00790 VHS: VHS domain; Int 89.3 2.2 4.7E-05 31.4 6.9 73 4-77 38-115 (140)
215 KOG2274 Predicted importin 9 [ 89.3 7.2 0.00016 37.3 11.4 128 96-229 494-624 (1005)
216 KOG2032 Uncharacterized conser 88.7 17 0.00037 32.5 12.8 146 62-212 269-422 (533)
217 KOG2137 Protein kinase [Signal 88.7 7.1 0.00015 36.3 10.9 137 3-147 383-521 (700)
218 KOG1020 Sister chromatid cohes 88.7 17 0.00037 36.9 13.9 140 50-204 815-959 (1692)
219 PF12530 DUF3730: Protein of u 88.2 12 0.00026 30.1 15.9 139 10-163 2-151 (234)
220 PF04499 SAPS: SIT4 phosphatas 88.1 10 0.00022 34.0 11.5 119 40-163 10-148 (475)
221 cd00197 VHS_ENTH_ANTH VHS, ENT 88.0 6.8 0.00015 27.5 8.6 73 4-77 33-112 (115)
222 KOG1058 Vesicle coat complex C 87.5 23 0.00049 33.5 13.2 67 5-77 131-198 (948)
223 KOG1058 Vesicle coat complex C 87.2 27 0.00058 33.1 13.4 76 96-187 321-408 (948)
224 KOG1243 Protein kinase [Genera 87.2 2.9 6.3E-05 38.6 7.5 183 7-201 329-511 (690)
225 PF10363 DUF2435: Protein of u 87.0 4 8.7E-05 27.7 6.5 69 135-205 4-72 (92)
226 KOG1788 Uncharacterized conser 87.0 19 0.0004 35.7 12.6 111 28-144 662-784 (2799)
227 PF11865 DUF3385: Domain of un 86.6 2.8 6E-05 31.7 6.2 133 91-232 9-142 (160)
228 PF14225 MOR2-PAG1_C: Cell mor 86.4 17 0.00037 29.9 13.1 136 51-204 111-253 (262)
229 KOG1832 HIV-1 Vpr-binding prot 86.0 16 0.00035 35.2 11.6 121 19-144 364-490 (1516)
230 COG5098 Chromosome condensatio 86.0 11 0.00023 35.4 10.3 128 20-163 908-1037(1128)
231 KOG0915 Uncharacterized conser 85.3 48 0.001 34.0 16.8 177 4-187 990-1184(1702)
232 KOG4535 HEAT and armadillo rep 84.7 2.6 5.6E-05 37.5 5.7 155 51-205 433-603 (728)
233 PF08216 CTNNBL: Catenin-beta- 84.4 2 4.4E-05 30.1 4.0 39 27-67 65-103 (108)
234 KOG2062 26S proteasome regulat 84.2 21 0.00046 33.6 11.4 34 95-128 591-624 (929)
235 KOG0301 Phospholipase A2-activ 83.9 28 0.00061 32.3 11.9 157 64-229 557-727 (745)
236 KOG1820 Microtubule-associated 83.8 18 0.00038 34.8 11.2 136 19-163 306-443 (815)
237 cd03569 VHS_Hrs_Vps27p VHS dom 83.0 4.9 0.00011 29.7 5.9 73 51-123 41-115 (142)
238 KOG0211 Protein phosphatase 2A 82.8 26 0.00057 33.4 11.8 188 7-203 436-623 (759)
239 PF11707 Npa1: Ribosome 60S bi 82.7 29 0.00062 29.5 13.4 157 53-209 58-241 (330)
240 cd03565 VHS_Tom1 VHS domain fa 82.3 17 0.00038 26.7 8.7 73 6-79 36-114 (141)
241 PF01347 Vitellogenin_N: Lipop 81.9 18 0.00039 33.4 10.5 96 90-202 484-586 (618)
242 KOG1078 Vesicle coat complex C 80.4 24 0.00052 33.4 10.3 68 8-81 245-312 (865)
243 cd03568 VHS_STAM VHS domain fa 79.9 9.3 0.0002 28.3 6.5 91 51-144 37-129 (144)
244 COG5116 RPN2 26S proteasome re 79.8 44 0.00096 30.8 11.5 99 51-163 551-650 (926)
245 COG5218 YCG1 Chromosome conden 79.6 52 0.0011 30.5 14.9 121 77-207 78-198 (885)
246 PF04064 DUF384: Domain of unk 79.6 4.4 9.5E-05 25.0 3.9 50 157-206 1-50 (58)
247 PRK14707 hypothetical protein; 78.4 1E+02 0.0022 33.2 16.5 215 9-230 206-427 (2710)
248 KOG0211 Protein phosphatase 2A 78.2 43 0.00093 32.0 11.6 62 141-205 244-305 (759)
249 cd03561 VHS VHS domain family; 77.5 21 0.00045 25.9 7.7 74 51-124 37-114 (133)
250 COG5656 SXM1 Importin, protein 77.2 36 0.00077 32.3 10.4 137 4-145 404-553 (970)
251 PF08506 Cse1: Cse1; InterPro 76.9 18 0.00038 31.4 8.2 129 22-158 225-370 (370)
252 PF14726 RTTN_N: Rotatin, an a 75.7 23 0.0005 24.3 7.4 67 7-75 29-95 (98)
253 PF10521 DUF2454: Protein of u 75.6 39 0.00085 27.9 9.8 71 51-121 119-202 (282)
254 KOG1240 Protein kinase contain 75.6 27 0.00059 34.8 9.6 150 5-163 574-725 (1431)
255 KOG1832 HIV-1 Vpr-binding prot 75.0 5.8 0.00013 38.0 5.0 52 41-93 730-786 (1516)
256 PF12830 Nipped-B_C: Sister ch 74.6 18 0.0004 27.9 7.1 72 3-80 3-74 (187)
257 PF14663 RasGEF_N_2: Rapamycin 73.7 11 0.00023 26.8 5.1 40 135-174 9-48 (115)
258 PF15573 Imm27: Immunity prote 73.6 4.3 9.3E-05 32.2 3.3 35 177-211 48-82 (259)
259 KOG0567 HEAT repeat-containing 73.4 51 0.0011 27.2 15.0 61 133-204 217-279 (289)
260 PF08389 Xpo1: Exportin 1-like 73.4 28 0.0006 25.1 7.7 106 7-117 25-148 (148)
261 cd03567 VHS_GGA VHS domain fam 73.1 15 0.00032 27.1 5.9 72 51-122 38-116 (139)
262 KOG1992 Nuclear export recepto 72.1 51 0.0011 31.6 10.2 175 51-228 498-705 (960)
263 PF08216 CTNNBL: Catenin-beta- 72.0 31 0.00067 24.2 6.9 41 69-110 64-104 (108)
264 KOG1243 Protein kinase [Genera 71.8 81 0.0018 29.6 11.3 72 89-163 327-398 (690)
265 smart00288 VHS Domain present 71.4 20 0.00043 26.1 6.3 73 133-205 36-111 (133)
266 PF06012 DUF908: Domain of Unk 70.8 33 0.0007 29.2 8.3 65 109-173 238-307 (329)
267 PRK14707 hypothetical protein; 70.6 1.6E+02 0.0035 31.8 16.9 212 10-228 249-467 (2710)
268 COG5537 IRR1 Cohesin [Cell div 70.0 88 0.0019 29.0 10.9 136 18-163 285-422 (740)
269 KOG1943 Beta-tubulin folding c 69.9 1.2E+02 0.0026 30.1 13.1 141 17-163 553-705 (1133)
270 KOG2062 26S proteasome regulat 69.2 60 0.0013 30.8 9.8 123 9-150 555-681 (929)
271 KOG1788 Uncharacterized conser 68.9 1.3E+02 0.0029 30.2 14.0 78 127-205 901-982 (2799)
272 KOG4231 Intracellular membrane 68.4 3.5 7.6E-05 36.9 2.0 67 137-204 330-398 (763)
273 KOG0567 HEAT repeat-containing 68.0 64 0.0014 26.6 8.9 60 91-160 217-277 (289)
274 PF07923 N1221: N1221-like pro 67.8 19 0.00042 30.0 6.3 56 6-62 58-127 (293)
275 PF14663 RasGEF_N_2: Rapamycin 66.9 16 0.00036 25.8 4.9 39 176-215 9-47 (115)
276 PF10521 DUF2454: Protein of u 66.7 71 0.0015 26.4 9.4 70 8-78 119-201 (282)
277 COG5098 Chromosome condensatio 66.7 33 0.00072 32.3 7.7 109 53-163 301-415 (1128)
278 PF08389 Xpo1: Exportin 1-like 66.7 30 0.00065 24.9 6.6 125 24-158 4-148 (148)
279 KOG1991 Nuclear transport rece 66.4 1.4E+02 0.003 29.4 16.0 208 14-229 468-693 (1010)
280 PF04388 Hamartin: Hamartin pr 66.3 1.2E+02 0.0026 28.7 11.8 112 7-120 3-138 (668)
281 PF12726 SEN1_N: SEN1 N termin 66.1 1.2E+02 0.0027 28.8 12.5 110 56-168 446-557 (727)
282 KOG1087 Cytosolic sorting prot 66.1 33 0.00071 30.7 7.5 70 6-76 36-108 (470)
283 smart00638 LPD_N Lipoprotein N 64.3 1.2E+02 0.0025 27.9 13.3 92 92-200 442-540 (574)
284 PF06012 DUF908: Domain of Unk 63.4 46 0.001 28.2 7.8 76 68-143 239-325 (329)
285 KOG2152 Sister chromatid cohes 62.9 1.2E+02 0.0027 28.8 10.6 196 7-217 331-556 (865)
286 PF00790 VHS: VHS domain; Int 62.7 26 0.00056 25.6 5.5 72 51-122 42-118 (140)
287 PF14500 MMS19_N: Dos2-interac 61.4 90 0.002 25.6 10.2 141 12-158 3-148 (262)
288 KOG2956 CLIP-associating prote 61.3 1.2E+02 0.0027 27.1 13.6 144 8-162 329-476 (516)
289 KOG4231 Intracellular membrane 58.3 67 0.0014 29.2 7.9 71 51-122 328-399 (763)
290 KOG2676 Uncharacterized conser 57.7 11 0.00024 32.3 2.9 62 28-90 376-440 (478)
291 PF10274 ParcG: Parkin co-regu 57.6 62 0.0013 25.0 6.8 37 4-40 72-112 (183)
292 PF07923 N1221: N1221-like pro 57.6 25 0.00054 29.3 5.1 55 132-186 58-127 (293)
293 PF11791 Aconitase_B_N: Aconit 57.5 29 0.00062 25.9 4.8 26 136-161 96-121 (154)
294 PF07539 DRIM: Down-regulated 56.2 31 0.00067 25.4 4.9 35 84-119 9-43 (141)
295 PF01347 Vitellogenin_N: Lipop 56.1 1.7E+02 0.0037 27.0 13.3 150 7-163 346-519 (618)
296 KOG2199 Signal transducing ada 55.7 61 0.0013 28.3 7.0 72 7-79 44-117 (462)
297 PF13925 Katanin_con80: con80 52.8 78 0.0017 23.9 6.8 57 20-79 41-97 (164)
298 KOG2011 Sister chromatid cohes 51.7 1.6E+02 0.0034 29.4 9.8 133 19-160 298-432 (1048)
299 PF12231 Rif1_N: Rap1-interact 51.6 1.6E+02 0.0035 25.5 11.3 178 17-204 2-203 (372)
300 KOG4524 Uncharacterized conser 51.6 1.2E+02 0.0027 29.6 9.0 93 7-103 802-900 (1014)
301 smart00638 LPD_N Lipoprotein N 51.5 2E+02 0.0042 26.4 13.7 102 93-204 394-508 (574)
302 PF06685 DUF1186: Protein of u 51.4 1.3E+02 0.0029 24.5 8.2 73 132-215 71-153 (249)
303 PF12783 Sec7_N: Guanine nucle 50.9 59 0.0013 24.4 5.9 81 131-213 70-154 (168)
304 PF12397 U3snoRNP10: U3 small 50.8 85 0.0018 22.0 6.5 72 6-82 4-76 (121)
305 PF14666 RICTOR_M: Rapamycin-i 50.7 1.3E+02 0.0028 24.1 8.4 112 90-204 49-190 (226)
306 PF04499 SAPS: SIT4 phosphatas 50.6 1.9E+02 0.0042 26.1 10.9 108 8-120 21-146 (475)
307 KOG1992 Nuclear export recepto 50.5 1.8E+02 0.0038 28.2 9.6 35 3-37 493-527 (960)
308 COG5330 Uncharacterized protei 50.4 1.3E+02 0.0028 26.0 8.2 73 7-82 6-78 (364)
309 PF14631 FancD2: Fanconi anaem 48.7 1.2E+02 0.0025 31.6 8.9 109 51-165 431-544 (1426)
310 KOG1020 Sister chromatid cohes 48.3 3.4E+02 0.0075 28.3 12.4 108 7-124 815-923 (1692)
311 PF04821 TIMELESS: Timeless pr 47.3 1.6E+02 0.0034 24.2 13.0 63 5-80 10-72 (266)
312 PF09324 DUF1981: Domain of un 47.2 39 0.00085 22.4 3.9 53 172-229 14-66 (86)
313 PF09324 DUF1981: Domain of un 46.8 83 0.0018 20.8 5.4 65 90-158 15-83 (86)
314 PF10274 ParcG: Parkin co-regu 46.8 76 0.0016 24.6 5.8 72 51-123 38-110 (183)
315 PF11864 DUF3384: Domain of un 46.7 2.2E+02 0.0047 25.5 14.2 66 134-205 213-285 (464)
316 PF03378 CAS_CSE1: CAS/CSE pro 45.5 1.3E+02 0.0028 26.8 7.8 133 92-229 26-185 (435)
317 PF12726 SEN1_N: SEN1 N termin 45.2 2.6E+02 0.0057 26.7 10.4 57 67-124 497-555 (727)
318 PF14631 FancD2: Fanconi anaem 45.2 3.8E+02 0.0083 28.0 11.8 113 7-123 472-588 (1426)
319 PF12765 Cohesin_HEAT: HEAT re 45.0 39 0.00085 19.1 3.1 24 8-31 18-41 (42)
320 KOG2933 Uncharacterized conser 44.8 1.7E+02 0.0036 24.9 7.8 106 6-120 127-232 (334)
321 PF03130 HEAT_PBS: PBS lyase H 44.8 14 0.0003 18.5 1.1 25 151-185 2-26 (27)
322 KOG1949 Uncharacterized conser 44.6 1.7E+02 0.0037 27.9 8.5 72 3-76 160-245 (1005)
323 PF14666 RICTOR_M: Rapamycin-i 44.0 1.7E+02 0.0036 23.5 14.6 141 9-162 52-224 (226)
324 KOG4653 Uncharacterized conser 43.6 2.6E+02 0.0057 27.3 9.6 159 63-229 739-919 (982)
325 COG5116 RPN2 26S proteasome re 43.5 1.3E+02 0.0028 27.9 7.4 122 8-147 551-675 (926)
326 KOG1525 Sister chromatid cohes 43.3 1E+02 0.0023 31.3 7.5 73 3-77 254-326 (1266)
327 COG5110 RPN1 26S proteasome re 42.9 2.8E+02 0.0061 25.7 11.3 210 2-218 39-315 (881)
328 KOG2676 Uncharacterized conser 42.7 39 0.00084 29.1 3.9 64 154-217 376-442 (478)
329 KOG2038 CAATT-binding transcri 42.6 92 0.002 29.8 6.5 77 7-89 303-380 (988)
330 KOG1791 Uncharacterized conser 42.2 4.3E+02 0.0094 27.8 13.9 216 12-231 1443-1687(1758)
331 PF13251 DUF4042: Domain of un 41.6 1.6E+02 0.0035 22.7 9.5 138 24-164 2-175 (182)
332 PF01365 RYDR_ITPR: RIH domain 41.2 1.5E+02 0.0033 23.0 7.1 95 23-124 76-171 (207)
333 PF12830 Nipped-B_C: Sister ch 40.4 1.7E+02 0.0036 22.5 9.8 145 52-207 9-169 (187)
334 KOG4464 Signaling protein RIC- 39.7 2.7E+02 0.0059 24.7 10.1 134 95-229 48-198 (532)
335 PF12074 DUF3554: Domain of un 39.0 2.4E+02 0.0052 23.8 8.9 110 67-186 3-114 (339)
336 cd08050 TAF6 TATA Binding Prot 38.9 2.5E+02 0.0054 24.0 12.5 145 7-162 177-339 (343)
337 KOG2199 Signal transducing ada 38.6 1.1E+02 0.0025 26.7 6.1 92 51-145 45-138 (462)
338 KOG4464 Signaling protein RIC- 38.4 2.9E+02 0.0062 24.6 9.3 162 41-208 41-234 (532)
339 PLN03205 ATR interacting prote 38.1 1.3E+02 0.0028 26.6 6.4 113 8-121 323-445 (652)
340 PF14500 MMS19_N: Dos2-interac 38.0 2.3E+02 0.0049 23.3 13.3 154 4-164 38-238 (262)
341 KOG2312 Predicted transcriptio 37.9 5 0.00011 37.1 -2.0 151 31-185 16-171 (847)
342 PF12397 U3snoRNP10: U3 small 36.5 1.5E+02 0.0032 20.8 6.1 68 93-165 7-76 (121)
343 PF07539 DRIM: Down-regulated 35.9 75 0.0016 23.4 4.2 28 133-160 16-43 (141)
344 KOG2029 Uncharacterized conser 34.4 2.3E+02 0.0049 26.5 7.5 87 68-156 267-355 (697)
345 PF12783 Sec7_N: Guanine nucle 34.1 2E+02 0.0043 21.5 8.1 75 8-85 73-151 (168)
346 PF12054 DUF3535: Domain of un 32.8 3E+02 0.0064 24.6 8.1 76 64-144 289-364 (441)
347 PF04821 TIMELESS: Timeless pr 32.7 1.8E+02 0.0039 23.9 6.4 145 52-208 14-211 (266)
348 PF01603 B56: Protein phosphat 32.4 1.2E+02 0.0027 26.6 5.7 53 7-61 132-184 (409)
349 PLN03076 ARF guanine nucleotid 32.2 6.3E+02 0.014 27.2 11.2 133 25-163 1109-1253(1780)
350 KOG1566 Conserved protein Mo25 30.6 3.4E+02 0.0074 23.1 18.8 185 42-231 71-270 (342)
351 PF12333 Ipi1_N: Rix1 complex 30.6 1.8E+02 0.0039 19.9 6.0 58 3-63 2-65 (102)
352 KOG1791 Uncharacterized conser 30.4 4.1E+02 0.0088 27.9 9.1 189 42-231 1431-1641(1758)
353 PF14852 Fis1_TPR_N: Fis1 N-te 29.6 1E+02 0.0022 16.7 3.2 28 12-39 7-34 (35)
354 KOG0392 SNF2 family DNA-depend 29.5 4.8E+02 0.01 26.9 9.3 156 6-165 165-327 (1549)
355 PF12463 DUF3689: Protein of u 29.4 3.5E+02 0.0076 22.8 10.8 128 85-212 2-181 (303)
356 COG5537 IRR1 Cohesin [Cell div 28.6 2.3E+02 0.005 26.4 6.6 97 64-163 288-386 (740)
357 KOG2374 Uncharacterized conser 28.6 4.1E+02 0.0088 24.2 8.0 55 2-59 38-92 (661)
358 PF07571 DUF1546: Protein of u 28.5 1.4E+02 0.0031 20.0 4.3 56 106-161 19-76 (92)
359 PF11791 Aconitase_B_N: Aconit 27.9 45 0.00097 24.9 1.8 26 53-78 96-121 (154)
360 cd08050 TAF6 TATA Binding Prot 27.8 3.9E+02 0.0084 22.9 10.5 111 93-203 211-338 (343)
361 KOG1087 Cytosolic sorting prot 27.1 1.5E+02 0.0032 26.7 5.3 69 133-201 37-108 (470)
362 PF12331 DUF3636: Protein of u 26.9 1.4E+02 0.0031 22.2 4.4 39 191-229 109-147 (149)
363 KOG1851 Uncharacterized conser 26.7 4.1E+02 0.0089 27.9 8.5 73 7-80 1525-1598(1710)
364 cd03565 VHS_Tom1 VHS domain fa 26.5 2.6E+02 0.0057 20.4 6.7 72 92-163 38-115 (141)
365 PF03810 IBN_N: Importin-beta 25.4 1.5E+02 0.0033 18.4 4.0 32 91-122 13-45 (77)
366 COG5656 SXM1 Importin, protein 24.7 6.5E+02 0.014 24.4 12.6 155 7-170 370-535 (970)
367 PF12530 DUF3730: Protein of u 24.4 3.7E+02 0.008 21.5 16.1 65 72-146 105-171 (234)
368 smart00567 EZ_HEAT E-Z type HE 24.3 1.1E+02 0.0023 15.3 2.9 27 109-145 3-29 (30)
369 PF01417 ENTH: ENTH domain; I 24.1 2E+02 0.0044 20.3 4.8 53 4-56 35-91 (125)
370 PF12243 CTK3: CTD kinase subu 23.8 2.3E+02 0.0049 20.9 4.9 111 1-122 1-119 (139)
371 PLN03205 ATR interacting prote 23.5 4.1E+02 0.0088 23.6 7.0 116 93-210 324-451 (652)
372 PF12463 DUF3689: Protein of u 23.0 4.6E+02 0.01 22.1 11.2 122 43-165 2-175 (303)
373 PF01603 B56: Protein phosphat 22.6 3.1E+02 0.0067 24.1 6.4 58 127-184 126-183 (409)
374 KOG0413 Uncharacterized conser 21.8 5.8E+02 0.013 25.7 8.1 91 23-124 946-1037(1529)
375 KOG2073 SAP family cell cycle 21.5 4.1E+02 0.0089 26.0 7.2 144 40-200 180-331 (838)
376 KOG3533 Inositol 1,4,5-trispho 21.5 5.1E+02 0.011 27.2 7.8 95 133-228 1992-2103(2706)
377 PF04388 Hamartin: Hamartin pr 21.1 7.2E+02 0.016 23.6 13.2 137 51-208 4-144 (668)
378 PF06685 DUF1186: Protein of u 20.9 4.7E+02 0.01 21.4 6.8 40 9-48 112-153 (249)
379 PF12331 DUF3636: Protein of u 20.7 1.8E+02 0.0038 21.7 3.8 53 51-103 80-147 (149)
380 KOG2152 Sister chromatid cohes 20.6 2.8E+02 0.0061 26.5 5.8 54 135-188 333-388 (865)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.96 E-value=4.7e-28 Score=234.41 Aligned_cols=226 Identities=18% Similarity=0.202 Sum_probs=192.7
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhH
Q 044293 7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQ 86 (236)
Q Consensus 7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~ 86 (236)
.++||.|+++|+++++..|..|++.|++++..+++++..+.++ |+||.|+++|++++++++++|+++|.|++.++++++
T Consensus 445 ~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIiea-GaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir 523 (2102)
T PLN03200 445 REGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAA-GGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIR 523 (2102)
T ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC-CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHH
Confidence 4589999999999999999999999999999888999999998 999999999999999999999999999999887755
Q ss_pred Hhh-hcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchh---------------------------------------
Q 044293 87 SLA-SMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKN--------------------------------------- 126 (236)
Q Consensus 87 ~i~-~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~--------------------------------------- 126 (236)
.++ +.|++++|+++|+++ +.+.++.|+++|++|+...++
T Consensus 524 ~iV~~aGAIppLV~LL~sg-d~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~ 602 (2102)
T PLN03200 524 ACVESAGAVPALLWLLKNG-GPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVR 602 (2102)
T ss_pred HHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHH
Confidence 544 789999999999998 899999999999998532111
Q ss_pred -----------------------------------------hhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcC-
Q 044293 127 -----------------------------------------KARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQF- 164 (236)
Q Consensus 127 -----------------------------------------~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~- 164 (236)
...+...|+||+|+.+|++++.++++.++++|.+++.+
T Consensus 603 ~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~ 682 (2102)
T PLN03200 603 EGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSI 682 (2102)
T ss_pred HhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCC
Confidence 11122345666666666666666777788888899863
Q ss_pred -CCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChhhHHHHHhcCCcHHHHHHHhhCCcccccC
Q 044293 165 -HGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGMIALTKTDQIVSLMVDVLKGRSMFSKE 236 (236)
Q Consensus 165 -~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~~i~~lv~~l~~~~~~~k~ 236 (236)
++++..+++.|++|+|+++|++.+ .++.+.|+.+|.|++.+++++.++.++|+ +++|+++|+.|++.+||
T Consensus 683 ~~~q~~~~v~~GaV~pL~~LL~~~d-~~v~e~Al~ALanLl~~~e~~~ei~~~~~-I~~Lv~lLr~G~~~~k~ 753 (2102)
T PLN03200 683 KENRKVSYAAEDAIKPLIKLAKSSS-IEVAEQAVCALANLLSDPEVAAEALAEDI-ILPLTRVLREGTLEGKR 753 (2102)
T ss_pred CHHHHHHHHHcCCHHHHHHHHhCCC-hHHHHHHHHHHHHHHcCchHHHHHHhcCc-HHHHHHHHHhCChHHHH
Confidence 345677899999999999999874 78999999999999999999999999998 89999999999998875
No 2
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.95 E-value=2.5e-26 Score=222.60 Aligned_cols=227 Identities=17% Similarity=0.208 Sum_probs=201.4
Q ss_pred chHHHhHHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCC
Q 044293 3 APRVRETINNCVSRSQSD--SYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSL 80 (236)
Q Consensus 3 ~~~~~~~i~~lv~~L~~~--~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~ 80 (236)
++.+...+..+++.|+++ +++.+++++..|+.+++.++++|..+.+..|+||.|+.+|+++++.++++++.+|.+++.
T Consensus 8 ~~~~~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~ 87 (2102)
T PLN03200 8 PDGTLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCK 87 (2102)
T ss_pred ccchHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 456688999999999866 788999999999999999999999999755999999999999999999999999999999
Q ss_pred CCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhccc---chhhhhh-cccCcHHHHHHhhcCCCc---HHHHH
Q 044293 81 NPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAML---DKNKARF-GVAGTVQVLVKAVSAPSN---PAGHH 153 (236)
Q Consensus 81 ~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~---~~~~~~i-~~~g~i~~Lv~lL~~~~~---~~~~~ 153 (236)
++++|..|+..|+||+|+++|+++ +.+.+++|+++|++|+.+ +.++..+ ...|+||+|+.++++++. .+++.
T Consensus 88 ~e~nk~~Iv~~GaIppLV~LL~sG-s~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~ 166 (2102)
T PLN03200 88 EEDLRVKVLLGGCIPPLLSLLKSG-SAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGL 166 (2102)
T ss_pred CHHHHHHHHHcCChHHHHHHHHCC-CHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHH
Confidence 999999999999999999999999 899999999999999987 4455454 469999999999998742 24577
Q ss_pred HHHHHHHHhcCCCChHH-HHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCC-hhhHHHHHhcCCcHHHHHHHhhCCc
Q 044293 154 LLSSLAELVQFHGNSTL-AVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARF-DEGMIALTKTDQIVSLMVDVLKGRS 231 (236)
Q Consensus 154 a~~aL~~L~~~~~~~~~-~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~g~~i~~lv~~l~~~~ 231 (236)
++.+|++||.+++++.. +++.|++|.++.+|++++ +..+..|+.+|.+++.+ ++.+..+++.|+ ||.|++++++++
T Consensus 167 Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d-~~lQ~eAa~aLa~Lass~ee~~~aVIeaGa-VP~LV~LL~sg~ 244 (2102)
T PLN03200 167 LTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGN-SDAQANAASLLARLMMAFESSISKVLDAGA-VKQLLKLLGQGN 244 (2102)
T ss_pred HHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHCCC-HHHHHHHHccCC
Confidence 78999999999998854 589999999999999874 78999999999888854 789999999997 899999998765
Q ss_pred c
Q 044293 232 M 232 (236)
Q Consensus 232 ~ 232 (236)
+
T Consensus 245 ~ 245 (2102)
T PLN03200 245 E 245 (2102)
T ss_pred C
Confidence 4
No 3
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.6e-25 Score=183.02 Aligned_cols=222 Identities=17% Similarity=0.251 Sum_probs=204.7
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhH
Q 044293 7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQ 86 (236)
Q Consensus 7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~ 86 (236)
.+.+.-+..+-++.+-.+|.+++.+|.+++.. .++|+.++.+ |++|.||+++++++.++|.-++.++.|++-+..+|+
T Consensus 166 sGaL~pltrLakskdirvqrnatgaLlnmThs-~EnRr~LV~a-G~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk 243 (550)
T KOG4224|consen 166 SGALEPLTRLAKSKDIRVQRNATGALLNMTHS-RENRRVLVHA-GGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARK 243 (550)
T ss_pred ccchhhhHhhcccchhhHHHHHHHHHHHhhhh-hhhhhhhhcc-CCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHH
Confidence 45566666755778888999999999999886 6899999998 999999999999999999999999999999999999
Q ss_pred Hhhhcc--cHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcC
Q 044293 87 SLASME--TIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQF 164 (236)
Q Consensus 87 ~i~~~g--~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~ 164 (236)
.+++.+ .+|.|+++++++ ++.++-.|..+|.+++.+.++...+++.|++|.++++|+++.-+..-..+.|++|++.+
T Consensus 244 ~Laqaep~lv~~Lv~Lmd~~-s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisih 322 (550)
T KOG4224|consen 244 ILAQAEPKLVPALVDLMDDG-SDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIH 322 (550)
T ss_pred HHHhcccchHHHHHHHHhCC-ChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccc
Confidence 999776 999999999999 89999999999999999999999999999999999999998888888889999999999
Q ss_pred CCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC-ChhhHHHHHhcCCcHHHHHHHhhCCcc
Q 044293 165 HGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR-FDEGMIALTKTDQIVSLMVDVLKGRSM 232 (236)
Q Consensus 165 ~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~~i~~lv~~l~~~~~ 232 (236)
+-|--.++++|.+.+|+.+|..+++++++-+|..+|.||+. ...++..|.+.|+ ||.+.+++..++.
T Consensus 323 plNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgA-i~kl~eL~lD~pv 390 (550)
T KOG4224|consen 323 PLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGA-IPKLIELLLDGPV 390 (550)
T ss_pred cCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCc-hHHHHHHHhcCCh
Confidence 99999999999999999999998878899999999999997 6689999999998 8999999887763
No 4
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=5.1e-25 Score=189.60 Aligned_cols=220 Identities=15% Similarity=0.194 Sum_probs=194.7
Q ss_pred HhHHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCch-
Q 044293 7 RETINNCVSRSQ-SDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDL- 84 (236)
Q Consensus 7 ~~~i~~lv~~L~-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~- 84 (236)
.+.||.+|+.|. ..++..|..|+|+|.+.+..+.+....++++ |++|.|+.++.+++..+++.|.++|.|++.+...
T Consensus 108 ~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~a-gavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~ 186 (514)
T KOG0166|consen 108 SGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDA-GAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDC 186 (514)
T ss_pred cCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccC-CchHHHHHHhcCCcHHHHHHHHHHHhccccCChHH
Confidence 478999999997 5569999999999999999988889999998 9999999999999999999999999999999865
Q ss_pred hHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcc-cCcHHHHHHhhcCCCcHHHHHHHHHHHHHhc
Q 044293 85 KQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGV-AGTVQVLVKAVSAPSNPAGHHLLSSLAELVQ 163 (236)
Q Consensus 85 ~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~ 163 (236)
|..+.+.|++++|+.++.......+.++++|+|.|||........+.. ..++|.|..++.+.++.+...|+|++++|+.
T Consensus 187 Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsd 266 (514)
T KOG0166|consen 187 RDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTD 266 (514)
T ss_pred HHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 888889999999999999873347889999999999998876666665 7899999999999999999999999999998
Q ss_pred CCCC-hHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCCh-hhHHHHHhcCCcHHHHHHHhhC
Q 044293 164 FHGN-STLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFD-EGMIALTKTDQIVSLMVDVLKG 229 (236)
Q Consensus 164 ~~~~-~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~-~~~~~i~~~g~~i~~lv~~l~~ 229 (236)
++.. .+.+++.|++|.|+++|...+ ..++..|++++.|++.+. +..+.+..+|+ +|.|..++.+
T Consensus 267 g~ne~iq~vi~~gvv~~LV~lL~~~~-~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~-L~~l~~ll~~ 332 (514)
T KOG0166|consen 267 GSNEKIQMVIDAGVVPRLVDLLGHSS-PKVVTPALRAIGNIVTGSDEQTQVVINSGA-LPVLSNLLSS 332 (514)
T ss_pred CChHHHHHHHHccchHHHHHHHcCCC-cccccHHHhhccceeeccHHHHHHHHhcCh-HHHHHHHhcc
Confidence 6654 555688999999999999874 668889999999998655 56666778886 8999999874
No 5
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=4.8e-26 Score=186.00 Aligned_cols=219 Identities=15% Similarity=0.133 Sum_probs=202.8
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhH
Q 044293 7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQ 86 (236)
Q Consensus 7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~ 86 (236)
++.++...-++++.++.+|+.|..++.+++.+ .+++-.+++. +|++.|+.-...+..++|.++..+++|++..+++|.
T Consensus 84 res~epvl~llqs~d~~Iq~aa~~alGnlAVn-~enk~liv~l-~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~ 161 (550)
T KOG4224|consen 84 RESNEPVLALLQSCDKCIQCAAGEALGNLAVN-MENKGLIVSL-LGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKV 161 (550)
T ss_pred hhhhhHHHHHHhCcchhhhhhhhhhhccceec-cCCceEEEec-cChHHHHHHhcCCCcEEEeeehhhhhhhhccccchh
Confidence 45666777788999999999999999999987 5789999999 999999988878888999999999999999999999
Q ss_pred HhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCC
Q 044293 87 SLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHG 166 (236)
Q Consensus 87 ~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~ 166 (236)
.|...|++.+++++-++. +.-+++++.++|.|++...+|++.++..|++|.||.++.+++.+++.+|+.++.+++....
T Consensus 162 kiA~sGaL~pltrLaksk-dirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~ 240 (550)
T KOG4224|consen 162 KIARSGALEPLTRLAKSK-DIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRR 240 (550)
T ss_pred hhhhccchhhhHhhcccc-hhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHH
Confidence 999999999999976666 8899999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHhC--cHHHHHHHhcCCChhhHHHHHHHHHHHHcCChhhHHHHHhcCCcHHHHHHHhhCC
Q 044293 167 NSTLAVRAG--AVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGMIALTKTDQIVSLMVDVLKGR 230 (236)
Q Consensus 167 ~~~~~~~~g--~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~~i~~lv~~l~~~ 230 (236)
+|+.+.+.| ++|.|++++.+++ +.++-+|--+|.|++.+.+.+..+++.|+ +|.+++++++.
T Consensus 241 ~Rk~Laqaep~lv~~Lv~Lmd~~s-~kvkcqA~lALrnlasdt~Yq~eiv~ag~-lP~lv~Llqs~ 304 (550)
T KOG4224|consen 241 ARKILAQAEPKLVPALVDLMDDGS-DKVKCQAGLALRNLASDTEYQREIVEAGS-LPLLVELLQSP 304 (550)
T ss_pred HHHHHHhcccchHHHHHHHHhCCC-hHHHHHHHHHHhhhcccchhhhHHHhcCC-chHHHHHHhCc
Confidence 999999988 9999999999985 67778899999999999999999999998 79999999764
No 6
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1.7e-22 Score=174.14 Aligned_cols=222 Identities=18% Similarity=0.210 Sum_probs=194.3
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCCh-HHHHHHHHHHHhhCCCCchhH
Q 044293 8 ETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSP-IIRTLSLSILLNLSLNPDLKQ 86 (236)
Q Consensus 8 ~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~-~~~~~a~~~L~~l~~~~~~~~ 86 (236)
+.+|.++.++.+++.+++++|+|+|.+.+.+++..|..+... |++++|+.++...++ ...++++|+|.|||.+.+--.
T Consensus 152 gavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~-g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P 230 (514)
T KOG0166|consen 152 GAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSC-GALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSP 230 (514)
T ss_pred CchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhh-cchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCC
Confidence 578999999999999999999999999999999999999998 999999999988776 678899999999999886544
Q ss_pred Hhh-hcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccch-hhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcC
Q 044293 87 SLA-SMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDK-NKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQF 164 (236)
Q Consensus 87 ~i~-~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~ 164 (236)
.+. -...+|.|.+++++. |+++...|+|+|.+|+.... .-+.+.+.|++|.|+.+|.+.++.++..|++++.|+..+
T Consensus 231 ~~~~v~~iLp~L~~ll~~~-D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG 309 (514)
T KOG0166|consen 231 PFDVVAPILPALLRLLHST-DEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTG 309 (514)
T ss_pred cHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeec
Confidence 433 467999999999999 89999999999999997664 445556799999999999999999999999999999998
Q ss_pred CCChHH-HHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC-ChhhHHHHHhcCCcHHHHHHHhhCCcc
Q 044293 165 HGNSTL-AVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR-FDEGMIALTKTDQIVSLMVDVLKGRSM 232 (236)
Q Consensus 165 ~~~~~~-~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~~i~~lv~~l~~~~~ 232 (236)
.+...+ ++..|++|.|..++..+....+++.|++++.|++. +++-...+...| ++|.|+++|+.+..
T Consensus 310 ~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~-l~p~Li~~l~~~ef 378 (514)
T KOG0166|consen 310 SDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDAN-LIPVLINLLQTAEF 378 (514)
T ss_pred cHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcc-cHHHHHHHHhccch
Confidence 877766 56799999999999865445588899999999985 567888888887 79999999988763
No 7
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.89 E-value=5.7e-23 Score=166.89 Aligned_cols=227 Identities=12% Similarity=0.122 Sum_probs=189.4
Q ss_pred HhHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCch-
Q 044293 7 RETINNCVSRSQS-DSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDL- 84 (236)
Q Consensus 7 ~~~i~~lv~~L~~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~- 84 (236)
-+.+|++|+++.. .....+.+|+|+|.+.+.........++++ |++|.++++|.+++.++++.+.|+|.|++.+...
T Consensus 113 aGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~-~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~ 191 (526)
T COG5064 113 AGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDA-GAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGC 191 (526)
T ss_pred ccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeC-CchHHHHHHHcCchHHHHHHHHHHhccccCCchhH
Confidence 3578999999954 445578899999999999866666777888 9999999999999999999999999999999876
Q ss_pred hHHhhhcccHHHHHHHHhccC-CHHHHHHHHHHHHHhcccchhhhhhcc-cCcHHHHHHhhcCCCcHHHHHHHHHHHHHh
Q 044293 85 KQSLASMETIYRLNWIIQSSS-SQETVKLASSLICSLAMLDKNKARFGV-AGTVQVLVKAVSAPSNPAGHHLLSSLAELV 162 (236)
Q Consensus 85 ~~~i~~~g~i~~L~~lL~~~~-~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~ 162 (236)
|+.+.+.|.+++++.++.++. +..+.+++.|+|.|||........-.. ..++|.|.+++.+.++++...|+|++.+|+
T Consensus 192 RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYls 271 (526)
T COG5064 192 RDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLS 271 (526)
T ss_pred HHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhc
Confidence 777889999999999999773 358889999999999987643322222 567999999999999999999999999999
Q ss_pred cCCCChHH-HHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCCh-hhHHHHHhcCCcHHHHHHHhhC-CcccccC
Q 044293 163 QFHGNSTL-AVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFD-EGMIALTKTDQIVSLMVDVLKG-RSMFSKE 236 (236)
Q Consensus 163 ~~~~~~~~-~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~-~~~~~i~~~g~~i~~lv~~l~~-~~~~~k~ 236 (236)
..+..+.. ++..|..+.|+++|.+.+ ..++..|++...|+.... +....+.++|. ++.+-.+|.+ ...++||
T Consensus 272 Dg~~E~i~avld~g~~~RLvElLs~~s-a~iqtPalR~vGNIVTG~D~QTqviI~~G~-L~a~~~lLs~~ke~irKE 346 (526)
T COG5064 272 DGPNEKIQAVLDVGIPGRLVELLSHES-AKIQTPALRSVGNIVTGSDDQTQVIINCGA-LKAFRSLLSSPKENIRKE 346 (526)
T ss_pred cCcHHHHHHHHhcCCcHHHHHHhcCcc-ccccCHHHHhhcCeeecCccceehheeccc-HHHHHHHhcChhhhhhhh
Confidence 98876655 567999999999999874 678899999999998765 45556778886 7999888876 3355554
No 8
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.88 E-value=5.2e-21 Score=172.64 Aligned_cols=217 Identities=16% Similarity=0.207 Sum_probs=187.4
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhH
Q 044293 7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQ 86 (236)
Q Consensus 7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~ 86 (236)
.+.-+++-.+++..+ ...+.+...|.+++.+ ..+...+.+. |+|+.|+.+|++++.++...++.+|.+||.+++||.
T Consensus 249 ~~~~kk~~~l~~kQe-qLlrv~~~lLlNLAed-~~ve~kM~~~-~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~ 325 (708)
T PF05804_consen 249 EKELKKLQTLIRKQE-QLLRVAFYLLLNLAED-PRVELKMVNK-GIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKD 325 (708)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcC-hHHHHHHHhc-CCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 344444445554433 4455678889999987 6788999987 999999999999999999999999999999999999
Q ss_pred HhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCC
Q 044293 87 SLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHG 166 (236)
Q Consensus 87 ~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~ 166 (236)
.+.+.|++++|.++++++ +.+++..+.++|+|||.+++.|..+.+.|++|.|+.+|.+++ .+..++..|+++|..++
T Consensus 326 ~m~~~giV~kL~kLl~s~-~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~ 402 (708)
T PF05804_consen 326 EMAESGIVEKLLKLLPSE-NEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDE 402 (708)
T ss_pred HHHHcCCHHHHHHHhcCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHh
Confidence 999999999999999998 899999999999999999999999999999999999998764 55678999999999999
Q ss_pred ChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChhhHHHHHhcCCcHHHHHH-HhhCC
Q 044293 167 NSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGMIALTKTDQIVSLMVD-VLKGR 230 (236)
Q Consensus 167 ~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~~i~~lv~-~l~~~ 230 (236)
+|..+...+++|.+++++-.++.+++....+..+.|++.++.+.+.+.+.+| ++.|++ .++..
T Consensus 403 ~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~g-L~~L~~ra~~~~ 466 (708)
T PF05804_consen 403 ARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNG-LQSLMKRALKTR 466 (708)
T ss_pred hHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCc-HHHHHHHHHhcc
Confidence 9999999999999999886654456666788999999999999999998887 798887 44443
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.86 E-value=3.5e-20 Score=167.28 Aligned_cols=220 Identities=19% Similarity=0.294 Sum_probs=186.1
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhH
Q 044293 7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQ 86 (236)
Q Consensus 7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~ 86 (236)
++.|+.|++.|++++.+...-++..|.+++.. .+|+..+.+. |+|+.|+.++.+++.+.+..++.+|+|||.+++.|.
T Consensus 289 ~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~-~ENK~~m~~~-giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~ 366 (708)
T PF05804_consen 289 KGIVSLLVKCLDRENEELLILAVTFLKKLSIF-KENKDEMAES-GIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRS 366 (708)
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHc-CCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHH
Confidence 56899999999999999999999999999987 6799999998 999999999999999999999999999999999999
Q ss_pred HhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCC-CcHHHHHHHHHHHHHhcCC
Q 044293 87 SLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAP-SNPAGHHLLSSLAELVQFH 165 (236)
Q Consensus 87 ~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~~L~~~~ 165 (236)
.+++.|++|+|+.+|+.+ ..+..+..+|.++|.++++|..+...+++|.+++++.+. ++.+...++..+.||+.++
T Consensus 367 ~mV~~GlIPkLv~LL~d~---~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~ 443 (708)
T PF05804_consen 367 QMVSLGLIPKLVELLKDP---NFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNK 443 (708)
T ss_pred HHHHCCCcHHHHHHhCCC---chHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCH
Confidence 999999999999999854 566779999999999999999999999999999988764 4445556677778888888
Q ss_pred CChHHHHHhCcHHHHHH-------------------------------------HhcCCChhhHHHHHHHHHHHHcCChh
Q 044293 166 GNSTLAVRAGAVSELIH-------------------------------------LIGSTEAEDLAGTSLAVLNLLARFDE 208 (236)
Q Consensus 166 ~~~~~~~~~g~i~~lv~-------------------------------------ll~~~~~~~~~~~a~~~L~~l~~~~~ 208 (236)
+|.+.+++.|+++.|++ ++..+++++..-.|+++|.||...+.
T Consensus 444 rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~l 523 (708)
T PF05804_consen 444 RNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDL 523 (708)
T ss_pred HHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCc
Confidence 88888877777665544 33333345677789999999987776
Q ss_pred hHHHHHhcCCcHHHHHHHhhCCc
Q 044293 209 GMIALTKTDQIVSLMVDVLKGRS 231 (236)
Q Consensus 209 ~~~~i~~~g~~i~~lv~~l~~~~ 231 (236)
...++++..+++|.+.+.|+.|.
T Consensus 524 d~~~ll~~~~llp~L~~~L~~g~ 546 (708)
T PF05804_consen 524 DWAQLLQEYNLLPWLKDLLKPGA 546 (708)
T ss_pred CHHHHHHhCCHHHHHHHHhCCCC
Confidence 77777765557899999987664
No 10
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.83 E-value=6.8e-20 Score=149.08 Aligned_cols=216 Identities=20% Similarity=0.187 Sum_probs=186.5
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCCh--HHHHHHHHHHHhhCCCCch-
Q 044293 8 ETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSP--IIRTLSLSILLNLSLNPDL- 84 (236)
Q Consensus 8 ~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~--~~~~~a~~~L~~l~~~~~~- 84 (236)
+.+|.++++|.+++.+++.+++|+|.+.+.+++..|..+.+. |++++++.+|.+..+ ...+++.|.|.|||....-
T Consensus 157 ~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~-galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~ 235 (526)
T COG5064 157 GAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQC-GALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPP 235 (526)
T ss_pred CchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhc-CchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCC
Confidence 578999999999999999999999999999999999999998 999999999887654 6788999999999986433
Q ss_pred --hHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhh-hhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHH
Q 044293 85 --KQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNK-ARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAEL 161 (236)
Q Consensus 85 --~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L 161 (236)
-..+ .-.+|.|.+++.+- |+++...|+|+|.+|+..+..+ ..+.+.|..+.|+.+|.+++..++..+++.+.|+
T Consensus 236 P~w~~i--sqalpiL~KLiys~-D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNI 312 (526)
T COG5064 236 PDWSNI--SQALPILAKLIYSR-DPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNI 312 (526)
T ss_pred CchHHH--HHHHHHHHHHHhhc-CHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCe
Confidence 2333 34789999999988 8999999999999999988545 4555799999999999999988999999999999
Q ss_pred hcCCCChHH-HHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC-ChhhHHHHHhcCCcHHHHHHHhhC
Q 044293 162 VQFHGNSTL-AVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR-FDEGMIALTKTDQIVSLMVDVLKG 229 (236)
Q Consensus 162 ~~~~~~~~~-~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~~i~~lv~~l~~ 229 (236)
....+...+ ++..|+++.+-.+|.+. ...+++.|++++.|++. +.+..+.+.+.. ++|+|+++|..
T Consensus 313 VTG~D~QTqviI~~G~L~a~~~lLs~~-ke~irKEaCWTiSNITAGnteqiqavid~n-liPpLi~lls~ 380 (526)
T COG5064 313 VTGSDDQTQVIINCGALKAFRSLLSSP-KENIRKEACWTISNITAGNTEQIQAVIDAN-LIPPLIHLLSS 380 (526)
T ss_pred eecCccceehheecccHHHHHHHhcCh-hhhhhhhhheeecccccCCHHHHHHHHhcc-cchHHHHHHHH
Confidence 997766665 57899999999999887 36899999999999985 556667777776 79999999865
No 11
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.77 E-value=6.3e-17 Score=130.81 Aligned_cols=194 Identities=19% Similarity=0.206 Sum_probs=170.4
Q ss_pred HhHHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchh
Q 044293 7 RETINNCVSRSQ-SDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLK 85 (236)
Q Consensus 7 ~~~i~~lv~~L~-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~ 85 (236)
.+.++.|+.+|+ +.++.++++++.++.+.+.. +.++..+.+. |+++.+..+|+++++.+++.|+.+|.|++.+.+|+
T Consensus 11 ~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf-~~nq~~Ir~~-Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~ 88 (254)
T PF04826_consen 11 AQELQKLLCLLESTEDPFIQEKALIALGNSAAF-PFNQDIIRDL-GGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ 88 (254)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-hhHHHHHHHc-CCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH
Confidence 356799999998 56899999999999998776 6899999998 99999999999999999999999999999999998
Q ss_pred HHhhhcccHHHHHHHHhcc-CCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcC
Q 044293 86 QSLASMETIYRLNWIIQSS-SSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQF 164 (236)
Q Consensus 86 ~~i~~~g~i~~L~~lL~~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~ 164 (236)
..|.. .++.+.....+. .+.+++..+.++|.+|+..+++...+. +.++.++.+|.+++..++..++++|.||+..
T Consensus 89 ~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~n 164 (254)
T PF04826_consen 89 EQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNLSEN 164 (254)
T ss_pred HHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHhccC
Confidence 88753 477777755543 367889999999999999888776664 5799999999999999999999999999999
Q ss_pred CCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCC
Q 044293 165 HGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARF 206 (236)
Q Consensus 165 ~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~ 206 (236)
+.....++.+.+++.++.+++.+...++...++..+.|+..+
T Consensus 165 p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 165 PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 999999999999999999998875577888999999999543
No 12
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.74 E-value=2.4e-17 Score=146.63 Aligned_cols=198 Identities=16% Similarity=0.173 Sum_probs=171.1
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCC---c
Q 044293 7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNP---D 83 (236)
Q Consensus 7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~---~ 83 (236)
...+|+.++||.+.++.+|..|+..++.+|+.+.+.|..+.+. |+|+.||.+|.+...+++..|+++|.||.... +
T Consensus 232 d~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrql-ggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~ 310 (717)
T KOG1048|consen 232 DPTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQL-GGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDS 310 (717)
T ss_pred ccccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHh-ccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcc
Confidence 4578999999999999999999999999999999999999999 99999999999999999999999999998764 4
Q ss_pred hhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCC--------------CcH
Q 044293 84 LKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAP--------------SNP 149 (236)
Q Consensus 84 ~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~--------------~~~ 149 (236)
||..|.+.++|+.++.+|+...|.++++..+++||||+.+|..|..+.. .+++.|..-+-.+ ...
T Consensus 311 NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~ 389 (717)
T KOG1048|consen 311 NKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAEDST 389 (717)
T ss_pred cchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHH-HHHHHHHHhhcccccccCCCCcccccccce
Confidence 7899999999999999999755899999999999999999888887764 5677777655321 124
Q ss_pred HHHHHHHHHHHHhc-CCCChHHHHH-hCcHHHHHHHhcCC-----ChhhHHHHHHHHHHHHcCC
Q 044293 150 AGHHLLSSLAELVQ-FHGNSTLAVR-AGAVSELIHLIGST-----EAEDLAGTSLAVLNLLARF 206 (236)
Q Consensus 150 ~~~~a~~aL~~L~~-~~~~~~~~~~-~g~i~~lv~ll~~~-----~~~~~~~~a~~~L~~l~~~ 206 (236)
+..++..+|+|++. ..+.|++|.+ .|.|..|+..++.. .+....++|+++|.||+..
T Consensus 390 vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYr 453 (717)
T KOG1048|consen 390 VFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYR 453 (717)
T ss_pred eeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCch
Confidence 56899999999998 7789999988 68999999988731 1245679999999999864
No 13
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.73 E-value=8.5e-16 Score=125.08 Aligned_cols=221 Identities=15% Similarity=0.174 Sum_probs=189.0
Q ss_pred HHHHHHHHhc--CCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCC-ChHHHHHHHHHHHhhCCCCchh
Q 044293 9 TINNCVSRSQ--SDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSS-SPIIRTLSLSILLNLSLNPDLK 85 (236)
Q Consensus 9 ~i~~lv~~L~--~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~~ 85 (236)
+...++++|. .++.++.......++.-|..++.||+.|.+. ++.|.+.+.|... ..++.+...++++.|..+++.|
T Consensus 146 g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~-~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiR 224 (461)
T KOG4199|consen 146 AMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMEL-KILELILQVLNREGKTRTVRELYDAIRALLTDDDIR 224 (461)
T ss_pred cHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHh-hHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCcee
Confidence 5566788884 5677788889999999998899999999999 9999999777654 3457788999999998887765
Q ss_pred H----------HhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcH----HH
Q 044293 86 Q----------SLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNP----AG 151 (236)
Q Consensus 86 ~----------~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~----~~ 151 (236)
- .|++.|++..|+..++-+-++++...++.+|..|+..++.+..|.+.|++..|++.+.+.+.. ..
T Consensus 225 V~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~ 304 (461)
T KOG4199|consen 225 VVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLA 304 (461)
T ss_pred eecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHH
Confidence 3 466778999999999988789999999999999999999999999999999999999885432 44
Q ss_pred HHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhc-CCChhhHHHHHHHHHHHHc-CChhhHHHHHhcCCcHHHHHHHhhC
Q 044293 152 HHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIG-STEAEDLAGTSLAVLNLLA-RFDEGMIALTKTDQIVSLMVDVLKG 229 (236)
Q Consensus 152 ~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~-~~~~~~~~~~a~~~L~~l~-~~~~~~~~i~~~g~~i~~lv~~l~~ 229 (236)
+.+++.|+.|+.++.++..+++.|+.+.++.++- ..++|.+.+.++.+++.|| +.|+.-..+++.|+ ....++.|+.
T Consensus 305 k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~-a~~avqAmka 383 (461)
T KOG4199|consen 305 KTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGA-ADLAVQAMKA 383 (461)
T ss_pred HHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcch-HHHHHHHHHh
Confidence 7888999999999999999999999999999984 4456889999999999998 68999999999887 6888888876
Q ss_pred Cc
Q 044293 230 RS 231 (236)
Q Consensus 230 ~~ 231 (236)
..
T Consensus 384 hP 385 (461)
T KOG4199|consen 384 HP 385 (461)
T ss_pred Cc
Confidence 53
No 14
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=3.2e-15 Score=121.73 Aligned_cols=216 Identities=14% Similarity=0.137 Sum_probs=178.7
Q ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCh---------HHHHHHHhccCcHHHHHhhccCC-ChHHHHHHHHHHHhh
Q 044293 10 INNCVSRSQ-SDSYEDQQKALQTLASITRVSP---------QYRSLLAQTDGAISTLLGLSKSS-SPIIRTLSLSILLNL 78 (236)
Q Consensus 10 i~~lv~~L~-~~~~~~~~~a~~~L~~l~~~~~---------~~~~~i~~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~l 78 (236)
.+.+.+.|. .+.....+.++++++.+..+++ ...+.|.+. |+...|++.++-. +|......+.+|..+
T Consensus 191 l~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e-~~l~~L~Eal~A~~dp~~L~~l~~tl~~l 269 (461)
T KOG4199|consen 191 LELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKE-GILTALTEALQAGIDPDSLVSLSTTLKAL 269 (461)
T ss_pred HHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHh-hhHHHHHHHHHccCCccHHHHHHHHHHHH
Confidence 344454664 3444678889999999887653 355677776 8999999998753 688888899999999
Q ss_pred CCCCchhHHhhhcccHHHHHHHHhccCCHHHH---HHHHHHHHHhcccchhhhhhcccCcHHHHHHhhc--CCCcHHHHH
Q 044293 79 SLNPDLKQSLASMETIYRLNWIIQSSSSQETV---KLASSLICSLAMLDKNKARFGVAGTVQVLVKAVS--APSNPAGHH 153 (236)
Q Consensus 79 ~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~---~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~--~~~~~~~~~ 153 (236)
+-.++.+..|.+.||+..|+.++.++++.+.+ +.++++|..|+..+++|..|++.|+.+.++.++. +.+|.+.+.
T Consensus 270 AVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~ 349 (461)
T KOG4199|consen 270 AVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQE 349 (461)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHH
Confidence 99999999999999999999999985344444 6799999999999999999999999999999885 457788899
Q ss_pred HHHHHHHHhc-CCCChHHHHHhCcHHHHHHHhcCCC-hhhHHHHHHHHHHHHcCC-hhhHHHHHhcCCcHHHHHHHhh
Q 044293 154 LLSSLAELVQ-FHGNSTLAVRAGAVSELIHLIGSTE-AEDLAGTSLAVLNLLARF-DEGMIALTKTDQIVSLMVDVLK 228 (236)
Q Consensus 154 a~~aL~~L~~-~~~~~~~~~~~g~i~~lv~ll~~~~-~~~~~~~a~~~L~~l~~~-~~~~~~i~~~g~~i~~lv~~l~ 228 (236)
++.++.-||. .|++...+++.|+-...++.|+..+ ...++.+++..+.|+... .+++..+...| ++.|++.-+
T Consensus 350 ~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~G--iE~Li~~A~ 425 (461)
T KOG4199|consen 350 VMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANG--IEKLIRTAK 425 (461)
T ss_pred HHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhcc--HHHHHHHHH
Confidence 9999999996 7899999999999999999997653 567889999999999865 57777777764 699988654
No 15
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.70 E-value=1.3e-15 Score=123.17 Aligned_cols=177 Identities=16% Similarity=0.184 Sum_probs=155.8
Q ss_pred HhccCcHHHHHhhccC-CChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccch
Q 044293 47 AQTDGAISTLLGLSKS-SSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDK 125 (236)
Q Consensus 47 ~~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~ 125 (236)
.+. +-++.|+.+|+. .+|.+++.++.++.+.+.++.++..+.+.|+++.+..+|.++ ++.+++.|..+|.|++.+.+
T Consensus 9 l~~-~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p-~~~vr~~AL~aL~Nls~~~e 86 (254)
T PF04826_consen 9 LEA-QELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDP-NPSVREKALNALNNLSVNDE 86 (254)
T ss_pred cCH-HHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCC-ChHHHHHHHHHHHhcCCChh
Confidence 344 778999999984 689999999999999999999999999999999999999998 89999999999999999999
Q ss_pred hhhhhcccCcHHHHHHhhcCC--CcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHH
Q 044293 126 NKARFGVAGTVQVLVKAVSAP--SNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLL 203 (236)
Q Consensus 126 ~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l 203 (236)
|+..|.. .++.+.+.+.+. +.+++..++++|.+|+..++++..+. +.+|.++.+|..++ ..++.+++++|.||
T Consensus 87 n~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~-~~~k~~vLk~L~nL 161 (254)
T PF04826_consen 87 NQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGS-EKTKVQVLKVLVNL 161 (254)
T ss_pred hHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCC-hHHHHHHHHHHHHh
Confidence 9998853 577777655543 66888999999999999888877764 57999999999985 67889999999999
Q ss_pred cCChhhHHHHHhcCCcHHHHHHHhhCCc
Q 044293 204 ARFDEGMIALTKTDQIVSLMVDVLKGRS 231 (236)
Q Consensus 204 ~~~~~~~~~i~~~g~~i~~lv~~l~~~~ 231 (236)
+.+++....+..+++ .+.++.++....
T Consensus 162 S~np~~~~~Ll~~q~-~~~~~~Lf~~~~ 188 (254)
T PF04826_consen 162 SENPDMTRELLSAQV-LSSFLSLFNSSE 188 (254)
T ss_pred ccCHHHHHHHHhccc-hhHHHHHHccCC
Confidence 999999999999887 799999997654
No 16
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.58 E-value=4.7e-14 Score=101.32 Aligned_cols=117 Identities=25% Similarity=0.228 Sum_probs=105.9
Q ss_pred HHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCC-CchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhccc
Q 044293 45 LLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLN-PDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAML 123 (236)
Q Consensus 45 ~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~ 123 (236)
.+.+. |+++.|+.++.++++++++.++.+|.+++.+ ++.+..+.+.|+++.++.++.++ ++.++..++++|.+++..
T Consensus 2 ~~~~~-~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~ 79 (120)
T cd00020 2 AVIQA-GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAALWALRNLAAG 79 (120)
T ss_pred hHHHc-CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccC
Confidence 35676 9999999999999999999999999999998 67788888899999999999988 899999999999999988
Q ss_pred c-hhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhc
Q 044293 124 D-KNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQ 163 (236)
Q Consensus 124 ~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~ 163 (236)
. ..+..+.+.|+++.|++++..++..+++.++++|.+||.
T Consensus 80 ~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 80 PEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred cHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 7 455666678999999999999999999999999999874
No 17
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.56 E-value=3.5e-14 Score=126.66 Aligned_cols=175 Identities=14% Similarity=0.182 Sum_probs=148.8
Q ss_pred cHHHHHhhccCCChHHHHHHHHHHHhhCCCCc-hhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccc---hhh
Q 044293 52 AISTLLGLSKSSSPIIRTLSLSILLNLSLNPD-LKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLD---KNK 127 (236)
Q Consensus 52 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~-~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~---~~~ 127 (236)
-+|..+.+|.+.++.+|.+|+.-+.++|..++ .|..+.+.|+|+.|+++|++. +.+++.+|+++|.||.... +||
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~-~~evq~~acgaLRNLvf~~~~~~NK 312 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHR-NDEVQRQACGALRNLVFGKSTDSNK 312 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCC-cHHHHHHHHHHHHhhhcccCCcccc
Confidence 36788889999999999999999999999775 488888999999999999999 8999999999999998754 589
Q ss_pred hhhcccCcHHHHHHhhcC-CCcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCC-------C------hhhHH
Q 044293 128 ARFGVAGTVQVLVKAVSA-PSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGST-------E------AEDLA 193 (236)
Q Consensus 128 ~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~-------~------~~~~~ 193 (236)
..|.+.++|+.++++|+. .+.++++....+|+||++++.-+..++. .++..|-+-+... + ..++.
T Consensus 313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf 391 (717)
T KOG1048|consen 313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF 391 (717)
T ss_pred hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHH-HHHHHHHHhhcccccccCCCCcccccccceee
Confidence 999999999999999996 6778999999999999999666666654 4445554443221 1 24567
Q ss_pred HHHHHHHHHHcC-ChhhHHHHHhcCCcHHHHHHHhh
Q 044293 194 GTSLAVLNLLAR-FDEGMIALTKTDQIVSLMVDVLK 228 (236)
Q Consensus 194 ~~a~~~L~~l~~-~~~~~~~i~~~g~~i~~lv~~l~ 228 (236)
.++..+|.|++. ..+.|+++.++.|+|..|+..++
T Consensus 392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq 427 (717)
T KOG1048|consen 392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQ 427 (717)
T ss_pred ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHH
Confidence 899999999997 78999999999999999999887
No 18
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.54 E-value=2.5e-13 Score=97.52 Aligned_cols=114 Identities=21% Similarity=0.211 Sum_probs=104.7
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCch-h
Q 044293 7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDL-K 85 (236)
Q Consensus 7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~-~ 85 (236)
.+.|+.+++++++++++.+..++.+|.+++..+++.+..+.+. |++|.++.+|++++++++..++++|.+++.++.. +
T Consensus 6 ~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~-~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~ 84 (120)
T cd00020 6 AGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEA-GGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNK 84 (120)
T ss_pred cCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHC-CChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHH
Confidence 3589999999999999999999999999999888889999987 9999999999999999999999999999998854 6
Q ss_pred HHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcc
Q 044293 86 QSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAM 122 (236)
Q Consensus 86 ~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~ 122 (236)
..+.+.|+++.++++++.+ +.++++.++++|.+|+.
T Consensus 85 ~~~~~~g~l~~l~~~l~~~-~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 85 LIVLEAGGVPKLVNLLDSS-NEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHCCChHHHHHHHhcC-CHHHHHHHHHHHHHhhC
Confidence 6677899999999999988 89999999999999873
No 19
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.52 E-value=3e-12 Score=113.99 Aligned_cols=199 Identities=17% Similarity=0.168 Sum_probs=169.8
Q ss_pred HHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchh
Q 044293 6 VRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLK 85 (236)
Q Consensus 6 ~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~ 85 (236)
.++..+.+...|.++++.++.-+++.|.++..++....+.+.+. +.++.++..+.+++..+.+.|+.+|.+++.++.+.
T Consensus 75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~-~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~ 153 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDN-ELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGL 153 (503)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCc-cHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhH
Confidence 35667778888889999999999999999998877767777777 99999999999999999999999999999999888
Q ss_pred HHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccc-hhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcC
Q 044293 86 QSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLD-KNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQF 164 (236)
Q Consensus 86 ~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~ 164 (236)
..+...++++.|..++... +..++-++..++.+++... +....+.+.|.++.+++-+.+++.-++.+++..|..|+.+
T Consensus 154 ~~l~~~~~~~~L~~l~~~~-~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~ 232 (503)
T PF10508_consen 154 EQLFDSNLLSKLKSLMSQS-SDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAET 232 (503)
T ss_pred HHHhCcchHHHHHHHHhcc-CHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcC
Confidence 8888888899999999987 6788999999999997654 5556666699999999999998878899999999999999
Q ss_pred CCChHHHHHhCcHHHHHHHhcCCC-hh---h-HHHHHHHHHHHHcCC
Q 044293 165 HGNSTLAVRAGAVSELIHLIGSTE-AE---D-LAGTSLAVLNLLARF 206 (236)
Q Consensus 165 ~~~~~~~~~~g~i~~lv~ll~~~~-~~---~-~~~~a~~~L~~l~~~ 206 (236)
+.+.+.+.+.|+++.+.+++.+.+ ++ . ..-..+....+++..
T Consensus 233 ~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~ 279 (503)
T PF10508_consen 233 PHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV 279 (503)
T ss_pred hhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc
Confidence 999999999999999999997642 22 1 223445677777764
No 20
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.51 E-value=1.8e-13 Score=127.86 Aligned_cols=208 Identities=17% Similarity=0.149 Sum_probs=175.4
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCC-ch-hHHhhhcccHHHHHH
Q 044293 22 YEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNP-DL-KQSLASMETIYRLNW 99 (236)
Q Consensus 22 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~-~~-~~~i~~~g~i~~L~~ 99 (236)
-..|+++..+|.||++.+..||..+....|+++.+|..|.+...++.-..+.+|.||+=.- .| |..+.+.|-+..|..
T Consensus 365 ~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~ 444 (2195)
T KOG2122|consen 365 NALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAA 444 (2195)
T ss_pred HHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHH
Confidence 3478899999999999988888877777799999999998877788888899999998754 34 777778999999998
Q ss_pred HHhccCCHHHHHHHHHHHHHhcccc-hhhhhhcc-cCcHHHHHHhhcCCC----cHHHHHHHHHHHHHhc----CCCChH
Q 044293 100 IIQSSSSQETVKLASSLICSLAMLD-KNKARFGV-AGTVQVLVKAVSAPS----NPAGHHLLSSLAELVQ----FHGNST 169 (236)
Q Consensus 100 lL~~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~-~g~i~~Lv~lL~~~~----~~~~~~a~~aL~~L~~----~~~~~~ 169 (236)
.--....+...+..+++||||+.+. +||..|-. -|++..||.+|.... -..++.+-.+|.|.++ .+..|+
T Consensus 445 ~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQ 524 (2195)
T KOG2122|consen 445 CALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQ 524 (2195)
T ss_pred HHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHH
Confidence 7655546688899999999997754 89999987 899999999998752 2466888889988776 456677
Q ss_pred HHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHc-CChhhHHHHHhcCCcHHHHHHHhhCCc
Q 044293 170 LAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLA-RFDEGMIALTKTDQIVSLMVDVLKGRS 231 (236)
Q Consensus 170 ~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~-~~~~~~~~i~~~g~~i~~lv~~l~~~~ 231 (236)
.+.+.+++..|++.|++.+ -.++.+++.+|.||. ++++.++.+|+.|+ ++.|-.++++..
T Consensus 525 ILR~~NCLq~LLQ~LKS~S-LTiVSNaCGTLWNLSAR~p~DQq~LwD~gA-v~mLrnLIhSKh 585 (2195)
T KOG2122|consen 525 ILRRHNCLQTLLQHLKSHS-LTIVSNACGTLWNLSARSPEDQQMLWDDGA-VPMLRNLIHSKH 585 (2195)
T ss_pred HHHHhhHHHHHHHHhhhcc-eEEeecchhhhhhhhcCCHHHHHHHHhccc-HHHHHHHHhhhh
Confidence 7888999999999999874 567899999999997 68999999999998 899998987643
No 21
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.50 E-value=5.7e-12 Score=112.18 Aligned_cols=210 Identities=17% Similarity=0.122 Sum_probs=179.2
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCch-hHHhhhc
Q 044293 13 CVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDL-KQSLASM 91 (236)
Q Consensus 13 lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~-~~~i~~~ 91 (236)
+...|++++.+....++..|..+.... ..... .. +..+.|...|.++++.++..++..|.++..+++. ...+.+.
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~-~~~~l--~~-~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~ 118 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSAL-SPDSL--LP-QYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDN 118 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhcc-CHHHH--HH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCc
Confidence 677788777777777888888877653 22222 22 7899999999999999999999999999998877 4555689
Q ss_pred ccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhc-CCCChHH
Q 044293 92 ETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQ-FHGNSTL 170 (236)
Q Consensus 92 g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~-~~~~~~~ 170 (236)
+.++.++.++.++ +.++.+.|+.+|.+++..+.....+...+.++.|..++...++.++..+..++.+++. +++....
T Consensus 119 ~l~~~i~~~L~~~-d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~ 197 (503)
T PF10508_consen 119 ELLPLIIQCLRDP-DLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEA 197 (503)
T ss_pred cHHHHHHHHHcCC-cHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 9999999999988 8999999999999999988888888888889999999998787888889999999986 4566677
Q ss_pred HHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChhhHHHHHhcCCcHHHHHHHhhC
Q 044293 171 AVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGMIALTKTDQIVSLMVDVLKG 229 (236)
Q Consensus 171 ~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~~i~~lv~~l~~ 229 (236)
+...|.++.++..+.+. +.-++.+|+.+|..|+..+.+.+-+.+.| +++.+.+++.+
T Consensus 198 ~~~sgll~~ll~eL~~d-DiLvqlnalell~~La~~~~g~~yL~~~g-i~~~L~~~l~~ 254 (503)
T PF10508_consen 198 VVNSGLLDLLLKELDSD-DILVQLNALELLSELAETPHGLQYLEQQG-IFDKLSNLLQD 254 (503)
T ss_pred HHhccHHHHHHHHhcCc-cHHHHHHHHHHHHHHHcChhHHHHHHhCC-HHHHHHHHHhc
Confidence 77899999999999985 46788999999999999999999999987 58999999865
No 22
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.44 E-value=3.2e-12 Score=107.41 Aligned_cols=221 Identities=15% Similarity=0.079 Sum_probs=163.5
Q ss_pred hHHHHHHHHhc--CCCHHHHHHHHHHHHHHhcCChHHHHHHHhc-----cCcHHHHHhhccCCChHHHHHHHHHHHhhCC
Q 044293 8 ETINNCVSRSQ--SDSYEDQQKALQTLASITRVSPQYRSLLAQT-----DGAISTLLGLSKSSSPIIRTLSLSILLNLSL 80 (236)
Q Consensus 8 ~~i~~lv~~L~--~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~-----~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~ 80 (236)
.....++.+|+ +++++...+.+..+..+..+++...+.|.+. .....+++.++.++|..++..|+.+|..+..
T Consensus 55 ~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~ 134 (312)
T PF03224_consen 55 QYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLS 134 (312)
T ss_dssp -------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 34455556664 3678899999999999998887666666652 1367889999999999999999999998877
Q ss_pred CCchhHHhhhcccHHHHHHHHhccC---CHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhh-----cC--CCcHH
Q 044293 81 NPDLKQSLASMETIYRLNWIIQSSS---SQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAV-----SA--PSNPA 150 (236)
Q Consensus 81 ~~~~~~~i~~~g~i~~L~~lL~~~~---~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL-----~~--~~~~~ 150 (236)
....+..-...+.++.+++.+.+.. +.+.+..|+.+|.+|...+.+|..+.+.|+++.|+.++ .+ .+.+.
T Consensus 135 ~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql 214 (312)
T PF03224_consen 135 QGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL 214 (312)
T ss_dssp STTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred cCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence 6655444433677788888887521 44566889999999999999999999999999999999 22 24567
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChh--hHHHHHhcCCcHHHHHHHhh
Q 044293 151 GHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDE--GMIALTKTDQIVSLMVDVLK 228 (236)
Q Consensus 151 ~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~--~~~~i~~~g~~i~~lv~~l~ 228 (236)
..+++-+++-|+.+++....+.+.+.+|.++++++....+.+...++.+|.|+...+. ....|+.+| ++++++.|+
T Consensus 215 ~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~--~l~~l~~L~ 292 (312)
T PF03224_consen 215 QYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCG--LLKTLQNLS 292 (312)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHcc--HHHHHHHHh
Confidence 8999999999999999999999999999999999887667788999999999998765 889999876 477777776
Q ss_pred CC
Q 044293 229 GR 230 (236)
Q Consensus 229 ~~ 230 (236)
.+
T Consensus 293 ~r 294 (312)
T PF03224_consen 293 ER 294 (312)
T ss_dssp SS
T ss_pred cC
Confidence 53
No 23
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=7.9e-12 Score=106.50 Aligned_cols=218 Identities=18% Similarity=0.247 Sum_probs=166.3
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHH
Q 044293 8 ETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQS 87 (236)
Q Consensus 8 ~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~ 87 (236)
-.+..||+-|..++.+...-....|..++-- .+|+-.+.+. |.|+.|+.++...+++++...+..+.|++.+...|..
T Consensus 304 niV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf-~eNK~~M~~~-~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~K 381 (791)
T KOG1222|consen 304 NIVAMLVKALDRSNSSLLTLVIKFLKKLSIF-DENKIVMEQN-GIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPK 381 (791)
T ss_pred hHHHHHHHHHcccchHHHHHHHHHHHHhhhh-ccchHHHHhc-cHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHH
Confidence 3567788888877777777777888888876 4689999998 9999999999999999999999999999999999999
Q ss_pred hhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHH-HHHhcCCC
Q 044293 88 LASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSL-AELVQFHG 166 (236)
Q Consensus 88 i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL-~~L~~~~~ 166 (236)
++..|.+|.++.+|.++ .-..-|...|.++|.+++.|..+.....|+.+.+.+-++......-++.++ .|||....
T Consensus 382 Mv~~GllP~l~~ll~~d---~~~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkR 458 (791)
T KOG1222|consen 382 MVNGGLLPHLASLLDSD---TKHGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKR 458 (791)
T ss_pred HhhccchHHHHHHhCCc---ccchhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccc
Confidence 99999999999999865 333458888999999999999999999999999998876443333333333 46666665
Q ss_pred ChHHHHHhCcHH-------------------------------------HHHHHhcCCChhhHHHHHHHHHHHHcCChhh
Q 044293 167 NSTLAVRAGAVS-------------------------------------ELIHLIGSTEAEDLAGTSLAVLNLLARFDEG 209 (236)
Q Consensus 167 ~~~~~~~~g~i~-------------------------------------~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~ 209 (236)
|.+.+++..++. -|...+...+++...-.|+++|.||...+-.
T Consensus 459 NaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dld 538 (791)
T KOG1222|consen 459 NAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLD 538 (791)
T ss_pred cceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCC
Confidence 554444432222 2333333333345566789999999988877
Q ss_pred HHHHHhcCCcHHHHHHHhhCC
Q 044293 210 MIALTKTDQIVSLMVDVLKGR 230 (236)
Q Consensus 210 ~~~i~~~g~~i~~lv~~l~~~ 230 (236)
..++.+...++|-+=..|+.|
T Consensus 539 w~~ilq~~~LvPw~k~~L~pg 559 (791)
T KOG1222|consen 539 WAKILQSENLVPWMKTQLQPG 559 (791)
T ss_pred HHHHHhhccccHHHHHhhcCC
Confidence 778887777777776666654
No 24
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.39 E-value=3.2e-11 Score=101.53 Aligned_cols=224 Identities=12% Similarity=0.083 Sum_probs=172.4
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCC----C---hHHHHHHHHHHHhhCC
Q 044293 8 ETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSS----S---PIIRTLSLSILLNLSL 80 (236)
Q Consensus 8 ~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~----~---~~~~~~a~~~L~~l~~ 80 (236)
+.++-|.+...+++.++..+..++|.+.|+++.++|..|.+. ||-..++++|++. + .+....+.+.|.|...
T Consensus 87 ~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~l-gGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l 165 (604)
T KOG4500|consen 87 EALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNL-GGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL 165 (604)
T ss_pred HHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhc-CCceehHhhhccccccCCccHHHHHHHHHHHHHHhhC
Confidence 345555666667788899999999999999999999999999 9988888887642 2 3666777889999888
Q ss_pred CCch-hHHhhhcccHHHHHHHHhccC---------------------------------------------CHHHHHHHH
Q 044293 81 NPDL-KQSLASMETIYRLNWIIQSSS---------------------------------------------SQETVKLAS 114 (236)
Q Consensus 81 ~~~~-~~~i~~~g~i~~L~~lL~~~~---------------------------------------------~~~~~~~a~ 114 (236)
+.+. +.++++.|.++.|...+.-+. .++..+-+.
T Consensus 166 ~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~f 245 (604)
T KOG4500|consen 166 DSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIF 245 (604)
T ss_pred CcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHH
Confidence 8765 888889999998776553211 123333344
Q ss_pred HHHHHhcccchhhhhhcccCcHHHHHHhhcC-C-----------------------------------------------
Q 044293 115 SLICSLAMLDKNKARFGVAGTVQVLVKAVSA-P----------------------------------------------- 146 (236)
Q Consensus 115 ~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~-~----------------------------------------------- 146 (236)
..+...+.++..|-.+.+.|.+..++.+++. +
T Consensus 246 eila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~ 325 (604)
T KOG4500|consen 246 EILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFR 325 (604)
T ss_pred HHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhc
Confidence 5566677777777777778888888777764 1
Q ss_pred --CcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCC----ChhhHHHHHHHHHHHHcCChhhHHHHHhcCCcH
Q 044293 147 --SNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGST----EAEDLAGTSLAVLNLLARFDEGMIALTKTDQIV 220 (236)
Q Consensus 147 --~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~----~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~~i 220 (236)
+........-+++|+++.+.++.++++.|.+..|++++... ++-+.+..|+++|+|+..-..+|..+...| +.
T Consensus 326 S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aG-vt 404 (604)
T KOG4500|consen 326 SDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAG-VT 404 (604)
T ss_pred CCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhccccc-hH
Confidence 11133455677889999999999999999999999999641 245678899999999999999999999998 58
Q ss_pred HHHHHHhhCCccc
Q 044293 221 SLMVDVLKGRSMF 233 (236)
Q Consensus 221 ~~lv~~l~~~~~~ 233 (236)
+.++..++..+|+
T Consensus 405 eaIL~~lk~~~pp 417 (604)
T KOG4500|consen 405 EAILLQLKLASPP 417 (604)
T ss_pred HHHHHHHHhcCCc
Confidence 9999999876654
No 25
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.36 E-value=6.9e-12 Score=117.61 Aligned_cols=199 Identities=19% Similarity=0.165 Sum_probs=167.6
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC-hHHHHHHHhccCcHHHHHhh-ccCCChHHHHHHHHHHHhhCCCC-c
Q 044293 7 RETINNCVSRSQSDSYEDQQKALQTLASITRVS-PQYRSLLAQTDGAISTLLGL-SKSSSPIIRTLSLSILLNLSLNP-D 83 (236)
Q Consensus 7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~~g~i~~Lv~l-L~~~~~~~~~~a~~~L~~l~~~~-~ 83 (236)
++.++.+|.-|.+..++...--+..|+||+=.. -..+..+.+. |-+..|... ++..........+.+||||+.|- +
T Consensus 393 rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~-GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcte 471 (2195)
T KOG2122|consen 393 RGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRET-GSVTALAACALRNKKESTLKAVLSALWNLSAHCTE 471 (2195)
T ss_pred hhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhh-hhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccc
Confidence 678999999998777777777778999998553 3457888888 999999876 66666667788999999999985 7
Q ss_pred hhHHhh-hcccHHHHHHHHhcc---CCHHHHHHHHHHHHHhcc----cchhhhhhcccCcHHHHHHhhcCCCcHHHHHHH
Q 044293 84 LKQSLA-SMETIYRLNWIIQSS---SSQETVKLASSLICSLAM----LDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLL 155 (236)
Q Consensus 84 ~~~~i~-~~g~i~~L~~lL~~~---~~~~~~~~a~~~L~~Ls~----~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~ 155 (236)
||..|. -.|++..|+.+|... +...+.+++-++|.|.+. +++.++.+.+.+.+..|+++|++.+--++.++|
T Consensus 472 NKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaC 551 (2195)
T KOG2122|consen 472 NKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNAC 551 (2195)
T ss_pred cchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecch
Confidence 888887 589999999999854 145788899999998654 557788888899999999999999988999999
Q ss_pred HHHHHHhc-CCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCCh
Q 044293 156 SSLAELVQ-FHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFD 207 (236)
Q Consensus 156 ~aL~~L~~-~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~ 207 (236)
.+||||+. +++..+.+++.|+++.|..|+.+. +.-+..-++.+|.||..+.
T Consensus 552 GTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSK-hkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 552 GTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSK-HKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhh-hhhhhhhHHHHHHHHhcCC
Confidence 99999996 678888889999999999999987 4678889999999998765
No 26
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=3.3e-11 Score=102.77 Aligned_cols=215 Identities=13% Similarity=0.118 Sum_probs=171.4
Q ss_pred hHHHhHHHHHHHHhcC---CCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCC
Q 044293 4 PRVRETINNCVSRSQS---DSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSL 80 (236)
Q Consensus 4 ~~~~~~i~~lv~~L~~---~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~ 80 (236)
|..++.|.++-+.++. ..+...+.|+..|.+++.+ -..-..+... .+|..||.-|..++.++.......|..++.
T Consensus 256 etLk~e~dr~~kklk~~~~KQeqLLrva~ylLlNlAed-~~~ElKMrrk-niV~mLVKaLdr~n~~Ll~lv~~FLkKLSI 333 (791)
T KOG1222|consen 256 ETLKEEIDRLNKKLKTAIRKQEQLLRVAVYLLLNLAED-ISVELKMRRK-NIVAMLVKALDRSNSSLLTLVIKFLKKLSI 333 (791)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHH-hHHHHHHHHHcccchHHHHHHHHHHHHhhh
Confidence 4456677777777763 2334556688888999876 3445566665 899999999999888888888999999999
Q ss_pred CCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHH
Q 044293 81 NPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAE 160 (236)
Q Consensus 81 ~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~ 160 (236)
..+||..+.+.|.+..|++++... .++.+......|+|+|.+...+..++..|.+|.|+.++.+++. ...|+..|+.
T Consensus 334 f~eNK~~M~~~~iveKL~klfp~~-h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh 410 (791)
T KOG1222|consen 334 FDENKIVMEQNGIVEKLLKLFPIQ-HPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYH 410 (791)
T ss_pred hccchHHHHhccHHHHHHHhcCCC-CHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCccc--chhhhhhhhh
Confidence 999999999999999999999988 8999999999999999999999999999999999999988753 3567889999
Q ss_pred HhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHH-HHcCChhhHHHHHhcCCcHHHHHH
Q 044293 161 LVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLN-LLARFDEGMIALTKTDQIVSLMVD 225 (236)
Q Consensus 161 L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~-~l~~~~~~~~~i~~~g~~i~~lv~ 225 (236)
++..+..+..+....+|+.+++.+-.+...++ ..++-+++ |+|.+.-+.+.+.+-.| ...|.+
T Consensus 411 ~S~dD~~K~MfayTdci~~lmk~v~~~~~~~v-dl~lia~ciNl~lnkRNaQlvceGqg-L~~LM~ 474 (791)
T KOG1222|consen 411 LSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEV-DLALIALCINLCLNKRNAQLVCEGQG-LDLLME 474 (791)
T ss_pred hccCcHHHHHHHHHHHHHHHHHHHHhcCCcee-cHHHHHHHHHHHhccccceEEecCcc-hHHHHH
Confidence 99999999999999999999987755433333 33333333 77777766666665445 455544
No 27
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.25 E-value=2.1e-09 Score=92.68 Aligned_cols=222 Identities=15% Similarity=0.130 Sum_probs=171.9
Q ss_pred HhHHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCChHHHHHHHhc----cCcHHHHHhhccCCChHHHHHHHHHHHhhCCC
Q 044293 7 RETINNCVSRSQ-SDSYEDQQKALQTLASITRVSPQYRSLLAQT----DGAISTLLGLSKSSSPIIRTLSLSILLNLSLN 81 (236)
Q Consensus 7 ~~~i~~lv~~L~-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~----~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~ 81 (236)
...+..++.+++ .+.++..++.+..+..+...++...+.|.+. ++....++.+|+.++..++..++.+|..+...
T Consensus 52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~ 131 (429)
T cd00256 52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACF 131 (429)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhc
Confidence 456778888886 4567788889999999998877666677664 36788888899988888999999999987654
Q ss_pred Cch-hHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCC--CcHHHHHHHHHH
Q 044293 82 PDL-KQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAP--SNPAGHHLLSSL 158 (236)
Q Consensus 82 ~~~-~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~aL 158 (236)
... .......-..+.+...+++..+.+.+..|+.+|..|...+..|..+.+.++++.|+.+|+.. +.+...+++-++
T Consensus 132 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~l 211 (429)
T cd00256 132 GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCI 211 (429)
T ss_pred CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHH
Confidence 322 11111112445566666654346777888899999999999999999888999999999864 457889999999
Q ss_pred HHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCCh-------hhHHHHHhcCCcHHHHHHHhhCC
Q 044293 159 AELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFD-------EGMIALTKTDQIVSLMVDVLKGR 230 (236)
Q Consensus 159 ~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~-------~~~~~i~~~g~~i~~lv~~l~~~ 230 (236)
+-|+-+++....+.+.+.||.++++++....+.+...++.+|.|+...+ .....++..| +++++..|+.+
T Consensus 212 WlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~--l~~~l~~L~~r 288 (429)
T cd00256 212 WLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCK--VLKTLQSLEQR 288 (429)
T ss_pred HHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcC--hHHHHHHHhcC
Confidence 9999998877777788999999999998766678889999999998743 3455677765 47777777653
No 28
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=99.24 E-value=1.7e-10 Score=82.71 Aligned_cols=132 Identities=15% Similarity=0.175 Sum_probs=114.8
Q ss_pred HHhHHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCch
Q 044293 6 VRETINNCVSRSQ-SDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDL 84 (236)
Q Consensus 6 ~~~~i~~lv~~L~-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~ 84 (236)
..+.++.||+..+ ..+.+.+++.+.-|.+++.+ |.|...+.+. ++++.+++-|..++..+.+.+++.|+|+|.++.|
T Consensus 14 Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAYD-P~Nys~Lrql-~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n 91 (173)
T KOG4646|consen 14 RLEYLQHLVDEFQTTTNIEAKEQVTANLANFAYD-PINYSHLRQL-DVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTN 91 (173)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccC-cchHHHHHHh-hHHHHHHHHhhcccHHHHHHhHHHHHhhccChHH
Confidence 3678899999996 46788899999999999997 8999999999 9999999999999999999999999999999999
Q ss_pred hHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccc-hhhhhhcccCcHHHHH
Q 044293 85 KQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLD-KNKARFGVAGTVQVLV 140 (236)
Q Consensus 85 ~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv 140 (236)
+.-|.+.+++|.++..+.+. ...+...|+.++..|+... ..+..+.....+..+.
T Consensus 92 ~~~I~ea~g~plii~~lssp-~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~ 147 (173)
T KOG4646|consen 92 AKFIREALGLPLIIFVLSSP-PEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQ 147 (173)
T ss_pred HHHHHHhcCCceEEeecCCC-hHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHH
Confidence 99999999999999999988 7889999999999999865 4566665544443333
No 29
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=2.5e-09 Score=95.92 Aligned_cols=216 Identities=19% Similarity=0.244 Sum_probs=174.6
Q ss_pred HHhHHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCC--ChHHHHHHHHHHHhhCCCC
Q 044293 6 VRETINNCVSRSQSDS-YEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSS--SPIIRTLSLSILLNLSLNP 82 (236)
Q Consensus 6 ~~~~i~~lv~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~l~~~~ 82 (236)
.-++|+.|++++.+.. .+.|+.|+..|..+++. +|..++.+ |+++|++.|..+ |+++..-++..++++..++
T Consensus 20 ~aETI~kLcDRvessTL~eDRR~A~rgLKa~srk---YR~~Vga~--Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~d 94 (970)
T KOG0946|consen 20 AAETIEKLCDRVESSTLLEDRRDAVRGLKAFSRK---YREEVGAQ--GMKPLIQVLQRDYMDPEIIKYALDTLLILTSHD 94 (970)
T ss_pred HHhHHHHHHHHHhhccchhhHHHHHHHHHHHHHH---HHHHHHHc--ccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcC
Confidence 3579999999997654 77899999999999874 78888876 699999999764 7899999999999987776
Q ss_pred c------h-hH----------H-hhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccc--hhhhhhcc-cCcHHHHHH
Q 044293 83 D------L-KQ----------S-LASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLD--KNKARFGV-AGTVQVLVK 141 (236)
Q Consensus 83 ~------~-~~----------~-i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~--~~~~~i~~-~g~i~~Lv~ 141 (236)
+ + +. . |...+.|..++..+... |.-+|..+.-.|.++-.+. +.+..+.. .-+|..|+.
T Consensus 95 d~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~-DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmd 173 (970)
T KOG0946|consen 95 DSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEF-DFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMD 173 (970)
T ss_pred cchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhh-chhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHH
Confidence 3 2 31 1 33678999999999988 8899999999999886554 55555554 889999999
Q ss_pred hhcCCCcHHHHHHHHHHHHHhcCCCChHHHH-HhCcHHHHHHHhcCC---ChhhHHHHHHHHHHHHcCCh-hhHHHHHhc
Q 044293 142 AVSAPSNPAGHHLLSSLAELVQFHGNSTLAV-RAGAVSELIHLIGST---EAEDLAGTSLAVLNLLARFD-EGMIALTKT 216 (236)
Q Consensus 142 lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~-~~g~i~~lv~ll~~~---~~~~~~~~a~~~L~~l~~~~-~~~~~i~~~ 216 (236)
+|++...+++..++-.|..|+......+.++ -.+++..|.+++... +..-+.+.|+..|.||..+. .++.-|.+.
T Consensus 174 lL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~ 253 (970)
T KOG0946|consen 174 LLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREG 253 (970)
T ss_pred HHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhcc
Confidence 9998888899999999999999877766665 489999999999753 22357799999999999754 677667665
Q ss_pred CCcHHHHHHHhh
Q 044293 217 DQIVSLMVDVLK 228 (236)
Q Consensus 217 g~~i~~lv~~l~ 228 (236)
+ -||.|.++|.
T Consensus 254 ~-~i~rL~klL~ 264 (970)
T KOG0946|consen 254 S-YIPRLLKLLS 264 (970)
T ss_pred c-cHHHHHhhcC
Confidence 5 5899998775
No 30
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=4e-09 Score=87.43 Aligned_cols=184 Identities=22% Similarity=0.209 Sum_probs=146.3
Q ss_pred CCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCC-chhHHhhhcccHHHH
Q 044293 19 SDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNP-DLKQSLASMETIYRL 97 (236)
Q Consensus 19 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~-~~~~~i~~~g~i~~L 97 (236)
+.+.+.+..|+..|..++.+ -+|..-+... ||..+++.++.+.+..+|+.|+++|..++.+. ..+..+.+.|+++.|
T Consensus 94 s~~le~ke~ald~Le~lve~-iDnAndl~~~-ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~L 171 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVED-IDNANDLISL-GGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKL 171 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHh-hhhHHhHhhc-cCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHH
Confidence 45677888999999999986 6788899998 99999999999999999999999999887764 568888899999999
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhcccc-hhhhhhcccCcHHHHHHhhcCC--CcHHHHHHHHHHHHHhcCC-CChHHHHH
Q 044293 98 NWIIQSSSSQETVKLASSLICSLAMLD-KNKARFGVAGTVQVLVKAVSAP--SNPAGHHLLSSLAELVQFH-GNSTLAVR 173 (236)
Q Consensus 98 ~~lL~~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~aL~~L~~~~-~~~~~~~~ 173 (236)
+..|.++.+..++..|..+++.|-.+. ....++...++...|...+.++ +...+..++-.+.+|.... ..+..+..
T Consensus 172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~ 251 (342)
T KOG2160|consen 172 LKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASS 251 (342)
T ss_pred HHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 999998756778899999999998865 4556677788899999999995 5567788888888888754 34443444
Q ss_pred hCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC
Q 044293 174 AGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR 205 (236)
Q Consensus 174 ~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~ 205 (236)
.|....+..+....+ .++.+.++.++..+..
T Consensus 252 ~~f~~~~~~l~~~l~-~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 252 LGFQRVLENLISSLD-FEVNEAALTALLSLLS 282 (342)
T ss_pred hhhhHHHHHHhhccc-hhhhHHHHHHHHHHHH
Confidence 555555666665553 5677777777666544
No 31
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.14 E-value=1.8e-09 Score=90.79 Aligned_cols=185 Identities=19% Similarity=0.138 Sum_probs=139.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccC----CChHHHHHHHHHHHhhCCCCch
Q 044293 9 TINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKS----SSPIIRTLSLSILLNLSLNPDL 84 (236)
Q Consensus 9 ~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~----~~~~~~~~a~~~L~~l~~~~~~ 84 (236)
-...++.++.++|.-++..|+..|..+...++....... . +.++.+++++++ ++.+.+..++.+|.++...+..
T Consensus 106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~-~-~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~ 183 (312)
T PF03224_consen 106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLV-K-EALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEY 183 (312)
T ss_dssp -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHH-H-HHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchH-H-HHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchh
Confidence 456677788889999999999999999887554433322 3 578888887765 3456678899999999999999
Q ss_pred hHHhhhcccHHHHHHHH------hccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCC-CcHHHHHHHHH
Q 044293 85 KQSLASMETIYRLNWII------QSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAP-SNPAGHHLLSS 157 (236)
Q Consensus 85 ~~~i~~~g~i~~L~~lL------~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~a 157 (236)
|..+.+.|+++.+..++ .+..+.+++=+++-++|-||.+++....+...+.|+.|+++++.. ...+.+-++.+
T Consensus 184 R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~ 263 (312)
T PF03224_consen 184 RQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAI 263 (312)
T ss_dssp HHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHH
Confidence 99999999999999999 222246677789999999999999999998888999999999864 56788999999
Q ss_pred HHHHhcCCC--ChHHHHHhCcHHHHHHHhcCC-ChhhHHHH
Q 044293 158 LAELVQFHG--NSTLAVRAGAVSELIHLIGST-EAEDLAGT 195 (236)
Q Consensus 158 L~~L~~~~~--~~~~~~~~g~i~~lv~ll~~~-~~~~~~~~ 195 (236)
|.||..... +...|+..|+++.+-.|.... +++++.+.
T Consensus 264 l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~ed 304 (312)
T PF03224_consen 264 LRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSDEDLTED 304 (312)
T ss_dssp HHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHHH
Confidence 999998765 778888888877777666542 23666543
No 32
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.10 E-value=3.3e-09 Score=89.61 Aligned_cols=215 Identities=15% Similarity=0.081 Sum_probs=160.3
Q ss_pred HHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccC-CCh-------HHHHHHHHHHHhhC
Q 044293 9 TINNCVSRSQS-DSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKS-SSP-------IIRTLSLSILLNLS 79 (236)
Q Consensus 9 ~i~~lv~~L~~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~-~~~-------~~~~~a~~~L~~l~ 79 (236)
....++++|.+ -+++.+....+.+...+.+ +..+-.+++. |.++.+++++++ ++- .....++....-+.
T Consensus 224 l~~~l~~ll~~~v~~d~~eM~feila~~aen-d~Vkl~la~~-gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vlll 301 (604)
T KOG4500|consen 224 LVFMLLQLLPSMVREDIDEMIFEILAKAAEN-DLVKLSLAQN-GLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLL 301 (604)
T ss_pred HHHHHHHHHHHhhccchhhHHHHHHHHHhcC-cceeeehhhc-chHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhh
Confidence 34556666653 3556677777788888775 5678889998 999999999876 221 22334555555566
Q ss_pred CCCchhHHhhhcc-cHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcC-----CCcHHHHH
Q 044293 80 LNPDLKQSLASME-TIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSA-----PSNPAGHH 153 (236)
Q Consensus 80 ~~~~~~~~i~~~g-~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~-----~~~~~~~~ 153 (236)
..++.-+.+...| ++..+.+.+.+. |.+....++-+|.|+++.++++.++++.|++..|++.|.. +|...+..
T Consensus 302 tGDeSMq~L~~~p~~l~~~~sw~~S~-d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA 380 (604)
T KOG4500|consen 302 TGDESMQKLHADPQFLDFLESWFRSD-DSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHA 380 (604)
T ss_pred cCchHHHHHhcCcHHHHHHHHHhcCC-chhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHH
Confidence 6666656665544 899999999988 8899999999999999999999999999999999999965 46678889
Q ss_pred HHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChh-hHHHHHhcCCcHHHHHHHhhCCc
Q 044293 154 LLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDE-GMIALTKTDQIVSLMVDVLKGRS 231 (236)
Q Consensus 154 a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~-~~~~i~~~g~~i~~lv~~l~~~~ 231 (236)
++.+|+||.....||..+..+|+...++..++... |.++..-+.+|..+....+ ...++.. -+.+++-|..|+
T Consensus 381 ~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~-ppv~fkllgTlrM~~d~qe~~a~eL~k----n~~l~ekLv~Ws 454 (604)
T KOG4500|consen 381 CLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLAS-PPVTFKLLGTLRMIRDSQEYIACELAK----NPELFEKLVDWS 454 (604)
T ss_pred HHHHHHhccccCCchhhccccchHHHHHHHHHhcC-CcchHHHHHHHHHHHhchHHHHHHHhc----CHHHHHHHHHhh
Confidence 99999999999999999999999999999998763 5566666666665543332 3344433 244444444443
No 33
>PRK09687 putative lyase; Provisional
Probab=99.03 E-value=2e-08 Score=82.95 Aligned_cols=29 Identities=10% Similarity=0.216 Sum_probs=17.9
Q ss_pred cCcHHHHHHhhcCCCcHHHHHHHHHHHHH
Q 044293 133 AGTVQVLVKAVSAPSNPAGHHLLSSLAEL 161 (236)
Q Consensus 133 ~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L 161 (236)
..+++.|+.+|.+.++.++..|+.+|..+
T Consensus 158 ~~ai~~L~~~L~d~~~~VR~~A~~aLg~~ 186 (280)
T PRK09687 158 EAAIPLLINLLKDPNGDVRNWAAFALNSN 186 (280)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHhcC
Confidence 34566666666666666666666666655
No 34
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=1.5e-08 Score=91.57 Aligned_cols=213 Identities=13% Similarity=0.076 Sum_probs=163.5
Q ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHH-HhcCChHHHHHHHhccCcHHHHHhhccCC-ChHHHHHHHHHHHhhCCC-Cch
Q 044293 9 TINNCVSRSQSD-SYEDQQKALQTLAS-ITRVSPQYRSLLAQTDGAISTLLGLSKSS-SPIIRTLSLSILLNLSLN-PDL 84 (236)
Q Consensus 9 ~i~~lv~~L~~~-~~~~~~~a~~~L~~-l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~-~~~ 84 (236)
-+..|++=|+.. ++..|.+|+..|.. +...+++.-.-|-- +-.||.|+.+|++. +.+++-.|+++|.+|+.. |..
T Consensus 168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv-~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S 246 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPV-KSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRS 246 (1051)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccH-HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccch
Confidence 456677777654 78888888877754 44445544333332 26999999999875 689999999999998875 667
Q ss_pred hHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcC
Q 044293 85 KQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQF 164 (236)
Q Consensus 85 ~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~ 164 (236)
...+++.+.||.|+..|..-...++-++++.+|..++..+ -..+.++|++-..+.++.=-+..+++.|+.+..|+|..
T Consensus 247 ~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H--~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cks 324 (1051)
T KOG0168|consen 247 SAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH--PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKS 324 (1051)
T ss_pred hheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc--cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7888899999999998887657899999999999999976 34566789999999999777777899999999999973
Q ss_pred --CCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHH----cCChhhHHHHHhcCCcHHHHHHHhh
Q 044293 165 --HGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLL----ARFDEGMIALTKTDQIVSLMVDVLK 228 (236)
Q Consensus 165 --~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l----~~~~~~~~~i~~~g~~i~~lv~~l~ 228 (236)
++.-..+ ..++|.|-.+|+..+ .+..+.++-++.-+ ...++--+++..+| +|.....++.
T Consensus 325 i~sd~f~~v--~ealPlL~~lLs~~D-~k~ies~~ic~~ri~d~f~h~~~kLdql~s~d-Li~~~~qLls 390 (1051)
T KOG0168|consen 325 IRSDEFHFV--MEALPLLTPLLSYQD-KKPIESVCICLTRIADGFQHGPDKLDQLCSHD-LITNIQQLLS 390 (1051)
T ss_pred CCCccchHH--HHHHHHHHHHHhhcc-chhHHHHHHHHHHHHHhcccChHHHHHHhchh-HHHHHHHHHh
Confidence 4555554 368999999998875 44556555555544 34677888888887 6888877664
No 35
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=2.1e-08 Score=90.64 Aligned_cols=218 Identities=14% Similarity=0.119 Sum_probs=175.7
Q ss_pred HHhHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccC-CChHHHHHHHHHHHhhCCCCc
Q 044293 6 VRETINNCVSRSQS-DSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKS-SSPIIRTLSLSILLNLSLNPD 83 (236)
Q Consensus 6 ~~~~i~~lv~~L~~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~ 83 (236)
+...||.|+.+|+. .+.+++-.|+++|.+|+.--|.....+++. ++||.|+.-|.. .-.++-+.++.+|--++..
T Consensus 209 v~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~-~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~-- 285 (1051)
T KOG0168|consen 209 VKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDE-HAIPVLLEKLLTIEYIDVAEQSLQALEKISRR-- 285 (1051)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecc-cchHHHHHhhhhhhhhHHHHHHHHHHHHHHhh--
Confidence 46689999999985 469999999999999999888888888987 999999977654 4568889999999988874
Q ss_pred hhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccc---hhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHH
Q 044293 84 LKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLD---KNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAE 160 (236)
Q Consensus 84 ~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~---~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~ 160 (236)
.-..|.+.|+|...+..|+-. +..+++.|..+-.|+|..- +..- + ..++|.|..+|+..+....+.++.++..
T Consensus 286 H~~AiL~AG~l~a~LsylDFF-Si~aQR~AlaiaaN~Cksi~sd~f~~-v--~ealPlL~~lLs~~D~k~ies~~ic~~r 361 (1051)
T KOG0168|consen 286 HPKAILQAGALSAVLSYLDFF-SIHAQRVALAIAANCCKSIRSDEFHF-V--MEALPLLTPLLSYQDKKPIESVCICLTR 361 (1051)
T ss_pred ccHHHHhcccHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCccchH-H--HHHHHHHHHHHhhccchhHHHHHHHHHH
Confidence 335677899999999999877 7889999999999998742 2221 1 4679999999999988999999999988
Q ss_pred Hhc---CC-CChHHHHHhCcHHHHHHHhcCCC---hhhHHHHHHHHHHHHcCC-hhhHHHHHhcCCcHHHHHHHhhCCc
Q 044293 161 LVQ---FH-GNSTLAVRAGAVSELIHLIGSTE---AEDLAGTSLAVLNLLARF-DEGMIALTKTDQIVSLMVDVLKGRS 231 (236)
Q Consensus 161 L~~---~~-~~~~~~~~~g~i~~lv~ll~~~~---~~~~~~~a~~~L~~l~~~-~~~~~~i~~~g~~i~~lv~~l~~~~ 231 (236)
+.. +. +--++++..|.|....+|+...+ ...+....+++|.-||.+ +..+....+.+ |...|-++|..-+
T Consensus 362 i~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~-I~~~L~~il~g~s 439 (1051)
T KOG0168|consen 362 IADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLD-IADTLKRILQGYS 439 (1051)
T ss_pred HHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhh-HHHHHHHHHhccC
Confidence 875 22 33456788899999999997652 234556788888888876 89999999987 6778888887543
No 36
>PRK09687 putative lyase; Provisional
Probab=98.94 E-value=8.2e-08 Score=79.35 Aligned_cols=165 Identities=14% Similarity=0.067 Sum_probs=120.5
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhH
Q 044293 7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQ 86 (236)
Q Consensus 7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~ 86 (236)
.-.++.|...|.+++..++..+++.|..+-. . .+++.+..++.++++.+|..++++|..+...+..
T Consensus 22 ~~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~-~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-- 87 (280)
T PRK09687 22 KLNDDELFRLLDDHNSLKRISSIRVLQLRGG-----------Q-DVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-- 87 (280)
T ss_pred hccHHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------c-hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc--
Confidence 3468889999999999999999999886632 2 5677888889999999999999999998654332
Q ss_pred HhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCC
Q 044293 87 SLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHG 166 (236)
Q Consensus 87 ~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~ 166 (236)
....++.|..++..+.++.++..|+.+|.+++...... ...+++.+...+.+++..++..++.+|..+..
T Consensus 88 ---~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--- 157 (280)
T PRK09687 88 ---QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND--- 157 (280)
T ss_pred ---hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC---
Confidence 22456777777444438999999999999986533211 23456778888888888999999999865431
Q ss_pred ChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHH
Q 044293 167 NSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLL 203 (236)
Q Consensus 167 ~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l 203 (236)
..+++.|+.++.+.+ ..++..|+.+|..+
T Consensus 158 -------~~ai~~L~~~L~d~~-~~VR~~A~~aLg~~ 186 (280)
T PRK09687 158 -------EAAIPLLINLLKDPN-GDVRNWAAFALNSN 186 (280)
T ss_pred -------HHHHHHHHHHhcCCC-HHHHHHHHHHHhcC
Confidence 235666677776653 45666666666655
No 37
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.91 E-value=1.4e-08 Score=72.97 Aligned_cols=122 Identities=12% Similarity=0.088 Sum_probs=106.9
Q ss_pred CcHHHHHhhcc-CCChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhh
Q 044293 51 GAISTLLGLSK-SSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKAR 129 (236)
Q Consensus 51 g~i~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~ 129 (236)
+.+..||.-.. ..+.+.++....-|+|++.+|-|-..+.+.+.+..+++.|... ++..++.+.+.|+|+|.++.|++.
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~-ne~LvefgIgglCNlC~d~~n~~~ 94 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQ-NELLVEFGIGGLCNLCLDKTNAKF 94 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcc-cHHHHHHhHHHHHhhccChHHHHH
Confidence 45666665544 4578899999999999999999999999999999999999988 899999999999999999999999
Q ss_pred hcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCC-ChHHHHH
Q 044293 130 FGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHG-NSTLAVR 173 (236)
Q Consensus 130 i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~-~~~~~~~ 173 (236)
|.+++++|.++..+.++...+...++.++..|+.... .+..+..
T Consensus 95 I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~ 139 (173)
T KOG4646|consen 95 IREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLS 139 (173)
T ss_pred HHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhcc
Confidence 9999999999999999988889999999999998653 4555544
No 38
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.91 E-value=2.7e-07 Score=79.88 Aligned_cols=220 Identities=15% Similarity=0.177 Sum_probs=153.8
Q ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCC--ChHHHHHHHHHHHhhCCCCchh
Q 044293 9 TINNCVSRSQSD-SYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSS--SPIIRTLSLSILLNLSLNPDLK 85 (236)
Q Consensus 9 ~i~~lv~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~l~~~~~~~ 85 (236)
....+...|+++ +.+.+.-|+.+|..+... ++.|..|.+. ++++.|+.+|+.. +...+-.++-+++-++.+++..
T Consensus 144 ~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~-~~~R~~f~~~-~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~ 221 (429)
T cd00256 144 YFNWLKEQLNNITNNDYVQTAARCLQMLLRV-DEYRFAFVLA-DGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAA 221 (429)
T ss_pred HHHHHHHHhhccCCcchHHHHHHHHHHHhCC-chHHHHHHHc-cCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHH
Confidence 334555556543 355666688899999887 6789999998 8999999999763 4577889999999999998876
Q ss_pred HHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccc-------hhhhhhcccCcHHHHHHhhcCC--CcHHHHHHHH
Q 044293 86 QSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLD-------KNKARFGVAGTVQVLVKAVSAP--SNPAGHHLLS 156 (236)
Q Consensus 86 ~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~-------~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~ 156 (236)
......+.|+.++++++....+.+.+-+..+|.||.... .....+...| ++++++.|... +++.....+.
T Consensus 222 ~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~-l~~~l~~L~~rk~~DedL~edl~ 300 (429)
T cd00256 222 EVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCK-VLKTLQSLEQRKYDDEDLTDDLK 300 (429)
T ss_pred HhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcC-hHHHHHHHhcCCCCcHHHHHHHH
Confidence 777788999999999998756788899999999998743 2233444555 46666666543 3332222222
Q ss_pred HHH--------HHhc------------------------CCCChHHHHHh--CcHHHHHHHhcCCChhhHHHHHHHHHHH
Q 044293 157 SLA--------ELVQ------------------------FHGNSTLAVRA--GAVSELIHLIGSTEAEDLAGTSLAVLNL 202 (236)
Q Consensus 157 aL~--------~L~~------------------------~~~~~~~~~~~--g~i~~lv~ll~~~~~~~~~~~a~~~L~~ 202 (236)
.|. .+++ +.+|...+-+. .++..|+++|..++++.+..-|+.=+..
T Consensus 301 ~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige 380 (429)
T cd00256 301 FLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGE 380 (429)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHH
Confidence 222 1221 11244444443 3567899999655446666667777777
Q ss_pred HcC-ChhhHHHHHhcCCcHHHHHHHhhCCcc
Q 044293 203 LAR-FDEGMIALTKTDQIVSLMVDVLKGRSM 232 (236)
Q Consensus 203 l~~-~~~~~~~i~~~g~~i~~lv~~l~~~~~ 232 (236)
+++ +|.+|..+-+.|| =..+.+++.+.++
T Consensus 381 ~vr~~P~gr~i~~~lg~-K~~vM~Lm~h~d~ 410 (429)
T cd00256 381 YVRHYPRGKDVVEQLGG-KQRVMRLLNHEDP 410 (429)
T ss_pred HHHHCccHHHHHHHcCc-HHHHHHHhcCCCH
Confidence 774 6899999999987 5777778887664
No 39
>PF05536 Neurochondrin: Neurochondrin
Probab=98.78 E-value=6.1e-07 Score=80.59 Aligned_cols=157 Identities=19% Similarity=0.183 Sum_probs=128.6
Q ss_pred HHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChH---HHHHHHhccCcHHHHHhhccCC-------ChHHHHHHHHHH
Q 044293 6 VRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQ---YRSLLAQTDGAISTLLGLSKSS-------SPIIRTLSLSIL 75 (236)
Q Consensus 6 ~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~---~~~~i~~~~g~i~~Lv~lL~~~-------~~~~~~~a~~~L 75 (236)
..+.+.+++.+|+..+.+.+..++..+.++...++. .++.+.++ =+.+.|-+||+++ ....+.-|+.+|
T Consensus 3 ~~~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~a-ig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL 81 (543)
T PF05536_consen 3 QSASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEA-IGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVL 81 (543)
T ss_pred chHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHh-cChhHHHHHhcCCCCCCCCCHHHHHHHHHHHH
Confidence 357899999999988877888899999999987653 34567787 6688888999873 356788999999
Q ss_pred HhhCCCCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHH
Q 044293 76 LNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLL 155 (236)
Q Consensus 76 ~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~ 155 (236)
..+|.+|+....-.--+-||.|+..+.++.+.++...|..+|..++..++.+..+.+.|+++.|.+.+.+ ++...+.|+
T Consensus 82 ~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al 160 (543)
T PF05536_consen 82 AAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIAL 160 (543)
T ss_pred HHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHH
Confidence 9999988764322224679999999988733499999999999999999999999999999999999988 446678889
Q ss_pred HHHHHHhcC
Q 044293 156 SSLAELVQF 164 (236)
Q Consensus 156 ~aL~~L~~~ 164 (236)
..+.+++..
T Consensus 161 ~lL~~Lls~ 169 (543)
T PF05536_consen 161 NLLLNLLSR 169 (543)
T ss_pred HHHHHHHHh
Confidence 998888764
No 40
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=7.8e-07 Score=73.97 Aligned_cols=155 Identities=20% Similarity=0.212 Sum_probs=125.2
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCCh-HHHHHHHHHHHhhCCCC-chh
Q 044293 8 ETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSP-IIRTLSLSILLNLSLNP-DLK 85 (236)
Q Consensus 8 ~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~-~~~~~a~~~L~~l~~~~-~~~ 85 (236)
++...++..++++++.+|..|++.|...+.+||..++.+.+. |+.+.|+..|+++++ .++.+|+.++..+-.+. .+.
T Consensus 124 ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~-~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~ 202 (342)
T KOG2160|consen 124 GGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIEL-GALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQ 202 (342)
T ss_pred cCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHc-ccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHH
Confidence 456667778999999999999999999999999999999998 999999999987655 56789999999887764 567
Q ss_pred HHhhhcccHHHHHHHHhcc-CCHHHHHHHHHHHHHhcccch-hhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhc
Q 044293 86 QSLASMETIYRLNWIIQSS-SSQETVKLASSLICSLAMLDK-NKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQ 163 (236)
Q Consensus 86 ~~i~~~g~i~~L~~lL~~~-~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~ 163 (236)
..+...+|...|...++++ .+...+..++..+.++...+. .+..+...|+-..+..+....+.+..+.+++++..+..
T Consensus 203 ~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 203 DEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred HHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 8888888899999999985 267788889999998876553 33433346777777777777777888888888765554
No 41
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.71 E-value=1e-06 Score=71.80 Aligned_cols=209 Identities=19% Similarity=0.171 Sum_probs=149.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhh
Q 044293 10 INNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLA 89 (236)
Q Consensus 10 i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~ 89 (236)
...+++++.+.+|.++..|+..+..++.. ..+..+....-.++.+.+++....+ -+.|+.+|.|++.++..+..+.
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll 80 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLL 80 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHH
Confidence 45789999999999999999999888876 3333333223567778888877666 5678899999999999888887
Q ss_pred hcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcc--c----CcHHHHHH-hhcCCCc--HHHHHHHHHHHH
Q 044293 90 SMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGV--A----GTVQVLVK-AVSAPSN--PAGHHLLSSLAE 160 (236)
Q Consensus 90 ~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~--~----g~i~~Lv~-lL~~~~~--~~~~~a~~aL~~ 160 (236)
+. ++..+++.+... ....-...+.+|.||+.+++....+.. . .++..++. ....+.. .-..+.+-.+.|
T Consensus 81 ~~-~~k~l~~~~~~p-~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~n 158 (353)
T KOG2973|consen 81 QD-LLKVLMDMLTDP-QSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFAN 158 (353)
T ss_pred HH-HHHHHHHHhcCc-ccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHH
Confidence 66 999999998865 345566678889999999876554431 1 34444444 4443322 334677788999
Q ss_pred HhcCCCChHHHHHhCcHHHHH-HHhcCCChhhH-HHHHHHHHHHHcCChhhHHHHHhcCCcHHHHHHHh
Q 044293 161 LVQFHGNSTLAVRAGAVSELI-HLIGSTEAEDL-AGTSLAVLNLLARFDEGMIALTKTDQIVSLMVDVL 227 (236)
Q Consensus 161 L~~~~~~~~~~~~~g~i~~lv-~ll~~~~~~~~-~~~a~~~L~~l~~~~~~~~~i~~~g~~i~~lv~~l 227 (236)
+++.+.+|+.+.+...+|.-. -.+...+ ..+ +...+++|.|.|.+....+.+... + +..+.-+|
T Consensus 159 ls~~~~gR~l~~~~k~~p~~kll~ft~~~-s~vRr~GvagtlkN~cFd~~~h~~lL~e-~-~~lLp~iL 224 (353)
T KOG2973|consen 159 LSQFEAGRKLLLEPKRFPDQKLLPFTSED-SQVRRGGVAGTLKNCCFDAKLHEVLLDE-S-INLLPAIL 224 (353)
T ss_pred HhhhhhhhhHhcchhhhhHhhhhcccccc-hhhhccchHHHHHhhhccchhHHHHhcc-h-HHHHHHHH
Confidence 999999999998877555422 2222322 334 367999999999999888888884 4 45555544
No 42
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.70 E-value=1.1e-06 Score=77.81 Aligned_cols=163 Identities=15% Similarity=0.133 Sum_probs=120.4
Q ss_pred HHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCch-hHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHh
Q 044293 42 YRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDL-KQSLASMETIYRLNWIIQSSSSQETVKLASSLICSL 120 (236)
Q Consensus 42 ~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~-~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~L 120 (236)
++..+-+. -....+.......|...+..++..+.+++..-.. +..+...+++.++++++..+ +.-++..+.++|+|+
T Consensus 369 ~~k~~l~~-~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp-~~~i~~~~lgai~Nl 446 (678)
T KOG1293|consen 369 LKKEILET-TTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDP-EIMIMGITLGAICNL 446 (678)
T ss_pred HHHHHHHH-HHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCc-chhHHHHHHHHHHHH
Confidence 44444443 2233333334455677777777777777664332 44566788999999999877 677888899999999
Q ss_pred cccc-hhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCCChHHHH-HhCc-HHHHHHHhcCCChhhHHHHHH
Q 044293 121 AMLD-KNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAV-RAGA-VSELIHLIGSTEAEDLAGTSL 197 (236)
Q Consensus 121 s~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~-~~g~-i~~lv~ll~~~~~~~~~~~a~ 197 (236)
...- ..|..+.+.|+|..+.+++.+.++.++..++|+|+++.-..++..... -... ...++.+.++.+ .+++++|.
T Consensus 447 Vmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d-~~Vqeq~f 525 (678)
T KOG1293|consen 447 VMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPD-WAVQEQCF 525 (678)
T ss_pred HhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCC-HHHHHHHH
Confidence 7654 678888899999999999999999999999999999998766544432 2333 334667777775 78999999
Q ss_pred HHHHHHcCCh
Q 044293 198 AVLNLLARFD 207 (236)
Q Consensus 198 ~~L~~l~~~~ 207 (236)
..|+|+..+.
T Consensus 526 qllRNl~c~~ 535 (678)
T KOG1293|consen 526 QLLRNLTCNS 535 (678)
T ss_pred HHHHHhhcCc
Confidence 9999998764
No 43
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=2.9e-06 Score=79.49 Aligned_cols=205 Identities=12% Similarity=0.105 Sum_probs=141.3
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCC-chh
Q 044293 7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNP-DLK 85 (236)
Q Consensus 7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~-~~~ 85 (236)
+...+.+-.+|++.++..|..++.+|...+.+..+.-.... +.+++..+..|+.++|.+|-.|+.++.+++.+= ..-
T Consensus 347 p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l--~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~i 424 (1075)
T KOG2171|consen 347 PPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL--PKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEI 424 (1075)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH--HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHH
Confidence 34556667788899999999999999999988554433333 467888889999999999999999999999873 223
Q ss_pred HHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcc--cCcHHHHHH-hhcCCCcHHHHHHHHHHHHHh
Q 044293 86 QSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGV--AGTVQVLVK-AVSAPSNPAGHHLLSSLAELV 162 (236)
Q Consensus 86 ~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~--~g~i~~Lv~-lL~~~~~~~~~~a~~aL~~L~ 162 (236)
+.-...-.++.|+..+++..++.++.+|+.++.|++.... +..+.- .+.+.+++. +++++++.+++.++.+|+..+
T Consensus 425 qk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~-~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA 503 (1075)
T KOG2171|consen 425 QKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECD-KSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVA 503 (1075)
T ss_pred HHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 3333445778899999887688999999999999988654 344432 466663443 445677889999999998888
Q ss_pred cCCCChHHHHHhCcHHHHHHHhcCCChhhH---HHHHHHHHHHHcCChhhHHHHHh
Q 044293 163 QFHGNSTLAVRAGAVSELIHLIGSTEAEDL---AGTSLAVLNLLARFDEGMIALTK 215 (236)
Q Consensus 163 ~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~---~~~a~~~L~~l~~~~~~~~~i~~ 215 (236)
..-+..=.=.-...+|.|.+.|...+..+. +-.++.++.-+ ...-+|++|..
T Consensus 504 ~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli-~~AVGke~F~~ 558 (1075)
T KOG2171|consen 504 DAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLI-ARAVGKEKFLP 558 (1075)
T ss_pred HHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHH-HHHhhhhhhhH
Confidence 643332221224678999999977543333 33444444322 22344555543
No 44
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.58 E-value=9e-06 Score=68.92 Aligned_cols=219 Identities=15% Similarity=0.135 Sum_probs=162.7
Q ss_pred hHHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCChHHHHHHHhc------cCcHHHHHhhccCCChHHHHHHHHHHHhhCC
Q 044293 8 ETINNCVSRSQSDS-YEDQQKALQTLASITRVSPQYRSLLAQT------DGAISTLLGLSKSSSPIIRTLSLSILLNLSL 80 (236)
Q Consensus 8 ~~i~~lv~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~i~~~------~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~ 80 (236)
+.+..++.+++..+ ++.....+..+-.+..++.. +..+.+. .-.-+..+++|..++.-+.+.+.+++..++.
T Consensus 65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~s-r~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~ 143 (442)
T KOG2759|consen 65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRS-RVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLAC 143 (442)
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCch-HHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence 56777888887543 55666677777766655432 2222111 1336778888888888888888888888877
Q ss_pred CCchhHHhhhc-ccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcC--CCcHHHHHHHHH
Q 044293 81 NPDLKQSLASM-ETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSA--PSNPAGHHLLSS 157 (236)
Q Consensus 81 ~~~~~~~i~~~-g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~~~~~a~~a 157 (236)
....+....+. =....|-+.++++.+.+....|+++|-.+...++.|-.+....++..++..+.+ .+...+...+-|
T Consensus 144 ~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifc 223 (442)
T KOG2759|consen 144 FGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFC 223 (442)
T ss_pred hccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHHH
Confidence 65443322211 133455566666557888899999999999999999999999999999999943 467888999999
Q ss_pred HHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCCh-------hhHHHHHhcCCcHHHHHHHhhC
Q 044293 158 LAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFD-------EGMIALTKTDQIVSLMVDVLKG 229 (236)
Q Consensus 158 L~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~-------~~~~~i~~~g~~i~~lv~~l~~ 229 (236)
++-|+-++...+.+-..+.|+.|.++++.+..+.+..-++.++.|+.... +...+++.++ +++-++.|+.
T Consensus 224 iWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~--v~k~l~~L~~ 300 (442)
T KOG2759|consen 224 IWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCK--VLKTLQSLEE 300 (442)
T ss_pred HHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcC--chHHHHHHHh
Confidence 99999999888888778999999999988755678889999999998655 4556788875 4777777754
No 45
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.58 E-value=1.3e-05 Score=76.63 Aligned_cols=181 Identities=14% Similarity=0.085 Sum_probs=93.2
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--------------ChHHHHHHHhc-----cCcHHHHHhhccCCChHH
Q 044293 7 RETINNCVSRSQSDSYEDQQKALQTLASITRV--------------SPQYRSLLAQT-----DGAISTLLGLSKSSSPII 67 (236)
Q Consensus 7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~--------------~~~~~~~i~~~-----~g~i~~Lv~lL~~~~~~~ 67 (236)
.+.++.|+..|++++++++..|+.+|..+... ++..|....+. .+-.+.|+..|.++++.+
T Consensus 651 ~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~V 730 (897)
T PRK13800 651 PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRV 730 (897)
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHH
Confidence 34567777777777777777777777655311 11222222110 022334444444445555
Q ss_pred HHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCC
Q 044293 68 RTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPS 147 (236)
Q Consensus 68 ~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~ 147 (236)
|..|+.+|..+ +..+.|...+.+. +.+++..++.+|..+.... ...++.|..++++++
T Consensus 731 R~~Av~aL~~~-------------~~~~~l~~~l~D~-~~~VR~~aa~aL~~~~~~~--------~~~~~~L~~ll~D~d 788 (897)
T PRK13800 731 RIEAVRALVSV-------------DDVESVAGAATDE-NREVRIAVAKGLATLGAGG--------APAGDAVRALTGDPD 788 (897)
T ss_pred HHHHHHHHhcc-------------cCcHHHHHHhcCC-CHHHHHHHHHHHHHhcccc--------chhHHHHHHHhcCCC
Confidence 54444444432 1123344444444 4555555555544443211 123555666666666
Q ss_pred cHHHHHHHHHHHHHhcCCC---------------ChHHHHH-------hCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC
Q 044293 148 NPAGHHLLSSLAELVQFHG---------------NSTLAVR-------AGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR 205 (236)
Q Consensus 148 ~~~~~~a~~aL~~L~~~~~---------------~~~~~~~-------~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~ 205 (236)
+.++..|+.+|..+...+. .|...++ ...++.|+.+|++.+ ..++..|+.+|..+..
T Consensus 789 ~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~~a~~~L~~~L~D~~-~~VR~~A~~aL~~~~~ 867 (897)
T PRK13800 789 PLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAADVAVPALVEALTDPH-LDVRKAAVLALTRWPG 867 (897)
T ss_pred HHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccccchHHHHHHHhcCCC-HHHHHHHHHHHhccCC
Confidence 5566666655554432111 1111111 135688999998874 7899999999988744
Q ss_pred ChhhH
Q 044293 206 FDEGM 210 (236)
Q Consensus 206 ~~~~~ 210 (236)
+++.+
T Consensus 868 ~~~a~ 872 (897)
T PRK13800 868 DPAAR 872 (897)
T ss_pred CHHHH
Confidence 44433
No 46
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.56 E-value=3.2e-06 Score=75.07 Aligned_cols=152 Identities=14% Similarity=0.148 Sum_probs=122.1
Q ss_pred CCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCC-CchhHHhhhcccHHHH
Q 044293 19 SDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLN-PDLKQSLASMETIYRL 97 (236)
Q Consensus 19 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~L 97 (236)
..|.+....|+..+.+++..-...+..+... +++.+||++|..++..++..++++|+|+... .+-|..+...|||..+
T Consensus 388 ~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~-dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l 466 (678)
T KOG1293|consen 388 IKDHDFVAAALLCLKSFSRSVSALRTGLKRN-DVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDIL 466 (678)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHcCCccc-hhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHH
Confidence 4566677778888888877644455556665 8999999999888889999999999999886 4559999999999999
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhcccchhhhh--hcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcC-CCChHHHH
Q 044293 98 NWIIQSSSSQETVKLASSLICSLAMLDKNKAR--FGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQF-HGNSTLAV 172 (236)
Q Consensus 98 ~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~--i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~-~~~~~~~~ 172 (236)
..++.+. +..++..+.|+|+++....++... ....=....++.+..+++.++++.+...|+||.-. .+....++
T Consensus 467 ~s~~~~~-~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll 543 (678)
T KOG1293|consen 467 ESMLTDP-DFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLL 543 (678)
T ss_pred HHHhcCC-CchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHH
Confidence 9999998 899999999999999988755443 33334457788888899999999999999999764 34333333
No 47
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.55 E-value=5.6e-06 Score=79.06 Aligned_cols=166 Identities=16% Similarity=0.075 Sum_probs=100.1
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHH
Q 044293 8 ETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQS 87 (236)
Q Consensus 8 ~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~ 87 (236)
..++.|++.|+++++.+|+.|+..|..+. .. +.++.|+..|+++++.++..|+.+|..+.....
T Consensus 621 ~~~~~L~~~L~D~d~~VR~~Av~~L~~~~-----------~~-~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~---- 684 (897)
T PRK13800 621 PSVAELAPYLADPDPGVRRTAVAVLTETT-----------PP-GFGPALVAALGDGAAAVRRAAAEGLRELVEVLP---- 684 (897)
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHhhhc-----------ch-hHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC----
Confidence 46788999999999999999988888763 22 578888888988899999988888877632111
Q ss_pred hhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccch-------------hh----hhhcccCcHHHHHHhhcCCCcHH
Q 044293 88 LASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDK-------------NK----ARFGVAGTVQVLVKAVSAPSNPA 150 (236)
Q Consensus 88 i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~-------------~~----~~i~~~g~i~~Lv~lL~~~~~~~ 150 (236)
..+.|...|++. ++.++..|+.+|..+...+. .+ ..++..+..+.|...+.++++.+
T Consensus 685 -----~~~~L~~~L~~~-d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~V 758 (897)
T PRK13800 685 -----PAPALRDHLGSP-DPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREV 758 (897)
T ss_pred -----chHHHHHHhcCC-CHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHH
Confidence 123445555554 55666655555554421100 00 00000011233444444445555
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHc
Q 044293 151 GHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLA 204 (236)
Q Consensus 151 ~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~ 204 (236)
+..++.+|..+... ....++.|..++++.+ +.++..|+..|..+.
T Consensus 759 R~~aa~aL~~~~~~--------~~~~~~~L~~ll~D~d-~~VR~aA~~aLg~~g 803 (897)
T PRK13800 759 RIAVAKGLATLGAG--------GAPAGDAVRALTGDPD-PLVRAAALAALAELG 803 (897)
T ss_pred HHHHHHHHHHhccc--------cchhHHHHHHHhcCCC-HHHHHHHHHHHHhcC
Confidence 55555555444331 1123677888888774 778888888887763
No 48
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.53 E-value=1.7e-06 Score=77.74 Aligned_cols=186 Identities=18% Similarity=0.175 Sum_probs=96.7
Q ss_pred chHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhh-CCC
Q 044293 3 APRVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNL-SLN 81 (236)
Q Consensus 3 ~~~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l-~~~ 81 (236)
++-++..++.+.+.+.++++-+|.+|+.++..+...+++. .+. ++++.+..+|.+.++.++..|+.++..+ ..+
T Consensus 109 ~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~----~~~-~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~ 183 (526)
T PF01602_consen 109 PEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL----VED-ELIPKLKQLLSDKDPSVVSAALSLLSEIKCND 183 (526)
T ss_dssp HHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC----HHG-GHHHHHHHHTTHSSHHHHHHHHHHHHHHHCTH
T ss_pred cchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH----HHH-HHHHHHhhhccCCcchhHHHHHHHHHHHccCc
Confidence 4455667777888888888888888888888887765442 232 2688888888888888888888888888 111
Q ss_pred CchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHH
Q 044293 82 PDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAEL 161 (236)
Q Consensus 82 ~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L 161 (236)
+... . .-...++.|.+++... ++-.+..++.+|..++........ ....++.+..++++.++.+.-.|+.++..+
T Consensus 184 ~~~~-~-~~~~~~~~L~~~l~~~-~~~~q~~il~~l~~~~~~~~~~~~--~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l 258 (526)
T PF01602_consen 184 DSYK-S-LIPKLIRILCQLLSDP-DPWLQIKILRLLRRYAPMEPEDAD--KNRIIEPLLNLLQSSSPSVVYEAIRLIIKL 258 (526)
T ss_dssp HHHT-T-HHHHHHHHHHHHHTCC-SHHHHHHHHHHHTTSTSSSHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhh-h-hHHHHHHHhhhccccc-chHHHHHHHHHHHhcccCChhhhh--HHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 1111 0 0122233333333333 455555555555555443311110 023344444444443334444444444433
Q ss_pred hcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHc
Q 044293 162 VQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLA 204 (236)
Q Consensus 162 ~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~ 204 (236)
...+. .-..+++.++.++.+++ +.++-.++..|..++
T Consensus 259 ~~~~~-----~~~~~~~~L~~lL~s~~-~nvr~~~L~~L~~l~ 295 (526)
T PF01602_consen 259 SPSPE-----LLQKAINPLIKLLSSSD-PNVRYIALDSLSQLA 295 (526)
T ss_dssp SSSHH-----HHHHHHHHHHHHHTSSS-HHHHHHHHHHHHHHC
T ss_pred hcchH-----HHHhhHHHHHHHhhccc-chhehhHHHHHHHhh
Confidence 33222 22233444444444332 334444444444443
No 49
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.52 E-value=2.2e-07 Score=53.66 Aligned_cols=40 Identities=30% Similarity=0.438 Sum_probs=37.7
Q ss_pred ChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhC
Q 044293 39 SPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLS 79 (236)
Q Consensus 39 ~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~ 79 (236)
++++++.+.+. |++|.|+.+|+++++++++.|+++|.||+
T Consensus 1 ~~~~~~~i~~~-g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEA-GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHT-THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHc-ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 46889999998 99999999999999999999999999986
No 50
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.52 E-value=1.5e-07 Score=54.38 Aligned_cols=41 Identities=24% Similarity=0.259 Sum_probs=37.6
Q ss_pred CCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcc
Q 044293 81 NPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAM 122 (236)
Q Consensus 81 ~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~ 122 (236)
+++++..+++.|++|+|+++|+++ ++++++.|+|+|.||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~-~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSP-DPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSS-SHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhC
Confidence 357889999999999999999988 89999999999999974
No 51
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.50 E-value=1.7e-06 Score=74.31 Aligned_cols=164 Identities=13% Similarity=0.107 Sum_probs=131.5
Q ss_pred HhHHHHHHHHhcCCCHH--HHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccC-CChHHHHHHHHHHHhhCCCCc
Q 044293 7 RETINNCVSRSQSDSYE--DQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKS-SSPIIRTLSLSILLNLSLNPD 83 (236)
Q Consensus 7 ~~~i~~lv~~L~~~~~~--~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~ 83 (236)
++....|+.+++.++.+ ++.++.+.|..... .+|++.+... | ...++.+-.. ..++.++..+.+|.|+-.|.+
T Consensus 179 ~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~-~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSe 254 (832)
T KOG3678|consen 179 DGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARI-G-LGVILNLAKEREPVELARSVAGILEHMFKHSE 254 (832)
T ss_pred cchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhc-c-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhH
Confidence 57888999999987744 58889999987765 3688888875 5 6777666543 356888899999999999986
Q ss_pred h-hHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccc--hhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHH
Q 044293 84 L-KQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLD--KNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAE 160 (236)
Q Consensus 84 ~-~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~--~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~ 160 (236)
. +..++..|++..++--++.. ++.+..+|+.+|.|++.+. ..+..+.+..+-++|+-+-.+.+.-.+.+||.+...
T Consensus 255 et~~~Lvaa~~lD~vl~~~rRt-~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~v 333 (832)
T KOG3678|consen 255 ETCQRLVAAGGLDAVLYWCRRT-DPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAV 333 (832)
T ss_pred HHHHHHHhhcccchheeecccC-CHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhh
Confidence 4 88899999999998888888 8999999999999998765 567778888888999998888877788899999988
Q ss_pred HhcCCCChHHHHHhC
Q 044293 161 LVQFHGNSTLAVRAG 175 (236)
Q Consensus 161 L~~~~~~~~~~~~~g 175 (236)
|+..++.-..+.+.|
T Consensus 334 lat~KE~E~~VrkS~ 348 (832)
T KOG3678|consen 334 LATNKEVEREVRKSG 348 (832)
T ss_pred hhhhhhhhHHHhhcc
Confidence 887666444444343
No 52
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.42 E-value=2.6e-05 Score=63.74 Aligned_cols=218 Identities=12% Similarity=0.102 Sum_probs=150.8
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhH
Q 044293 7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQ 86 (236)
Q Consensus 7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~ 86 (236)
...++.+.++++...+ .+.|+.+|.+++.+ +..+..+.+. .+..+++.+.++....-...+.+|.|++.+++...
T Consensus 43 ~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~-~~l~~~ll~~--~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~ 117 (353)
T KOG2973|consen 43 EALLKDLTQLLKDLDP--AEPAATALVNLSQK-EELRKKLLQD--LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVA 117 (353)
T ss_pred hhhHHHHHHHccCccc--ccHHHHHHHHHHhh-HHHHHHHHHH--HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHH
Confidence 3467778888876665 56688999999986 6778888764 88888888877766667788899999999988754
Q ss_pred Hhh---h----cccHHHHHHHHhccCC-HHHHHHHHHHHHHhcccchhhhhhcccCcHH--HHHHhhcCCCcHHHHHHHH
Q 044293 87 SLA---S----METIYRLNWIIQSSSS-QETVKLASSLICSLAMLDKNKARFGVAGTVQ--VLVKAVSAPSNPAGHHLLS 156 (236)
Q Consensus 87 ~i~---~----~g~i~~L~~lL~~~~~-~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~--~Lv~lL~~~~~~~~~~a~~ 156 (236)
.+. . .|.+.......+++-+ ..-..+.+.++.|++.....|..+.+...++ .|+.+=..++.--+...+.
T Consensus 118 ~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~Gvag 197 (353)
T KOG2973|consen 118 ALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAG 197 (353)
T ss_pred HHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHhhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHH
Confidence 432 2 3455555555555422 2344678889999999998888888755222 2222222123233467788
Q ss_pred HHHHHhcCCCChHHHHH--hCcHHHHH---------------------HHhcCC----ChhhHHHHHHHHHHHHcCChhh
Q 044293 157 SLAELVQFHGNSTLAVR--AGAVSELI---------------------HLIGST----EAEDLAGTSLAVLNLLARFDEG 209 (236)
Q Consensus 157 aL~~L~~~~~~~~~~~~--~g~i~~lv---------------------~ll~~~----~~~~~~~~a~~~L~~l~~~~~~ 209 (236)
+|.|.|....+...+.. ...+|.++ +++... +++.++..-+.+|..||....+
T Consensus 198 tlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~G 277 (353)
T KOG2973|consen 198 TLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAG 277 (353)
T ss_pred HHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHh
Confidence 89999987776666554 23444433 334311 2467899999999999999999
Q ss_pred HHHHHhcCCcHHHHHHHhhCCc
Q 044293 210 MIALTKTDQIVSLMVDVLKGRS 231 (236)
Q Consensus 210 ~~~i~~~g~~i~~lv~~l~~~~ 231 (236)
|+.++.-|+ .++++-+..|.
T Consensus 278 Re~lR~kgv--YpilRElhk~e 297 (353)
T KOG2973|consen 278 REVLRSKGV--YPILRELHKWE 297 (353)
T ss_pred HHHHHhcCc--hHHHHHHhcCC
Confidence 999999874 77777776554
No 53
>PF05536 Neurochondrin: Neurochondrin
Probab=98.40 E-value=1.3e-05 Score=72.12 Aligned_cols=154 Identities=18% Similarity=0.175 Sum_probs=120.4
Q ss_pred cHHHHHhhccCCChHHHHHHHHHHHhhCCCCch----hHHhhhcccHHHHHHHHhccC------CHHHHHHHHHHHHHhc
Q 044293 52 AISTLLGLSKSSSPIIRTLSLSILLNLSLNPDL----KQSLASMETIYRLNWIIQSSS------SQETVKLASSLICSLA 121 (236)
Q Consensus 52 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~----~~~i~~~g~i~~L~~lL~~~~------~~~~~~~a~~~L~~Ls 121 (236)
.++.-+.+|+..+.+-+-.++..+..+...++. ++.|.+.=|.+-+-++|+++. ..+.+..|..+|..+|
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 467778889888855555566666677766542 345667666788888888742 3566777889999999
Q ss_pred ccchhhhhhcccCcHHHHHHhhcCCCc-HHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHH
Q 044293 122 MLDKNKARFGVAGTVQVLVKAVSAPSN-PAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVL 200 (236)
Q Consensus 122 ~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L 200 (236)
.+++....=.-.+-||.|++.+.+.+. .....|..+|..++.++++++.+++.|+++.|.+.+.+. +...+.|+.+|
T Consensus 86 ~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~~--~~~~E~Al~lL 163 (543)
T PF05536_consen 86 RDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPNQ--SFQMEIALNLL 163 (543)
T ss_pred CChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHhC--cchHHHHHHHH
Confidence 987655443236789999999998877 889999999999999999999999999999999999874 35678999999
Q ss_pred HHHcCCh
Q 044293 201 NLLARFD 207 (236)
Q Consensus 201 ~~l~~~~ 207 (236)
.+++...
T Consensus 164 ~~Lls~~ 170 (543)
T PF05536_consen 164 LNLLSRL 170 (543)
T ss_pred HHHHHhc
Confidence 9987643
No 54
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.39 E-value=2.4e-05 Score=70.36 Aligned_cols=187 Identities=21% Similarity=0.140 Sum_probs=134.6
Q ss_pred hHHHh-HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCC
Q 044293 4 PRVRE-TINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNP 82 (236)
Q Consensus 4 ~~~~~-~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~ 82 (236)
+.++. .++.+.++|++.++.++..|+.++..+ ..+++....+.. ..++.|.+++...+|-.+...+.++..++..+
T Consensus 147 ~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~--~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~ 223 (526)
T PF01602_consen 147 DLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIP--KLIRILCQLLSDPDPWLQIKILRLLRRYAPME 223 (526)
T ss_dssp CCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHH--HHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSS
T ss_pred HHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHH--HHHHHhhhcccccchHHHHHHHHHHHhcccCC
Confidence 44455 599999999999999999999999998 333333223332 46777777778889999999999999887765
Q ss_pred chhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHh
Q 044293 83 DLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELV 162 (236)
Q Consensus 83 ~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~ 162 (236)
.....- ...++.+..++++. ++.+.-.|+.++.++..... .-..++++|++++.+.++.++..++.+|..++
T Consensus 224 ~~~~~~--~~~i~~l~~~l~s~-~~~V~~e~~~~i~~l~~~~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~ 295 (526)
T PF01602_consen 224 PEDADK--NRIIEPLLNLLQSS-SPSVVYEAIRLIIKLSPSPE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLA 295 (526)
T ss_dssp HHHHHH--HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHSSSHH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHC
T ss_pred hhhhhH--HHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhcchH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhh
Confidence 442211 56788888888877 78888899999998877665 23567899999999888889999999999998
Q ss_pred cCCCChHHHHHhCcHHHHHHHhc-CCChhhHHHHHHHHHHHHcCCh
Q 044293 163 QFHGNSTLAVRAGAVSELIHLIG-STEAEDLAGTSLAVLNLLARFD 207 (236)
Q Consensus 163 ~~~~~~~~~~~~g~i~~lv~ll~-~~~~~~~~~~a~~~L~~l~~~~ 207 (236)
... ...+. .....+..+. +. +..++..++.+|..++...
T Consensus 296 ~~~---~~~v~--~~~~~~~~l~~~~-d~~Ir~~~l~lL~~l~~~~ 335 (526)
T PF01602_consen 296 QSN---PPAVF--NQSLILFFLLYDD-DPSIRKKALDLLYKLANES 335 (526)
T ss_dssp CHC---HHHHG--THHHHHHHHHCSS-SHHHHHHHHHHHHHH--HH
T ss_pred ccc---chhhh--hhhhhhheecCCC-ChhHHHHHHHHHhhccccc
Confidence 865 22222 2222333444 44 4678888888888887543
No 55
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.34 E-value=4.2e-05 Score=64.96 Aligned_cols=218 Identities=16% Similarity=0.175 Sum_probs=152.5
Q ss_pred HHHHHhcC-CCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhcc-C-CChHHHHHHHHHHHhhCCCCchhHHh
Q 044293 12 NCVSRSQS-DSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSK-S-SSPIIRTLSLSILLNLSLNPDLKQSL 88 (236)
Q Consensus 12 ~lv~~L~~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~-~-~~~~~~~~a~~~L~~l~~~~~~~~~i 88 (236)
.+...+++ .+.+...-++.+|+.+... ++.|..+..+ +++..++..+. + .+-.+|-..+-+++.|+.++.....+
T Consensus 160 ~l~~~l~~~~~~~~~~~~~rcLQ~ll~~-~eyR~~~v~a-dg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~ 237 (442)
T KOG2759|consen 160 FLKEQLQSSTNNDYIQFAARCLQTLLRV-DEYRYAFVIA-DGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKL 237 (442)
T ss_pred HHHHHHhccCCCchHHHHHHHHHHHhcC-cchhheeeec-CcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHH
Confidence 34444444 4455566688899999987 6789999998 89999998883 3 35578888999999999999888888
Q ss_pred hhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccc-------hhhhhhcccCcHHHHHHhhcCC--CcHHHHHHHHHH-
Q 044293 89 ASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLD-------KNKARFGVAGTVQVLVKAVSAP--SNPAGHHLLSSL- 158 (236)
Q Consensus 89 ~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~-------~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~aL- 158 (236)
...+.|+.|.++++.+..+.+.+-+++++.|+.... +...++.. +.+++-++.|... +++.....+.-|
T Consensus 238 ~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~-~~v~k~l~~L~~rkysDEDL~~di~~L~ 316 (442)
T KOG2759|consen 238 KRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVL-CKVLKTLQSLEERKYSDEDLVDDIEFLT 316 (442)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHh-cCchHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 888999999999998755678888999999997755 22334444 4456666666542 333222222222
Q ss_pred -------HHHhcC------------------------CCChHHHHH--hCcHHHHHHHhcCCChhhHHHHHHHHHHHHc-
Q 044293 159 -------AELVQF------------------------HGNSTLAVR--AGAVSELIHLIGSTEAEDLAGTSLAVLNLLA- 204 (236)
Q Consensus 159 -------~~L~~~------------------------~~~~~~~~~--~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~- 204 (236)
..||+. .+|...+-+ ...+..|+.+|..+++|.+.--|+-=+....
T Consensus 317 e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr 396 (442)
T KOG2759|consen 317 EKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVR 396 (442)
T ss_pred HHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHH
Confidence 122221 123444443 3468889999988755655555555555554
Q ss_pred CChhhHHHHHhcCCcHHHHHHHhhCCccc
Q 044293 205 RFDEGMIALTKTDQIVSLMVDVLKGRSMF 233 (236)
Q Consensus 205 ~~~~~~~~i~~~g~~i~~lv~~l~~~~~~ 233 (236)
..|+++..+-+.|| =..+.++|.+.+|.
T Consensus 397 ~yP~gk~vv~k~gg-Ke~vM~Llnh~d~~ 424 (442)
T KOG2759|consen 397 HYPEGKAVVEKYGG-KERVMNLLNHEDPE 424 (442)
T ss_pred hCchHhHHHHHhch-HHHHHHHhcCCCch
Confidence 68999999999999 68889999887764
No 56
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.30 E-value=0.00012 Score=62.65 Aligned_cols=216 Identities=11% Similarity=0.090 Sum_probs=157.6
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCh---------HHHHHHHhccCcHHHHHhhccCCCh------HHHHHHH
Q 044293 8 ETINNCVSRSQSDSYEDQQKALQTLASITRVSP---------QYRSLLAQTDGAISTLLGLSKSSSP------IIRTLSL 72 (236)
Q Consensus 8 ~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~---------~~~~~i~~~~g~i~~Lv~lL~~~~~------~~~~~a~ 72 (236)
.+++.++.+|.+++.++-...+..|+.++..+- ..-.++++. ++++.|++=+..-+. .-..+++
T Consensus 125 n~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg-~vlaLLvqnveRLdEsvkeea~gv~~~L 203 (536)
T KOG2734|consen 125 NAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDG-QVLALLVQNVERLDESVKEEADGVHNTL 203 (536)
T ss_pred ccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhc-cHHHHHHHHHHHhhhcchhhhhhhHHHH
Confidence 478999999999999999999999999986521 234566776 888888876543222 2245677
Q ss_pred HHHHhhCCCC-chhHHhhhcccHHHHHHHHh-ccCCHHHHHHHHHHHHHhcccc-hhhhhhcccCcHHHHHHhhcC---C
Q 044293 73 SILLNLSLNP-DLKQSLASMETIYRLNWIIQ-SSSSQETVKLASSLICSLAMLD-KNKARFGVAGTVQVLVKAVSA---P 146 (236)
Q Consensus 73 ~~L~~l~~~~-~~~~~i~~~g~i~~L~~lL~-~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~---~ 146 (236)
.++-|+.... +....+++.|.+.+|+.-+. ...-...+.+|..+|.-+-.+. +++..++...++..+++-+.. .
T Consensus 204 ~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~ 283 (536)
T KOG2734|consen 204 AVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRH 283 (536)
T ss_pred HHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhcc
Confidence 7777876654 55788888888888887543 2212356778888888665554 588888888999999987742 1
Q ss_pred C---c---HHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCCh---hhHHHHHhcC
Q 044293 147 S---N---PAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFD---EGMIALTKTD 217 (236)
Q Consensus 147 ~---~---~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~---~~~~~i~~~g 217 (236)
+ + ...++-..+|+.+-..+.|+..+....++..+.-+++.. ...+-.++++|.....++ +++..+++..
T Consensus 284 dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~K--k~sr~SalkvLd~am~g~~gt~~C~kfVe~l 361 (536)
T KOG2734|consen 284 DPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLREK--KVSRGSALKVLDHAMFGPEGTPNCNKFVEIL 361 (536)
T ss_pred CCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHHH--HHhhhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 2 1 244677777877778999999999988888777777653 345678999999887665 5788899988
Q ss_pred CcHHHHHHHh
Q 044293 218 QIVSLMVDVL 227 (236)
Q Consensus 218 ~~i~~lv~~l 227 (236)
| ...+...+
T Consensus 362 G-LrtiF~~F 370 (536)
T KOG2734|consen 362 G-LRTIFPLF 370 (536)
T ss_pred h-HHHHHHHH
Confidence 8 56665533
No 57
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.28 E-value=0.00015 Score=66.08 Aligned_cols=210 Identities=18% Similarity=0.151 Sum_probs=161.6
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-ChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchh
Q 044293 7 RETINNCVSRSQSDSYEDQQKALQTLASITRV-SPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLK 85 (236)
Q Consensus 7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~ 85 (236)
++.|.-++..+...+=.+|.++...|..+... ..+.+.++...|-+|..|+++|......+|..++-.|..+..+....
T Consensus 121 qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~I 200 (970)
T KOG0946|consen 121 QDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSI 200 (970)
T ss_pred chhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchH
Confidence 56888999999888888999999999887765 56788999999999999999999888889999999999999988775
Q ss_pred HHhh-hcccHHHHHHHHhccC--C-HHHHHHHHHHHHHhcccc-hhhhhhcccCcHHHHHHhhcCC---C-------cH-
Q 044293 86 QSLA-SMETIYRLNWIIQSSS--S-QETVKLASSLICSLAMLD-KNKARFGVAGTVQVLVKAVSAP---S-------NP- 149 (236)
Q Consensus 86 ~~i~-~~g~i~~L~~lL~~~~--~-~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~---~-------~~- 149 (236)
+.++ =.++-..|..++.... + --+.+.|...|-||-.+. .|..-+.+.+.||.|.++|... + +.
T Consensus 201 QKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qr 280 (970)
T KOG0946|consen 201 QKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQR 280 (970)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHH
Confidence 5544 4568889999988532 2 246788999999998776 6777777899999999998642 2 11
Q ss_pred --HHHHHHHHHHHHhcCC-------CChHHHHHhCcHHHHHHHhcCC-ChhhHHHHHHHHHHHHcC-ChhhHHHHHhc
Q 044293 150 --AGHHLLSSLAELVQFH-------GNSTLAVRAGAVSELIHLIGST-EAEDLAGTSLAVLNLLAR-FDEGMIALTKT 216 (236)
Q Consensus 150 --~~~~a~~aL~~L~~~~-------~~~~~~~~~g~i~~lv~ll~~~-~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~ 216 (236)
-...++.+++.|.... .+.+.+.+.+++..|..++.++ -..+++..++-+.+++.+ +..++..|...
T Consensus 281 v~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v 358 (970)
T KOG0946|consen 281 VQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADV 358 (970)
T ss_pred HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhc
Confidence 1234455555554422 1345677789999999988765 346788888888888875 55788887754
No 58
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.28 E-value=6.1e-06 Score=55.73 Aligned_cols=87 Identities=18% Similarity=0.224 Sum_probs=70.2
Q ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHh
Q 044293 10 INNCVSRS-QSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSL 88 (236)
Q Consensus 10 i~~lv~~L-~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i 88 (236)
|+.|++.| +++++.++..++++|..+. .. ..++.|+.+++++++.++..|+.+|..+
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~-----------~~-~~~~~L~~~l~d~~~~vr~~a~~aL~~i---------- 58 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG-----------DP-EAIPALIELLKDEDPMVRRAAARALGRI---------- 58 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT-----------HH-HHHHHHHHHHTSSSHHHHHHHHHHHHCC----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC-----------CH-hHHHHHHHHHcCCCHHHHHHHHHHHHHh----------
Confidence 68899999 7889999999988888331 11 4689999999999999999999999987
Q ss_pred hhcccHHHHHHHHhccCCHHHHHHHHHHHH
Q 044293 89 ASMETIYRLNWIIQSSSSQETVKLASSLIC 118 (236)
Q Consensus 89 ~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~ 118 (236)
.....++.|.++++++.+..++..|+.+|.
T Consensus 59 ~~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 59 GDPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 245689999999988745667888888763
No 59
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.28 E-value=1.4e-05 Score=68.81 Aligned_cols=172 Identities=14% Similarity=0.104 Sum_probs=138.8
Q ss_pred HHHHHhccCcHHHHHhhccCCChHH--HHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHh
Q 044293 43 RSLLAQTDGAISTLLGLSKSSSPII--RTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSL 120 (236)
Q Consensus 43 ~~~i~~~~g~i~~Lv~lL~~~~~~~--~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~L 120 (236)
...+... |++..|+.++..++-+. +..+...|-.+ ...+|+..++..| +..++.+-+..+.++.....++.|.++
T Consensus 173 CD~iR~~-~~lD~Llrmf~aPn~et~vRve~~rlLEq~-~~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m 249 (832)
T KOG3678|consen 173 CDAIRLD-GGLDLLLRMFQAPNLETSVRVEAARLLEQI-LVAENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHM 249 (832)
T ss_pred hhHhhcc-chHHHHHHHHhCCchhHHHHHHHHHHHHHH-HhhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence 4556665 99999999998876544 77788888765 3457888888766 666666666554689999999999998
Q ss_pred cccc-hhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcC--CCChHHHHHhCcHHHHHHHhcCCChhhHHHHHH
Q 044293 121 AMLD-KNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQF--HGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSL 197 (236)
Q Consensus 121 s~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~--~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~ 197 (236)
-.+. +.+..+.+.|++..++--.+..++...++|+.+|.|+..+ ...++.|++..+..+|..|-.+.| .-++-+|+
T Consensus 250 FKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skD-el~R~~AC 328 (832)
T KOG3678|consen 250 FKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKD-ELLRLHAC 328 (832)
T ss_pred hhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchH-HHHHHHHH
Confidence 7654 6788888999999999888888899999999999999985 467888999999999998887764 45667788
Q ss_pred HHHHHHcCChhhHHHHHhcCC
Q 044293 198 AVLNLLARFDEGMIALTKTDQ 218 (236)
Q Consensus 198 ~~L~~l~~~~~~~~~i~~~g~ 218 (236)
-+.+.++.+.+.-..+.+.|.
T Consensus 329 lAV~vlat~KE~E~~VrkS~T 349 (832)
T KOG3678|consen 329 LAVAVLATNKEVEREVRKSGT 349 (832)
T ss_pred HHHhhhhhhhhhhHHHhhccc
Confidence 888899999988888888874
No 60
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.27 E-value=7.2e-06 Score=55.34 Aligned_cols=88 Identities=16% Similarity=0.211 Sum_probs=69.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCCChHHHHH
Q 044293 94 IYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVR 173 (236)
Q Consensus 94 i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~ 173 (236)
|+.|++.|..+.++.++..++.+|..+ ....+++.|+.++.++++.++..|+++|..+. .
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~----------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------~ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL----------GDPEAIPALIELLKDEDPMVRRAAARALGRIG----------D 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC----------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------H
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc----------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------C
Confidence 688999994443899999999998833 22366999999999999999999999998773 3
Q ss_pred hCcHHHHHHHhcCCChhhHHHHHHHHHH
Q 044293 174 AGAVSELIHLIGSTEAEDLAGTSLAVLN 201 (236)
Q Consensus 174 ~g~i~~lv~ll~~~~~~~~~~~a~~~L~ 201 (236)
..+++.|.+++.++++..++..|+.+|.
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 5588999999988655566788888774
No 61
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=0.00018 Score=67.51 Aligned_cols=221 Identities=17% Similarity=0.171 Sum_probs=152.8
Q ss_pred HHHhHHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCc
Q 044293 5 RVRETINNCVSRSQ-SDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPD 83 (236)
Q Consensus 5 ~~~~~i~~lv~~L~-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~ 83 (236)
..-+.-+-+...+. ..++.++.-|+..+..++.+.+ --..+++. |.+..|+.+|.+ .|..+..++.+|+.|+..++
T Consensus 1768 ~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~-Cv~~~a~~-~vL~~LL~lLHS-~PS~R~~vL~vLYAL~S~~~ 1844 (2235)
T KOG1789|consen 1768 LLIGNFPLLITYLRCRKHPKLQILALQVILLATANKE-CVTDLATC-NVLTTLLTLLHS-QPSMRARVLDVLYALSSNGQ 1844 (2235)
T ss_pred hhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccH-HHHHHHhh-hHHHHHHHHHhc-ChHHHHHHHHHHHHHhcCcH
Confidence 33445555666665 4677888889999988887643 45667777 889999998865 67889999999999999988
Q ss_pred hhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccc---------------------------------------
Q 044293 84 LKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLD--------------------------------------- 124 (236)
Q Consensus 84 ~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~--------------------------------------- 124 (236)
--..-.+.|++.-+.+++-....++.+..++..+..|..++
T Consensus 1845 i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~En 1924 (2235)
T KOG1789|consen 1845 IGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSEN 1924 (2235)
T ss_pred HHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCC
Confidence 75555677777777766644435666666666655543211
Q ss_pred --------------------------------------------------------------------------------
Q 044293 125 -------------------------------------------------------------------------------- 124 (236)
Q Consensus 125 -------------------------------------------------------------------------------- 124 (236)
T Consensus 1925 PELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~L 2004 (2235)
T KOG1789|consen 1925 PELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTEL 2004 (2235)
T ss_pred cccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHH
Confidence
Q ss_pred ---------------------------------hhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCCChHHH
Q 044293 125 ---------------------------------KNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLA 171 (236)
Q Consensus 125 ---------------------------------~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~ 171 (236)
.-..++...|-+|.++.-+...+...-..|+++|..|+.+.--+..|
T Consensus 2005 Lek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~~C~~AM 2084 (2235)
T KOG1789|consen 2005 LEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQFCCDAM 2084 (2235)
T ss_pred HHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhccHHHHHH
Confidence 00011112344444444333333333367888899999888888889
Q ss_pred HHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC--ChhhHHHHHhcCCcHHHHHHHhhCCc
Q 044293 172 VRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR--FDEGMIALTKTDQIVSLMVDVLKGRS 231 (236)
Q Consensus 172 ~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~--~~~~~~~i~~~g~~i~~lv~~l~~~~ 231 (236)
.+...+..++..++.. +...-.|+.+|..+.. .++--.+..+.| ++|.|+.+|...+
T Consensus 2085 A~l~~i~~~m~~mkK~--~~~~GLA~EalkR~~~r~~~eLVAQ~LK~g-LvpyLL~LLd~~t 2143 (2235)
T KOG1789|consen 2085 AQLPCIDGIMKSMKKQ--PSLMGLAAEALKRLMKRNTGELVAQMLKCG-LVPYLLQLLDSST 2143 (2235)
T ss_pred hccccchhhHHHHHhc--chHHHHHHHHHHHHHHHhHHHHHHHHhccC-cHHHHHHHhcccc
Confidence 8888888899988765 3566788899988764 346677788887 6999999997543
No 62
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.24 E-value=0.00011 Score=63.10 Aligned_cols=218 Identities=15% Similarity=0.133 Sum_probs=147.1
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCC--ChHHHHHHHHHHHhhCCCCch
Q 044293 7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSS--SPIIRTLSLSILLNLSLNPDL 84 (236)
Q Consensus 7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~l~~~~~~ 84 (236)
....+.+..++-+++.+++..|++.++.+..+ +..-+.+.+. +.=-.++.-|..+ +..-++.|+..+..+...+++
T Consensus 24 ~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d-~~~l~~~~~l-~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~ 101 (371)
T PF14664_consen 24 SFFGERIQCMLLSDSKEVRAAGYRILRYLISD-EESLQILLKL-HIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKG 101 (371)
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcC-HHHHHHHHHc-CCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCC
Confidence 34455555555556688999999999999887 4566777776 6444455556543 334477888888877666554
Q ss_pred hHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcC
Q 044293 85 KQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQF 164 (236)
Q Consensus 85 ~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~ 164 (236)
...+ ..|.+..++.+..+. ++..+.-|..+|..++..+ -+.+..+||+..|++.+.++.....+..+.++.++-.+
T Consensus 102 ~~~~-~~~vvralvaiae~~-~D~lr~~cletL~El~l~~--P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~ 177 (371)
T PF14664_consen 102 PKEI-PRGVVRALVAIAEHE-DDRLRRICLETLCELALLN--PELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDS 177 (371)
T ss_pred cccC-CHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHhhC--HHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCC
Confidence 3333 678999999999987 7889999999999999854 56667799999999999987767778888999999999
Q ss_pred CCChHHHHHhCcHHHHHHHhcCC------Chh--hHHHHHHHHHHHHcCChhhHHHHHhcC--CcHHHHHHHhhCCc
Q 044293 165 HGNSTLAVRAGAVSELIHLIGST------EAE--DLAGTSLAVLNLLARFDEGMIALTKTD--QIVSLMVDVLKGRS 231 (236)
Q Consensus 165 ~~~~~~~~~~g~i~~lv~ll~~~------~~~--~~~~~a~~~L~~l~~~~~~~~~i~~~g--~~i~~lv~~l~~~~ 231 (236)
|..|+.+.-.--+..++.-+.+. ++. +....+..++..+-.+=.|--.+...+ | +..|+..|+..+
T Consensus 178 p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~-lksLv~~L~~p~ 253 (371)
T PF14664_consen 178 PRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRG-LKSLVDSLRLPN 253 (371)
T ss_pred cchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchH-HHHHHHHHcCCC
Confidence 99998876544455555554332 112 233445555554444433333333222 4 566666665443
No 63
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.22 E-value=4.6e-05 Score=68.11 Aligned_cols=177 Identities=13% Similarity=0.066 Sum_probs=130.9
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHH-----HHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCC
Q 044293 7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSL-----LAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLN 81 (236)
Q Consensus 7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~-----i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~ 81 (236)
++.+|.|..+|.+++...++.|..+|++.+.++++.-.. .. +-.+|.++.+.++++|.+|..|+.++..+-..
T Consensus 127 pelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl--~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~ 204 (885)
T KOG2023|consen 127 PELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPL--NIMIPKFLQFFKHPSPKIRSHAVGCVNQFIII 204 (885)
T ss_pred hhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCch--HHhHHHHHHHHhCCChhHHHHHHhhhhheeec
Confidence 678999999999999889999999999999886653221 12 24799999999999999999999988765443
Q ss_pred CchhHHhh-hcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHH
Q 044293 82 PDLKQSLA-SMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAE 160 (236)
Q Consensus 82 ~~~~~~i~-~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~ 160 (236)
.. ..... -..+++.+..+-... ++++|++.+.++..|....-.|-.=.-.+.++.++..-++.+..+--.|+.....
T Consensus 205 ~~-qal~~~iD~Fle~lFalanD~-~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla 282 (885)
T KOG2023|consen 205 QT-QALYVHIDKFLEILFALANDE-DPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLA 282 (885)
T ss_pred Cc-HHHHHHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHH
Confidence 22 22222 234677777766555 8999999999999988765323221226788888888888888888899999999
Q ss_pred HhcCCCChHHHHH--hCcHHHHHHHhcCC
Q 044293 161 LVQFHGNSTLAVR--AGAVSELIHLIGST 187 (236)
Q Consensus 161 L~~~~~~~~~~~~--~g~i~~lv~ll~~~ 187 (236)
++..+--+..+.. ...+|.|++=+..+
T Consensus 283 ~aeqpi~~~~L~p~l~kliPvLl~~M~Ys 311 (885)
T KOG2023|consen 283 LAEQPICKEVLQPYLDKLIPVLLSGMVYS 311 (885)
T ss_pred HhcCcCcHHHHHHHHHHHHHHHHccCccc
Confidence 9988844444433 47788888866543
No 64
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.22 E-value=0.00016 Score=62.15 Aligned_cols=192 Identities=16% Similarity=0.133 Sum_probs=144.9
Q ss_pred HHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccC-CHHH
Q 044293 31 TLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSS-SQET 109 (236)
Q Consensus 31 ~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~-~~~~ 109 (236)
.|..+...++..+..+.-. ...+.+..++=+++.+++..+.+++..+..+++.-..+.+.+.-..++.-|..+. +..-
T Consensus 6 ~Lv~l~~~~p~l~~~~~~~-~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~E 84 (371)
T PF14664_consen 6 DLVDLLKRHPTLKYDLVLS-FFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVE 84 (371)
T ss_pred HHHHHHHhCchhhhhhhHH-HHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHH
Confidence 4555555566556555544 4555555444344599999999999999999998888888877777777777653 5677
Q ss_pred HHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCCh
Q 044293 110 VKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEA 189 (236)
Q Consensus 110 ~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~ 189 (236)
+++|...+..+...+++...+ -.|.+..++.+..+.+++.+..|+.+|..++.. +-+.+.++|++..+++.+.++.
T Consensus 85 R~QALkliR~~l~~~~~~~~~-~~~vvralvaiae~~~D~lr~~cletL~El~l~--~P~lv~~~gG~~~L~~~l~d~~- 160 (371)
T PF14664_consen 85 REQALKLIRAFLEIKKGPKEI-PRGVVRALVAIAEHEDDRLRRICLETLCELALL--NPELVAECGGIRVLLRALIDGS- 160 (371)
T ss_pred HHHHHHHHHHHHHhcCCcccC-CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhh--CHHHHHHcCCHHHHHHHHHhcc-
Confidence 889999999887775443333 469999999999999989999999999999983 3456678999999999998764
Q ss_pred hhHHHHHHHHHHHHcCChhhHHHHHhcCCcHHHHHHHhh
Q 044293 190 EDLAGTSLAVLNLLARFDEGMIALTKTDQIVSLMVDVLK 228 (236)
Q Consensus 190 ~~~~~~a~~~L~~l~~~~~~~~~i~~~g~~i~~lv~~l~ 228 (236)
.++.+.++.++..+..+|..|+-+...-. ++.+..-+.
T Consensus 161 ~~~~~~l~~~lL~lLd~p~tR~yl~~~~d-L~~l~apft 198 (371)
T PF14664_consen 161 FSISESLLDTLLYLLDSPRTRKYLRPGFD-LESLLAPFT 198 (371)
T ss_pred HhHHHHHHHHHHHHhCCcchhhhhcCCcc-HHHHHHhhh
Confidence 45888999999999999999887665333 455554443
No 65
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.21 E-value=5.6e-05 Score=66.37 Aligned_cols=202 Identities=13% Similarity=0.101 Sum_probs=142.8
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhH
Q 044293 7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQ 86 (236)
Q Consensus 7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~ 86 (236)
.+..+-|..+|.+++.++|..+-.+|..+..+ -.+.......+..++.++.-+.++++.+|..|+.-+..+..-+..--
T Consensus 207 ~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~e-I~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~ 285 (675)
T KOG0212|consen 207 PSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAE-IRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDL 285 (675)
T ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH-HhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcch
Confidence 45667788899999999987666656555443 12233332335789999999999999999999888877666554433
Q ss_pred HhhhcccHHHHHHHHhccCCHHHHHHHH---HHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhc
Q 044293 87 SLASMETIYRLNWIIQSSSSQETVKLAS---SLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQ 163 (236)
Q Consensus 87 ~i~~~g~i~~L~~lL~~~~~~~~~~~a~---~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~ 163 (236)
...-.|.+..++.++.+.+...++..+. ..|..+...+..+..+.-...+..|.+.+.+....++..++.-+..|=.
T Consensus 286 l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~ 365 (675)
T KOG0212|consen 286 LLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYH 365 (675)
T ss_pred hhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHh
Confidence 3334566666666665542112343333 2355555555445555446788899999998888888888888877777
Q ss_pred CCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChhhH
Q 044293 164 FHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGM 210 (236)
Q Consensus 164 ~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~ 210 (236)
..++.-...-....+.|+.-|++.+ .++...++..+.++|.+++.+
T Consensus 366 ~~p~ql~~h~~~if~tLL~tLsd~s-d~vvl~~L~lla~i~~s~~~~ 411 (675)
T KOG0212|consen 366 KAPGQLLVHNDSIFLTLLKTLSDRS-DEVVLLALSLLASICSSSNSP 411 (675)
T ss_pred hCcchhhhhccHHHHHHHHhhcCch-hHHHHHHHHHHHHHhcCcccc
Confidence 6677666666788999999999875 578899999999999887654
No 66
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.19 E-value=2.1e-05 Score=63.00 Aligned_cols=182 Identities=12% Similarity=0.120 Sum_probs=115.9
Q ss_pred cCCCHHHHHHHHHHHHHHhcCC--hHHHHHHHhc-cCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhhhcccH
Q 044293 18 QSDSYEDQQKALQTLASITRVS--PQYRSLLAQT-DGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASMETI 94 (236)
Q Consensus 18 ~~~~~~~~~~a~~~L~~l~~~~--~~~~~~i~~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i 94 (236)
.+.+.+.+.+|+..|+.+..++ ......+.+. ...++.+...+++....+...|+.++..++..-...-.-.-...+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 5678999999999999998876 2333333321 134456666776667778889999999888765443222245688
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCc-HHHHHHhhcCCCcHHHHHHHHHHHHHhcCCC-ChHHHH
Q 044293 95 YRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGT-VQVLVKAVSAPSNPAGHHLLSSLAELVQFHG-NSTLAV 172 (236)
Q Consensus 95 ~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~-i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~-~~~~~~ 172 (236)
|.|++.+.++ ...++..|..+|..+...-.... .. ++.+...+.+.|+.++..++..+..+...-. ....+-
T Consensus 97 ~~Ll~~~~~~-~~~i~~~a~~~L~~i~~~~~~~~-----~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~ 170 (228)
T PF12348_consen 97 PPLLKKLGDS-KKFIREAANNALDAIIESCSYSP-----KILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQ 170 (228)
T ss_dssp HHHHHGGG----HHHHHHHHHHHHHHHTTS-H-------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG-
T ss_pred HHHHHHHccc-cHHHHHHHHHHHHHHHHHCCcHH-----HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhc
Confidence 9999999887 78899999999998887543111 22 5667777888999999999999988766332 212111
Q ss_pred ----HhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCC
Q 044293 173 ----RAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARF 206 (236)
Q Consensus 173 ----~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~ 206 (236)
-...++.+...+.+.+ +++++.|-.++..+...
T Consensus 171 ~~~~~~~l~~~l~~~l~D~~-~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 171 KSAFLKQLVKALVKLLSDAD-PEVREAARECLWALYSH 207 (228)
T ss_dssp -HHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHH
Confidence 1456788888888884 88999998888888653
No 67
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.17 E-value=0.00043 Score=59.35 Aligned_cols=199 Identities=16% Similarity=0.169 Sum_probs=147.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCC------ch----hHHhhhcccHHH
Q 044293 27 KALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNP------DL----KQSLASMETIYR 96 (236)
Q Consensus 27 ~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~------~~----~~~i~~~g~i~~ 96 (236)
.....+.-++.- |+....+.+. ++++.|+++|.+.+.++.-..+..|..+.-.+ ++ -..+++.+.++.
T Consensus 103 d~IQ~mhvlAt~-PdLYp~lvel-n~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaL 180 (536)
T KOG2734|consen 103 DIIQEMHVLATM-PDLYPILVEL-NAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLAL 180 (536)
T ss_pred HHHHHHHhhhcC-hHHHHHHHHh-ccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHH
Confidence 345556666664 8888899999 99999999999999888777777777764421 21 234667899999
Q ss_pred HHHHHhccCCH------HHHHHHHHHHHHhcccc-hhhhhhcccCcHHHHHHhhcCC-C-cHHHHHHHHHHHHHhcC-CC
Q 044293 97 LNWIIQSSSSQ------ETVKLASSLICSLAMLD-KNKARFGVAGTVQVLVKAVSAP-S-NPAGHHLLSSLAELVQF-HG 166 (236)
Q Consensus 97 L~~lL~~~~~~------~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~-~-~~~~~~a~~aL~~L~~~-~~ 166 (236)
|++-+..- |. +...++.+.+-|+...+ +....+.+.|.+.+|++-+... . +.-..+|...|+-+-.+ .+
T Consensus 181 LvqnveRL-dEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e 259 (536)
T KOG2734|consen 181 LVQNVERL-DESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDE 259 (536)
T ss_pred HHHHHHHh-hhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCch
Confidence 99988754 22 34456777788887654 6788888899999999865543 2 23456777777777764 56
Q ss_pred ChHHHHHhCcHHHHHHHhcC--------CChhhHHHHHHHHHHHHcCChhhHHHHHhcCCcHHHHHHHhhC
Q 044293 167 NSTLAVRAGAVSELIHLIGS--------TEAEDLAGTSLAVLNLLARFDEGMIALTKTDQIVSLMVDVLKG 229 (236)
Q Consensus 167 ~~~~~~~~g~i~~lv~ll~~--------~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~~i~~lv~~l~~ 229 (236)
++......+++..+++-+.- .+..+..++-..+||.+...+++|+.++...| +....-+++.
T Consensus 260 ~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EG-lqLm~Lmlr~ 329 (536)
T KOG2734|consen 260 NRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEG-LQLMNLMLRE 329 (536)
T ss_pred hhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhcccc-HHHHHHHHHH
Confidence 88888889999999887752 13467788999999999999999999999998 5555445543
No 68
>PTZ00429 beta-adaptin; Provisional
Probab=98.16 E-value=0.00054 Score=63.84 Aligned_cols=124 Identities=16% Similarity=0.176 Sum_probs=79.6
Q ss_pred HHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcc
Q 044293 53 ISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGV 132 (236)
Q Consensus 53 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~ 132 (236)
+..|.+=+.++++.+|-.|++.++.+-. ..+.+ -.++++.+.+.+. ++-+|+.|+.++.++-..+ ...+.+
T Consensus 107 INtl~KDl~d~Np~IRaLALRtLs~Ir~-----~~i~e-~l~~~lkk~L~D~-~pYVRKtAalai~Kly~~~--pelv~~ 177 (746)
T PTZ00429 107 VNTFLQDTTNSSPVVRALAVRTMMCIRV-----SSVLE-YTLEPLRRAVADP-DPYVRKTAAMGLGKLFHDD--MQLFYQ 177 (746)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHcCCc-----HHHHH-HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhC--cccccc
Confidence 3444444555566666655555554332 11211 2455566667666 8999999999999986543 234456
Q ss_pred cCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcC
Q 044293 133 AGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGS 186 (236)
Q Consensus 133 ~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~ 186 (236)
.|.++.|.++|.+.++.++.+|+.+|..++......- -...+.+..++..+.+
T Consensus 178 ~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l-~l~~~~~~~Ll~~L~e 230 (746)
T PTZ00429 178 QDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI-ESSNEWVNRLVYHLPE 230 (746)
T ss_pred cchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh-HHHHHHHHHHHHHhhc
Confidence 7899999999999999999999999999986543221 1223444555555544
No 69
>PTZ00429 beta-adaptin; Provisional
Probab=98.15 E-value=0.00025 Score=66.00 Aligned_cols=179 Identities=13% Similarity=0.094 Sum_probs=130.5
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhH
Q 044293 7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQ 86 (236)
Q Consensus 7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~ 86 (236)
++.+..+-..|++.+...+..+++.+-.+...+.+.. .+.+..+.++.+.+.+.++...-.+.+.+.......
T Consensus 31 kge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~DvS-------~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pela 103 (746)
T PTZ00429 31 RGEGAELQNDLNGTDSYRKKAAVKRIIANMTMGRDVS-------YLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKA 103 (746)
T ss_pred cchHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCch-------HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHH
Confidence 4567788888888887777888876544443333322 345666678888999999888888888876443322
Q ss_pred HhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCC
Q 044293 87 SLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHG 166 (236)
Q Consensus 87 ~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~ 166 (236)
.+ .+..|.+=+++. ++.+|..|.++|..+-...- . .-.++++.+.+.+.++-+++.|+.++..+-....
T Consensus 104 lL----aINtl~KDl~d~-Np~IRaLALRtLs~Ir~~~i-----~-e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p 172 (746)
T PTZ00429 104 LL----AVNTFLQDTTNS-SPVVRALAVRTMMCIRVSSV-----L-EYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM 172 (746)
T ss_pred HH----HHHHHHHHcCCC-CHHHHHHHHHHHHcCCcHHH-----H-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc
Confidence 22 456677777777 89999999999888655331 1 2346777788888999999999999999865333
Q ss_pred ChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCC
Q 044293 167 NSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARF 206 (236)
Q Consensus 167 ~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~ 206 (236)
..+.+.|.++.+.++|.+.+ +.+.-+|+.+|..+...
T Consensus 173 --elv~~~~~~~~L~~LL~D~d-p~Vv~nAl~aL~eI~~~ 209 (746)
T PTZ00429 173 --QLFYQQDFKKDLVELLNDNN-PVVASNAAAIVCEVNDY 209 (746)
T ss_pred --ccccccchHHHHHHHhcCCC-ccHHHHHHHHHHHHHHh
Confidence 23445788899999998874 78999999999999754
No 70
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.98 E-value=2.2e-05 Score=44.86 Aligned_cols=40 Identities=23% Similarity=0.244 Sum_probs=36.3
Q ss_pred hHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCC
Q 044293 40 PQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSL 80 (236)
Q Consensus 40 ~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~ 80 (236)
++++..+.+. |+++.|+.++++++++++..++++|.|++.
T Consensus 2 ~~~~~~i~~~-g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDA-GGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHC-CCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 3478889998 999999999999999999999999999873
No 71
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.96 E-value=0.00066 Score=64.24 Aligned_cols=222 Identities=15% Similarity=0.119 Sum_probs=140.9
Q ss_pred hHHHHHHHHhc--CCCHHHHHHHHHHHHHHhcCChHHHHHHHhc-cCcHHHHHhhccCC--C-----------h---HHH
Q 044293 8 ETINNCVSRSQ--SDSYEDQQKALQTLASITRVSPQYRSLLAQT-DGAISTLLGLSKSS--S-----------P---IIR 68 (236)
Q Consensus 8 ~~i~~lv~~L~--~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~-~g~i~~Lv~lL~~~--~-----------~---~~~ 68 (236)
+.|+..++..+ .-+.++|..|++.|..++...+...+.-... +-.++.+..+.... | . ..-
T Consensus 247 ~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~ 326 (1075)
T KOG2171|consen 247 QIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPY 326 (1075)
T ss_pred HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcH
Confidence 33444444443 3467889999999999988744332211111 13455555554321 1 0 123
Q ss_pred HHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcc-cCcHHHHHHhhcCCC
Q 044293 69 TLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGV-AGTVQVLVKAVSAPS 147 (236)
Q Consensus 69 ~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~ 147 (236)
..|..+|-.+|.+=.++..+ .-..+.+-.++++. +..-|..+..+|.-++.... +..... ...++..+..|++++
T Consensus 327 ~~A~~~lDrlA~~L~g~~v~--p~~~~~l~~~l~S~-~w~~R~AaL~Als~i~EGc~-~~m~~~l~~Il~~Vl~~l~Dph 402 (1075)
T KOG2171|consen 327 RAAEQALDRLALHLGGKQVL--PPLFEALEAMLQST-EWKERHAALLALSVIAEGCS-DVMIGNLPKILPIVLNGLNDPH 402 (1075)
T ss_pred HHHHHHHHHHHhcCChhheh--HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHcccH-HHHHHHHHHHHHHHHhhcCCCC
Confidence 44566666666654443322 34566777788877 77888888888887776432 222223 577888888899999
Q ss_pred cHHHHHHHHHHHHHhcC-CCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCC-h-hhHHHHHhcCCcHHHHH
Q 044293 148 NPAGHHLLSSLAELVQF-HGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARF-D-EGMIALTKTDQIVSLMV 224 (236)
Q Consensus 148 ~~~~~~a~~aL~~L~~~-~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~-~-~~~~~i~~~g~~i~~lv 224 (236)
++++..|+.+++.++.+ ...-+.-...-++|.|+..+.+..++.++.+|+.+|.|.+.. + +.-..... ++..+++
T Consensus 403 prVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd--~lm~~~l 480 (1075)
T KOG2171|consen 403 PRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLD--GLMEKKL 480 (1075)
T ss_pred HHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHH--HHHHHHH
Confidence 99999999999999985 344555556778889999998876678999999999988753 2 33333433 3556344
Q ss_pred H-HhhCCccccc
Q 044293 225 D-VLKGRSMFSK 235 (236)
Q Consensus 225 ~-~l~~~~~~~k 235 (236)
. +++++++.-|
T Consensus 481 ~~L~~~~~~~v~ 492 (1075)
T KOG2171|consen 481 LLLLQSSKPYVQ 492 (1075)
T ss_pred HHHhcCCchhHH
Confidence 4 4456665544
No 72
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.96 E-value=2.1e-05 Score=44.96 Aligned_cols=40 Identities=23% Similarity=0.247 Sum_probs=36.0
Q ss_pred CchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcc
Q 044293 82 PDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAM 122 (236)
Q Consensus 82 ~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~ 122 (236)
++++..+.+.|++++|+.+++++ +++++..++++|.|++.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~-~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSE-DEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHcC
Confidence 45788888999999999999987 89999999999999973
No 73
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.95 E-value=9e-05 Score=64.90 Aligned_cols=198 Identities=13% Similarity=0.098 Sum_probs=139.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCch-hHHhhhcccHHHHHHHHhccC
Q 044293 27 KALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDL-KQSLASMETIYRLNWIIQSSS 105 (236)
Q Consensus 27 ~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~-~~~i~~~g~i~~L~~lL~~~~ 105 (236)
.++..|..+++.-.-.|.-+... .+++.|+++|+.++..+..-+...++|+...=.| +..+.+.|.|..|+.++.+.
T Consensus 408 a~~l~LkS~SrSV~~LRTgL~d~-~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK- 485 (743)
T COG5369 408 AIVLFLKSMSRSVTFLRTGLLDY-PIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK- 485 (743)
T ss_pred HHHHHHHHhhHHHHHHHhhcccc-chHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc-
Confidence 34455666766544567777887 9999999999998777777788888887665444 78888999999999999987
Q ss_pred CHHHHHHHHHHHHHhcccchh--hhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhc-CCC---ChHHHHHhC----
Q 044293 106 SQETVKLASSLICSLAMLDKN--KARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQ-FHG---NSTLAVRAG---- 175 (236)
Q Consensus 106 ~~~~~~~a~~~L~~Ls~~~~~--~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~-~~~---~~~~~~~~g---- 175 (236)
|...+.+..|.|.++.....+ +-++...-++..++.+..++.-.++..++..|+|++- +.. .+.-+.+..
T Consensus 486 DdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~y 565 (743)
T COG5369 486 DDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRY 565 (743)
T ss_pred hhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHH
Confidence 788999999999999887644 3344456678999999999988899999999999875 222 222222222
Q ss_pred cHHHHHHHhcCCChhhHHHHHHHHHHHHcCChhhHHH-HHhcCCcHHHHHHHh
Q 044293 176 AVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGMIA-LTKTDQIVSLMVDVL 227 (236)
Q Consensus 176 ~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~-i~~~g~~i~~lv~~l 227 (236)
....+++-+....+-++ +..+.+|.+++..+++... +.+...++..+-++|
T Consensus 566 lfk~l~~k~e~~np~~i-~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil 617 (743)
T COG5369 566 LFKRLIDKYEENNPMEI-LEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEIL 617 (743)
T ss_pred HHHHHHHHHHhcCchhh-hhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHH
Confidence 23456666655533344 4557777777765554444 444333444444444
No 74
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.74 E-value=0.0013 Score=49.20 Aligned_cols=128 Identities=14% Similarity=0.102 Sum_probs=99.9
Q ss_pred HHhhhcccHHHHHHHHhccCC-----HHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCC--CcHHHHHHHHHH
Q 044293 86 QSLASMETIYRLNWIIQSSSS-----QETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAP--SNPAGHHLLSSL 158 (236)
Q Consensus 86 ~~i~~~g~i~~L~~lL~~~~~-----~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~aL 158 (236)
..+++.||+..|++++.++.. .++..++..+...|..............+|..++.++... +..+.+.|+..|
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL 84 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL 84 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence 457789999999999998842 3777888999999988876666777789999999999865 467888999999
Q ss_pred HHHhcCCCChHHHH-HhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC--ChhhHHHHH
Q 044293 159 AELVQFHGNSTLAV-RAGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR--FDEGMIALT 214 (236)
Q Consensus 159 ~~L~~~~~~~~~~~-~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~--~~~~~~~i~ 214 (236)
-++..+....-..+ +.=-++.|+..|+.++ ++++.+++..+..|.. +++.|.++.
T Consensus 85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~~-~~iq~naiaLinAL~~kA~~~~r~~i~ 142 (160)
T PF11841_consen 85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVSN-QEIQTNAIALINALFLKADDSKRKEIA 142 (160)
T ss_pred HHHHhCCHHHHHHHhccCCHHHHHHHHHcCC-HHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 99988766644444 4455899999999874 8899999999987763 344555554
No 75
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.73 E-value=0.00023 Score=62.37 Aligned_cols=173 Identities=9% Similarity=-0.013 Sum_probs=128.2
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCch--h
Q 044293 8 ETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDL--K 85 (236)
Q Consensus 8 ~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~--~ 85 (236)
+..+-|++.|+.++..+..-++..+.++...-...+..|.+. |+|..|++++.+.|..+|.++.|++.++-.+.++ +
T Consensus 431 ~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~-~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ek 509 (743)
T COG5369 431 PIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEK-SIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEK 509 (743)
T ss_pred chHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHh-hHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhh
Confidence 356677888877665555556777777776544567888887 9999999999999999999999999998877654 5
Q ss_pred HHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccc-h---hhhhhcc----cCcHHHHHHhhcCCCcHHHHHHHHH
Q 044293 86 QSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLD-K---NKARFGV----AGTVQVLVKAVSAPSNPAGHHLLSS 157 (236)
Q Consensus 86 ~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~-~---~~~~i~~----~g~i~~Lv~lL~~~~~~~~~~a~~a 157 (236)
-.....-++..++.+.+.. +-.+++.+.-.|.|++-+. . .+.-+.+ .-....|++.+...+|-.....+-.
T Consensus 510 f~~Lakig~~kvl~~~NDp-c~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~~~yi 588 (743)
T COG5369 510 FKFLAKIGVEKVLSYTNDP-CFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILEGCYI 588 (743)
T ss_pred hhhHHhcCHHHHHHHhcCc-ccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhhhhHHH
Confidence 5666777899999999877 7889999999999997643 2 2332222 2356677777888888777777888
Q ss_pred HHHHhcCCCChHHHHH--hCcHHHHHH
Q 044293 158 LAELVQFHGNSTLAVR--AGAVSELIH 182 (236)
Q Consensus 158 L~~L~~~~~~~~~~~~--~g~i~~lv~ 182 (236)
|.+++..+++.++++. ...+..+-.
T Consensus 589 lv~~aa~d~~l~~~V~~q~~~L~~i~e 615 (743)
T COG5369 589 LVRNAACDDTLDYIVQSQEDMLDSIFE 615 (743)
T ss_pred HHHHHhccchHHHHHHhHHHHHHHHHH
Confidence 8888888887776553 344444333
No 76
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=97.70 E-value=0.012 Score=47.16 Aligned_cols=149 Identities=11% Similarity=0.051 Sum_probs=107.4
Q ss_pred HHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhcc---C-CHHHHHHHHHHHHHhcccch--hhhhhcccCcHHHHHH
Q 044293 68 RTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSS---S-SQETVKLASSLICSLAMLDK--NKARFGVAGTVQVLVK 141 (236)
Q Consensus 68 ~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~---~-~~~~~~~a~~~L~~Ls~~~~--~~~~i~~~g~i~~Lv~ 141 (236)
.=+|+..+-.++.||+.|..+.+...---|--+|..+ + .+-.+..+.++|..|...++ .-..+...++||..++
T Consensus 96 VcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLr 175 (293)
T KOG3036|consen 96 VCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLR 175 (293)
T ss_pred HHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHH
Confidence 3467777778999999999998765443444444432 1 35578889999999988764 3344456899999999
Q ss_pred hhcCCCcHHHHHHHHHHHHHhcCCCChHHHHH-h---C----cHHHHHHHhcCCChhhHHHHHHHHHHHHcCChhhHHHH
Q 044293 142 AVSAPSNPAGHHLLSSLAELVQFHGNSTLAVR-A---G----AVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGMIAL 213 (236)
Q Consensus 142 lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~-~---g----~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~i 213 (236)
.+..++...+..|.-.+..+-.++.+-.++++ . - .+..++.-+.+.....+.++++++...|+.++..|..+
T Consensus 176 ime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~aL 255 (293)
T KOG3036|consen 176 IMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAAL 255 (293)
T ss_pred HHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 99999988888888777777777776555543 1 2 23334444433334778899999999999999999887
Q ss_pred Hhc
Q 044293 214 TKT 216 (236)
Q Consensus 214 ~~~ 216 (236)
..+
T Consensus 256 ~~c 258 (293)
T KOG3036|consen 256 RSC 258 (293)
T ss_pred Hhh
Confidence 654
No 77
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.62 E-value=0.0011 Score=53.02 Aligned_cols=147 Identities=14% Similarity=0.042 Sum_probs=90.6
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhhhc
Q 044293 12 NCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASM 91 (236)
Q Consensus 12 ~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~ 91 (236)
.+...+.+....+...|+.++..++..-...-..+.+ ..+|.|+..+.++...+++.|..+|..+..+-.....+
T Consensus 57 ~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~--~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~--- 131 (228)
T PF12348_consen 57 AIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYAD--ILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI--- 131 (228)
T ss_dssp HHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHH--HHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH---
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHH--HHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH---
Confidence 3444444445557777888888887652222233343 58999999999988889999999998887754421111
Q ss_pred ccHHHHHHHHhccCCHHHHHHHHHHHHHhcccch-hhhhhcc----cCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCC
Q 044293 92 ETIYRLNWIIQSSSSQETVKLASSLICSLAMLDK-NKARFGV----AGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFH 165 (236)
Q Consensus 92 g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~----~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~ 165 (236)
.++.+....++. ++.++..++..|..+...-. ....+.. ...++.+.+.+.++++.+++.|-.++..+...-
T Consensus 132 -~~~~l~~~~~~K-n~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~ 208 (228)
T PF12348_consen 132 -LLEILSQGLKSK-NPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHF 208 (228)
T ss_dssp -HHHHHHHHTT-S--HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
Confidence 144555556666 89999999998887755432 2333333 347788888889999999999999998886543
No 78
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.60 E-value=0.0012 Score=58.36 Aligned_cols=160 Identities=21% Similarity=0.180 Sum_probs=115.2
Q ss_pred HHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChH-HHHHHH---HHHHhhCC
Q 044293 5 RVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPI-IRTLSL---SILLNLSL 80 (236)
Q Consensus 5 ~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~-~~~~a~---~~L~~l~~ 80 (236)
+..+.|+.++..+.++++..|..|+.-|..+..-.+. .-...- .|++..++..+.+..+. +.+-+. ..+..+..
T Consensus 247 d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~-~~l~~~-s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s 324 (675)
T KOG0212|consen 247 DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGR-DLLLYL-SGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVS 324 (675)
T ss_pred CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCc-chhhhh-hhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHh
Confidence 4567889999999999999999998888888765322 222223 37788888888766553 332222 12333333
Q ss_pred CCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHH
Q 044293 81 NPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAE 160 (236)
Q Consensus 81 ~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~ 160 (236)
.+..+..+--...+..+.+.+.++ ..+++..+..-+..|-...-++-........+.|++-|.+.++.+...++..+.+
T Consensus 325 ~~~~~~~id~~~ii~vl~~~l~~~-~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~ 403 (675)
T KOG0212|consen 325 SERLKEEIDYGSIIEVLTKYLSDD-REETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLAS 403 (675)
T ss_pred hhhhccccchHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHH
Confidence 333343444455788888899888 7999999988777776655555555568899999999999999999999999999
Q ss_pred HhcCCCC
Q 044293 161 LVQFHGN 167 (236)
Q Consensus 161 L~~~~~~ 167 (236)
+|.+++.
T Consensus 404 i~~s~~~ 410 (675)
T KOG0212|consen 404 ICSSSNS 410 (675)
T ss_pred HhcCccc
Confidence 9997655
No 79
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=97.56 E-value=0.0016 Score=52.55 Aligned_cols=195 Identities=13% Similarity=0.082 Sum_probs=126.6
Q ss_pred CHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHh-------hccCCC--h---HHHHHHHHHHHhhCCCCchhHHh
Q 044293 21 SYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLG-------LSKSSS--P---IIRTLSLSILLNLSLNPDLKQSL 88 (236)
Q Consensus 21 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~-------lL~~~~--~---~~~~~a~~~L~~l~~~~~~~~~i 88 (236)
+++.|+.|+..|..--...++....+-...|.+..|++ .++++. + .-.-+|+..+-.+|.||+.|..+
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 56778888777766555445555556666577766654 233321 2 22335666666789999999999
Q ss_pred hhcccHHHHHHHHhccC----CHHHHHHHHHHHHHhcccch--hhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHh
Q 044293 89 ASMETIYRLNWIIQSSS----SQETVKLASSLICSLAMLDK--NKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELV 162 (236)
Q Consensus 89 ~~~g~i~~L~~lL~~~~----~~~~~~~a~~~L~~Ls~~~~--~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~ 162 (236)
.+....--|.-+|+... -+..|....+++..|...++ .-.-+.+.+.+|..++.+..++.-.+..|.-.+..+-
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL 167 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL 167 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 98876555555555431 24577789999999988553 3344457899999999999998776666666666655
Q ss_pred cCCCChHHHH-------H-hCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChhhHHHHHh
Q 044293 163 QFHGNSTLAV-------R-AGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGMIALTK 215 (236)
Q Consensus 163 ~~~~~~~~~~-------~-~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~ 215 (236)
.++.+-+.++ . ..++..++.-+....++.+.++.+++-.-|+.++..|+.+.+
T Consensus 168 ~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~ 228 (262)
T PF04078_consen 168 LDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQ 228 (262)
T ss_dssp HSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHH
T ss_pred cchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHH
Confidence 5544333322 2 345555666554433578999999999999999999998875
No 80
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.54 E-value=0.0012 Score=59.46 Aligned_cols=173 Identities=10% Similarity=0.066 Sum_probs=124.6
Q ss_pred cCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHH--hhh---cccHHHHHHHHhccCCHHHHHHHHHHHHHhcccc
Q 044293 50 DGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQS--LAS---METIYRLNWIIQSSSSQETVKLASSLICSLAMLD 124 (236)
Q Consensus 50 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~--i~~---~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~ 124 (236)
+.++|.|..+|.+++...++-|..+|..++.+....-. ... .-.||.++++.++. ++.+|.+|..++--.-...
T Consensus 127 pelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~-spkiRs~A~~cvNq~i~~~ 205 (885)
T KOG2023|consen 127 PELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHP-SPKIRSHAVGCVNQFIIIQ 205 (885)
T ss_pred hhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCC-ChhHHHHHHhhhhheeecC
Confidence 35678889999998888899999999999887654221 111 34899999999999 8999999999877554433
Q ss_pred hhhhhhcc-cCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHH
Q 044293 125 KNKARFGV-AGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLL 203 (236)
Q Consensus 125 ~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l 203 (236)
. ...+.. -.+++.|..+-.+.++.++++.|.+|..|......|-.=--.+++..+++.-++.+ +++.-.|+.-...+
T Consensus 206 ~-qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~d-E~VALEACEFwla~ 283 (885)
T KOG2023|consen 206 T-QALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVD-ENVALEACEFWLAL 283 (885)
T ss_pred c-HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcc-hhHHHHHHHHHHHH
Confidence 2 223322 46777888888888999999999999998875544433223567777888777775 66878889999999
Q ss_pred cCChhhHHHHHhcC-CcHHHHHH
Q 044293 204 ARFDEGMIALTKTD-QIVSLMVD 225 (236)
Q Consensus 204 ~~~~~~~~~i~~~g-~~i~~lv~ 225 (236)
|..+..+..+...= .+||.|++
T Consensus 284 aeqpi~~~~L~p~l~kliPvLl~ 306 (885)
T KOG2023|consen 284 AEQPICKEVLQPYLDKLIPVLLS 306 (885)
T ss_pred hcCcCcHHHHHHHHHHHHHHHHc
Confidence 99886665554321 13444444
No 81
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=97.53 E-value=0.00094 Score=51.99 Aligned_cols=126 Identities=11% Similarity=0.060 Sum_probs=95.5
Q ss_pred CCChHHHHHHHHHHHhhCCCCchhHHhhh----------------cccHHHHHHHHhcc-----CCHHHHHHHHHHHHHh
Q 044293 62 SSSPIIRTLSLSILLNLSLNPDLKQSLAS----------------METIYRLNWIIQSS-----SSQETVKLASSLICSL 120 (236)
Q Consensus 62 ~~~~~~~~~a~~~L~~l~~~~~~~~~i~~----------------~g~i~~L~~lL~~~-----~~~~~~~~a~~~L~~L 120 (236)
.+.......++.+|.|++..+.....+.+ ...+..|++.+-.| +..+-..+.+.++.|+
T Consensus 6 ~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~Nl 85 (192)
T PF04063_consen 6 DPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANL 85 (192)
T ss_pred CCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHh
Confidence 33445567788899999998888664432 23677888877662 1345667899999999
Q ss_pred cccchhhhhhcc--cCc--HHHHHHhhcCCCcHHHHHHHHHHHHHhcCCCChHHHHH---hCcHHHHHHHhcCC
Q 044293 121 AMLDKNKARFGV--AGT--VQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVR---AGAVSELIHLIGST 187 (236)
Q Consensus 121 s~~~~~~~~i~~--~g~--i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~---~g~i~~lv~ll~~~ 187 (236)
+..++.|..+.+ .+. +..|+....+.|..-+..++.+|.|+|...+....+.. .+.+|.++--|..+
T Consensus 86 S~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLaGp 159 (192)
T PF04063_consen 86 SQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLAGP 159 (192)
T ss_pred cCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhccCC
Confidence 999999999986 455 77888888888777778999999999998888877765 46778777777643
No 82
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.52 E-value=0.00034 Score=42.79 Aligned_cols=55 Identities=16% Similarity=0.005 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHh
Q 044293 65 PIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSL 120 (236)
Q Consensus 65 ~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~L 120 (236)
+.+|..|+.+|.+++........-.....++.|+.+|+++ +++++..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~-~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDD-DDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSS-SHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHhcC
Confidence 4678999999999887776654445678999999999888 789999999999865
No 83
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=97.50 E-value=0.0023 Score=51.64 Aligned_cols=148 Identities=18% Similarity=0.129 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCC-----hHHHHHHHHHHHhhCCCCch--hHHhhhcccHH
Q 044293 23 EDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSS-----PIIRTLSLSILLNLSLNPDL--KQSLASMETIY 95 (236)
Q Consensus 23 ~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~-----~~~~~~a~~~L~~l~~~~~~--~~~i~~~g~i~ 95 (236)
...+.|+..++.++.+ ++.|..|.++ .+.-.|-.+|+..+ +.+|-.++++++.+.+.++. -..+.+.+.+|
T Consensus 65 nRVcnaLaLlQ~vAsh-petr~~Fl~a-~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiip 142 (262)
T PF04078_consen 65 NRVCNALALLQCVASH-PETRMPFLKA-HIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIP 142 (262)
T ss_dssp HHHHHHHHHHHHHHH--TTTHHHHHHT-TGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHH
T ss_pred HHHHHHHHHHHHHHcC-hHHHHHHHHc-CchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHH
Confidence 3456788889999986 7899999998 88878888887543 34577888999999886543 55566889999
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhc-------c-cCcHHHHHH-hhcCCCcHHHHHHHHHHHHHhcCCC
Q 044293 96 RLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFG-------V-AGTVQVLVK-AVSAPSNPAGHHLLSSLAELVQFHG 166 (236)
Q Consensus 96 ~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~-------~-~g~i~~Lv~-lL~~~~~~~~~~a~~aL~~L~~~~~ 166 (236)
.-++.++.| +.-.+.-|+-++..+-.++....-+. . ..++..++. +..+++++..++.+++-..||.++.
T Consensus 143 lcLr~me~G-selSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnpr 221 (262)
T PF04078_consen 143 LCLRIMEFG-SELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPR 221 (262)
T ss_dssp HHHHHHHHS--HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTT
T ss_pred HHHHHHHhc-cHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHH
Confidence 999999999 77788888888877776665444433 1 333444443 3356788999999999999999999
Q ss_pred ChHHHHH
Q 044293 167 NSTLAVR 173 (236)
Q Consensus 167 ~~~~~~~ 173 (236)
.|..+.+
T Consensus 222 ar~aL~~ 228 (262)
T PF04078_consen 222 AREALRQ 228 (262)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988764
No 84
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.49 E-value=0.0015 Score=57.61 Aligned_cols=175 Identities=19% Similarity=0.190 Sum_probs=120.0
Q ss_pred HHHHHHHHhcCChHHHHHHHhccCcHHHHHhhc----------cCCChHHHHHHHHHHHhhCCCCc-hhHHhhhcccHHH
Q 044293 28 ALQTLASITRVSPQYRSLLAQTDGAISTLLGLS----------KSSSPIIRTLSLSILLNLSLNPD-LKQSLASMETIYR 96 (236)
Q Consensus 28 a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL----------~~~~~~~~~~a~~~L~~l~~~~~-~~~~i~~~g~i~~ 96 (236)
|+.+|+.++++ +.+...+... .++..|..+- ...++++...|+.+|+|+-.+.. .|..+.+.|+.+.
T Consensus 1 ~L~~LRiLsRd-~~~~~~l~~~-~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~ 78 (446)
T PF10165_consen 1 CLETLRILSRD-PTGLDPLFTE-EGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEK 78 (446)
T ss_pred CHHHHHHHccC-cccchhhccH-HHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHH
Confidence 46678888887 5566666665 6788888775 23467889999999999877654 5888889999999
Q ss_pred HHHHHhccC----CHHHHHHHHHHHHHhccc-chhhhhhcc-cCcHHHHHHhhcC--------C---------CcHHHHH
Q 044293 97 LNWIIQSSS----SQETVKLASSLICSLAML-DKNKARFGV-AGTVQVLVKAVSA--------P---------SNPAGHH 153 (236)
Q Consensus 97 L~~lL~~~~----~~~~~~~a~~~L~~Ls~~-~~~~~~i~~-~g~i~~Lv~lL~~--------~---------~~~~~~~ 153 (236)
++..|+... +.+..-...+.|+-++.. .+.+..+.+ .+++..++..|.. . +......
T Consensus 79 l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~E 158 (446)
T PF10165_consen 79 LCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSE 158 (446)
T ss_pred HHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHH
Confidence 999999752 567778899999887754 455655554 6888888876632 0 1234578
Q ss_pred HHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCC--------ChhhHHHHHHHHHHHHc
Q 044293 154 LLSSLAELVQFHGNSTLAVRAGAVSELIHLIGST--------EAEDLAGTSLAVLNLLA 204 (236)
Q Consensus 154 a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~--------~~~~~~~~a~~~L~~l~ 204 (236)
+++.++|+..+......-.....++.++.++..- .......+++.+|.|+-
T Consensus 159 iLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlp 217 (446)
T PF10165_consen 159 ILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLP 217 (446)
T ss_pred HHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCC
Confidence 8899999987544332212244555555544311 12345678888888873
No 85
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.49 E-value=0.00049 Score=42.09 Aligned_cols=55 Identities=16% Similarity=0.150 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhh
Q 044293 22 YEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNL 78 (236)
Q Consensus 22 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l 78 (236)
+.+|..|+++|..++...++.-+.+.. .+++.|+.+|+++++++|..|+.+|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~--~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLP--ELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHH--HHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHH--HHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 468899999999988776665555553 6899999999999999999999999875
No 86
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.48 E-value=0.011 Score=51.68 Aligned_cols=24 Identities=8% Similarity=0.027 Sum_probs=13.2
Q ss_pred HHHHHhhccCCChHHHHHHHHHHH
Q 044293 53 ISTLLGLSKSSSPIIRTLSLSILL 76 (236)
Q Consensus 53 i~~Lv~lL~~~~~~~~~~a~~~L~ 76 (236)
+..|+..|...++.++..++.+|.
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg 111 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALG 111 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHh
Confidence 555555555555555555555554
No 87
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.47 E-value=0.0076 Score=55.80 Aligned_cols=146 Identities=18% Similarity=0.190 Sum_probs=109.9
Q ss_pred hHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCc
Q 044293 4 PRVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPD 83 (236)
Q Consensus 4 ~~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~ 83 (236)
++++..-+.+++...+.+.+.++-....|..++..+|+ +++. .+..+..=+.++++.+|-.|++++.-+--
T Consensus 51 ~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~--~~lL----avNti~kDl~d~N~~iR~~AlR~ls~l~~--- 121 (757)
T COG5096 51 EDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPE--LALL----AVNTIQKDLQDPNEEIRGFALRTLSLLRV--- 121 (757)
T ss_pred CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHH--HHHH----HHHHHHhhccCCCHHHHHHHHHHHHhcCh---
Confidence 44555666777777777777777777777777776552 2222 46777777888999999888887765422
Q ss_pred hhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhc
Q 044293 84 LKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQ 163 (236)
Q Consensus 84 ~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~ 163 (236)
..+. ...++++.+++.++ ++.+|+.|+-++.++=..+ +..+.+.|.+..+..++.+.+|.+..+|+.+|..+..
T Consensus 122 --~el~-~~~~~~ik~~l~d~-~ayVRk~Aalav~kly~ld--~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 122 --KELL-GNIIDPIKKLLTDP-HAYVRKTAALAVAKLYRLD--KDLYHELGLIDILKELVADSDPIVIANALASLAEIDP 195 (757)
T ss_pred --HHHH-HHHHHHHHHHccCC-cHHHHHHHHHHHHHHHhcC--HhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence 2222 34788999999998 8999999999999987655 5566678999999999999999999999999988765
Q ss_pred C
Q 044293 164 F 164 (236)
Q Consensus 164 ~ 164 (236)
.
T Consensus 196 e 196 (757)
T COG5096 196 E 196 (757)
T ss_pred h
Confidence 4
No 88
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.0042 Score=58.89 Aligned_cols=140 Identities=16% Similarity=0.193 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHhc---cCcHHHHHhhccC-CChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHH
Q 044293 23 EDQQKALQTLASITRVSPQYRSLLAQT---DGAISTLLGLSKS-SSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLN 98 (236)
Q Consensus 23 ~~~~~a~~~L~~l~~~~~~~~~~i~~~---~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~ 98 (236)
+....++.+|+++...+++....|... -|-++.++.++.. +++.++..++.++.-+..+.+.-..+++.|.+..|+
T Consensus 1740 ~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL 1819 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLL 1819 (2235)
T ss_pred HHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHH
Confidence 345679999999999988544433322 2667777777764 678999999999988888888888899999999999
Q ss_pred HHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCC-CcHHHHHHHHHHHHHhcC
Q 044293 99 WIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAP-SNPAGHHLLSSLAELVQF 164 (236)
Q Consensus 99 ~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~~L~~~ 164 (236)
.+|.+ -+..++.+..+|..|+.+.+.-..-.+.|++..+.+++... +++.+..++..+..+...
T Consensus 1820 ~lLHS--~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Ad 1884 (2235)
T KOG1789|consen 1820 TLLHS--QPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQAD 1884 (2235)
T ss_pred HHHhc--ChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhc
Confidence 99986 48999999999999999987766666789999898888654 566777888888888763
No 89
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.42 E-value=0.012 Score=52.08 Aligned_cols=208 Identities=18% Similarity=0.207 Sum_probs=135.3
Q ss_pred HhHHHHHHHHh----------cCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCC-----ChHHHHHH
Q 044293 7 RETINNCVSRS----------QSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSS-----SPIIRTLS 71 (236)
Q Consensus 7 ~~~i~~lv~~L----------~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~-----~~~~~~~a 71 (236)
.+.+..|.++- ...++++..+|+++|.|....++..|+.+.+. |+.+.++..|+.. +.+..-..
T Consensus 21 ~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~-~~~~~l~~~Lk~~~~~~~~~d~~Fl~ 99 (446)
T PF10165_consen 21 EEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDL-GLAEKLCERLKNYSDSSQPSDVEFLD 99 (446)
T ss_pred HHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHc-CcHHHHHHHHHcccccCCChhHHHHH
Confidence 45666666665 24578889999999999999999999999998 9999999999876 56777778
Q ss_pred HHHHHhhCCC-CchhHHhh-hcccHHHHHHHHhcc----------------CCHHHHHHHHHHHHHhcccchhhhhhccc
Q 044293 72 LSILLNLSLN-PDLKQSLA-SMETIYRLNWIIQSS----------------SSQETVKLASSLICSLAMLDKNKARFGVA 133 (236)
Q Consensus 72 ~~~L~~l~~~-~~~~~~i~-~~g~i~~L~~lL~~~----------------~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~ 133 (236)
.++|+-++.. ++.+..++ +.+++..++..|... .+.+....++.+++|+.........-...
T Consensus 100 ~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~~~~ 179 (446)
T PF10165_consen 100 SRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPEEFS 179 (446)
T ss_pred HHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccchhhh
Confidence 8888766654 45676666 568888888877531 02344556888899997765322221235
Q ss_pred CcHHHHHHhhcCC---------CcHHHHHHHHHHHHHhcCC-C-------ChHHH----HHhCcHHHHHHHhcCC----C
Q 044293 134 GTVQVLVKAVSAP---------SNPAGHHLLSSLAELVQFH-G-------NSTLA----VRAGAVSELIHLIGST----E 188 (236)
Q Consensus 134 g~i~~Lv~lL~~~---------~~~~~~~a~~aL~~L~~~~-~-------~~~~~----~~~g~i~~lv~ll~~~----~ 188 (236)
+.++.|+.++..- ......+++.+|.++-... . +.... .....+..++++|... .
T Consensus 180 ~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~ 259 (446)
T PF10165_consen 180 PSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYE 259 (446)
T ss_pred HHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcC
Confidence 6677777666532 1235567777777662210 0 00000 1123466677777531 1
Q ss_pred ---hhhHHHHHHHHHHHHcCC-hhhHHHHHh
Q 044293 189 ---AEDLAGTSLAVLNLLARF-DEGMIALTK 215 (236)
Q Consensus 189 ---~~~~~~~a~~~L~~l~~~-~~~~~~i~~ 215 (236)
..+.....+.+|..++.. ...|+.+..
T Consensus 260 ~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~ 290 (446)
T PF10165_consen 260 ALKLDELLTPLLTLLTRLARAAREVRKYLRA 290 (446)
T ss_pred cccchhhHhhHHHHHHHHHHhcHHHHHHHHH
Confidence 124556777888888865 455555544
No 90
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=97.42 E-value=0.0043 Score=49.51 Aligned_cols=149 Identities=18% Similarity=0.130 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCC-----ChHHHHHHHHHHHhhCCCCch--hHHhhhcccH
Q 044293 22 YEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSS-----SPIIRTLSLSILLNLSLNPDL--KQSLASMETI 94 (236)
Q Consensus 22 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~-----~~~~~~~a~~~L~~l~~~~~~--~~~i~~~g~i 94 (236)
....+.|+..|+.++.+ ++.|..|.++ -+--.|-.+|+.. .+-.|-.+++++..+.+.++- -..+...+.+
T Consensus 93 snRVcnaL~LlQcvASH-pdTr~~FL~A-~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIV 170 (293)
T KOG3036|consen 93 SNRVCNALALLQCVASH-PDTRRAFLRA-HIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIV 170 (293)
T ss_pred cchHHHHHHHHHHHhcC-cchHHHHHHc-cChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhH
Confidence 33556788888998887 7899999987 5444455666543 345677889999999887653 4455688999
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhc-------c-cCcHHHHH-HhhcCCCcHHHHHHHHHHHHHhcCC
Q 044293 95 YRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFG-------V-AGTVQVLV-KAVSAPSNPAGHHLLSSLAELVQFH 165 (236)
Q Consensus 95 ~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~-------~-~g~i~~Lv-~lL~~~~~~~~~~a~~aL~~L~~~~ 165 (236)
|..++.+..| ++..+.-|+-++-.+-.++..-.-+- . .-.+..++ ++...++++..++++++..+||..+
T Consensus 171 PlCLrime~G-SelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp 249 (293)
T KOG3036|consen 171 PLCLRIMESG-SELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP 249 (293)
T ss_pred HHHHHHHhcc-cHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH
Confidence 9999999999 78888888888888777664433322 1 22333333 3334578899999999999999999
Q ss_pred CChHHHHH
Q 044293 166 GNSTLAVR 173 (236)
Q Consensus 166 ~~~~~~~~ 173 (236)
..|..+..
T Consensus 250 rar~aL~~ 257 (293)
T KOG3036|consen 250 RARAALRS 257 (293)
T ss_pred HHHHHHHh
Confidence 88877653
No 91
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.42 E-value=0.0083 Score=50.88 Aligned_cols=217 Identities=14% Similarity=0.127 Sum_probs=150.9
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHH-----HHHHHhc-cCcHHHHHhhccCCChHHHHHHHHHHHhhCC
Q 044293 7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQY-----RSLLAQT-DGAISTLLGLSKSSSPIIRTLSLSILLNLSL 80 (236)
Q Consensus 7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~-----~~~i~~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~ 80 (236)
.+.+..|+..|..-+-+.+..++....++.....+. ...+... +.++..|+.--. ++++--.+-..|..+..
T Consensus 75 ~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~--~~dial~~g~mlRec~k 152 (335)
T PF08569_consen 75 SDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE--NPDIALNCGDMLRECIK 152 (335)
T ss_dssp HTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG--STTTHHHHHHHHHHHTT
T ss_pred hCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc--CccccchHHHHHHHHHh
Confidence 345667777777777778887877777777653322 2344444 445555544433 45555677788899999
Q ss_pred CCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHH-hcccchhhhhhcc---cCcHHHHHHhhcCCCcHHHHHHHH
Q 044293 81 NPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICS-LAMLDKNKARFGV---AGTVQVLVKAVSAPSNPAGHHLLS 156 (236)
Q Consensus 81 ~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~-Ls~~~~~~~~i~~---~g~i~~Lv~lL~~~~~~~~~~a~~ 156 (236)
++.-...+.....+..+.+..+.+ +-++...|..++.. |+.++..-..+.. ..++...-++|.++|.-+++.++.
T Consensus 153 ~e~l~~~iL~~~~f~~ff~~~~~~-~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslk 231 (335)
T PF08569_consen 153 HESLAKIILYSECFWKFFKYVQLP-NFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLK 231 (335)
T ss_dssp SHHHHHHHHTSGGGGGHHHHTTSS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHH
T ss_pred hHHHHHHHhCcHHHHHHHHHhcCC-ccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHH
Confidence 988777777788999999999988 89999999999996 4555544444443 466778889999999999999999
Q ss_pred HHHHHhcCCCChHHHHH----hCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChhh---HHHHHhcCCcHHHHHHHhhC
Q 044293 157 SLAELVQFHGNSTLAVR----AGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEG---MIALTKTDQIVSLMVDVLKG 229 (236)
Q Consensus 157 aL~~L~~~~~~~~~~~~----~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~---~~~i~~~g~~i~~lv~~l~~ 229 (236)
.|+.+-..+.|...|.+ ..-+..++.+|++.+ ..++-.|.-++.....+|.. -..|.... =..|++.+.+
T Consensus 232 LL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~s-k~Iq~eAFhvFKvFVANp~K~~~I~~iL~~N--r~kLl~fl~~ 308 (335)
T PF08569_consen 232 LLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKS-KNIQFEAFHVFKVFVANPNKPPPIVDILIKN--REKLLRFLKD 308 (335)
T ss_dssp HHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHT--HHHHHHHHHT
T ss_pred HHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcc-hhhhHHHHHHHHHHHhCCCCChHHHHHHHHH--HHHHHHHHHh
Confidence 99999999999877654 345778899999874 77998999999887665532 22222222 2677777765
No 92
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.41 E-value=0.0011 Score=45.97 Aligned_cols=66 Identities=17% Similarity=0.333 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhc--cCCChHHHHHHHHHHHhhCCCC-chhHHhhhc
Q 044293 25 QQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLS--KSSSPIIRTLSLSILLNLSLNP-DLKQSLASM 91 (236)
Q Consensus 25 ~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL--~~~~~~~~~~a~~~L~~l~~~~-~~~~~i~~~ 91 (236)
+...++.|.++++.++.++..+.+. |+||.+++.- +..+|-+++.|+.++.|++... +|+..|.+.
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~-~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVREL-GGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHc-CChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 4567888999999999999999998 9999999874 4567999999999999988764 677777643
No 93
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.41 E-value=0.0054 Score=57.93 Aligned_cols=194 Identities=15% Similarity=0.131 Sum_probs=139.5
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHH--hhCCCCchh
Q 044293 8 ETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILL--NLSLNPDLK 85 (236)
Q Consensus 8 ~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~--~l~~~~~~~ 85 (236)
+.+|..++.|- ++--|..|+..|..+..-.+=.-..-..- |++|..++||++...+++ -.+..++ -|+.++..+
T Consensus 472 eQLPiVLQVLL--SQvHRlRAL~LL~RFLDlGpWAV~LaLsV-GIFPYVLKLLQS~a~ELr-piLVFIWAKILAvD~SCQ 547 (1387)
T KOG1517|consen 472 EQLPIVLQVLL--SQVHRLRALVLLARFLDLGPWAVDLALSV-GIFPYVLKLLQSSARELR-PILVFIWAKILAVDPSCQ 547 (1387)
T ss_pred HhcchHHHHHH--HHHHHHHHHHHHHHHhccchhhhhhhhcc-chHHHHHHHhccchHhhh-hhHHHHHHHHHhcCchhH
Confidence 34455555442 12245567777777765544222222344 999999999999888875 4455555 378888888
Q ss_pred HHhhhcccHHHHHHHHhccC--CHHHHHHHHHHHHHhcccc-hhhhhhcccCcHHHHHHhhcCC-CcHHHHHHHHHHHHH
Q 044293 86 QSLASMETIYRLNWIIQSSS--SQETVKLASSLICSLAMLD-KNKARFGVAGTVQVLVKAVSAP-SNPAGHHLLSSLAEL 161 (236)
Q Consensus 86 ~~i~~~g~i~~L~~lL~~~~--~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~~L 161 (236)
..+++.+|-..+++.|..+. +++-+.-|+-+|.-++.+- -......+.+.+..-+..|.++ .+-.+..++.+|..|
T Consensus 548 ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~L 627 (1387)
T KOG1517|consen 548 ADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRL 627 (1387)
T ss_pred HHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHH
Confidence 88888878888888888732 4577777888888777653 3455566788899889999886 456778888899888
Q ss_pred hcCC-CChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCC
Q 044293 162 VQFH-GNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARF 206 (236)
Q Consensus 162 ~~~~-~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~ 206 (236)
=.+. +.|-.-++.++...|+.+|.++ .++++-.|+-+|.-+..+
T Consensus 628 W~d~~~Arw~G~r~~AhekL~~~LsD~-vpEVRaAAVFALgtfl~~ 672 (1387)
T KOG1517|consen 628 WEDYDEARWSGRRDNAHEKLILLLSDP-VPEVRAAAVFALGTFLSN 672 (1387)
T ss_pred hhhcchhhhccccccHHHHHHHHhcCc-cHHHHHHHHHHHHHHhcc
Confidence 7754 5555567789999999999987 488998888888877653
No 94
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.35 E-value=0.0054 Score=53.48 Aligned_cols=90 Identities=14% Similarity=-0.044 Sum_probs=70.0
Q ss_pred CcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhh
Q 044293 51 GAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARF 130 (236)
Q Consensus 51 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i 130 (236)
+..+.|+.+|.+.++.++..++.++.. ...+..+.+...|++. ++.++..|+.+|..+-.
T Consensus 117 ~a~~~L~~~L~~~~p~vR~aal~al~~-----------r~~~~~~~L~~~L~d~-d~~Vra~A~raLG~l~~-------- 176 (410)
T TIGR02270 117 QAEPWLEPLLAASEPPGRAIGLAALGA-----------HRHDPGPALEAALTHE-DALVRAAALRALGELPR-------- 176 (410)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHh-----------hccChHHHHHHHhcCC-CHHHHHHHHHHHHhhcc--------
Confidence 557888899999999998887777766 1223456888888877 89999999999987653
Q ss_pred cccCcHHHHHHhhcCCCcHHHHHHHHHHHHHh
Q 044293 131 GVAGTVQVLVKAVSAPSNPAGHHLLSSLAELV 162 (236)
Q Consensus 131 ~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~ 162 (236)
...++.|...+.+.++.++..|+.++..+.
T Consensus 177 --~~a~~~L~~al~d~~~~VR~aA~~al~~lG 206 (410)
T TIGR02270 177 --RLSESTLRLYLRDSDPEVRFAALEAGLLAG 206 (410)
T ss_pred --ccchHHHHHHHcCCCHHHHHHHHHHHHHcC
Confidence 355677888888889999988888886653
No 95
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.0058 Score=50.96 Aligned_cols=176 Identities=13% Similarity=0.115 Sum_probs=128.0
Q ss_pred cHHHHHhhccCCChHHHHHHHHHHHhhCCC-Cch----hHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchh
Q 044293 52 AISTLLGLSKSSSPIIRTLSLSILLNLSLN-PDL----KQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKN 126 (236)
Q Consensus 52 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-~~~----~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~ 126 (236)
..|.|-.=|..++..+...++.-+..+-.+ +.| ...+++.|.++.+++.+-.. +.++-..|...|..++..+..
T Consensus 83 lmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgge-ddeVAkAAiesikrialfpaa 161 (524)
T KOG4413|consen 83 LMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGE-DDEVAKAAIESIKRIALFPAA 161 (524)
T ss_pred hhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCC-cHHHHHHHHHHHHHHHhcHHH
Confidence 344444335566667776677655544333 322 33455889999999999877 889999999999999999988
Q ss_pred hhhhcccCcHHHHH--HhhcCCCcHHHHHHHHHHHHHhc-CCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHH
Q 044293 127 KARFGVAGTVQVLV--KAVSAPSNPAGHHLLSSLAELVQ-FHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLL 203 (236)
Q Consensus 127 ~~~i~~~g~i~~Lv--~lL~~~~~~~~~~a~~aL~~L~~-~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l 203 (236)
...+.+......+- .+-...|+-++......+..+.+ +++.....-..|.+..|..-|+...+.-+.-+|+.....|
T Consensus 162 leaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteL 241 (524)
T KOG4413|consen 162 LEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTEL 241 (524)
T ss_pred HHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHH
Confidence 88888766555443 33344555566666666666655 6666666667899999998888754456678999999999
Q ss_pred cCChhhHHHHHhcCCcHHHHHHHhhC
Q 044293 204 ARFDEGMIALTKTDQIVSLMVDVLKG 229 (236)
Q Consensus 204 ~~~~~~~~~i~~~g~~i~~lv~~l~~ 229 (236)
+....+|+-+.++| +|..+..++.+
T Consensus 242 aeteHgreflaQeg-lIdlicnIIsG 266 (524)
T KOG4413|consen 242 AETEHGREFLAQEG-LIDLICNIISG 266 (524)
T ss_pred HHHhhhhhhcchhh-HHHHHHHHhhC
Confidence 99999999888887 68999988875
No 96
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.31 E-value=0.019 Score=51.35 Aligned_cols=205 Identities=11% Similarity=0.005 Sum_probs=117.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHH--HHHhhCCCCchhH
Q 044293 9 TINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLS--ILLNLSLNPDLKQ 86 (236)
Q Consensus 9 ~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~--~L~~l~~~~~~~~ 86 (236)
..+.+.+.+.......+..+...+..+..+. .-+.+.+. +.+..|.....+.....++.+.. ...++..-.
T Consensus 135 ~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~--~i~~~~~~-~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg---- 207 (569)
T KOG1242|consen 135 VLELLLELLTSTKIAERAGAAYGLAGLVNGL--GIESLKEF-GFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG---- 207 (569)
T ss_pred HHHHHHHHhccccHHHHhhhhHHHHHHHcCc--HHhhhhhh-hHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC----
Confidence 3344444444445555555555565555542 23444554 66666666655543333222111 111111101
Q ss_pred HhhhcccHHHHHHHHhccC--CHHHHHHHHHHHHHh---cccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHH
Q 044293 87 SLASMETIYRLNWIIQSSS--SQETVKLASSLICSL---AMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAEL 161 (236)
Q Consensus 87 ~i~~~g~i~~L~~lL~~~~--~~~~~~~a~~~L~~L---s~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L 161 (236)
...+...++.+-.+|.+.. ...++..|..+...+ ......+ -.+|.++.-+....=+.+..++..|..+
T Consensus 208 ~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK------~llpsll~~l~~~kWrtK~aslellg~m 281 (569)
T KOG1242|consen 208 PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVK------LLLPSLLGSLLEAKWRTKMASLELLGAM 281 (569)
T ss_pred CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhh------HhhhhhHHHHHHHhhhhHHHHHHHHHHH
Confidence 2224555666666665431 456666554444433 2222222 2344444444333335667888888888
Q ss_pred hcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChhhHHHHHhcCCcHHHHHHHhhCCc
Q 044293 162 VQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGMIALTKTDQIVSLMVDVLKGRS 231 (236)
Q Consensus 162 ~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~~i~~lv~~l~~~~ 231 (236)
..+-...-...-..++|.+.+.|-++ ++++++.+..+|..++.--++-+ |-. ++|.|++.+.+.+
T Consensus 282 ~~~ap~qLs~~lp~iiP~lsevl~DT-~~evr~a~~~~l~~~~svidN~d-I~~---~ip~Lld~l~dp~ 346 (569)
T KOG1242|consen 282 ADCAPKQLSLCLPDLIPVLSEVLWDT-KPEVRKAGIETLLKFGSVIDNPD-IQK---IIPTLLDALADPS 346 (569)
T ss_pred HHhchHHHHHHHhHhhHHHHHHHccC-CHHHHHHHHHHHHHHHHhhccHH-HHH---HHHHHHHHhcCcc
Confidence 88777777778899999999999998 58999999999999887665555 221 4688888887655
No 97
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=97.30 E-value=0.0015 Score=42.43 Aligned_cols=69 Identities=16% Similarity=0.188 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChhhHHHHHhcCC
Q 044293 150 AGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGMIALTKTDQ 218 (236)
Q Consensus 150 ~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~ 218 (236)
..+.|++++.++++++.+...+-+.++++.++++....+...++--|..+|.-++.+.++.+.+-+.|.
T Consensus 3 ~lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~gW 71 (73)
T PF14668_consen 3 ELKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELGW 71 (73)
T ss_pred HHHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcCC
Confidence 357899999999999999999888999999999998876678889999999999999999999988764
No 98
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.30 E-value=0.0084 Score=44.97 Aligned_cols=120 Identities=10% Similarity=0.125 Sum_probs=95.5
Q ss_pred HHHHHhccCcHHHHHhhccCCC------hHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccC-CHHHHHHHHH
Q 044293 43 RSLLAQTDGAISTLLGLSKSSS------PIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSS-SQETVKLASS 115 (236)
Q Consensus 43 ~~~i~~~~g~i~~Lv~lL~~~~------~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~-~~~~~~~a~~ 115 (236)
...|... ||++.|++++.++. .+....++.+...|-.|.-.-....+..+|..++..+.... +..+.+.|..
T Consensus 4 A~EFI~~-~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa 82 (160)
T PF11841_consen 4 AQEFISR-DGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLA 82 (160)
T ss_pred HHHHHhc-cCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHH
Confidence 4556776 99999999998765 36677788888888888765566778889999999998653 6788899999
Q ss_pred HHHHhcccchh-hhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhc
Q 044293 116 LICSLAMLDKN-KARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQ 163 (236)
Q Consensus 116 ~L~~Ls~~~~~-~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~ 163 (236)
.|-++..++.. -..+.+.=.++.|+.+|+..+++.+.+|+..+-.|-.
T Consensus 83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~ 131 (160)
T PF11841_consen 83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFL 131 (160)
T ss_pred HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 99999887765 3444456778999999999888888888877766654
No 99
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.18 E-value=0.096 Score=44.06 Aligned_cols=197 Identities=15% Similarity=0.148 Sum_probs=110.9
Q ss_pred hHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhc-cCcHHHHHhhccCCChHHHHHHHHHHHhhCCC-
Q 044293 4 PRVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQT-DGAISTLLGLSKSSSPIIRTLSLSILLNLSLN- 81 (236)
Q Consensus 4 ~~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~- 81 (236)
+++++.+...++.+...+...|..++..+......... ...+.+. ...+..+...++.+..+-+..|+.++.-++..
T Consensus 39 ~~~e~~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~-~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltl 117 (309)
T PF05004_consen 39 EDLEDKLKEAIDLLTEKSSSTREAALEALIRALSSRYL-PDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTL 117 (309)
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhc
Confidence 44555677778888777788999999999887755321 1222111 13466666677777666667777777766554
Q ss_pred --CchhHHhhhcccHHHHHHHHhccC-CHHHHHHHHHHHHHhcccchh-hhhhcc-cCcHHH--HHHhhcC---------
Q 044293 82 --PDLKQSLASMETIYRLNWIIQSSS-SQETVKLASSLICSLAMLDKN-KARFGV-AGTVQV--LVKAVSA--------- 145 (236)
Q Consensus 82 --~~~~~~i~~~g~i~~L~~lL~~~~-~~~~~~~a~~~L~~Ls~~~~~-~~~i~~-~g~i~~--Lv~lL~~--------- 145 (236)
......+.+ ...|.|...+..+. .+..+..++.+|.-++..... -..+.. -..+.. .......
T Consensus 118 g~g~~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~ 196 (309)
T PF05004_consen 118 GAGEDSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAA 196 (309)
T ss_pred CCCccHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccC
Confidence 233445543 47788888888663 355666665555544332110 111110 122331 1222222
Q ss_pred -CCcHHHHHHHHHHHHHhc-CCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHH
Q 044293 146 -PSNPAGHHLLSSLAELVQ-FHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLL 203 (236)
Q Consensus 146 -~~~~~~~~a~~aL~~L~~-~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l 203 (236)
+++.+...|+.+-.-|.. .+.....-.-...+|.|+.+|.+++ .+++..|-.+|.-|
T Consensus 197 ~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d-~~VRiAAGEaiAll 255 (309)
T PF05004_consen 197 EDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDD-VDVRIAAGEAIALL 255 (309)
T ss_pred CCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHH
Confidence 123566666666555544 3332222223567999999999874 67776555554443
No 100
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.14 E-value=0.04 Score=46.67 Aligned_cols=164 Identities=14% Similarity=0.167 Sum_probs=96.0
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHH
Q 044293 8 ETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQS 87 (236)
Q Consensus 8 ~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~ 87 (236)
+.++.+++.+.+.+..++..+...+..+. .. -.++.+..++...++.++..++.+|..+-
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~-----------~~-~av~~l~~~l~d~~~~vr~~a~~aLg~~~-------- 102 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELG-----------SE-EAVPLLRELLSDEDPRVRDAAADALGELG-------- 102 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhc-----------hH-HHHHHHHHHhcCCCHHHHHHHHHHHHccC--------
Confidence 56777888887777777777766633331 11 45777778888777777777777554432
Q ss_pred hhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccc--------------------------hhh-------hhhcccC
Q 044293 88 LASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLD--------------------------KNK-------ARFGVAG 134 (236)
Q Consensus 88 i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~--------------------------~~~-------~~i~~~g 134 (236)
....++.++..++.+.+..++..|+.+|..+-... ..+ ..++...
T Consensus 103 --~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~~~ 180 (335)
T COG1413 103 --DPEAVPPLVELLENDENEGVRAAAARALGKLGDERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGDPE 180 (335)
T ss_pred --ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCChh
Confidence 23355556665553215556666655555433211 011 1133466
Q ss_pred cHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHH
Q 044293 135 TVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNL 202 (236)
Q Consensus 135 ~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~ 202 (236)
.++.+...+...+..++..+..+|..+.... ....+.+...+.+.+ ..++..++..|..
T Consensus 181 ~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~~~-~~vr~~~~~~l~~ 239 (335)
T COG1413 181 AIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKALSDES-LEVRKAALLALGE 239 (335)
T ss_pred hhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcCCC-HHHHHHHHHHhcc
Confidence 7788888888877778888888887776654 233344555555442 3444444444433
No 101
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.13 E-value=0.0032 Score=43.66 Aligned_cols=67 Identities=10% Similarity=0.088 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHhc-CCCChHHHHHhCcHHHHHHHhcCC-ChhhHHHHHHHHHHHHcC-ChhhHHHHHhcC
Q 044293 151 GHHLLSSLAELVQ-FHGNSTLAVRAGAVSELIHLIGST-EAEDLAGTSLAVLNLLAR-FDEGMIALTKTD 217 (236)
Q Consensus 151 ~~~a~~aL~~L~~-~~~~~~~~~~~g~i~~lv~ll~~~-~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g 217 (236)
+...++.|+|||. ++.++..+.+.|++|.+++.-.-. .+|-+++.|+.++.||+. ++++++.+.+..
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L~ 72 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQLE 72 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhcc
Confidence 4567889999997 578899999999999999987543 367899999999999995 678988887654
No 102
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=97.09 E-value=0.01 Score=48.18 Aligned_cols=98 Identities=19% Similarity=0.274 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccC-CChHHHHHHHHHHHh-hCCCCchhHHhhhcccHHHHHHHH
Q 044293 24 DQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKS-SSPIIRTLSLSILLN-LSLNPDLKQSLASMETIYRLNWII 101 (236)
Q Consensus 24 ~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~-l~~~~~~~~~i~~~g~i~~L~~lL 101 (236)
....|+..|+.++--++..|..|.+. .++..|+++|+. ..+.++..++.+|.. |..++.|...+-+.+|+..++.++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~-~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll 185 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHRE-QNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhh-hhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence 45668899999998889999999998 999999999954 567888888877775 566678988999999999999999
Q ss_pred hccC-CHHHHHHHHHHHHHhcc
Q 044293 102 QSSS-SQETVKLASSLICSLAM 122 (236)
Q Consensus 102 ~~~~-~~~~~~~a~~~L~~Ls~ 122 (236)
++.. +.+++-.+...|+....
T Consensus 186 k~~~~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 186 KSKSTDRELRLKCIEFLYFYLM 207 (257)
T ss_pred ccccccHHHhHHHHHHHHHHHc
Confidence 9753 67888888888774433
No 103
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.06 E-value=0.016 Score=51.77 Aligned_cols=178 Identities=13% Similarity=0.160 Sum_probs=110.3
Q ss_pred hHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCc
Q 044293 4 PRVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPD 83 (236)
Q Consensus 4 ~~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~ 83 (236)
..+...+|.++.-+....+.....+++.+..++...+..-. ... +.+||.+.+.|.+..+++++.+..+|..++..-+
T Consensus 250 ~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs-~~l-p~iiP~lsevl~DT~~evr~a~~~~l~~~~svid 327 (569)
T KOG1242|consen 250 YAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLS-LCL-PDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVID 327 (569)
T ss_pred chhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHH-HHH-hHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhc
Confidence 34455566666655545667778888889988877554333 333 3899999999999999999999999998877555
Q ss_pred hhHHh--------------------------------hhcccHHHHHHHHhcc---CCHHHHHHHHHHHHHhcccchhhh
Q 044293 84 LKQSL--------------------------------ASMETIYRLNWIIQSS---SSQETVKLASSLICSLAMLDKNKA 128 (236)
Q Consensus 84 ~~~~i--------------------------------~~~g~i~~L~~lL~~~---~~~~~~~~a~~~L~~Ls~~~~~~~ 128 (236)
|.... ++...+..++-+|+++ ++.++++.++.++.|++..-+...
T Consensus 328 N~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~ 407 (569)
T KOG1242|consen 328 NPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPK 407 (569)
T ss_pred cHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHH
Confidence 53321 1122233333333332 245677778888888877553333
Q ss_pred hhcc--cCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcC
Q 044293 129 RFGV--AGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGS 186 (236)
Q Consensus 129 ~i~~--~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~ 186 (236)
.+.. ...+|.|=..+....|+++..+.++|..+-..-.+... .+.+|.+.+.+.+
T Consensus 408 ~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f---~d~~p~l~e~~~~ 464 (569)
T KOG1242|consen 408 DLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF---DDLIPELSETLTS 464 (569)
T ss_pred HHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc---cccccHHHHhhcc
Confidence 3332 34444455555566788999999998666543222221 4555555555543
No 104
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.03 E-value=0.013 Score=53.44 Aligned_cols=186 Identities=12% Similarity=0.107 Sum_probs=103.4
Q ss_pred chHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCC-ChHHHHHHHHHHHhhCCC
Q 044293 3 APRVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSS-SPIIRTLSLSILLNLSLN 81 (236)
Q Consensus 3 ~~~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~ 81 (236)
++++++..|+|++.|.++|+.++..|+..++.|++.+|.|.- -.-|.+..++... +.=+.-..+....+|+--
T Consensus 176 PeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL------~LAP~ffkllttSsNNWmLIKiiKLF~aLtpl 249 (877)
T KOG1059|consen 176 PEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL------QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPL 249 (877)
T ss_pred hHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc------cccHHHHHHHhccCCCeehHHHHHHHhhcccc
Confidence 578899999999999999999999999999999999988754 2356666776433 333333444555555544
Q ss_pred CchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHH--Hhcccc-hhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHH
Q 044293 82 PDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLIC--SLAMLD-KNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSL 158 (236)
Q Consensus 82 ~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~--~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL 158 (236)
+. .+. .-.+++|..++.+..-..+.=.|..++- +++..- +.-+.+ .=.++.|-.++.+.++..+.-.+.++
T Consensus 250 EP---RLg-KKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asi--qLCvqKLr~fiedsDqNLKYlgLlam 323 (877)
T KOG1059|consen 250 EP---RLG-KKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASI--QLCVQKLRIFIEDSDQNLKYLGLLAM 323 (877)
T ss_pred Cc---hhh-hhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHH--HHHHHHHhhhhhcCCccHHHHHHHHH
Confidence 32 222 3367888888876521111111222211 111110 101110 12344555555556666666777777
Q ss_pred HHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC
Q 044293 159 AELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR 205 (236)
Q Consensus 159 ~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~ 205 (236)
+.+...+...-+ ..-..++..|.+.| +.++-.|+..|.-+..
T Consensus 324 ~KI~ktHp~~Vq----a~kdlIlrcL~DkD-~SIRlrALdLl~gmVs 365 (877)
T KOG1059|consen 324 SKILKTHPKAVQ----AHKDLILRCLDDKD-ESIRLRALDLLYGMVS 365 (877)
T ss_pred HHHhhhCHHHHH----HhHHHHHHHhccCC-chhHHHHHHHHHHHhh
Confidence 666643221111 01133455555553 4555555555555443
No 105
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.14 Score=42.96 Aligned_cols=213 Identities=14% Similarity=0.170 Sum_probs=141.9
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHH--hhccCCChHHHHHHHHHHHhhCC-CCch
Q 044293 8 ETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLL--GLSKSSSPIIRTLSLSILLNLSL-NPDL 84 (236)
Q Consensus 8 ~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv--~lL~~~~~~~~~~a~~~L~~l~~-~~~~ 84 (236)
+..+.++...-.++.++...|.+.+..++.. +..-+.+.++ .....+- ++-...+.-.|......+..+.. .+..
T Consensus 128 eilklildcIggeddeVAkAAiesikrialf-paaleaiFeS-ellDdlhlrnlaakcndiaRvRVleLIieifSiSpes 205 (524)
T KOG4413|consen 128 EILKLILDCIGGEDDEVAKAAIESIKRIALF-PAALEAIFES-ELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPES 205 (524)
T ss_pred hHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-HHHHHHhccc-ccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHH
Confidence 3456667777777888888888889988886 4455666665 4443332 22222244456666776665544 4566
Q ss_pred hHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCC--CcHHHHHHH----HHH
Q 044293 85 KQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAP--SNPAGHHLL----SSL 158 (236)
Q Consensus 85 ~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~----~aL 158 (236)
-......|.+..|..-++-.+|.-++.++......|+..+..++-+.+.|.|..+-.++.-. +|-..-.++ +.+
T Consensus 206 aneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkff 285 (524)
T KOG4413|consen 206 ANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFF 285 (524)
T ss_pred HhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHh
Confidence 77788899999998888754466778889999999999998888888899999999888643 222222222 334
Q ss_pred HHHhcCCCChHHHHHh--CcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChhhHHHHHhcCCcHHHHHH
Q 044293 159 AELVQFHGNSTLAVRA--GAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGMIALTKTDQIVSLMVD 225 (236)
Q Consensus 159 ~~L~~~~~~~~~~~~~--g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~~i~~lv~ 225 (236)
.+....+-.-++++++ -++.-..+.+... +++.++.|+.++..|-++.++...+...|- |..=+
T Consensus 286 gkeaimdvseeaicealiiaidgsfEmiEmn-DpdaieaAiDalGilGSnteGadlllkTgp--paaeh 351 (524)
T KOG4413|consen 286 GKEAIMDVSEEAICEALIIAIDGSFEMIEMN-DPDAIEAAIDALGILGSNTEGADLLLKTGP--PAAEH 351 (524)
T ss_pred cchHHhhcCHHHHHHHHHHHHHhhHHhhhcC-CchHHHHHHHHHHhccCCcchhHHHhccCC--hHHHH
Confidence 4444444333344332 2233344445444 377889999999999999999999988863 44433
No 106
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=96.96 E-value=0.0091 Score=46.53 Aligned_cols=121 Identities=17% Similarity=0.057 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHhc--------------cCcHHHHHhhccCC------ChHHHHHHHHHHHhhCCCC
Q 044293 23 EDQQKALQTLASITRVSPQYRSLLAQT--------------DGAISTLLGLSKSS------SPIIRTLSLSILLNLSLNP 82 (236)
Q Consensus 23 ~~~~~a~~~L~~l~~~~~~~~~~i~~~--------------~g~i~~Lv~lL~~~------~~~~~~~a~~~L~~l~~~~ 82 (236)
.....++..|.|+++.+...+..+... ...+..|++.+..+ ...-....+.++.|++..+
T Consensus 10 ~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~ 89 (192)
T PF04063_consen 10 PLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLP 89 (192)
T ss_pred chHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCH
Confidence 344456677788887643322222211 13677777776441 2233567788999999999
Q ss_pred chhHHhhhc--cc--HHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcc---cCcHHHHHHhhc
Q 044293 83 DLKQSLASM--ET--IYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGV---AGTVQVLVKAVS 144 (236)
Q Consensus 83 ~~~~~i~~~--g~--i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~---~g~i~~Lv~lL~ 144 (236)
++|..+.+. +. +..|+-..++. +..=+.-++++|.|+|.+.+.-..+.. .+.+|.|+--|.
T Consensus 90 ~gR~~~l~~~~~~~~l~kLl~ft~~~-s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 90 EGRQFFLDPQRYDGPLQKLLPFTEHK-SVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred HHHHHHhCchhhhhHHHHHHHHhccC-cHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 999999843 34 67777777776 667777899999999998866555544 355555555554
No 107
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=96.95 E-value=0.11 Score=44.64 Aligned_cols=210 Identities=18% Similarity=0.143 Sum_probs=124.8
Q ss_pred HHHhHHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccC-CCh-HHHHHHHHHHHhhCCC
Q 044293 5 RVRETINNCVSRSQ-SDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKS-SSP-IIRTLSLSILLNLSLN 81 (236)
Q Consensus 5 ~~~~~i~~lv~~L~-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~-~~~-~~~~~a~~~L~~l~~~ 81 (236)
++.+.|..+++-+. +.....|+.++-.|..-+.+ +++++.|..+ |.+..+++.+.. ++. ..--.++.+++-++.+
T Consensus 18 rf~Dev~ylld~l~~~~~~s~Rr~sll~La~K~~~-~~Fr~~~ra~-g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d 95 (361)
T PF07814_consen 18 RFADEVEYLLDGLESSSSSSVRRSSLLELASKCAD-PQFRRQFRAH-GLVKRLFKALSDAPDDDILALATAAILYVLSRD 95 (361)
T ss_pred hHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhCC-HHHHHHHHHc-CcHHHHHHHhccccchHHHHHHHHHHHHHHccC
Confidence 34678889999997 34456788887777777775 7899999998 999999999843 333 3333334455556665
Q ss_pred CchhHHhhhcccHHHHHHHHhc--c----CC-------------------------------------HHHHHHHHHHHH
Q 044293 82 PDLKQSLASMETIYRLNWIIQS--S----SS-------------------------------------QETVKLASSLIC 118 (236)
Q Consensus 82 ~~~~~~i~~~g~i~~L~~lL~~--~----~~-------------------------------------~~~~~~a~~~L~ 118 (236)
..+-..+-+.+.+..+++++.. . .+ ...+.-|..+|-
T Consensus 96 ~~~~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~le 175 (361)
T PF07814_consen 96 GLNMHLLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLALE 175 (361)
T ss_pred CcchhhhhchhHHHHHHHHhccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHHHHH
Confidence 5554444455555555555550 0 00 011111223333
Q ss_pred Hhc---------------ccchhhhhhcccCcHHHHHHhhcC----CC---------c---HHHHHHHHHHHHHhc-CCC
Q 044293 119 SLA---------------MLDKNKARFGVAGTVQVLVKAVSA----PS---------N---PAGHHLLSSLAELVQ-FHG 166 (236)
Q Consensus 119 ~Ls---------------~~~~~~~~i~~~g~i~~Lv~lL~~----~~---------~---~~~~~a~~aL~~L~~-~~~ 166 (236)
.++ ..+..|..+...|++..++.++.+ .+ . .....++++|-+.+. +++
T Consensus 176 ~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~~ 255 (361)
T PF07814_consen 176 SLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSEE 255 (361)
T ss_pred HHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCcc
Confidence 331 011235555667899999999862 11 1 134667788877775 467
Q ss_pred ChHHHHHh--CcHHHHHHHh-cCC--ChhhHHHHHHHHHHHHcCC-hhhHHHHHhc
Q 044293 167 NSTLAVRA--GAVSELIHLI-GST--EAEDLAGTSLAVLNLLARF-DEGMIALTKT 216 (236)
Q Consensus 167 ~~~~~~~~--g~i~~lv~ll-~~~--~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~ 216 (236)
|....... +.++.....+ ... ..+++...+++++.|++.+ |+..+.+...
T Consensus 256 nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~ 311 (361)
T PF07814_consen 256 NQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASP 311 (361)
T ss_pred chHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhh
Confidence 77766553 4444444333 221 1234567899999999975 4665555544
No 108
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=96.91 E-value=0.006 Score=46.04 Aligned_cols=115 Identities=17% Similarity=0.265 Sum_probs=80.6
Q ss_pred HHHhHHHHHHHHh-cCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhcc--CCChHHHHHHHHHHHhhCCC
Q 044293 5 RVRETINNCVSRS-QSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSK--SSSPIIRTLSLSILLNLSLN 81 (236)
Q Consensus 5 ~~~~~i~~lv~~L-~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~--~~~~~~~~~a~~~L~~l~~~ 81 (236)
...+.+...++.+ ..++.+....+..++..+--.-++.-..+...+|..+.+..+.. +.+...+..++.+|..-|.+
T Consensus 39 ~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d 118 (157)
T PF11701_consen 39 EFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID 118 (157)
T ss_dssp HHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc
Confidence 3445555555444 33334466677777877776666665555555699999999998 77888899999999777776
Q ss_pred CchhHHhhhcccHHHHHHHHhccCCHH-HHHHHHHHHHHh
Q 044293 82 PDLKQSLASMETIYRLNWIIQSSSSQE-TVKLASSLICSL 120 (236)
Q Consensus 82 ~~~~~~i~~~g~i~~L~~lL~~~~~~~-~~~~a~~~L~~L 120 (236)
+..|..|.++ +++.|-+.++.+.++. ++..|+..|..|
T Consensus 119 ~~~r~~I~~~-~~~~L~~~~~~~~~~~~ir~~A~v~L~Kl 157 (157)
T PF11701_consen 119 KSCRTFISKN-YVSWLKELYKNSKDDSEIRVLAAVGLCKL 157 (157)
T ss_dssp HHHHHCCHHH-CHHHHHHHTTTCC-HH-CHHHHHHHHHHC
T ss_pred HHHHHHHHHH-HHHHHHHHHccccchHHHHHHHHHHHhcC
Confidence 6666666644 7889999997653555 788888888764
No 109
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=96.84 E-value=0.035 Score=46.22 Aligned_cols=181 Identities=12% Similarity=0.119 Sum_probs=110.8
Q ss_pred CHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCC--ChHHHHHHHHHHHhhCCCCchhHHhhh-cccHHHH
Q 044293 21 SYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSS--SPIIRTLSLSILLNLSLNPDLKQSLAS-METIYRL 97 (236)
Q Consensus 21 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~l~~~~~~~~~i~~-~g~i~~L 97 (236)
++-.+--|+.++.++... ++.|..+-..+-.-..++.++++. +.++|-.++-+++.++..+...+.|-+ .+.+.-+
T Consensus 162 ~~lTrlfav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dl 240 (432)
T COG5231 162 DFLTRLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDL 240 (432)
T ss_pred HHHHHHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 444555677788888765 455544333324556777777763 567888999999999988877655543 3677777
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhcc-cc-hhhhhhcccCcHHHHHHhhc-------------------------------
Q 044293 98 NWIIQSSSSQETVKLASSLICSLAM-LD-KNKARFGVAGTVQVLVKAVS------------------------------- 144 (236)
Q Consensus 98 ~~lL~~~~~~~~~~~a~~~L~~Ls~-~~-~~~~~i~~~g~i~~Lv~lL~------------------------------- 144 (236)
+++.+......+.+.+++.+.|++. .+ +.-....-.|-+.+-+++|.
T Consensus 241 i~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD 320 (432)
T COG5231 241 IAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFD 320 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 7777754335566677777777765 11 11112222233333344333
Q ss_pred ----------------------------------------------CCCcH-HHHHHHHHHHHHhc-CCCChHHHHHhCc
Q 044293 145 ----------------------------------------------APSNP-AGHHLLSSLAELVQ-FHGNSTLAVRAGA 176 (236)
Q Consensus 145 ----------------------------------------------~~~~~-~~~~a~~aL~~L~~-~~~~~~~~~~~g~ 176 (236)
+.++. ...-|+.=+..+.. .|+.+..+.+.|+
T Consensus 321 ~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~ 400 (432)
T COG5231 321 NYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGV 400 (432)
T ss_pred HHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhh
Confidence 22221 11234444444454 5667777788888
Q ss_pred HHHHHHHhcCCChhhHHHHHHHHHHHH
Q 044293 177 VSELIHLIGSTEAEDLAGTSLAVLNLL 203 (236)
Q Consensus 177 i~~lv~ll~~~~~~~~~~~a~~~L~~l 203 (236)
=..+++|+++++ ++++-.|+.++.-+
T Consensus 401 k~~im~L~nh~d-~~VkfeAl~a~q~~ 426 (432)
T COG5231 401 KEIIMNLINHDD-DDVKFEALQALQTC 426 (432)
T ss_pred HHHHHHHhcCCC-chhhHHHHHHHHHH
Confidence 888999998875 67887888777543
No 110
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.84 E-value=0.034 Score=51.03 Aligned_cols=147 Identities=19% Similarity=0.187 Sum_probs=95.6
Q ss_pred HHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCch
Q 044293 5 RVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDL 84 (236)
Q Consensus 5 ~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~ 84 (236)
|+...-+.+++.....+-+...-....+.+.+...++- .. +.+..++.=...+++.+|..|++.+..+-.
T Consensus 46 DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~-----a~-~avnt~~kD~~d~np~iR~lAlrtm~~l~v---- 115 (734)
T KOG1061|consen 46 DVSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDL-----AI-LAVNTFLKDCEDPNPLIRALALRTMGCLRV---- 115 (734)
T ss_pred chHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchH-----HH-hhhhhhhccCCCCCHHHHHHHhhceeeEee----
Confidence 44445555555555555444454555566666554432 11 455555555555566666555544433222
Q ss_pred hHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcC
Q 044293 85 KQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQF 164 (236)
Q Consensus 85 ~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~ 164 (236)
..+. .-...++...++++ ++-++..++....++=..+ .....+.|.++.|-.++.+.++.+..+|+.+|..+...
T Consensus 116 -~~i~-ey~~~Pl~~~l~d~-~~yvRktaa~~vakl~~~~--~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~ 190 (734)
T KOG1061|consen 116 -DKIT-EYLCDPLLKCLKDD-DPYVRKTAAVCVAKLFDID--PDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHES 190 (734)
T ss_pred -hHHH-HHHHHHHHHhccCC-ChhHHHHHHHHHHHhhcCC--hhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHh
Confidence 1121 12566888888887 7888888887777765544 67777899999999999988999999999999999875
Q ss_pred CC
Q 044293 165 HG 166 (236)
Q Consensus 165 ~~ 166 (236)
+.
T Consensus 191 ~~ 192 (734)
T KOG1061|consen 191 HP 192 (734)
T ss_pred CC
Confidence 54
No 111
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.78 E-value=0.0056 Score=43.61 Aligned_cols=71 Identities=20% Similarity=0.262 Sum_probs=57.7
Q ss_pred HhHHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhh
Q 044293 7 RETINNCVSRSQ-SDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNL 78 (236)
Q Consensus 7 ~~~i~~lv~~L~-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l 78 (236)
-+.+..|+++|. +.++....-|+.-|..++...|..|..+.+. |+=+.+..+++++|++++..|+.++..+
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~l-g~K~~vM~Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKL-GAKERVMELMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHH-SHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhc-ChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 457889999994 4566677778888999999989888888887 9999999999999999999999887643
No 112
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.72 E-value=0.13 Score=39.62 Aligned_cols=112 Identities=17% Similarity=0.212 Sum_probs=81.5
Q ss_pred CHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHH
Q 044293 21 SYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWI 100 (236)
Q Consensus 21 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~l 100 (236)
++.+|..++.++..++...+ .+++ .++|.+...|+++++.+|..|+.+|.+|...+-.|.. ...+..++..
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~----~~ve--~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k---~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYP----NLVE--PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK---GQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCc----HHHH--hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh---hhhhHHHHHH
Confidence 46789999999999987643 3454 5899999999999999999999999998775433221 2233777788
Q ss_pred HhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcC
Q 044293 101 IQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSA 145 (236)
Q Consensus 101 L~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~ 145 (236)
+... +++++..|...+..+..... ...+ ...++.++..+..
T Consensus 72 l~D~-~~~Ir~~A~~~~~e~~~~~~-~~~i--~~~~~e~i~~l~~ 112 (178)
T PF12717_consen 72 LVDE-NPEIRSLARSFFSELLKKRN-PNII--YNNFPELISSLNN 112 (178)
T ss_pred HcCC-CHHHHHHHHHHHHHHHHhcc-chHH--HHHHHHHHHHHhC
Confidence 8766 89999999999998887631 2222 2445555555554
No 113
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.70 E-value=0.16 Score=48.59 Aligned_cols=196 Identities=11% Similarity=0.019 Sum_probs=134.9
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHH-HHHhcCChHHHHHHHhccCcHHHHHhhccCC---ChHHHHHHHHHHHhhCCC-C
Q 044293 8 ETINNCVSRSQSDSYEDQQKALQTL-ASITRVSPQYRSLLAQTDGAISTLLGLSKSS---SPIIRTLSLSILLNLSLN-P 82 (236)
Q Consensus 8 ~~i~~lv~~L~~~~~~~~~~a~~~L-~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~---~~~~~~~a~~~L~~l~~~-~ 82 (236)
+.-|..+++|+++-.+.+--.+-.= ..|+.+ +.-+..+++. +|-..++..|.++ +++-+..|+-+|..+..+ +
T Consensus 512 GIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD-~SCQ~dLvKe-~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~ 589 (1387)
T KOG1517|consen 512 GIFPYVLKLLQSSARELRPILVFIWAKILAVD-PSCQADLVKE-NGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFK 589 (1387)
T ss_pred chHHHHHHHhccchHhhhhhHHHHHHHHHhcC-chhHHHHHhc-cCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccc
Confidence 4568889999988777665433332 345554 5556667776 8888999998762 357778888888887665 5
Q ss_pred chhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhccc-chhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHH
Q 044293 83 DLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAML-DKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAEL 161 (236)
Q Consensus 83 ~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L 161 (236)
-++....+.+.|..=+..|..+..+-.+.=++-+|..|=.+ ++.+-.=.+.++.+.|+.+|.+..++++..|+-||..+
T Consensus 590 lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtf 669 (1387)
T KOG1517|consen 590 LGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTF 669 (1387)
T ss_pred hhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHH
Confidence 67788888999998888887752356677788888877544 45555555689999999999999999999999999887
Q ss_pred hcC-----CCChHH-----------HHHhCcHH----HHHHHhcCCChhhHHHHHHHHHHHHcCC
Q 044293 162 VQF-----HGNSTL-----------AVRAGAVS----ELIHLIGSTEAEDLAGTSLAVLNLLARF 206 (236)
Q Consensus 162 ~~~-----~~~~~~-----------~~~~g~i~----~lv~ll~~~~~~~~~~~a~~~L~~l~~~ 206 (236)
-.. ++.... ..-...++ .++.++++++ +-+....+-.|......
T Consensus 670 l~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgs-plvr~ev~v~ls~~~~g 733 (1387)
T KOG1517|consen 670 LSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGS-PLVRTEVVVALSHFVVG 733 (1387)
T ss_pred hcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccc-hHHHHHHHHHHHHHHHh
Confidence 663 221111 11123333 5666777764 55655566666665543
No 114
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.64 E-value=0.21 Score=46.58 Aligned_cols=168 Identities=13% Similarity=0.110 Sum_probs=119.1
Q ss_pred hcCCCHHHHHHHHHH-HHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhhhcccHH
Q 044293 17 SQSDSYEDQQKALQT-LASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIY 95 (236)
Q Consensus 17 L~~~~~~~~~~a~~~-L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~ 95 (236)
+.+++...+..|.+. |..++.+++ . - ...+-+++...+.|.++++..--=|.+.+........+ .+.
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~d-m----s---sLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL----avN 95 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGED-M----S---SLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL----AVN 95 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCC-h----H---HHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH----HHH
Confidence 334455566667666 455655533 1 1 35666667766778888776666666777765543333 456
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCCChHHHHHhC
Q 044293 96 RLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAG 175 (236)
Q Consensus 96 ~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~g 175 (236)
.+.+=+++. ++.+|..|.+++..+=.. ..+ ...++++.+.+.++++.+++.|+-|+..+=+ -.+....+.|
T Consensus 96 ti~kDl~d~-N~~iR~~AlR~ls~l~~~----el~--~~~~~~ik~~l~d~~ayVRk~Aalav~kly~--ld~~l~~~~g 166 (757)
T COG5096 96 TIQKDLQDP-NEEIRGFALRTLSLLRVK----ELL--GNIIDPIKKLLTDPHAYVRKTAALAVAKLYR--LDKDLYHELG 166 (757)
T ss_pred HHHhhccCC-CHHHHHHHHHHHHhcChH----HHH--HHHHHHHHHHccCCcHHHHHHHHHHHHHHHh--cCHhhhhccc
Confidence 777778888 899999998887765332 222 3568999999999999999999999877653 3455566789
Q ss_pred cHHHHHHHhcCCChhhHHHHHHHHHHHHcCC
Q 044293 176 AVSELIHLIGSTEAEDLAGTSLAVLNLLARF 206 (236)
Q Consensus 176 ~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~ 206 (236)
.+..+..++.+.+ +.+.-.|+.+|..+...
T Consensus 167 ~~~~l~~l~~D~d-P~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 167 LIDILKELVADSD-PIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHHhhCCC-chHHHHHHHHHHHhchh
Confidence 9999999998885 78888999998886543
No 115
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=96.63 E-value=0.2 Score=43.98 Aligned_cols=194 Identities=19% Similarity=0.190 Sum_probs=117.3
Q ss_pred HHHhHHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhc-cCCChHHHHHHHHHHHhhCCCC
Q 044293 5 RVRETINNCVSRSQ-SDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLS-KSSSPIIRTLSLSILLNLSLNP 82 (236)
Q Consensus 5 ~~~~~i~~lv~~L~-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~~a~~~L~~l~~~~ 82 (236)
+..+.+..++.+.. ..++..+..+++.+..+...-+.. . ..+ +.+..+...+ ...++..+..+..++.-+++.=
T Consensus 186 ~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~-~-~l~--~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaL 261 (415)
T PF12460_consen 186 DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDD-D-DLD--EFLDSLLQSISSSEDSELRPQALEILIWITKAL 261 (415)
T ss_pred CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCh-h-hHH--HHHHHHHhhhcccCCcchhHHHHHHHHHHHHHH
Confidence 34567778888875 445777888888888887662111 1 111 2344444444 2333333344444433322100
Q ss_pred chhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhccc-chh-------------hhhhcccCcHHHHHHhhcCCCc
Q 044293 83 DLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAML-DKN-------------KARFGVAGTVQVLVKAVSAPSN 148 (236)
Q Consensus 83 ~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~-~~~-------------~~~i~~~g~i~~Lv~lL~~~~~ 148 (236)
-.|..-.....+..|+.+|. ++++...++..+.-+..+ ++. |+++. ...+|.|++-.+..+.
T Consensus 262 v~R~~~~~~~~~~~L~~lL~---~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F-~~~~p~L~~~~~~~~~ 337 (415)
T PF12460_consen 262 VMRGHPLATELLDKLLELLS---SPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFF-TQVLPKLLEGFKEADD 337 (415)
T ss_pred HHcCCchHHHHHHHHHHHhC---ChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHH-HHHHHHHHHHHhhcCh
Confidence 00000012235666777776 457888888888877666 322 22222 4567778777777766
Q ss_pred HHHHHHHHHHHHHhcCCCChHHHHH-hCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCCh
Q 044293 149 PAGHHLLSSLAELVQFHGNSTLAVR-AGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFD 207 (236)
Q Consensus 149 ~~~~~a~~aL~~L~~~~~~~~~~~~-~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~ 207 (236)
..+.+.+.+|.++..+-+....+-+ ...+|.+++-|..++ .+++..++.+|..+..+.
T Consensus 338 ~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~-~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 338 EIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPD-ADVLLSSLETLKMILEEA 396 (415)
T ss_pred hhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHcC
Confidence 6788889999998886553333333 468999999997774 678899999999887654
No 116
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.59 E-value=0.12 Score=47.73 Aligned_cols=185 Identities=14% Similarity=0.067 Sum_probs=110.6
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHH---hc--------------cCcHHHHHhhccCCCh-------HHHH
Q 044293 14 VSRSQSDSYEDQQKALQTLASITRVSPQYRSLLA---QT--------------DGAISTLLGLSKSSSP-------IIRT 69 (236)
Q Consensus 14 v~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~---~~--------------~g~i~~Lv~lL~~~~~-------~~~~ 69 (236)
+..++++++++..++.+.=.+.|.+.-+...... +. .+++|.|+++|...++ ..-.
T Consensus 265 l~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~k 344 (859)
T KOG1241|consen 265 LAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAK 344 (859)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHH
Confidence 4455688888988888887777764222111111 11 2678889998865322 1112
Q ss_pred HHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchh-hhhhcccCcHHHHHHhhcCCCc
Q 044293 70 LSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKN-KARFGVAGTVQVLVKAVSAPSN 148 (236)
Q Consensus 70 ~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~-~~~i~~~g~i~~Lv~lL~~~~~ 148 (236)
.|-.+|.-++.. .++.|+. ..+|.+-..+++. |-.-++.|+-+....-..++. +..=...+++|.++.++.+++.
T Consensus 345 AAg~CL~l~A~~--~~D~Iv~-~Vl~Fiee~i~~p-dwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl 420 (859)
T KOG1241|consen 345 AAGVCLMLFAQC--VGDDIVP-HVLPFIEENIQNP-DWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSL 420 (859)
T ss_pred HHHHHHHHHHHH--hcccchh-hhHHHHHHhcCCc-chhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchh
Confidence 222233322221 1122222 3444444466655 555666666666655554432 2222247899999999998887
Q ss_pred HHHHHHHHHHHHHhcCCC-ChH-HHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHc
Q 044293 149 PAGHHLLSSLAELVQFHG-NST-LAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLA 204 (236)
Q Consensus 149 ~~~~~a~~aL~~L~~~~~-~~~-~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~ 204 (236)
-++..+.|+|+.++.+-. -+. .....+.++.++.=|++. |.+..++++++.+|+
T Consensus 421 ~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~De--Prva~N~CWAf~~La 476 (859)
T KOG1241|consen 421 WVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDE--PRVASNVCWAFISLA 476 (859)
T ss_pred hhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhC--chHHHHHHHHHHHHH
Confidence 788999999999997533 221 223356677777777764 678899999999998
No 117
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=96.58 E-value=0.028 Score=49.19 Aligned_cols=135 Identities=13% Similarity=0.203 Sum_probs=102.5
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCh---HHHHHHHhccCcHHHHHhhccCCC-------hHHHHHHHHHHH
Q 044293 7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSP---QYRSLLAQTDGAISTLLGLSKSSS-------PIIRTLSLSILL 76 (236)
Q Consensus 7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~---~~~~~i~~~~g~i~~Lv~lL~~~~-------~~~~~~a~~~L~ 76 (236)
......+..+++..+.+.|..|+-...+++++++ .+|+.+.++ =|.+.+=++|.+++ .-.+..++.+|.
T Consensus 10 ~~a~~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeA-VGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLa 88 (698)
T KOG2611|consen 10 SPALDDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEA-VGFHFLDRLLRTKSGPGDCPDDVYLQISITVLA 88 (698)
T ss_pred ccchhhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHH-hccchHHHHhhcCCCCCCCcHHHHHHHHHHHHH
Confidence 3444557777877777889989888899988743 467778888 78999999987642 244677888999
Q ss_pred hhCCCCch--hHHhhhcccHHHHHHHHhccCCHH------HHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhc
Q 044293 77 NLSLNPDL--KQSLASMETIYRLNWIIQSSSSQE------TVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVS 144 (236)
Q Consensus 77 ~l~~~~~~--~~~i~~~g~i~~L~~lL~~~~~~~------~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~ 144 (236)
.+|..|+- ...++ +.||.|..++..+.+++ +...+-.+|...+..+-....+...|+++.+-++-.
T Consensus 89 cFC~~pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~ 162 (698)
T KOG2611|consen 89 CFCRVPELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYE 162 (698)
T ss_pred HHhCChhhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHh
Confidence 99998864 33443 46888888888654444 777888999999988877788888999999986654
No 118
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=96.58 E-value=0.02 Score=46.51 Aligned_cols=83 Identities=17% Similarity=0.175 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHhc-CCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHc-CChhhHHHHHhcCCcHHHHHHH
Q 044293 149 PAGHHLLSSLAELVQ-FHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLA-RFDEGMIALTKTDQIVSLMVDV 226 (236)
Q Consensus 149 ~~~~~a~~aL~~L~~-~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~-~~~~~~~~i~~~g~~i~~lv~~ 226 (236)
.....|++.|-.+|. +++.+..+.+...+..++++|.....+.++..++.+|..+. .++.+...|-+.+| +..++.+
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~G-l~~v~~l 184 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNG-LSTVCSL 184 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCC-HHHHHHH
Confidence 345678899988886 77888888899999999999965434778888888887654 68899999999999 7999999
Q ss_pred hhCCcc
Q 044293 227 LKGRSM 232 (236)
Q Consensus 227 l~~~~~ 232 (236)
+++.+.
T Consensus 185 lk~~~~ 190 (257)
T PF08045_consen 185 LKSKST 190 (257)
T ss_pred Hccccc
Confidence 987653
No 119
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=96.54 E-value=0.031 Score=52.30 Aligned_cols=155 Identities=14% Similarity=0.064 Sum_probs=106.8
Q ss_pred HHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhh-h-cccHHHHHHHHhccCCHHHHHHHHHHHHH
Q 044293 42 YRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLA-S-METIYRLNWIIQSSSSQETVKLASSLICS 119 (236)
Q Consensus 42 ~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~-~-~g~i~~L~~lL~~~~~~~~~~~a~~~L~~ 119 (236)
+|+.|.. +++|.|++.........+.+=+.+|.++-.+-. ++.+. + ...+|.|++.|.-. |.+++.++..++.-
T Consensus 860 ykQRfF~--~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP-~~vllp~~~~LlPLLLq~Ls~~-D~~v~vstl~~i~~ 935 (1030)
T KOG1967|consen 860 YKQRFFC--DIVPILVSKFETAPGSQKHNYLEALSHVLTNVP-KQVLLPQFPMLLPLLLQALSMP-DVIVRVSTLRTIPM 935 (1030)
T ss_pred HHHHHHH--hhHHHHHHHhccCCccchhHHHHHHHHHHhcCC-HHhhccchhhHHHHHHHhcCCC-ccchhhhHhhhhhH
Confidence 4666663 789999999885544455555666666544322 23333 2 56889999999888 89999999988886
Q ss_pred hcccchhhhhhcccCcHHHHHHhhcCCC---cHHHHHHHHHHHHHhc-CCCChHHHHHhCcHHHHHHHhcCCChhhHHHH
Q 044293 120 LAMLDKNKARFGVAGTVQVLVKAVSAPS---NPAGHHLLSSLAELVQ-FHGNSTLAVRAGAVSELIHLIGSTEAEDLAGT 195 (236)
Q Consensus 120 Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~---~~~~~~a~~aL~~L~~-~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~ 195 (236)
+......-.--.-.-.+|.+..+=.+.+ ..++..|+.+|..|.. -|.++-.-.+..++..++..|.+. .+-+++.
T Consensus 936 ~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk-KRlVR~e 1014 (1030)
T KOG1967|consen 936 LLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK-KRLVRKE 1014 (1030)
T ss_pred HHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH-HHHHHHH
Confidence 5543322221112456677766665544 4578999999999998 566555556778889999999887 5778888
Q ss_pred HHHHHH
Q 044293 196 SLAVLN 201 (236)
Q Consensus 196 a~~~L~ 201 (236)
|+.+=.
T Consensus 1015 Av~tR~ 1020 (1030)
T KOG1967|consen 1015 AVDTRQ 1020 (1030)
T ss_pred HHHHhh
Confidence 887643
No 120
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.52 E-value=0.17 Score=42.34 Aligned_cols=170 Identities=17% Similarity=0.182 Sum_probs=109.6
Q ss_pred HhHHHHHH-HHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCC-CC-c
Q 044293 7 RETINNCV-SRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSL-NP-D 83 (236)
Q Consensus 7 ~~~i~~lv-~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~~-~ 83 (236)
.+.+..++ .-+++.++.+|..|+++|..++.-+.+ +.+ ..++.+...++.++++++..|+.++..+.. +. +
T Consensus 25 ~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~----~a~--~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~ 98 (298)
T PF12719_consen 25 ESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKE----LAK--EHLPLFLQALQKDDEEVKITALKALFDLLLTHGID 98 (298)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChH----HHH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCch
Confidence 35566665 556789999999999999999886542 233 357888888877788999999999987533 22 1
Q ss_pred hhH-------HhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCC---cHHHHH
Q 044293 84 LKQ-------SLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPS---NPAGHH 153 (236)
Q Consensus 84 ~~~-------~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~---~~~~~~ 153 (236)
.-. .......+..+.+.+++. +++++..|+..++.|-....... ....+..|+-+--++. ....+.
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ 174 (298)
T PF12719_consen 99 IFDSESDNDESVDSKSLLKILTKFLDSE-NPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQ 174 (298)
T ss_pred hccchhccCccchHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHH
Confidence 111 122356788888888888 89999999999998876543222 1344555554443331 122333
Q ss_pred HHHH-HHHHhcCCCChHHHHHhCcHHHHHHHhcC
Q 044293 154 LLSS-LAELVQFHGNSTLAVRAGAVSELIHLIGS 186 (236)
Q Consensus 154 a~~a-L~~L~~~~~~~~~~~~~g~i~~lv~ll~~ 186 (236)
++.. +-..|.+....+..+....+|.+-.+.+.
T Consensus 175 ~L~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 175 CLSVFFPVYASSSPENQERLAEAFLPTLRTLSNA 208 (298)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhC
Confidence 3333 44556555444555566666776666654
No 121
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.50 E-value=0.15 Score=39.22 Aligned_cols=111 Identities=17% Similarity=0.138 Sum_probs=79.6
Q ss_pred ChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhh
Q 044293 64 SPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAV 143 (236)
Q Consensus 64 ~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL 143 (236)
++.+|.+++.+++-|+.--.+ ++ ...++.+...|++. ++.+|+.|+.+|.+|...+-.|.. ...+..++..+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~---~v-e~~~~~l~~~L~D~-~~~VR~~al~~Ls~Li~~d~ik~k---~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN---LV-EPYLPNLYKCLRDE-DPLVRKTALLVLSHLILEDMIKVK---GQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH---HH-HhHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHcCceeeh---hhhhHHHHHHH
Confidence 467888999999877653322 22 33688899999988 899999999999999876533322 22337888888
Q ss_pred cCCCcHHHHHHHHHHHHHhcCC-CChHHHHHhCcHHHHHHHhcC
Q 044293 144 SAPSNPAGHHLLSSLAELVQFH-GNSTLAVRAGAVSELIHLIGS 186 (236)
Q Consensus 144 ~~~~~~~~~~a~~aL~~L~~~~-~~~~~~~~~g~i~~lv~ll~~ 186 (236)
.+.++.++..|..++..+.... ++.- ...+|.++.-++.
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~~~~~~i----~~~~~e~i~~l~~ 112 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKKRNPNII----YNNFPELISSLNN 112 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHhccchHH----HHHHHHHHHHHhC
Confidence 8899999999999998888763 2211 3445566665554
No 122
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=96.48 E-value=0.33 Score=42.09 Aligned_cols=199 Identities=13% Similarity=0.159 Sum_probs=130.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCC--------------------------C--------hHHHHHHH
Q 044293 27 KALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSS--------------------------S--------PIIRTLSL 72 (236)
Q Consensus 27 ~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~--------------------------~--------~~~~~~a~ 72 (236)
.|+..|-.+....+..-..|... +|+..+++.+... + ..+.+..+
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~-~G~~~li~rl~~Ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK~lL 81 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNL-NGLDILIDRLQYEVDFALEENKNEEAGSGIPPEYKESSVDGYSISYQRQQLLKSLL 81 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhC-CCHHHHHHHHHHHHHHHHhcccccCCCCCCCCCcccccccccccCHHHHHHHHHHH
Confidence 45566666666655556667776 8888887765421 0 01123334
Q ss_pred HHHHhhCC-CCchh---HHhhh-cccHHHHHHHHhccC--CHHHHHHHHHHHHHhccc-chhhhhhcccCcHHHHHHhhc
Q 044293 73 SILLNLSL-NPDLK---QSLAS-METIYRLNWIIQSSS--SQETVKLASSLICSLAML-DKNKARFGVAGTVQVLVKAVS 144 (236)
Q Consensus 73 ~~L~~l~~-~~~~~---~~i~~-~g~i~~L~~lL~~~~--~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~ 144 (236)
.++..+.. ..... +.+.+ ...+..|..++++.. -+.+-..|+.++..+-.+ +..-..+.+.|.++.+++.+.
T Consensus 82 k~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~ 161 (379)
T PF06025_consen 82 KFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAIT 161 (379)
T ss_pred HHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHh
Confidence 44544444 33322 23445 566777777887653 357777888888876655 466677778999999999998
Q ss_pred -CC---CcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChh------hHHHHHHHHHHHHcC-ChhhHHHH
Q 044293 145 -AP---SNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAE------DLAGTSLAVLNLLAR-FDEGMIAL 213 (236)
Q Consensus 145 -~~---~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~------~~~~~a~~~L~~l~~-~~~~~~~i 213 (236)
.+ +.++...--.+|..+|.+..+.+.+.+.+.++.+++++.+.+.. +.....=..+..|.+ +|.-|..+
T Consensus 162 ~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i 241 (379)
T PF06025_consen 162 AKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDI 241 (379)
T ss_pred ccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHH
Confidence 53 44566666688899999999999999999999999999875321 222333355666775 57888887
Q ss_pred HhcCCcHHHHHHHhh
Q 044293 214 TKTDQIVSLMVDVLK 228 (236)
Q Consensus 214 ~~~g~~i~~lv~~l~ 228 (236)
.+. ++..+-++..
T Consensus 242 ~~~--ii~~l~~l~~ 254 (379)
T PF06025_consen 242 IDA--IIKILDRLVE 254 (379)
T ss_pred HHH--HHHHHHHHHH
Confidence 764 4455544443
No 123
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=96.47 E-value=0.03 Score=42.21 Aligned_cols=143 Identities=15% Similarity=0.092 Sum_probs=90.9
Q ss_pred HHHHHHHhc--CCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCC-CchhH
Q 044293 10 INNCVSRSQ--SDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLN-PDLKQ 86 (236)
Q Consensus 10 i~~lv~~L~--~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~ 86 (236)
+..++..|. ...+++|..++-++..+. +..++.+.+. .-+.+-.++...+.+-...+..++..+-.- ++...
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~~~--~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~ 79 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFKEK--ISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGS 79 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHHHH--HHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHHHH--HHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHH
Confidence 345556664 345567877777777774 3345555432 333333444443333455666777665444 45554
Q ss_pred Hhh-hcccHHHHHHHHh--ccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcC-CCcH-HHHHHHHHHH
Q 044293 87 SLA-SMETIYRLNWIIQ--SSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSA-PSNP-AGHHLLSSLA 159 (236)
Q Consensus 87 ~i~-~~g~i~~L~~lL~--~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~-~~~~a~~aL~ 159 (236)
.+. ..|.++.++.+.. .. +......++.+|..-|.+.+.|..|.+ .+++.|-++.+. .++. ++..|+-+|.
T Consensus 80 ~l~~~eg~~~~l~~~~~~~~~-~~~~~~~~lell~aAc~d~~~r~~I~~-~~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 80 ELFLSEGFLESLLPLASRKSK-DRKVQKAALELLSAACIDKSCRTFISK-NYVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp HHCCTTTHHHHHHHHHH-CTS--HHHHHHHHHHHHHHTTSHHHHHCCHH-HCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHhcccC-CHHHHHHHHHHHHHHHccHHHHHHHHH-HHHHHHHHHHccccchHHHHHHHHHHHh
Confidence 444 7899999999998 44 788888888888888888877777765 558999999964 4444 5666665554
No 124
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=96.45 E-value=0.28 Score=41.69 Aligned_cols=185 Identities=13% Similarity=0.046 Sum_probs=129.1
Q ss_pred HHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCC-chhH-----Hhh-h-cccHHHHHHHHhccCCHHHHHHH
Q 044293 42 YRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNP-DLKQ-----SLA-S-METIYRLNWIIQSSSSQETVKLA 113 (236)
Q Consensus 42 ~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~-~~~~-----~i~-~-~g~i~~L~~lL~~~~~~~~~~~a 113 (236)
....+... |.+..|+..|..-+-+.+..+..+..++-... +++. .+. . ...+..|+.--. ++++-..+
T Consensus 68 La~Ei~~~-dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~---~~dial~~ 143 (335)
T PF08569_consen 68 LAQEIYRS-DLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE---NPDIALNC 143 (335)
T ss_dssp HHHHHHHH-THHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG---STTTHHHH
T ss_pred HHHHHHHh-CHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc---CccccchH
Confidence 34556666 99999999999888899998888888875553 2332 232 2 233333333322 57888889
Q ss_pred HHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHH-hcCCCChHHHHHh---CcHHHHHHHhcCCCh
Q 044293 114 SSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAEL-VQFHGNSTLAVRA---GAVSELIHLIGSTEA 189 (236)
Q Consensus 114 ~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L-~~~~~~~~~~~~~---g~i~~lv~ll~~~~~ 189 (236)
-..|..+..++.....+.....+..+.+.+..++.++...|..++..+ +.++.-...+... ..+...-.||.+++
T Consensus 144 g~mlRec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~N- 222 (335)
T PF08569_consen 144 GDMLRECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSN- 222 (335)
T ss_dssp HHHHHHHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SS-
T ss_pred HHHHHHHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCC-
Confidence 999999999998777888888899999999999999999999999774 4555555555543 34567777887774
Q ss_pred hhHHHHHHHHHHHHcCChhhHHH---HHhcCCcHHHHHHHhhCCc
Q 044293 190 EDLAGTSLAVLNLLARFDEGMIA---LTKTDQIVSLMVDVLKGRS 231 (236)
Q Consensus 190 ~~~~~~a~~~L~~l~~~~~~~~~---i~~~g~~i~~lv~~l~~~~ 231 (236)
--.+.+++..|..+-.++.+... ++.....+..+..+|++.+
T Consensus 223 YvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~s 267 (335)
T PF08569_consen 223 YVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKS 267 (335)
T ss_dssp HHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-
T ss_pred eEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcc
Confidence 67889999999999988877654 4444433556666776654
No 125
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=96.43 E-value=0.45 Score=45.02 Aligned_cols=82 Identities=20% Similarity=0.183 Sum_probs=51.6
Q ss_pred hhhhcccCcHHHHHHhhcCCC--------c--------HHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChh
Q 044293 127 KARFGVAGTVQVLVKAVSAPS--------N--------PAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAE 190 (236)
Q Consensus 127 ~~~i~~~g~i~~Lv~lL~~~~--------~--------~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~ 190 (236)
|..|.+.|++...+++|...- + +....+++.|.-||.++...+.++..+.+|.+-.|=+.....
T Consensus 312 K~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~psLp~iL~lL~GLa~gh~~tQ~~~~~~~l~~lH~LEqvss~~ 391 (802)
T PF13764_consen 312 KDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPSLPYILRLLRGLARGHEPTQLLIAEQLLPLLHRLEQVSSEE 391 (802)
T ss_pred HHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCcHHHHHHHHHHHHhcCHHHHHHHHhhHHHHHHHhhcCCCcc
Confidence 555678899999998886522 2 244788899999999887777777778886555554443223
Q ss_pred hHHHHHHHHHHHHcCChh
Q 044293 191 DLAGTSLAVLNLLARFDE 208 (236)
Q Consensus 191 ~~~~~a~~~L~~l~~~~~ 208 (236)
.+=..|=.+|-.++.+++
T Consensus 392 ~IGslAEnlLeal~~~~~ 409 (802)
T PF13764_consen 392 HIGSLAENLLEALAENED 409 (802)
T ss_pred chHHHHHHHHHHHhcChh
Confidence 333333334444444544
No 126
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=96.41 E-value=0.28 Score=44.71 Aligned_cols=172 Identities=17% Similarity=0.138 Sum_probs=107.6
Q ss_pred CCHHHHHHHHHHHHHHhcCChHHHHHHH---hccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhhhcccHHH
Q 044293 20 DSYEDQQKALQTLASITRVSPQYRSLLA---QTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYR 96 (236)
Q Consensus 20 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~---~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~ 96 (236)
-.++.+.-|+..|+.+..+...+-..+- .+ ..+..++..++ .++..+-.++++|.|+-.++.++..+... ...
T Consensus 556 wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~-~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~--~~~ 631 (745)
T KOG0301|consen 556 WPVEMMFPALDILRLAVKHHSSNSLFCDREEGQ-NLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSR--LES 631 (745)
T ss_pred CCHHHhhhHHHHHHHHHhccchhhhhhhhhhhh-HHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHH--HHH
Confidence 3455677788888888877554433222 22 45666666665 56777888999999999998888887754 333
Q ss_pred HHHHH---hccCCHHHHHHHHHHHHHhcccc--hhhhhhcccCcHHHHHHhhcC---C--CcHHHHHHHHHHHHHhcCCC
Q 044293 97 LNWII---QSSSSQETVKLASSLICSLAMLD--KNKARFGVAGTVQVLVKAVSA---P--SNPAGHHLLSSLAELVQFHG 166 (236)
Q Consensus 97 L~~lL---~~~~~~~~~~~a~~~L~~Ls~~~--~~~~~i~~~g~i~~Lv~lL~~---~--~~~~~~~a~~aL~~L~~~~~ 166 (236)
+.+.+ ++..+..++...+....|.+..- ++.+ .++.+.+...+.. + +.+.....+.||.+|+..+.
T Consensus 632 i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~ 707 (745)
T KOG0301|consen 632 ILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQ----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDA 707 (745)
T ss_pred HhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccH
Confidence 33322 23324556555555555655422 2211 4555666555543 2 22345677788899999998
Q ss_pred ChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHH
Q 044293 167 NSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAV 199 (236)
Q Consensus 167 ~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~ 199 (236)
...++.+.-.+..+++-++........+..+..
T Consensus 708 ~~~~~A~~~~v~sia~~~~~~~~~~~~k~~a~~ 740 (745)
T KOG0301|consen 708 SVIQLAKNRSVDSIAKKLKEAVSNPSGKNIARD 740 (745)
T ss_pred HHHHHHHhcCHHHHHHHHHHhccCchhhHHHHH
Confidence 888888877788888888764333444454444
No 127
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=96.40 E-value=0.05 Score=50.12 Aligned_cols=155 Identities=12% Similarity=0.119 Sum_probs=104.0
Q ss_pred HHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--ChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCC
Q 044293 5 RVRETINNCVSRSQSDSYEDQQKALQTLASITRV--SPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNP 82 (236)
Q Consensus 5 ~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~--~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~ 82 (236)
-+.+.+...+..|++.++.++.+|+..+..++.- ..+--+.+... |.| |-+.|....|++.-..+.+++.+...-
T Consensus 796 ylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~l-Gvv--LyEylgeeypEvLgsILgAikaI~nvi 872 (1172)
T KOG0213|consen 796 YLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHL-GVV--LYEYLGEEYPEVLGSILGAIKAIVNVI 872 (1172)
T ss_pred chHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHh-hHH--HHHhcCcccHHHHHHHHHHHHHHHHhc
Confidence 3466778888899999999999999999887743 11112334444 544 557788888998877777777665433
Q ss_pred ch-hHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcc-cCcHHHHHHhhcCCCcHHHHHHHHHHHH
Q 044293 83 DL-KQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGV-AGTVQVLVKAVSAPSNPAGHHLLSSLAE 160 (236)
Q Consensus 83 ~~-~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~aL~~ 160 (236)
.. +..-=-.|.+|.|.-+|++. ...+++++...+..++..........+ --+-=.|+.+|.+.+...+++|..++..
T Consensus 873 gm~km~pPi~dllPrltPILknr-heKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~ 951 (1172)
T KOG0213|consen 873 GMTKMTPPIKDLLPRLTPILKNR-HEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGY 951 (1172)
T ss_pred cccccCCChhhhcccchHhhhhh-HHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 22 11111368899999999988 789999999999988875422111111 1222346777777777778877777766
Q ss_pred Hhc
Q 044293 161 LVQ 163 (236)
Q Consensus 161 L~~ 163 (236)
++.
T Consensus 952 Iak 954 (1172)
T KOG0213|consen 952 IAK 954 (1172)
T ss_pred HHH
Confidence 553
No 128
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=96.37 E-value=0.14 Score=48.23 Aligned_cols=186 Identities=15% Similarity=0.088 Sum_probs=112.4
Q ss_pred HHHHhccCcHHHHHhhccCC-----ChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhc---cCC----HHHHH
Q 044293 44 SLLAQTDGAISTLLGLSKSS-----SPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQS---SSS----QETVK 111 (236)
Q Consensus 44 ~~i~~~~g~i~~Lv~lL~~~-----~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~---~~~----~~~~~ 111 (236)
..+.+. ||+..+++++.+- ..+.....+.+|..++..+.||+.+.+.|+++.|+..+.. ... .++.+
T Consensus 111 ~v~~~~-gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E 189 (802)
T PF13764_consen 111 SVLAEC-GGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAE 189 (802)
T ss_pred HHhhcC-CCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHH
Confidence 345565 9999999998752 3455667788888999999999999999999999998862 112 45666
Q ss_pred HHHHHHHHhcccchhh-h----hhc--------ccCcHHHHHHhhcCC----CcHHHHHHHHHHHHHhcCCCChHHHHHh
Q 044293 112 LASSLICSLAMLDKNK-A----RFG--------VAGTVQVLVKAVSAP----SNPAGHHLLSSLAELVQFHGNSTLAVRA 174 (236)
Q Consensus 112 ~a~~~L~~Ls~~~~~~-~----~i~--------~~g~i~~Lv~lL~~~----~~~~~~~a~~aL~~L~~~~~~~~~~~~~ 174 (236)
....++-.+....... . ... ...-+..+++.+.++ ++.+....++.|-+|+.....+...+-.
T Consensus 190 ~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~ 269 (802)
T PF13764_consen 190 QLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE 269 (802)
T ss_pred HHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH
Confidence 6666655544332111 1 001 122367777777654 5677788889999999877665543211
Q ss_pred CcHHHHHHHhcCC-----ChhhHHHHHHHHHHHHcCCh---hhHHHHHhcCCcHHHHHHHhhCCcc
Q 044293 175 GAVSELIHLIGST-----EAEDLAGTSLAVLNLLARFD---EGMIALTKTDQIVSLMVDVLKGRSM 232 (236)
Q Consensus 175 g~i~~lv~ll~~~-----~~~~~~~~a~~~L~~l~~~~---~~~~~i~~~g~~i~~lv~~l~~~~~ 232 (236)
-+.+.+++=.-. ++....+..+.+..++-.+. .-|..+++.| ++...++.|...-|
T Consensus 270 -~F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~G-Iv~~a~~YL~~~~P 333 (802)
T PF13764_consen 270 -HFKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESG-IVQDAIDYLLKHFP 333 (802)
T ss_pred -HHHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhh-HHHHHHHHHHHhCc
Confidence 112222211111 11112233333333343333 4577788876 68888887766544
No 129
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=96.37 E-value=0.066 Score=41.27 Aligned_cols=111 Identities=16% Similarity=0.173 Sum_probs=78.8
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-ChHHHHHHHhccCcHHHHHhhccC---------CChHHHHHHHHHHH
Q 044293 7 RETINNCVSRSQSDSYEDQQKALQTLASITRV-SPQYRSLLAQTDGAISTLLGLSKS---------SSPIIRTLSLSILL 76 (236)
Q Consensus 7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~~g~i~~Lv~lL~~---------~~~~~~~~a~~~L~ 76 (236)
......+++.+++..... +.+..|...... ....-+.|.+. ||+..|+.+|.. .+...+..++.++.
T Consensus 65 ~~~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~-~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clk 141 (187)
T PF06371_consen 65 KSSPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLEL-GGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLK 141 (187)
T ss_dssp CHHHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HH-HHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccC-CCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHH
Confidence 345667788886554332 334444433333 33556778887 999999998853 23467788999999
Q ss_pred hhCCCCchhHHhh-hcccHHHHHHHHhccCCHHHHHHHHHHHHHhc
Q 044293 77 NLSLNPDLKQSLA-SMETIYRLNWIIQSSSSQETVKLASSLICSLA 121 (236)
Q Consensus 77 ~l~~~~~~~~~i~-~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls 121 (236)
.+..++.+...+. ..+++..|+..|.+. +..++..++-.|..+|
T Consensus 142 al~n~~~G~~~v~~~~~~v~~i~~~L~s~-~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 142 ALMNTKYGLEAVLSHPDSVNLIALSLDSP-NIKTRKLALEILAALC 186 (187)
T ss_dssp HHTSSHHHHHHHHCSSSHHHHHHHT--TT-SHHHHHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHcCcHHHHHHHHHHCCC-CHHHHHHHHHHHHHHH
Confidence 9999998877776 679999999999988 8999999999998876
No 130
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.30 E-value=0.028 Score=38.72 Aligned_cols=70 Identities=11% Similarity=0.137 Sum_probs=52.9
Q ss_pred cCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHc
Q 044293 133 AGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLA 204 (236)
Q Consensus 133 ~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~ 204 (236)
...+++++..+.+.+.+++..|+.+|++++..-.....-.-...++.|.+++.+.+ +.+ ..++..|.++.
T Consensus 26 ~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d-~~V-r~~a~~Ld~ll 95 (97)
T PF12755_consen 26 DEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD-ENV-RSAAELLDRLL 95 (97)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-hhH-HHHHHHHHHHh
Confidence 57789999999999999999999999999975443332223577888888888874 555 55667776654
No 131
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.20 E-value=0.29 Score=45.49 Aligned_cols=114 Identities=15% Similarity=0.031 Sum_probs=66.8
Q ss_pred CchHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCC
Q 044293 2 SAPRVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLN 81 (236)
Q Consensus 2 ~~~~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~ 81 (236)
|+|-+++..|...+++++.++-++.+|+.+...+-...++.-+. +++..-.+|...++-+.-.++..+..+|..
T Consensus 136 s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~------f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~ 209 (866)
T KOG1062|consen 136 SPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEH------FVIAFRKLLCEKHHGVLIAGLHLITELCKI 209 (866)
T ss_pred CHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHH------hhHHHHHHHhhcCCceeeeHHHHHHHHHhc
Confidence 67777888888888888888889999888888887776654332 445555566555554444444444444443
Q ss_pred -CchhHHhhhcccHHHHHHHHhc----c----------CCHHHHHHHHHHHHHhccc
Q 044293 82 -PDLKQSLASMETIYRLNWIIQS----S----------SSQETVKLASSLICSLAML 123 (236)
Q Consensus 82 -~~~~~~i~~~g~i~~L~~lL~~----~----------~~~~~~~~a~~~L~~Ls~~ 123 (236)
+++-..+.+ .++.|+..|+. + .+|-++.....+|.-|-.+
T Consensus 210 ~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~ 264 (866)
T KOG1062|consen 210 SPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQN 264 (866)
T ss_pred CHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCC
Confidence 222222222 44455544442 0 1455555555555555443
No 132
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.16 E-value=0.062 Score=37.03 Aligned_cols=92 Identities=15% Similarity=0.054 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhcc
Q 044293 25 QQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSS 104 (236)
Q Consensus 25 ~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~ 104 (236)
|..++..|...+..-...-....+ -++++++..+..++.++|..|+.+|+|++..-.....-.=....+.|.+++...
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~--~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLD--EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADP 80 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHH--HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 445666676665442222333333 479999999999999999999999999986543322111245666667776655
Q ss_pred CCHHHHHHHHHHHHHh
Q 044293 105 SSQETVKLASSLICSL 120 (236)
Q Consensus 105 ~~~~~~~~a~~~L~~L 120 (236)
++.++ +++..|-+|
T Consensus 81 -d~~Vr-~~a~~Ld~l 94 (97)
T PF12755_consen 81 -DENVR-SAAELLDRL 94 (97)
T ss_pred -chhHH-HHHHHHHHH
Confidence 45544 555665554
No 133
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=96.11 E-value=0.74 Score=39.13 Aligned_cols=159 Identities=17% Similarity=0.090 Sum_probs=109.5
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhc-CChHHHHHHH-hccCcHHHHHhhccCC-----C--------hHHHHHH
Q 044293 7 RETINNCVSRSQSDSYEDQQKALQTLASITR-VSPQYRSLLA-QTDGAISTLLGLSKSS-----S--------PIIRTLS 71 (236)
Q Consensus 7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~-~~~~~~~~i~-~~~g~i~~Lv~lL~~~-----~--------~~~~~~a 71 (236)
++.+..+-..|.++.+.....++..|..+.. .+....+.+. .-+=-.+.|..++... . +.+|...
T Consensus 55 ~~~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~f 134 (330)
T PF11707_consen 55 QNHLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNF 134 (330)
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHH
Confidence 3456667777777777788889999988887 5544444444 3322334566666432 1 1677777
Q ss_pred HHHHHhhCCC-C-chhHHhh-hcccHHHHHHHHhccCCHHHHHHHHHHHH-Hhcccc----hhhhhhcccCcHHHHHHhh
Q 044293 72 LSILLNLSLN-P-DLKQSLA-SMETIYRLNWIIQSSSSQETVKLASSLIC-SLAMLD----KNKARFGVAGTVQVLVKAV 143 (236)
Q Consensus 72 ~~~L~~l~~~-~-~~~~~i~-~~g~i~~L~~lL~~~~~~~~~~~a~~~L~-~Ls~~~----~~~~~i~~~g~i~~Lv~lL 143 (236)
+..+..+-.. + ..+..+. +.+.+..+.+-|..+ ++++......+|. +...++ ..|..+.....+..|..+-
T Consensus 135 I~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D-~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly 213 (330)
T PF11707_consen 135 IRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKD-PPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLY 213 (330)
T ss_pred HHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCC-CHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHh
Confidence 7766654333 3 3455555 678899999999887 8999999999988 455444 4566666778899999977
Q ss_pred cCCCc----HHHHHHHHHHHHHhcCCC
Q 044293 144 SAPSN----PAGHHLLSSLAELVQFHG 166 (236)
Q Consensus 144 ~~~~~----~~~~~a~~aL~~L~~~~~ 166 (236)
...++ .+...+-..|..+|.++.
T Consensus 214 ~~~~~~~~~~~~~~vh~fL~~lcT~p~ 240 (330)
T PF11707_consen 214 SRDGEDEKSSVADLVHEFLLALCTDPK 240 (330)
T ss_pred cccCCcccchHHHHHHHHHHHHhcCCC
Confidence 77666 677888888888887654
No 134
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=96.10 E-value=0.17 Score=43.80 Aligned_cols=83 Identities=19% Similarity=0.174 Sum_probs=71.4
Q ss_pred CHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhcc-CC---ChHHHHHHHHHHHhhCCCCchhHHhhhcccHHH
Q 044293 21 SYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSK-SS---SPIIRTLSLSILLNLSLNPDLKQSLASMETIYR 96 (236)
Q Consensus 21 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~---~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~ 96 (236)
.+.+-..|+..+..+..++|-.-..+.++ |.++.+++-+. .+ +.++....-.++..+|.+..+.+.+.+.+.++.
T Consensus 122 G~~v~s~a~~ivs~~I~nePT~~~~l~e~-Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~ 200 (379)
T PF06025_consen 122 GPSVFSLAINIVSDFIHNEPTSFSILQEA-GLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDK 200 (379)
T ss_pred chHHHHHHHHHHHHHHhcCCchhHHHHHc-CChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHH
Confidence 46777889999999999988888999998 99999999887 43 456666667889999999999999999999999
Q ss_pred HHHHHhcc
Q 044293 97 LNWIIQSS 104 (236)
Q Consensus 97 L~~lL~~~ 104 (236)
+++++.+.
T Consensus 201 ~f~if~s~ 208 (379)
T PF06025_consen 201 LFEIFTSP 208 (379)
T ss_pred HHHHhCCH
Confidence 99999865
No 135
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.08 E-value=0.092 Score=47.48 Aligned_cols=156 Identities=13% Similarity=0.114 Sum_probs=105.4
Q ss_pred hHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--ChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCC
Q 044293 4 PRVRETINNCVSRSQSDSYEDQQKALQTLASITRV--SPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLN 81 (236)
Q Consensus 4 ~~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~--~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~ 81 (236)
+.....|...+.+|++..+.++..|+.....++.- +..--..+.+. |.| |-+-|....|++.-..+.+++.+-..
T Consensus 600 p~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~kl-g~i--LyE~lge~ypEvLgsil~Ai~~I~sv 676 (975)
T COG5181 600 PHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKL-GNI--LYENLGEDYPEVLGSILKAICSIYSV 676 (975)
T ss_pred cchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHH-hHH--HHHhcCcccHHHHHHHHHHHHHHhhh
Confidence 34567888999999999999999999988777642 11112344555 544 45667777888887777777776554
Q ss_pred CchhH-HhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcc-cCcHHHHHHhhcCCCcHHHHHHHHHHH
Q 044293 82 PDLKQ-SLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGV-AGTVQVLVKAVSAPSNPAGHHLLSSLA 159 (236)
Q Consensus 82 ~~~~~-~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~aL~ 159 (236)
-..+. +-=-.|.+|.|.-+|++. ...+..+....+..++.......-..+ --.--.|+.+|.+.|...+++|..++.
T Consensus 677 ~~~~~mqpPi~~ilP~ltPILrnk-h~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG 755 (975)
T COG5181 677 HRFRSMQPPISGILPSLTPILRNK-HQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFG 755 (975)
T ss_pred hcccccCCchhhccccccHhhhhh-hHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhh
Confidence 33321 111368999999999987 788888888888887775532211111 122345778888888888888887776
Q ss_pred HHhc
Q 044293 160 ELVQ 163 (236)
Q Consensus 160 ~L~~ 163 (236)
.++.
T Consensus 756 ~Is~ 759 (975)
T COG5181 756 CISR 759 (975)
T ss_pred hHHh
Confidence 6554
No 136
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=96.03 E-value=0.58 Score=44.17 Aligned_cols=204 Identities=12% Similarity=0.050 Sum_probs=129.1
Q ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHh
Q 044293 10 INNCVSRSQ-SDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSL 88 (236)
Q Consensus 10 i~~lv~~L~-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i 88 (236)
....+..+. +..+.++..|++++...++. ..-..+. ++++..|..+......++......+|+..+..+.....-
T Consensus 492 l~~~v~~l~~~~~~~~ki~a~~~~~~~~~~--~vl~~~~--p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as 567 (1005)
T KOG2274|consen 492 LNATVNALTMDVPPPVKISAVRAFCGYCKV--KVLLSLQ--PMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAAS 567 (1005)
T ss_pred HHHHHHhhccCCCCchhHHHHHHHHhccCc--eeccccc--hHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhh
Confidence 333444443 34456777788888777742 2333333 578888888888778888888888999888887776766
Q ss_pred hhcccHHHHHHHHh-ccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCC----cHHHHHHHHHHHHHhc
Q 044293 89 ASMETIYRLNWIIQ-SSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPS----NPAGHHLLSSLAELVQ 163 (236)
Q Consensus 89 ~~~g~i~~L~~lL~-~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~----~~~~~~a~~aL~~L~~ 163 (236)
.+.-..|.++.++. ..+|+.+...+--++..|+....+...+. .-.||.+++.|+..+ ......++..|..+.+
T Consensus 568 ~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~-e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr 646 (1005)
T KOG2274|consen 568 MESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQ-ERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLR 646 (1005)
T ss_pred hhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHh
Confidence 67777777777554 33378777778888888888665555543 367999999998765 3445566666665555
Q ss_pred CC-CChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC-ChhhHHHHHhcCC
Q 044293 164 FH-GNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR-FDEGMIALTKTDQ 218 (236)
Q Consensus 164 ~~-~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~ 218 (236)
.. .---...-.-++|++.+..-++++.+...++=.+|..+.. +.+.-.+-...+|
T Consensus 647 ~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g 703 (1005)
T KOG2274|consen 647 NTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPG 703 (1005)
T ss_pred cCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCC
Confidence 32 2222223345677777766444334555566666665443 3333333333444
No 137
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.00 E-value=0.058 Score=49.61 Aligned_cols=172 Identities=13% Similarity=0.089 Sum_probs=102.2
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCch-h
Q 044293 7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDL-K 85 (236)
Q Consensus 7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~-~ 85 (236)
.....-+...+++.++-+|..++-...++-.. ..+.+... |.++.|-+++...+|.+..+|+.+|..+...+.+ -
T Consensus 120 ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~---~~~~~~~~-gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~ 195 (734)
T KOG1061|consen 120 EYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDI---DPDLVEDS-GLVDALKDLLSDSNPMVVANALAALSEIHESHPSVN 195 (734)
T ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHHhhcC---Chhhcccc-chhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCC
Confidence 33455666777888899999888888888654 34556676 9999999999988999999999999988665543 1
Q ss_pred HHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCC
Q 044293 86 QSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFH 165 (236)
Q Consensus 86 ~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~ 165 (236)
......-.+..++..+.. ..-+.-+..|-.++..-- +........+..+...|++.+..+.-.+..++.++....
T Consensus 196 ~~~l~~~~~~~lL~al~e----c~EW~qi~IL~~l~~y~p-~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~ 270 (734)
T KOG1061|consen 196 LLELNPQLINKLLEALNE----CTEWGQIFILDCLAEYVP-KDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYL 270 (734)
T ss_pred cccccHHHHHHHHHHHHH----hhhhhHHHHHHHHHhcCC-CCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHH
Confidence 111123334444444432 222333334444443321 111111345556666666666666666666666665543
Q ss_pred CChHHHHHhCcHHHHHHHhcCC
Q 044293 166 GNSTLAVRAGAVSELIHLIGST 187 (236)
Q Consensus 166 ~~~~~~~~~g~i~~lv~ll~~~ 187 (236)
...........-|+++.++...
T Consensus 271 ~~~~~~~~~K~~~pl~tlls~~ 292 (734)
T KOG1061|consen 271 KQVNELLFKKVAPPLVTLLSSE 292 (734)
T ss_pred HHHHHHHHHHhcccceeeeccc
Confidence 3344444445555555555543
No 138
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=95.98 E-value=0.026 Score=40.20 Aligned_cols=79 Identities=14% Similarity=0.250 Sum_probs=59.0
Q ss_pred hhhhhhcc--cCcHHHHHHhhcC-CCcHHHHHHHHHHHHHhc-CCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHH
Q 044293 125 KNKARFGV--AGTVQVLVKAVSA-PSNPAGHHLLSSLAELVQ-FHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVL 200 (236)
Q Consensus 125 ~~~~~i~~--~g~i~~Lv~lL~~-~~~~~~~~a~~aL~~L~~-~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L 200 (236)
+|...+.+ ...+..|+++|.. .++.+...||.=|+.++. +|.+|..+-+.|+=..++.||.+.+ ++++..|+.++
T Consensus 32 ENa~kf~~~~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d-~eVr~eAL~av 110 (119)
T PF11698_consen 32 ENADKFEENNFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHED-PEVRYEALLAV 110 (119)
T ss_dssp HHSGGGSSGGGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SS-HHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCC-HHHHHHHHHHH
Confidence 45555554 5678999999954 455667778888999998 4566666667899999999999985 89999999988
Q ss_pred HHHc
Q 044293 201 NLLA 204 (236)
Q Consensus 201 ~~l~ 204 (236)
.-+.
T Consensus 111 Qklm 114 (119)
T PF11698_consen 111 QKLM 114 (119)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 139
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.98 E-value=0.12 Score=47.61 Aligned_cols=150 Identities=7% Similarity=0.040 Sum_probs=97.8
Q ss_pred HHHhHHHHHHHHhcC--CC-----HHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHh
Q 044293 5 RVRETINNCVSRSQS--DS-----YEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLN 77 (236)
Q Consensus 5 ~~~~~i~~lv~~L~~--~~-----~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ 77 (236)
+++..+|.|++.|-. ++ ...-..|..+|.-++.- .+..|..+ ++|.+-.-+++++-+.++.++-+...
T Consensus 316 a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~---~~D~Iv~~--Vl~Fiee~i~~pdwr~reaavmAFGS 390 (859)
T KOG1241|consen 316 ALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQC---VGDDIVPH--VLPFIEENIQNPDWRNREAAVMAFGS 390 (859)
T ss_pred HHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHH---hcccchhh--hHHHHHHhcCCcchhhhhHHHHHHHh
Confidence 456789999999932 22 22344455555555432 22233322 44444445677777778888877776
Q ss_pred hCCCCc-hhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhc----ccCcHHHHHHhhcCCCcHHHH
Q 044293 78 LSLNPD-LKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFG----VAGTVQVLVKAVSAPSNPAGH 152 (236)
Q Consensus 78 l~~~~~-~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~----~~g~i~~Lv~lL~~~~~~~~~ 152 (236)
+-..++ .+..-...+++|.++.++... +.-++..++|++..++..-- ..+. -.+.++.++.=|. +.|++..
T Consensus 391 Il~gp~~~~Lt~iV~qalp~ii~lm~D~-sl~VkdTaAwtlgrI~d~l~--e~~~n~~~l~~~l~~l~~gL~-DePrva~ 466 (859)
T KOG1241|consen 391 ILEGPEPDKLTPIVIQALPSIINLMSDP-SLWVKDTAAWTLGRIADFLP--EAIINQELLQSKLSALLEGLN-DEPRVAS 466 (859)
T ss_pred hhcCCchhhhhHHHhhhhHHHHHHhcCc-hhhhcchHHHHHHHHHhhch--hhcccHhhhhHHHHHHHHHhh-hCchHHH
Confidence 655554 455555688999999999866 78888999999999887542 2222 2455555555553 4578889
Q ss_pred HHHHHHHHHhc
Q 044293 153 HLLSSLAELVQ 163 (236)
Q Consensus 153 ~a~~aL~~L~~ 163 (236)
+++|++.+|+.
T Consensus 467 N~CWAf~~Lae 477 (859)
T KOG1241|consen 467 NVCWAFISLAE 477 (859)
T ss_pred HHHHHHHHHHH
Confidence 99999999983
No 140
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=95.90 E-value=0.54 Score=42.12 Aligned_cols=154 Identities=12% Similarity=0.134 Sum_probs=109.0
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCCh----HHHHHHHHHHHhhCCCCc
Q 044293 8 ETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSP----IIRTLSLSILLNLSLNPD 83 (236)
Q Consensus 8 ~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~----~~~~~a~~~L~~l~~~~~ 83 (236)
.....+...+.+++...+..+++.|..++.+ ....+.|... +++..|..++.+++. +....++.+...+-.+.-
T Consensus 83 ~~a~~i~e~l~~~~~~~~~~a~k~l~sls~d-~~fa~efi~~-~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv 160 (713)
T KOG2999|consen 83 HYAKRIMEILTEGNNISKMEALKELDSLSLD-PTFAEEFIRC-SGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV 160 (713)
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHhhcccc-HHHHHHHHhc-chHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce
Confidence 3566788888888888888899999999987 6677888887 899999999987754 445555566655544433
Q ss_pred hhHHhhhcccHHHHHHHHhccC-CHHHHHHHHHHHHHhcccch-hhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHH
Q 044293 84 LKQSLASMETIYRLNWIIQSSS-SQETVKLASSLICSLAMLDK-NKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAEL 161 (236)
Q Consensus 84 ~~~~i~~~g~i~~L~~lL~~~~-~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L 161 (236)
.-.......+|-....+.+-.. +..+...|...|-++...+. ....+.+.--++.|+.+++..+.+....|...+..+
T Consensus 161 vsW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal 240 (713)
T KOG2999|consen 161 VSWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNAL 240 (713)
T ss_pred eeeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 3333334455555555553221 45667778888888877665 455556678899999999998888777776666655
Q ss_pred hc
Q 044293 162 VQ 163 (236)
Q Consensus 162 ~~ 163 (236)
-.
T Consensus 241 ~~ 242 (713)
T KOG2999|consen 241 FR 242 (713)
T ss_pred Hh
Confidence 54
No 141
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.80 E-value=0.93 Score=41.92 Aligned_cols=126 Identities=15% Similarity=0.190 Sum_probs=88.0
Q ss_pred HHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCC-Cch
Q 044293 6 VRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLN-PDL 84 (236)
Q Consensus 6 ~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-~~~ 84 (236)
.|+.-+.++.+|.++-+=+|.+|+-.+..+...+++. +. ..+|.|++-|..+||.++..|..+++.||.. |.|
T Consensus 142 ARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeA---lr---~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkn 215 (877)
T KOG1059|consen 142 ARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEA---LR---PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQN 215 (877)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHh---Hh---hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcc
Confidence 3677788899999888889999999999988765543 33 5699999999999999999999999999985 455
Q ss_pred hHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCC
Q 044293 85 KQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAP 146 (236)
Q Consensus 85 ~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~ 146 (236)
-.. .-|.+.++|.++++-=+.........+|+-.+ ..++ ...+++|..++.+.
T Consensus 216 yL~-----LAP~ffkllttSsNNWmLIKiiKLF~aLtplE---PRLg-KKLieplt~li~sT 268 (877)
T KOG1059|consen 216 YLQ-----LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLE---PRLG-KKLIEPITELMEST 268 (877)
T ss_pred ccc-----ccHHHHHHHhccCCCeehHHHHHHHhhccccC---chhh-hhhhhHHHHHHHhh
Confidence 332 33566666665533334444444444554432 1222 34567777777654
No 142
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=95.79 E-value=0.64 Score=39.30 Aligned_cols=136 Identities=19% Similarity=0.191 Sum_probs=92.4
Q ss_pred HHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhcc-CCChHHHHHHHHHHHhhCCCC--
Q 044293 6 VRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSK-SSSPIIRTLSLSILLNLSLNP-- 82 (236)
Q Consensus 6 ~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~-- 82 (236)
-.+.++.+...+.+.++.+|..|+.+|..+-. +-.++.|+.++. +.+..++..++.+|..+-...
T Consensus 72 ~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~------------~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a~ 139 (335)
T COG1413 72 SEEAVPLLRELLSDEDPRVRDAAADALGELGD------------PEAVPPLVELLENDENEGVRAAAARALGKLGDERAL 139 (335)
T ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC------------hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchhhh
Confidence 35678888999988888888888775555421 135777777777 467777777777777653211
Q ss_pred ----------c--------------hhHH-------hhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhc
Q 044293 83 ----------D--------------LKQS-------LASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFG 131 (236)
Q Consensus 83 ----------~--------------~~~~-------i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~ 131 (236)
. .|.. +.....++.+...+... +..++..|+.+|..+....
T Consensus 140 ~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~~~~~~~l~~~l~~~-~~~vr~~Aa~aL~~~~~~~------- 211 (335)
T COG1413 140 DPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGDPEAIPLLIELLEDE-DADVRRAAASALGQLGSEN------- 211 (335)
T ss_pred HHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCChhhhHHHHHHHhCc-hHHHHHHHHHHHHHhhcch-------
Confidence 1 1221 11334677777777776 6778888888888776654
Q ss_pred ccCcHHHHHHhhcCCCcHHHHHHHHHHHHHh
Q 044293 132 VAGTVQVLVKAVSAPSNPAGHHLLSSLAELV 162 (236)
Q Consensus 132 ~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~ 162 (236)
..+.+.+...+...+..++..++.+|..+-
T Consensus 212 -~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~ 241 (335)
T COG1413 212 -VEAADLLVKALSDESLEVRKAALLALGEIG 241 (335)
T ss_pred -hhHHHHHHHHhcCCCHHHHHHHHHHhcccC
Confidence 356678888888888888877777775543
No 143
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=95.75 E-value=0.13 Score=47.55 Aligned_cols=131 Identities=15% Similarity=0.171 Sum_probs=89.9
Q ss_pred cHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhh---hhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCC-CCh
Q 044293 93 TIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKA---RFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFH-GNS 168 (236)
Q Consensus 93 ~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~---~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~-~~~ 168 (236)
.++.+++.|++. +++++++|+.++..++..-.++. .++..|. .|...|....+++.-..+.|+..++... ..+
T Consensus 800 i~stiL~rLnnk-sa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeeypEvLgsILgAikaI~nvigm~k 876 (1172)
T KOG0213|consen 800 ICSTILWRLNNK-SAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEYPEVLGSILGAIKAIVNVIGMTK 876 (1172)
T ss_pred HHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcccHHHHHHHHHHHHHHHHhccccc
Confidence 466777888888 89999999999998876654443 3344554 4678888888888877777776665422 111
Q ss_pred HHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC-Ch---hhHHHHHhcCCcHHHHHHHhhCCc
Q 044293 169 TLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR-FD---EGMIALTKTDQIVSLMVDVLKGRS 231 (236)
Q Consensus 169 ~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~-~~---~~~~~i~~~g~~i~~lv~~l~~~~ 231 (236)
..==-.|.+|.|..+|++. ++.++++|+..+.-+|. .+ ..|+.++-+= .|+++|+.++
T Consensus 877 m~pPi~dllPrltPILknr-heKVqen~IdLvg~IadrgpE~v~aREWMRIcf----eLlelLkahk 938 (1172)
T KOG0213|consen 877 MTPPIKDLLPRLTPILKNR-HEKVQENCIDLVGTIADRGPEYVSAREWMRICF----ELLELLKAHK 938 (1172)
T ss_pred cCCChhhhcccchHhhhhh-HHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHH----HHHHHHHHHH
Confidence 1111247789999999887 57899999999998884 34 3677776543 3455555443
No 144
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=95.73 E-value=0.97 Score=40.98 Aligned_cols=122 Identities=19% Similarity=0.205 Sum_probs=75.5
Q ss_pred CCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCC-chhHHhhhcccHHHHH
Q 044293 20 DSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNP-DLKQSLASMETIYRLN 98 (236)
Q Consensus 20 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~-~~~~~i~~~g~i~~L~ 98 (236)
++..+.+-|+..|..+..+=|+..+ .+|..+++|....+..+|..|+..|-.+|.+. +....+ ...|+
T Consensus 34 g~~k~K~Laaq~I~kffk~FP~l~~------~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv-----aDvL~ 102 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHFPDLQE------EAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV-----ADVLV 102 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-GGGHH------HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH-----HHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHH------HHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH-----HHHHH
Confidence 5666777788888888776555432 46788888888888899999999999988874 344444 45788
Q ss_pred HHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhc---CCCcHHHHHHHHHHHH
Q 044293 99 WIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVS---APSNPAGHHLLSSLAE 160 (236)
Q Consensus 99 ~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~---~~~~~~~~~a~~aL~~ 160 (236)
++|+++ ++.-...+-.+|..|-..+. .+.+..+...+. +++..+++.++..|..
T Consensus 103 QlL~td-d~~E~~~v~~sL~~ll~~d~-------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~ 159 (556)
T PF05918_consen 103 QLLQTD-DPVELDAVKNSLMSLLKQDP-------KGTLTGLFSQIESSKSGDEQVRERALKFLRE 159 (556)
T ss_dssp HHTT----HHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHH---HS-HHHHHHHHHHHHH
T ss_pred HHHhcc-cHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHhcccCchHHHHHHHHHHHH
Confidence 899877 55545455555554433331 355666666665 4566778888877743
No 145
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=95.72 E-value=0.67 Score=38.72 Aligned_cols=170 Identities=18% Similarity=0.149 Sum_probs=110.3
Q ss_pred CcHHHHH-hhccCCChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhh--
Q 044293 51 GAISTLL-GLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNK-- 127 (236)
Q Consensus 51 g~i~~Lv-~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~-- 127 (236)
+.+..|+ .-+++.++.+|+.++.+|+-+|..+.. ++ ...++.+...++.+ +.+++..|+.+++-+....+..
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~---~a-~~~l~l~~~~~~~~-~~~v~~~al~~l~Dll~~~g~~~~ 100 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKE---LA-KEHLPLFLQALQKD-DEEVKITALKALFDLLLTHGIDIF 100 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChH---HH-HHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcCchhc
Confidence 4455555 557788999999999999988887652 22 23467788888777 8999999999999776543211
Q ss_pred h-------hhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCC--ChhhHHHHHHH
Q 044293 128 A-------RFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGST--EAEDLAGTSLA 198 (236)
Q Consensus 128 ~-------~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~--~~~~~~~~a~~ 198 (236)
. .......+..+.+.+.+.++.++..++..++.|-.+..... ...++..|+-+.-++ .+..-..+++.
T Consensus 101 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~ 177 (298)
T PF12719_consen 101 DSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLS 177 (298)
T ss_pred cchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHH
Confidence 1 12225678888888988888999999999988876554433 223344444444332 11123466666
Q ss_pred HHH-HHcC-ChhhHHHHHhcCCcHHHHHHHhhCC
Q 044293 199 VLN-LLAR-FDEGMIALTKTDQIVSLMVDVLKGR 230 (236)
Q Consensus 199 ~L~-~l~~-~~~~~~~i~~~g~~i~~lv~~l~~~ 230 (236)
... ..+. ++++++.+.+ . .++.+-.+.+..
T Consensus 178 ~Ffp~y~~s~~~~Q~~l~~-~-f~~~l~~~~~~~ 209 (298)
T PF12719_consen 178 VFFPVYASSSPENQERLAE-A-FLPTLRTLSNAP 209 (298)
T ss_pred HHHHHHHcCCHHHHHHHHH-H-HHHHHHHHHhCc
Confidence 655 3454 4556655554 3 367777766653
No 146
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=95.71 E-value=0.67 Score=41.57 Aligned_cols=161 Identities=17% Similarity=0.151 Sum_probs=114.2
Q ss_pred HHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccC---CHHHHHHHHHHHHHhcccchhhhhh
Q 044293 54 STLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSS---SQETVKLASSLICSLAMLDKNKARF 130 (236)
Q Consensus 54 ~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~---~~~~~~~a~~~L~~Ls~~~~~~~~i 130 (236)
..+...+.+++...+-.+..-|..++.++..-..+++..++..|.+++.+++ +.++...+..+...+-.........
T Consensus 86 ~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~~ 165 (713)
T KOG2999|consen 86 KRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWES 165 (713)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeeee
Confidence 4566677777777777788888899999988889999999999999999884 2356666666666666555444444
Q ss_pred cccCcHHHHHHhhcCC--CcHHHHHHHHHHHHHhcCCC-ChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC-C
Q 044293 131 GVAGTVQVLVKAVSAP--SNPAGHHLLSSLAELVQFHG-NSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR-F 206 (236)
Q Consensus 131 ~~~g~i~~Lv~lL~~~--~~~~~~~a~~aL~~L~~~~~-~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~-~ 206 (236)
....+|-....+.... +..+...|+..|-++..... .+..+.+.--+..++..+..++ ..++..|+..+..+.. .
T Consensus 166 ~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n-~~i~~~aial~nal~~~a 244 (713)
T KOG2999|consen 166 VSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSN-QRIQTCAIALLNALFRKA 244 (713)
T ss_pred cccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcc-hHHHHHHHHHHHHHHhhC
Confidence 4456666666666432 23456778888888877655 5556667778999999999885 6777778888877653 3
Q ss_pred h-hhHHHHHh
Q 044293 207 D-EGMIALTK 215 (236)
Q Consensus 207 ~-~~~~~i~~ 215 (236)
+ +-|..+.+
T Consensus 245 ~~~~R~~~~~ 254 (713)
T KOG2999|consen 245 PDDKRFEMAK 254 (713)
T ss_pred ChHHHHHHHH
Confidence 3 44555443
No 147
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.61 E-value=0.42 Score=44.03 Aligned_cols=166 Identities=13% Similarity=0.109 Sum_probs=102.2
Q ss_pred HHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcc
Q 044293 53 ISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGV 132 (236)
Q Consensus 53 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~ 132 (236)
+..|-++|++....+|-.++.-++.|+..+.....+... ...++..|+...|..+++.|.-.|..+|.... ..+|
T Consensus 331 ~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~N-ak~I-- 405 (938)
T KOG1077|consen 331 VNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVSN-AKQI-- 405 (938)
T ss_pred HHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhchhh-HHHH--
Confidence 444445555555555555556666565555444445444 67778888866688999999999999998664 4443
Q ss_pred cCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcC----CCCh----HHHHH-h------CcHHHHHHHhcCCChhhHHHHHH
Q 044293 133 AGTVQVLVKAVSAPSNPAGHHLLSSLAELVQF----HGNS----TLAVR-A------GAVSELIHLIGSTEAEDLAGTSL 197 (236)
Q Consensus 133 ~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~----~~~~----~~~~~-~------g~i~~lv~ll~~~~~~~~~~~a~ 197 (236)
+.-|+++|.+.++..++.-..=.+-|+.. .... -++++ + ++--.+++..-. .++++..|+
T Consensus 406 ---V~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vsdeVW~RvvQiVvN--nedlq~yaa 480 (938)
T KOG1077|consen 406 ---VAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVSDEVWYRVVQIVVN--NEDLQGYAA 480 (938)
T ss_pred ---HHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccHHHHHHhheeEec--chhhhHHHH
Confidence 45677788777766665544333444431 1111 11111 2 233344554443 357889999
Q ss_pred HHHHHHcCChhhHHHHHhcCC-cHHHHHHHhh
Q 044293 198 AVLNLLARFDEGMIALTKTDQ-IVSLMVDVLK 228 (236)
Q Consensus 198 ~~L~~l~~~~~~~~~i~~~g~-~i~~lv~~l~ 228 (236)
..+......+.+-+.|++.|| +...+-.++.
T Consensus 481 k~~fe~Lq~~a~hE~mVKvggyiLGEfg~LIa 512 (938)
T KOG1077|consen 481 KRLFEYLQKPACHENMVKVGGYILGEFGNLIA 512 (938)
T ss_pred HHHHHHHhhhHHHHHHHHhhhhhhhhhhhhhc
Confidence 999988888999999999887 3333334443
No 148
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.61 E-value=0.034 Score=29.53 Aligned_cols=29 Identities=21% Similarity=0.130 Sum_probs=25.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 044293 9 TINNCVSRSQSDSYEDQQKALQTLASITR 37 (236)
Q Consensus 9 ~i~~lv~~L~~~~~~~~~~a~~~L~~l~~ 37 (236)
.+|.+++.++++++++|..|+.+|..++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 37899999999999999999999998875
No 149
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=95.59 E-value=0.23 Score=43.62 Aligned_cols=114 Identities=15% Similarity=0.059 Sum_probs=86.2
Q ss_pred HHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChH-------------HHHHHHhccCcHHHHHhhccCCChHHHHHHH
Q 044293 6 VRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQ-------------YRSLLAQTDGAISTLLGLSKSSSPIIRTLSL 72 (236)
Q Consensus 6 ~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~-------------~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~ 72 (236)
..+.+..|+++|.+ ++....+++.+..+..+.++ +|+.|.. -.+|.|++..+..+.+.+.+-+
T Consensus 269 ~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~--~~~p~L~~~~~~~~~~~k~~yL 344 (415)
T PF12460_consen 269 ATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFT--QVLPKLLEGFKEADDEIKSNYL 344 (415)
T ss_pred HHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHH--HHHHHHHHHHhhcChhhHHHHH
Confidence 35677888888866 55677788888888776332 3666765 4899999998887777788888
Q ss_pred HHHHhhCCCCchhHHhhh-cccHHHHHHHHhccCCHHHHHHHHHHHHHhcccc
Q 044293 73 SILLNLSLNPDLKQSLAS-METIYRLNWIIQSSSSQETVKLASSLICSLAMLD 124 (236)
Q Consensus 73 ~~L~~l~~~~~~~~~i~~-~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~ 124 (236)
.+|.++-.+-......-+ ...+|.+++-|... +.+++..+..+|..+..+.
T Consensus 345 ~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~-~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 345 TALSHLLKNVPKSVLLPELPTLLPLLLQSLSLP-DADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHcC
Confidence 888887776443222323 46999999999888 8899999999999887765
No 150
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.57 E-value=0.024 Score=30.13 Aligned_cols=30 Identities=13% Similarity=0.298 Sum_probs=26.0
Q ss_pred cHHHHHHhhcCCCcHHHHHHHHHHHHHhcC
Q 044293 135 TVQVLVKAVSAPSNPAGHHLLSSLAELVQF 164 (236)
Q Consensus 135 ~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~ 164 (236)
.+|.+++++.++++.++..|+.+|..++.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 378999999999999999999999998753
No 151
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=95.54 E-value=0.053 Score=35.18 Aligned_cols=67 Identities=10% Similarity=0.024 Sum_probs=57.7
Q ss_pred HHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccC
Q 044293 68 RTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAG 134 (236)
Q Consensus 68 ~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g 134 (236)
.+.+++++.|++..+.+-..+.+.+.++.++++.++.....+|-.|.-+|.-++...+..+.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 4678999999999999988888899999999999977578899999999999999888777766544
No 152
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=95.53 E-value=0.35 Score=45.91 Aligned_cols=212 Identities=14% Similarity=0.149 Sum_probs=118.7
Q ss_pred HhHHHHHHHHhcC--CCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCc-
Q 044293 7 RETINNCVSRSQS--DSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPD- 83 (236)
Q Consensus 7 ~~~i~~lv~~L~~--~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~- 83 (236)
......|++-+++ .+..++.-|+-.+..+...-+..- .. +.-..+++-+++++.+++..|.-||.+++...-
T Consensus 816 ~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~----~~-e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~ 890 (1233)
T KOG1824|consen 816 KSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSP----QN-ELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLP 890 (1233)
T ss_pred hhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCc----ch-hhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchH
Confidence 3455566666653 344556667667777665522110 11 334455566777777777777777777766221
Q ss_pred -hhHH----hhh------------------------cccHHHHHHHHhc-cC--CHHHHHHHHHHHHHhcccchhhhhhc
Q 044293 84 -LKQS----LAS------------------------METIYRLNWIIQS-SS--SQETVKLASSLICSLAMLDKNKARFG 131 (236)
Q Consensus 84 -~~~~----i~~------------------------~g~i~~L~~lL~~-~~--~~~~~~~a~~~L~~Ls~~~~~~~~i~ 131 (236)
.-+. |.. ...++.++.+|.. .+ .+.+|--.+.+|..|+..+-
T Consensus 891 ~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~ep------ 964 (1233)
T KOG1824|consen 891 KYLPFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEP------ 964 (1233)
T ss_pred hHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCCh------
Confidence 1111 110 1122233332221 00 12233334444444433221
Q ss_pred ccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChhhHH
Q 044293 132 VAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGMI 211 (236)
Q Consensus 132 ~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~ 211 (236)
...+|.|-..+.++.+..+..+++++...-..+...-.......|.-++.+++++| .+++..|+.++...+++.-
T Consensus 965 -esLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpD-l~VrrvaLvv~nSaahNKp--- 1039 (1233)
T KOG1824|consen 965 -ESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPD-LEVRRVALVVLNSAAHNKP--- 1039 (1233)
T ss_pred -HHHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCc-hhHHHHHHHHHHHHHccCH---
Confidence 45678888888888877777777777554444433333344556778899999985 8899999999988776532
Q ss_pred HHHhcCCcHHHHHHHhhCCcccccC
Q 044293 212 ALTKTDQIVSLMVDVLKGRSMFSKE 236 (236)
Q Consensus 212 ~i~~~g~~i~~lv~~l~~~~~~~k~ 236 (236)
.++. + +.|.++..+-+.++..||
T Consensus 1040 slIr-D-llpeLLp~Ly~eTkvrke 1062 (1233)
T KOG1824|consen 1040 SLIR-D-LLPELLPLLYSETKVRKE 1062 (1233)
T ss_pred hHHH-H-HHHHHHHHHHHhhhhhHh
Confidence 2222 2 456666666666655554
No 153
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.51 E-value=1.1 Score=41.96 Aligned_cols=153 Identities=15% Similarity=0.154 Sum_probs=98.8
Q ss_pred chHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCC--
Q 044293 3 APRVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSL-- 80 (236)
Q Consensus 3 ~~~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~-- 80 (236)
+-+++++-..+++.|+++|..++++|++.+..+... .|-+. .+..|+.+|.+.+++++...+.-+..++.
T Consensus 345 ~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~--~Nv~~------mv~eLl~fL~~~d~~~k~~~as~I~~laEkf 416 (866)
T KOG1062|consen 345 PTAVQRHRSTILECLKDPDVSIKRRALELSYALVNE--SNVRV------MVKELLEFLESSDEDFKADIASKIAELAEKF 416 (866)
T ss_pred cHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcc--ccHHH------HHHHHHHHHHhccHHHHHHHHHHHHHHHHhc
Confidence 345678888999999999999999999999999875 45443 45567788877788888877777766644
Q ss_pred CCchhHH-------------hhhcccHHHHHHHHhcc-C-----------------------CHHHHHHHHHHHHHhc--
Q 044293 81 NPDLKQS-------------LASMETIYRLNWIIQSS-S-----------------------SQETVKLASSLICSLA-- 121 (236)
Q Consensus 81 ~~~~~~~-------------i~~~g~i~~L~~lL~~~-~-----------------------~~~~~~~a~~~L~~Ls-- 121 (236)
.|+++.. ++..+.+..++.++.++ . .+....-|.|+|..=.
T Consensus 417 aP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdl 496 (866)
T KOG1062|consen 417 APDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDL 496 (866)
T ss_pred CCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHH
Confidence 3555543 23456777777777665 0 1122233444444211
Q ss_pred -ccchh---hhhhcccCcHHHHHHhhcCC--CcHHHHHHHHHHHHHhc
Q 044293 122 -MLDKN---KARFGVAGTVQVLVKAVSAP--SNPAGHHLLSSLAELVQ 163 (236)
Q Consensus 122 -~~~~~---~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~aL~~L~~ 163 (236)
.+..+ -..+.+..++..|-+++.+. +..++.+++.||..|+.
T Consensus 497 ll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSs 544 (866)
T KOG1062|consen 497 LLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSS 544 (866)
T ss_pred hhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHh
Confidence 11111 11222356677777777653 34567889999988886
No 154
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.41 E-value=0.2 Score=41.55 Aligned_cols=145 Identities=10% Similarity=0.126 Sum_probs=102.9
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhH
Q 044293 7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQ 86 (236)
Q Consensus 7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~ 86 (236)
+..+...+..|.+.+++..+.++..|+.|+..+++......+ -+|..+++-+++....+.+.|+.++..+...-++..
T Consensus 87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~--~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i 164 (334)
T KOG2933|consen 87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH--EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSI 164 (334)
T ss_pred HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH--HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888899999999999999999999887776666654 478888998988888888888888887765433322
Q ss_pred HhhhcccHHHHH-HHHhccC--CHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhc
Q 044293 87 SLASMETIYRLN-WIIQSSS--SQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQ 163 (236)
Q Consensus 87 ~i~~~g~i~~L~-~lL~~~~--~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~ 163 (236)
.- .+..++ .++.... +.-+++.|-.+|..+...-.. .-+++.|+..++..++.++..++.+..+...
T Consensus 165 ~~----~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp------~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~ 234 (334)
T KOG2933|consen 165 DQ----ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP------QKLLRKLIPILQHSNPRVRAKAALCFSRCVI 234 (334)
T ss_pred HH----HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh------HHHHHHHHHHHhhhchhhhhhhhccccccce
Confidence 21 233333 3443331 345788888888888776542 2346777777888888888877776655443
No 155
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.28 E-value=0.74 Score=42.97 Aligned_cols=170 Identities=11% Similarity=0.096 Sum_probs=111.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhhh
Q 044293 11 NNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLAS 90 (236)
Q Consensus 11 ~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~ 90 (236)
..|..+|.++......+|.+.|..+...+.+ + . ..+|..|+-..+.+.++++..---|..-|...++-..+
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~d-----v-S-~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL-- 108 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGKD-----V-S-LLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL-- 108 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhcCCc-----H-H-HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee--
Confidence 4688999888888888898887766655443 2 2 57888888888999999887766666666655553333
Q ss_pred cccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhc-CCCChH
Q 044293 91 METIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQ-FHGNST 169 (236)
Q Consensus 91 ~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~-~~~~~~ 169 (236)
-|..+-+-|+.. ++.+|..|.++|..+ |..+...=.+-++-+...+.++.+++.|+.|+-.|=+ .++.+.
T Consensus 109 --SIntfQk~L~Dp-N~LiRasALRvlSsI------Rvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~ 179 (968)
T KOG1060|consen 109 --SINTFQKALKDP-NQLIRASALRVLSSI------RVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKD 179 (968)
T ss_pred --eHHHHHhhhcCC-cHHHHHHHHHHHHhc------chhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHH
Confidence 467788888888 899998877776543 2232222223334455567788999999999977765 445555
Q ss_pred HHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHc
Q 044293 170 LAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLA 204 (236)
Q Consensus 170 ~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~ 204 (236)
++. ..+=.||.+.+ +.+.-.|+.+...+|
T Consensus 180 qL~-----e~I~~LLaD~s-plVvgsAv~AF~evC 208 (968)
T KOG1060|consen 180 QLE-----EVIKKLLADRS-PLVVGSAVMAFEEVC 208 (968)
T ss_pred HHH-----HHHHHHhcCCC-CcchhHHHHHHHHhc
Confidence 443 34444555543 444455555544433
No 156
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=95.22 E-value=0.12 Score=39.82 Aligned_cols=78 Identities=12% Similarity=0.077 Sum_probs=62.9
Q ss_pred hHHhhhcccHHHHHHHHhcc--------CCHHHHHHHHHHHHHhcccchhhhhhcc-cCcHHHHHHhhcCCCcHHHHHHH
Q 044293 85 KQSLASMETIYRLNWIIQSS--------SSQETVKLASSLICSLAMLDKNKARFGV-AGTVQVLVKAVSAPSNPAGHHLL 155 (236)
Q Consensus 85 ~~~i~~~g~i~~L~~lL~~~--------~~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~ 155 (236)
-..+++.||+..|+.+|..- .+.+....+..+|..+.........+.. .+++..|+..|.+.+..++..++
T Consensus 100 v~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~l 179 (187)
T PF06371_consen 100 VQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLAL 179 (187)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHH
T ss_pred HHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHH
Confidence 56777899999999998742 2457778899999999888876666665 89999999999999999999999
Q ss_pred HHHHHHh
Q 044293 156 SSLAELV 162 (236)
Q Consensus 156 ~aL~~L~ 162 (236)
..|..+|
T Consensus 180 eiL~~lc 186 (187)
T PF06371_consen 180 EILAALC 186 (187)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999887
No 157
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=95.09 E-value=0.074 Score=42.19 Aligned_cols=147 Identities=16% Similarity=0.085 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCC-----ChHHHHHHHHHHHhhCCCCch--hHHhhhcccHH
Q 044293 23 EDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSS-----SPIIRTLSLSILLNLSLNPDL--KQSLASMETIY 95 (236)
Q Consensus 23 ~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~-----~~~~~~~a~~~L~~l~~~~~~--~~~i~~~g~i~ 95 (236)
...+.|+..|+.++.+ ++.|..|.++ -+--.+-.+|... .+-.|-.+++++..+.++++- ...+.....+|
T Consensus 115 nRvcnaL~lLQclaSh-Petk~~Fl~A-hiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivP 192 (315)
T COG5209 115 NRVCNALNLLQCLASH-PETKKVFLDA-HIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVP 192 (315)
T ss_pred hHHHHHHHHHHHHhcC-cchheeeeec-ccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHH
Confidence 3456788888888886 8889888876 4333333555432 234577788999998887643 44455788999
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhh----cc----cCcHHHHHHh-hcCCCcHHHHHHHHHHHHHhcCCC
Q 044293 96 RLNWIIQSSSSQETVKLASSLICSLAMLDKNKARF----GV----AGTVQVLVKA-VSAPSNPAGHHLLSSLAELVQFHG 166 (236)
Q Consensus 96 ~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i----~~----~g~i~~Lv~l-L~~~~~~~~~~a~~aL~~L~~~~~ 166 (236)
..++++..+ ++-.+.-|+-++..+-.++..-.-+ .+ +..+.-++.. ...++.+..++++++-..||..+.
T Consensus 193 LcLrIme~g-SElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~ 271 (315)
T COG5209 193 LCLRIMELG-SELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPH 271 (315)
T ss_pred HHHHHHHhh-hHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHh
Confidence 999999998 5666666776666666665443332 22 2333333332 234677888999999888888887
Q ss_pred ChHHHH
Q 044293 167 NSTLAV 172 (236)
Q Consensus 167 ~~~~~~ 172 (236)
.|..+.
T Consensus 272 aR~lL~ 277 (315)
T COG5209 272 ARALLS 277 (315)
T ss_pred HHHHHh
Confidence 776653
No 158
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.02 E-value=0.19 Score=46.52 Aligned_cols=155 Identities=17% Similarity=0.261 Sum_probs=110.1
Q ss_pred HHHhHHHHHHHHhcCCCHH-HHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCc
Q 044293 5 RVRETINNCVSRSQSDSYE-DQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPD 83 (236)
Q Consensus 5 ~~~~~i~~lv~~L~~~~~~-~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~ 83 (236)
+..+.++.+.+.+...... ..-+++.++.+|+..+...|+.+.+. -+++.+-.++...++..|..++..+.||..++.
T Consensus 538 ~~~~v~~~~~s~~~~d~~~~en~E~L~altnLas~s~s~r~~i~ke-~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~ 616 (748)
T KOG4151|consen 538 RSYEVVKPLDSALHNDEKGLENFEALEALTNLASISESDRQKILKE-KALGKIEELMTEENPALQRAALESIINLLWSPL 616 (748)
T ss_pred chhhhhhhhcchhhhhHHHHHHHHHHHHhhcccCcchhhHHHHHHH-hcchhhHHHhhcccHHHHHHHHHHHHHHHhhHH
Confidence 3455566665555433322 23468999999999888888888887 788888888888899999999999999999987
Q ss_pred h-hHHhhh-cccHHHHHHHHhccCCHHHHHHHHHHHHHhcc-cchhhhhhcc-cCcHHHHHHhhcCCCcHHHHHHHHHHH
Q 044293 84 L-KQSLAS-METIYRLNWIIQSSSSQETVKLASSLICSLAM-LDKNKARFGV-AGTVQVLVKAVSAPSNPAGHHLLSSLA 159 (236)
Q Consensus 84 ~-~~~i~~-~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~-~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~aL~ 159 (236)
. ...+++ ...++.....+... +......+++++.-++. +...+..+.+ ..+...++.++.++++.++...+....
T Consensus 617 ~~e~si~e~~~~l~~w~~~~e~~-~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~l 695 (748)
T KOG4151|consen 617 LYERSIVEYKDRLKLWNLNLEVA-DEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIIL 695 (748)
T ss_pred HHHHHhhccccCchHHHHHHHhh-hhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhh
Confidence 5 555665 56776666666654 56666667777664433 3333442333 677899999999998888777776666
Q ss_pred HH
Q 044293 160 EL 161 (236)
Q Consensus 160 ~L 161 (236)
|+
T Consensus 696 n~ 697 (748)
T KOG4151|consen 696 NL 697 (748)
T ss_pred hH
Confidence 53
No 159
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=94.93 E-value=0.24 Score=39.40 Aligned_cols=146 Identities=12% Similarity=0.041 Sum_probs=97.4
Q ss_pred HHHHHHHHhhCCCCchhHHhhhcccH---HHHHHHHhccC-CHHHHHHHHHHHHHhcccch--hhhhhcccCcHHHHHHh
Q 044293 69 TLSLSILLNLSLNPDLKQSLASMETI---YRLNWIIQSSS-SQETVKLASSLICSLAMLDK--NKARFGVAGTVQVLVKA 142 (236)
Q Consensus 69 ~~a~~~L~~l~~~~~~~~~i~~~g~i---~~L~~lL~~~~-~~~~~~~a~~~L~~Ls~~~~--~~~~i~~~g~i~~Lv~l 142 (236)
-+|+.+|..++.+|+.|..+.+...- -+++....+.+ -+-.+..+.+++..|..+++ .-..+.....+|.++++
T Consensus 118 cnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrI 197 (315)
T COG5209 118 CNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRI 197 (315)
T ss_pred HHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHH
Confidence 46777777899999999988876533 33333333322 23466789999999988774 33444568999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHhcCCCChHHHHH----h----CcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChhhHHHHH
Q 044293 143 VSAPSNPAGHHLLSSLAELVQFHGNSTLAVR----A----GAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGMIALT 214 (236)
Q Consensus 143 L~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~----~----g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~ 214 (236)
+..++..-+.-|+-.+..+-.++.+-+.+++ . .++..++.-+-+.....+.+.++++-..|+.++..|..+.
T Consensus 198 me~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR~lL~ 277 (315)
T COG5209 198 MELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHARALLS 277 (315)
T ss_pred HHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHHHHHh
Confidence 9998866666666556555555555444433 2 2334444444332235678999999999999998888765
No 160
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.91 E-value=1.7 Score=42.34 Aligned_cols=178 Identities=15% Similarity=0.131 Sum_probs=102.3
Q ss_pred cCCCHHHHHHHHHHHHHHhcCC-hHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCC-----CCch-hHHhhh
Q 044293 18 QSDSYEDQQKALQTLASITRVS-PQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSL-----NPDL-KQSLAS 90 (236)
Q Consensus 18 ~~~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~-----~~~~-~~~i~~ 90 (236)
++.+...+...+.+|..+-... .++...+.+. ||.++-++...+...+..+..+|..+.. ++.+ + .
T Consensus 707 qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~---I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~----~ 779 (1176)
T KOG1248|consen 707 QSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKL---IPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP----A 779 (1176)
T ss_pred hccchHHHHHHHHHHHHHHHhccHHHHHHHHHH---HHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc----h
Confidence 3444556666666666655443 3555555543 5555555577788888888888887763 1111 2 1
Q ss_pred cccHHHHHHHHhccC-CHHHHHHHHHHHHHhcccc-hhhhhhcc---cCcHHHHHHhhcCCCcHHHHHHHHHHHHHhc-C
Q 044293 91 METIYRLNWIIQSSS-SQETVKLASSLICSLAMLD-KNKARFGV---AGTVQVLVKAVSAPSNPAGHHLLSSLAELVQ-F 164 (236)
Q Consensus 91 ~g~i~~L~~lL~~~~-~~~~~~~a~~~L~~Ls~~~-~~~~~i~~---~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~-~ 164 (236)
...|..++..+..+. ..+.+..+.. |..+...- +.+..+.+ .+.+..+...|.+.++.+.+.|+..+..++. .
T Consensus 780 ~~~lnefl~~Isagl~gd~~~~~as~-Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~ 858 (1176)
T KOG1248|consen 780 SAILNEFLSIISAGLVGDSTRVVASD-IVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKF 858 (1176)
T ss_pred HHHHHHHHHHHHhhhcccHHHHHHHH-HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcC
Confidence 225666666666541 1233333333 33332221 32333322 4555555566677888999999999988886 4
Q ss_pred CCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHc
Q 044293 165 HGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLA 204 (236)
Q Consensus 165 ~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~ 204 (236)
++.+-.-...-.+|.+..+.++.. ..++...-..|.-|.
T Consensus 859 pe~~l~~~~~~LL~sll~ls~d~k-~~~r~Kvr~LlekLi 897 (1176)
T KOG1248|consen 859 PEECLSPHLEELLPSLLALSHDHK-IKVRKKVRLLLEKLI 897 (1176)
T ss_pred CHHHHhhhHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHH
Confidence 565655555667888888777652 444444444444444
No 161
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.82 E-value=0.77 Score=42.84 Aligned_cols=174 Identities=14% Similarity=0.152 Sum_probs=102.2
Q ss_pred hHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCc
Q 044293 4 PRVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPD 83 (236)
Q Consensus 4 ~~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~ 83 (236)
+|.+-.++..-.+|++.++.+...++.+.+.++-.+ + .. .+++.|+.+|++ ++++|.-.+..+..++....
T Consensus 283 ~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~---~----~~-~i~kaLvrLLrs-~~~vqyvvL~nIa~~s~~~~ 353 (968)
T KOG1060|consen 283 PDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN---Q----VT-KIAKALVRLLRS-NREVQYVVLQNIATISIKRP 353 (968)
T ss_pred ccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH---H----HH-HHHHHHHHHHhc-CCcchhhhHHHHHHHHhcch
Confidence 355666777777888999999999999999998642 1 12 678999999977 44666666666666554322
Q ss_pred hhHHhhhcccHHHHHHH--HhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHH
Q 044293 84 LKQSLASMETIYRLNWI--IQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAEL 161 (236)
Q Consensus 84 ~~~~i~~~g~i~~L~~l--L~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L 161 (236)
+.-.+-++- +.+.+...++..-...|.+|+....... .++.+-.++++.+......|+.+|+.+
T Consensus 354 --------~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~------ILrE~q~YI~s~d~~faa~aV~AiGrC 419 (968)
T KOG1060|consen 354 --------TLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISE------ILRELQTYIKSSDRSFAAAAVKAIGRC 419 (968)
T ss_pred --------hhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHH------HHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 222222221 1122134455556666666665443222 245566666666555666666777666
Q ss_pred hcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC
Q 044293 162 VQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR 205 (236)
Q Consensus 162 ~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~ 205 (236)
+..-.. +..-++..|+.++++.+ ..+...++.++.-|..
T Consensus 420 A~~~~s----v~~tCL~gLv~Llsshd-e~Vv~eaV~vIk~Llq 458 (968)
T KOG1060|consen 420 ASRIGS----VTDTCLNGLVQLLSSHD-ELVVAEAVVVIKRLLQ 458 (968)
T ss_pred HHhhCc----hhhHHHHHHHHHHhccc-chhHHHHHHHHHHHHh
Confidence 542211 12234566777776653 4455556666655554
No 162
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=94.76 E-value=0.9 Score=41.08 Aligned_cols=77 Identities=17% Similarity=0.098 Sum_probs=54.9
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhH
Q 044293 7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQ 86 (236)
Q Consensus 7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~ 86 (236)
.+..|.|-+-|++.-+.++.++++++..++..+ ....+.+. .|..|-.+|++.....|-.|.++|..++.....+-
T Consensus 263 ~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~n--v~~~~~~~--~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv 338 (898)
T COG5240 263 LQLRPFLNSWLSDKFEMVFLEAARAVCALSEEN--VGSQFVDQ--TVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKV 338 (898)
T ss_pred HHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhc--cCHHHHHH--HHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCcee
Confidence 344455555555656789999999999988764 23334443 67888888888888889999999999988654443
Q ss_pred H
Q 044293 87 S 87 (236)
Q Consensus 87 ~ 87 (236)
.
T Consensus 339 ~ 339 (898)
T COG5240 339 S 339 (898)
T ss_pred e
Confidence 3
No 163
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.58 E-value=0.35 Score=44.17 Aligned_cols=197 Identities=13% Similarity=0.105 Sum_probs=110.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC------hHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCC
Q 044293 9 TINNCVSRSQSDSYEDQQKALQTLASITRVS------PQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNP 82 (236)
Q Consensus 9 ~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~------~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~ 82 (236)
.....++.++++..++|..|++.+..++.-. ......... .++..+...++..+-.+|..|+.+|..+-...
T Consensus 235 ~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D--~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vS 312 (823)
T KOG2259|consen 235 CYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKD--AAFSSVCRAVRDRSLSVRVEAAKALGEFEQVS 312 (823)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHH--HHHHHHHHHHhcCceeeeehHHHHhchHHHhH
Confidence 3566777888888888888877766554332 112222322 35555655555544344444444444332111
Q ss_pred c---------------------------------------------------hhHHhhhcccHHHHHHHHhccCCHHHHH
Q 044293 83 D---------------------------------------------------LKQSLASMETIYRLNWIIQSSSSQETVK 111 (236)
Q Consensus 83 ~---------------------------------------------------~~~~i~~~g~i~~L~~lL~~~~~~~~~~ 111 (236)
+ .-..|+..|+=..++.=|... -.|+++
T Consensus 313 ee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDE-f~EVR~ 391 (823)
T KOG2259|consen 313 EEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDE-FYEVRR 391 (823)
T ss_pred HHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHH-HHHHHH
Confidence 1 111233445555566555544 568999
Q ss_pred HHHHHHHHhcccc-hhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCCChHH----HHH----h--C---cH
Q 044293 112 LASSLICSLAMLD-KNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTL----AVR----A--G---AV 177 (236)
Q Consensus 112 ~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~----~~~----~--g---~i 177 (236)
.|...++.|+.+. +.. ...+..|+.++.+....++..|+.+|..++.+-.-++. +.+ . + ++
T Consensus 392 AAV~Sl~~La~ssP~FA-----~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~i~eeql~~il~~L~D~s~dvRe~l 466 (823)
T KOG2259|consen 392 AAVASLCSLATSSPGFA-----VRALDFLVDMFNDEIEVVRLKAIFALTMISVHLAIREEQLRQILESLEDRSVDVREAL 466 (823)
T ss_pred HHHHHHHHHHcCCCCcH-----HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHheecHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999999887643 221 34688999999998888999999998888775322211 111 0 1 11
Q ss_pred HHHHHHhcCCChhhHHHHHH-HHHHHHcCChhhHHHHH
Q 044293 178 SELIHLIGSTEAEDLAGTSL-AVLNLLARFDEGMIALT 214 (236)
Q Consensus 178 ~~lv~ll~~~~~~~~~~~a~-~~L~~l~~~~~~~~~i~ 214 (236)
.-|+...+-.+ .+..+.|+ ..|.||...|..|..++
T Consensus 467 ~elL~~~~~~d-~~~i~m~v~~lL~~L~kyPqDrd~i~ 503 (823)
T KOG2259|consen 467 RELLKNARVSD-LECIDMCVAHLLKNLGKYPQDRDEIL 503 (823)
T ss_pred HHHHHhcCCCc-HHHHHHHHHHHHHHhhhCCCCcHHHH
Confidence 22222333333 34445544 55667887776666654
No 164
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=94.56 E-value=1.4 Score=39.12 Aligned_cols=131 Identities=11% Similarity=0.126 Sum_probs=89.6
Q ss_pred HHhhccCCChHHHHHHHHHHHhhCCCCc----hhHHhhhcccHHHHHHHHhccC----C-HH-HHHHHHHHHHHhcccch
Q 044293 56 LLGLSKSSSPIIRTLSLSILLNLSLNPD----LKQSLASMETIYRLNWIIQSSS----S-QE-TVKLASSLICSLAMLDK 125 (236)
Q Consensus 56 Lv~lL~~~~~~~~~~a~~~L~~l~~~~~----~~~~i~~~g~i~~L~~lL~~~~----~-~~-~~~~a~~~L~~Ls~~~~ 125 (236)
+..++...+.+-+-.++-....++++++ +|..+.+.-|-+.+-++|.+.+ . +. .+.-+...|.-+|..++
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 3445555554445445555556666554 4777878877777888887642 2 23 34456677777888876
Q ss_pred hhhhhcccCcHHHHHHhhcCCC-cH------HHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcC
Q 044293 126 NKARFGVAGTVQVLVKAVSAPS-NP------AGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGS 186 (236)
Q Consensus 126 ~~~~i~~~g~i~~Lv~lL~~~~-~~------~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~ 186 (236)
-..+=.--+.||.|..++..+. ++ ....+-.+|+..+.++.+...++..|+++.+-+.-..
T Consensus 96 lAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~ 163 (698)
T KOG2611|consen 96 LASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYEL 163 (698)
T ss_pred hccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhC
Confidence 4433222567999999997642 22 5678889999999999999999999999998865543
No 165
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=94.48 E-value=1.8 Score=36.39 Aligned_cols=149 Identities=17% Similarity=0.126 Sum_probs=84.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--ChHHHHHHHhccCcHHHHHhhccCCC--hHHHHHHHHHHHhhCC---C
Q 044293 9 TINNCVSRSQSDSYEDQQKALQTLASITRV--SPQYRSLLAQTDGAISTLLGLSKSSS--PIIRTLSLSILLNLSL---N 81 (236)
Q Consensus 9 ~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~--~~~~~~~i~~~~g~i~~Lv~lL~~~~--~~~~~~a~~~L~~l~~---~ 81 (236)
.+..+.+-++.+..+.+.-|+.++.-++-. .......+.+ ...|.|...+..+. +..|..++.+|.-++. .
T Consensus 87 L~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~--~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~ 164 (309)
T PF05004_consen 87 LLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFE--ELKPVLKRILTDSSASPKARAACLEALAICTFVGGS 164 (309)
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHH--HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcC
Confidence 355556666777777788888887777655 1233455554 47889988887553 4555555555554433 2
Q ss_pred C-chhHHhhhcccHHH--HHHHHhccC---------CHHHHHHHHHHHHHhc-ccchhhhhhcccCcHHHHHHhhcCCCc
Q 044293 82 P-DLKQSLASMETIYR--LNWIIQSSS---------SQETVKLASSLICSLA-MLDKNKARFGVAGTVQVLVKAVSAPSN 148 (236)
Q Consensus 82 ~-~~~~~i~~~g~i~~--L~~lL~~~~---------~~~~~~~a~~~L~~Ls-~~~~~~~~i~~~g~i~~Lv~lL~~~~~ 148 (236)
+ +.-.... ..+.. .....+.+. ++.+...|..+...|. ..+..+..-.-...+|.|+.+|.+.+.
T Consensus 165 d~~~~~~~~--~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~ 242 (309)
T PF05004_consen 165 DEEETEELM--ESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDV 242 (309)
T ss_pred ChhHHHHHH--HHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 2 2222111 22221 111222211 2456666666655543 333321111114679999999999999
Q ss_pred HHHHHHHHHHHHH
Q 044293 149 PAGHHLLSSLAEL 161 (236)
Q Consensus 149 ~~~~~a~~aL~~L 161 (236)
.++..|-.+|+-|
T Consensus 243 ~VRiAAGEaiAll 255 (309)
T PF05004_consen 243 DVRIAAGEAIALL 255 (309)
T ss_pred HHHHHHHHHHHHH
Confidence 9988887776544
No 166
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=94.47 E-value=1.3 Score=41.58 Aligned_cols=151 Identities=11% Similarity=0.071 Sum_probs=97.1
Q ss_pred HHHhhCCC-CchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHH--HHHHhhcCCCc-H
Q 044293 74 ILLNLSLN-PDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQ--VLVKAVSAPSN-P 149 (236)
Q Consensus 74 ~L~~l~~~-~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~--~Lv~lL~~~~~-~ 149 (236)
+|+++... ++++..+.+.||+..+.+.++..+..+....+.+.+.+++.....+........+. .+-.++...+. +
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 34455444 45688899999999999999977578899999999999998876555544322222 33334444443 5
Q ss_pred HHHHHHHHHHHHhcCCC------------------------ChHHHHHhCcHHH-HHHHhcCCChhhHHHHHHHHHHHHc
Q 044293 150 AGHHLLSSLAELVQFHG------------------------NSTLAVRAGAVSE-LIHLIGSTEAEDLAGTSLAVLNLLA 204 (236)
Q Consensus 150 ~~~~a~~aL~~L~~~~~------------------------~~~~~~~~g~i~~-lv~ll~~~~~~~~~~~a~~~L~~l~ 204 (236)
.-..++..|+.+..+.+ ....+.-..-+.+ +..++..+..+..+--|+.++.++.
T Consensus 574 rsY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~~ 653 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNVL 653 (699)
T ss_pred HHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHHH
Confidence 55677777776655311 1111111222334 5566665544566778999999988
Q ss_pred C-ChhhHHHHHhcCCcHHHHHH
Q 044293 205 R-FDEGMIALTKTDQIVSLMVD 225 (236)
Q Consensus 205 ~-~~~~~~~i~~~g~~i~~lv~ 225 (236)
. ++++...+...++ ++.+.+
T Consensus 654 ~~~~~~~~~~~~~~~-~~~~~~ 674 (699)
T KOG3665|consen 654 EQNKEYCKLVRESNG-FELIEN 674 (699)
T ss_pred HcChhhhhhhHhccc-hhhhhh
Confidence 5 6777777878776 566554
No 167
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=94.37 E-value=0.4 Score=39.31 Aligned_cols=173 Identities=20% Similarity=0.162 Sum_probs=108.2
Q ss_pred cHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhhhc-c-cHHHHHHHHhccC---CHHHHHHHHHHHHHhcccchh
Q 044293 52 AISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASM-E-TIYRLNWIIQSSS---SQETVKLASSLICSLAMLDKN 126 (236)
Q Consensus 52 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~-g-~i~~L~~lL~~~~---~~~~~~~a~~~L~~Ls~~~~~ 126 (236)
....+...+.+..++.+--++.++.-+..++..-..+... + ....+...+..+. .+..+-.+++++.|+-.+...
T Consensus 64 ~~~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~ 143 (268)
T PF08324_consen 64 WLILLLKILLSWPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPG 143 (268)
T ss_dssp HHHHHHHHHCCS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHhCCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCcc
Confidence 4566666665554455677888999889998876666533 2 3455555555432 567777899999999888888
Q ss_pred hhhhcc-cC-cHHHHHHhhcCC----CcHHHHHHHHHHHHHhcC--CCChHHHHHhCcHHHHHHHh-cCCChhhHHHHHH
Q 044293 127 KARFGV-AG-TVQVLVKAVSAP----SNPAGHHLLSSLAELVQF--HGNSTLAVRAGAVSELIHLI-GSTEAEDLAGTSL 197 (236)
Q Consensus 127 ~~~i~~-~g-~i~~Lv~lL~~~----~~~~~~~a~~aL~~L~~~--~~~~~~~~~~g~i~~lv~ll-~~~~~~~~~~~a~ 197 (236)
+..+.. .+ .+...+.-+... +..++..++..+.|++.. ......-.+...+..+++.+ ....+++..-.++
T Consensus 144 ~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~L 223 (268)
T PF08324_consen 144 RQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLL 223 (268)
T ss_dssp HHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHH
T ss_pred HHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHH
Confidence 877776 33 344455444443 556777778888999862 12111112233456666644 3323578888999
Q ss_pred HHHHHHcCChhhHHHHHhcCCcHHHHHH
Q 044293 198 AVLNLLARFDEGMIALTKTDQIVSLMVD 225 (236)
Q Consensus 198 ~~L~~l~~~~~~~~~i~~~g~~i~~lv~ 225 (236)
-+|.++...+....+....=+ +...+.
T Consensus 224 vAlGtL~~~~~~~~~~~~~l~-~~~~~~ 250 (268)
T PF08324_consen 224 VALGTLLSSSDSAKQLAKSLD-VKSVLS 250 (268)
T ss_dssp HHHHHHHCCSHHHHHHCCCCT-HHHHHH
T ss_pred HHHHHHhccChhHHHHHHHcC-hHHHHH
Confidence 999999987766666665433 344433
No 168
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=94.36 E-value=1.8 Score=39.28 Aligned_cols=142 Identities=16% Similarity=0.174 Sum_probs=77.5
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhH
Q 044293 7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQ 86 (236)
Q Consensus 7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~ 86 (236)
.+.|..++++..+++..+|..|.+.|-.+|.+++++ +. .++..|+++|.++++.-...+-.+|..+-..+
T Consensus 58 ~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~---v~---kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d---- 127 (556)
T PF05918_consen 58 EEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEH---VS---KVADVLVQLLQTDDPVELDAVKNSLMSLLKQD---- 127 (556)
T ss_dssp HHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T----HH---HHHHHHHHHTT---HHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHH---Hh---HHHHHHHHHHhcccHHHHHHHHHHHHHHHhcC----
Confidence 567888999999999999999999999999875544 33 35778999999887655444445554432211
Q ss_pred HhhhcccHHHHHHHHh---ccCCHHHHHHHHHHHH-Hhcccc-h-hh--hhhcccCcHHHHHHhhcCCCcHHHHHHHHHH
Q 044293 87 SLASMETIYRLNWIIQ---SSSSQETVKLASSLIC-SLAMLD-K-NK--ARFGVAGTVQVLVKAVSAPSNPAGHHLLSSL 158 (236)
Q Consensus 87 ~i~~~g~i~~L~~lL~---~~~~~~~~~~a~~~L~-~Ls~~~-~-~~--~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL 158 (236)
-.+.+..+.+.+. ++ ++.+++.+...|. .+-... + .. ..+ +.-++..+-++|.+-....-......|
T Consensus 128 ---~k~tL~~lf~~i~~~~~~-de~~Re~~lkFl~~kl~~l~~~~~~p~~E~-e~~i~~~ikkvL~DVTaeEF~l~m~lL 202 (556)
T PF05918_consen 128 ---PKGTLTGLFSQIESSKSG-DEQVRERALKFLREKLKPLKPELLTPQKEM-EEFIVDEIKKVLQDVTAEEFELFMSLL 202 (556)
T ss_dssp ---HHHHHHHHHHHHH---HS--HHHHHHHHHHHHHHGGGS-TTTS---HHH-HHHHHHHHHHHCTT--HHHHHHHHHHH
T ss_pred ---cHHHHHHHHHHHHhcccC-chHHHHHHHHHHHHHHhhCcHHHhhchHHH-HHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 1344555555554 45 6788999888775 332211 1 11 111 123344444556544434444555555
Q ss_pred HHHhc
Q 044293 159 AELVQ 163 (236)
Q Consensus 159 ~~L~~ 163 (236)
..+-.
T Consensus 203 ~~lk~ 207 (556)
T PF05918_consen 203 KSLKI 207 (556)
T ss_dssp HTSGG
T ss_pred HhCcc
Confidence 55554
No 169
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=94.24 E-value=1.4 Score=42.01 Aligned_cols=178 Identities=15% Similarity=0.124 Sum_probs=108.9
Q ss_pred hHHHhHHHHHHHHhc--CCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCC
Q 044293 4 PRVRETINNCVSRSQ--SDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLN 81 (236)
Q Consensus 4 ~~~~~~i~~lv~~L~--~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~ 81 (236)
+++...+...++.|+ ..|.++++.|..++..+...=.++-.... +..++.+++-|.+ +..|..|..|+..++..
T Consensus 564 ~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL--~~~L~il~eRl~n--EiTRl~AvkAlt~Ia~S 639 (1233)
T KOG1824|consen 564 PYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNEL--PRTLPILLERLGN--EITRLTAVKALTLIAMS 639 (1233)
T ss_pred hhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhh--HHHHHHHHHHHhc--hhHHHHHHHHHHHHHhc
Confidence 344555666677775 45788888888887665433112222222 2466777776644 46677889999998887
Q ss_pred CchhHHh-hhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccch--hhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHH
Q 044293 82 PDLKQSL-ASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDK--NKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSL 158 (236)
Q Consensus 82 ~~~~~~i-~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~--~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL 158 (236)
+-.-... .-..+++.+.+.+... ....+.....++-.|..... ...... .-.+..+-.++...+-.+.+.|+..|
T Consensus 640 ~l~i~l~~~l~~il~~l~~flrK~-~r~lr~~~l~a~~~L~~~~~~~~~~~~~-e~vL~el~~Lisesdlhvt~~a~~~L 717 (1233)
T KOG1824|consen 640 PLDIDLSPVLTEILPELASFLRKN-QRALRLATLTALDKLVKNYSDSIPAELL-EAVLVELPPLISESDLHVTQLAVAFL 717 (1233)
T ss_pred cceeehhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhccccHHHH-HHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 7442221 1245778888888765 44555555555555544321 111111 12233333444444445778888888
Q ss_pred HHHhcCCCChHHHHHhCcHHHHHHHhcCC
Q 044293 159 AELVQFHGNSTLAVRAGAVSELIHLIGST 187 (236)
Q Consensus 159 ~~L~~~~~~~~~~~~~g~i~~lv~ll~~~ 187 (236)
..+...+......+..-.++.++.+++++
T Consensus 718 ~tl~~~~ps~l~~~~~~iL~~ii~ll~Sp 746 (1233)
T KOG1824|consen 718 TTLAIIQPSSLLKISNPILDEIIRLLRSP 746 (1233)
T ss_pred HHHHhcccHHHHHHhhhhHHHHHHHhhCc
Confidence 88888888777777778889999999875
No 170
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.17 E-value=2.6 Score=39.14 Aligned_cols=106 Identities=12% Similarity=0.082 Sum_probs=69.3
Q ss_pred hHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhcc-CCChHHHHHHHHHHHhhCCCC
Q 044293 4 PRVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSK-SSSPIIRTLSLSILLNLSLNP 82 (236)
Q Consensus 4 ~~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~ 82 (236)
+-+...+..|=++|.+.+...|--|++.+..++.. ......+..+ .+.++..|+ ..|..++..|+..|+.+|-.+
T Consensus 325 ~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss-~~s~davK~h---~d~Ii~sLkterDvSirrravDLLY~mcD~~ 400 (938)
T KOG1077|consen 325 ELLSRAVNQLGQFLSHRETNIRYLALESMCKLASS-EFSIDAVKKH---QDTIINSLKTERDVSIRRRAVDLLYAMCDVS 400 (938)
T ss_pred HHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhc-cchHHHHHHH---HHHHHHHhccccchHHHHHHHHHHHHHhchh
Confidence 34455666666777666666776677777777765 3344555443 777888888 568889999999999998766
Q ss_pred chhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHh
Q 044293 83 DLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSL 120 (236)
Q Consensus 83 ~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~L 120 (236)
+.+..+. -+++.|.+- +..+++..+.=..-|
T Consensus 401 Nak~IV~------elLqYL~tA-d~sireeivlKvAIL 431 (938)
T KOG1077|consen 401 NAKQIVA------ELLQYLETA-DYSIREEIVLKVAIL 431 (938)
T ss_pred hHHHHHH------HHHHHHhhc-chHHHHHHHHHHHHH
Confidence 5554442 355666555 666666544333333
No 171
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.14 E-value=2.5 Score=41.32 Aligned_cols=141 Identities=19% Similarity=0.164 Sum_probs=100.6
Q ss_pred hHHHHHHHHhc----CCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhcc-CCChHHHHHHHHHHHhhCCCC
Q 044293 8 ETINNCVSRSQ----SDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSK-SSSPIIRTLSLSILLNLSLNP 82 (236)
Q Consensus 8 ~~i~~lv~~L~----~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~ 82 (236)
...|.+++..+ .++|+.|..|.-+|..++--+.. |.+ .-.|.|+..+. +++|.+|.++..+++-++..=
T Consensus 919 ~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~----fce--s~l~llftimeksp~p~IRsN~VvalgDlav~f 992 (1251)
T KOG0414|consen 919 RFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAE----FCE--SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRF 992 (1251)
T ss_pred HHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHH----HHH--HHHHHHHHHHhcCCCceeeecchheccchhhhc
Confidence 34566666664 45799999999999998865332 333 35899999987 789999999988888776532
Q ss_pred chhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHh
Q 044293 83 DLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELV 162 (236)
Q Consensus 83 ~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~ 162 (236)
+| ++ ...-+.|...|... ++.+++.|..+|.+|-..+. |--.|-++.+...|-+++..+..-|-.....|+
T Consensus 993 pn---li-e~~T~~Ly~rL~D~-~~~vRkta~lvlshLILndm----iKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen 993 PN---LI-EPWTEHLYRRLRDE-SPSVRKTALLVLSHLILNDM----IKVKGQLSEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred cc---cc-chhhHHHHHHhcCc-cHHHHHHHHHHHHHHHHhhh----hHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence 22 11 11334455566666 89999999999999988664 333688999999999998777666665555554
Q ss_pred c
Q 044293 163 Q 163 (236)
Q Consensus 163 ~ 163 (236)
.
T Consensus 1064 ~ 1064 (1251)
T KOG0414|consen 1064 S 1064 (1251)
T ss_pred h
Confidence 3
No 172
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=94.09 E-value=0.52 Score=34.96 Aligned_cols=75 Identities=12% Similarity=0.166 Sum_probs=62.8
Q ss_pred hHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-ChHHHHHHHhccCcHHHHHhhccC-CChHHHHHHHHHHHhhC
Q 044293 4 PRVRETINNCVSRSQSDSYEDQQKALQTLASITRV-SPQYRSLLAQTDGAISTLLGLSKS-SSPIIRTLSLSILLNLS 79 (236)
Q Consensus 4 ~~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~ 79 (236)
...++.+..+.+.|++.++.++..|+..|-.+..+ +......+... ..+..|+.+++. .++.++..++..+...+
T Consensus 33 ~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask-~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~ 109 (144)
T cd03568 33 NGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASR-DFTQELKKLINDRVHPTVKEKLREVVKQWA 109 (144)
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhH-HHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 34577899999999999999999999999988887 34567778876 999999999987 67889999888887654
No 173
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=93.96 E-value=0.6 Score=34.40 Aligned_cols=73 Identities=15% Similarity=0.207 Sum_probs=59.8
Q ss_pred HHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-ChHHHHHHHhccCcHHHHHhhccC------CChHHHHHHHHHHHh
Q 044293 5 RVRETINNCVSRSQSDSYEDQQKALQTLASITRV-SPQYRSLLAQTDGAISTLLGLSKS------SSPIIRTLSLSILLN 77 (236)
Q Consensus 5 ~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~~g~i~~Lv~lL~~------~~~~~~~~a~~~L~~ 77 (236)
..++.+..+.+.|++.++.++..|+..|-.+..+ +..+...|... +++..|+.+++. .++.++...+..+..
T Consensus 35 ~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~-~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~ 113 (139)
T cd03567 35 GPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKF-RFLNELIKLVSPKYLGSRTSEKVKTKIIELLYS 113 (139)
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhH-HHHHHHHHHhccccCCCCCCHHHHHHHHHHHHH
Confidence 3467889999999999999999999999888876 45677888876 999999999963 457888888887765
Q ss_pred h
Q 044293 78 L 78 (236)
Q Consensus 78 l 78 (236)
-
T Consensus 114 W 114 (139)
T cd03567 114 W 114 (139)
T ss_pred H
Confidence 3
No 174
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.95 E-value=5.3 Score=37.18 Aligned_cols=116 Identities=19% Similarity=0.168 Sum_probs=83.0
Q ss_pred HHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchh
Q 044293 6 VRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLK 85 (236)
Q Consensus 6 ~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~ 85 (236)
+.+++..++....+++..+|...+..|..+...+.+.-+-+.. +..+.+..-+....|.+|..|+-+|.-+-.++.+-
T Consensus 83 V~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn--~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de 160 (892)
T KOG2025|consen 83 VAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFN--KLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE 160 (892)
T ss_pred HHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHH--HHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC
Confidence 3556666666667888889999999999998865555555553 78888888888888999999999999887544331
Q ss_pred HHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhh
Q 044293 86 QSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARF 130 (236)
Q Consensus 86 ~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i 130 (236)
+......+..+++.+.+++++..|.. +++-++....-|
T Consensus 161 ----e~~v~n~l~~liqnDpS~EVRRaaLs---nI~vdnsTlp~I 198 (892)
T KOG2025|consen 161 ----ECPVVNLLKDLIQNDPSDEVRRAALS---NISVDNSTLPCI 198 (892)
T ss_pred ----cccHHHHHHHHHhcCCcHHHHHHHHH---hhccCcccchhH
Confidence 23456788889987767899987654 445444433333
No 175
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=93.94 E-value=1.4 Score=43.04 Aligned_cols=199 Identities=16% Similarity=0.134 Sum_probs=110.8
Q ss_pred HHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC----ChHHHHHHHhccCcHHHHHhhccCCChH-HHHHHHHHHHhhC-
Q 044293 6 VRETINNCVSRSQSDSYEDQQKALQTLASITRV----SPQYRSLLAQTDGAISTLLGLSKSSSPI-IRTLSLSILLNLS- 79 (236)
Q Consensus 6 ~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~----~~~~~~~i~~~~g~i~~Lv~lL~~~~~~-~~~~a~~~L~~l~- 79 (236)
+...+|.+|-++.++.+++|..|+.+|..+... .+.+...|.+- .+|.|-.++...++. +|-.-+..|..||
T Consensus 460 LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eY--lfP~L~~l~~d~~~~~vRiayAsnla~LA~ 537 (1431)
T KOG1240|consen 460 LDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEY--LFPHLNHLLNDSSAQIVRIAYASNLAQLAK 537 (1431)
T ss_pred HhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhh--hhhhhHhhhccCccceehhhHHhhHHHHHH
Confidence 466889999999999999999999998776533 23344455543 677777777663322 2211111222111
Q ss_pred ------------------CCCch--hHHhhhc-------ccHHHHH-HHHhccCCHHHHHHHHHHHHHhcccchhhhhhc
Q 044293 80 ------------------LNPDL--KQSLASM-------ETIYRLN-WIIQSSSSQETVKLASSLICSLAMLDKNKARFG 131 (236)
Q Consensus 80 ------------------~~~~~--~~~i~~~-------g~i~~L~-~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~ 131 (236)
.++++ ...--.. ..++..+ .+|... ++-++....-.|.-||..-. |+.-
T Consensus 538 tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~-~~~Vkr~Lle~i~~LC~FFG-k~ks- 614 (1431)
T KOG1240|consen 538 TAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDS-PPIVKRALLESIIPLCVFFG-KEKS- 614 (1431)
T ss_pred HHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHhh-hccc-
Confidence 12222 1110001 1222222 233333 44555555555666654331 1110
Q ss_pred ccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChhhHH
Q 044293 132 VAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGMI 211 (236)
Q Consensus 132 ~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~ 211 (236)
.-=.++.|+.+|++.+...+..-...+..+|..-..+. ++.+.+|.|.+-|.+++ +.+...|+.+|..|+...-.|+
T Consensus 615 ND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs--~seyllPLl~Q~ltD~E-E~Viv~aL~~ls~Lik~~ll~K 691 (1431)
T KOG1240|consen 615 NDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRS--VSEYLLPLLQQGLTDGE-EAVIVSALGSLSILIKLGLLRK 691 (1431)
T ss_pred ccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeee--HHHHHHHHHHHhccCcc-hhhHHHHHHHHHHHHHhcccch
Confidence 12346778888887765655555555655555333221 24567788888888874 6677888888888886654443
Q ss_pred H
Q 044293 212 A 212 (236)
Q Consensus 212 ~ 212 (236)
.
T Consensus 692 ~ 692 (1431)
T KOG1240|consen 692 P 692 (1431)
T ss_pred H
Confidence 3
No 176
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=93.81 E-value=0.12 Score=45.42 Aligned_cols=161 Identities=11% Similarity=0.077 Sum_probs=88.0
Q ss_pred HHHHHHHHHhhCCCCchhHHhh-hcccHHHHHHHHhccCCHHHHHHHHHHHHHhccc-----chhhhhhcccCcHHH-HH
Q 044293 68 RTLSLSILLNLSLNPDLKQSLA-SMETIYRLNWIIQSSSSQETVKLASSLICSLAML-----DKNKARFGVAGTVQV-LV 140 (236)
Q Consensus 68 ~~~a~~~L~~l~~~~~~~~~i~-~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~-----~~~~~~i~~~g~i~~-Lv 140 (236)
+..|.+++.....|+.-+.... -.+.-..+...+.+. ....++.++|++.|++.- +..+..-. -++.. |.
T Consensus 408 ~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~-~ln~r~KaawtlgnITdAL~~~~Ps~~s~~e--R~sg~ll~ 484 (728)
T KOG4535|consen 408 KAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDK-SLNVRAKAAWSLGNITDALIVNMPTPDSFQE--RFSGLLLL 484 (728)
T ss_pred HHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhH-hHhHHHHHHHHhhhhHHHHHcCCCCchHHHH--HHHHHHHH
Confidence 4455566666667776654433 333444445555444 567888999999998752 12111111 11222 22
Q ss_pred HhhcC------CCcHHHHHHHHHHHHHhcCCCC----hHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChhhH
Q 044293 141 KAVSA------PSNPAGHHLLSSLAELVQFHGN----STLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGM 210 (236)
Q Consensus 141 ~lL~~------~~~~~~~~a~~aL~~L~~~~~~----~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~ 210 (236)
++++. .++.++.++.++|.|+..--+- --.....|.+..++.-.-....-.++++++.++.||..++.-.
T Consensus 485 ~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~ 564 (728)
T KOG4535|consen 485 KMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALP 564 (728)
T ss_pred HHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCcccc
Confidence 33322 3567889999999998763211 0011122333333222222223568999999999999988652
Q ss_pred -HHHHhcCCcHHHHHHHhhCCc
Q 044293 211 -IALTKTDQIVSLMVDVLKGRS 231 (236)
Q Consensus 211 -~~i~~~g~~i~~lv~~l~~~~ 231 (236)
..+.=.+-+.+.|..++...+
T Consensus 565 lq~~~wA~~~F~~L~~Lv~~~~ 586 (728)
T KOG4535|consen 565 LQTAPWASQAFNALTSLVTSCK 586 (728)
T ss_pred ccCCCchHHHHHHHHHHHHHhc
Confidence 222222334677777776544
No 177
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=93.80 E-value=0.62 Score=34.45 Aligned_cols=74 Identities=18% Similarity=0.161 Sum_probs=61.8
Q ss_pred HHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-ChHHHHHHHhccCcHHHHHhhcc-CCChHHHHHHHHHHHhhC
Q 044293 5 RVRETINNCVSRSQSDSYEDQQKALQTLASITRV-SPQYRSLLAQTDGAISTLLGLSK-SSSPIIRTLSLSILLNLS 79 (236)
Q Consensus 5 ~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~l~ 79 (236)
...+.+..+.+.|+++++.++..|+..|-.+..+ +......+... +.+..|+.+++ ..++.++..++..+..-+
T Consensus 38 ~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~-~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 113 (142)
T cd03569 38 QPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASR-EFMDELKDLIKTTKNEEVRQKILELIQAWA 113 (142)
T ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhH-HHHHHHHHHHcccCCHHHHHHHHHHHHHHH
Confidence 3467899999999999999999999999988887 45677788876 99999999987 456788888888887644
No 178
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=93.77 E-value=0.22 Score=33.90 Aligned_cols=71 Identities=13% Similarity=0.094 Sum_probs=56.3
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCC
Q 044293 8 ETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLN 81 (236)
Q Consensus 8 ~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~ 81 (236)
+.....+..+.++.+.+|..|+..|+.+..... ..+...++++..+...|+++++-+--+|...|..|+..
T Consensus 3 ~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~---~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~ 73 (92)
T PF10363_consen 3 ETLQEALSDLNDPLPPVRAHGLVLLRKLIESKS---EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADR 73 (92)
T ss_pred HHHHHHHHHccCCCcchHHHHHHHHHHHHHcCC---cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHH
Confidence 456778888999999999999999999998754 12222236788888889999998888899998887764
No 179
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.76 E-value=0.42 Score=43.67 Aligned_cols=101 Identities=18% Similarity=0.228 Sum_probs=76.6
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhhhcc
Q 044293 13 CVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASME 92 (236)
Q Consensus 13 lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g 92 (236)
+|.=|.++-.++|..|+..+..|+.+.+.+ .. ..+..|+++++.+...+|..|+.+|..++.+ ..++..
T Consensus 378 ~VhGlEDEf~EVR~AAV~Sl~~La~ssP~F----A~--~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~-----l~i~ee 446 (823)
T KOG2259|consen 378 LVHGLEDEFYEVRRAAVASLCSLATSSPGF----AV--RALDFLVDMFNDEIEVVRLKAIFALTMISVH-----LAIREE 446 (823)
T ss_pred eeeechHHHHHHHHHHHHHHHHHHcCCCCc----HH--HHHHHHHHHhccHHHHHHHHHHHHHHHHHHH-----heecHH
Confidence 344444445679999999999999876654 33 4699999999988889999999999998887 233556
Q ss_pred cHHHHHHHHhccCCHHHHHHHHHHHHHhcccch
Q 044293 93 TIYRLNWIIQSSSSQETVKLASSLICSLAMLDK 125 (236)
Q Consensus 93 ~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~ 125 (236)
-++.+...|... ++++++..-..|.+.-..+-
T Consensus 447 ql~~il~~L~D~-s~dvRe~l~elL~~~~~~d~ 478 (823)
T KOG2259|consen 447 QLRQILESLEDR-SVDVREALRELLKNARVSDL 478 (823)
T ss_pred HHHHHHHHHHhc-CHHHHHHHHHHHHhcCCCcH
Confidence 778888888877 78888877777766555443
No 180
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=93.75 E-value=0.26 Score=39.55 Aligned_cols=122 Identities=15% Similarity=0.152 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHhcccch---hhhhhcc---cCcHHHHHHhhcCC-C----------cHHHHHHHHHHHHHhcCCCChH
Q 044293 107 QETVKLASSLICSLAMLDK---NKARFGV---AGTVQVLVKAVSAP-S----------NPAGHHLLSSLAELVQFHGNST 169 (236)
Q Consensus 107 ~~~~~~a~~~L~~Ls~~~~---~~~~i~~---~g~i~~Lv~lL~~~-~----------~~~~~~a~~aL~~L~~~~~~~~ 169 (236)
..++++|..+|.|++..=+ .-+.|.. .|.+...|---... + -.-++.|+.+|..||..+.|..
T Consensus 80 ~~lREnalV~laNisgqLdLs~~~e~I~~PildGLLHWaVcpsa~A~Dpfp~~~~~~~lSPqrlaLEaLcKLsV~e~NVD 159 (257)
T PF12031_consen 80 EQLRENALVTLANISGQLDLSDYPESIARPILDGLLHWAVCPSAEAQDPFPTAGPHSPLSPQRLALEALCKLSVIENNVD 159 (257)
T ss_pred HHHhhcceEeeeeeeeeeecccCchHHHHHHHHHHHHHHhccchhccCCCCCCCCCCCCCHHHHHHHHHHHhheeccCcc
Confidence 4788999999999886432 1122211 23333333221110 1 1246899999999999999988
Q ss_pred HHHHhC-------cHHHHHHHhcCCChhhHHHHHHHHHHHHcCChh--hHHHHHhcCCcHHHHHHHhhC
Q 044293 170 LAVRAG-------AVSELIHLIGSTEAEDLAGTSLAVLNLLARFDE--GMIALTKTDQIVSLMVDVLKG 229 (236)
Q Consensus 170 ~~~~~g-------~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~--~~~~i~~~g~~i~~lv~~l~~ 229 (236)
.+...+ .+..|+.++....++..+|.|+.+|.+|+..++ +|..-.+.+ .|..|+.++..
T Consensus 160 liLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~-~i~~Li~FiE~ 227 (257)
T PF12031_consen 160 LILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKP-CISHLIAFIED 227 (257)
T ss_pred eeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhc-hHHHHHHHHHH
Confidence 776544 445577777666567789999999999997653 344444554 58999988864
No 181
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=93.74 E-value=1.4 Score=36.08 Aligned_cols=158 Identities=23% Similarity=0.215 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhccCc-HHHHHhhccC----CChHHHHHHHHHHHhhCCCCchhHHhhhc-c-cHHHH
Q 044293 25 QQKALQTLASITRVSPQYRSLLAQTDGA-ISTLLGLSKS----SSPIIRTLSLSILLNLSLNPDLKQSLASM-E-TIYRL 97 (236)
Q Consensus 25 ~~~a~~~L~~l~~~~~~~~~~i~~~~g~-i~~Lv~lL~~----~~~~~~~~a~~~L~~l~~~~~~~~~i~~~-g-~i~~L 97 (236)
+.=++..+|.++.+ +.....+...+++ ...+..++.. ..+..+--++++++|+-.++.++..+.+. + .+-..
T Consensus 80 ~fP~lDLlRl~~l~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~ 158 (268)
T PF08324_consen 80 RFPALDLLRLAALH-PPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILEL 158 (268)
T ss_dssp -HHHHHHHHHHCCC-HCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHH
T ss_pred chhHHhHHHHHHhC-ccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHH
Confidence 44456666666654 4444455444222 3444444332 34566778999999999999998888754 3 23333
Q ss_pred HHHHhccC---CHHHHHHHHHHHHHhcccchhhhhhc--ccCcHHHHHHhhcC--CCcHHHHHHHHHHHHHhcCCCChHH
Q 044293 98 NWIIQSSS---SQETVKLASSLICSLAMLDKNKARFG--VAGTVQVLVKAVSA--PSNPAGHHLLSSLAELVQFHGNSTL 170 (236)
Q Consensus 98 ~~lL~~~~---~~~~~~~a~~~L~~Ls~~~~~~~~i~--~~g~i~~Lv~lL~~--~~~~~~~~a~~aL~~L~~~~~~~~~ 170 (236)
+..+..+. +..++..+++++.|++..-.....-. ....+..++..+.. .++++...++.||++|...+.....
T Consensus 159 ~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~ 238 (268)
T PF08324_consen 159 LSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQ 238 (268)
T ss_dssp CHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHH
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHH
Confidence 33333221 46788888899999987543222111 13356666674433 4778889999999999976666555
Q ss_pred HHH-hCcHHHHHHH
Q 044293 171 AVR-AGAVSELIHL 183 (236)
Q Consensus 171 ~~~-~g~i~~lv~l 183 (236)
..+ .|+-..+-..
T Consensus 239 ~~~~l~~~~~~~~~ 252 (268)
T PF08324_consen 239 LAKSLDVKSVLSKK 252 (268)
T ss_dssp HCCCCTHHHHHHHH
T ss_pred HHHHcChHHHHHHH
Confidence 544 3444443333
No 182
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=93.70 E-value=1.8 Score=39.90 Aligned_cols=199 Identities=14% Similarity=0.108 Sum_probs=108.6
Q ss_pred CCchHH--HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHH-------HHHHHhccCcHHHHHhhccC-CChHHHHH
Q 044293 1 MSAPRV--RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQY-------RSLLAQTDGAISTLLGLSKS-SSPIIRTL 70 (236)
Q Consensus 1 ~~~~~~--~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~-------~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~ 70 (236)
||+||. .+.+..+|++++.++++.+..|+..++...+.+... -+++.- -...|..+-.+ .++...+.
T Consensus 39 lSEED~~lk~dLellVervqdpd~~Lq~~aLe~lr~~irsStSSmtsvpkPlKFLrp---hy~~Lk~i~~~~~~~n~Kk~ 115 (878)
T KOG2005|consen 39 LSEEDLQLKGDLELLVERVQDPDPDLQKAALESLREEIRSSTSSMTSVPKPLKFLRP---HYGVLKEIYESMADSNLKKW 115 (878)
T ss_pred ccHHHHHhhhhHHHHHHHhcCCChHHHHHHHHHHHHHHHhcccccccCCchhhhhcc---chhHHHHHHHhccCchhHhH
Confidence 567776 678999999999999999999999998876653211 111111 12223332221 24566778
Q ss_pred HHHHHHhhCCCCchhHHhhhc---c-----------cHHHHHHHHh----c--cC---CHHHHHHHHHHHHH-hcccc--
Q 044293 71 SLSILLNLSLNPDLKQSLASM---E-----------TIYRLNWIIQ----S--SS---SQETVKLASSLICS-LAMLD-- 124 (236)
Q Consensus 71 a~~~L~~l~~~~~~~~~i~~~---g-----------~i~~L~~lL~----~--~~---~~~~~~~a~~~L~~-Ls~~~-- 124 (236)
.+.+|..+|....++...... | -+..|..-+. . .+ -.++...+-.++-+ +..+.
T Consensus 116 laDIlSvLamt~se~~~~l~YRl~G~~~d~~~WGHeYVRhLageIaee~~~~~~e~~~~~dl~~l~~~iV~f~mkHNAE~ 195 (878)
T KOG2005|consen 116 LADILSVLAMTMSERGEHLAYRLLGSIIDLGSWGHEYVRHLAGEIAEEYNNREMEAPSKADLLDLVQEIVPFHMKHNAEF 195 (878)
T ss_pred HHHHHHHHheeecccchheeeeeccccCChhhhHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHhccchh
Confidence 888888888876554332111 1 1222222111 1 00 12333334444432 33332
Q ss_pred hhhhhhcccCcHHHHHHhhcCCCcHH--------------------HHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHh
Q 044293 125 KNKARFGVAGTVQVLVKAVSAPSNPA--------------------GHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLI 184 (236)
Q Consensus 125 ~~~~~i~~~g~i~~Lv~lL~~~~~~~--------------------~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll 184 (236)
+....+.+-|.|..|++.....+..- .+.|...-.....+++.-.-.+..+-.+...+.+
T Consensus 196 eAiDlL~Eve~id~l~~~Vd~~n~~RvclYl~sc~~~lP~Pdd~~ll~~a~~IYlKf~~~~~al~~ai~l~~~~~v~~vf 275 (878)
T KOG2005|consen 196 EAIDLLMEVEGIDLLLDYVDEHNYQRVCLYLTSCVPLLPGPDDVALLRTALKIYLKFNEYPRALVGAIRLDDMKEVKEVF 275 (878)
T ss_pred HHHHHHHHhhhHhHHHHHhhhhhHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHhHHHHHHHHhcCcHHHHHHHH
Confidence 34556667888898888887654321 1222222222222333333344455566666667
Q ss_pred cCCChhhHHHHHHHHHHH
Q 044293 185 GSTEAEDLAGTSLAVLNL 202 (236)
Q Consensus 185 ~~~~~~~~~~~a~~~L~~ 202 (236)
.+.+++..+++++.+|..
T Consensus 276 ~s~~D~~~kKQ~~ymLaR 293 (878)
T KOG2005|consen 276 TSCTDPLLKKQMAYMLAR 293 (878)
T ss_pred HhccCHHHHHHHHHHHHh
Confidence 665557788888888764
No 183
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=93.54 E-value=0.72 Score=33.15 Aligned_cols=76 Identities=11% Similarity=0.179 Sum_probs=54.2
Q ss_pred chHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-ChHHHHHHHhccCcHHHHHhhccCCC--------hHHHHHHHH
Q 044293 3 APRVRETINNCVSRSQSDSYEDQQKALQTLASITRV-SPQYRSLLAQTDGAISTLLGLSKSSS--------PIIRTLSLS 73 (236)
Q Consensus 3 ~~~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~~g~i~~Lv~lL~~~~--------~~~~~~a~~ 73 (236)
..+..+....|.+.|++.++-++.+++..|..++.. ++..+..+.+....|..+..+=...+ ..+|..|-.
T Consensus 33 ~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~E 112 (122)
T cd03572 33 VGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQE 112 (122)
T ss_pred HHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHH
Confidence 455678889999999988899999999999998876 45677777766466666666543233 245666555
Q ss_pred HHHhh
Q 044293 74 ILLNL 78 (236)
Q Consensus 74 ~L~~l 78 (236)
++..+
T Consensus 113 l~~~i 117 (122)
T cd03572 113 LIKAI 117 (122)
T ss_pred HHHHH
Confidence 55544
No 184
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=93.51 E-value=0.56 Score=44.39 Aligned_cols=152 Identities=14% Similarity=0.085 Sum_probs=104.4
Q ss_pred hHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCC-C
Q 044293 4 PRVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLN-P 82 (236)
Q Consensus 4 ~~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-~ 82 (236)
+.+-+.+|.+++...+....++..-+.+|.+.-.+-|. ...+-+.+...|.|++-|+-+|..+|..++.++.-+-.. +
T Consensus 863 RfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~-~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~ 941 (1030)
T KOG1967|consen 863 RFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPK-QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESE 941 (1030)
T ss_pred HHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCH-HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcc
Confidence 44567899999999855555666677778777765443 222222256788888888889999988888877643322 2
Q ss_pred chhHHhhhcccHHHHHHHHhccCC--HHHHHHHHHHHHHhcc-cchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHH
Q 044293 83 DLKQSLASMETIYRLNWIIQSSSS--QETVKLASSLICSLAM-LDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSS 157 (236)
Q Consensus 83 ~~~~~i~~~g~i~~L~~lL~~~~~--~~~~~~a~~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~a 157 (236)
.-...- -.-.+|.+..+=.+.++ ..+++.|.-+|..|.. .+.+.-.-.+...+..|++.|.++..-+++.|.++
T Consensus 942 tL~t~~-~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 942 TLQTEH-LSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred ccchHH-HhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 221111 13466666665444422 6788899999999988 66655555668899999999998877788888866
No 185
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.51 E-value=1 Score=42.46 Aligned_cols=70 Identities=13% Similarity=0.153 Sum_probs=52.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCC
Q 044293 9 TINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSL 80 (236)
Q Consensus 9 ~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~ 80 (236)
.....+..+.++...++.+|+..|+.+..+. .....+.+. +++....+.|.+.|+-+--+|...+..||.
T Consensus 728 ~~qeai~sl~d~qvpik~~gL~~l~~l~e~r-~~~~~~~~e-kvl~i~ld~LkdedsyvyLnaI~gv~~Lce 797 (982)
T KOG4653|consen 728 PLQEAISSLHDDQVPIKGYGLQMLRHLIEKR-KKATLIQGE-KVLAIALDTLKDEDSYVYLNAIRGVVSLCE 797 (982)
T ss_pred HHHHHHHHhcCCcccchHHHHHHHHHHHHhc-chhhhhhHH-HHHHHHHHHhcccCceeeHHHHHHHHHHHH
Confidence 3455667777788889999999999999864 334445555 899999999999998777777775555443
No 186
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=93.41 E-value=0.84 Score=41.59 Aligned_cols=182 Identities=11% Similarity=0.092 Sum_probs=102.6
Q ss_pred HHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChH---HHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCC
Q 044293 5 RVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQ---YRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLN 81 (236)
Q Consensus 5 ~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~---~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~ 81 (236)
-+++.+|.|...|++..+.++......+...+...++ .|+++.-. =.|+++|.+.+.+++++|...+..++.
T Consensus 685 Pi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIc----feLvd~Lks~nKeiRR~A~~tfG~Is~- 759 (975)
T COG5181 685 PISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRIC----FELVDSLKSWNKEIRRNATETFGCISR- 759 (975)
T ss_pred chhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHH----HHHHHHHHHhhHHHHHhhhhhhhhHHh-
Confidence 3578899999999988888999998888888877554 46666532 346788888899999999988877654
Q ss_pred CchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHH
Q 044293 82 PDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAEL 161 (236)
Q Consensus 82 ~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L 161 (236)
.|.-.+.+..|+.-|+.. +...+...+.++.-. .+.+.. -..+|.|+.--..++..++...+++++.+
T Consensus 760 -----aiGPqdvL~~LlnnLkvq-eRq~RvctsvaI~iV---ae~cgp---fsVlP~lm~dY~TPe~nVQnGvLkam~fm 827 (975)
T COG5181 760 -----AIGPQDVLDILLNNLKVQ-ERQQRVCTSVAISIV---AEYCGP---FSVLPTLMSDYETPEANVQNGVLKAMCFM 827 (975)
T ss_pred -----hcCHHHHHHHHHhcchHH-HHHhhhhhhhhhhhh---HhhcCc---hhhHHHHHhcccCchhHHHHhHHHHHHHH
Confidence 222223333444444332 222222222222211 111211 23455554444445555666666665544
Q ss_pred hcC--CCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCC
Q 044293 162 VQF--HGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARF 206 (236)
Q Consensus 162 ~~~--~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~ 206 (236)
=.. +..++.+ .-..|.+-+.|.+.| +..+..|+.++..|+-+
T Consensus 828 Feyig~~s~dYv--y~itPlleDAltDrD-~vhRqta~nvI~Hl~Ln 871 (975)
T COG5181 828 FEYIGQASLDYV--YSITPLLEDALTDRD-PVHRQTAMNVIRHLVLN 871 (975)
T ss_pred HHHHHHHHHHHH--HHhhHHHHhhhcccc-hHHHHHHHHHHHHHhcC
Confidence 332 1222222 233455555555553 45556666677666644
No 187
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.20 E-value=3.4 Score=40.34 Aligned_cols=205 Identities=16% Similarity=0.185 Sum_probs=105.9
Q ss_pred cCCCHHHHHHHHHHHHHHhcCChHHHHHHHhc-cCcHHHHHhhccCCChHHHHHHHHHHHhhCC-CC-chhHHhhhcccH
Q 044293 18 QSDSYEDQQKALQTLASITRVSPQYRSLLAQT-DGAISTLLGLSKSSSPIIRTLSLSILLNLSL-NP-DLKQSLASMETI 94 (236)
Q Consensus 18 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~~-~~~~~i~~~g~i 94 (236)
++.+..+|.++.+.|..++.. +.......+. ..+...|.+-+++.....+...+.+|..+-. ++ ++...+. . .|
T Consensus 664 ~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~-k-~I 740 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP-K-LI 740 (1176)
T ss_pred ccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH-H-HH
Confidence 355788999999999999876 2222222211 1233444444444455556666666654422 22 3333332 2 33
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhc---ccCcHHHHHHhhcCC--CcHHHHHHH--HHHHHHhcCCCC
Q 044293 95 YRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFG---VAGTVQVLVKAVSAP--SNPAGHHLL--SSLAELVQFHGN 167 (236)
Q Consensus 95 ~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~---~~g~i~~Lv~lL~~~--~~~~~~~a~--~aL~~L~~~~~~ 167 (236)
+-++-.++.. +...+++|..+|..++... .....+ ....|...+.++..+ +......+. -+++.+.....+
T Consensus 741 ~EvIL~~Ke~-n~~aR~~Af~lL~~i~~i~-~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~ 818 (1176)
T KOG1248|consen 741 PEVILSLKEV-NVKARRNAFALLVFIGAIQ-SSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKN 818 (1176)
T ss_pred HHHHHhcccc-cHHHHhhHHHHHHHHHHHH-hhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhc
Confidence 3333344666 8899999999998887311 001111 123566666666554 333333222 233333221111
Q ss_pred -hHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC-ChhhHHHHHhcCCcHHHHHHHhhC
Q 044293 168 -STLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR-FDEGMIALTKTDQIVSLMVDVLKG 229 (236)
Q Consensus 168 -~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~~i~~lv~~l~~ 229 (236)
-..-.-.+.+..+...|.++ .+++...|++.+..++. .|+..-.-.... +++.+..+++.
T Consensus 819 ~ld~~~l~~li~~V~~~L~s~-sreI~kaAI~fikvlv~~~pe~~l~~~~~~-LL~sll~ls~d 880 (1176)
T KOG1248|consen 819 ILDDETLEKLISMVCLYLASN-SREIAKAAIGFIKVLVYKFPEECLSPHLEE-LLPSLLALSHD 880 (1176)
T ss_pred cccHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHcCCHHHHhhhHHH-HHHHHHHHHHh
Confidence 11111123444455555555 47888888888887764 455444433333 46666665554
No 188
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.19 E-value=2.3 Score=39.41 Aligned_cols=103 Identities=19% Similarity=0.114 Sum_probs=78.6
Q ss_pred CcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhh
Q 044293 51 GAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARF 130 (236)
Q Consensus 51 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i 130 (236)
|.+..++....+++..+|..++.+|.-+......++.-+-++....+..-+..- .+.++..|..+|..+-.++.+-
T Consensus 85 ~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Dr-ep~VRiqAv~aLsrlQ~d~~de--- 160 (892)
T KOG2025|consen 85 GTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDR-EPNVRIQAVLALSRLQGDPKDE--- 160 (892)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhcc-CchHHHHHHHHHHHHhcCCCCC---
Confidence 678888888888899999999999998877555566666677888888777766 6899999999999998654211
Q ss_pred cccCcHHHHHHhhcC-CCcHHHHHHHHHH
Q 044293 131 GVAGTVQVLVKAVSA-PSNPAGHHLLSSL 158 (236)
Q Consensus 131 ~~~g~i~~Lv~lL~~-~~~~~~~~a~~aL 158 (236)
+..++..+..+++. +++.+++.++..+
T Consensus 161 -e~~v~n~l~~liqnDpS~EVRRaaLsnI 188 (892)
T KOG2025|consen 161 -ECPVVNLLKDLIQNDPSDEVRRAALSNI 188 (892)
T ss_pred -cccHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 24667788888875 4677777666544
No 189
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=92.79 E-value=4.5 Score=36.83 Aligned_cols=139 Identities=12% Similarity=0.092 Sum_probs=85.4
Q ss_pred hHHHHHHHHHHHhhCCC-CchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhh
Q 044293 65 PIIRTLSLSILLNLSLN-PDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAV 143 (236)
Q Consensus 65 ~~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL 143 (236)
.+++.+-+.+|..+-.. +..... ++.-.+..++++|++.+..-+-.....++.+|+..-+.+-.-....++|.|.+-|
T Consensus 570 ~elqSN~~~vl~aiir~~~~~ie~-v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~al 648 (858)
T COG5215 570 EELQSNYIGVLEAIIRTRRRDIED-VEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRAL 648 (858)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccc-HHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHh
Confidence 35667777666654332 111111 1233778888999876323344456677777766444343333478999999999
Q ss_pred cCCCcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCC-hhhHHHHHHHHHHHHc
Q 044293 144 SAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTE-AEDLAGTSLAVLNLLA 204 (236)
Q Consensus 144 ~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~-~~~~~~~a~~~L~~l~ 204 (236)
+..+..+...++..++.|+..-+..-..........|++.|+++. +++++-..+.++..++
T Consensus 649 n~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIA 710 (858)
T COG5215 649 NCTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIA 710 (858)
T ss_pred cchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHH
Confidence 777778888888888888876544433334445667778776642 3455555555555544
No 190
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=92.78 E-value=1.3 Score=32.36 Aligned_cols=75 Identities=17% Similarity=0.203 Sum_probs=60.9
Q ss_pred HHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC-hHHHHHHHhccCcHHHHHhhccC---CChHHHHHHHHHHHhhCC
Q 044293 5 RVRETINNCVSRSQSDSYEDQQKALQTLASITRVS-PQYRSLLAQTDGAISTLLGLSKS---SSPIIRTLSLSILLNLSL 80 (236)
Q Consensus 5 ~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~~g~i~~Lv~lL~~---~~~~~~~~a~~~L~~l~~ 80 (236)
...+.+..|.+.|+++++.++..|+..|-.+..+. +.+...+... ..+..|+.++.. .++.++..++..+...+.
T Consensus 34 ~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~-~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 34 GPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADK-EFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhH-HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 34678899999999999999999999999988874 4477778775 788889999875 467889999888876543
No 191
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=92.71 E-value=2.5 Score=39.14 Aligned_cols=156 Identities=13% Similarity=0.087 Sum_probs=102.4
Q ss_pred HHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcc
Q 044293 43 RSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAM 122 (236)
Q Consensus 43 ~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~ 122 (236)
++.+.+ .++|.|..-++..+..+|+.++.++..++..=+ -..++.-.+|.+-.+.....+..++.+++.++..+..
T Consensus 383 ~e~~~~--~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q 458 (700)
T KOG2137|consen 383 PEEVKE--KILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ 458 (700)
T ss_pred hHHHHH--HHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHH
Confidence 444544 689999999999999999999999988776544 3444556777777765544478899999999998882
Q ss_pred cchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCC-hhhHHHHHHHHHH
Q 044293 123 LDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTE-AEDLAGTSLAVLN 201 (236)
Q Consensus 123 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~-~~~~~~~a~~~L~ 201 (236)
.-+ +..+ ..-++++.+-.+..++..+-..+++..++.....+...+....++|.++-+...+. .-+-....+..+.
T Consensus 459 ~lD-~~~v--~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~L~~~Qy~~~m~~i~ 535 (700)
T KOG2137|consen 459 RLD-KAAV--LDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPSLNGEQYNKYMSEIR 535 (700)
T ss_pred HHH-HHHh--HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhcccccHHHHHHHHHHHH
Confidence 211 2222 34456666666677777777777777777764433344455678888888876542 1122234455555
Q ss_pred HHcC
Q 044293 202 LLAR 205 (236)
Q Consensus 202 ~l~~ 205 (236)
.+..
T Consensus 536 ~ml~ 539 (700)
T KOG2137|consen 536 LMLS 539 (700)
T ss_pred HHHh
Confidence 5544
No 192
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=92.58 E-value=6 Score=36.16 Aligned_cols=133 Identities=18% Similarity=0.148 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHH-HhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHH
Q 044293 22 YEDQQKALQTLAS-ITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWI 100 (236)
Q Consensus 22 ~~~~~~a~~~L~~-l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~l 100 (236)
++....-+..... ...++|+. ..++. |.+..++..+.+++..+|..++.+|+-+...-...+...-+|.+..|..-
T Consensus 64 ~dRil~fl~~f~~Y~~~~dpeg-~~~V~--~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R 140 (885)
T COG5218 64 PDRILSFLKRFFEYDMPDDPEG-EELVA--GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSER 140 (885)
T ss_pred HHHHHHHHHHHHHhcCCCChhh-hHHHH--HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 4433333333333 33344554 44443 78888888899999999999999998877654444456667888888887
Q ss_pred HhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcC-CCcHHHHHHHHHHHHHhcCC
Q 044293 101 IQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSA-PSNPAGHHLLSSLAELVQFH 165 (236)
Q Consensus 101 L~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~aL~~L~~~~ 165 (236)
+-.- .+-++..|..+|+++-....|-.- .....|+.+++. ++..+++.| |.|+..++
T Consensus 141 ~~DR-E~~VR~eAv~~L~~~Qe~~~neen----~~~n~l~~~vqnDPS~EVRr~a---llni~vdn 198 (885)
T COG5218 141 LFDR-EKAVRREAVKVLCYYQEMELNEEN----RIVNLLKDIVQNDPSDEVRRLA---LLNISVDN 198 (885)
T ss_pred Hhcc-hHHHHHHHHHHHHHHHhccCChHH----HHHHHHHHHHhcCcHHHHHHHH---HHHeeeCC
Confidence 6655 578999999999988765543322 233466667765 455565544 34544433
No 193
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=92.57 E-value=1 Score=31.00 Aligned_cols=94 Identities=15% Similarity=0.098 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHh
Q 044293 23 EDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQ 102 (236)
Q Consensus 23 ~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~ 102 (236)
++|..|+.-+..=-.++--.-..+.+..+.+..|+..++.+.....+.++..+..+..+|.....+.+-|+...|.++=.
T Consensus 2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~ 81 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRP 81 (98)
T ss_pred hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHh
Confidence 56676766654322221111222232237788888888877767788999999999999999999999999988666654
Q ss_pred ccCCHHHHHHHHHHH
Q 044293 103 SSSSQETVKLASSLI 117 (236)
Q Consensus 103 ~~~~~~~~~~a~~~L 117 (236)
.. +++.+...-.++
T Consensus 82 ~~-~~~~~~~id~il 95 (98)
T PF14726_consen 82 NV-EPNLQAEIDEIL 95 (98)
T ss_pred cC-CHHHHHHHHHHH
Confidence 44 566655554444
No 194
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=92.57 E-value=0.4 Score=38.49 Aligned_cols=80 Identities=18% Similarity=0.168 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhhCCCCchhHHhhhccc-------HHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhh-hhc-ccCcHH
Q 044293 67 IRTLSLSILLNLSLNPDLKQSLASMET-------IYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKA-RFG-VAGTVQ 137 (236)
Q Consensus 67 ~~~~a~~~L~~l~~~~~~~~~i~~~g~-------i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~-~i~-~~g~i~ 137 (236)
-|+-|+.+|+.|+..+.|-+.+...+- ...|+++|...+++-.++-|...|.+|+..++.-. .+. +.+.|.
T Consensus 140 PqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~ 219 (257)
T PF12031_consen 140 PQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCIS 219 (257)
T ss_pred HHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHH
Confidence 378999999999999999888876543 33344444444488999999999999999875443 333 489999
Q ss_pred HHHHhhcCC
Q 044293 138 VLVKAVSAP 146 (236)
Q Consensus 138 ~Lv~lL~~~ 146 (236)
.|+.++.+.
T Consensus 220 ~Li~FiE~a 228 (257)
T PF12031_consen 220 HLIAFIEDA 228 (257)
T ss_pred HHHHHHHHH
Confidence 999999644
No 195
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=92.39 E-value=5.9 Score=33.24 Aligned_cols=216 Identities=13% Similarity=0.126 Sum_probs=139.8
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHH----HHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCc
Q 044293 8 ETINNCVSRSQSDSYEDQQKALQTLASITRVSPQY----RSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPD 83 (236)
Q Consensus 8 ~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~----~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~ 83 (236)
+....+++.+...+-+.+..++....++-..+-+. .+.+...+..+..|+.--.. .+++--.+-..+..+..++.
T Consensus 79 ~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlrEcirhe~ 157 (342)
T KOG1566|consen 79 DVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLRECIRHEF 157 (342)
T ss_pred CchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHHHHHhhHH
Confidence 35566677776666666666666555554332111 22233222344444433111 24554445556677788887
Q ss_pred hhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcc-cchhhhhhccc----CcHHHHHHhhcCCCcHHHHHHHHHH
Q 044293 84 LKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAM-LDKNKARFGVA----GTVQVLVKAVSAPSNPAGHHLLSSL 158 (236)
Q Consensus 84 ~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~-~~~~~~~i~~~----g~i~~Lv~lL~~~~~~~~~~a~~aL 158 (236)
-...+....-........+.+ +-++...|..+...+-. +......+... -..+.--+++.++|.-+++.+.+.|
T Consensus 158 LakiiL~s~~~~~FF~~vq~p-~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~kll 236 (342)
T KOG1566|consen 158 LAKIILESTNFEKFFLYVQLP-NFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSLKLL 236 (342)
T ss_pred HHHHHHcchhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHHHhH
Confidence 767777777888888888888 78898899999886644 33333444332 2244466888999999999999999
Q ss_pred HHHhcCCCChHHHHH----hCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChh----hHHHHHhcCCcHHHHHHHhhC
Q 044293 159 AELVQFHGNSTLAVR----AGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDE----GMIALTKTDQIVSLMVDVLKG 229 (236)
Q Consensus 159 ~~L~~~~~~~~~~~~----~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~----~~~~i~~~g~~i~~lv~~l~~ 229 (236)
+.+-....|...|.+ ...+..++.+|++.+ ..++-.|.-+......+|. .+..++.. -+.|++++..
T Consensus 237 g~llldr~N~~~M~kYiss~enLKlmM~llrdks-kniQ~eAFhvFKvfvAnpnK~q~V~~IL~~N---r~KLl~~l~~ 311 (342)
T KOG1566|consen 237 GELLLDRSNSAVMTKYISSPENLKLMMNLLRDKS-KNIQLEAFHVFKVFVANPNKPQPVRDILVRN---RPKLLELLHD 311 (342)
T ss_pred HHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCcc-ccchHHHHHHHHHHhcCCCCCchHHHHHHhC---cHHHHHHHHH
Confidence 999998888766654 367888999999874 6788888888877665542 33334432 2677776654
No 196
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=92.30 E-value=7.7 Score=34.36 Aligned_cols=185 Identities=15% Similarity=0.142 Sum_probs=107.3
Q ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHHhcC-ChHHHHHHHhccCcHHHHHhhccC-CChHHHHHHHHHHHhhCCCCchh
Q 044293 9 TINNCVSRSQSD-SYEDQQKALQTLASITRV-SPQYRSLLAQTDGAISTLLGLSKS-SSPIIRTLSLSILLNLSLNPDLK 85 (236)
Q Consensus 9 ~i~~lv~~L~~~-~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~ 85 (236)
.|..+++-++.+ ..+.+..|+..|..+..+ +-..++.... -++..+++.|+. .++..+..|+++|..++.+...|
T Consensus 287 ~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~--~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~ 364 (516)
T KOG2956|consen 287 LVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFA--EILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPAR 364 (516)
T ss_pred HHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHH--HHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHh
Confidence 444455555433 455677788867665554 3445554443 368888888876 67788899999999988765443
Q ss_pred HHhhhcccHHHHHHHHhccCCHHHHHHHHHH-HHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcC
Q 044293 86 QSLASMETIYRLNWIIQSSSSQETVKLASSL-ICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQF 164 (236)
Q Consensus 86 ~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~-L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~ 164 (236)
-.=...-.|..+++.-+.. ..++...|.-. +.-++...- -. .|..+..++...+.+.-..++..+..++..
T Consensus 365 l~DstE~ai~K~Leaa~ds-~~~v~~~Aeed~~~~las~~P-~~------~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~ 436 (516)
T KOG2956|consen 365 LFDSTEIAICKVLEAAKDS-QDEVMRVAEEDCLTTLASHLP-LQ------CIVNISPLILTADEPRAVAVIKMLTKLFER 436 (516)
T ss_pred hhchHHHHHHHHHHHHhCC-chhHHHHHHHHHHHHHHhhCc-hh------HHHHHhhHHhcCcchHHHHHHHHHHHHHhh
Confidence 2211233566666665555 45555544433 333443331 11 233344445455555555666666666653
Q ss_pred CCChHHH-HHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHc
Q 044293 165 HGNSTLA-VRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLA 204 (236)
Q Consensus 165 ~~~~~~~-~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~ 204 (236)
-..-..+ +-.+..|.+++--.+.+ ..+++.|+.+|..+.
T Consensus 437 l~~EeL~~ll~diaP~~iqay~S~S-S~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 437 LSAEELLNLLPDIAPCVIQAYDSTS-STVRKTAVFCLVAMV 476 (516)
T ss_pred cCHHHHHHhhhhhhhHHHHHhcCch-HHhhhhHHHhHHHHH
Confidence 3222222 23578888998888763 567777777666554
No 197
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.10 E-value=4.6 Score=37.80 Aligned_cols=146 Identities=12% Similarity=0.092 Sum_probs=97.3
Q ss_pred HHHHHHHhhCCCCch-hHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccch-hhhhhcc-cCcHHHHHHhhcCC
Q 044293 70 LSLSILLNLSLNPDL-KQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDK-NKARFGV-AGTVQVLVKAVSAP 146 (236)
Q Consensus 70 ~a~~~L~~l~~~~~~-~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~-~g~i~~Lv~lL~~~ 146 (236)
.++.++.||+..++. |..+.+.-+++.+-..+... ++-.+..++..+.||...+. ...-+++ ...++.....+...
T Consensus 561 E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee-~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~ 639 (748)
T KOG4151|consen 561 EALEALTNLASISESDRQKILKEKALGKIEELMTEE-NPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVA 639 (748)
T ss_pred HHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcc-cHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhh
Confidence 567788888888765 77777665666655555555 78888899999999988773 4555665 66677777777665
Q ss_pred CcHHHHHHHHHHHHHhcCCCC-hHHHHH-hCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC-ChhhHHHHHhcC
Q 044293 147 SNPAGHHLLSSLAELVQFHGN-STLAVR-AGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR-FDEGMIALTKTD 217 (236)
Q Consensus 147 ~~~~~~~a~~aL~~L~~~~~~-~~~~~~-~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g 217 (236)
..+....++.++..+....+| |..+.+ ......++.++.+.+ .++++.-+.+..|+.. ..+..+.+....
T Consensus 640 ~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~-~~~qhrgl~~~ln~~~~~~ei~~~~~~~~ 712 (748)
T KOG4151|consen 640 DEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDED-DEIQHRGLVIILNLFEALFEIAEKIFETE 712 (748)
T ss_pred hhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCch-hhhhhhhhhhhhhHHHHHHHHHHHhccch
Confidence 555556666666655554333 332333 466677888888874 6788777777777554 335555555554
No 198
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=91.94 E-value=11 Score=35.53 Aligned_cols=169 Identities=15% Similarity=0.140 Sum_probs=108.7
Q ss_pred HHHHHhcCChHHHHHHHhccCcHHHHHhhccCC-ChHHHHHHHHHHHhhCCCCchhHHhhhcccHH--HHHHHHhccCCH
Q 044293 31 TLASITRVSPQYRSLLAQTDGAISTLLGLSKSS-SPIIRTLSLSILLNLSLNPDLKQSLASMETIY--RLNWIIQSSSSQ 107 (236)
Q Consensus 31 ~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~--~L~~lL~~~~~~ 107 (236)
+|++.+.+++++-+.+.+. |+...+...+... ..+.+..++..+.|++...+.+........+. .+-.++..-++.
T Consensus 494 ~l~~~t~~~~~~C~~~l~~-~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~ 572 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDN-GGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSI 572 (699)
T ss_pred HHHhhhcCCHHHHHHHHhc-ccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchh
Confidence 7889999999999999998 9999999999754 56788999999999998876655443222222 333333333123
Q ss_pred HHHHHHHHHHHHhcccchhhhh----------h--------------cccCcHHH-HHHhhcC-CCcHHHHHHHHHHHHH
Q 044293 108 ETVKLASSLICSLAMLDKNKAR----------F--------------GVAGTVQV-LVKAVSA-PSNPAGHHLLSSLAEL 161 (236)
Q Consensus 108 ~~~~~a~~~L~~Ls~~~~~~~~----------i--------------~~~g~i~~-Lv~lL~~-~~~~~~~~a~~aL~~L 161 (236)
+.--+|++.|..+..+.+.... + .....+.+ +.+++.. ..+..+-.|++++.++
T Consensus 573 ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~ 652 (699)
T KOG3665|consen 573 ERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNV 652 (699)
T ss_pred hHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHH
Confidence 6666788888877654221100 0 01122222 4444443 3455678889999998
Q ss_pred hc-CCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHH
Q 044293 162 VQ-FHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVL 200 (236)
Q Consensus 162 ~~-~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L 200 (236)
.. .+++++...+.|+++.+...-.......+.+.+..++
T Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 692 (699)
T KOG3665|consen 653 LEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVI 692 (699)
T ss_pred HHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHh
Confidence 87 5677888888999888877765432233444444333
No 199
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=91.74 E-value=3.4 Score=35.63 Aligned_cols=93 Identities=19% Similarity=0.205 Sum_probs=66.6
Q ss_pred cHHHHHhhccCC-ChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcc-cchhhhh
Q 044293 52 AISTLLGLSKSS-SPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAM-LDKNKAR 129 (236)
Q Consensus 52 ~i~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~-~~~~~~~ 129 (236)
-|..+++=+.+. ...+|..++--|+.-+.+++.+..+...|....+++.+....+......++.+++.+-. +..+-..
T Consensus 22 ev~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l 101 (361)
T PF07814_consen 22 EVEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL 101 (361)
T ss_pred HHHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence 377777777643 34677788888888888999999999999999999999543234366666666665544 4444444
Q ss_pred hcccCcHHHHHHhhc
Q 044293 130 FGVAGTVQVLVKAVS 144 (236)
Q Consensus 130 i~~~g~i~~Lv~lL~ 144 (236)
+.+.+....+++++.
T Consensus 102 ~~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 102 LLDRDSLRLLLKLLK 116 (361)
T ss_pred hhchhHHHHHHHHhc
Confidence 445677777788887
No 200
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.73 E-value=3.8 Score=36.35 Aligned_cols=150 Identities=13% Similarity=0.062 Sum_probs=88.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHh-hccCCChHHHHHHHHHHHhhCCCCch---
Q 044293 9 TINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLG-LSKSSSPIIRTLSLSILLNLSLNPDL--- 84 (236)
Q Consensus 9 ~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~-lL~~~~~~~~~~a~~~L~~l~~~~~~--- 84 (236)
++..+-...++++...+..|+..|.+.+..-|+..+..... .+..++. +.+..+.+++-.+..+|.-+...-.+
T Consensus 259 ~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~--~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l 336 (533)
T KOG2032|consen 259 VLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTT--QLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDL 336 (533)
T ss_pred HHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHH--HHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcch
Confidence 33344444457778889999999999998855544433332 4444443 34445677777777777655443333
Q ss_pred hHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhh--cc--cCcHHHHHHhhcCCCcHHHHHHHHHHHH
Q 044293 85 KQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARF--GV--AGTVQVLVKAVSAPSNPAGHHLLSSLAE 160 (236)
Q Consensus 85 ~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i--~~--~g~i~~Lv~lL~~~~~~~~~~a~~aL~~ 160 (236)
...+. +.--.+..+.++. +++++..|..+...|+.....+... .+ .+...+++-.|+++++.+ -.|+++...
T Consensus 337 ~~~~l--~ialrlR~l~~se-~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~v-a~ACr~~~~ 412 (533)
T KOG2032|consen 337 ESYLL--NIALRLRTLFDSE-DDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYV-ARACRSELR 412 (533)
T ss_pred hhhch--hHHHHHHHHHHhc-ChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHH-HHHHHHHHH
Confidence 22222 2223455566666 7899988888877777665433332 22 344556777777777644 455555555
Q ss_pred HhcC
Q 044293 161 LVQF 164 (236)
Q Consensus 161 L~~~ 164 (236)
.|..
T Consensus 413 ~c~p 416 (533)
T KOG2032|consen 413 TCYP 416 (533)
T ss_pred hcCc
Confidence 4443
No 201
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=91.73 E-value=6.5 Score=32.30 Aligned_cols=197 Identities=17% Similarity=0.178 Sum_probs=105.6
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHhcC----ChHHHHHHHhc-----c-CcHHHHHhh----ccCCChHHHHHHHHHHHhhC
Q 044293 14 VSRSQSDSYEDQQKALQTLASITRV----SPQYRSLLAQT-----D-GAISTLLGL----SKSSSPIIRTLSLSILLNLS 79 (236)
Q Consensus 14 v~~L~~~~~~~~~~a~~~L~~l~~~----~~~~~~~i~~~-----~-g~i~~Lv~l----L~~~~~~~~~~a~~~L~~l~ 79 (236)
+..|.+..+.+-..|+..|..+... ++..++.+.+. + |..+-+..+ |.+. ...+.++.+|..+.
T Consensus 13 vAcL~S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss--~t~e~tl~lL~~L~ 90 (262)
T PF14225_consen 13 VACLESIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSS--STYELTLRLLSRLT 90 (262)
T ss_pred HHhhcCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCC--CcHHHHHHHHHHHh
Confidence 4556666666666666666655432 22333333221 1 333333333 3332 34556777777776
Q ss_pred CCCch--------hHHhhhcccHHHHHHHHhccCC----HHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCC
Q 044293 80 LNPDL--------KQSLASMETIYRLNWIIQSSSS----QETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPS 147 (236)
Q Consensus 80 ~~~~~--------~~~i~~~g~i~~L~~lL~~~~~----~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~ 147 (236)
..+++ |-.+.-.+.+|.++..+..+ + .+....+|..|..+|.... .+.+..++.....+.
T Consensus 91 ~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~-~~i~~~~~~~~~A~~La~~a~~~~-------~~~La~il~~ya~~~ 162 (262)
T PF14225_consen 91 PLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDP-NPIQPDQECIEIAEALAQVAEAQG-------LPNLARILSSYAKGR 162 (262)
T ss_pred cCCCccccCCCCccHHHHHHHHHHHHHHHhccc-ccccccHHHHHHHHHHHHHHHhCC-------CccHHHHHHHHHhcC
Confidence 65433 33333345677777777766 3 1344566777787773321 233444444443332
Q ss_pred cH----HHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChhhHHHHHhcCCcHHHH
Q 044293 148 NP----AGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGMIALTKTDQIVSLM 223 (236)
Q Consensus 148 ~~----~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~~i~~l 223 (236)
.+ ....++.+|+.-.. ++. ....+..++.+|..+. +-++...+.+|..+-.+.+.+.. ...+ ++.++
T Consensus 163 fr~~~dfl~~v~~~l~~~f~-P~~-----~~~~l~~Ll~lL~n~~-~w~~~~~L~iL~~ll~~~d~~~~-~~~d-lispl 233 (262)
T PF14225_consen 163 FRDKDDFLSQVVSYLREAFF-PDH-----EFQILTFLLGLLENGP-PWLRRKTLQILKVLLPHVDMRSP-HGAD-LISPL 233 (262)
T ss_pred CCCHHHHHHHHHHHHHHHhC-chh-----HHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhccccCCCC-cchH-HHHHH
Confidence 22 23333344332221 111 2244567888887763 67888899999988877666555 2222 67888
Q ss_pred HHHhhC
Q 044293 224 VDVLKG 229 (236)
Q Consensus 224 v~~l~~ 229 (236)
+++++.
T Consensus 234 lrlL~t 239 (262)
T PF14225_consen 234 LRLLQT 239 (262)
T ss_pred HHHhCC
Confidence 887764
No 202
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=91.59 E-value=2 Score=31.32 Aligned_cols=72 Identities=14% Similarity=0.207 Sum_probs=58.8
Q ss_pred HHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-ChHHHHHHHhccCcHHHHHhhccCCC--hHHHHHHHHHHHhh
Q 044293 6 VRETINNCVSRSQSDSYEDQQKALQTLASITRV-SPQYRSLLAQTDGAISTLLGLSKSSS--PIIRTLSLSILLNL 78 (236)
Q Consensus 6 ~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~~g~i~~Lv~lL~~~~--~~~~~~a~~~L~~l 78 (236)
..+.+..+.+.|+++++.++..|+..|-.+..+ .......+... +++..|+.+++... +.++..++..+..-
T Consensus 35 ~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~-~fl~~L~~l~~~~~~~~~Vk~kil~li~~W 109 (133)
T smart00288 35 PKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASK-EFLNELVKLIKPKYPLPLVKKRILELIQEW 109 (133)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhH-HHHHHHHHHHcCCCCcHHHHHHHHHHHHHH
Confidence 467888999999999999999999999988887 46677888876 89999999987643 34888888877654
No 203
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.56 E-value=12 Score=36.18 Aligned_cols=140 Identities=12% Similarity=0.082 Sum_probs=84.7
Q ss_pred hHHHhHHHHHHHHhc------CCC--HHHHHHHHHHHHHHhc---CChHHHHHHHhccCcHHHHHhhccCCChHHHHHHH
Q 044293 4 PRVRETINNCVSRSQ------SDS--YEDQQKALQTLASITR---VSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSL 72 (236)
Q Consensus 4 ~~~~~~i~~lv~~L~------~~~--~~~~~~a~~~L~~l~~---~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~ 72 (236)
|..++.++.+++-|. .++ +.-...|+..+..++. .....+..+... .+..+...++++-.-.|..|+
T Consensus 406 e~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~f--lv~hVfP~f~s~~g~Lrarac 483 (1010)
T KOG1991|consen 406 ETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYF--LVNHVFPEFQSPYGYLRARAC 483 (1010)
T ss_pred hhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHH--HHHHhhHhhcCchhHHHHHHH
Confidence 456778888888886 222 2233446666666652 222334444332 556666677888888899999
Q ss_pred HHHHhhCCCC-chhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccc-hhhhhhcc--cCcHHHHHHhhcCCC
Q 044293 73 SILLNLSLNP-DLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLD-KNKARFGV--AGTVQVLVKAVSAPS 147 (236)
Q Consensus 73 ~~L~~l~~~~-~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~--~g~i~~Lv~lL~~~~ 147 (236)
+++..++.-+ .+...+ ..++......|.++.+.-++..|+-+|.-+-.+. .....+.. .+.++.|+++.+.-+
T Consensus 484 ~vl~~~~~~df~d~~~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~E 560 (1010)
T KOG1991|consen 484 WVLSQFSSIDFKDPNNL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVE 560 (1010)
T ss_pred HHHHHHHhccCCChHHH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcc
Confidence 9999888422 111111 2345566666764436778888888888665444 33333433 567777777777543
No 204
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=91.08 E-value=4.4 Score=30.55 Aligned_cols=148 Identities=13% Similarity=0.143 Sum_probs=80.9
Q ss_pred hHHHhHHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCC
Q 044293 4 PRVRETINNCVSRSQSD-SYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNP 82 (236)
Q Consensus 4 ~~~~~~i~~lv~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~ 82 (236)
.+.++..+.|...|+++ ++++|+++++.|..+..-+|...+.+... .+.-. -...+..... ..+.+....+
T Consensus 6 ~~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~---~~~~~--~~~~~~~~~~---~~l~~~~~~~ 77 (160)
T PF11865_consen 6 LDYPELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKS---LDSKS--SENSNDESTD---ISLPMMGISP 77 (160)
T ss_pred HHhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccccc---CCccc--cccccccchh---hHHhhccCCC
Confidence 35677888999999854 68899999999999988877654434332 11000 0011111111 1222222211
Q ss_pred chhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhh-hhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHH
Q 044293 83 DLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNK-ARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAEL 161 (236)
Q Consensus 83 ~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L 161 (236)
.-....-...+..|+++|+...-..-...+..++.++-.....+ .... .-.+|.++..+++.++..++....-|..|
T Consensus 78 -~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L-~~viP~~l~~i~~~~~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 78 -SSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYL-PQVIPIFLRVIRTCPDSLREFYFQQLADL 155 (160)
T ss_pred -chHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHH-HHHhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 12222233467788888886522222233445554443322212 1111 57889999999977766666655555544
No 205
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=90.97 E-value=0.45 Score=39.86 Aligned_cols=74 Identities=16% Similarity=0.145 Sum_probs=62.4
Q ss_pred hHHHhHHHHHHHHhcCCCHH-HHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhh
Q 044293 4 PRVRETINNCVSRSQSDSYE-DQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNL 78 (236)
Q Consensus 4 ~~~~~~i~~lv~~L~~~~~~-~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l 78 (236)
++-.+.+..|...++.+++. ..+-|+.-+..+....|+.+..+.+- |+=+.+.+++++++++++-.|+.++..+
T Consensus 352 kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Ky-g~k~~im~L~nh~d~~VkfeAl~a~q~~ 426 (432)
T COG5231 352 KDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKY-GVKEIIMNLINHDDDDVKFEALQALQTC 426 (432)
T ss_pred hhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHh-hhHHHHHHHhcCCCchhhHHHHHHHHHH
Confidence 45567888999999877665 44557788888888889999999998 9999999999999999999999988654
No 206
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=90.94 E-value=11 Score=36.73 Aligned_cols=211 Identities=15% Similarity=0.072 Sum_probs=123.7
Q ss_pred hHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCC-hHHHHHHHHHHHhhCCCC
Q 044293 4 PRVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSS-PIIRTLSLSILLNLSLNP 82 (236)
Q Consensus 4 ~~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~l~~~~ 82 (236)
+-++..|..|.+.|++.+..++-.|++-+..++...| ..++. .+|...+++++..+ +..--.++-+|+.++.-.
T Consensus 337 eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp---~~Lad--~vi~svid~~~p~e~~~aWHgacLaLAELA~rG 411 (1133)
T KOG1943|consen 337 EIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP---PELAD--QVIGSVIDLFNPAEDDSAWHGACLALAELALRG 411 (1133)
T ss_pred HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCc---HHHHH--HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC
Confidence 3345667777777778888888889999999988765 33443 47778888776544 455567888888887633
Q ss_pred chhHHhhhcccHHHHHHHHhcc-------CCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHH-----HhhcCCCcHH
Q 044293 83 DLKQSLASMETIYRLNWIIQSS-------SSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLV-----KAVSAPSNPA 150 (236)
Q Consensus 83 ~~~~~i~~~g~i~~L~~lL~~~-------~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv-----~lL~~~~~~~ 150 (236)
--..... ...+|.+++-|.-. .-..+|..|+-++|.++...+.... .+.+..|. ..+-+....+
T Consensus 412 lLlps~l-~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l---~p~l~~L~s~LL~~AlFDrevnc 487 (1133)
T KOG1943|consen 412 LLLPSLL-EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDL---KPVLQSLASALLIVALFDREVNC 487 (1133)
T ss_pred CcchHHH-HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhh---hHHHHHHHHHHHHHHhcCchhhH
Confidence 2222111 24566666655422 1346788888888888776542211 12333233 3334555567
Q ss_pred HHHHHHHHHHHhcCCC---------------------C-----hHHHHH-hCcHHHHHHHhcCC---C-hhhHHHHHHHH
Q 044293 151 GHHLLSSLAELVQFHG---------------------N-----STLAVR-AGAVSELIHLIGST---E-AEDLAGTSLAV 199 (236)
Q Consensus 151 ~~~a~~aL~~L~~~~~---------------------~-----~~~~~~-~g~i~~lv~ll~~~---~-~~~~~~~a~~~ 199 (236)
++.|..|+-....-.. | +..+.+ .|-..++++-+... . +..+++.+..+
T Consensus 488 RRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~a 567 (1133)
T KOG1943|consen 488 RRAASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYA 567 (1133)
T ss_pred hHHHHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHH
Confidence 7888888755432111 1 122222 34455566655443 1 46788999999
Q ss_pred HHHHcC-ChhhHHHHHhcCCcHHHHHHHhh
Q 044293 200 LNLLAR-FDEGMIALTKTDQIVSLMVDVLK 228 (236)
Q Consensus 200 L~~l~~-~~~~~~~i~~~g~~i~~lv~~l~ 228 (236)
|..|+. .|+ ....+ ..++++...-
T Consensus 568 L~~Ls~~~pk----~~a~~-~L~~lld~~l 592 (1133)
T KOG1943|consen 568 LHKLSLTEPK----YLADY-VLPPLLDSTL 592 (1133)
T ss_pred HHHHHHhhHH----hhccc-chhhhhhhhc
Confidence 988764 233 23323 4566666443
No 207
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=90.67 E-value=11 Score=34.38 Aligned_cols=39 Identities=15% Similarity=0.123 Sum_probs=33.8
Q ss_pred CchHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCh
Q 044293 2 SAPRVRETINNCVSRSQSDSYEDQQKALQTLASITRVSP 40 (236)
Q Consensus 2 ~~~~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~ 40 (236)
+.+++.++|..|-.+|++.....|..|.+.|..++-..|
T Consensus 297 ~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P 335 (898)
T COG5240 297 GSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYP 335 (898)
T ss_pred CHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCC
Confidence 567788999999999999988899999999999887655
No 208
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=90.59 E-value=2.7 Score=31.88 Aligned_cols=113 Identities=18% Similarity=0.177 Sum_probs=72.0
Q ss_pred hHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHh-ccCcHHHHHhhccCCCh-HHHHHHHHHHHhh---
Q 044293 4 PRVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQ-TDGAISTLLGLSKSSSP-IIRTLSLSILLNL--- 78 (236)
Q Consensus 4 ~~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~-~~g~i~~Lv~lL~~~~~-~~~~~a~~~L~~l--- 78 (236)
.++...+.++.++|+++++..+-.++..+...+.++. .+.|.+ ..-++..++..|+.+++ .+.+.++.+|..+
T Consensus 21 ~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~ 98 (165)
T PF08167_consen 21 SALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDL 98 (165)
T ss_pred HHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 4567778888899999898888888888888877531 344422 23578889999987654 4455566655543
Q ss_pred -CCCCchhHHhhh---cccHHHHHHHHhccCCHHHHHHHHHHHHHhc
Q 044293 79 -SLNPDLKQSLAS---METIYRLNWIIQSSSSQETVKLASSLICSLA 121 (236)
Q Consensus 79 -~~~~~~~~~i~~---~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls 121 (236)
...++..+.+.. .+.++.++.+++. ......+..+|..+-
T Consensus 99 ~~~~p~l~Rei~tp~l~~~i~~ll~l~~~---~~~~~~~l~~L~~ll 142 (165)
T PF08167_consen 99 IRGKPTLTREIATPNLPKFIQSLLQLLQD---SSCPETALDALATLL 142 (165)
T ss_pred hcCCCchHHHHhhccHHHHHHHHHHHHhc---cccHHHHHHHHHHHH
Confidence 444554444432 3566666666653 244555555555543
No 209
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=90.37 E-value=13 Score=35.67 Aligned_cols=179 Identities=14% Similarity=0.083 Sum_probs=108.6
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhcc----CCChHHHHHHHHHHHhhCCCCchhHHh
Q 044293 13 CVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSK----SSSPIIRTLSLSILLNLSLNPDLKQSL 88 (236)
Q Consensus 13 lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~----~~~~~~~~~a~~~L~~l~~~~~~~~~i 88 (236)
+-..+.+++...+.+|++.+.....+.. .+ ... |....+..++. ..+..+.-.++..|..++..-.....=
T Consensus 258 l~t~~~s~~WK~R~Eale~l~~~l~e~~--~~--~~~-~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~ 332 (815)
T KOG1820|consen 258 LETEMLSKKWKDRKEALEELVAILEEAK--KE--IVK-GYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRK 332 (815)
T ss_pred HHHhhhccchHHHHHHHHHHHHHHhccc--cc--ccc-CcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHH
Confidence 3344457888899999999988877532 11 122 44444433332 234455666777777776642211111
Q ss_pred hhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcC-C-C
Q 044293 89 ASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQF-H-G 166 (236)
Q Consensus 89 ~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~-~-~ 166 (236)
...+..+.|++.+... ...++..+..++-..+.. ..-...++.+...+..+++..+..+...+...-.. + .
T Consensus 333 ~~~~v~p~lld~lkek-k~~l~d~l~~~~d~~~ns------~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~ 405 (815)
T KOG1820|consen 333 YAKNVFPSLLDRLKEK-KSELRDALLKALDAILNS------TPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPK 405 (815)
T ss_pred HHHhhcchHHHHhhhc-cHHHHHHHHHHHHHHHhc------ccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCc
Confidence 1346778888888765 456665555554433331 11145578888899999998887776666544432 2 2
Q ss_pred ChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHc
Q 044293 167 NSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLA 204 (236)
Q Consensus 167 ~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~ 204 (236)
....-.-.+++|.++...++.+ .++++.+..++.-+.
T Consensus 406 ~~~~~t~~~l~p~~~~~~~D~~-~~VR~Aa~e~~~~v~ 442 (815)
T KOG1820|consen 406 TVEKETVKTLVPHLIKHINDTD-KDVRKAALEAVAAVM 442 (815)
T ss_pred CcchhhHHHHhHHHhhhccCCc-HHHHHHHHHHHHHHH
Confidence 3333333578899999998875 678888777776554
No 210
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=90.13 E-value=2.4 Score=32.18 Aligned_cols=110 Identities=17% Similarity=0.130 Sum_probs=72.1
Q ss_pred CcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhhh--cccHHHHHHHHhccCCHHHHHHHHHHHHHhccc----c
Q 044293 51 GAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLAS--METIYRLNWIIQSSSSQETVKLASSLICSLAML----D 124 (236)
Q Consensus 51 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~--~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~----~ 124 (236)
..+..+..+|++++++-+-.++..+...+.... ...+.+ .-.+..++.+|+..+...+++.+..+|..+... +
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p 103 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP 103 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 467778889999888877777777766555322 344433 347888889998875677888888887766433 3
Q ss_pred hhhhhhcc---cCcHHHHHHhhcCCCcHHHHHHHHHHHHHhc
Q 044293 125 KNKARFGV---AGTVQVLVKAVSAPSNPAGHHLLSSLAELVQ 163 (236)
Q Consensus 125 ~~~~~i~~---~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~ 163 (236)
+..+++.. .++++.+++++.+ ......++.+|..+-.
T Consensus 104 ~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 104 TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLP 143 (165)
T ss_pred chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHH
Confidence 43444432 4556666666654 3556677777766654
No 211
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.01 E-value=14 Score=37.42 Aligned_cols=196 Identities=10% Similarity=0.024 Sum_probs=107.7
Q ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCChH-HHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhH
Q 044293 9 TINNCVSRSQSD-SYEDQQKALQTLASITRVSPQ-YRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQ 86 (236)
Q Consensus 9 ~i~~lv~~L~~~-~~~~~~~a~~~L~~l~~~~~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~ 86 (236)
.|=+++++-+++ ....+..|+--+..++...-+ .+..+. -.||.|.++=-.+++.+|.....+=..|..++.+--
T Consensus 957 LVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~---kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~v 1033 (1702)
T KOG0915|consen 957 LVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLK---KLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVV 1033 (1702)
T ss_pred HHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHHH---HhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHH
Confidence 444455555432 344555555555555544222 233332 357777777556677777544444444555544322
Q ss_pred HhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcc-cCcHHHHHHhhcCCCcHHHH---HHHHHHHHHh
Q 044293 87 SLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGV-AGTVQVLVKAVSAPSNPAGH---HLLSSLAELV 162 (236)
Q Consensus 87 ~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~---~a~~aL~~L~ 162 (236)
.-.-+..+.-|+.-|.+. .--+|+.++.+|.-|-....+-+.... ...-..+++.+.+-...+++ .++++|..||
T Consensus 1034 d~y~neIl~eLL~~lt~k-ewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~ 1112 (1702)
T KOG0915|consen 1034 DEYLNEILDELLVNLTSK-EWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLC 1112 (1702)
T ss_pred HHHHHHHHHHHHHhccch-hHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222245566666655544 456889999999988776544333322 34555566666554444553 5566777766
Q ss_pred c---C--CCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChh
Q 044293 163 Q---F--HGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDE 208 (236)
Q Consensus 163 ~---~--~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~ 208 (236)
. + +..+..-.-..++|.+++-=--++-.+++..++.++.-|+.+..
T Consensus 1113 vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg 1163 (1702)
T KOG0915|consen 1113 VRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSG 1163 (1702)
T ss_pred hhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhch
Confidence 4 1 11222222345566665521112356889999999999986543
No 212
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=89.94 E-value=3.7 Score=40.22 Aligned_cols=142 Identities=14% Similarity=0.061 Sum_probs=101.6
Q ss_pred cHHHHHhhccC----CChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhh
Q 044293 52 AISTLLGLSKS----SSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNK 127 (236)
Q Consensus 52 ~i~~Lv~lL~~----~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~ 127 (236)
..|.++...++ ++|++|..|.-+|+-+..-+.. +. .--+|.|+..+....++-++-++..++.-|+..--|-
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~---fc-es~l~llftimeksp~p~IRsN~VvalgDlav~fpnl 995 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAE---FC-ESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNL 995 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHH---HH-HHHHHHHHHHHhcCCCceeeecchheccchhhhcccc
Confidence 56667776643 4789998888888865443321 11 2357889999985447889999999988877643221
Q ss_pred hhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCC
Q 044293 128 ARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARF 206 (236)
Q Consensus 128 ~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~ 206 (236)
.+ -.-+.|...|++.++.+++.|+.+|.+|-..+..+. .|.++-+...+.+++ +++...|=.-+..|+..
T Consensus 996 ---ie-~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiKV----KGql~eMA~cl~D~~-~~IsdlAk~FF~Els~k 1065 (1251)
T KOG0414|consen 996 ---IE-PWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIKV----KGQLSEMALCLEDPN-AEISDLAKSFFKELSSK 1065 (1251)
T ss_pred ---cc-hhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHh----cccHHHHHHHhcCCc-HHHHHHHHHHHHHhhhc
Confidence 12 234778888999999999999999999988654433 589999999998884 77877776555555543
No 213
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=89.91 E-value=11 Score=34.37 Aligned_cols=184 Identities=10% Similarity=0.078 Sum_probs=109.3
Q ss_pred cCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCC-----------ch--
Q 044293 18 QSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNP-----------DL-- 84 (236)
Q Consensus 18 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~-----------~~-- 84 (236)
+.++.++|..|.-+|.++..-+...-+...|. -..........+++.++...+...-..+|..+ +.
T Consensus 231 q~~d~e~q~aafgCl~kim~LyY~fm~~ymE~-aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~ 309 (858)
T COG5215 231 QGNDEELQHAAFGCLNKIMMLYYKFMQSYMEN-ALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPA 309 (858)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCch
Confidence 56788899988888887765444444444444 45555667788888887666665543333211 10
Q ss_pred -hHHh---hhcccHHHHHHHHhcc-C-----CHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHH
Q 044293 85 -KQSL---ASMETIYRLNWIIQSS-S-----SQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHL 154 (236)
Q Consensus 85 -~~~i---~~~g~i~~L~~lL~~~-~-----~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a 154 (236)
-..+ .-.+.+|.|+.+|... . +=.....|.++|--.+.... ..|.+. .+...=+-+++++-.-++.+
T Consensus 310 qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~g--d~i~~p-Vl~FvEqni~~~~w~nreaa 386 (858)
T COG5215 310 QNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKG--DKIMRP-VLGFVEQNIRSESWANREAA 386 (858)
T ss_pred hhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhh--hHhHHH-HHHHHHHhccCchhhhHHHH
Confidence 0011 1346899999999862 1 11233445566555555442 223332 33333355666666667888
Q ss_pred HHHHHHHhcCC-CChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCC
Q 044293 155 LSSLAELVQFH-GNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARF 206 (236)
Q Consensus 155 ~~aL~~L~~~~-~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~ 206 (236)
+.+++..-..+ +.+..-+-..++|.+...+.++. --+++.+++++..++.+
T Consensus 387 vmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~-l~vk~ttAwc~g~iad~ 438 (858)
T COG5215 387 VMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSC-LWVKSTTAWCFGAIADH 438 (858)
T ss_pred HHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccce-eehhhHHHHHHHHHHHH
Confidence 88887665544 22333344678899999998763 45667777778777644
No 214
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=89.31 E-value=2.2 Score=31.39 Aligned_cols=73 Identities=19% Similarity=0.241 Sum_probs=58.7
Q ss_pred hHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC-hHHHHHHHhccCcHHHHHhhccCC-ChH---HHHHHHHHHHh
Q 044293 4 PRVRETINNCVSRSQSDSYEDQQKALQTLASITRVS-PQYRSLLAQTDGAISTLLGLSKSS-SPI---IRTLSLSILLN 77 (236)
Q Consensus 4 ~~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~~g~i~~Lv~lL~~~-~~~---~~~~a~~~L~~ 77 (236)
....+.+..|.+.|+++++.++..|+..|-.+..+. +.....+... .++..|..++.+. ... +++.++..+..
T Consensus 38 ~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~-~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~ 115 (140)
T PF00790_consen 38 DGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASK-EFLDELVKLIKSKKTDPETPVKEKILELLQE 115 (140)
T ss_dssp THHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSH-HHHHHHHHHHHHTTTHHHSHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHH-HHHHHHHHHHccCCCCchhHHHHHHHHHHHH
Confidence 455788999999999999999999999999988874 5677888776 8999999987643 333 78888877764
No 215
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=89.26 E-value=7.2 Score=37.25 Aligned_cols=128 Identities=12% Similarity=0.124 Sum_probs=91.0
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhc--ccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCCChHHHHH
Q 044293 96 RLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFG--VAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVR 173 (236)
Q Consensus 96 ~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~--~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~ 173 (236)
..+..+.....+-++..|..+++.-+... .+. ..+++..|.++....+.++..-...+|+..|..+.......+
T Consensus 494 ~~v~~l~~~~~~~~ki~a~~~~~~~~~~~----vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~ 569 (1005)
T KOG2274|consen 494 ATVNALTMDVPPPVKISAVRAFCGYCKVK----VLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASME 569 (1005)
T ss_pred HHHHhhccCCCCchhHHHHHHHHhccCce----eccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhh
Confidence 33344443324556667777777666211 121 268888888888877778888888889888988877777788
Q ss_pred hCcHHHHHHHhcC-CChhhHHHHHHHHHHHHcCChhhHHHHHhcCCcHHHHHHHhhC
Q 044293 174 AGAVSELIHLIGS-TEAEDLAGTSLAVLNLLARFDEGMIALTKTDQIVSLMVDVLKG 229 (236)
Q Consensus 174 ~g~i~~lv~ll~~-~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~~i~~lv~~l~~ 229 (236)
....|..+.++.. +++|.+...+-.++..++...++...+.+. ++|.++.++..
T Consensus 570 skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e~--~iPslisil~~ 624 (1005)
T KOG2274|consen 570 SKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQER--LIPSLISVLQL 624 (1005)
T ss_pred cchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHHH--HHHHHHHHHcC
Confidence 8899998888743 445778888888888888766666666553 47999998864
No 216
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.73 E-value=17 Score=32.46 Aligned_cols=146 Identities=9% Similarity=-0.044 Sum_probs=86.4
Q ss_pred CCChHHHHHHHHHHHhhCCC-CchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHH---
Q 044293 62 SSSPIIRTLSLSILLNLSLN-PDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQ--- 137 (236)
Q Consensus 62 ~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~--- 137 (236)
+++...+..|+..|.|.+.. |+-+.... .-.+..++.=|.++.+.++...+..+|.-...-..++... .+.++
T Consensus 269 dp~a~~r~~a~r~L~~~as~~P~kv~th~-~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~--~~~l~ial 345 (533)
T KOG2032|consen 269 DPSAKSRGMACRGLGNTASGAPDKVRTHK-TTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLE--SYLLNIAL 345 (533)
T ss_pred CchhHHHHHHHHHHHHHhccCcHHHHHhH-HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchh--hhchhHHH
Confidence 34557788999999998887 44333332 2345555555555547888888888888776655544432 33333
Q ss_pred HHHHhhcCCCcHHHHHHHHHHHHHhc--CCCChHHHHH--hCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChhhHHH
Q 044293 138 VLVKAVSAPSNPAGHHLLSSLAELVQ--FHGNSTLAVR--AGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGMIA 212 (236)
Q Consensus 138 ~Lv~lL~~~~~~~~~~a~~aL~~L~~--~~~~~~~~~~--~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 212 (236)
.+..+..+.+++.+..+...+..|+. +.+.++-+.+ -+...+++-.+.+.. +.+ -.|++.....|.-.-.|++
T Consensus 346 rlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~-p~v-a~ACr~~~~~c~p~l~rke 422 (533)
T KOG2032|consen 346 RLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPN-PYV-ARACRSELRTCYPNLVRKE 422 (533)
T ss_pred HHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCC-hHH-HHHHHHHHHhcCchhHHHH
Confidence 34455567788888888888888876 3344444443 223334444455442 323 4566666666654444444
No 217
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=88.68 E-value=7.1 Score=36.26 Aligned_cols=137 Identities=15% Similarity=0.147 Sum_probs=92.6
Q ss_pred chHH-HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhh-ccCCChHHHHHHHHHHHhhCC
Q 044293 3 APRV-RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGL-SKSSSPIIRTLSLSILLNLSL 80 (236)
Q Consensus 3 ~~~~-~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~l-L~~~~~~~~~~a~~~L~~l~~ 80 (236)
+|++ +..+|.|..-+++++..+|..++..+..++..= -..+++. -++|.+-++ +.+.+..++.+++.++..+.
T Consensus 383 ~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~i---D~~~vk~-~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~- 457 (700)
T KOG2137|consen 383 PEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESI---DVPFVKQ-AILPRLKNLAFKTTNLYVKVNVLPCLAGLI- 457 (700)
T ss_pred hHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhc---cHHHHHH-HHHHHhhcchhcccchHHHHHHHHHHHHHH-
Confidence 3444 445555566667888899999999998887652 2444554 688888887 34556788888888888777
Q ss_pred CCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCC
Q 044293 81 NPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPS 147 (236)
Q Consensus 81 ~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~ 147 (236)
+..+...-.+-+.++.+..+.. ++.+.--...+..++.....+..++.....+|.++-+...+.
T Consensus 458 --q~lD~~~v~d~~lpi~~~~~~~-dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 458 --QRLDKAAVLDELLPILKCIKTR-DPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred --HHHHHHHhHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhccc
Confidence 3333333334566677776666 788777777777777666654455556788888888776653
No 218
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=88.66 E-value=17 Score=36.88 Aligned_cols=140 Identities=12% Similarity=0.077 Sum_probs=88.5
Q ss_pred cCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCch--hHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhc-ccchh
Q 044293 50 DGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDL--KQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLA-MLDKN 126 (236)
Q Consensus 50 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~--~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls-~~~~~ 126 (236)
.+.+..++.+|..+.+.+|..|+.+|.++...|.. ...-+..|....+.+ . ...+|+.|.-.+.... ..++.
T Consensus 815 D~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~D----s-sasVREAaldLvGrfvl~~~e~ 889 (1692)
T KOG1020|consen 815 DPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLND----S-SASVREAALDLVGRFVLSIPEL 889 (1692)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhcc----c-hhHHHHHHHHHHhhhhhccHHH
Confidence 47888899999988899999999999998776543 233334555554443 3 6788888888887433 33322
Q ss_pred hhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcC-CChhh-HHHHHHHHHHHHc
Q 044293 127 KARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGS-TEAED-LAGTSLAVLNLLA 204 (236)
Q Consensus 127 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~-~~~~~-~~~~a~~~L~~l~ 204 (236)
-.+ ....+..=+.+....+++.+++.++.+|...++-..+. ...++++.. .|.++ +++.+..++..+=
T Consensus 890 ~~q-----yY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~-----~~cakmlrRv~DEEg~I~kLv~etf~klW 959 (1692)
T KOG1020|consen 890 IFQ-----YYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIV-----DMCAKMLRRVNDEEGNIKKLVRETFLKLW 959 (1692)
T ss_pred HHH-----HHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHH-----HHHHHHHHHhccchhHHHHHHHHHHHHHh
Confidence 222 23344444455667899999999999998655433322 223333322 12223 6666666666653
No 219
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=88.24 E-value=12 Score=30.08 Aligned_cols=139 Identities=17% Similarity=0.114 Sum_probs=88.6
Q ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHh
Q 044293 10 INNCVSRS-QSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSL 88 (236)
Q Consensus 10 i~~lv~~L-~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i 88 (236)
++.|+..+ +..+++.+...+..|..++.++..+.. -++..|..+...+..+.+-.+...+..+....+-.-
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~------~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f-- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVP------PVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF-- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchh------HHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH--
Confidence 34555544 467888999999999999987412222 356667777777766665566667766665443211
Q ss_pred hhcccHHHHHHHH--h-----c-c-CCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhh-cCCCcHHHHHHHHHH
Q 044293 89 ASMETIYRLNWII--Q-----S-S-SSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAV-SAPSNPAGHHLLSSL 158 (236)
Q Consensus 89 ~~~g~i~~L~~lL--~-----~-~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~a~~aL 158 (236)
+.+..++..+ + . + ...+.....+..+..++....+ .-...++.+...| .+.++..+..++.+|
T Consensus 74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l 146 (234)
T PF12530_consen 74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEAL 146 (234)
T ss_pred ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 4555444441 1 1 1 1234444456677777765544 2246788888888 677778889999999
Q ss_pred HHHhc
Q 044293 159 AELVQ 163 (236)
Q Consensus 159 ~~L~~ 163 (236)
..||.
T Consensus 147 ~~Lc~ 151 (234)
T PF12530_consen 147 APLCE 151 (234)
T ss_pred HHHHH
Confidence 99993
No 220
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=88.14 E-value=10 Score=34.03 Aligned_cols=119 Identities=17% Similarity=0.202 Sum_probs=76.5
Q ss_pred hHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCC-chhHHh----hhcccHHHHHHHHhccCCHHHHHHHH
Q 044293 40 PQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNP-DLKQSL----ASMETIYRLNWIIQSSSSQETVKLAS 114 (236)
Q Consensus 40 ~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~-~~~~~i----~~~g~i~~L~~lL~~~~~~~~~~~a~ 114 (236)
.+.-..+...++.|+.+++.+.. +.+...-+.++. .++ +.+..+ .+.+.|+.|+++|....+.+.+.+|+
T Consensus 10 ~e~l~Fik~~~~~v~~llkHI~~--~~ImDlLLklIs---~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa 84 (475)
T PF04499_consen 10 EEMLEFIKSQPNFVDNLLKHIDT--PAIMDLLLKLIS---TDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAA 84 (475)
T ss_pred HHHHHHHHhCccHHHHHHHhcCC--cHHHHHHHHHHc---cCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHH
Confidence 44555666667888888888754 344444333433 332 334433 46899999999998665788999999
Q ss_pred HHHHHhcccch--------------hhhhhcccCcHHHHHHhhcC-CCcHHHHHHHHHHHHHhc
Q 044293 115 SLICSLAMLDK--------------NKARFGVAGTVQVLVKAVSA-PSNPAGHHLLSSLAELVQ 163 (236)
Q Consensus 115 ~~L~~Ls~~~~--------------~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~aL~~L~~ 163 (236)
-+|+.+..... --..+.....|..|++.+-. .......+++.++..|.+
T Consensus 85 ~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIR 148 (475)
T PF04499_consen 85 DFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELIR 148 (475)
T ss_pred HHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Confidence 88887643221 12334457788888887774 334566777777766654
No 221
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=88.02 E-value=6.8 Score=27.51 Aligned_cols=73 Identities=16% Similarity=0.176 Sum_probs=52.6
Q ss_pred hHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-ChHHHHHHHhccCcHHHHHhhcc------CCChHHHHHHHHHHH
Q 044293 4 PRVRETINNCVSRSQSDSYEDQQKALQTLASITRV-SPQYRSLLAQTDGAISTLLGLSK------SSSPIIRTLSLSILL 76 (236)
Q Consensus 4 ~~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~~g~i~~Lv~lL~------~~~~~~~~~a~~~L~ 76 (236)
...++.+..+.+.|++.++.++.+|+..|-.+..+ ++.....+... .....++.+.. ..+..+++.+..++.
T Consensus 33 ~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~-~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~ 111 (115)
T cd00197 33 VGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASN-DFAVELLKFDKSKLLGDDVSTNVREKAIELVQ 111 (115)
T ss_pred ccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHh-HHHHHHHHhhccccccCCCChHHHHHHHHHHH
Confidence 34577888889999888999999999999998887 45667777776 66666655311 124577777776664
Q ss_pred h
Q 044293 77 N 77 (236)
Q Consensus 77 ~ 77 (236)
.
T Consensus 112 ~ 112 (115)
T cd00197 112 L 112 (115)
T ss_pred H
Confidence 4
No 222
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.48 E-value=23 Score=33.54 Aligned_cols=67 Identities=10% Similarity=0.067 Sum_probs=38.9
Q ss_pred HHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhc-cCCChHHHHHHHHHHHh
Q 044293 5 RVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLS-KSSSPIIRTLSLSILLN 77 (236)
Q Consensus 5 ~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~~a~~~L~~ 77 (236)
=+.+.+|.+.+-|.+..+=+|+.|.-++...-.. -+.+. +++-+.+-++| ...|+.+.++|.-.|..
T Consensus 131 Llepl~p~IracleHrhsYVRrNAilaifsIyk~----~~~L~--pDapeLi~~fL~~e~DpsCkRNAFi~L~~ 198 (948)
T KOG1058|consen 131 LLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKN----FEHLI--PDAPELIESFLLTEQDPSCKRNAFLMLFT 198 (948)
T ss_pred HhhhhHHHHHHHHhCcchhhhhhhheeehhHHhh----hhhhc--CChHHHHHHHHHhccCchhHHHHHHHHHh
Confidence 3455666667777777777777777666555332 23333 34444444444 34577777776665554
No 223
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.17 E-value=27 Score=33.08 Aligned_cols=76 Identities=13% Similarity=0.136 Sum_probs=39.2
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcC-----------CCcHHHHHHHHHHHHHhcC
Q 044293 96 RLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSA-----------PSNPAGHHLLSSLAELVQF 164 (236)
Q Consensus 96 ~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~-----------~~~~~~~~a~~aL~~L~~~ 164 (236)
-++.+|.+. +.+++..+......|+.... +.-++.+|+. .+..-+..-+.+++..+..
T Consensus 321 DvLrvLss~-dldvr~Ktldi~ldLvssrN----------vediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~ 389 (948)
T KOG1058|consen 321 DVLRVLSSP-DLDVRSKTLDIALDLVSSRN----------VEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVK 389 (948)
T ss_pred HHHHHcCcc-cccHHHHHHHHHHhhhhhcc----------HHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhc
Confidence 344445555 56666666666666655442 2333333321 1223355556667666653
Q ss_pred -CCChHHHHHhCcHHHHHHHhcCC
Q 044293 165 -HGNSTLAVRAGAVSELIHLIGST 187 (236)
Q Consensus 165 -~~~~~~~~~~g~i~~lv~ll~~~ 187 (236)
++.. +.++|.+++.+.+.
T Consensus 390 Fp~~a-----atvV~~ll~fisD~ 408 (948)
T KOG1058|consen 390 FPEVA-----ATVVSLLLDFISDS 408 (948)
T ss_pred ChHHH-----HHHHHHHHHHhccC
Confidence 3322 34567777777665
No 224
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=87.16 E-value=2.9 Score=38.59 Aligned_cols=183 Identities=12% Similarity=0.052 Sum_probs=112.9
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhH
Q 044293 7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQ 86 (236)
Q Consensus 7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~ 86 (236)
+..+|.++++++..|..+|..-+..+-.+... ....+.+. -++|.+..-+...++.+++.++..+..++..=..+
T Consensus 329 ~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~---Lt~~~~~d-~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~- 403 (690)
T KOG1243|consen 329 VRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDH---LTKQILND-QIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR- 403 (690)
T ss_pred cchhhhHHHHhcCcchHHHHHHHHhHHHHhhh---cCHHhhcc-hhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh-
Confidence 55789999999999999998777776666543 33444555 78888888888889999999888887765432222
Q ss_pred HhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCC
Q 044293 87 SLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHG 166 (236)
Q Consensus 87 ~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~ 166 (236)
..+...+..+-+ ++.++...++.+..-+|..++.+..... ...-.+.+..+-++++=.+.+..+..+++..+...+
T Consensus 404 -~Ln~Ellr~~ar-~q~d~~~~irtntticlgki~~~l~~~~--R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~ 479 (690)
T KOG1243|consen 404 -NLNGELLRYLAR-LQPDEHGGIRTNTTICLGKIAPHLAASV--RKRVLASAFTRALKDPFVPARKAGVLALAATQEYFD 479 (690)
T ss_pred -hhcHHHHHHHHh-hCccccCcccccceeeecccccccchhh--hccccchhhhhhhcCCCCCchhhhhHHHhhcccccc
Confidence 222223333333 3333256778787777777776542111 122233444555666656677888888777776555
Q ss_pred ChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHH
Q 044293 167 NSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLN 201 (236)
Q Consensus 167 ~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~ 201 (236)
.... ...++|.+.-+.-+.+ ..++..|-.++.
T Consensus 480 ~~~v--a~kIlp~l~pl~vd~e-~~vr~~a~~~i~ 511 (690)
T KOG1243|consen 480 QSEV--ANKILPSLVPLTVDPE-KTVRDTAEKAIR 511 (690)
T ss_pred hhhh--hhhccccccccccCcc-cchhhHHHHHHH
Confidence 4443 3456677777776653 344444444433
No 225
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=87.02 E-value=4 Score=27.71 Aligned_cols=69 Identities=16% Similarity=0.176 Sum_probs=53.3
Q ss_pred cHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC
Q 044293 135 TVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR 205 (236)
Q Consensus 135 ~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~ 205 (236)
.+...+..+.++.++++.+++..|+.|...+. ....-..+++..+...|++.+ +=+--+|+..|..|+.
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~D-syVYL~aI~~L~~La~ 72 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDED-SYVYLNAIKGLAALAD 72 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCC-chHHHHHHHHHHHHHH
Confidence 35566778888889999999999999998777 222223577788888888875 4466789999998885
No 226
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.96 E-value=19 Score=35.68 Aligned_cols=111 Identities=13% Similarity=0.125 Sum_probs=73.5
Q ss_pred HHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccC--
Q 044293 28 ALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSS-- 105 (236)
Q Consensus 28 a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~-- 105 (236)
+..+|..+.+++.+|...|.++ .|+..++.++- +.+-|...+.++..+-..+..+ +...-+-.+++.|+++-
T Consensus 662 gwDcLisllKnnteNqklFrea-nGvklilpfli--ndehRSslLrivscLitvdpkq---vhhqelmalVdtLksgmvt 735 (2799)
T KOG1788|consen 662 GWDCLISLLKNNTENQKLFREA-NGVKLILPFLI--NDEHRSSLLRIVSCLITVDPKQ---VHHQELMALVDTLKSGMVT 735 (2799)
T ss_pred hHHHHHHHHhccchhhHHHHhh-cCceEEEEeee--chHHHHHHHHHHHHHhccCccc---ccHHHHHHHHHHHHhccee
Confidence 3566778888889999999998 88999988883 3455666777777654433221 12233446677777631
Q ss_pred ---------CHHHHHHHHHHHHHhcccc-hhhhhhcccCcHHHHHHhhc
Q 044293 106 ---------SQETVKLASSLICSLAMLD-KNKARFGVAGTVQVLVKAVS 144 (236)
Q Consensus 106 ---------~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~ 144 (236)
..+.+....++++...... ..+..+++.++...|...|.
T Consensus 736 ~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLh 784 (2799)
T KOG1788|consen 736 RISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLH 784 (2799)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHH
Confidence 1244555677888776443 56677778888888777664
No 227
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=86.61 E-value=2.8 Score=31.67 Aligned_cols=133 Identities=11% Similarity=0.073 Sum_probs=67.9
Q ss_pred cccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCCChHH
Q 044293 91 METIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTL 170 (236)
Q Consensus 91 ~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~ 170 (236)
...++.|..+|+++.+.+++..+..+|..|-.-|-.+......+ .+.- .-...+....... +.+.... ..-+.
T Consensus 9 P~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~-~~~~--~~~~~~~~~~~~~---l~~~~~~-~~~ee 81 (160)
T PF11865_consen 9 PELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKS-LDSK--SSENSNDESTDIS---LPMMGIS-PSSEE 81 (160)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccccc-CCcc--ccccccccchhhH---HhhccCC-CchHH
Confidence 45788899999988679999999999999955543333321110 0100 0000111111111 1111111 12333
Q ss_pred HHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCCh-hhHHHHHhcCCcHHHHHHHhhCCcc
Q 044293 171 AVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFD-EGMIALTKTDQIVSLMVDVLKGRSM 232 (236)
Q Consensus 171 ~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~-~~~~~i~~~g~~i~~lv~~l~~~~~ 232 (236)
..-..++..|+..|++.+-......++.++.++.... .....+.. -++|.+++.+++.++
T Consensus 82 ~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~--~viP~~l~~i~~~~~ 142 (160)
T PF11865_consen 82 YYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLP--QVIPIFLRVIRTCPD 142 (160)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHH--HHhHHHHHHHHhCCH
Confidence 3344567778888877542333345555555554322 22244443 267888888876554
No 228
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=86.39 E-value=17 Score=29.87 Aligned_cols=136 Identities=13% Similarity=0.074 Sum_probs=84.8
Q ss_pred CcHHHHHhhccCCC----hHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccC---CHHHHHHHHHHHHHhccc
Q 044293 51 GAISTLLGLSKSSS----PIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSS---SQETVKLASSLICSLAML 123 (236)
Q Consensus 51 g~i~~Lv~lL~~~~----~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~---~~~~~~~a~~~L~~Ls~~ 123 (236)
+.+|.++.-+..++ ......++..|..+|... ..+.+..++.....+. ..+....++..|+.--..
T Consensus 111 a~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~-------~~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P 183 (262)
T PF14225_consen 111 ALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQ-------GLPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFFP 183 (262)
T ss_pred HHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhC-------CCccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCc
Confidence 45666666666655 123345667777777221 2334445555444432 345666666666643221
Q ss_pred chhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHH
Q 044293 124 DKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLL 203 (236)
Q Consensus 124 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l 203 (236)
+- +...+-.|+++|.++-+-.+..++..|..+-..-+.+.. .-.+.+.++++++++. .-..|+.+|.+.
T Consensus 184 ~~------~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~-~~~dlispllrlL~t~----~~~eAL~VLd~~ 252 (262)
T PF14225_consen 184 DH------EFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP-HGADLISPLLRLLQTD----LWMEALEVLDEI 252 (262)
T ss_pred hh------HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC-cchHHHHHHHHHhCCc----cHHHHHHHHHHH
Confidence 11 245677899999888778889999999888776544433 4566899999999764 335777777664
Q ss_pred c
Q 044293 204 A 204 (236)
Q Consensus 204 ~ 204 (236)
.
T Consensus 253 v 253 (262)
T PF14225_consen 253 V 253 (262)
T ss_pred H
Confidence 3
No 229
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=85.99 E-value=16 Score=35.20 Aligned_cols=121 Identities=10% Similarity=0.108 Sum_probs=62.6
Q ss_pred CCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhH------Hhhhcc
Q 044293 19 SDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQ------SLASME 92 (236)
Q Consensus 19 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~------~i~~~g 92 (236)
.++....-.+.+.|..|+.++ .+...|++. |||..|+..=+.. +.-.....+|+.+......-. ..+-..
T Consensus 364 ~~d~~l~~~~~k~~~~l~~h~-kfa~~fv~~-~gi~kll~vpr~s--~~~~g~s~cly~~~~~q~~mervc~~p~~v~~~ 439 (1516)
T KOG1832|consen 364 LDDSPLLPDVMKLICALAAHR-KFAAMFVER-RGILKLLAVPRVS--ETFYGLSSCLYTIGSLQGIMERVCALPLVVIHQ 439 (1516)
T ss_pred cccccccHHHHHHHHHHHHhh-HHHHHHHHh-hhhHHHhcCCCch--hhhhhHHHHHHHHhhhhhHHHHHhhccHHHHHH
Confidence 344445667888899998875 466777887 8898887753322 111222344555444332211 122234
Q ss_pred cHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhc
Q 044293 93 TIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVS 144 (236)
Q Consensus 93 ~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~ 144 (236)
.+..-++++.++ ....+.+++......-........+....+++.|+.++.
T Consensus 440 vv~~~~~l~~cs-~~~~~~~~~~ff~~~f~frail~~fd~~d~l~~l~~~~~ 490 (1516)
T KOG1832|consen 440 VVKLAIELLDCS-QDQARKNSALFFAAAFVFRAILDAFDAQDSLQKLLAILK 490 (1516)
T ss_pred HHHHHHHHHhcc-hhhccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 556667777765 344444444332211111222233334556666665554
No 230
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=85.98 E-value=11 Score=35.36 Aligned_cols=128 Identities=12% Similarity=0.081 Sum_probs=85.0
Q ss_pred CCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhcc-CCChHHHHHHHHHHHhhCCCCch-hHHhhhcccHHHH
Q 044293 20 DSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSK-SSSPIIRTLSLSILLNLSLNPDL-KQSLASMETIYRL 97 (236)
Q Consensus 20 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~~~-~~~i~~~g~i~~L 97 (236)
++++.|..|.-.|..+..-+ -+.+.++ .|.|+..+. +++|.+|.+|.-.|..+...=++ .+.. -..|
T Consensus 908 sd~~lq~aA~l~L~klMClS---~~fc~eh---lpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de~-----t~yL 976 (1128)
T COG5098 908 SDEELQVAAYLSLYKLMCLS---FEFCSEH---LPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADEH-----THYL 976 (1128)
T ss_pred CCHHHHHHHHHHHHHHHHHh---HHHHHHH---HHHHHHHHhhCCCcceeccceeeccccceehhhhhHHH-----HHHH
Confidence 68899999988888876532 2334444 899998887 88999999998888765432221 1111 1234
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhc
Q 044293 98 NWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQ 163 (236)
Q Consensus 98 ~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~ 163 (236)
..-|... +.++++.|..++.+|-.-. ++--.|-++.+...|.+++......|-..+..++.
T Consensus 977 yrrL~De-~~~V~rtclmti~fLilag----q~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~ 1037 (1128)
T COG5098 977 YRRLGDE-DADVRRTCLMTIHFLILAG----QLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAK 1037 (1128)
T ss_pred HHHhcch-hhHHHHHHHHHHHHHHHcc----ceeeccchhhhHhhccCCcchHHHHHHHHHHHHHh
Confidence 4445444 7899999999999886532 33335777888888888776655555444444443
No 231
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.26 E-value=48 Score=34.01 Aligned_cols=177 Identities=13% Similarity=0.088 Sum_probs=97.8
Q ss_pred hHHHhHHHHHHHHh----cCCCHHHHHHHHHHHHHHhcCC-hHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhh
Q 044293 4 PRVRETINNCVSRS----QSDSYEDQQKALQTLASITRVS-PQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNL 78 (236)
Q Consensus 4 ~~~~~~i~~lv~~L----~~~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l 78 (236)
+..++..+.||..| -++++.+|. |..-+++..-.+ ...-..... .+...|+.=+.+..=++|+.++.||..|
T Consensus 990 ~kl~p~l~kLIPrLyRY~yDP~~~Vq~-aM~sIW~~Li~D~k~~vd~y~n--eIl~eLL~~lt~kewRVReasclAL~dL 1066 (1702)
T KOG0915|consen 990 EKLEPYLKKLIPRLYRYQYDPDKKVQD-AMTSIWNALITDSKKVVDEYLN--EILDELLVNLTSKEWRVREASCLALADL 1066 (1702)
T ss_pred HhhhhHHHHhhHHHhhhccCCcHHHHH-HHHHHHHHhccChHHHHHHHHH--HHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence 34455555555555 478877776 555666654443 333333333 4677777777777778999999999988
Q ss_pred CCCCchhHHhhhcccHHHHHH-HHhccC--CHHHHH---HHHHHHHHhcccc---hh--hhhhcccCcHHHHH--HhhcC
Q 044293 79 SLNPDLKQSLASMETIYRLNW-IIQSSS--SQETVK---LASSLICSLAMLD---KN--KARFGVAGTVQVLV--KAVSA 145 (236)
Q Consensus 79 ~~~~~~~~~i~~~g~i~~L~~-lL~~~~--~~~~~~---~a~~~L~~Ls~~~---~~--~~~i~~~g~i~~Lv--~lL~~ 145 (236)
-...+.-+.. .-+|.+.. +++.-+ .+.+|+ .++.+|..++.-- .+ +..-.-..++|.|+ .++ +
T Consensus 1067 l~g~~~~~~~---e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gim-s 1142 (1702)
T KOG0915|consen 1067 LQGRPFDQVK---EKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIM-S 1142 (1702)
T ss_pred HcCCChHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcc-c
Confidence 7765542221 12233332 222211 123333 4666666665321 11 11100134455555 333 4
Q ss_pred CCcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCC
Q 044293 146 PSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGST 187 (236)
Q Consensus 146 ~~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~ 187 (236)
.-+.+++-++.++..|+.+...--.-.-...||.|+.....-
T Consensus 1143 ~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~l 1184 (1702)
T KOG0915|consen 1143 KVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSEL 1184 (1702)
T ss_pred chHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHcccc
Confidence 456788999999999997654422222346677777777654
No 232
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=84.70 E-value=2.6 Score=37.49 Aligned_cols=155 Identities=13% Similarity=0.066 Sum_probs=88.4
Q ss_pred CcHHHHHhhccCCChHHHHHHHHHHHhhCC-----CCchhHHhh--hcccHHHHHHHHhcc--CCHHHHHHHHHHHHHhc
Q 044293 51 GAISTLLGLSKSSSPIIRTLSLSILLNLSL-----NPDLKQSLA--SMETIYRLNWIIQSS--SSQETVKLASSLICSLA 121 (236)
Q Consensus 51 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~-----~~~~~~~i~--~~g~i~~L~~lL~~~--~~~~~~~~a~~~L~~Ls 121 (236)
+....+...|.+..-..|+++++.+.|++. -|..+..-- ..-.+..+++.-... ++..++.++..+|.|+.
T Consensus 433 ~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnll 512 (728)
T KOG4535|consen 433 DAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLL 512 (728)
T ss_pred HHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHH
Confidence 445555555555445668888888888643 222111111 111333333332221 15678889999999987
Q ss_pred ccchhhhhhc----ccCcHHHHH-HhhcCCCcHHHHHHHHHHHHHhcCCCChH-HHHH-hCcHHHHHHHhcCCChhhHHH
Q 044293 122 MLDKNKARFG----VAGTVQVLV-KAVSAPSNPAGHHLLSSLAELVQFHGNST-LAVR-AGAVSELIHLIGSTEAEDLAG 194 (236)
Q Consensus 122 ~~~~~~~~i~----~~g~i~~Lv-~lL~~~~~~~~~~a~~aL~~L~~~~~~~~-~~~~-~g~i~~lv~ll~~~~~~~~~~ 194 (236)
..-+.-...+ ..|.+..++ .....++.+++=++|-++.||-.++..+- .+-- .-+++.|..|+.+..+-.++.
T Consensus 513 Qvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi 592 (728)
T KOG4535|consen 513 QFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRI 592 (728)
T ss_pred HHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEee
Confidence 6432111111 123333333 22234567888999999999999876532 2222 346788888887654456777
Q ss_pred HHHHHHHHHcC
Q 044293 195 TSLAVLNLLAR 205 (236)
Q Consensus 195 ~a~~~L~~l~~ 205 (236)
+|+.+|..-..
T Consensus 593 ~AA~aL~vp~~ 603 (728)
T KOG4535|consen 593 RAAAALSVPGK 603 (728)
T ss_pred hhhhhhcCCCC
Confidence 88888765543
No 233
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=84.38 E-value=2 Score=30.06 Aligned_cols=39 Identities=26% Similarity=0.466 Sum_probs=33.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHH
Q 044293 27 KALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPII 67 (236)
Q Consensus 27 ~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~ 67 (236)
.....+..++.. |+....|++. |+++.|++||.+.+.++
T Consensus 65 ~~Ik~l~~La~~-P~LYp~lv~l-~~v~sL~~LL~HeN~DI 103 (108)
T PF08216_consen 65 EEIKKLSVLATA-PELYPELVEL-GAVPSLLGLLSHENTDI 103 (108)
T ss_pred HHHHHHHHccCC-hhHHHHHHHc-CCHHHHHHHHCCCCcce
Confidence 466777788775 8889999999 99999999999987665
No 234
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=84.18 E-value=21 Score=33.63 Aligned_cols=34 Identities=9% Similarity=-0.173 Sum_probs=15.2
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhcccchhhh
Q 044293 95 YRLNWIIQSSSSQETVKLASSLICSLAMLDKNKA 128 (236)
Q Consensus 95 ~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~ 128 (236)
+..+.+|..+-++-+|--++.+|.-.|....++.
T Consensus 591 ~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e 624 (929)
T KOG2062|consen 591 PSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE 624 (929)
T ss_pred hHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH
Confidence 3444444433244555555555554444443333
No 235
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=83.91 E-value=28 Score=32.33 Aligned_cols=157 Identities=17% Similarity=0.137 Sum_probs=92.9
Q ss_pred ChHHHHHHHHHHHhhCCCCchhHHhh----hcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHH
Q 044293 64 SPIIRTLSLSILLNLSLNPDLKQSLA----SMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVL 139 (236)
Q Consensus 64 ~~~~~~~a~~~L~~l~~~~~~~~~i~----~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L 139 (236)
..+.+.-|+.+|.-+..|+..-..+. ....+..++..+. + ++..+..+.++|.|+-.++.++..+... ...+
T Consensus 557 p~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~-~~an~ll~vR~L~N~f~~~~g~~~~~s~--~~~i 632 (745)
T KOG0301|consen 557 PVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-A-DPANQLLVVRCLANLFSNPAGRELFMSR--LESI 632 (745)
T ss_pred CHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-c-chhHHHHHHHHHHHhccCHHHHHHHHHH--HHHH
Confidence 45666777777777666655433333 2335566666655 4 5777888999999998887777666542 2222
Q ss_pred HHhh---cCCCcHHHHHHHHHH-HHHhc--CCCChHHHHHhCcHHHHHHHhcCC----ChhhHHHHHHHHHHHHcCChhh
Q 044293 140 VKAV---SAPSNPAGHHLLSSL-AELVQ--FHGNSTLAVRAGAVSELIHLIGST----EAEDLAGTSLAVLNLLARFDEG 209 (236)
Q Consensus 140 v~lL---~~~~~~~~~~a~~aL-~~L~~--~~~~~~~~~~~g~i~~lv~ll~~~----~~~~~~~~a~~~L~~l~~~~~~ 209 (236)
...+ .+.+..-...|..++ .|++. .+.+-+ .|+.+.+...+... ++-+..-..+-+|.+|+..+..
T Consensus 633 ~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~ 708 (745)
T KOG0301|consen 633 LDPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQ----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDAS 708 (745)
T ss_pred hhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHH
Confidence 2222 223322333333332 34443 333332 46666666665542 1122234566788889999988
Q ss_pred HHHHHhcCCcHHHHHHHhhC
Q 044293 210 MIALTKTDQIVSLMVDVLKG 229 (236)
Q Consensus 210 ~~~i~~~g~~i~~lv~~l~~ 229 (236)
..++.+.-. +..+.+-++.
T Consensus 709 ~~~~A~~~~-v~sia~~~~~ 727 (745)
T KOG0301|consen 709 VIQLAKNRS-VDSIAKKLKE 727 (745)
T ss_pred HHHHHHhcC-HHHHHHHHHH
Confidence 888888776 7888887764
No 236
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=83.83 E-value=18 Score=34.76 Aligned_cols=136 Identities=15% Similarity=0.072 Sum_probs=85.7
Q ss_pred CCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHH
Q 044293 19 SDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLN 98 (236)
Q Consensus 19 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~ 98 (236)
+.+-.+...++..|..++......-+.+.. +..|.+++-+...-+.+++.+..++-..+. ...-...++.+.
T Consensus 306 DaN~~v~~~aa~~l~~ia~~lr~~~~~~~~--~v~p~lld~lkekk~~l~d~l~~~~d~~~n------s~~l~~~~~~I~ 377 (815)
T KOG1820|consen 306 DANINVVMLAAQILELIAKKLRPLFRKYAK--NVFPSLLDRLKEKKSELRDALLKALDAILN------STPLSKMSEAIL 377 (815)
T ss_pred CcchhHHHHHHHHHHHHHHhcchhhHHHHH--hhcchHHHHhhhccHHHHHHHHHHHHHHHh------cccHHHHHHHHH
Confidence 445555566777777777664333333443 677888887777666666655555544333 111235677778
Q ss_pred HHHhccCCHHHHHHHHHHHHHhcc-cc-hhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhc
Q 044293 99 WIIQSSSSQETVKLASSLICSLAM-LD-KNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQ 163 (236)
Q Consensus 99 ~lL~~~~~~~~~~~a~~~L~~Ls~-~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~ 163 (236)
..++++ ++..+..+...+-.+.. .+ .+...-.-.+.+|.++.+..+.+.+++..|..++..+-.
T Consensus 378 e~lk~k-np~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 378 EALKGK-NPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK 443 (815)
T ss_pred HHhcCC-ChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence 888888 89998886666554433 22 111111125778888888888888999988888766543
No 237
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=82.99 E-value=4.9 Score=29.69 Aligned_cols=73 Identities=22% Similarity=0.199 Sum_probs=59.6
Q ss_pred CcHHHHHhhccCCChHHHHHHHHHHHhhCCCC--chhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhccc
Q 044293 51 GAISTLLGLSKSSSPIIRTLSLSILLNLSLNP--DLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAML 123 (236)
Q Consensus 51 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~--~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~ 123 (236)
.++..|-.-|.++++.++-.|+.+|-.|..+= .....+.+.+++..|++++....++.++..++..+..-+..
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 115 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALA 115 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHH
Confidence 56788888899999999999999888877762 34677888999999999998644789999999888877653
No 238
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=82.85 E-value=26 Score=33.35 Aligned_cols=188 Identities=10% Similarity=0.027 Sum_probs=96.8
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhH
Q 044293 7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQ 86 (236)
Q Consensus 7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~ 86 (236)
....|.++..+++..++++....+.+..+-..++......... ..+|.++.+-....-+++......+..++.... .
T Consensus 436 ~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~-slLp~i~el~~d~~wRvr~ail~~ip~la~q~~--~ 512 (759)
T KOG0211|consen 436 SELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSN-SLLPAIVELAEDLLWRVRLAILEYIPQLALQLG--V 512 (759)
T ss_pred cccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhh-hhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh--h
Confidence 3455666777788888888877765544332222222222333 567777776444334555555555555554333 1
Q ss_pred HhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCC
Q 044293 87 SLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHG 166 (236)
Q Consensus 87 ~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~ 166 (236)
.+.+.-.-+.+..-+.+- ..++++.|+..+..++..-..... ..-.++.++.+..+++...+...+.++..++.--.
T Consensus 513 ~~~~~~~~~l~~~~l~d~-v~~Ir~~aa~~l~~l~~~~G~~w~--~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g 589 (759)
T KOG0211|consen 513 EFFDEKLAELLRTWLPDH-VYSIREAAARNLPALVETFGSEWA--RLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLG 589 (759)
T ss_pred HHhhHHHHHHHHhhhhhh-HHHHHHHHHHHhHHHHHHhCcchh--HHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhc
Confidence 121111111111112222 468889999988888775542222 24557777777777655555555555544433111
Q ss_pred ChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHH
Q 044293 167 NSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLL 203 (236)
Q Consensus 167 ~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l 203 (236)
+.+.....+|.+.++..+.. +.++-++++.|.-+
T Consensus 590 --~ei~~~~Llp~~~~l~~D~v-anVR~nvak~L~~i 623 (759)
T KOG0211|consen 590 --QEITCEDLLPVFLDLVKDPV-ANVRINVAKHLPKI 623 (759)
T ss_pred --cHHHHHHHhHHHHHhccCCc-hhhhhhHHHHHHHH
Confidence 11112234466666666653 55555665555543
No 239
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=82.73 E-value=29 Score=29.49 Aligned_cols=157 Identities=14% Similarity=0.076 Sum_probs=108.1
Q ss_pred HHHHHhhccCCChHHHHHHHHHHHhhCCCCc--hhHHhh-hcc-cHHHHHHHHhccC----C--------HHHHHHHHHH
Q 044293 53 ISTLLGLSKSSSPIIRTLSLSILLNLSLNPD--LKQSLA-SME-TIYRLNWIIQSSS----S--------QETVKLASSL 116 (236)
Q Consensus 53 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~--~~~~i~-~~g-~i~~L~~lL~~~~----~--------~~~~~~a~~~ 116 (236)
++.+-.-|++..+.+...++..|..+..... ....+. .-+ -.+.+.+++.... + +++|.+....
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 6777777888888888899999999988433 344444 333 3445666664321 1 2788887777
Q ss_pred HHHhcc--cchhhhhhc-ccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhc-CC----CChHHHHHhCcHHHHHHHhcCCC
Q 044293 117 ICSLAM--LDKNKARFG-VAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQ-FH----GNSTLAVRAGAVSELIHLIGSTE 188 (236)
Q Consensus 117 L~~Ls~--~~~~~~~i~-~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~-~~----~~~~~~~~~g~i~~lv~ll~~~~ 188 (236)
+..+.. +...+..+. +.+.+..+.+.|..+++++....+.+|..-.. .+ ..|..+.....+..+..+....+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 665544 334555555 47889999999999888899999999975433 32 23445556678888999776653
Q ss_pred h---hhHHHHHHHHHHHHcCChhh
Q 044293 189 A---EDLAGTSLAVLNLLARFDEG 209 (236)
Q Consensus 189 ~---~~~~~~a~~~L~~l~~~~~~ 209 (236)
. ..+.+.+-..|..+|.++..
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~p~~ 241 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTDPKH 241 (330)
T ss_pred CcccchHHHHHHHHHHHHhcCCCc
Confidence 1 36788899999999987653
No 240
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=82.30 E-value=17 Score=26.70 Aligned_cols=73 Identities=14% Similarity=0.261 Sum_probs=55.7
Q ss_pred HHhHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcC-ChHHHHHHHhccCcHHH-HHhhccC---CChHHHHHHHHHHHhhC
Q 044293 6 VRETINNCVSRSQS-DSYEDQQKALQTLASITRV-SPQYRSLLAQTDGAIST-LLGLSKS---SSPIIRTLSLSILLNLS 79 (236)
Q Consensus 6 ~~~~i~~lv~~L~~-~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~~g~i~~-Lv~lL~~---~~~~~~~~a~~~L~~l~ 79 (236)
..+.+..+.+.|++ .++.++..|+..|-.+..+ +......+... +.+.. |+.+++. ....++..++..+...+
T Consensus 36 ~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask-~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~ 114 (141)
T cd03565 36 PKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKK-DFIKDVLVKLINPKNNPPTIVQEKVLALIQAWA 114 (141)
T ss_pred HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHH-HhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHH
Confidence 46788888888874 5888888898888888876 34567778776 89987 9999863 23478888888887654
No 241
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=81.88 E-value=18 Score=33.44 Aligned_cols=96 Identities=11% Similarity=0.097 Sum_probs=57.0
Q ss_pred hcccHHHHHHHHhc---cCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCC---CcHHHHHHHHHHHHHhc
Q 044293 90 SMETIYRLNWIIQS---SSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAP---SNPAGHHLLSSLAELVQ 163 (236)
Q Consensus 90 ~~g~i~~L~~lL~~---~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~---~~~~~~~a~~aL~~L~~ 163 (236)
....++.+...|.. ..+.+-+..++.+|.|+-. ...++.|..++... +..++..|+++|..+..
T Consensus 484 ~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~ 553 (618)
T PF01347_consen 484 IEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAK 553 (618)
T ss_dssp -GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGG
T ss_pred HHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhh
Confidence 34567777777762 2256777788899988854 34677888777765 44577788888876644
Q ss_pred CCCChHHHHHhCcHHHHHHHhcCC-ChhhHHHHHHHHHHH
Q 044293 164 FHGNSTLAVRAGAVSELIHLIGST-EAEDLAGTSLAVLNL 202 (236)
Q Consensus 164 ~~~~~~~~~~~g~i~~lv~ll~~~-~~~~~~~~a~~~L~~ 202 (236)
.... .+.+.++.++.+. ++.+++-.|.-+|..
T Consensus 554 ~~~~-------~v~~~l~~I~~n~~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 554 HCPE-------KVREILLPIFMNTTEDPEVRIAAYLILMR 586 (618)
T ss_dssp T-HH-------HHHHHHHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred cCcH-------HHHHHHHHHhcCCCCChhHHHHHHHHHHh
Confidence 3222 2336677777553 345665555544433
No 242
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.35 E-value=24 Score=33.42 Aligned_cols=68 Identities=18% Similarity=0.094 Sum_probs=48.7
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCC
Q 044293 8 ETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLN 81 (236)
Q Consensus 8 ~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~ 81 (236)
+..+.+=+.|++..+.+.-+|+.++..+...+. +.+. ..+..|--+++++.+.+|-.|.++|..+|..
T Consensus 245 ~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~---r~l~---pavs~Lq~flssp~~~lRfaAvRtLnkvAm~ 312 (865)
T KOG1078|consen 245 PLFPFLESCLRHKSEMVIYEAARAIVSLPNTNS---RELA---PAVSVLQLFLSSPKVALRFAAVRTLNKVAMK 312 (865)
T ss_pred hHHHHHHHHHhchhHHHHHHHHHHHhhccccCH---hhcc---hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHh
Confidence 344555555667778888889999988876532 2222 3577777778888888888899999887764
No 243
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=79.85 E-value=9.3 Score=28.29 Aligned_cols=91 Identities=15% Similarity=0.133 Sum_probs=66.8
Q ss_pred CcHHHHHhhccCCChHHHHHHHHHHHhhCCCCc--hhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhh
Q 044293 51 GAISTLLGLSKSSSPIIRTLSLSILLNLSLNPD--LKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKA 128 (236)
Q Consensus 51 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~--~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~ 128 (236)
.++..|..-|.+.++.++-.|+.+|-.|..+=. ....+.+.+++..|++++....+.+++..+...+...+..-.+..
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~~~ 116 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKNDP 116 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 467777788889999999999999988877643 467788899999999999884378999999999887765432222
Q ss_pred hhcccCcHHHHHHhhc
Q 044293 129 RFGVAGTVQVLVKAVS 144 (236)
Q Consensus 129 ~i~~~g~i~~Lv~lL~ 144 (236)
+.+.+..+-+.|.
T Consensus 117 ---~l~~i~~~y~~L~ 129 (144)
T cd03568 117 ---SLSLMSDLYKKLK 129 (144)
T ss_pred ---ccHHHHHHHHHHH
Confidence 1233444444444
No 244
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=79.82 E-value=44 Score=30.77 Aligned_cols=99 Identities=10% Similarity=0.065 Sum_probs=59.8
Q ss_pred CcHHHHHhh-ccCCChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhh
Q 044293 51 GAISTLLGL-SKSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKAR 129 (236)
Q Consensus 51 g~i~~Lv~l-L~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~ 129 (236)
|+|..|+.. .+..+.++++.|.-+|..+|.++. +.++..+.+|..+.+.-++--.+.+|.-.|.....+
T Consensus 551 ~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~--------~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~-- 620 (926)
T COG5116 551 GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR--------DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK-- 620 (926)
T ss_pred hhHhhhheeecccCchHHHHHHHHheeeeEecCc--------chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH--
Confidence 455555555 455566777777777776665443 355666677765546777776677776555444322
Q ss_pred hcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhc
Q 044293 130 FGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQ 163 (236)
Q Consensus 130 i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~ 163 (236)
-++..|-.++.+.++-+++.|+.++.-+..
T Consensus 621 ----~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~ 650 (926)
T COG5116 621 ----VATDILEALMYDTNDFVRQSAMIAVGMILM 650 (926)
T ss_pred ----HHHHHHHHHhhCcHHHHHHHHHHHHHHHHh
Confidence 234445555556666777777777765543
No 245
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=79.61 E-value=52 Score=30.45 Aligned_cols=121 Identities=12% Similarity=0.136 Sum_probs=77.3
Q ss_pred hhCCCCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHH
Q 044293 77 NLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLS 156 (236)
Q Consensus 77 ~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~ 156 (236)
-+..+|++ ..++ .|.+..+++-+.+. +..++.+++..|.-++..-..-....-+|.+..|.+=+-+..+.++..|+.
T Consensus 78 ~~~~dpeg-~~~V-~~~~~h~lRg~esk-dk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~ 154 (885)
T COG5218 78 DMPDDPEG-EELV-AGTFYHLLRGTESK-DKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVK 154 (885)
T ss_pred cCCCChhh-hHHH-HHHHHHHHhcccCc-chhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 34445555 3332 45666666666666 788999999998888765433334444788888888777777789999999
Q ss_pred HHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCCh
Q 044293 157 SLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFD 207 (236)
Q Consensus 157 aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~ 207 (236)
+|..+-....|-+.. ....++.+++..++.+++.. +|.|+..++
T Consensus 155 ~L~~~Qe~~~neen~----~~n~l~~~vqnDPS~EVRr~---allni~vdn 198 (885)
T COG5218 155 VLCYYQEMELNEENR----IVNLLKDIVQNDPSDEVRRL---ALLNISVDN 198 (885)
T ss_pred HHHHHHhccCChHHH----HHHHHHHHHhcCcHHHHHHH---HHHHeeeCC
Confidence 998776543332221 22467777766545667665 445555443
No 246
>PF04064 DUF384: Domain of unknown function (DUF384); InterPro: IPR007206 This is a protein of unknown function. It is found C-terminal to another domain of unknown function (IPR007205 from INTERPRO).
Probab=79.59 E-value=4.4 Score=24.97 Aligned_cols=50 Identities=18% Similarity=0.137 Sum_probs=36.5
Q ss_pred HHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCC
Q 044293 157 SLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARF 206 (236)
Q Consensus 157 aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~ 206 (236)
+|.-||.+..+|+.+.+.|+-|.+=.+-...+++++.+.+=.+...|..+
T Consensus 1 ~LllL~~T~~GR~~lR~~~vY~IlRe~h~~E~d~~V~e~~erlV~iLird 50 (58)
T PF04064_consen 1 ALLLLCATREGREYLREKGVYPILRELHKWEEDEEVQEACERLVQILIRD 50 (58)
T ss_pred CHhHHhccHHHHHHHHHcCchHHHHHHHhccCCHHHHHHHHHHHHHHhcC
Confidence 46778999999999999998777766666554577777766666555543
No 247
>PRK14707 hypothetical protein; Provisional
Probab=78.36 E-value=1e+02 Score=33.15 Aligned_cols=215 Identities=18% Similarity=0.139 Sum_probs=110.2
Q ss_pred HHHHHHHHh-cCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhc-cCCChHHHHHHHHHHH-hhCCCCchh
Q 044293 9 TINNCVSRS-QSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLS-KSSSPIIRTLSLSILL-NLSLNPDLK 85 (236)
Q Consensus 9 ~i~~lv~~L-~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~~a~~~L~-~l~~~~~~~ 85 (236)
.|-.++.-+ |=++...-+.++..|.....+....+..+-.. | +-..++-| +.++.....+++.+|. .++.++.-+
T Consensus 206 ~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~~~~~q-~-va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~ 283 (2710)
T PRK14707 206 GVATVLNALCKWPDTPDCGNAVSALAERLADESRLRNELKPQ-E-LGNALNALSKWADTPVCAAAASALAERLVDDPGLR 283 (2710)
T ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHHHHhCChH-H-HHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHH
Confidence 344444444 32333344445566654444445555555443 4 44444444 4555555566666666 566554445
Q ss_pred HHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcC-CCcHHHHHHHHHH-HHHhc
Q 044293 86 QSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSA-PSNPAGHHLLSSL-AELVQ 163 (236)
Q Consensus 86 ~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~aL-~~L~~ 163 (236)
+.+...+.-..|-.+=+-.+....+..|..+-..|..+.+-+..+-..+ +.-.+.-|.+ ++..+...|+.+| ..|+.
T Consensus 284 ~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~~~~~-~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~ 362 (2710)
T PRK14707 284 KALDPINVTQALNALSKWADLPVCAEAAIALAERLADDPELCKALNARG-LSTALNALSKWPDNPVCAAAVSALAERLVA 362 (2710)
T ss_pred HhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhccchHH-HHHHHHHhhcCCCchhHHHHHHHHHHHhcc
Confidence 5554332222222232223123333344444447777666565554333 4444455544 3444445555555 55666
Q ss_pred CCCChHHHHHhCcHHHHHHHh-cCCChhhHHHHHHHHHH-HHcCChhhHHHHHhcCCcHHHHHHHhhCC
Q 044293 164 FHGNSTLAVRAGAVSELIHLI-GSTEAEDLAGTSLAVLN-LLARFDEGMIALTKTDQIVSLMVDVLKGR 230 (236)
Q Consensus 164 ~~~~~~~~~~~g~i~~lv~ll-~~~~~~~~~~~a~~~L~-~l~~~~~~~~~i~~~g~~i~~lv~~l~~~ 230 (236)
+++-++.+--.|+ ...+.-+ +.++ ......+...|. .+..+++-++.+--.| +..+++-|..|
T Consensus 363 d~~l~~~l~~q~~-a~~lNalsKWp~-~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~--van~lnalsKW 427 (2710)
T PRK14707 363 DPELRKDLEPQGV-SSVLNALSKWPD-TPVCAAAASALAEHVVDDLELRKGLDPQG--VSNALNALAKW 427 (2710)
T ss_pred CHhhhcccchhHH-HHHHhhhhcCCC-chHHHHHHHHHHHHhccChhhhhhcchhh--HHHHHHHhhcC
Confidence 6666666643444 4444444 4454 344455555555 5777888888887664 46666666554
No 248
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=78.25 E-value=43 Score=31.99 Aligned_cols=62 Identities=13% Similarity=0.203 Sum_probs=40.5
Q ss_pred HhhcCCCcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC
Q 044293 141 KAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR 205 (236)
Q Consensus 141 ~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~ 205 (236)
++.+..++.++..++.=+++++..-.. ..+..+.+|.+.++..+.. ..+++.|...+.++..
T Consensus 244 ~lc~d~~~~Vr~~~a~~l~~~a~~~~~--~~~~s~v~~~~~~L~~Ddq-dsVr~~a~~~~~~l~~ 305 (759)
T KOG0211|consen 244 SLCQDDTPMVRRAVASNLGNIAKVLES--EIVKSEVLPTLIQLLRDDQ-DSVREAAVESLVSLLD 305 (759)
T ss_pred hhccccchhhHHHHHhhhHHHHHHHHH--HHHHhhccHHHhhhhhcch-hhHHHHHHHHHHHHHH
Confidence 333444555666666666666653332 5566788999999998863 4677777777776653
No 249
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=77.54 E-value=21 Score=25.89 Aligned_cols=74 Identities=20% Similarity=0.142 Sum_probs=58.4
Q ss_pred CcHHHHHhhccCCChHHHHHHHHHHHhhCCCCc--hhHHhhhcccHHHHHHHHhc--cCCHHHHHHHHHHHHHhcccc
Q 044293 51 GAISTLLGLSKSSSPIIRTLSLSILLNLSLNPD--LKQSLASMETIYRLNWIIQS--SSSQETVKLASSLICSLAMLD 124 (236)
Q Consensus 51 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~--~~~~i~~~g~i~~L~~lL~~--~~~~~~~~~a~~~L~~Ls~~~ 124 (236)
.++..|-..|.++++.++-.|+.+|-.|..+-. ....+....++..|++++.. ..+.+++..+..++...+..-
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f 114 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESF 114 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 457777788889999999999999888877643 36677777888889999976 337899999999888776543
No 250
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=77.18 E-value=36 Score=32.28 Aligned_cols=137 Identities=12% Similarity=0.129 Sum_probs=78.6
Q ss_pred hHHHhHHHHHHHHhc-C----CC---HHHHHHHHHHHHHHhc---CChHHHHHHHhccCcHHHHHhhccCCChHHHHHHH
Q 044293 4 PRVRETINNCVSRSQ-S----DS---YEDQQKALQTLASITR---VSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSL 72 (236)
Q Consensus 4 ~~~~~~i~~lv~~L~-~----~~---~~~~~~a~~~L~~l~~---~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~ 72 (236)
+..++.++.+++-|. + ++ +.-...|++.+.++.. .....+..+ +. =+++.++..++++.--++..|+
T Consensus 404 ~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~m-e~-fiv~hv~P~f~s~ygfL~Srac 481 (970)
T COG5656 404 ETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVM-EY-FIVNHVIPAFRSNYGFLKSRAC 481 (970)
T ss_pred hhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHH-HH-HHHHHhhHhhcCcccchHHHHH
Confidence 446888999999992 1 12 2222345555554433 222233333 33 4566666677777778888899
Q ss_pred HHHHhhCCCCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcc--cCcHHHHHHhhcC
Q 044293 73 SILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGV--AGTVQVLVKAVSA 145 (236)
Q Consensus 73 ~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~--~g~i~~Lv~lL~~ 145 (236)
..+..++. +-+..-.-..+.+.....+++. +.-++..|+-+|.-+-.++..-..+.+ .+.++.|+++-+.
T Consensus 482 e~is~~ee--Dfkd~~ill~aye~t~ncl~nn-~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~ 553 (970)
T COG5656 482 EFISTIEE--DFKDNGILLEAYENTHNCLKNN-HLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNT 553 (970)
T ss_pred HHHHHHHH--hcccchHHHHHHHHHHHHHhcC-CcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhccc
Confidence 98887733 2233333334555666777776 677777888887766655533333322 4555555555444
No 251
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=76.91 E-value=18 Score=31.39 Aligned_cols=129 Identities=13% Similarity=0.043 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHhc-cCcHHHHHhhc---cCCChHHHHHHHHHHHhhCCCCch-hHHhhh------
Q 044293 22 YEDQQKALQTLASITRVSPQYRSLLAQT-DGAISTLLGLS---KSSSPIIRTLSLSILLNLSLNPDL-KQSLAS------ 90 (236)
Q Consensus 22 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~-~g~i~~Lv~lL---~~~~~~~~~~a~~~L~~l~~~~~~-~~~i~~------ 90 (236)
...|+.|...|+.++...+ +.+.+. .+.+..++.-. .+.+..-+..|+..+..++..... +..+.+
T Consensus 225 ~TrR~AA~dfl~~L~~~~~---~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~ 301 (370)
T PF08506_consen 225 DTRRRAACDFLRSLCKKFE---KQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVD 301 (370)
T ss_dssp -SHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-
T ss_pred CCcHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCccccccccc
Confidence 4467778888999986522 222211 02233332211 123556677788888888776543 222221
Q ss_pred ------cccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHH
Q 044293 91 ------METIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSL 158 (236)
Q Consensus 91 ------~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL 158 (236)
.-.+|-|. -..+..+-++..|++.+...-..- .+.++ .+.+|.++..|.+++..+...|+.|+
T Consensus 302 v~~Ff~~~v~peL~--~~~~~~piLka~aik~~~~Fr~~l-~~~~l--~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 302 VVDFFSQHVLPELQ--PDVNSHPILKADAIKFLYTFRNQL-PKEQL--LQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHTCHHHH---SS-S-HHHHHHHHHHHHHHGGGS--HHHH--HHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHHhHHHhc--ccCCCCcchHHHHHHHHHHHHhhC-CHHHH--HHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 11222221 011114556666666666554322 23333 46899999999999988888887664
No 252
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=75.65 E-value=23 Score=24.34 Aligned_cols=67 Identities=18% Similarity=0.199 Sum_probs=47.6
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHH
Q 044293 7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSIL 75 (236)
Q Consensus 7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L 75 (236)
+..+..|+.-+..+....+..++..|..++.+ +.....+.+. |+++.|-++=+..++..+...-.++
T Consensus 29 ~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~-~~a~~~l~~i-G~~~fL~klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 29 RLLLKQLLEWFNFPPVPMKEEVLALLLRLLKS-PYAAQILRDI-GAVRFLSKLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHhC-cHHHHHHHHc-cHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34555666666677767888899999999887 5567778888 9999877766555666655544444
No 253
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=75.61 E-value=39 Score=27.93 Aligned_cols=71 Identities=20% Similarity=0.126 Sum_probs=46.0
Q ss_pred CcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhH--HhhhcccHHHHHHHHhcc-----------CCHHHHHHHHHHH
Q 044293 51 GAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQ--SLASMETIYRLNWIIQSS-----------SSQETVKLASSLI 117 (236)
Q Consensus 51 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~--~i~~~g~i~~L~~lL~~~-----------~~~~~~~~a~~~L 117 (236)
=++|.++.++++.+++++..++.+|.++-.+-.... .+...|..+.+-+.+... ++..+...+-.+|
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 478999999999899999999999998877544322 344566555555544321 1234445555565
Q ss_pred HHhc
Q 044293 118 CSLA 121 (236)
Q Consensus 118 ~~Ls 121 (236)
..|.
T Consensus 199 ~~L~ 202 (282)
T PF10521_consen 199 LSLL 202 (282)
T ss_pred HHHH
Confidence 5553
No 254
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=75.56 E-value=27 Score=34.79 Aligned_cols=150 Identities=11% Similarity=0.046 Sum_probs=91.6
Q ss_pred HHHhHHHHHHHHh-cCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCc
Q 044293 5 RVRETINNCVSRS-QSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPD 83 (236)
Q Consensus 5 ~~~~~i~~lv~~L-~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~ 83 (236)
++..+|+.++.-| ..+++-+++..++.|..||.- -.|+ ...+=.++.|+-+|+..|..+|-. ..-.++...-
T Consensus 574 ~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~F--FGk~--ksND~iLshLiTfLNDkDw~LR~a---FfdsI~gvsi 646 (1431)
T KOG1240|consen 574 ALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVF--FGKE--KSNDVILSHLITFLNDKDWRLRGA---FFDSIVGVSI 646 (1431)
T ss_pred HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH--hhhc--ccccchHHHHHHHhcCccHHHHHH---HHhhccceEE
Confidence 3456677776555 445556677666666666642 1111 111135667777888877766632 2223332221
Q ss_pred h-hHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHh
Q 044293 84 L-KQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELV 162 (236)
Q Consensus 84 ~-~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~ 162 (236)
. ...-++...+|.|.+-|..+ .+-+...|+.+|.-|+...-.++..+ ...++...-+|..+|.=++..++..+....
T Consensus 647 ~VG~rs~seyllPLl~Q~ltD~-EE~Viv~aL~~ls~Lik~~ll~K~~v-~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~ 724 (1431)
T KOG1240|consen 647 FVGWRSVSEYLLPLLQQGLTDG-EEAVIVSALGSLSILIKLGLLRKPAV-KDILQDVLPLLCHPNLWIRRAVLGIIAAIA 724 (1431)
T ss_pred EEeeeeHHHHHHHHHHHhccCc-chhhHHHHHHHHHHHHHhcccchHHH-HHHHHhhhhheeCchHHHHHHHHHHHHHHH
Confidence 1 22224667889999999887 67788899999888887664333322 245555566777888778888888887665
Q ss_pred c
Q 044293 163 Q 163 (236)
Q Consensus 163 ~ 163 (236)
.
T Consensus 725 ~ 725 (1431)
T KOG1240|consen 725 R 725 (1431)
T ss_pred h
Confidence 4
No 255
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=74.98 E-value=5.8 Score=38.00 Aligned_cols=52 Identities=27% Similarity=0.388 Sum_probs=43.0
Q ss_pred HHHHHHHhccCcHHHHHhhccCCCh-----HHHHHHHHHHHhhCCCCchhHHhhhccc
Q 044293 41 QYRSLLAQTDGAISTLLGLSKSSSP-----IIRTLSLSILLNLSLNPDLKQSLASMET 93 (236)
Q Consensus 41 ~~~~~i~~~~g~i~~Lv~lL~~~~~-----~~~~~a~~~L~~l~~~~~~~~~i~~~g~ 93 (236)
..+..+... +||..|++||+...| .+|..|+.+|.-|+.++..|+.+.+...
T Consensus 730 ~mw~~Vr~n-dGIkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~tVrQIltKLpL 786 (1516)
T KOG1832|consen 730 QMWEAVRGN-DGIKILLKLLQYKNPPTTADCIRALACRVLLGLARDDTVRQILTKLPL 786 (1516)
T ss_pred HHHHHHhcC-ccHHHHHHHHhccCCCCcHHHHHHHHHHHHhccccCcHHHHHHHhCcc
Confidence 456777777 999999999987654 6788999999999999999998876543
No 256
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=74.56 E-value=18 Score=27.90 Aligned_cols=72 Identities=25% Similarity=0.274 Sum_probs=56.9
Q ss_pred chHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCC
Q 044293 3 APRVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSL 80 (236)
Q Consensus 3 ~~~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~ 80 (236)
.-=++..++.+++..-+++..++..|+..+......+--| . . -.+|.|+-+..++++.++..|...+..+..
T Consensus 3 s~l~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvn-P--~---~cvp~lIAL~ts~~~~ir~~A~~~l~~l~e 74 (187)
T PF12830_consen 3 SALVQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVN-P--K---QCVPTLIALETSPNPSIRSRAYQLLKELHE 74 (187)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCC-h--H---HHHhHhhhhhCCCChHHHHHHHHHHHHHHH
Confidence 3345778888999888999999999999998877653211 1 1 369999999999999999999999988754
No 257
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=73.67 E-value=11 Score=26.76 Aligned_cols=40 Identities=20% Similarity=0.150 Sum_probs=33.4
Q ss_pred cHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCCChHHHHHh
Q 044293 135 TVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRA 174 (236)
Q Consensus 135 ~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~ 174 (236)
+|+.|++-|.++++.+...|+..|...|..+..-..++..
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~~ 48 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVSL 48 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHHc
Confidence 5899999999999999999999999999988655555543
No 258
>PF15573 Imm27: Immunity protein 27
Probab=73.57 E-value=4.3 Score=32.17 Aligned_cols=35 Identities=20% Similarity=0.218 Sum_probs=29.4
Q ss_pred HHHHHHHhcCCChhhHHHHHHHHHHHHcCChhhHH
Q 044293 177 VSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGMI 211 (236)
Q Consensus 177 i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~ 211 (236)
=+.|++||+...+..+...|+++++.+|.+++-|.
T Consensus 48 K~LLiqLMN~TkDE~vLNLCiRlFcSV~THdDL~~ 82 (259)
T PF15573_consen 48 KNLLIQLMNQTKDEAVLNLCIRLFCSVATHDDLRD 82 (259)
T ss_pred hHHHHHHHhcchhHHHHHHHHHHHHhhcchHhhhc
Confidence 35699999887667788999999999999987654
No 259
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=73.40 E-value=51 Score=27.19 Aligned_cols=61 Identities=16% Similarity=0.273 Sum_probs=42.9
Q ss_pred cCcHHHHHHhhcC--CCcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHc
Q 044293 133 AGTVQVLVKAVSA--PSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLA 204 (236)
Q Consensus 133 ~g~i~~Lv~lL~~--~~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~ 204 (236)
.-+||.|.+.|.. .++.++..|+.+|..++. ..+++.|.+.+.+.+ +-+.+.|.-+|..+-
T Consensus 217 ~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~----------e~~~~vL~e~~~D~~-~vv~esc~valdm~e 279 (289)
T KOG0567|consen 217 PAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD----------EDCVEVLKEYLGDEE-RVVRESCEVALDMLE 279 (289)
T ss_pred hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC----------HHHHHHHHHHcCCcH-HHHHHHHHHHHHHHH
Confidence 5668888888865 466788888888876654 456677788887763 566777777776543
No 260
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=73.36 E-value=28 Score=25.06 Aligned_cols=106 Identities=14% Similarity=0.096 Sum_probs=64.1
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC---------h----HHHHHHHhc-cCcHHHHHhhccCCC----hHHH
Q 044293 7 RETINNCVSRSQSDSYEDQQKALQTLASITRVS---------P----QYRSLLAQT-DGAISTLLGLSKSSS----PIIR 68 (236)
Q Consensus 7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~---------~----~~~~~i~~~-~g~i~~Lv~lL~~~~----~~~~ 68 (236)
++.++.+++.+++ ++......+..|..+..+- . +.++.+.+. +.+++.+.+.+.... .+..
T Consensus 25 p~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~~i~~~l~~~l~~~~~~~~~~~~ 103 (148)
T PF08389_consen 25 PDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSPDILEILSQILSQSSSEANEELV 103 (148)
T ss_dssp TTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHCCHHHHH
T ss_pred chHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHH
Confidence 5678888888876 4555555666666554331 0 112223222 234444445554332 6778
Q ss_pred HHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHH
Q 044293 69 TLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLI 117 (236)
Q Consensus 69 ~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L 117 (236)
..++.++......-+ -..+.+.+.++.+..+|.++ +.+..|+.+|
T Consensus 104 ~~~L~~l~s~i~~~~-~~~i~~~~~l~~~~~~l~~~---~~~~~A~~cl 148 (148)
T PF08389_consen 104 KAALKCLKSWISWIP-IELIINSNLLNLIFQLLQSP---ELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHTTTS--HHHHHSSSHHHHHHHHTTSC---CCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-HHHhccHHHHHHHHHHcCCH---HHHHHHHHhC
Confidence 888899988776322 35555677999999999644 5577776654
No 261
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=73.07 E-value=15 Score=27.08 Aligned_cols=72 Identities=14% Similarity=0.104 Sum_probs=56.1
Q ss_pred CcHHHHHhhccCCChHHHHHHHHHHHhhCCCC--chhHHhhhcccHHHHHHHHhc---c--CCHHHHHHHHHHHHHhcc
Q 044293 51 GAISTLLGLSKSSSPIIRTLSLSILLNLSLNP--DLKQSLASMETIYRLNWIIQS---S--SSQETVKLASSLICSLAM 122 (236)
Q Consensus 51 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~--~~~~~i~~~g~i~~L~~lL~~---~--~~~~~~~~a~~~L~~Ls~ 122 (236)
.++..+...|+++++.++-.|+.+|-.|..+= .....|.+.+++.-+++++.. + .+..++...+..+..-+.
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 46777888899999999988998888776653 346788889999999999964 1 267888888877776543
No 262
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=72.12 E-value=51 Score=31.59 Aligned_cols=175 Identities=13% Similarity=0.194 Sum_probs=83.3
Q ss_pred CcHHHHHhhccCCChHHHHHHHHHHHhhCC-CCchhHHhhhcccHHH-----HHHHH---hccCCHHHHHHHHHHHHHh-
Q 044293 51 GAISTLLGLSKSSSPIIRTLSLSILLNLSL-NPDLKQSLASMETIYR-----LNWII---QSSSSQETVKLASSLICSL- 120 (236)
Q Consensus 51 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~-----L~~lL---~~~~~~~~~~~a~~~L~~L- 120 (236)
..+|.++.+|..+...+-.-|+.++-.+-. .+.+...+...+-+++ +..++ +.+.. .--+....++...
T Consensus 498 ~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~-~EneylmKaImRii 576 (960)
T KOG1992|consen 498 ALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGK-AENEYLMKAIMRII 576 (960)
T ss_pred HHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcc-cccHHHHHHHHHHH
Confidence 458899999988877777777777664433 3333333333333332 22222 22211 1222344444432
Q ss_pred cccchhhhhhcccCcHHHHHHhh----cCCC-cHHHHHHHHHH----HHHhcCCCChHHHHHhCcHHHHHHHhcCCChhh
Q 044293 121 AMLDKNKARFGVAGTVQVLVKAV----SAPS-NPAGHHLLSSL----AELVQFHGNSTLAVRAGAVSELIHLIGSTEAED 191 (236)
Q Consensus 121 s~~~~~~~~i~~~g~i~~Lv~lL----~~~~-~~~~~~a~~aL----~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~ 191 (236)
...++.-.... .-.++.|.+++ +.++ |....+-..++ ...|......-.-.+...+|.+-..|..+ -.+
T Consensus 577 ~i~~~~i~p~~-~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eD-I~E 654 (960)
T KOG1992|consen 577 SILQSAIIPHA-PELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSED-IQE 654 (960)
T ss_pred HhCHHhhhhhh-hHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 22222111111 12233333333 3343 33333333333 33333333333334567778777777653 344
Q ss_pred HHHHHHHHHHHHcCChhh--------------HHHHHhcCCcHHHHHHHhh
Q 044293 192 LAGTSLAVLNLLARFDEG--------------MIALTKTDQIVSLMVDVLK 228 (236)
Q Consensus 192 ~~~~a~~~L~~l~~~~~~--------------~~~i~~~g~~i~~lv~~l~ 228 (236)
..-.+..+|..+..+..+ ...+|+..|.+|.++++++
T Consensus 655 fiPYvfQlla~lve~~~~~ip~~~~~l~~~lLsp~lW~r~gNipalvrLl~ 705 (960)
T KOG1992|consen 655 FIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLLSPNLWKRSGNIPALVRLLQ 705 (960)
T ss_pred HHHHHHHHHHHHHHhcCCCCchhHHHHHHHhcCHHHHhhcCCcHHHHHHHH
Confidence 444555555554332221 3446665666899999875
No 263
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=71.98 E-value=31 Score=24.21 Aligned_cols=41 Identities=15% Similarity=0.215 Sum_probs=34.3
Q ss_pred HHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccCCHHHH
Q 044293 69 TLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETV 110 (236)
Q Consensus 69 ~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~ 110 (236)
...+..+..++..|+-=..+++.|+++.|+.+|.+. +.++.
T Consensus 64 d~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~He-N~DIa 104 (108)
T PF08216_consen 64 DEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHE-NTDIA 104 (108)
T ss_pred HHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCC-Cccee
Confidence 456678889999998778888999999999999988 66554
No 264
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=71.78 E-value=81 Score=29.58 Aligned_cols=72 Identities=13% Similarity=-0.007 Sum_probs=52.1
Q ss_pred hhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhc
Q 044293 89 ASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQ 163 (236)
Q Consensus 89 ~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~ 163 (236)
...+++|.|+++++.. |..+|-..+.-+-+.... --.++.+.-.+|.+..-+.+.|+..++.++.++..|+.
T Consensus 327 yq~~i~p~l~kLF~~~-Dr~iR~~LL~~i~~~i~~--Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~ 398 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSP-DRQIRLLLLQYIEKYIDH--LTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAP 398 (690)
T ss_pred cccchhhhHHHHhcCc-chHHHHHHHHhHHHHhhh--cCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHh
Confidence 4567899999999987 777775554444433322 22344456778888888888898999999999888776
No 265
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=71.36 E-value=20 Score=26.06 Aligned_cols=73 Identities=16% Similarity=0.100 Sum_probs=55.4
Q ss_pred cCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCC--CChHHHHHhCcHHHHHHHhcCCC-hhhHHHHHHHHHHHHcC
Q 044293 133 AGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFH--GNSTLAVRAGAVSELIHLIGSTE-AEDLAGTSLAVLNLLAR 205 (236)
Q Consensus 133 ~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~--~~~~~~~~~g~i~~lv~ll~~~~-~~~~~~~a~~~L~~l~~ 205 (236)
..++..|-+-|.++++.+...|+..|-.+..+. .....+...+.+..|+.++.... .+.+++.++.++..-+.
T Consensus 36 k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 36 KDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 466788888888999999999988887777753 34556667888999999998753 23488888888876543
No 266
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=70.82 E-value=33 Score=29.17 Aligned_cols=65 Identities=14% Similarity=0.068 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhcccchhhhhhcccC--cHHHHHHhhcCCC---cHHHHHHHHHHHHHhcCCCChHHHHH
Q 044293 109 TVKLASSLICSLAMLDKNKARFGVAG--TVQVLVKAVSAPS---NPAGHHLLSSLAELVQFHGNSTLAVR 173 (236)
Q Consensus 109 ~~~~a~~~L~~Ls~~~~~~~~i~~~g--~i~~Lv~lL~~~~---~~~~~~a~~aL~~L~~~~~~~~~~~~ 173 (236)
++-.|...+.++.........+...+ ++..|+++++..+ ..++..|+.+|..++........++.
T Consensus 238 iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~ 307 (329)
T PF06012_consen 238 IRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLR 307 (329)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 34456666666666666677777655 9999999998753 35778899999999986665555443
No 267
>PRK14707 hypothetical protein; Provisional
Probab=70.60 E-value=1.6e+02 Score=31.83 Aligned_cols=212 Identities=18% Similarity=0.143 Sum_probs=107.8
Q ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhc-cCCChHHHHHHHHHHH-hhCCCCchhH
Q 044293 10 INNCVSRS-QSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLS-KSSSPIIRTLSLSILL-NLSLNPDLKQ 86 (236)
Q Consensus 10 i~~lv~~L-~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~~a~~~L~-~l~~~~~~~~ 86 (236)
+-..+.-| |=++..+-..++..|..-...+...+..+-.. + +...++-| ++++..+...|+..|. .|..++.-+.
T Consensus 249 va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~~q-~-vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~ 326 (2710)
T PRK14707 249 LGNALNALSKWADTPVCAAAASALAERLVDDPGLRKALDPI-N-VTQALNALSKWADLPVCAEAAIALAERLADDPELCK 326 (2710)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHhcCHH-H-HHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhh
Confidence 33333333 44555566666666654333445556666544 3 33344333 3555555555555554 5666555554
Q ss_pred HhhhcccHHHHHHHHhc-cCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcC-CCcHHHHHHHHHH-HHHhc
Q 044293 87 SLASMETIYRLNWIIQS-SSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSA-PSNPAGHHLLSSL-AELVQ 163 (236)
Q Consensus 87 ~i~~~g~i~~L~~lL~~-~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~aL-~~L~~ 163 (236)
.+- .-.+...+.-|.. .++.+....|...-..++.+++-+..+...| +...+.-+.+ ++..+...++.+| ..+..
T Consensus 327 ~~~-~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q~-~a~~lNalsKWp~~~~c~~aa~~LA~~l~~ 404 (2710)
T PRK14707 327 ALN-ARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEPQG-VSSVLNALSKWPDTPVCAAAASALAEHVVD 404 (2710)
T ss_pred ccc-hHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccchhH-HHHHHhhhhcCCCchHHHHHHHHHHHHhcc
Confidence 443 3334444444432 2244555555444457888887777665444 4555555554 3445555566666 34555
Q ss_pred CCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHH-HHcCChhhHHHHHhcCCcHHHHHHHhh
Q 044293 164 FHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLN-LLARFDEGMIALTKTDQIVSLMVDVLK 228 (236)
Q Consensus 164 ~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~-~l~~~~~~~~~i~~~g~~i~~lv~~l~ 228 (236)
+.+-++.+--.|+-..|=.+-+..+ ..+.-.++..|. .++.+.+-++.+--.+ |...++.+.
T Consensus 405 d~~l~~~~~~Q~van~lnalsKWPd-~~~C~~aa~~lA~~la~d~~l~~~~~p~~--va~~LnalS 467 (2710)
T PRK14707 405 DLELRKGLDPQGVSNALNALAKWPD-LPICGQAVSALAGRLAHDTELCKALDPIN--VTQALDALS 467 (2710)
T ss_pred ChhhhhhcchhhHHHHHHHhhcCCc-chhHHHHHHHHHHHHhccHHHHhhcChHH--HHHHHHHhh
Confidence 5555666544554443333334454 334444444444 4666667666654433 234444443
No 268
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=69.96 E-value=88 Score=29.00 Aligned_cols=136 Identities=11% Similarity=0.054 Sum_probs=85.9
Q ss_pred cCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhhh--cccHH
Q 044293 18 QSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLAS--METIY 95 (236)
Q Consensus 18 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~--~g~i~ 95 (236)
.+-++-++..+...|+.-...-|+. +.+- .+++..-+.|+..+..++.....++..++.+..+...+.. ..+-.
T Consensus 285 ~Dv~d~IRv~c~~~L~dwi~lvP~y---f~k~-~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRFk~ 360 (740)
T COG5537 285 IDVDDVIRVLCSMSLRDWIGLVPDY---FRKI-LGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERFKD 360 (740)
T ss_pred cchhHHHHHHHHHHHHHHHhcchHH---HHhh-hcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 4456667777877787776654433 4444 5777777888888889999999999999998877664442 34667
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhc
Q 044293 96 RLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQ 163 (236)
Q Consensus 96 ~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~ 163 (236)
.++.++..+.+. ++..+..++..+..... .+...+..+...+.+..++-++.....+.++|.
T Consensus 361 rILE~~r~D~d~-VRi~sik~l~~lr~lg~-----L~~SeIlIvsscmlDi~pd~r~~~~E~v~~icK 422 (740)
T COG5537 361 RILEFLRTDSDC-VRICSIKSLCYLRILGV-----LSSSEILIVSSCMLDIIPDSRENIVESVESICK 422 (740)
T ss_pred HHHHHHhhccch-hhHHHHHHHHHHHHhcc-----cchhHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence 777887776344 77777777776654220 112233444445555555433333344444443
No 269
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=69.91 E-value=1.2e+02 Score=30.08 Aligned_cols=141 Identities=13% Similarity=0.104 Sum_probs=74.0
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHH----HHHhhCCCCc-----hhHH
Q 044293 17 SQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLS----ILLNLSLNPD-----LKQS 87 (236)
Q Consensus 17 L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~----~L~~l~~~~~-----~~~~ 87 (236)
+.+=+..+++.++++|++++...++ .... +.+|++++...+.+...+....- ++.++=.... ....
T Consensus 553 v~HWd~~irelaa~aL~~Ls~~~pk----~~a~-~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~ 627 (1133)
T KOG1943|consen 553 VCHWDVKIRELAAYALHKLSLTEPK----YLAD-YVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENR 627 (1133)
T ss_pred cccccHHHHHHHHHHHHHHHHhhHH----hhcc-cchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHH
Confidence 4455788999999999999876443 2444 88999998887777766543322 3333222221 0111
Q ss_pred hhh-cccHHHHHH-HHhccCCHHHHHHHHHHHHHhcccchh-hhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhc
Q 044293 88 LAS-METIYRLNW-IIQSSSSQETVKLASSLICSLAMLDKN-KARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQ 163 (236)
Q Consensus 88 i~~-~g~i~~L~~-lL~~~~~~~~~~~a~~~L~~Ls~~~~~-~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~ 163 (236)
|.. ...++++.+ .++.|...-++...+..+..++..+.- ...+...+.-..+.+.+...+ ..+..+.+++..++.
T Consensus 628 i~~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s 705 (1133)
T KOG1943|consen 628 IAGLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVS 705 (1133)
T ss_pred hhhhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHH
Confidence 111 112444433 334442223444556666666655431 112222333333334443344 556666777776665
No 270
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=69.16 E-value=60 Score=30.83 Aligned_cols=123 Identities=13% Similarity=0.097 Sum_probs=71.2
Q ss_pred HHHHHHHH-hcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhcc-CCChHHHHHHHHHHHhhCCCCchhH
Q 044293 9 TINNCVSR-SQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSK-SSSPIIRTLSLSILLNLSLNPDLKQ 86 (236)
Q Consensus 9 ~i~~lv~~-L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~ 86 (236)
.|.+|+.. .++.+.++++.|+.+|...+..+++ -.|..|.+|+ +.++.+|--++.+|.-.|....++.
T Consensus 555 air~lLh~aVsD~nDDVrRaAVialGFVl~~dp~----------~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e 624 (929)
T KOG2062|consen 555 AIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE----------QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE 624 (929)
T ss_pred hHHHhhcccccccchHHHHHHHHHheeeEecChh----------hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH
Confidence 34555544 3456667777777777776665543 2344455554 5688899899999987777777766
Q ss_pred HhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHh-cc-cchhhhhhcccCcHHHHHHhhcCCCcHH
Q 044293 87 SLASMETIYRLNWIIQSSSSQETVKLASSLICSL-AM-LDKNKARFGVAGTVQVLVKAVSAPSNPA 150 (236)
Q Consensus 87 ~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~L-s~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ 150 (236)
.|. .+++++. .. ..-+|+-|+-++.-+ .. .+...... .|+.+.+.+++.+.+.+.
T Consensus 625 Ai~---lLepl~~---D~-~~fVRQgAlIa~amIm~Q~t~~~~pkv--~~frk~l~kvI~dKhEd~ 681 (929)
T KOG2062|consen 625 AIN---LLEPLTS---DP-VDFVRQGALIALAMIMIQQTEQLCPKV--NGFRKQLEKVINDKHEDG 681 (929)
T ss_pred HHH---HHhhhhc---Ch-HHHHHHHHHHHHHHHHHhcccccCchH--HHHHHHHHHHhhhhhhHH
Confidence 553 3444433 22 233555555554432 22 22222221 567777778887765543
No 271
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.87 E-value=1.3e+02 Score=30.22 Aligned_cols=78 Identities=23% Similarity=0.301 Sum_probs=59.3
Q ss_pred hhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhc-CCCChHHHHHhCcHHHHHHHhcC---CChhhHHHHHHHHHHH
Q 044293 127 KARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQ-FHGNSTLAVRAGAVSELIHLIGS---TEAEDLAGTSLAVLNL 202 (236)
Q Consensus 127 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~-~~~~~~~~~~~g~i~~lv~ll~~---~~~~~~~~~a~~~L~~ 202 (236)
++.|..+|++..|++++....+..+-.-+..+..+++ ++.|....-..|++..+++++.. ++ .....++.++...
T Consensus 901 k~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgs-spfLshalkIvem 979 (2799)
T KOG1788|consen 901 KQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGS-SPFLSHALKIVEM 979 (2799)
T ss_pred HhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCC-chHhhccHHHHHH
Confidence 5667789999999999988888888888888888888 46777777778999999888754 22 3355666666666
Q ss_pred HcC
Q 044293 203 LAR 205 (236)
Q Consensus 203 l~~ 205 (236)
|+.
T Consensus 980 Lga 982 (2799)
T KOG1788|consen 980 LGA 982 (2799)
T ss_pred Hhh
Confidence 553
No 272
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=68.38 E-value=3.5 Score=36.86 Aligned_cols=67 Identities=15% Similarity=0.179 Sum_probs=43.3
Q ss_pred HHHHHhh-cCCCcHHHHHHHHHHHHHhcCCCChHHHHH-hCcHHHHHHHhcCCChhhHHHHHHHHHHHHc
Q 044293 137 QVLVKAV-SAPSNPAGHHLLSSLAELVQFHGNSTLAVR-AGAVSELIHLIGSTEAEDLAGTSLAVLNLLA 204 (236)
Q Consensus 137 ~~Lv~lL-~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~-~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~ 204 (236)
..+.+.+ ...++.+.+.+..++.+++.+.++|....- ...-..++.++.... +++-+.+..++..+-
T Consensus 330 ~~~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~-~~~~~~~~~a~~~~~ 398 (763)
T KOG4231|consen 330 LKALKSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPE-PRVNKAAARALAILG 398 (763)
T ss_pred HHHHHHHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccc-cccchhhhHHHHHhh
Confidence 3334433 356888999999999999999888875443 334445666665542 445555555655544
No 273
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=67.97 E-value=64 Score=26.61 Aligned_cols=60 Identities=15% Similarity=0.065 Sum_probs=45.0
Q ss_pred cccHHHHHHHHhccC-CHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHH
Q 044293 91 METIYRLNWIIQSSS-SQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAE 160 (236)
Q Consensus 91 ~g~i~~L~~lL~~~~-~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~ 160 (236)
.-.|+.|.+.|.... .+-+|..|+.+|..++..+ .++.|.+++.++.+-+.+.|.-+|--
T Consensus 217 ~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e~----------~~~vL~e~~~D~~~vv~esc~valdm 277 (289)
T KOG0567|consen 217 PAAIPSLIKVLLDETEHPMVRHEAAEALGAIADED----------CVEVLKEYLGDEERVVRESCEVALDM 277 (289)
T ss_pred hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCHH----------HHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 457889998887542 6778888999998877644 57888899988877777777666643
No 274
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=67.78 E-value=19 Score=29.97 Aligned_cols=56 Identities=25% Similarity=0.274 Sum_probs=45.8
Q ss_pred HHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCh--------------HHHHHHHhccCcHHHHHhhccC
Q 044293 6 VRETINNCVSRSQSDSYEDQQKALQTLASITRVSP--------------QYRSLLAQTDGAISTLLGLSKS 62 (236)
Q Consensus 6 ~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~--------------~~~~~i~~~~g~i~~Lv~lL~~ 62 (236)
-...|..+++.|.+++...+..|+.+|..++.+.- .|-..+.+. |+++.|+.+|..
T Consensus 58 ~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~-g~~~~l~~~L~~ 127 (293)
T PF07923_consen 58 RKDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYEC-GGFPALWELLKM 127 (293)
T ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHH
Confidence 46789999999999999999999999998876521 366777887 999999998854
No 275
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=66.85 E-value=16 Score=25.79 Aligned_cols=39 Identities=13% Similarity=0.161 Sum_probs=31.0
Q ss_pred cHHHHHHHhcCCChhhHHHHHHHHHHHHcCChhhHHHHHh
Q 044293 176 AVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGMIALTK 215 (236)
Q Consensus 176 ~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~ 215 (236)
+++.|+.-|.+.+ +++...|+.+|...|.+++..+.++.
T Consensus 9 ~i~lLv~QL~D~~-~~V~~~A~~iL~e~c~~~~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDPS-PEVVAAALEILEEACEDKEYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCCC-HHHHHHHHHHHHHHHhchhhHHHHHH
Confidence 5788888888874 78999999999999988866555543
No 276
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=66.73 E-value=71 Score=26.40 Aligned_cols=70 Identities=20% Similarity=0.124 Sum_probs=45.4
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHH-HHHHhccCcHHHHHhhcc-------C-----CChHHHHHHHHH
Q 044293 8 ETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYR-SLLAQTDGAISTLLGLSK-------S-----SSPIIRTLSLSI 74 (236)
Q Consensus 8 ~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~-~~i~~~~g~i~~Lv~lL~-------~-----~~~~~~~~a~~~ 74 (236)
-.+|-++.++.+.+++.+..++..|..+...-+... ..+... |..+.+-+-|. + +...+...+..+
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~t-Gl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~ 197 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRT-GLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPA 197 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHc-ChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHH
Confidence 467888889998999999999999999987633222 224555 65555444332 1 223455566666
Q ss_pred HHhh
Q 044293 75 LLNL 78 (236)
Q Consensus 75 L~~l 78 (236)
|..+
T Consensus 198 L~~L 201 (282)
T PF10521_consen 198 LLSL 201 (282)
T ss_pred HHHH
Confidence 6666
No 277
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=66.71 E-value=33 Score=32.33 Aligned_cols=109 Identities=13% Similarity=0.050 Sum_probs=67.3
Q ss_pred HHHHHhhccCCChHHHHHHHHHHHh----hCCCCchhHHhh--hcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchh
Q 044293 53 ISTLLGLSKSSSPIIRTLSLSILLN----LSLNPDLKQSLA--SMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKN 126 (236)
Q Consensus 53 i~~Lv~lL~~~~~~~~~~a~~~L~~----l~~~~~~~~~i~--~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~ 126 (236)
...++.+|++.+-..|-..+.+.+| +..+++.-.... -...+..++.-+... ++=++..|.-.+..+..-+.
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~-~py~RtKalqv~~kifdl~s- 378 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDT-YPYTRTKALQVLEKIFDLNS- 378 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHHHHHhCcc-
Confidence 4556667777665444444444444 444443221111 135666666666666 78888888888777765441
Q ss_pred hhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhc
Q 044293 127 KARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQ 163 (236)
Q Consensus 127 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~ 163 (236)
+-.=.+..++...++-+++.+.-++++|...+..|-.
T Consensus 379 k~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~ 415 (1128)
T COG5098 379 KTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLM 415 (1128)
T ss_pred cccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Confidence 1111125667778888888888899999998887754
No 278
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=66.66 E-value=30 Score=24.89 Aligned_cols=125 Identities=26% Similarity=0.220 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHhcCC-hHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCC---------Cchh-HH----h
Q 044293 24 DQQKALQTLASITRVS-PQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLN---------PDLK-QS----L 88 (236)
Q Consensus 24 ~~~~a~~~L~~l~~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~---------~~~~-~~----i 88 (236)
++.+.+.++..++..+ |+.. ++.++.++.++++ ++......+.+|..+... +..| .. +
T Consensus 4 i~~kl~~~l~~i~~~~~P~~W------p~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l 76 (148)
T PF08389_consen 4 IRNKLAQVLAEIAKRDWPQQW------PDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDAL 76 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTTTS------TTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHChhhC------chHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHH
Confidence 4556666676666542 2221 3677778888776 455455555555543211 1112 22 2
Q ss_pred hh--cccHHHHHHHHhccCC---HHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHH
Q 044293 89 AS--METIYRLNWIIQSSSS---QETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSL 158 (236)
Q Consensus 89 ~~--~g~i~~L~~lL~~~~~---~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL 158 (236)
.+ ...++.+.+.+....+ .++...+..++......-. -..+.+.+.++.+.++|.+++ .+..|+.+|
T Consensus 77 ~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~-~~~i~~~~~l~~~~~~l~~~~--~~~~A~~cl 148 (148)
T PF08389_consen 77 RSNSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIP-IELIINSNLLNLIFQLLQSPE--LREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS--HHHHHSSSHHHHHHHHTTSCC--CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCC-HHHhccHHHHHHHHHHcCCHH--HHHHHHHhC
Confidence 21 2455555556655422 7888899999988776443 455556779999999996554 567777665
No 279
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.37 E-value=1.4e+02 Score=29.38 Aligned_cols=208 Identities=10% Similarity=0.064 Sum_probs=107.9
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhcc-CCChHHHHHHHHHHHhhCCC-CchhHHhh--
Q 044293 14 VSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSK-SSSPIIRTLSLSILLNLSLN-PDLKQSLA-- 89 (236)
Q Consensus 14 v~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~-~~~~~~i~-- 89 (236)
...++++---.|.+|++.+..++..+=....-+. .+++...+.|. +.+-.++..|+-||..+-.+ +.....+.
T Consensus 468 fP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~---~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~h 544 (1010)
T KOG1991|consen 468 FPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLS---EALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAH 544 (1010)
T ss_pred hHhhcCchhHHHHHHHHHHHHHHhccCCChHHHH---HHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhh
Confidence 3444556556788999999999943211112122 23444555555 55667788888888865444 34444454
Q ss_pred hcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccc-hhhhhhcccCcHHHHHHhhcC---C---CcHHHHHHHHHHHHHh
Q 044293 90 SMETIYRLNWIIQSSSSQETVKLASSLICSLAMLD-KNKARFGVAGTVQVLVKAVSA---P---SNPAGHHLLSSLAELV 162 (236)
Q Consensus 90 ~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~---~---~~~~~~~a~~aL~~L~ 162 (236)
-.+.++.|+++.+..++.++.-..-..+...+..= -....+. ........++++. . +++-.-.|..+|..++
T Consensus 545 vp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~-q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~ 623 (1010)
T KOG1991|consen 545 VPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELC-QNLAETFLKVLQTSEDEDESDDDKAIAASGILRTIS 623 (1010)
T ss_pred hhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHH-HHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHH
Confidence 24667777777766533333222223333333311 1111111 3444555666663 1 1222334445554443
Q ss_pred c---CCCChHHH-H--HhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC-ChhhHHHHHhcCCcHHHHHHHhhC
Q 044293 163 Q---FHGNSTLA-V--RAGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR-FDEGMIALTKTDQIVSLMVDVLKG 229 (236)
Q Consensus 163 ~---~~~~~~~~-~--~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~~i~~lv~~l~~ 229 (236)
+ +-++...+ . +.-+.|.+-..|+.. ..+..+.++.+...+.. .++.--.+++ +.+.+.++++.
T Consensus 624 Til~s~e~~p~vl~~le~~~l~vi~~iL~~~-i~dfyeE~~ei~~~~t~~~~~Isp~mW~---ll~li~e~~~~ 693 (1010)
T KOG1991|consen 624 TILLSLENHPEVLKQLEPIVLPVIGFILKND-ITDFYEELLEIVSSLTFLSKEISPIMWG---LLELILEVFQD 693 (1010)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHhhhhhhhcccCHHHHH---HHHHHHHHHhh
Confidence 3 33333332 2 234455555555554 46788888888887764 4455556663 34555555544
No 280
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=66.26 E-value=1.2e+02 Score=28.67 Aligned_cols=112 Identities=16% Similarity=0.143 Sum_probs=70.7
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHH------HHHHHhccCcHH---HHHhhccCC--------------
Q 044293 7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQY------RSLLAQTDGAIS---TLLGLSKSS-------------- 63 (236)
Q Consensus 7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~------~~~i~~~~g~i~---~Lv~lL~~~-------------- 63 (236)
+..|..|+.+|.+++..+.+++-..+..+...+.+. -..+.+. |-.. .|+. ++.+
T Consensus 3 ~~~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~y~~~t-~s~~~~~il~~-~~~P~~K~~~~~l~~~~~ 80 (668)
T PF04388_consen 3 QASITELLSLLESNDLSVLEEIKALLQELLNSDREPWLVNGLVDYYLST-NSQRALEILVG-VQEPHDKHLFDKLNDYFV 80 (668)
T ss_pred cccHHHHHHHhcCCchhhHHHHHHHHHHHhhccchHHHHHHHHHHHhhc-CcHHHHHHHHh-cCCccHHHHHHHHHHHHc
Confidence 356888999999888888777777777665543221 1111111 1111 1111 1111
Q ss_pred ChHHHHHHHHHHHhhCCC-CchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHh
Q 044293 64 SPIIRTLSLSILLNLSLN-PDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSL 120 (236)
Q Consensus 64 ~~~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~L 120 (236)
.+..|..++..|+.+... +.-...|.+...++.|+++|+.+.+..+...|+.+|.-|
T Consensus 81 ~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~Liml 138 (668)
T PF04388_consen 81 KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIML 138 (668)
T ss_pred CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHH
Confidence 235577788888877665 556788889999999999999875566666666665543
No 281
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=66.09 E-value=1.2e+02 Score=28.79 Aligned_cols=110 Identities=15% Similarity=0.081 Sum_probs=68.2
Q ss_pred HHhhccCCChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccc--hhhhhhccc
Q 044293 56 LLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLD--KNKARFGVA 133 (236)
Q Consensus 56 Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~--~~~~~i~~~ 133 (236)
+...+.++++..-...+.++.+++.-+.-...= ....+++-....+.. -..+......+|..++..+ .-+..+.+.
T Consensus 446 l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~-~~~~~~~~~~~~N~~-~~~~~~~~~~il~rls~~~~~~L~~l~~d~ 523 (727)
T PF12726_consen 446 LLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK-EKDELDPAKTQFNKS-LGQITDLISQILERLSDFDPSHLKELLSDP 523 (727)
T ss_pred HHHhhcCCChHHHHHHHHHHHHhccccccCCcc-cccCcchHHHHHHHH-HHHHHHHHHHHHHHHhcCCHHHHHHHHcCc
Confidence 334444555566566666666665543321100 222233333333332 3456666778888888765 334455568
Q ss_pred CcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCCCh
Q 044293 134 GTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNS 168 (236)
Q Consensus 134 g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~ 168 (236)
++...++..+-++++++.+.|...|..... .++|
T Consensus 524 ~~~~~i~s~lfsp~~~l~qaA~~llk~~~d-~~~R 557 (727)
T PF12726_consen 524 DAAQAIWSLLFSPDDDLYQAAQDLLKQAFD-VDGR 557 (727)
T ss_pred chhhHHHhheeCCChHHHHHHHHHHHHHhc-CCcH
Confidence 999999999999999999999999988875 4443
No 282
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.07 E-value=33 Score=30.73 Aligned_cols=70 Identities=16% Similarity=0.161 Sum_probs=56.0
Q ss_pred HHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-ChHHHHHHHhccCcHHHHHhhccCC--ChHHHHHHHHHHH
Q 044293 6 VRETINNCVSRSQSDSYEDQQKALQTLASITRV-SPQYRSLLAQTDGAISTLLGLSKSS--SPIIRTLSLSILL 76 (236)
Q Consensus 6 ~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~ 76 (236)
.++.+..|.+++++.++.++..|+..|-.+.++ +..+...|++. +++..+|...... +..+|+.++.+|-
T Consensus 36 ~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k-~fL~emVk~~k~~~~~~~Vr~kiL~LI~ 108 (470)
T KOG1087|consen 36 PKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASK-EFLNEMVKRPKNKPRDLKVREKILELID 108 (470)
T ss_pred cHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHH-HHHHHHHhccccCCcchhHHHHHHHHHH
Confidence 467888999999888888999999987777766 33456678886 9999999998764 5688999888886
No 283
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=64.27 E-value=1.2e+02 Score=27.86 Aligned_cols=92 Identities=16% Similarity=0.181 Sum_probs=49.5
Q ss_pred ccHHHHHHHHhcc---CCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhc-CC--CcHHHHHHHHHHHHHhcCC
Q 044293 92 ETIYRLNWIIQSS---SSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVS-AP--SNPAGHHLLSSLAELVQFH 165 (236)
Q Consensus 92 g~i~~L~~lL~~~---~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~-~~--~~~~~~~a~~aL~~L~~~~ 165 (236)
..++.+...|+.. .+.+-+..+..+|.|+.. ...++.+..++. +. +..++..|+++|..++...
T Consensus 442 ~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~----------~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~ 511 (574)
T smart00638 442 ELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH----------PSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRD 511 (574)
T ss_pred HHHHHHHHHHHHHHhcCCchheeeHHHhhhccCC----------hhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhC
Confidence 3555555555431 133334445555555544 334555666665 22 3467889999999887533
Q ss_pred CChHHHHHhCcHHHHHHHhcCC-ChhhHHHHHHHHH
Q 044293 166 GNSTLAVRAGAVSELIHLIGST-EAEDLAGTSLAVL 200 (236)
Q Consensus 166 ~~~~~~~~~g~i~~lv~ll~~~-~~~~~~~~a~~~L 200 (236)
... +-+.++.++.+. .+.+++-.|.-+|
T Consensus 512 p~~-------v~~~l~~i~~n~~e~~EvRiaA~~~l 540 (574)
T smart00638 512 PRK-------VQEVLLPIYLNRAEPPEVRMAAVLVL 540 (574)
T ss_pred chH-------HHHHHHHHHcCCCCChHHHHHHHHHH
Confidence 222 225566666553 3455655544444
No 284
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=63.37 E-value=46 Score=28.23 Aligned_cols=76 Identities=14% Similarity=0.197 Sum_probs=51.0
Q ss_pred HHHHHHHHHhhCCCCchhHHhhhc--ccHHHHHHHHhccC--CHHHHHHHHHHHHHhcccch----hhhhhc---ccCcH
Q 044293 68 RTLSLSILLNLSLNPDLKQSLASM--ETIYRLNWIIQSSS--SQETVKLASSLICSLAMLDK----NKARFG---VAGTV 136 (236)
Q Consensus 68 ~~~a~~~L~~l~~~~~~~~~i~~~--g~i~~L~~lL~~~~--~~~~~~~a~~~L~~Ls~~~~----~~~~i~---~~g~i 136 (236)
+-.|+.++..+...+..-..+... +++.-|+++++.+. ..+++..|..+|..++.... ....++ ..|.+
T Consensus 239 RllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HGiL 318 (329)
T PF06012_consen 239 RLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHGIL 318 (329)
T ss_pred HHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCcccH
Confidence 344555565555555666666644 59999999999764 57888999999999988653 222232 26777
Q ss_pred HHHHHhh
Q 044293 137 QVLVKAV 143 (236)
Q Consensus 137 ~~Lv~lL 143 (236)
+.+++..
T Consensus 319 ~~llR~~ 325 (329)
T PF06012_consen 319 PQLLRKC 325 (329)
T ss_pred HHHHHHH
Confidence 7776543
No 285
>KOG2152 consensus Sister chromatid cohesion protein [Cell cycle control, cell division, chromosome partitioning]
Probab=62.91 E-value=1.2e+02 Score=28.77 Aligned_cols=196 Identities=13% Similarity=0.127 Sum_probs=95.4
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHH--HHhcCChHHHHHHHhccCcHHHHHhhccCCC-hHHHH-HHHHHHHhhCCCC
Q 044293 7 RETINNCVSRSQSDSYEDQQKALQTLA--SITRVSPQYRSLLAQTDGAISTLLGLSKSSS-PIIRT-LSLSILLNLSLNP 82 (236)
Q Consensus 7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~--~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~-~~~~~-~a~~~L~~l~~~~ 82 (236)
-+.+..+++-|+.........++.+|. .=+. .+.+|+.+.++ |++..+++.|...+ ..... .+..+++-|+.+.
T Consensus 331 ~dd~~yiLStlq~~~~~m~trCLSaISla~Kc~-~p~FR~~lRa~-G~v~~vfkalmDs~~~d~Lsl~tsalMylLs~d~ 408 (865)
T KOG2152|consen 331 TDDLEYILSTLQSALLPMETRCLSAISLADKCV-MPDFRMHLRAH-GMVDAVFKALMDSHEDDLLSLCTSALMYLLSRDK 408 (865)
T ss_pred hhhHHHHHhhhhhccccHHHHHHhhhhhhhhcc-ChHHHHHHHHc-ccHHHHHHHHhccccchhhHHHHHHHHHHHhhhh
Confidence 344555566666542223333444443 2222 47899999998 99999999886432 22222 2334444555544
Q ss_pred ch-hHHhhhcccHHHHHHHHh---ccCCHHHHHHHH----HHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHH--H
Q 044293 83 DL-KQSLASMETIYRLNWIIQ---SSSSQETVKLAS----SLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAG--H 152 (236)
Q Consensus 83 ~~-~~~i~~~g~i~~L~~lL~---~~~~~~~~~~a~----~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~--~ 152 (236)
-+ ..... -+...+.+|. ...+.+.+..-. ..+..||... ..||=. ..+...+.... .
T Consensus 409 lnmdldf~---Slelmi~LL~~ek~~gS~e~~~~~~n~~~evir~L~e~~-------~~gG~~---~h~n~~~~t~~~~~ 475 (865)
T KOG2152|consen 409 LNMDLDFL---SLELMIHLLRLEKFEGSHESRDKFTNLVKEVIRSLCELQ-------LRGGQK---VHLNMRNETLGPSS 475 (865)
T ss_pred hcccccch---hHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHH-------HhcCCc---ccccccCCCCCchh
Confidence 33 22222 3334444443 222444442211 1111122110 011100 01111111111 2
Q ss_pred HHHHH-HHHHhcC---CCChHHHHHhCcHHHHHHHhcCC--------C---hhhHHHHHHHHHHHHcC-ChhhHHHHHhc
Q 044293 153 HLLSS-LAELVQF---HGNSTLAVRAGAVSELIHLIGST--------E---AEDLAGTSLAVLNLLAR-FDEGMIALTKT 216 (236)
Q Consensus 153 ~a~~a-L~~L~~~---~~~~~~~~~~g~i~~lv~ll~~~--------~---~~~~~~~a~~~L~~l~~-~~~~~~~i~~~ 216 (236)
.+..+ +..|++. +-.+..+...|+....+.-+... + .....+.|+++|.+.+. +++++.-+...
T Consensus 476 lamet~vl~lsSk~~~d~~k~elr~Lg~lq~iv~~i~~~~~~~~~~~~e~~~~~tL~rC~rvles~s~hn~snq~yLis~ 555 (865)
T KOG2152|consen 476 LAMETLVLILSSKRAGDWFKSELRNLGGLQHIVSKIETNVSPTSDNGDESSVILTLERCLRVLESVSVHNGSNQGYLISL 555 (865)
T ss_pred hhhheeEEEEeccccchhHHHHHHhcchHHHHHHHHHhccCcCCCCcchhhHHHhHHHHHHHhhcccccCcchhHHHHhc
Confidence 23333 2233331 22366677789999988877642 1 12234889999999886 66777777766
Q ss_pred C
Q 044293 217 D 217 (236)
Q Consensus 217 g 217 (236)
|
T Consensus 556 g 556 (865)
T KOG2152|consen 556 G 556 (865)
T ss_pred c
Confidence 6
No 286
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=62.71 E-value=26 Score=25.61 Aligned_cols=72 Identities=24% Similarity=0.212 Sum_probs=55.9
Q ss_pred CcHHHHHhhccCCChHHHHHHHHHHHhhCCCC--chhHHhhhcccHHHHHHHHhccCCHH---HHHHHHHHHHHhcc
Q 044293 51 GAISTLLGLSKSSSPIIRTLSLSILLNLSLNP--DLKQSLASMETIYRLNWIIQSSSSQE---TVKLASSLICSLAM 122 (236)
Q Consensus 51 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~--~~~~~i~~~g~i~~L~~lL~~~~~~~---~~~~a~~~L~~Ls~ 122 (236)
.++..|-.-|.++++.++..|+.+|-.|..+- .....+....++..|.+++.+..... ++..+...|...+.
T Consensus 42 ea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 42 EAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 46777888899999999999999998887764 34677888889999999988653333 78888777765544
No 287
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=61.42 E-value=90 Score=25.60 Aligned_cols=141 Identities=16% Similarity=0.075 Sum_probs=73.8
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccC--CChHHHHHHHHHHHhhCCCCchhHHhh
Q 044293 12 NCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKS--SSPIIRTLSLSILLNLSLNPDLKQSLA 89 (236)
Q Consensus 12 ~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~--~~~~~~~~a~~~L~~l~~~~~~~~~i~ 89 (236)
.|=..|.++++..|.+|+..|......-+.. .+.+ .-+..|++++.+ .|......++.++..|...+......
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~--~L~~--~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~- 77 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPD--FLSR--QEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES- 77 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHh--hccH--HHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh-
Confidence 3445677889999999999998877653321 1222 235666665432 34455555566666655433321111
Q ss_pred hcccHHHHHHHHhccC-CHHHHHHHHHHHHHhcccch-hhhhhcccCcHHHHHHhhcCC-CcHHHHHHHHHH
Q 044293 90 SMETIYRLNWIIQSSS-SQETVKLASSLICSLAMLDK-NKARFGVAGTVQVLVKAVSAP-SNPAGHHLLSSL 158 (236)
Q Consensus 90 ~~g~i~~L~~lL~~~~-~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~aL 158 (236)
....+..+.+..+... ....|..+-..|..+..... .-..+ ..+.+..+++.+... +|+..-.+...+
T Consensus 78 ~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~-~~~fv~~~i~~~~gEkDPRnLl~~F~l~ 148 (262)
T PF14500_consen 78 AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSM-GDDFVYGFIQLIDGEKDPRNLLLSFKLL 148 (262)
T ss_pred HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhc-hhHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 1122333333222111 34566667777777765432 12222 257778888877654 555444444333
No 288
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=61.33 E-value=1.2e+02 Score=27.14 Aligned_cols=144 Identities=13% Similarity=0.083 Sum_probs=81.3
Q ss_pred hHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHH-HHHhhCCCCchh
Q 044293 8 ETINNCVSRSQS-DSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLS-ILLNLSLNPDLK 85 (236)
Q Consensus 8 ~~i~~lv~~L~~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~-~L~~l~~~~~~~ 85 (236)
+.+..+++.|.+ .+...+..|++.|+.++.+++.--.--.+ -+|..+++--...++++...|.. ++.-++.+..-+
T Consensus 329 ~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE--~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~ 406 (516)
T KOG2956|consen 329 EILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTE--IAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ 406 (516)
T ss_pred HHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHH--HHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh
Confidence 445566677765 55666777889999888875432111111 24555555444555555554443 444566665443
Q ss_pred HHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcc--cCcHHHHHHhhcCCCcHHHHHHHHHHHHHh
Q 044293 86 QSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGV--AGTVQVLVKAVSAPSNPAGHHLLSSLAELV 162 (236)
Q Consensus 86 ~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~ 162 (236)
... .+..++... |+..-..+...+..+...-. ++.+.. ..+.|.+++--.+.+..+++.|+=||-.+-
T Consensus 407 ~I~-------~i~~~Ilt~-D~~~~~~~iKm~Tkl~e~l~-~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 407 CIV-------NISPLILTA-DEPRAVAVIKMLTKLFERLS-AEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred HHH-------HHhhHHhcC-cchHHHHHHHHHHHHHhhcC-HHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 222 222333333 44444445555666655332 222222 688899999988888888888887775543
No 289
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=58.28 E-value=67 Score=29.18 Aligned_cols=71 Identities=18% Similarity=0.161 Sum_probs=50.3
Q ss_pred CcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhh-hcccHHHHHHHHhccCCHHHHHHHHHHHHHhcc
Q 044293 51 GAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLA-SMETIYRLNWIIQSSSSQETVKLASSLICSLAM 122 (236)
Q Consensus 51 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~-~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~ 122 (236)
.....+-.+..+.++++++.+..++.+++.+.++|.... +...=..++.++-.. .+++-+.++.++..+-.
T Consensus 328 ~~~~~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~-~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 328 DMLKALKSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTP-EPRVNKAAARALAILGE 399 (763)
T ss_pred HHHHHHHHHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhccc-ccccchhhhHHHHHhhh
Confidence 344444455556788999999999999999999876555 555566677777665 56666667777666554
No 290
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.67 E-value=11 Score=32.33 Aligned_cols=62 Identities=15% Similarity=0.185 Sum_probs=50.2
Q ss_pred HHHHHHHHhcCChHHHHHHHhccCcHHHHHhh--ccCCChHHHHHHHHHHHhhCCCC-chhHHhhh
Q 044293 28 ALQTLASITRVSPQYRSLLAQTDGAISTLLGL--SKSSSPIIRTLSLSILLNLSLNP-DLKQSLAS 90 (236)
Q Consensus 28 a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~l--L~~~~~~~~~~a~~~L~~l~~~~-~~~~~i~~ 90 (236)
..+.+.++++.+++++..+.+- ||++.+++= .+..+|-+++.+.-++.+|-.+. +|+..|.+
T Consensus 376 vir~ia~lcyk~~~~qD~vrel-~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~k 440 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVREL-NGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGK 440 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhc-CCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhc
Confidence 4567889999999999999999 999988765 34568999999999999888775 67776654
No 291
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=57.59 E-value=62 Score=25.04 Aligned_cols=37 Identities=11% Similarity=0.096 Sum_probs=27.0
Q ss_pred hHHHhHHHHHHHHh----cCCCHHHHHHHHHHHHHHhcCCh
Q 044293 4 PRVRETINNCVSRS----QSDSYEDQQKALQTLASITRVSP 40 (236)
Q Consensus 4 ~~~~~~i~~lv~~L----~~~~~~~~~~a~~~L~~l~~~~~ 40 (236)
+.+-+.+|.++.-+ .+.++++.+.++.+|+.+...++
T Consensus 72 ~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~ 112 (183)
T PF10274_consen 72 EKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSD 112 (183)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhh
Confidence 33455566665555 57899999999999999976543
No 292
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=57.59 E-value=25 Score=29.34 Aligned_cols=55 Identities=16% Similarity=0.165 Sum_probs=44.4
Q ss_pred ccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCC---------------CChHHHHHhCcHHHHHHHhcC
Q 044293 132 VAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFH---------------GNSTLAVRAGAVSELIHLIGS 186 (236)
Q Consensus 132 ~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~---------------~~~~~~~~~g~i~~lv~ll~~ 186 (236)
+...+..++.-|.+.+...+..|+++|.+++.+. .|...+.+.|++++++.+|+.
T Consensus 58 ~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~ 127 (293)
T PF07923_consen 58 RKDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKM 127 (293)
T ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 4677888999998888778889999999887632 156677889999999999873
No 293
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=57.47 E-value=29 Score=25.93 Aligned_cols=26 Identities=15% Similarity=0.208 Sum_probs=14.1
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHHH
Q 044293 136 VQVLVKAVSAPSNPAGHHLLSSLAEL 161 (236)
Q Consensus 136 i~~Lv~lL~~~~~~~~~~a~~aL~~L 161 (236)
|++||.+|.+.+..+...|+.+|.+-
T Consensus 96 V~~LI~~L~~~d~~lA~~Aa~aLk~T 121 (154)
T PF11791_consen 96 VQPLIDLLKSDDEELAEEAAEALKNT 121 (154)
T ss_dssp HHHHHHGG--G-TTTHHHHHHHHHT-
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHhh
Confidence 56666776666656666666666543
No 294
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=56.22 E-value=31 Score=25.43 Aligned_cols=35 Identities=26% Similarity=0.142 Sum_probs=24.7
Q ss_pred hhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHH
Q 044293 84 LKQSLASMETIYRLNWIIQSSSSQETVKLASSLICS 119 (236)
Q Consensus 84 ~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~ 119 (236)
-|........-..+.++|.++ +.+++..|..+|..
T Consensus 9 pk~l~~~~~l~~~~~~LL~~~-d~~vQklAL~cll~ 43 (141)
T PF07539_consen 9 PKSLYRSDELYDALLRLLSSR-DPEVQKLALDCLLT 43 (141)
T ss_pred cHHHhhHHHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 344444555666777888888 78888888877765
No 295
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=56.11 E-value=1.7e+02 Score=27.04 Aligned_cols=150 Identities=19% Similarity=0.117 Sum_probs=66.8
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHH----hc--cCcHHHHHhhccCCChHHHHHHHHHHHhhCC
Q 044293 7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLA----QT--DGAISTLLGLSKSSSPIIRTLSLSILLNLSL 80 (236)
Q Consensus 7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~----~~--~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~ 80 (236)
...+-.|+..|+.-+.+........+..-. .....|..|. .. +..+..+.+++.++.-.- ..+..++..+..
T Consensus 346 ~~~f~~Lv~~lr~l~~~~L~~l~~~~~~~~-~~~~~r~~~lDal~~aGT~~av~~i~~~I~~~~~~~-~ea~~~l~~l~~ 423 (618)
T PF01347_consen 346 LSKFSRLVRLLRTLSYEDLEELYKQLKSKS-KKEQARKIFLDALPQAGTNPAVKFIKDLIKSKKLTD-DEAAQLLASLPF 423 (618)
T ss_dssp HHHHHHHHHHHTTS-HHHHHHHHHHHTTS----HHHHHHHHHHHHHH-SHHHHHHHHHHHHTT-S-H-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHh
Confidence 334556666666555444443333222211 0122232222 22 244556666665543221 234444544433
Q ss_pred CC-chhHHhhhcccHHHHHHHHhcc---CCHHHHHHHHHHHHHhcccch----------hhhhhcccCcHHHHHHhhc--
Q 044293 81 NP-DLKQSLASMETIYRLNWIIQSS---SSQETVKLASSLICSLAMLDK----------NKARFGVAGTVQVLVKAVS-- 144 (236)
Q Consensus 81 ~~-~~~~~i~~~g~i~~L~~lL~~~---~~~~~~~~a~~~L~~Ls~~~~----------~~~~i~~~g~i~~Lv~lL~-- 144 (236)
.. .. ....+..+..+++.. .++.++..|..++..|..... .+........++.+...+.
T Consensus 424 ~~~~P-----t~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 498 (618)
T PF01347_consen 424 HVRRP-----TEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEA 498 (618)
T ss_dssp T----------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHH
T ss_pred hcCCC-----CHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHH
Confidence 22 11 122344455555432 145566666655555543221 1122223566777777776
Q ss_pred --CCCcHHHHHHHHHHHHHhc
Q 044293 145 --APSNPAGHHLLSSLAELVQ 163 (236)
Q Consensus 145 --~~~~~~~~~a~~aL~~L~~ 163 (236)
.++...+..++++|+|+..
T Consensus 499 ~~~~~~~~~~~~LkaLgN~g~ 519 (618)
T PF01347_consen 499 VSRGDEEEKIVYLKALGNLGH 519 (618)
T ss_dssp HHTT-HHHHHHHHHHHHHHT-
T ss_pred hhccCHHHHHHHHHHhhccCC
Confidence 3455677888999999864
No 296
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=55.67 E-value=61 Score=28.28 Aligned_cols=72 Identities=13% Similarity=0.151 Sum_probs=56.6
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-ChHHHHHHHhccCcHHHHHhhcc-CCChHHHHHHHHHHHhhC
Q 044293 7 RETINNCVSRSQSDSYEDQQKALQTLASITRV-SPQYRSLLAQTDGAISTLLGLSK-SSSPIIRTLSLSILLNLS 79 (236)
Q Consensus 7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~l~ 79 (236)
++.|..+.++|.+.++.+...|+..+-.++.+ ....+..+... ++...|..++. +..+.+.+....++.+.+
T Consensus 44 kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr-~F~~el~al~~~~~h~kV~~k~~~lv~eWs 117 (462)
T KOG2199|consen 44 KDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSR-DFTTELRALIESKAHPKVCEKMRDLVKEWS 117 (462)
T ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhh-hHHHHHHHHHhhcccHHHHHHHHHHHHHHH
Confidence 56888999999999999999999988887766 34567888776 89999999988 567777776666665543
No 297
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=52.83 E-value=78 Score=23.87 Aligned_cols=57 Identities=12% Similarity=0.056 Sum_probs=36.2
Q ss_pred CCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhC
Q 044293 20 DSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLS 79 (236)
Q Consensus 20 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~ 79 (236)
+|..+....+..+.+....+.-+-.... ..+|.+..+|.+..+.....++..|..+.
T Consensus 41 ~D~svlvD~L~vl~~~~~~~~~tLd~c~---~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~ 97 (164)
T PF13925_consen 41 NDPSVLVDVLSVLNQSLKPEKWTLDLCV---DLLPLIEELLQSKYESYISVALEMLRSIL 97 (164)
T ss_pred CCchHHHHHHHHHHHhcCcCcccHHHHH---HHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 6667777776666655554322223222 56888888888887777777777766543
No 298
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=51.72 E-value=1.6e+02 Score=29.38 Aligned_cols=133 Identities=10% Similarity=0.037 Sum_probs=88.2
Q ss_pred CCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhh--hcccHHH
Q 044293 19 SDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLA--SMETIYR 96 (236)
Q Consensus 19 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~--~~g~i~~ 96 (236)
+-++++|..+...|..-....|+ .|... ..+..+-+.|+..+..+|..++.+|-.|..++.....+. -.-+=..
T Consensus 298 DV~~~IRaiCiqeLgiWi~~yP~---~Fl~d-sYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~R 373 (1048)
T KOG2011|consen 298 DVDPDIRAICIQELGIWIKSYPE---IFLSD-SYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDR 373 (1048)
T ss_pred cCchHHHHHHHHHHHHHHHhccH---HHhcc-hHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 55788999999999888776554 46665 888888899999999999999999999988866544332 3445556
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHH
Q 044293 97 LNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAE 160 (236)
Q Consensus 97 L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~ 160 (236)
++.+.....+..++.....++..+.... .+ ...-+..+..++-+.++++...|...|..
T Consensus 374 IVeMadrd~~~~Vrav~L~~~~~~~~~g----~L-~d~di~~Vy~Li~d~~r~~~~aa~~fl~~ 432 (1048)
T KOG2011|consen 374 IVEMADRDRNVSVRAVGLVLCLLLSSSG----LL-SDKDILIVYSLIYDSNRRVAVAAGEFLYK 432 (1048)
T ss_pred HHHHHhhhcchhHHHHHHHHHHHHhccc----cc-ChhHHHHHHHHHhccCcchHHHHHHHHHH
Confidence 6666633224455544444433332211 12 22335667777777777777776666643
No 299
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=51.60 E-value=1.6e+02 Score=25.46 Aligned_cols=178 Identities=15% Similarity=0.115 Sum_probs=97.8
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCCh--HHHHHHHhccCcHHHHHhhcc----C-------CChHHHHHHHHHHHhhCCCCc
Q 044293 17 SQSDSYEDQQKALQTLASITRVSP--QYRSLLAQTDGAISTLLGLSK----S-------SSPIIRTLSLSILLNLSLNPD 83 (236)
Q Consensus 17 L~~~~~~~~~~a~~~L~~l~~~~~--~~~~~i~~~~g~i~~Lv~lL~----~-------~~~~~~~~a~~~L~~l~~~~~ 83 (236)
|...+.+.+..|...|.+....++ ..+..+.+. ++.+.+.++ + .+.++...|+.++..+-.+++
T Consensus 2 la~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k---~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~ 78 (372)
T PF12231_consen 2 LAGSDRSSRLDAYMTLNNALKAYDNLPDRQALQDK---MSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPE 78 (372)
T ss_pred CCcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHH---HHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHH
Confidence 345667788888888876554422 223444433 555555442 2 244667788888888877776
Q ss_pred hhHHhhhcc---cHHHHHHHHhccC-CHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcC-----CCcHHHHHH
Q 044293 84 LKQSLASME---TIYRLNWIIQSSS-SQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSA-----PSNPAGHHL 154 (236)
Q Consensus 84 ~~~~i~~~g---~i~~L~~lL~~~~-~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~-----~~~~~~~~a 154 (236)
--..+-+.. .+...+..+.... +-.+.....++|..-.... .+.....+..++..+.. ++..+....
T Consensus 79 i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~----~~~~~~~~~~l~~~l~~i~~~~~s~si~~er 154 (372)
T PF12231_consen 79 IVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSP----KIMTSDRVERLLAALHNIKNRFPSKSIISER 154 (372)
T ss_pred HHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCC----cccchhhHHHHHHHHHHhhccCCchhHHHHH
Confidence 544444322 4455555554442 3455555666655433322 23334455555555543 344566777
Q ss_pred HHHHHHHhcCCCChHHHHH-hC-cHHHHHHHhcCCChhhHHHHHHHHHHHHc
Q 044293 155 LSSLAELVQFHGNSTLAVR-AG-AVSELIHLIGSTEAEDLAGTSLAVLNLLA 204 (236)
Q Consensus 155 ~~aL~~L~~~~~~~~~~~~-~g-~i~~lv~ll~~~~~~~~~~~a~~~L~~l~ 204 (236)
+.++.+|.. .....|.+ .+ -+|.++..+-+.. ..++..|..++..+.
T Consensus 155 L~i~~~ll~--q~p~~M~~~~~~W~~~l~~~l~~~~-k~ir~~a~~l~~~~~ 203 (372)
T PF12231_consen 155 LNIYKRLLS--QFPQQMIKHADIWFPILFPDLLSSA-KDIRTKAISLLLEAK 203 (372)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhcc-hHHHHHHHHHHHHHH
Confidence 777777765 33334443 22 4666666665542 455555655555443
No 300
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.59 E-value=1.2e+02 Score=29.61 Aligned_cols=93 Identities=12% Similarity=0.124 Sum_probs=69.3
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHH----HhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCC
Q 044293 7 RETINNCVSRSQSDSYEDQQKALQTLAS----ITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNP 82 (236)
Q Consensus 7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~----l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~ 82 (236)
.+...+...+|.+.+-..|.+++..|.. |+.+.+..-..+- -.-|.++.-+..+++-+...|..++.+++.+.
T Consensus 802 ~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvh---q~W~~vie~~~~k~~L~v~~a~~~i~~m~~~s 878 (1014)
T KOG4524|consen 802 LKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVH---QTWPSVIECLLCKDPLIVQRAFSCIEQMGKYS 878 (1014)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHH---hhhhHHHHHHhcCchHHHHHHHHHHHHHHHHh
Confidence 5566677788889999999999999864 4444444445444 35788888888999999999999999998875
Q ss_pred ch--hHHhhhcccHHHHHHHHhc
Q 044293 83 DL--KQSLASMETIYRLNWIIQS 103 (236)
Q Consensus 83 ~~--~~~i~~~g~i~~L~~lL~~ 103 (236)
.. +..+. .+.+|.+-.+++.
T Consensus 879 gDFv~sR~l-~dvlP~l~~~~~~ 900 (1014)
T KOG4524|consen 879 GDFVASRFL-EDVLPWLKHLCQD 900 (1014)
T ss_pred hhHHHHHHH-HHHHHHHHHHHHH
Confidence 43 44554 4688888877764
No 301
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=51.50 E-value=2e+02 Score=26.42 Aligned_cols=102 Identities=13% Similarity=0.029 Sum_probs=49.6
Q ss_pred cHHHHHHHHhccC---CHHHHHHHHHHHHHhc----ccchhhhhhcccCcHHHHHHhhcC----CCcHHHHHHHHHHHHH
Q 044293 93 TIYRLNWIIQSSS---SQETVKLASSLICSLA----MLDKNKARFGVAGTVQVLVKAVSA----PSNPAGHHLLSSLAEL 161 (236)
Q Consensus 93 ~i~~L~~lL~~~~---~~~~~~~a~~~L~~Ls----~~~~~~~~i~~~g~i~~Lv~lL~~----~~~~~~~~a~~aL~~L 161 (236)
.+..+..++++.. ...++..|..++..+. .....+........++.+.+.|.. .+...+...+++|+|+
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~ 473 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA 473 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence 4455666666431 3445555555555443 332222111123466666666643 3344456667777776
Q ss_pred hcCCCChHHHHHhCcHHHHHHHhc-CC-ChhhHHHHHHHHHHHHc
Q 044293 162 VQFHGNSTLAVRAGAVSELIHLIG-ST-EAEDLAGTSLAVLNLLA 204 (236)
Q Consensus 162 ~~~~~~~~~~~~~g~i~~lv~ll~-~~-~~~~~~~~a~~~L~~l~ 204 (236)
... ..++.+...+. +. ....++..|+.+|..++
T Consensus 474 g~~----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a 508 (574)
T smart00638 474 GHP----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLA 508 (574)
T ss_pred CCh----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHH
Confidence 542 22333333333 11 12345666666666654
No 302
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=51.35 E-value=1.3e+02 Score=24.48 Aligned_cols=73 Identities=16% Similarity=0.167 Sum_probs=42.9
Q ss_pred ccCcHHHHHHhhcCCCcH--------HHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCC-hhhHHHHHHHHHHH
Q 044293 132 VAGTVQVLVKAVSAPSNP--------AGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTE-AEDLAGTSLAVLNL 202 (236)
Q Consensus 132 ~~g~i~~Lv~lL~~~~~~--------~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~-~~~~~~~a~~~L~~ 202 (236)
+..++|+++++++.++.. +.+.--++|+.++ .|-++.+-+++.+.+ +.=++-.|+++|..
T Consensus 71 e~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~-----------~G~~~~L~~li~~~~~~~yvR~aa~~aL~~ 139 (249)
T PF06685_consen 71 EERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVG-----------DGDIEPLKELIEDPDADEYVRMAAISALAF 139 (249)
T ss_pred hhhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHh-----------CCCHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 467899999999876532 2233333444433 355666666666653 22244567777776
Q ss_pred HcC-ChhhHHHHHh
Q 044293 203 LAR-FDEGMIALTK 215 (236)
Q Consensus 203 l~~-~~~~~~~i~~ 215 (236)
++. ++..|+.+++
T Consensus 140 l~~~~~~~Re~vi~ 153 (249)
T PF06685_consen 140 LVHEGPISREEVIQ 153 (249)
T ss_pred HHHcCCCCHHHHHH
Confidence 663 4566666655
No 303
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=50.90 E-value=59 Score=24.36 Aligned_cols=81 Identities=16% Similarity=0.133 Sum_probs=53.8
Q ss_pred cccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCCChHHH-HHhCc-HHHHHH-HhcCCC-hhhHHHHHHHHHHHHcCC
Q 044293 131 GVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLA-VRAGA-VSELIH-LIGSTE-AEDLAGTSLAVLNLLARF 206 (236)
Q Consensus 131 ~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~-~~~g~-i~~lv~-ll~~~~-~~~~~~~a~~~L~~l~~~ 206 (236)
.+....+.|++.+.+.++.+...+++.+..+.... +..+ .+.++ ++.++. ++.... ....++.++.++..++.+
T Consensus 70 lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~--~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~ 147 (168)
T PF12783_consen 70 LKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRF--RSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELCKD 147 (168)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhC
Confidence 34667788888888877888888999988887532 2222 23333 444444 555432 235678899999999998
Q ss_pred hhhHHHH
Q 044293 207 DEGMIAL 213 (236)
Q Consensus 207 ~~~~~~i 213 (236)
|..-..+
T Consensus 148 p~~l~~l 154 (168)
T PF12783_consen 148 PQFLVDL 154 (168)
T ss_pred hhHHHHH
Confidence 8654443
No 304
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=50.76 E-value=85 Score=22.05 Aligned_cols=72 Identities=14% Similarity=0.102 Sum_probs=47.8
Q ss_pred HHhHHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCC
Q 044293 6 VRETINNCVSRSQ-SDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNP 82 (236)
Q Consensus 6 ~~~~i~~lv~~L~-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~ 82 (236)
+...+|.+.+.|+ +..+|.+..++..+..++...+-. ..+.+ ..++.++.-...... .+.++.+|..++..-
T Consensus 4 l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~-~~~l~--~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 4 LPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLS-DEVLN--ALMESILKNWTQETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCc-HHHHH--HHHHHHHhccccchh--HHHHHHHHHHHHHcc
Confidence 4567888888898 777888998999999998774433 33333 355555555444333 366777777776543
No 305
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=50.73 E-value=1.3e+02 Score=24.14 Aligned_cols=112 Identities=15% Similarity=0.129 Sum_probs=72.7
Q ss_pred hcccHHHHHHHHhccC------------CHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCC-----------
Q 044293 90 SMETIYRLNWIIQSSS------------SQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAP----------- 146 (236)
Q Consensus 90 ~~g~i~~L~~lL~~~~------------~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~----------- 146 (236)
..-++..|+...++.. +..-....+..+..|...++....+.+.+.++-+...|..-
T Consensus 49 ~~kF~kRLl~FyrP~~~rfs~~~~~~~~~~~y~~vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~ 128 (226)
T PF14666_consen 49 STKFFKRLLSFYRPFKYRFSNLDLNTKNNQKYVRVGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDP 128 (226)
T ss_pred cChHHHHHHHhcCCccccccccccccccchHHHHHHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHHhhhcCCccccc
Confidence 3456666666555321 23344456677777877777666666788888888777543
Q ss_pred --CcHHH-----HHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHc
Q 044293 147 --SNPAG-----HHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLA 204 (236)
Q Consensus 147 --~~~~~-----~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~ 204 (236)
++.-. ..=...|+.+|.++.+.+.+-+.|.+..+..+....+..++... ++.+|-
T Consensus 129 lfs~~~l~~tl~~~Yf~~IG~lS~~~~Gl~lLe~~~if~~l~~i~~~~~~~~l~kl---il~~LD 190 (226)
T PF14666_consen 129 LFSPQRLSTTLSRGYFLFIGVLSSTPNGLKLLERWNIFTMLYHIFSLSSRDDLLKL---ILSSLD 190 (226)
T ss_pred ccCHHHHHhhHHHHHHHHHHHHhCChhHHHHHHHCCHHHHHHHHHccCchHHHHHH---HHhhCC
Confidence 11111 22235678899999999999999999999999987643344333 555553
No 306
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=50.60 E-value=1.9e+02 Score=26.06 Aligned_cols=108 Identities=19% Similarity=0.183 Sum_probs=60.2
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC---ChHHHHHHHhccCcHHHHHhhccC-CChHHHHHHHHHHHhh---CC
Q 044293 8 ETINNCVSRSQSDSYEDQQKALQTLASITRV---SPQYRSLLAQTDGAISTLLGLSKS-SSPIIRTLSLSILLNL---SL 80 (236)
Q Consensus 8 ~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~---~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~l---~~ 80 (236)
+.|+.+++.+. .+.+..--++.+. +.. ..+..+++.+. +.|+.|+++|+. .+++.+.+|+.+|+.+ +.
T Consensus 21 ~~v~~llkHI~--~~~ImDlLLklIs--~d~~~~~~~ilewL~~q-~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~ 95 (475)
T PF04499_consen 21 NFVDNLLKHID--TPAIMDLLLKLIS--TDKPESPTGILEWLAEQ-NLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISR 95 (475)
T ss_pred cHHHHHHHhcC--CcHHHHHHHHHHc--cCcccchHHHHHHHHHh-CHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 34555555553 3334443333333 111 22456777787 999999999974 4678899998887765 22
Q ss_pred CC---------ch--hHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHh
Q 044293 81 NP---------DL--KQSLASMETIYRLNWIIQSSSSQETVKLASSLICSL 120 (236)
Q Consensus 81 ~~---------~~--~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~L 120 (236)
+. .+ -..+.+...+..|++.+-.+.......++++++-.|
T Consensus 96 n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieL 146 (475)
T PF04499_consen 96 NAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIEL 146 (475)
T ss_pred ccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHH
Confidence 11 01 234555667777776554211223444455444443
No 307
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=50.54 E-value=1.8e+02 Score=28.23 Aligned_cols=35 Identities=6% Similarity=0.015 Sum_probs=28.6
Q ss_pred chHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 044293 3 APRVRETINNCVSRSQSDSYEDQQKALQTLASITR 37 (236)
Q Consensus 3 ~~~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~ 37 (236)
++..-..+|.++.+|+.++.-+..+|+.++..+..
T Consensus 493 ~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~ 527 (960)
T KOG1992|consen 493 KEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLT 527 (960)
T ss_pred hHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccc
Confidence 34456789999999999999999999999976543
No 308
>COG5330 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.43 E-value=1.3e+02 Score=26.02 Aligned_cols=73 Identities=19% Similarity=0.092 Sum_probs=55.2
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCC
Q 044293 7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNP 82 (236)
Q Consensus 7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~ 82 (236)
+-.+..++.+++..+...+..++..+.......+-++..+.+ .-+.+..|+....++++..++.+|.++-.-|
T Consensus 6 ~~~~~~~i~~~~~a~~~eR~~~A~~l~~~~~~~~~sr~d~~~---~~~l~~~Ll~d~s~~vrr~lA~aL~~~~~~P 78 (364)
T COG5330 6 QSTDQDLIRLLEEASSGERALAARVLAFASLQRPLSREDMRQ---FEDLARPLLDDSSEEVRRELAAALAQCETAP 78 (364)
T ss_pred hhhHHHHHHHhcCCChhHHHHHHHHHHHHHhcCcccHHHHHH---HHHHHHHHhhCccHHHHHHHHHHHHhCCcCC
Confidence 557788899999888888988888887777665546666654 3556667777788899999999998865544
No 309
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=48.74 E-value=1.2e+02 Score=31.58 Aligned_cols=109 Identities=19% Similarity=0.194 Sum_probs=67.9
Q ss_pred CcHHHHHhh----ccCCChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchh
Q 044293 51 GAISTLLGL----SKSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKN 126 (236)
Q Consensus 51 g~i~~Lv~l----L~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~ 126 (236)
+.++.++.+ |.+.++.++..+......+-..-+. ..+...+..|+.++-++ +..-...|..+|..|+...
T Consensus 431 ~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds---~~qqeVv~~Lvthi~sg-~~~ev~~aL~vL~~L~~~~-- 504 (1426)
T PF14631_consen 431 DYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDS---YCQQEVVGALVTHIGSG-NSQEVDAALDVLCELAEKN-- 504 (1426)
T ss_dssp TSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-H---HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccc---hhHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHhcc--
Confidence 566666654 5677888888877776654333221 22344778888888777 5555678899999998643
Q ss_pred hhhhcc-cCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCC
Q 044293 127 KARFGV-AGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFH 165 (236)
Q Consensus 127 ~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~ 165 (236)
...+.. +..|..++..+..-+..-.+.....|..++...
T Consensus 505 ~~~l~~fa~~l~giLD~l~~Ls~~qiR~lf~il~~La~~~ 544 (1426)
T PF14631_consen 505 PSELQPFATFLKGILDYLDNLSLQQIRKLFDILCTLAFSD 544 (1426)
T ss_dssp HHHHHHTHHHHHGGGGGGGG--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 333333 455666666666656666677777777777543
No 310
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=48.35 E-value=3.4e+02 Score=28.35 Aligned_cols=108 Identities=15% Similarity=0.147 Sum_probs=68.8
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHh-hCCCCchh
Q 044293 7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLN-LSLNPDLK 85 (236)
Q Consensus 7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~-l~~~~~~~ 85 (236)
...+..++..|..+...+|.+|+++|..+..-++... ..+++-..+-.-+......+|+.|+..+.. +..+++.-
T Consensus 815 D~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL----~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~ 890 (1692)
T KOG1020|consen 815 DPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVL----SRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELI 890 (1692)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhh----cCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHH
Confidence 3456677778888888999999999999988766542 111222233344445577889999998884 34444443
Q ss_pred HHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccc
Q 044293 86 QSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLD 124 (236)
Q Consensus 86 ~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~ 124 (236)
....+. ..-.+++.| ..+|+++...++.+|...
T Consensus 891 ~qyY~~----i~erIlDtg--vsVRKRvIKIlrdic~e~ 923 (1692)
T KOG1020|consen 891 FQYYDQ----IIERILDTG--VSVRKRVIKILRDICEET 923 (1692)
T ss_pred HHHHHH----HHhhcCCCc--hhHHHHHHHHHHHHHHhC
Confidence 333321 112233443 688899999999887643
No 311
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=47.30 E-value=1.6e+02 Score=24.17 Aligned_cols=63 Identities=14% Similarity=0.184 Sum_probs=34.8
Q ss_pred HHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCC
Q 044293 5 RVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSL 80 (236)
Q Consensus 5 ~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~ 80 (236)
+..+.+..|...|+..++..+ ..... ++ ...+.+. +.||.|+.. .+++++-..++.+|.+|..
T Consensus 10 dcl~~LkdL~r~lr~dd~~~~-~v~r~---lg------~~~iv~~-DLiPiL~~~--~~~~~l~~~~l~LLV~LT~ 72 (266)
T PF04821_consen 10 DCLECLKDLKRFLRRDDEDQR-DVRRQ---LG------EWNIVQK-DLIPILISY--KDDDKLFLACLRLLVNLTW 72 (266)
T ss_pred hHHHHHHHHHHHHHHhCcchH-HHHHH---HH------Hhchhhh-hHHHHHHhc--cCchHHHHHHHHHHHHhCC
Confidence 445667777777765554333 11111 11 1113343 556655543 2367777888888888876
No 312
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=47.25 E-value=39 Score=22.43 Aligned_cols=53 Identities=8% Similarity=0.126 Sum_probs=37.5
Q ss_pred HHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChhhHHHHHhcCCcHHHHHHHhhC
Q 044293 172 VRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGMIALTKTDQIVSLMVDVLKG 229 (236)
Q Consensus 172 ~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~~i~~lv~~l~~ 229 (236)
.+...+.++..++....+.++++..+.++.++..... .-..+|. +.+..+++.
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~---~~i~SGW--~~if~il~~ 66 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRG---ENIKSGW--KVIFSILRA 66 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhH---HHHHhcc--HHHHHHHHH
Confidence 4567788888888665567899999999988875433 3345564 777776653
No 313
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=46.83 E-value=83 Score=20.84 Aligned_cols=65 Identities=11% Similarity=0.149 Sum_probs=44.8
Q ss_pred hcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcC----CCcHHHHHHHHHH
Q 044293 90 SMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSA----PSNPAGHHLLSSL 158 (236)
Q Consensus 90 ~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~----~~~~~~~~a~~aL 158 (236)
+...+.|+..++.+..+.++++....++..+..... ..+ ..| =+.++.++.. ++......|..++
T Consensus 15 Q~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~--~~i-~SG-W~~if~il~~aa~~~~e~lv~~af~~~ 83 (86)
T PF09324_consen 15 QKDFLKPFEYIMSNNPSIDVRELILECILQILQSRG--ENI-KSG-WKVIFSILRAAAKDNDESLVRLAFQIV 83 (86)
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhH--HHH-Hhc-cHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 567889999998766578999999999999887553 222 234 5777776653 3445556555544
No 314
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=46.78 E-value=76 Score=24.58 Aligned_cols=72 Identities=11% Similarity=-0.008 Sum_probs=49.9
Q ss_pred CcHHHHHhhccCCChHHHHHHHHHHHhhCCC-CchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhccc
Q 044293 51 GAISTLLGLSKSSSPIIRTLSLSILLNLSLN-PDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAML 123 (236)
Q Consensus 51 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~ 123 (236)
-.+|.+++=|+..+...+-.|......+-.. ...|..-+-...|.++-..|++. ++++...++.+|..|...
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr-~~~V~~~~L~~Lq~Lv~~ 110 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTR-DPEVFCATLKALQQLVTS 110 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHh
Confidence 3566666666666666666666666666555 33333333466788888888888 899999999999998554
No 315
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=46.66 E-value=2.2e+02 Score=25.52 Aligned_cols=66 Identities=11% Similarity=0.158 Sum_probs=32.7
Q ss_pred CcHHHHHHhhcC--CCcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCC-----ChhhHHHHHHHHHHHHcC
Q 044293 134 GTVQVLVKAVSA--PSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGST-----EAEDLAGTSLAVLNLLAR 205 (236)
Q Consensus 134 g~i~~Lv~lL~~--~~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~-----~~~~~~~~a~~~L~~l~~ 205 (236)
+.++.++..|.+ ........+-.++.||+.++-+... +..|.++|.+. ....+...|+..+..+..
T Consensus 213 ~sl~~~i~vLCsi~~~~~l~~~~w~~m~nL~~S~~g~~~------i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~ 285 (464)
T PF11864_consen 213 ESLSPCIEVLCSIVNSVSLCKPSWRTMRNLLKSHLGHSA------IRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLW 285 (464)
T ss_pred HHHHHHHHHHhhHhcccccchhHHHHHHHHHcCccHHHH------HHHHHHHHcccCccccccHHHHhhHHHHHHHHHh
Confidence 334444444443 1123445566677777765544333 34566666221 123344566666666553
No 316
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=45.50 E-value=1.3e+02 Score=26.82 Aligned_cols=133 Identities=13% Similarity=0.158 Sum_probs=69.3
Q ss_pred ccHHHHHHHHhcc---CCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhh----cCC-CcHHHHHHHHHHHHHhc
Q 044293 92 ETIYRLNWIIQSS---SSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAV----SAP-SNPAGHHLLSSLAELVQ 163 (236)
Q Consensus 92 g~i~~L~~lL~~~---~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL----~~~-~~~~~~~a~~aL~~L~~ 163 (236)
..+..|..++..+ +++-+.+...+++.-+...- . .+. ...++.|+.++ +++ ||.--.+...+++.|..
T Consensus 26 ~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~--~-p~~-~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir 101 (435)
T PF03378_consen 26 QLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDI--L-PIA-VEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIR 101 (435)
T ss_dssp HHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTT--G-GGH-HHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHH--H-HHH-HHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHH
Confidence 4566666666653 24445555555544333221 1 111 23344444444 344 44444444455544433
Q ss_pred ----CCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC-Ch-----hh---------HHHHHhcCCcHHHHH
Q 044293 164 ----FHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR-FD-----EG---------MIALTKTDQIVSLMV 224 (236)
Q Consensus 164 ----~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~-~~-----~~---------~~~i~~~g~~i~~lv 224 (236)
.+.....-.+...+|.+..+|..+ -.+....+..+|..|.. ++ +. ...+|+..|-+|.++
T Consensus 102 ~~~~~~~~~v~~~E~~L~P~f~~ILq~d-V~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalv 180 (435)
T PF03378_consen 102 FVCEADPEAVSQFEEALFPPFQEILQQD-VQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPALV 180 (435)
T ss_dssp HS-GGGHH---HHHHHHHHHHHHHHHTT--TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHH
T ss_pred hccCCChhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHH
Confidence 222222345778899999999875 35677777777776642 22 11 223666566689999
Q ss_pred HHhhC
Q 044293 225 DVLKG 229 (236)
Q Consensus 225 ~~l~~ 229 (236)
++|+.
T Consensus 181 rLL~a 185 (435)
T PF03378_consen 181 RLLQA 185 (435)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98863
No 317
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=45.23 E-value=2.6e+02 Score=26.66 Aligned_cols=57 Identities=21% Similarity=0.132 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhhCCCCch--hHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccc
Q 044293 67 IRTLSLSILLNLSLNPDL--KQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLD 124 (236)
Q Consensus 67 ~~~~a~~~L~~l~~~~~~--~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~ 124 (236)
+......+|..++..+.. +..+.+.+....++.++-++ ++++.+.|...|......+
T Consensus 497 ~~~~~~~il~rls~~~~~~L~~l~~d~~~~~~i~s~lfsp-~~~l~qaA~~llk~~~d~~ 555 (727)
T PF12726_consen 497 ITDLISQILERLSDFDPSHLKELLSDPDAAQAIWSLLFSP-DDDLYQAAQDLLKQAFDVD 555 (727)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHcCcchhhHHHhheeCC-ChHHHHHHHHHHHHHhcCC
Confidence 345566778888877643 45555789999999999998 8999999999999887643
No 318
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=45.19 E-value=3.8e+02 Score=28.00 Aligned_cols=113 Identities=19% Similarity=0.155 Sum_probs=63.2
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhH
Q 044293 7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQ 86 (236)
Q Consensus 7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~ 86 (236)
++.|..||..+-+++......|+..|..++..++..-..+. ..|..+++.+++-+..--+....+|+.++..+....
T Consensus 472 qeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~~~l~~fa---~~l~giLD~l~~Ls~~qiR~lf~il~~La~~~~~~~ 548 (1426)
T PF14631_consen 472 QEVVGALVTHIGSGNSQEVDAALDVLCELAEKNPSELQPFA---TFLKGILDYLDNLSLQQIRKLFDILCTLAFSDSSSS 548 (1426)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHHHHHTH---HHHHGGGGGGGG--HHHHHHHHHHHHHHHHHHSS--
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccHHHHHHHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCcccc
Confidence 67888999999777777777899999999986554333332 346666666665554444556778887776542211
Q ss_pred HhhhcccHHHHHHHHhccCCHHHHHH----HHHHHHHhccc
Q 044293 87 SLASMETIYRLNWIIQSSSSQETVKL----ASSLICSLAML 123 (236)
Q Consensus 87 ~i~~~g~i~~L~~lL~~~~~~~~~~~----a~~~L~~Ls~~ 123 (236)
.-+..+..-.+-+.|.+. +...+.. |+..+..++..
T Consensus 549 s~i~del~ivIRKQLss~-~~~~K~~GIIGav~~i~~la~~ 588 (1426)
T PF14631_consen 549 SSIQDELHIVIRKQLSSS-NPKYKRIGIIGAVMMIKHLAAK 588 (1426)
T ss_dssp -HHHHHHHHHHHHHHT-S-SHHHHHHHHHHHHHHHHHTT--
T ss_pred hhhHHHHHHHHHHhhcCC-cHHHHHHhHHHHHHHHHHHHHH
Confidence 122233333344556655 5666643 44555566554
No 319
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=44.95 E-value=39 Score=19.05 Aligned_cols=24 Identities=13% Similarity=0.141 Sum_probs=16.8
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHH
Q 044293 8 ETINNCVSRSQSDSYEDQQKALQT 31 (236)
Q Consensus 8 ~~i~~lv~~L~~~~~~~~~~a~~~ 31 (236)
.....+...+.++++.+|..|+..
T Consensus 18 ~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 18 DVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHH
Confidence 445556666778888888877664
No 320
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.83 E-value=1.7e+02 Score=24.88 Aligned_cols=106 Identities=18% Similarity=0.122 Sum_probs=64.2
Q ss_pred HHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchh
Q 044293 6 VRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLK 85 (236)
Q Consensus 6 ~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~ 85 (236)
..++|..+++-+++....+-+.|+.++..+.... +.....+.++.+..|..--..++..+++.|-.+|..+..+-.-.
T Consensus 127 L~~vii~vvkslKNlRS~VsraA~~t~~difs~l--n~~i~~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~ 204 (334)
T KOG2933|consen 127 LHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSL--NNSIDQELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ 204 (334)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH
Confidence 3568888999999888888888888888776542 11211122233333333333345677888888888776654332
Q ss_pred HHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHh
Q 044293 86 QSLASMETIYRLNWIIQSSSSQETVKLASSLICSL 120 (236)
Q Consensus 86 ~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~L 120 (236)
. .++.|+-.+++. ++-++..++....++
T Consensus 205 ~------~L~~L~~~~~~~-n~r~r~~a~~~~~~~ 232 (334)
T KOG2933|consen 205 K------LLRKLIPILQHS-NPRVRAKAALCFSRC 232 (334)
T ss_pred H------HHHHHHHHHhhh-chhhhhhhhcccccc
Confidence 2 344555567766 667776666554443
No 321
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=44.81 E-value=14 Score=18.55 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhc
Q 044293 151 GHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIG 185 (236)
Q Consensus 151 ~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~ 185 (236)
+..|+++|..+.. ..++|.|++.|+
T Consensus 2 R~~Aa~aLg~igd----------~~ai~~L~~~L~ 26 (27)
T PF03130_consen 2 RRAAARALGQIGD----------PRAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHGGG-S----------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC----------HHHHHHHHHHhc
Confidence 4556666655544 345566666553
No 322
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.57 E-value=1.7e+02 Score=27.90 Aligned_cols=72 Identities=15% Similarity=0.242 Sum_probs=46.7
Q ss_pred chHHHhHHHHHHHHh---------cCCCHHHHHHHHHHHHHHhcC-Ch----HHHHHHHhccCcHHHHHhhccCCChHHH
Q 044293 3 APRVRETINNCVSRS---------QSDSYEDQQKALQTLASITRV-SP----QYRSLLAQTDGAISTLLGLSKSSSPIIR 68 (236)
Q Consensus 3 ~~~~~~~i~~lv~~L---------~~~~~~~~~~a~~~L~~l~~~-~~----~~~~~i~~~~g~i~~Lv~lL~~~~~~~~ 68 (236)
++-++++++.++-.| +..+..+|..|+..+.++--- ++ +-...+.+ .-...|-++|+++-|.+|
T Consensus 160 qkk~~qgVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~--kQf~~l~~LL~d~~p~VR 237 (1005)
T KOG1949|consen 160 QKKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQ--KQFEELYSLLEDPYPMVR 237 (1005)
T ss_pred HHHHhhhHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHH--HHHHHHHHHhcCCCchHH
Confidence 344566666665554 457888999998888776421 11 22333333 247888899999999998
Q ss_pred HHHHHHHH
Q 044293 69 TLSLSILL 76 (236)
Q Consensus 69 ~~a~~~L~ 76 (236)
..|..-++
T Consensus 238 S~a~~gv~ 245 (1005)
T KOG1949|consen 238 STAILGVC 245 (1005)
T ss_pred HHHHHHHH
Confidence 87665443
No 323
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=44.03 E-value=1.7e+02 Score=23.50 Aligned_cols=141 Identities=16% Similarity=0.152 Sum_probs=88.7
Q ss_pred HHHHHHHHhcC------------C-CHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCC-----------
Q 044293 9 TINNCVSRSQS------------D-SYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSS----------- 64 (236)
Q Consensus 9 ~i~~lv~~L~~------------~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~----------- 64 (236)
.+.+|+.+.+- . ++.-..-++..+..|...+++. ..+.+. +.++.+.+.|..-+
T Consensus 52 F~kRLl~FyrP~~~rfs~~~~~~~~~~~y~~vGc~L~~~Ll~~~eG~-~~l~~~-~ll~qia~~L~~~d~~~g~~~~~~l 129 (226)
T PF14666_consen 52 FFKRLLSFYRPFKYRFSNLDLNTKNNQKYVRVGCQLLETLLSSPEGI-KYLSES-KLLPQIAECLAQVDPMSGITAHDPL 129 (226)
T ss_pred HHHHHHHhcCCccccccccccccccchHHHHHHHHHHHHHHcCcHHH-HHHHHc-cHHHHHHHHHHHHhhhcCCcccccc
Confidence 47778877741 0 1223344667777777765444 444476 89999988875431
Q ss_pred --hH-HH----HHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHH
Q 044293 65 --PI-IR----TLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQ 137 (236)
Q Consensus 65 --~~-~~----~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~ 137 (236)
++ +. ..=...|..++.++.+...+-+.+....+..++...+.++.... +|.+|-... .|-..
T Consensus 130 fs~~~l~~tl~~~Yf~~IG~lS~~~~Gl~lLe~~~if~~l~~i~~~~~~~~l~kl---il~~LDY~~--------~~~~R 198 (226)
T PF14666_consen 130 FSPQRLSTTLSRGYFLFIGVLSSTPNGLKLLERWNIFTMLYHIFSLSSRDDLLKL---ILSSLDYSV--------DGHPR 198 (226)
T ss_pred cCHHHHHhhHHHHHHHHHHHHhCChhHHHHHHHCCHHHHHHHHHccCchHHHHHH---HHhhCCCCC--------ccHHH
Confidence 11 11 12234777899999998888889999999999987633333332 445552221 23333
Q ss_pred HHH-HhhcCCCcHHHHHHHHHHHHHh
Q 044293 138 VLV-KAVSAPSNPAGHHLLSSLAELV 162 (236)
Q Consensus 138 ~Lv-~lL~~~~~~~~~~a~~aL~~L~ 162 (236)
.++ +.|.+++..++..|..-|..+.
T Consensus 199 ~iLsKaLt~~s~~iRl~aT~~L~~ll 224 (226)
T PF14666_consen 199 IILSKALTSGSESIRLYATKHLRVLL 224 (226)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 333 6677788888999988887764
No 324
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.62 E-value=2.6e+02 Score=27.26 Aligned_cols=159 Identities=14% Similarity=0.113 Sum_probs=82.9
Q ss_pred CChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccc-h--------------hh
Q 044293 63 SSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLD-K--------------NK 127 (236)
Q Consensus 63 ~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~-~--------------~~ 127 (236)
+.+.++.-++.-|.++......+..+...+.+....+.|++. |.=+-.+|...+..||.-. + ++
T Consensus 739 ~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lkde-dsyvyLnaI~gv~~Lcevy~e~il~dL~e~Y~s~k~k 817 (982)
T KOG4653|consen 739 DQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDE-DSYVYLNAIRGVVSLCEVYPEDILPDLSEEYLSEKKK 817 (982)
T ss_pred CcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhccc-CceeeHHHHHHHHHHHHhcchhhHHHHHHHHHhcccC
Confidence 334556677777888777666666777888999999999987 5656666666444444321 0 00
Q ss_pred hh---hcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHh----cCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHH
Q 044293 128 AR---FGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELV----QFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVL 200 (236)
Q Consensus 128 ~~---i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~----~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L 200 (236)
.+ ...-| +++.++++.-.+-+..+-. .|.+.+ ..+++.-++-..+.+..+.+++...- .+....+...+
T Consensus 818 ~~~d~~lkVG--Eai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~v-sd~~~ev~~~I 893 (982)
T KOG4653|consen 818 LQTDYRLKVG--EAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQV-SDFFHEVLQLI 893 (982)
T ss_pred CCccceehHH--HHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhh-hHHHHHHHHHH
Confidence 00 01122 5555555543332222111 222222 24455555556666777777765431 22444444444
Q ss_pred HHHcCChhhHHHHHhcCCcHHHHHHHhhC
Q 044293 201 NLLARFDEGMIALTKTDQIVSLMVDVLKG 229 (236)
Q Consensus 201 ~~l~~~~~~~~~i~~~g~~i~~lv~~l~~ 229 (236)
.++... ++...++++ + +..+..++++
T Consensus 894 l~l~~~-d~s~~vRRa-A-v~li~~lL~~ 919 (982)
T KOG4653|consen 894 LSLETT-DGSVLVRRA-A-VHLLAELLNG 919 (982)
T ss_pred HHHHcc-CCchhhHHH-H-HHHHHHHHhc
Confidence 444433 333334443 3 4556556553
No 325
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=43.54 E-value=1.3e+02 Score=27.93 Aligned_cols=122 Identities=8% Similarity=-0.034 Sum_probs=65.3
Q ss_pred hHHHHHHHH-hcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhcc-CCChHHHHHHHHHHHhhCCCCchh
Q 044293 8 ETINNCVSR-SQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSK-SSSPIIRTLSLSILLNLSLNPDLK 85 (236)
Q Consensus 8 ~~i~~lv~~-L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~~~~ 85 (236)
+.|..++.. .++++.++++.|+.+|...|..++ +.++..+++|+ +.++.+|-..+-+|.-.|.....+
T Consensus 551 ~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~----------~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~ 620 (926)
T COG5116 551 GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR----------DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK 620 (926)
T ss_pred hhHhhhheeecccCchHHHHHHHHheeeeEecCc----------chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH
Confidence 345555555 456778889989888888887642 23344445544 456777776677776544443322
Q ss_pred HHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcc-cCcHHHHHHhhcCCC
Q 044293 86 QSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGV-AGTVQVLVKAVSAPS 147 (236)
Q Consensus 86 ~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~ 147 (236)
. .+..|-.+.... +.-+++.|+-++.-+..... -+.--+ .+.+..+-+++....
T Consensus 621 ~------a~diL~~L~~D~-~dfVRQ~AmIa~~mIl~Q~n-~~Lnp~v~~I~k~f~~vI~~Kh 675 (926)
T COG5116 621 V------ATDILEALMYDT-NDFVRQSAMIAVGMILMQCN-PELNPNVKRIIKKFNRVIVDKH 675 (926)
T ss_pred H------HHHHHHHHhhCc-HHHHHHHHHHHHHHHHhhcC-cccChhHHHHHHHHHHHHhhhh
Confidence 2 222333344443 45566666666554322111 111111 455666666665543
No 326
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=43.35 E-value=1e+02 Score=31.32 Aligned_cols=73 Identities=16% Similarity=0.085 Sum_probs=48.9
Q ss_pred chHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHh
Q 044293 3 APRVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLN 77 (236)
Q Consensus 3 ~~~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ 77 (236)
+..+..+||.|-..|.+++.++|.+|+..+..+.... . .+..-..+.....+++-+...+.++|-.++....+
T Consensus 254 p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~-~-~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~ 326 (1266)
T KOG1525|consen 254 PQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDK-D-SQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQ 326 (1266)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcc-h-hhhcccchHHHHHHHHHhccCChhhhhhHHHHhHH
Confidence 4456789999999999999999999999998887652 1 12221222444445555556666776666665554
No 327
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=42.91 E-value=2.8e+02 Score=25.75 Aligned_cols=210 Identities=16% Similarity=0.091 Sum_probs=108.0
Q ss_pred CchHH--HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccC------------CChHH
Q 044293 2 SAPRV--RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKS------------SSPII 67 (236)
Q Consensus 2 ~~~~~--~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~------------~~~~~ 67 (236)
|.||. ...++.+|+.++.++++.+..++..|....+.+... + -.+|.=+++|+. .++.-
T Consensus 39 seed~~lk~dLellVeriqd~d~~l~~~sLn~LkeviksStSs------m-tavpkplkfLrp~y~dl~~iydkw~~~n~ 111 (881)
T COG5110 39 SEEDAMLKGDLELLVERIQDPDIDLQNNSLNMLKEVIKSSTSS------M-TAVPKPLKFLRPNYLDLLEIYDKWLEGNK 111 (881)
T ss_pred chhhhhhcccHHHHHHHhhCCChHHHHHHHHHHHHHHhccccc------c-ccCCchhhhcCCCcchHHHHHhhccCcch
Confidence 45554 457889999999999999999999998777654221 1 122332233332 23444
Q ss_pred HHHHHHHHHhhCCCCc--hhHHhhhc---c-----------cHHHHHHHHhc----------cCCHHHHHHHHHHHHHhc
Q 044293 68 RTLSLSILLNLSLNPD--LKQSLASM---E-----------TIYRLNWIIQS----------SSSQETVKLASSLICSLA 121 (236)
Q Consensus 68 ~~~a~~~L~~l~~~~~--~~~~i~~~---g-----------~i~~L~~lL~~----------~~~~~~~~~a~~~L~~Ls 121 (236)
.+.-+.+|..++.... +|...... | -+..|...+.. ..-.+++..+..++-.+-
T Consensus 112 K~~LaDilS~l~m~yse~~kh~sL~YRl~g~i~D~~~WGHeYvrhLa~eI~ev~n~~~e~daps~~dt~~l~l~ivpffl 191 (881)
T COG5110 112 KRWLADILSALCMVYSENGKHKSLAYRLEGNIIDLKEWGHEYVRHLAGEIAEVKNDQNEMDAPSFADTRDLGLEIVPFFL 191 (881)
T ss_pred hhHHHHHHHHHeeecccccchhhHHHHhhcccCCHHHHHHHHHHHHHHHHHHHhcchhhccCCchhHHHHHHHHHhHHHH
Confidence 5566777777766432 23322111 1 12222222211 001356666666655443
Q ss_pred ccc---hhhhhhcccCcHHHHHHhhcCCCcH-HHHHHH---------------HHHH--HHhcCCCCh--HHHHHhCcHH
Q 044293 122 MLD---KNKARFGVAGTVQVLVKAVSAPSNP-AGHHLL---------------SSLA--ELVQFHGNS--TLAVRAGAVS 178 (236)
Q Consensus 122 ~~~---~~~~~i~~~g~i~~Lv~lL~~~~~~-~~~~a~---------------~aL~--~L~~~~~~~--~~~~~~g~i~ 178 (236)
.+. +.-..+.+-|+|+.++.+....+.. +..+-. .+.. ++...+-.+ .-.++.+-..
T Consensus 192 kHNaE~dAiDlL~Evg~Iekv~~fVd~~n~~RvclYl~~cv~llp~pedVa~l~ta~~IYlk~~~lt~av~~aiRl~~~~ 271 (881)
T COG5110 192 KHNAEFDAIDLLVEVGGIEKVLDFVDTHNYNRVCLYLEDCVPLLPPPEDVALLETALKIYLKMGDLTRAVVGAIRLQKSK 271 (881)
T ss_pred hcccchHHHHHHHHhcchhhhhhhhcccchhHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhhHHHHHHHHHHhcccHH
Confidence 333 2334456789999999888765432 111100 1100 111111111 1123344444
Q ss_pred HHHHHhcCCChhhHHHHHHHHHHH--HcC--ChhhHHHHHhcCC
Q 044293 179 ELIHLIGSTEAEDLAGTSLAVLNL--LAR--FDEGMIALTKTDQ 218 (236)
Q Consensus 179 ~lv~ll~~~~~~~~~~~a~~~L~~--l~~--~~~~~~~i~~~g~ 218 (236)
.+.+.....+++...++|+.+|.. +.. .++.-+-+...|-
T Consensus 272 ~i~e~~~a~~Dp~~kKQ~~YiLArq~~~~e~~dee~~dil~Ng~ 315 (881)
T COG5110 272 EIIEYVRAIEDPDYKKQCLYILARQNLYYEASDEEEKDILSNGY 315 (881)
T ss_pred HHHHHHHhccChHHHHHHHHHHHhccCCcccCCHHHHHHhcCCc
Confidence 455555554457788999988874 332 2344444555553
No 328
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.67 E-value=39 Score=29.14 Aligned_cols=64 Identities=16% Similarity=0.128 Sum_probs=49.5
Q ss_pred HHHHHHHHhc-CCCChHHHHHhCcHHHHHHHhcCCC-hhhHHHHHHHHHHHHcCC-hhhHHHHHhcC
Q 044293 154 LLSSLAELVQ-FHGNSTLAVRAGAVSELIHLIGSTE-AEDLAGTSLAVLNLLARF-DEGMIALTKTD 217 (236)
Q Consensus 154 a~~aL~~L~~-~~~~~~~~~~~g~i~~lv~ll~~~~-~~~~~~~a~~~L~~l~~~-~~~~~~i~~~g 217 (236)
..+.+++||. ++++..++.+.|+++.+++--.-+| +|=+++-.+.++.+|..+ .++++-+....
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~kme 442 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGKME 442 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhcCC
Confidence 5568899997 6788999999999998887664332 467888889999998865 47887776554
No 329
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=42.56 E-value=92 Score=29.80 Aligned_cols=77 Identities=17% Similarity=0.171 Sum_probs=56.2
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhh-CCCCchh
Q 044293 7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNL-SLNPDLK 85 (236)
Q Consensus 7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l-~~~~~~~ 85 (236)
.+.|+.|..+.+.+=+.++.+++..+..+..+.++. +. ..+..||+-|..++..+-.+|.-.|.+| +.||..|
T Consensus 303 ~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEq-----E~-~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK 376 (988)
T KOG2038|consen 303 FRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQ-----EN-NLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMK 376 (988)
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHH-----HH-HHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcce
Confidence 456666666666777889999999999988876653 33 5677888888887777777777666654 5667666
Q ss_pred HHhh
Q 044293 86 QSLA 89 (236)
Q Consensus 86 ~~i~ 89 (236)
..++
T Consensus 377 ~Vvi 380 (988)
T KOG2038|consen 377 IVVI 380 (988)
T ss_pred eehH
Confidence 5543
No 330
>KOG1791 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.19 E-value=4.3e+02 Score=27.75 Aligned_cols=216 Identities=16% Similarity=0.133 Sum_probs=120.2
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcCChHHH-HHHHhccCcHHHHHhhccCC----ChHHHHHH---HHHHHhhCCCCc
Q 044293 12 NCVSRSQSDSYEDQQKALQTLASITRVSPQYR-SLLAQTDGAISTLLGLSKSS----SPIIRTLS---LSILLNLSLNPD 83 (236)
Q Consensus 12 ~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~-~~i~~~~g~i~~Lv~lL~~~----~~~~~~~a---~~~L~~l~~~~~ 83 (236)
.+..-+++.+++++.-|.++++.+-.+ -+++ +.+.+. -.+..++.+.+++ ++++-.-. ..-...+...|.
T Consensus 1443 ~~F~~lSS~D~~mr~la~~~lqi~~dH-Le~l~ek~~a~-~~ll~L~~l~qng~~e~~~Rl~si~alF~A~~~~ill~Ps 1520 (1758)
T KOG1791|consen 1443 LLFKGLSSDDPSMRKLAYWVLQIFLDH-LENLLEKKQAQ-FNLLYLSCLAQNGSRESDPRLISICALFIAFFSDILLVPS 1520 (1758)
T ss_pred HHhhhhccCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-HHHHHHHHHHHccCcCCCcchhhHHHHHHHHHHHHHcCCc
Confidence 344455678899999998888887665 4553 555544 5677777776654 33321111 111223444441
Q ss_pred --hh---------HHhhhcccHHHHHHHHhccCCHHHHHH---HHHHHHHhcccchhhhhhcccCcHHHHHHhhcCC--C
Q 044293 84 --LK---------QSLASMETIYRLNWIIQSSSSQETVKL---ASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAP--S 147 (236)
Q Consensus 84 --~~---------~~i~~~g~i~~L~~lL~~~~~~~~~~~---a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~--~ 147 (236)
+. ..+.+..++|.+-+.+.+. .++-+.. -...+..--.++.-.+.....+....++....++ +
T Consensus 1521 ~~ly~~In~~L~~s~~vdlq~iP~F~~ffySs-~~e~~t~R~Wvl~LV~~glks~~D~ql~~~~~~~~~~lsf~sS~l~~ 1599 (1758)
T KOG1791|consen 1521 EGLYFPINGLLLSSKIVDLQGIPIFHRFFYSS-VFEHHTEREWVLELVSKGLKSCPDYQLLQIRNIFETLLSFYSSPLAS 1599 (1758)
T ss_pred cccchhHHHHHHhhhhcccCCCccHHHHHHhc-cccccchhhhhHHHHHHHhcCchhhhHHhhcCcceEeehhhcchhHH
Confidence 11 1345667899999999887 4443332 3333332222222233334567777777777664 2
Q ss_pred cHHHHHHHHHHHHHhcCCCChHHHH-HhCcHHHHHHHhcCCC-hhhHHHH-HHHHHHHHcCC--hhhHHHHHhcCCcHHH
Q 044293 148 NPAGHHLLSSLAELVQFHGNSTLAV-RAGAVSELIHLIGSTE-AEDLAGT-SLAVLNLLARF--DEGMIALTKTDQIVSL 222 (236)
Q Consensus 148 ~~~~~~a~~aL~~L~~~~~~~~~~~-~~g~i~~lv~ll~~~~-~~~~~~~-a~~~L~~l~~~--~~~~~~i~~~g~~i~~ 222 (236)
...+.--+.+|.+-...+.....++ ..|...++..++.++. ++-..+. -..++.++-.+ ++.|-......+ +..
T Consensus 1600 ~~S~~LIL~~L~~~Vk~p~~a~~mle~~Gl~sWi~niI~s~~~k~~~~~~l~~~v~~~l~~aewd~~~l~~~~~q~-~~~ 1678 (1758)
T KOG1791|consen 1600 EESKRLILATLQKGVKFPFYAYEMLEVPGLFSWILNIIPSSFLKPVLLKALVISVLKVLWVAEWDDQRLNLGSRQG-IVS 1678 (1758)
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHhcccHHHHHHHhccccccchHHHhhhHHHHHHHHHHhHHHhhhchhhhHHH-HHH
Confidence 2333444555555555655555554 4899999999998863 2333333 56677776655 344433333334 355
Q ss_pred HHHHhhCCc
Q 044293 223 MVDVLKGRS 231 (236)
Q Consensus 223 lv~~l~~~~ 231 (236)
...+++.+.
T Consensus 1679 ~~~l~~i~~ 1687 (1758)
T KOG1791|consen 1679 FLELLRINI 1687 (1758)
T ss_pred HHHHhcCCc
Confidence 555555443
No 331
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=41.62 E-value=1.6e+02 Score=22.69 Aligned_cols=138 Identities=23% Similarity=0.218 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHhcC-Ch----HHHHHHHhc-----cCcHHHHH-hhccCCChHHHHHHHHHHHhhCCCC----------
Q 044293 24 DQQKALQTLASITRV-SP----QYRSLLAQT-----DGAISTLL-GLSKSSSPIIRTLSLSILLNLSLNP---------- 82 (236)
Q Consensus 24 ~~~~a~~~L~~l~~~-~~----~~~~~i~~~-----~g~i~~Lv-~lL~~~~~~~~~~a~~~L~~l~~~~---------- 82 (236)
+|..|+.+|..++.. ++ ..+..|.=. ...-+.|+ -++.++++.+|..|+.++..|-...
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 466677777777765 21 122222211 01222333 3455667889999998888763321
Q ss_pred chhH-H-------hh--hcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccc-hhhhhhcccCcHHHHHH----hhcCCC
Q 044293 83 DLKQ-S-------LA--SMETIYRLNWIIQSSSSQETVKLASSLICSLAMLD-KNKARFGVAGTVQVLVK----AVSAPS 147 (236)
Q Consensus 83 ~~~~-~-------i~--~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~----lL~~~~ 147 (236)
..+. . +. -......|+..|+...+..+......+|..|.... -.|-. .|.++.++. ++.+.+
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~---~~ll~~~v~~v~~~l~~~d 158 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLP---PGLLTEVVTQVRPLLRHRD 158 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcC---HhHHHHHHHHHHHHHhcCC
Confidence 1110 0 11 12345566777776656777778888888776644 23332 466666664 445677
Q ss_pred cHHHHHHHHHHHHHhcC
Q 044293 148 NPAGHHLLSSLAELVQF 164 (236)
Q Consensus 148 ~~~~~~a~~aL~~L~~~ 164 (236)
+.++..++.++..+...
T Consensus 159 ~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 159 PNVRVAALSCLGALLSV 175 (182)
T ss_pred CcHHHHHHHHHHHHHcC
Confidence 78888888888877653
No 332
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=41.18 E-value=1.5e+02 Score=22.99 Aligned_cols=95 Identities=14% Similarity=0.158 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCC-CchhHHhhhcccHHHHHHHH
Q 044293 23 EDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLN-PDLKQSLASMETIYRLNWII 101 (236)
Q Consensus 23 ~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~L~~lL 101 (236)
.+...+...|+.++.++..|+..+.+. ++.++..+.......--.+..++..+-.+ ++-...+.+. -|..++.++
T Consensus 76 ~l~~~~~~lL~~f~~~n~~NQ~~l~~~---~~~l~~~~~~~~~~~~~~~~d~l~~i~~dN~~L~~~i~e~-~I~~~i~ll 151 (207)
T PF01365_consen 76 ELFRLCYRLLRQFCRGNRENQKYLFKH---LDFLISIFMQLQIGYGLGALDVLTEIFRDNPELCESISEE-HIEKFIELL 151 (207)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHH---HH-----HHCCCH-TTHHHHHHHHHHHTT---------------------
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHH---HhHHHHHHHHhhccCCchHHHHHHHHHHCcHHHHHHhhHH-HHHHHHHHH
Confidence 456789999999999999999988876 66554443332111111233444443332 2334444433 488888888
Q ss_pred hccCCHHHHHHHHHHHHHhcccc
Q 044293 102 QSSSSQETVKLASSLICSLAMLD 124 (236)
Q Consensus 102 ~~~~~~~~~~~a~~~L~~Ls~~~ 124 (236)
... ..+ ..-...|..++...
T Consensus 152 ~~~-gr~--~~~L~~L~~lc~~~ 171 (207)
T PF01365_consen 152 RKH-GRQ--PRYLDFLSSLCVCN 171 (207)
T ss_dssp -----------------------
T ss_pred HHc-CCC--hHHHHHHhhhcccC
Confidence 763 111 22344455555543
No 333
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=40.44 E-value=1.7e+02 Score=22.50 Aligned_cols=145 Identities=15% Similarity=0.092 Sum_probs=87.0
Q ss_pred cHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhhhc-ccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhh
Q 044293 52 AISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASM-ETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARF 130 (236)
Q Consensus 52 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~-g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i 130 (236)
.++.++++.-+++..++..|+.++..+.. +.++.+ -.+|.++.+..+. ++.++..|...+..+..-.+.--.-
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~-----qGLvnP~~cvp~lIAL~ts~-~~~ir~~A~~~l~~l~eK~~s~v~~ 82 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILR-----QGLVNPKQCVPTLIALETSP-NPSIRSRAYQLLKELHEKHESLVES 82 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHh-----cCCCChHHHHhHhhhhhCCC-ChHHHHHHHHHHHHHHHHhHHHHHH
Confidence 56677777777888888888888876433 333332 3788899988887 8999999999999886643221111
Q ss_pred cccCcHHHHHHhhcC--CCcH--H---HHHHHHHHHHHhc-CCCChHHHHHhCcHHHHHHHhcCC-------ChhhHHHH
Q 044293 131 GVAGTVQVLVKAVSA--PSNP--A---GHHLLSSLAELVQ-FHGNSTLAVRAGAVSELIHLIGST-------EAEDLAGT 195 (236)
Q Consensus 131 ~~~g~i~~Lv~lL~~--~~~~--~---~~~a~~aL~~L~~-~~~~~~~~~~~g~i~~lv~ll~~~-------~~~~~~~~ 195 (236)
.-..|+..-..+-+. ++.. . ...-+.-++.+.. +...|..+ +..+++.+... +.+.-...
T Consensus 83 ~~~~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~~~~~~~~~~~~~~~l~~ 157 (187)
T PF12830_consen 83 RYSEGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFDFDLTKLSSESSPSDLDF 157 (187)
T ss_pred HHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHHhhccccccccchhHHHH
Confidence 113345555544432 1111 1 3455566777766 34555555 45566666442 12333456
Q ss_pred HHHHHHHHcCCh
Q 044293 196 SLAVLNLLARFD 207 (236)
Q Consensus 196 a~~~L~~l~~~~ 207 (236)
..-+..||+.-|
T Consensus 158 ~~Fla~nLA~l~ 169 (187)
T PF12830_consen 158 LLFLAENLATLP 169 (187)
T ss_pred HHHHHHHHhcCC
Confidence 666777777654
No 334
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=39.74 E-value=2.7e+02 Score=24.73 Aligned_cols=134 Identities=13% Similarity=0.061 Sum_probs=86.4
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhc---C-------CCcHHHHHHHHHHHHHhcC
Q 044293 95 YRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVS---A-------PSNPAGHHLLSSLAELVQF 164 (236)
Q Consensus 95 ~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~---~-------~~~~~~~~a~~aL~~L~~~ 164 (236)
..++.+|..+.....+..+.-++.-|+.+...-.-+.....++.|+.+-. . .+..+.-.+++||.|+..+
T Consensus 48 e~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~ 127 (532)
T KOG4464|consen 48 ERIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFH 127 (532)
T ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhc
Confidence 35677777774355666788888999988876666555444555555442 1 1236788999999999975
Q ss_pred -CCChHHHHHhCcHHHHHHHhcCC----ChhhHHHHHHHHHHHHc-CChhhHHHHH-hcCCcHHHHHHHhhC
Q 044293 165 -HGNSTLAVRAGAVSELIHLIGST----EAEDLAGTSLAVLNLLA-RFDEGMIALT-KTDQIVSLMVDVLKG 229 (236)
Q Consensus 165 -~~~~~~~~~~g~i~~lv~ll~~~----~~~~~~~~a~~~L~~l~-~~~~~~~~i~-~~g~~i~~lv~~l~~ 229 (236)
+.-+..+.+......+.+.+... -...+.-.-++.|.-+. -.++.|.++. ..+| .+.+-+.+..
T Consensus 128 Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~G-l~~lt~~led 198 (532)
T KOG4464|consen 128 SQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLG-LELLTNWLED 198 (532)
T ss_pred cHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcc-cHHHHHHhhc
Confidence 45566777777777777766432 11234445666666655 3557777754 6667 6777776643
No 335
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=39.02 E-value=2.4e+02 Score=23.85 Aligned_cols=110 Identities=18% Similarity=0.151 Sum_probs=67.3
Q ss_pred HHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHH-HhcccchhhhhhcccCcHHHHHHhhcC
Q 044293 67 IRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLIC-SLAMLDKNKARFGVAGTVQVLVKAVSA 145 (236)
Q Consensus 67 ~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~-~Ls~~~~~~~~i~~~g~i~~Lv~lL~~ 145 (236)
-|...+.+|..+.. .. .....+..+..++....++.....++.++. ++... ..-.....+..+.+=+.+
T Consensus 3 ~r~~~~~~L~~l~~-~~-----~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~----~~~~~~~~~~~~~kGl~~ 72 (339)
T PF12074_consen 3 QRVLHASMLSSLPS-SS-----LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL----SSELPKKVVDAFKKGLKD 72 (339)
T ss_pred HHHHHHHHHHhCCC-cc-----hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh----CcCCCHHHHHHHHHHhcC
Confidence 34455667777666 22 334456666677766547788877777766 33332 011124566777777777
Q ss_pred CCcHHHHHHHHHHHHHhcCCCChHHHH-HhCcHHHHHHHhcC
Q 044293 146 PSNPAGHHLLSSLAELVQFHGNSTLAV-RAGAVSELIHLIGS 186 (236)
Q Consensus 146 ~~~~~~~~a~~aL~~L~~~~~~~~~~~-~~g~i~~lv~ll~~ 186 (236)
..+.+++..+..+........+....- -...+|.|++.++.
T Consensus 73 kk~~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~ 114 (339)
T PF12074_consen 73 KKPPVRRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLKE 114 (339)
T ss_pred CCCcHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHH
Confidence 777788888888877766333333222 24578888888854
No 336
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=38.87 E-value=2.5e+02 Score=24.03 Aligned_cols=145 Identities=12% Similarity=0.088 Sum_probs=80.6
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCC-------ChHHHHHHHHHHHhhC
Q 044293 7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSS-------SPIIRTLSLSILLNLS 79 (236)
Q Consensus 7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~-------~~~~~~~a~~~L~~l~ 79 (236)
+-.-.++...+.++++..+..| |..+..+ +.. + -.+|.++.++... +-.........+..|.
T Consensus 177 q~yf~~It~a~~~~~~~~r~~a---L~sL~tD-~gl------~-~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl 245 (343)
T cd08050 177 QLYFEEITEALVGSNEEKRREA---LQSLRTD-PGL------Q-QLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALL 245 (343)
T ss_pred HHHHHHHHHHHhCCCHHHHHHH---HHHhccC-CCc------h-hhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHh
Confidence 3334445555555555556655 4444333 221 1 3566666665432 3344455566666777
Q ss_pred CCCchhHHhhhcccHHHHHHHHhcc---------CCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCc--
Q 044293 80 LNPDLKQSLASMETIYRLNWIIQSS---------SSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSN-- 148 (236)
Q Consensus 80 ~~~~~~~~i~~~g~i~~L~~lL~~~---------~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~-- 148 (236)
.++.-.....-+-.+|+++.++-.. +.-.+|..|+.+|..++..-++.-.-...-.+..+.+.+.+++.
T Consensus 246 ~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~ 325 (343)
T cd08050 246 DNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPL 325 (343)
T ss_pred cCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCc
Confidence 7776544444445888888877321 13478899999999998644333222234445566666665432
Q ss_pred HHHHHHHHHHHHHh
Q 044293 149 PAGHHLLSSLAELV 162 (236)
Q Consensus 149 ~~~~~a~~aL~~L~ 162 (236)
....-|+..|..+.
T Consensus 326 ~~~YGAi~GL~~lG 339 (343)
T cd08050 326 TTHYGAIVGLSALG 339 (343)
T ss_pred chhhHHHHHHHHhC
Confidence 23566666666554
No 337
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=38.57 E-value=1.1e+02 Score=26.67 Aligned_cols=92 Identities=13% Similarity=0.151 Sum_probs=68.1
Q ss_pred CcHHHHHhhccCCChHHHHHHHHHHHhhCCCC--chhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhh
Q 044293 51 GAISTLLGLSKSSSPIIRTLSLSILLNLSLNP--DLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKA 128 (236)
Q Consensus 51 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~--~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~ 128 (236)
+++..+-+.|.+.++.+.-.|+..+-.|+.+= ..+..|...++...|..++.+...+.+.+....++.+.+..-.+-.
T Consensus 45 d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K~Dp 124 (462)
T KOG2199|consen 45 DCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFKKDP 124 (462)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccCc
Confidence 57888889999999999888888888776642 3477788899999999999943368888888888888877322222
Q ss_pred hhcccCcHHHHHHhhcC
Q 044293 129 RFGVAGTVQVLVKAVSA 145 (236)
Q Consensus 129 ~i~~~g~i~~Lv~lL~~ 145 (236)
. ...|..|.+-|+.
T Consensus 125 ~---lsLi~~l~~klk~ 138 (462)
T KOG2199|consen 125 S---LSLISALYKKLKE 138 (462)
T ss_pred c---hhHHHHHHHHHHH
Confidence 2 3556666666654
No 338
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=38.41 E-value=2.9e+02 Score=24.60 Aligned_cols=162 Identities=13% Similarity=0.085 Sum_probs=99.5
Q ss_pred HHHHHHHhccCcHHHHHhhccCCC-hHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhc--c-------CCHHHH
Q 044293 41 QYRSLLAQTDGAISTLLGLSKSSS-PIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQS--S-------SSQETV 110 (236)
Q Consensus 41 ~~~~~i~~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~--~-------~~~~~~ 110 (236)
++|..+.+ +++ +.|.++. ...+...+..+.-|+.+...-..+........|..+-+- + .+.++.
T Consensus 41 d~r~eL~e--~i~----~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi 114 (532)
T KOG4464|consen 41 DDRKELGE--RIF----EVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVI 114 (532)
T ss_pred hhHHHHHH--HHH----HHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHH
Confidence 44555553 344 4454544 344666778888888888776666655555666655431 1 145777
Q ss_pred HHHHHHHHHhcccch-hhhhhcccCcHHHHHHhhcCC---C--cHHHHHHHHHHHHHhc-CCCChHHH-HHhCcHHHHHH
Q 044293 111 KLASSLICSLAMLDK-NKARFGVAGTVQVLVKAVSAP---S--NPAGHHLLSSLAELVQ-FHGNSTLA-VRAGAVSELIH 182 (236)
Q Consensus 111 ~~a~~~L~~Ls~~~~-~~~~i~~~g~i~~Lv~lL~~~---~--~~~~~~a~~aL~~L~~-~~~~~~~~-~~~g~i~~lv~ 182 (236)
-.+..+|+|+..... .+....+......+.+.+... + .......++.|.-|+. ....|.++ .+.++++.+-+
T Consensus 115 ~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~ 194 (532)
T KOG4464|consen 115 MESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTN 194 (532)
T ss_pred HHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHH
Confidence 889999999988763 455555666666666655431 1 1344566666766665 44666665 56899999999
Q ss_pred HhcCC---Ch-----h---h---HHHHHHHHHHHHcCChh
Q 044293 183 LIGST---EA-----E---D---LAGTSLAVLNLLARFDE 208 (236)
Q Consensus 183 ll~~~---~~-----~---~---~~~~a~~~L~~l~~~~~ 208 (236)
.+.+. ++ + + ..-.++.++.|++.++.
T Consensus 195 ~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~~~~ 234 (532)
T KOG4464|consen 195 WLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVTCDSD 234 (532)
T ss_pred HhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhheeeccc
Confidence 99762 11 1 2 22346667777776543
No 339
>PLN03205 ATR interacting protein; Provisional
Probab=38.10 E-value=1.3e+02 Score=26.57 Aligned_cols=113 Identities=12% Similarity=0.083 Sum_probs=62.1
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHH---HhccCcHHHHHhhc----cCCChHHHHHHHHHHHhhCC
Q 044293 8 ETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLL---AQTDGAISTLLGLS----KSSSPIIRTLSLSILLNLSL 80 (236)
Q Consensus 8 ~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i---~~~~g~i~~Lv~lL----~~~~~~~~~~a~~~L~~l~~ 80 (236)
..++.|+.+..-++..+...+++.|+.+..+=-.++..| -.. +++..+--+. .+....++-.|+.++.-+..
T Consensus 323 tLlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~-NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIlm 401 (652)
T PLN03205 323 SLVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDA-NWHSLFELMNQIASIRTEEDVKLEALSIMNIIVM 401 (652)
T ss_pred HHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccc-cHHHHHHHHHHHHhccchhheeeehhhhhHHhhh
Confidence 345555566665665555556666554433211111111 122 3443322222 13344556667776655443
Q ss_pred --CCc-hhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhc
Q 044293 81 --NPD-LKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLA 121 (236)
Q Consensus 81 --~~~-~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls 121 (236)
+.. .|..+......+.+-++|+...-.-+++.|...|+-|-
T Consensus 402 ssna~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLL 445 (652)
T PLN03205 402 STDAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLL 445 (652)
T ss_pred ccchhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHH
Confidence 443 37788888899999999987544567777777766543
No 340
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=38.02 E-value=2.3e+02 Score=23.28 Aligned_cols=154 Identities=16% Similarity=0.122 Sum_probs=74.4
Q ss_pred hHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhcc--CCChHHHHHHHHHHHhhCCC
Q 044293 4 PRVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSK--SSSPIIRTLSLSILLNLSLN 81 (236)
Q Consensus 4 ~~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~--~~~~~~~~~a~~~L~~l~~~ 81 (236)
.+++-.+..+.+.| .|......++..+..+.....-.... .. ..+..+.+-.+ +.....|..+..++..+-.+
T Consensus 38 ~ev~~L~~F~~~rl--~D~~~~~~~l~gl~~L~~~~~~~~~~-~~--~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~ 112 (262)
T PF14500_consen 38 QEVQVLLDFFCSRL--DDHACVQPALKGLLALVKMKNFSPES-AV--KILRSLFQNVDVQSLPQSTRYAVYQLLDSLLEN 112 (262)
T ss_pred HHHHHHHHHHHHHh--ccHhhHHHHHHHHHHHHhCcCCChhh-HH--HHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHH
Confidence 33333444444444 34444444556665555321111111 11 23444443222 11234566666666665443
Q ss_pred CchhHHhh--hcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchh---hhh---------------------------
Q 044293 82 PDLKQSLA--SMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKN---KAR--------------------------- 129 (236)
Q Consensus 82 ~~~~~~i~--~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~---~~~--------------------------- 129 (236)
.+..+. ..+.+..+++.++-.+||.....+...+..+...-+. .+.
T Consensus 113 --~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~ed 190 (262)
T PF14500_consen 113 --HREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDISEFAEDLFDVFSCYFPITFRPPPNDPYGITRED 190 (262)
T ss_pred --hHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHH
Confidence 222222 3457777777776555676665555554443211110 000
Q ss_pred --------h-----cccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcC
Q 044293 130 --------F-----GVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQF 164 (236)
Q Consensus 130 --------i-----~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~ 164 (236)
+ ...-++|.|++-|.+.++.++..++.+|..++..
T Consensus 191 Lk~~L~~cl~s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~ 238 (262)
T PF14500_consen 191 LKRALRNCLSSTPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIEN 238 (262)
T ss_pred HHHHHHHHhcCcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 0 1235567777777777767777777777666653
No 341
>KOG2312 consensus Predicted transcriptional regulator, contains ARID domain [Transcription]
Probab=37.88 E-value=5 Score=37.06 Aligned_cols=151 Identities=11% Similarity=0.029 Sum_probs=95.4
Q ss_pred HHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccCCHHHH
Q 044293 31 TLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETV 110 (236)
Q Consensus 31 ~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~ 110 (236)
..++|+.+ .+|+..+....-.-..||..-+..-..++..|+....||+..... .+.....+-.+.+-+.+. |-...
T Consensus 16 v~r~LSf~-~~n~~~~~~~~p~~~~lVm~a~~~ws~~~Vqal~s~~nlaqpt~~--e~S~~~~L~t~t~Gi~S~-drfli 91 (847)
T KOG2312|consen 16 VSRMLSFK-RQNQQQHSPAPPPQQVLVMVAQPQWSQMQVQALQSNANLAQPTSG--ESSLIKQLLTPTRGISSP-DRFLI 91 (847)
T ss_pred eeeeeccc-hhhhcccCCCCChhheeeeecccccchhhhHhhhhhcccCCcchh--hhhHHHHHhhhccCCCCC-CceeE
Confidence 45666665 567776665533334444333333345677789999999983221 111111122222222233 44555
Q ss_pred HHHHHHHHHhcccchhhhhhcc---cCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCC-CChHHHHH-hCcHHHHHHHhc
Q 044293 111 KLASSLICSLAMLDKNKARFGV---AGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFH-GNSTLAVR-AGAVSELIHLIG 185 (236)
Q Consensus 111 ~~a~~~L~~Ls~~~~~~~~i~~---~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~-~~~~~~~~-~g~i~~lv~ll~ 185 (236)
-.+.-+|.+||..+.|-..|-+ ..+....+..+.-.+.-.....+.+|+.|+... .-|..+.+ .+.+..||.+..
T Consensus 92 mr~lEIl~~lcgrEgN~qvIc~~l~~d~y~~iv~~ltl~Dvllvi~Tle~LyalsemGdvac~~Is~v~klidqLVsl~t 171 (847)
T KOG2312|consen 92 MRALEILPPLCGREGNPQVICQVLSNDAYGFIVQGLTLADVLLVIQTLEQLYALSEMGDVACVPISNVQKLIDQLVSLST 171 (847)
T ss_pred eeccccCcccccCCCCceeehhhhchHHHHHHHhccchhHeehhhhhhhHHhcccccCCccchhhhhhhhhhhhhhccch
Confidence 6788899999998888877764 677788888887676667788889999888754 45666655 688888888764
No 342
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=36.48 E-value=1.5e+02 Score=20.76 Aligned_cols=68 Identities=19% Similarity=0.102 Sum_probs=44.2
Q ss_pred cHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhc-CCCcHH-HHHHHHHHHHHhcCC
Q 044293 93 TIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVS-APSNPA-GHHLLSSLAELVQFH 165 (236)
Q Consensus 93 ~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~-~~~a~~aL~~L~~~~ 165 (236)
.+|.+.+.|+.+..+|.+..+-..+..|+.-- .+. ...+..+++-+- ...... .+.++.+|..++..+
T Consensus 7 lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~----~L~-~~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 7 LLPFLLKGLKSSSSPDLQAAAYMILSVLASKV----PLS-DEVLNALMESILKNWTQETVQRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhhc----CCc-HHHHHHHHHHHHhccccchhHHHHHHHHHHHHHcc
Confidence 57888888884437899988888888887633 222 234455554433 233333 478899999888765
No 343
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=35.93 E-value=75 Score=23.40 Aligned_cols=28 Identities=14% Similarity=0.145 Sum_probs=19.3
Q ss_pred cCcHHHHHHhhcCCCcHHHHHHHHHHHH
Q 044293 133 AGTVQVLVKAVSAPSNPAGHHLLSSLAE 160 (236)
Q Consensus 133 ~g~i~~Lv~lL~~~~~~~~~~a~~aL~~ 160 (236)
...-..+..+|.++++.++..|+.||..
T Consensus 16 ~~l~~~~~~LL~~~d~~vQklAL~cll~ 43 (141)
T PF07539_consen 16 DELYDALLRLLSSRDPEVQKLALDCLLT 43 (141)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4455566677777777777777777754
No 344
>KOG2029 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.40 E-value=2.3e+02 Score=26.49 Aligned_cols=87 Identities=15% Similarity=0.155 Sum_probs=58.6
Q ss_pred HHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHh--ccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcC
Q 044293 68 RTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQ--SSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSA 145 (236)
Q Consensus 68 ~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~--~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~ 145 (236)
+..-+.++.....+.+.-..+-..|+...+..+-+ ++ +.++.......+.|++.+......+...|.++.+-.+.+.
T Consensus 267 ~~~~a~~~~~~~K~~~lsd~l~~dg~~q~~~~~~e~~rd-~~~v~~~l~rvlanms~~~~~~~s~~~S~W~sl~s~~~t~ 345 (697)
T KOG2029|consen 267 GDLNANALLETPKTFELSDGLWDDGGLQHLAVLQEFDRD-GQVVMRALMRVLANMSEDEKLALSDSRSGWVSLVSEMSTT 345 (697)
T ss_pred hhHHHHHHHhccccHHHHHHHHhcchHHHHHHHHHHhcC-ChhhhHHHHHHHHhhhcccccchhhhhhhhHHHHHHHhcC
Confidence 34444555555555555556666677666555433 34 6788899999999999888777888889998866666666
Q ss_pred CCcHHHHHHHH
Q 044293 146 PSNPAGHHLLS 156 (236)
Q Consensus 146 ~~~~~~~~a~~ 156 (236)
++ .+++.+..
T Consensus 346 ~d-~l~~~~~s 355 (697)
T KOG2029|consen 346 PD-SLRERALS 355 (697)
T ss_pred ch-hHHHHHHH
Confidence 64 55555443
No 345
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=34.13 E-value=2e+02 Score=21.46 Aligned_cols=75 Identities=17% Similarity=0.258 Sum_probs=47.3
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHH-hccCcHHHHHh-hccCCC--hHHHHHHHHHHHhhCCCCc
Q 044293 8 ETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLA-QTDGAISTLLG-LSKSSS--PIIRTLSLSILLNLSLNPD 83 (236)
Q Consensus 8 ~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~-~~~g~i~~Lv~-lL~~~~--~~~~~~a~~~L~~l~~~~~ 83 (236)
+..+.+.+.+.++++.+-..+++.+..+... .+..+. +.+=.++.++. ++.++. ..-+..++.++..++.+|.
T Consensus 73 ~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~---~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~p~ 149 (168)
T PF12783_consen 73 DLCPALLKNLSSSDFPIFSRSLRIFLTLLSR---FRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELCKDPQ 149 (168)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhChh
Confidence 3455566666666677888888888888754 232222 11123444444 555544 3567789999999999887
Q ss_pred hh
Q 044293 84 LK 85 (236)
Q Consensus 84 ~~ 85 (236)
.-
T Consensus 150 ~l 151 (168)
T PF12783_consen 150 FL 151 (168)
T ss_pred HH
Confidence 63
No 346
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=32.80 E-value=3e+02 Score=24.57 Aligned_cols=76 Identities=14% Similarity=0.034 Sum_probs=47.9
Q ss_pred ChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhh
Q 044293 64 SPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAV 143 (236)
Q Consensus 64 ~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL 143 (236)
+..++...+.++..+..-|+- =+..|.+|++-++..++.+++..++.+|..|-..-..+..--...+|.-|..++
T Consensus 289 ~~~V~Aa~A~A~v~l~~lP~K-----LnPiIrpLMdSIK~Een~~LQ~rsA~slA~Li~~~~~rkp~PndKIvkNLc~fl 363 (441)
T PF12054_consen 289 DVRVLAAAASALVALGGLPKK-----LNPIIRPLMDSIKREENELLQQRSAESLARLIQLCVDRKPCPNDKIVKNLCTFL 363 (441)
T ss_pred HHHHHHHHHHHHHHhccCCCC-----ccHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhhhh
Confidence 445666667777776555532 256888999999988789999999999887755332222211233344444444
Q ss_pred c
Q 044293 144 S 144 (236)
Q Consensus 144 ~ 144 (236)
.
T Consensus 364 C 364 (441)
T PF12054_consen 364 C 364 (441)
T ss_pred c
Confidence 3
No 347
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=32.73 E-value=1.8e+02 Score=23.89 Aligned_cols=145 Identities=14% Similarity=0.115 Sum_probs=84.4
Q ss_pred cHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhccc--------
Q 044293 52 AISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAML-------- 123 (236)
Q Consensus 52 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~-------- 123 (236)
.+.-|..+|+.+++..+ .+...++. ..+++.+.||.|+..=+ ++++...++..|.+|+..
T Consensus 14 ~LkdL~r~lr~dd~~~~-~v~r~lg~--------~~iv~~DLiPiL~~~~~---~~~l~~~~l~LLV~LT~P~~~~~~~~ 81 (266)
T PF04821_consen 14 CLKDLKRFLRRDDEDQR-DVRRQLGE--------WNIVQKDLIPILISYKD---DDKLFLACLRLLVNLTWPIELLVESQ 81 (266)
T ss_pred HHHHHHHHHHHhCcchH-HHHHHHHH--------hchhhhhHHHHHHhccC---chHHHHHHHHHHHHhCCCHHHhccCC
Confidence 45566666666555443 33334432 23445555555444321 455666666666666541
Q ss_pred -----------------chhhhhhcccCcHHHHHHhhcC----C-------CcHHHHHHHHHHHHHhcCCCC--------
Q 044293 124 -----------------DKNKARFGVAGTVQVLVKAVSA----P-------SNPAGHHLLSSLAELVQFHGN-------- 167 (236)
Q Consensus 124 -----------------~~~~~~i~~~g~i~~Lv~lL~~----~-------~~~~~~~a~~aL~~L~~~~~~-------- 167 (236)
-.+|..|.+.+++..+++++.. + +....+..+..++|+-.-++.
T Consensus 82 ~~~~~~~~~~~~l~~~l~~yK~afl~~~~l~~~~~~l~~~l~~~~~~rt~~d~~ii~lvL~LiRNlL~Ip~~~~~~~~~~ 161 (266)
T PF04821_consen 82 PKDKNQRRNIPELLKYLQSYKEAFLDPRVLKALIRLLLPPLEKDWEDRTERDNLIIELVLTLIRNLLAIPDPPSASKRSD 161 (266)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcccccCCHHHHHHHHHHHHHHHHHhcCCCCcccccccc
Confidence 1345566677888888877742 1 123567788888888653220
Q ss_pred -----h----HHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChh
Q 044293 168 -----S----TLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDE 208 (236)
Q Consensus 168 -----~----~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~ 208 (236)
+ ..+.+.|+...|+.+.++....+.....+.++..|..+.+
T Consensus 162 ~~~~~~d~li~~l~~~~v~~lLL~l~s~~~~~~f~~~lLEIi~ll~k~~~ 211 (266)
T PF04821_consen 162 EDSSLHDQLIWALFESGVLDLLLTLASSPQESDFNLLLLEIIYLLFKGQD 211 (266)
T ss_pred hhHHHHHHHHHHHHHcCHHHHHHHHHhCccccchhhHHHHHHHHHHcCCC
Confidence 1 2344568888888888875334454577788887776543
No 348
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=32.40 E-value=1.2e+02 Score=26.56 Aligned_cols=53 Identities=13% Similarity=0.113 Sum_probs=38.5
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhcc
Q 044293 7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSK 61 (236)
Q Consensus 7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~ 61 (236)
...|..|+.++.++|+.+|...-..|+.+-......|..+.+ .+...+.+++.
T Consensus 132 ~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~--~i~~~~~~fi~ 184 (409)
T PF01603_consen 132 QKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRK--SINNIFYRFIY 184 (409)
T ss_dssp HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHH--HHHHHHHHHhc
Confidence 578899999999999999999888888865544455555554 35555555554
No 349
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=32.18 E-value=6.3e+02 Score=27.21 Aligned_cols=133 Identities=11% Similarity=0.121 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhccCcHHH----HHhhccCCChHHHHHHHHHHHhhCCCCchhHHhh----hcccHHH
Q 044293 25 QQKALQTLASITRVSPQYRSLLAQTDGAIST----LLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLA----SMETIYR 96 (236)
Q Consensus 25 ~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~----Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~----~~g~i~~ 96 (236)
+..++..|..++..|.. |-.+.=. .+-.. ++..-.+.+..+.-.|+..|..++..=-.+..+. +..++.|
T Consensus 1109 r~FsLqKLveIa~~Nm~-Rirl~W~-~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkP 1186 (1780)
T PLN03076 1109 RVFSLTKIVEIAHYNMN-RIRLVWS-SIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKP 1186 (1780)
T ss_pred chhHHHHHHHHHHhccc-chheehH-hHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHH
Confidence 45566666666665432 3222111 22222 2332233455666677777777665322222221 4578999
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcC----CCcHHHHHHHHHHHHHhc
Q 044293 97 LNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSA----PSNPAGHHLLSSLAELVQ 163 (236)
Q Consensus 97 L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~----~~~~~~~~a~~aL~~L~~ 163 (236)
+..++++..+.++++....++.++..... ..| +. |=+.++.++.. .++...+.|..++..++.
T Consensus 1187 fe~im~~s~~~eVrE~ILeCv~qmI~s~~--~nI-kS-GWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~ 1253 (1780)
T PLN03076 1187 FVIVMRKSNAVEIRELIIRCVSQMVLSRV--NNV-KS-GWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIR 1253 (1780)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHHH--hhh-hc-CcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 99988876678999999999988765432 222 22 44666666652 345566667776665554
No 350
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=30.62 E-value=3.4e+02 Score=23.13 Aligned_cols=185 Identities=15% Similarity=0.072 Sum_probs=112.9
Q ss_pred HHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCc-hhH----Hhh-hcccHHHHHHHHhccCCHHHHHHHHH
Q 044293 42 YRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPD-LKQ----SLA-SMETIYRLNWIIQSSSSQETVKLASS 115 (236)
Q Consensus 42 ~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~-~~~----~i~-~~g~i~~L~~lL~~~~~~~~~~~a~~ 115 (236)
..+.+..+ |....|+..+...+-+.+..++.+..++-.-.- .|. .+. ....+..|+.- ... .+++-.++-.
T Consensus 71 Ltqef~~~-~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~-~~~-~~~iaL~cg~ 147 (342)
T KOG1566|consen 71 LTQEFYNA-DVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKG-YEN-TPEIALTCGN 147 (342)
T ss_pred HHHHHHhC-CchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhh-hcc-chHHHHHHHH
Confidence 45677777 999999999988887888877777776643322 222 222 33455555544 111 3778888888
Q ss_pred HHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCC-CChHHHHHhCc---HHH-HHHHhcCCChh
Q 044293 116 LICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFH-GNSTLAVRAGA---VSE-LIHLIGSTEAE 190 (236)
Q Consensus 116 ~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~-~~~~~~~~~g~---i~~-lv~ll~~~~~~ 190 (236)
.+..+...+--...+....-+......++.++.+....|..+...+-..+ .....+...+- .+- --.++.+++ -
T Consensus 148 mlrEcirhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~N-y 226 (342)
T KOG1566|consen 148 MLRECIRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSEN-Y 226 (342)
T ss_pred HHHHHHhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccc-e
Confidence 88888888877777777788899999999998888888888877665533 33333332221 233 333444442 3
Q ss_pred hHHHHHHHHHHHHcCChhhHHH---HHh-cCCcHHHHHHHhhCCc
Q 044293 191 DLAGTSLAVLNLLARFDEGMIA---LTK-TDQIVSLMVDVLKGRS 231 (236)
Q Consensus 191 ~~~~~a~~~L~~l~~~~~~~~~---i~~-~g~~i~~lv~~l~~~~ 231 (236)
-+..++...|..+-.+..+... .+. ... ...+..+|+..+
T Consensus 227 vtkrqs~kllg~llldr~N~~~M~kYiss~en-LKlmM~llrdks 270 (342)
T KOG1566|consen 227 VTKRQSLKLLGELLLDRSNSAVMTKYISSPEN-LKLMMNLLRDKS 270 (342)
T ss_pred ehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHH-HHHHHHHhhCcc
Confidence 4556666666665544433333 222 122 455555665543
No 351
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=30.55 E-value=1.8e+02 Score=19.91 Aligned_cols=58 Identities=12% Similarity=0.011 Sum_probs=39.9
Q ss_pred chHHHhHHHHHHHHhc----CCCHHHHHHHHHHHHHHhcCChHH--HHHHHhccCcHHHHHhhccCC
Q 044293 3 APRVRETINNCVSRSQ----SDSYEDQQKALQTLASITRVSPQY--RSLLAQTDGAISTLLGLSKSS 63 (236)
Q Consensus 3 ~~~~~~~i~~lv~~L~----~~~~~~~~~a~~~L~~l~~~~~~~--~~~i~~~~g~i~~Lv~lL~~~ 63 (236)
++.+...++.++-++. +-++++|..++..|.-+....++. ..... ..++-++.++...
T Consensus 2 ~~~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~---kil~~f~~ll~~~ 65 (102)
T PF12333_consen 2 PELLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWV---KILPNFLDLLGWS 65 (102)
T ss_pred hHHHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHH---HHHHHHHHHHCCC
Confidence 4566778888888875 568999999999999888776554 22222 2455556666554
No 352
>KOG1791 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.41 E-value=4.1e+02 Score=27.94 Aligned_cols=189 Identities=12% Similarity=0.115 Sum_probs=116.0
Q ss_pred HHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchh-HHhhhcccHHHHHHHHhccC---CHHHHHHHHHHH
Q 044293 42 YRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLK-QSLASMETIYRLNWIIQSSS---SQETVKLASSLI 117 (236)
Q Consensus 42 ~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~-~~i~~~g~i~~L~~lL~~~~---~~~~~~~a~~~L 117 (236)
.|..+.+. |..-.++.-+++.++.++..+.+++.-.-.|-+++ ....+.-.+-.++++.+++. ++.+-...+-..
T Consensus 1431 ~r~~fvs~-~lLa~~F~~lSS~D~~mr~la~~~lqi~~dHLe~l~ek~~a~~~ll~L~~l~qng~~e~~~Rl~si~alF~ 1509 (1758)
T KOG1791|consen 1431 IRLIFVSR-GLLALLFKGLSSDDPSMRKLAYWVLQIFLDHLENLLEKKQAQFNLLYLSCLAQNGSRESDPRLISICALFI 1509 (1758)
T ss_pred cchhhhhc-ccHHHHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCCcchhhHHHHHH
Confidence 34477777 88888888899999999999988887766677774 55555556778888887653 233222222221
Q ss_pred ---HHhcccc--hhh---------hhhcccCcHHHHHHhhcCCCcH--HHHHHHHHHHHHh-cCCCChHHHHHhCcHHHH
Q 044293 118 ---CSLAMLD--KNK---------ARFGVAGTVQVLVKAVSAPSNP--AGHHLLSSLAELV-QFHGNSTLAVRAGAVSEL 180 (236)
Q Consensus 118 ---~~Ls~~~--~~~---------~~i~~~g~i~~Lv~lL~~~~~~--~~~~a~~aL~~L~-~~~~~~~~~~~~g~i~~l 180 (236)
..++..+ ... ..+.+-.++|.+-+.+.+..+. ..+....-|-... .++..++.....+....+
T Consensus 1510 A~~~~ill~Ps~~ly~~In~~L~~s~~vdlq~iP~F~~ffySs~~e~~t~R~Wvl~LV~~glks~~D~ql~~~~~~~~~~ 1589 (1758)
T KOG1791|consen 1510 AFFSDILLVPSEGLYFPINGLLLSSKIVDLQGIPIFHRFFYSSVFEHHTEREWVLELVSKGLKSCPDYQLLQIRNIFETL 1589 (1758)
T ss_pred HHHHHHHcCCccccchhHHHHHHhhhhcccCCCccHHHHHHhccccccchhhhhHHHHHHHhcCchhhhHHhhcCcceEe
Confidence 2233332 111 1334556677777777664332 2233232333333 344555555667888888
Q ss_pred HHHhcCCC-hhhHHHHHHHHHHHHcCChhhHHHHHhcCCcHHHHHHHhhCCc
Q 044293 181 IHLIGSTE-AEDLAGTSLAVLNLLARFDEGMIALTKTDQIVSLMVDVLKGRS 231 (236)
Q Consensus 181 v~ll~~~~-~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~~i~~lv~~l~~~~ 231 (236)
+....+.= +.+.+...+.+|++-..-|..-.++++..|+..=++.++.++.
T Consensus 1590 lsf~sS~l~~~~S~~LIL~~L~~~Vk~p~~a~~mle~~Gl~sWi~niI~s~~ 1641 (1758)
T KOG1791|consen 1590 LSFYSSPLASEESKRLILATLQKGVKFPFYAYEMLEVPGLFSWILNIIPSSF 1641 (1758)
T ss_pred ehhhcchhHHHHHHHHHHHHHHhcCCCcHHHHHHHhcccHHHHHHHhccccc
Confidence 88877631 1334456788888888887777777776776777777877643
No 353
>PF14852 Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repeat; PDB: 1IYG_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A 1PC2_A 1NZN_A.
Probab=29.57 E-value=1e+02 Score=16.71 Aligned_cols=28 Identities=25% Similarity=0.270 Sum_probs=19.8
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcCC
Q 044293 12 NCVSRSQSDSYEDQQKALQTLASITRVS 39 (236)
Q Consensus 12 ~lv~~L~~~~~~~~~~a~~~L~~l~~~~ 39 (236)
.-+.+++++++..+..++..|..+..++
T Consensus 7 yAw~Lv~S~~~~d~~~Gi~lLe~l~~~~ 34 (35)
T PF14852_consen 7 YAWGLVKSNNREDQQEGIALLEELYRDE 34 (35)
T ss_dssp HHHHHHHSSSHHHHHHHHHHHHHHCCCS
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcc
Confidence 3456667788777788888887776543
No 354
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=29.51 E-value=4.8e+02 Score=26.92 Aligned_cols=156 Identities=12% Similarity=0.062 Sum_probs=80.9
Q ss_pred HHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchh
Q 044293 6 VRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLK 85 (236)
Q Consensus 6 ~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~ 85 (236)
+.+++..+.+++..+..+++...+..+.....-..+.-..+. +-+++..+.-|...+.+++..|+..+.-.+..-.+.
T Consensus 165 ~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~--~~vl~~~i~~L~ds~ddv~~~aa~~l~~~~s~~v~l 242 (1549)
T KOG0392|consen 165 IKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLL--NLVLDFVIEGLEDSDDDVRSVAAQFLVPAPSIQVKL 242 (1549)
T ss_pred hHHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhhhhcchHHHHHHHHHhhhhhHHHHhh
Confidence 345666667777777677766666665443321001111111 134566666777778888888888877654432111
Q ss_pred HHhhhcccHHHHHHHHhccCCHHHHHHH---HHHHHHhcccchhhh---hhc-ccCcHHHHHHhhcCCCcHHHHHHHHHH
Q 044293 86 QSLASMETIYRLNWIIQSSSSQETVKLA---SSLICSLAMLDKNKA---RFG-VAGTVQVLVKAVSAPSNPAGHHLLSSL 158 (236)
Q Consensus 86 ~~i~~~g~i~~L~~lL~~~~~~~~~~~a---~~~L~~Ls~~~~~~~---~i~-~~g~i~~Lv~lL~~~~~~~~~~a~~aL 158 (236)
..-.-.-.+..+...+... +. +...+ ...+..++...+.-. ++. ..|.+|.+...+++.=..++..++..+
T Consensus 243 ~~~~i~~lv~~l~~~l~~l-dd-l~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~~p~l~~~i~sv~~a~l~~l 320 (1549)
T KOG0392|consen 243 MVQKIAKLVHTLWSFLLEL-DD-LSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPRLWPFLRHTISSVRRAALETL 320 (1549)
T ss_pred hHhHHHHHHHHHHHHHHHh-hh-cchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHH
Confidence 1110122344444444433 11 11111 122333443332111 111 248888888888876556778888888
Q ss_pred HHHhcCC
Q 044293 159 AELVQFH 165 (236)
Q Consensus 159 ~~L~~~~ 165 (236)
..|...+
T Consensus 321 ~~lle~~ 327 (1549)
T KOG0392|consen 321 AMLLEAD 327 (1549)
T ss_pred HHHHhcC
Confidence 8777643
No 355
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=29.36 E-value=3.5e+02 Score=22.84 Aligned_cols=128 Identities=15% Similarity=0.181 Sum_probs=81.6
Q ss_pred hHHhhhcccHHHHHHHHhcc-------C-------------CH--HHHHHHHHHHHHhcccchhhhh-------------
Q 044293 85 KQSLASMETIYRLNWIIQSS-------S-------------SQ--ETVKLASSLICSLAMLDKNKAR------------- 129 (236)
Q Consensus 85 ~~~i~~~g~i~~L~~lL~~~-------~-------------~~--~~~~~a~~~L~~Ls~~~~~~~~------------- 129 (236)
+..+++.|.||.|-++++.- + +| -.+.+-++.+.+++..+.++..
T Consensus 2 q~~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~ 81 (303)
T PF12463_consen 2 QTRLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVESE 81 (303)
T ss_pred hHHHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCcccccc
Confidence 34567888888888888640 0 11 3667788888888885433221
Q ss_pred ---------hcccCcHHHHHHhhcCC--CcHHHHHHHHHHHHHhcCCCC---hHHHHHhCcHHHHHHHhcCCC--hhhHH
Q 044293 130 ---------FGVAGTVQVLVKAVSAP--SNPAGHHLLSSLAELVQFHGN---STLAVRAGAVSELIHLIGSTE--AEDLA 193 (236)
Q Consensus 130 ---------i~~~g~i~~Lv~lL~~~--~~~~~~~a~~aL~~L~~~~~~---~~~~~~~g~i~~lv~ll~~~~--~~~~~ 193 (236)
-.+.|.+..+++.+... +...+-.-+.|+-..-+.... +..+.+.|.++.+++-+-++. ..++.
T Consensus 82 ~~~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~ 161 (303)
T PF12463_consen 82 LNSNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVL 161 (303)
T ss_pred ccccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHH
Confidence 12368888888877654 233444445556555554433 445678999999999886542 34677
Q ss_pred HHHHHHHHHHcCC-hhhHHH
Q 044293 194 GTSLAVLNLLARF-DEGMIA 212 (236)
Q Consensus 194 ~~a~~~L~~l~~~-~~~~~~ 212 (236)
..+...|..|... .+.-..
T Consensus 162 Q~~FDLLGELiK~n~~~f~~ 181 (303)
T PF12463_consen 162 QSNFDLLGELIKFNRDAFQR 181 (303)
T ss_pred HHHHHHHHHHHCCCHHHHHH
Confidence 8888899988764 444333
No 356
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=28.63 E-value=2.3e+02 Score=26.45 Aligned_cols=97 Identities=12% Similarity=0.065 Sum_probs=64.4
Q ss_pred ChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcc--cCcHHHHHH
Q 044293 64 SPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGV--AGTVQVLVK 141 (236)
Q Consensus 64 ~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~--~g~i~~Lv~ 141 (236)
++.++..+...|.-.... .-..+.+..++...-|.|... +..++.....+|.+|+....+...+.+ .-+-..++.
T Consensus 288 ~d~IRv~c~~~L~dwi~l--vP~yf~k~~~lry~GW~LSDn-~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRFk~rILE 364 (740)
T COG5537 288 DDVIRVLCSMSLRDWIGL--VPDYFRKILGLRYNGWSLSDN-HEGVRLLVSKILLFLCSRIPHTDAIRRFVERFKDRILE 364 (740)
T ss_pred hHHHHHHHHHHHHHHHhc--chHHHHhhhcccccccccccc-hHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Confidence 455566665555543332 122333444778888888776 788999999999999887766654433 456677888
Q ss_pred hhcCCCcHHHHHHHHHHHHHhc
Q 044293 142 AVSAPSNPAGHHLLSSLAELVQ 163 (236)
Q Consensus 142 lL~~~~~~~~~~a~~aL~~L~~ 163 (236)
++..+.+-++..+.+.+..+..
T Consensus 365 ~~r~D~d~VRi~sik~l~~lr~ 386 (740)
T COG5537 365 FLRTDSDCVRICSIKSLCYLRI 386 (740)
T ss_pred HHhhccchhhHHHHHHHHHHHH
Confidence 8888766677777777665543
No 357
>KOG2374 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.62 E-value=4.1e+02 Score=24.22 Aligned_cols=55 Identities=18% Similarity=0.249 Sum_probs=41.8
Q ss_pred CchHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhh
Q 044293 2 SAPRVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGL 59 (236)
Q Consensus 2 ~~~~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~l 59 (236)
|.++++-.++.|+..+.++..+++--++..+-.|....+.+|..+++. ...++.|
T Consensus 38 sdee~~~~~~~L~~~~~~~h~~vR~l~lqii~elF~rs~~FR~lii~n---~~efLeL 92 (661)
T KOG2374|consen 38 SDEEVRLSSQTLMELMRHNHSQVRYLTLQIIDELFMRSKLFRTLIIEN---LDEFLEL 92 (661)
T ss_pred cHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhhHHHHHHHHhC---HHHHHHH
Confidence 456778888889999988888888888888877776667788888754 5555555
No 358
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=28.49 E-value=1.4e+02 Score=20.01 Aligned_cols=56 Identities=16% Similarity=0.087 Sum_probs=36.7
Q ss_pred CHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCC--cHHHHHHHHHHHHH
Q 044293 106 SQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPS--NPAGHHLLSSLAEL 161 (236)
Q Consensus 106 ~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~--~~~~~~a~~aL~~L 161 (236)
.-.+|..|+.+|..++..-...-.-.+.-.+..+.+.+.+++ .....-|+..|..|
T Consensus 19 h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 19 HWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL 76 (92)
T ss_pred hHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 458899999999998875433333334456677777777543 34556677777666
No 359
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=27.93 E-value=45 Score=24.94 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=20.3
Q ss_pred HHHHHhhccCCChHHHHHHHHHHHhh
Q 044293 53 ISTLLGLSKSSSPIIRTLSLSILLNL 78 (236)
Q Consensus 53 i~~Lv~lL~~~~~~~~~~a~~~L~~l 78 (236)
|++|+++|.++++++...|+.+|.+.
T Consensus 96 V~~LI~~L~~~d~~lA~~Aa~aLk~T 121 (154)
T PF11791_consen 96 VQPLIDLLKSDDEELAEEAAEALKNT 121 (154)
T ss_dssp HHHHHHGG--G-TTTHHHHHHHHHT-
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHhh
Confidence 89999999998999999999999874
No 360
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=27.84 E-value=3.9e+02 Score=22.87 Aligned_cols=111 Identities=8% Similarity=-0.005 Sum_probs=62.8
Q ss_pred cHHHHHHHHhcc-----C-CHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCC----C------cHHHHHHHH
Q 044293 93 TIYRLNWIIQSS-----S-SQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAP----S------NPAGHHLLS 156 (236)
Q Consensus 93 ~i~~L~~lL~~~-----~-~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~----~------~~~~~~a~~ 156 (236)
.+|-++..+..+ . +.........++..|..++.-.-..--...+|.++..+-.. + -..+..|+.
T Consensus 211 LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ 290 (343)
T cd08050 211 LLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAAR 290 (343)
T ss_pred hhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHH
Confidence 556666666533 1 24455566677777777664333322255778888666331 1 257788999
Q ss_pred HHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChh-hHHHHHHHHHHHH
Q 044293 157 SLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAE-DLAGTSLAVLNLL 203 (236)
Q Consensus 157 aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~-~~~~~a~~~L~~l 203 (236)
.|..+|........-++..++..+.+.+.+...+ ...-.|+..|..+
T Consensus 291 ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 291 LLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 9999987443333223455555677766654322 2233455555544
No 361
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.11 E-value=1.5e+02 Score=26.70 Aligned_cols=69 Identities=12% Similarity=0.099 Sum_probs=51.3
Q ss_pred cCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCC--CChHHHHHhCcHHHHHHHhcCC-ChhhHHHHHHHHHH
Q 044293 133 AGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFH--GNSTLAVRAGAVSELIHLIGST-EAEDLAGTSLAVLN 201 (236)
Q Consensus 133 ~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~--~~~~~~~~~g~i~~lv~ll~~~-~~~~~~~~a~~~L~ 201 (236)
..++..|.+-+.+.++.+...|+..|-.+..+. .....+.+.++++-+|...+.. ....+++.++..|.
T Consensus 37 ~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~ 108 (470)
T KOG1087|consen 37 KEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELID 108 (470)
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHH
Confidence 467777888888888888888888665555533 3345678889999999999776 44678888887775
No 362
>PF12331 DUF3636: Protein of unknown function (DUF3636) ; InterPro: IPR022093 This domain family is found in eukaryotes, and is approximately 160 amino acids in length.
Probab=26.91 E-value=1.4e+02 Score=22.21 Aligned_cols=39 Identities=21% Similarity=0.198 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHHcCChhhHHHHHhcCCcHHHHHHHhhC
Q 044293 191 DLAGTSLAVLNLLARFDEGMIALTKTDQIVSLMVDVLKG 229 (236)
Q Consensus 191 ~~~~~a~~~L~~l~~~~~~~~~i~~~g~~i~~lv~~l~~ 229 (236)
.++-.|+..|..++.++-+..++..+.-.++.++..|..
T Consensus 109 ~lRl~aL~~L~~fa~s~~G~~~LA~h~~Ai~RLv~~L~~ 147 (149)
T PF12331_consen 109 TLRLEALRTLTSFAFSPFGALQLASHPTAIPRLVRALHD 147 (149)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHhCchhHHHHHHHHHc
Confidence 456688999999999999999999988779999988753
No 363
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.74 E-value=4.1e+02 Score=27.91 Aligned_cols=73 Identities=14% Similarity=0.078 Sum_probs=45.3
Q ss_pred HhHHHHHHHHh-cCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCC
Q 044293 7 RETINNCVSRS-QSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSL 80 (236)
Q Consensus 7 ~~~i~~lv~~L-~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~ 80 (236)
++.++.+-... .+++..++...+..++.....+--.-...... ++-..+..++...+.++++.|+.+|.-+-.
T Consensus 1525 ~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~-dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~ 1598 (1710)
T KOG1851|consen 1525 PEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRD-DIRKLLESLLNDDQIEVREEAAKCLSGLLQ 1598 (1710)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHH-HHHHHHHHHHcchHHHHHHHHHHHHHHHHh
Confidence 44555555433 35567788888888877665532221222233 555666677877777899999988876543
No 364
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=26.47 E-value=2.6e+02 Score=20.44 Aligned_cols=72 Identities=10% Similarity=0.107 Sum_probs=49.6
Q ss_pred ccHHHHHHHHhccCCHHHHHHHHHHHHHhcccch--hhhhhcccCcHHH-HHHhhcCC---CcHHHHHHHHHHHHHhc
Q 044293 92 ETIYRLNWIIQSSSSQETVKLASSLICSLAMLDK--NKARFGVAGTVQV-LVKAVSAP---SNPAGHHLLSSLAELVQ 163 (236)
Q Consensus 92 g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~--~~~~i~~~g~i~~-Lv~lL~~~---~~~~~~~a~~aL~~L~~ 163 (236)
.++..|-+-|+++.++.++..|+.+|-.+..+-. ...++...+++.. |++++... +..++...+..+...+.
T Consensus 38 ~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 38 DAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 4566777777654367788888888777776653 4456667889987 99999642 23667777777766554
No 365
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=25.37 E-value=1.5e+02 Score=18.43 Aligned_cols=32 Identities=28% Similarity=0.165 Sum_probs=26.1
Q ss_pred cccHHHHHHHHhccC-CHHHHHHHHHHHHHhcc
Q 044293 91 METIYRLNWIIQSSS-SQETVKLASSLICSLAM 122 (236)
Q Consensus 91 ~g~i~~L~~lL~~~~-~~~~~~~a~~~L~~Ls~ 122 (236)
.|+...++.++.+.. +..+|..|+..|.|...
T Consensus 13 p~~~~~l~~il~~~~~~~~~R~~A~i~LKn~I~ 45 (77)
T PF03810_consen 13 PGFWQYLLQILSSNSQDPEVRQLAAILLKNLIK 45 (77)
T ss_dssp TCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 588999999995443 78999999999998754
No 366
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=24.68 E-value=6.5e+02 Score=24.42 Aligned_cols=155 Identities=12% Similarity=-0.017 Sum_probs=83.6
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCC--------ChHHHHHHHHHHHhh
Q 044293 7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSS--------SPIIRTLSLSILLNL 78 (236)
Q Consensus 7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~--------~~~~~~~a~~~L~~l 78 (236)
.+.|.+=.+....+.... ..|+..+...... ..++.+. |.++.+++.|... ++.-.+.|++.+.++
T Consensus 370 ~eyirry~df~d~g~spd-laal~fl~~~~sK--rke~Tfq---giLsf~~sil~qsaa~psn~dnarq~egalr~lasi 443 (970)
T COG5656 370 DEYIRRYYDFFDNGLSPD-LAALFFLIISKSK--RKEETFQ---GILSFLLSILGQSAATPSNIDNARQAEGALRLLASI 443 (970)
T ss_pred HHHHHHhcchhcCCCChh-HHHHHHHHHHhcc--cchhhhh---hHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHH
Confidence 445555555554433211 2344444444433 2233343 8999999999421 223345566666665
Q ss_pred CC--C-CchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHH
Q 044293 79 SL--N-PDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLL 155 (236)
Q Consensus 79 ~~--~-~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~ 155 (236)
.. . +..-..+.+.=.++.++-.+++. .--.+.+|+-.+..++.+- +..-.-..+.+.....+++.+-+++..|+
T Consensus 444 ~s~itk~sp~an~me~fiv~hv~P~f~s~-ygfL~Srace~is~~eeDf--kd~~ill~aye~t~ncl~nn~lpv~ieAa 520 (970)
T COG5656 444 KSFITKMSPAANVMEYFIVNHVIPAFRSN-YGFLKSRACEFISTIEEDF--KDNGILLEAYENTHNCLKNNHLPVMIEAA 520 (970)
T ss_pred HHHhccCchHHHHHHHHHHHHhhHhhcCc-ccchHHHHHHHHHHHHHhc--ccchHHHHHHHHHHHHHhcCCcchhhhHH
Confidence 44 1 12223333443444444455554 4567778888888885432 22222234455556666666667888888
Q ss_pred HHHHHHhcCCCChHH
Q 044293 156 SSLAELVQFHGNSTL 170 (236)
Q Consensus 156 ~aL~~L~~~~~~~~~ 170 (236)
.||.-+-.+.+....
T Consensus 521 lAlq~fi~~~q~h~k 535 (970)
T COG5656 521 LALQFFIFNEQSHEK 535 (970)
T ss_pred HHHHHHHhchhhhHH
Confidence 888777666544333
No 367
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=24.43 E-value=3.7e+02 Score=21.46 Aligned_cols=65 Identities=17% Similarity=0.100 Sum_probs=41.8
Q ss_pred HHHHHhhCCCCchhHHhhhcccHHHHHHHH-hccCCHHHHHHHHHHHHHhcccchhhhhhcc-cCcHHHHHHhhcCC
Q 044293 72 LSILLNLSLNPDLKQSLASMETIYRLNWII-QSSSSQETVKLASSLICSLAMLDKNKARFGV-AGTVQVLVKAVSAP 146 (236)
Q Consensus 72 ~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL-~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~ 146 (236)
+..+..++....+ .....++.+..+| +++ ++..+..+..+|..|+. ..+.+ ...-..+.+.+..+
T Consensus 105 a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~-~~~~~alale~l~~Lc~-----~~vvd~~s~w~vl~~~l~~~ 171 (234)
T PF12530_consen 105 AASIRDICCSRPD----HGVDLLPLLSGCLNQSC-DEVAQALALEALAPLCE-----AEVVDFYSAWKVLQKKLSLD 171 (234)
T ss_pred HHHHHHHHHhChh----hHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHH-----HhhccHHHHHHHHHHhcCCc
Confidence 4456666655444 3456888999999 566 67888889999999983 22333 34445555555444
No 368
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=24.34 E-value=1.1e+02 Score=15.29 Aligned_cols=27 Identities=22% Similarity=0.191 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcC
Q 044293 109 TVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSA 145 (236)
Q Consensus 109 ~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~ 145 (236)
++..|+.+|.++.. ..+++.|++.+.+
T Consensus 3 vR~~aa~aLg~~~~----------~~a~~~L~~~l~d 29 (30)
T smart00567 3 VRHEAAFALGQLGD----------EEAVPALIKALED 29 (30)
T ss_pred HHHHHHHHHHHcCC----------HhHHHHHHHHhcC
Confidence 56677777777632 3456666666643
No 369
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=24.07 E-value=2e+02 Score=20.26 Aligned_cols=53 Identities=17% Similarity=0.196 Sum_probs=34.8
Q ss_pred hHHHhHHHHHHHHh---cCCCHHHHHHHHHHHHHHhcCC-hHHHHHHHhccCcHHHH
Q 044293 4 PRVRETINNCVSRS---QSDSYEDQQKALQTLASITRVS-PQYRSLLAQTDGAISTL 56 (236)
Q Consensus 4 ~~~~~~i~~lv~~L---~~~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~~g~i~~L 56 (236)
.+....+..+.+.| +..+....-+|+..|..|..++ +.....+......|..|
T Consensus 35 ~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~~~~~~~I~~l 91 (125)
T PF01417_consen 35 KDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDELRDHIDIIREL 91 (125)
T ss_dssp HHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHHHHHTHHHHHGG
T ss_pred ccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHhhc
Confidence 45677788888888 4566778888999998888764 34445554332334444
No 370
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=23.76 E-value=2.3e+02 Score=20.88 Aligned_cols=111 Identities=13% Similarity=0.068 Sum_probs=58.0
Q ss_pred CCchHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHH---HHh
Q 044293 1 MSAPRVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSI---LLN 77 (236)
Q Consensus 1 ~~~~~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~---L~~ 77 (236)
|.+++++-.-..+++.|..+-++.+..|--+|.+ ..-.+ +..+.+++-|..++-..|.+.... |+.
T Consensus 1 mDpFE~r~~F~~~L~~L~aS~qSi~kaa~fAlk~-~~~~e----------dL~~cIle~le~~~lN~R~nI~~fID~l~e 69 (139)
T PF12243_consen 1 MDPFEVRMQFTQLLRRLNASQQSIQKAAQFALKN-RDMEE----------DLWSCILEQLEKENLNTRINIFYFIDSLCE 69 (139)
T ss_pred CChHHHHHHHHHHHHHcchhHHHHHHHHHHHHHc-cccHH----------HHHHHHHHHHhccchhhHHHHHHHHHHHHH
Confidence 7788888888888888876666677766666665 22112 455555566666554444443333 333
Q ss_pred hCCCCc--hhHHhh-hcccHHHHHHHHhccCCH--HHHHHHHHHHHHhcc
Q 044293 78 LSLNPD--LKQSLA-SMETIYRLNWIIQSSSSQ--ETVKLASSLICSLAM 122 (236)
Q Consensus 78 l~~~~~--~~~~i~-~~g~i~~L~~lL~~~~~~--~~~~~a~~~L~~Ls~ 122 (236)
.+.... +...+. -..-++.++...-++++. .-+.++-..|.++..
T Consensus 70 ~~~~~~~~~~~Yv~~l~~dL~~Iv~~V~P~~~~g~~N~~~~~kvL~~~~~ 119 (139)
T PF12243_consen 70 SSQKSKKYNYPYVSMLQRDLPRIVDAVAPPDNSGAANLKSVRKVLKNWSK 119 (139)
T ss_pred HHHhcccccchhHHHHHHHHHHHHHHhCCCCCccchHHHHHHHHHHHHHH
Confidence 333333 222221 123445555544433222 344555555555544
No 371
>PLN03205 ATR interacting protein; Provisional
Probab=23.51 E-value=4.1e+02 Score=23.65 Aligned_cols=116 Identities=12% Similarity=0.042 Sum_probs=60.2
Q ss_pred cHHHHHHHHhccCCHHHHHHHHHHHHHhcccc-hhhhhhc---ccCcHHHHHHhhcC----C-CcHHHHHHHHHHHHHhc
Q 044293 93 TIYRLNWIIQSSSSQETVKLASSLICSLAMLD-KNKARFG---VAGTVQVLVKAVSA----P-SNPAGHHLLSSLAELVQ 163 (236)
Q Consensus 93 ~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~---~~g~i~~Lv~lL~~----~-~~~~~~~a~~aL~~L~~ 163 (236)
.+++|+++..-+ +..+...+.+.|..+-.+- .++..+. +.+.+ .|+.++.+ . ...++-.|+..+.-+..
T Consensus 324 LlEaLLdLC~v~-n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWv-sLfElm~QiAv~~TEE~VrLEAvSIMnVIlm 401 (652)
T PLN03205 324 LVEPLLDLCKAE-TAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWH-SLFELMNQIASIRTEEDVKLEALSIMNIIVM 401 (652)
T ss_pred HHHHHHHHHhcC-chhhhHHHHHHHHHHHHHHhCCcccccccccccHH-HHHHHHHHHHhccchhheeeehhhhhHHhhh
Confidence 445566666655 5555666665554332211 1222222 12222 23333332 1 12244555655544443
Q ss_pred C---CCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChhhH
Q 044293 164 F---HGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGM 210 (236)
Q Consensus 164 ~---~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~ 210 (236)
. .-.|+.+.+.-++..+-++|+....--+++.++-.|.-|..+|..-
T Consensus 402 ssna~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLNCpklL 451 (652)
T PLN03205 402 STDAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLNCPKLY 451 (652)
T ss_pred ccchhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHcCcHHH
Confidence 2 2346667777778888899976533457777877777665555433
No 372
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=22.99 E-value=4.6e+02 Score=22.11 Aligned_cols=122 Identities=15% Similarity=0.199 Sum_probs=77.9
Q ss_pred HHHHHhccCcHHHHHhhccC---C----C--------------h--HHHHHHHHHHHhhCCCCchhHHh-----------
Q 044293 43 RSLLAQTDGAISTLLGLSKS---S----S--------------P--IIRTLSLSILLNLSLNPDLKQSL----------- 88 (236)
Q Consensus 43 ~~~i~~~~g~i~~Lv~lL~~---~----~--------------~--~~~~~a~~~L~~l~~~~~~~~~i----------- 88 (236)
+..+.+. |.||.|-++.+. . + | ..+..-++.+.+++.++.++..+
T Consensus 2 q~~l~~~-~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~ 80 (303)
T PF12463_consen 2 QTRLAEL-GLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVES 80 (303)
T ss_pred hHHHHHc-CCHhHHHHHHHhccCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCccccc
Confidence 3456777 888888877542 1 1 1 24555677888888755433211
Q ss_pred -----------hhcccHHHHHHHHhccC-CHHHHHHHHHHHHHhcccchh---hhhhcccCcHHHHHHhhcCCCc---HH
Q 044293 89 -----------ASMETIYRLNWIIQSSS-SQETVKLASSLICSLAMLDKN---KARFGVAGTVQVLVKAVSAPSN---PA 150 (236)
Q Consensus 89 -----------~~~g~i~~L~~lL~~~~-~~~~~~~a~~~L~~Ls~~~~~---~~~i~~~g~i~~Lv~lL~~~~~---~~ 150 (236)
.+.|.+..+++.+.... +...+---+.++-..-+.... +.-+.+.|.++.|+..+-++.. .+
T Consensus 81 ~~~~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v 160 (303)
T PF12463_consen 81 ELNSNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEV 160 (303)
T ss_pred cccccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHH
Confidence 14578888888887542 444555566666666555433 3335569999999988876532 46
Q ss_pred HHHHHHHHHHHhcCC
Q 044293 151 GHHLLSSLAELVQFH 165 (236)
Q Consensus 151 ~~~a~~aL~~L~~~~ 165 (236)
.......|+.|....
T Consensus 161 ~Q~~FDLLGELiK~n 175 (303)
T PF12463_consen 161 LQSNFDLLGELIKFN 175 (303)
T ss_pred HHHHHHHHHHHHCCC
Confidence 677778888877643
No 373
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=22.62 E-value=3.1e+02 Score=24.12 Aligned_cols=58 Identities=12% Similarity=0.111 Sum_probs=37.0
Q ss_pred hhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHh
Q 044293 127 KARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLI 184 (236)
Q Consensus 127 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll 184 (236)
.........+..|+.++.+++++.+......|..+-..-.+....+.......+++.+
T Consensus 126 ~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi 183 (409)
T PF01603_consen 126 AKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFI 183 (409)
T ss_dssp CTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Confidence 3344567899999999999999999988888888665433333333333333333333
No 374
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=21.83 E-value=5.8e+02 Score=25.68 Aligned_cols=91 Identities=13% Similarity=0.068 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCC-ChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHH
Q 044293 23 EDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSS-SPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWII 101 (236)
Q Consensus 23 ~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL 101 (236)
-++..+.-+|.++|..++. +.+ -.+|.|++=|... ...+|.+..-+++.+|. +--++-.--||.+...|
T Consensus 946 ~vra~~vvTlakmcLah~~----LaK--r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~----~YTam~d~YiP~I~~~L 1015 (1529)
T KOG0413|consen 946 KVRAVGVVTLAKMCLAHDR----LAK--RLMPMLVKELEYNTAHAIRNNIVLAMGDICS----SYTAMTDRYIPMIAASL 1015 (1529)
T ss_pred HHHHHHHHHHHHHHhhhhH----HHH--HHHHHHHHHHHhhhHHHHhcceeeeehhhHH----HHHHHHHHhhHHHHHHh
Confidence 3566777788888876443 233 4789999877643 34455554444444443 22223345789999999
Q ss_pred hccCCHHHHHHHHHHHHHhcccc
Q 044293 102 QSSSSQETVKLASSLICSLAMLD 124 (236)
Q Consensus 102 ~~~~~~~~~~~a~~~L~~Ls~~~ 124 (236)
... ++-+++++.-.|.+|-..+
T Consensus 1016 ~Dp-~~iVRrqt~ilL~rLLq~~ 1037 (1529)
T KOG0413|consen 1016 CDP-SVIVRRQTIILLARLLQFG 1037 (1529)
T ss_pred cCc-hHHHHHHHHHHHHHHHhhh
Confidence 888 7889999999999887655
No 375
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=21.53 E-value=4.1e+02 Score=25.98 Aligned_cols=144 Identities=21% Similarity=0.223 Sum_probs=0.0
Q ss_pred hHHHHHHHhccCcHHHHHhhccCC-ChHHHHHHHHHHHhhCCC-----Cch--hHHhhhcccHHHHHHHHhccCCHHHHH
Q 044293 40 PQYRSLLAQTDGAISTLLGLSKSS-SPIIRTLSLSILLNLSLN-----PDL--KQSLASMETIYRLNWIIQSSSSQETVK 111 (236)
Q Consensus 40 ~~~~~~i~~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~-----~~~--~~~i~~~g~i~~L~~lL~~~~~~~~~~ 111 (236)
...-+.+.+. ..++.++.++.+. ++.++.+|...|+.++.. ..+ -..+.....|..|+..+-.+ ....-.
T Consensus 180 ~~Viq~l~d~-~li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~e~ieqLl~~ml~~-~~s~s~ 257 (838)
T KOG2073|consen 180 TDVIQWLNDQ-ELIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESPETIEQLLKIMLED-GTSLSV 257 (838)
T ss_pred HHHHHHHhhH-HHHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCHHHHHHHHHHHccC-Ccchhh
Q ss_pred HHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhh
Q 044293 112 LASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAED 191 (236)
Q Consensus 112 ~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~ 191 (236)
-...+...++....-+..+.-......+.+=....++.+....+.++ .+-++-++++|...+...
T Consensus 258 lVs~i~vlI~ll~~~r~~~~~~~~~~i~~q~~~~~d~~~~~~~l~~~---------------~p~L~dF~~lL~~~~~~~ 322 (838)
T KOG2073|consen 258 LVSGIIVLISLLNPRRDTVETNSTTTILSQPPSERDPIVLNELLGAM---------------EPRLGDFVQLLLEPEKLD 322 (838)
T ss_pred HHHHHHHHHHhcCcccccccccceeeeecCCccccCccchHHHHHHH---------------HHHHHHHHHHhcCCccch
Q ss_pred HHHHHHHHH
Q 044293 192 LAGTSLAVL 200 (236)
Q Consensus 192 ~~~~a~~~L 200 (236)
+.+.....|
T Consensus 323 ~l~tt~g~l 331 (838)
T KOG2073|consen 323 LLETTYGEL 331 (838)
T ss_pred hhhhhhhcc
No 376
>KOG3533 consensus Inositol 1,4,5-trisphosphate receptor [Signal transduction mechanisms]
Probab=21.46 E-value=5.1e+02 Score=27.19 Aligned_cols=95 Identities=17% Similarity=0.162 Sum_probs=68.2
Q ss_pred cCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCC--CC--hHHHHHhCcHHHHHHHhcCC-----C-----hhhHHHHHHH
Q 044293 133 AGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFH--GN--STLAVRAGAVSELIHLIGST-----E-----AEDLAGTSLA 198 (236)
Q Consensus 133 ~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~--~~--~~~~~~~g~i~~lv~ll~~~-----~-----~~~~~~~a~~ 198 (236)
.|++..|--.+...|.......+.+|...|..| +| |...-+.+++..++.|+-.. + --++..+|-+
T Consensus 1992 tGgLGllGlyInE~NvaLinQtLetLTEyCQGPCHENQnciathEsNGldII~aLiLNdInPLgk~rMdLvLelKnnASK 2071 (2706)
T KOG3533|consen 1992 TGGLGLLGLYINEHNVALINQTLETLTEYCQGPCHENQNCIATHESNGLDIIIALILNDINPLGKDRMDLVLELKNNASK 2071 (2706)
T ss_pred CCCceeeeeeeccchhHHHHHHHHHHHHHhcCCccCCcceeeecccCCchhhHHHHhccCCchhhhHHHHHHHHhhhHHH
Confidence 577776666778888889999999999999853 44 55556779999988887432 1 1245567777
Q ss_pred HHHHHc---CChhhHHHHHhcCCcHHHHHHHhh
Q 044293 199 VLNLLA---RFDEGMIALTKTDQIVSLMVDVLK 228 (236)
Q Consensus 199 ~L~~l~---~~~~~~~~i~~~g~~i~~lv~~l~ 228 (236)
.|..+. .+.++.+.+...=. ...||++++
T Consensus 2072 LLLAiMESRhDsENAeRiL~nm~-PkqLV~vik 2103 (2706)
T KOG3533|consen 2072 LLLAIMESRHDSENAERILRNMR-PKQLVHVIK 2103 (2706)
T ss_pred HHHHHHHhcccchhHHHHHHhcC-HHHHHHHHH
Confidence 777664 24588888877665 677888765
No 377
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=21.13 E-value=7.2e+02 Score=23.61 Aligned_cols=137 Identities=15% Similarity=0.112 Sum_probs=83.3
Q ss_pred CcHHHHHhhccCCChHHHHHHHHHHHh-hCCCCchhHHhhhcccHHHHHHH-HhccCCHHHHHHHHHHHHHhcccchhhh
Q 044293 51 GAISTLLGLSKSSSPIIRTLSLSILLN-LSLNPDLKQSLASMETIYRLNWI-IQSSSSQETVKLASSLICSLAMLDKNKA 128 (236)
Q Consensus 51 g~i~~Lv~lL~~~~~~~~~~a~~~L~~-l~~~~~~~~~i~~~g~i~~L~~l-L~~~~~~~~~~~a~~~L~~Ls~~~~~~~ 128 (236)
.-|..|+.+|.+.+....+.+-..+.. +....+. -.+..|++. ++++ +. .++.+|..+-...
T Consensus 4 ~~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~-------~l~~~l~~y~~~t~-s~----~~~~il~~~~~P~---- 67 (668)
T PF04388_consen 4 ASITELLSLLESNDLSVLEEIKALLQELLNSDREP-------WLVNGLVDYYLSTN-SQ----RALEILVGVQEPH---- 67 (668)
T ss_pred ccHHHHHHHhcCCchhhHHHHHHHHHHHhhccchH-------HHHHHHHHHHhhcC-cH----HHHHHHHhcCCcc----
Confidence 357888899988887777776666653 3332221 134455554 3333 22 2344444332211
Q ss_pred hhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcC-CCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHc-CC
Q 044293 129 RFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQF-HGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLA-RF 206 (236)
Q Consensus 129 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~-~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~-~~ 206 (236)
+..++..|=..+..+ ..+..++..|+.+... +.....+.+...++.|+..|....+..+...|+.+|..|. .-
T Consensus 68 ---~K~~~~~l~~~~~~~--~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~i 142 (668)
T PF04388_consen 68 ---DKHLFDKLNDYFVKP--SYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHI 142 (668)
T ss_pred ---HHHHHHHHHHHHcCc--hhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccc
Confidence 123345555555544 5677888888888875 5666778888999999999976544666677777777654 34
Q ss_pred hh
Q 044293 207 DE 208 (236)
Q Consensus 207 ~~ 208 (236)
+.
T Consensus 143 p~ 144 (668)
T PF04388_consen 143 PS 144 (668)
T ss_pred cc
Confidence 43
No 378
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=20.93 E-value=4.7e+02 Score=21.37 Aligned_cols=40 Identities=18% Similarity=0.150 Sum_probs=20.5
Q ss_pred HHHHHHHHhcCCCHH--HHHHHHHHHHHHhcCChHHHHHHHh
Q 044293 9 TINNCVSRSQSDSYE--DQQKALQTLASITRVSPQYRSLLAQ 48 (236)
Q Consensus 9 ~i~~lv~~L~~~~~~--~~~~a~~~L~~l~~~~~~~~~~i~~ 48 (236)
-++.|.+++.+++.. ++..|..+|..++..++.-|+.+.+
T Consensus 112 ~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~ 153 (249)
T PF06685_consen 112 DIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQ 153 (249)
T ss_pred CHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 344444455444322 3455666666666655555555553
No 379
>PF12331 DUF3636: Protein of unknown function (DUF3636) ; InterPro: IPR022093 This domain family is found in eukaryotes, and is approximately 160 amino acids in length.
Probab=20.73 E-value=1.8e+02 Score=21.74 Aligned_cols=53 Identities=21% Similarity=0.176 Sum_probs=39.5
Q ss_pred CcHHHHHhhccCCC--------------hHHHHHHHHHHHhhCCCCchhHHhh-hcccHHHHHHHHhc
Q 044293 51 GAISTLLGLSKSSS--------------PIIRTLSLSILLNLSLNPDLKQSLA-SMETIYRLNWIIQS 103 (236)
Q Consensus 51 g~i~~Lv~lL~~~~--------------~~~~~~a~~~L~~l~~~~~~~~~i~-~~g~i~~L~~lL~~ 103 (236)
=+|..+-.+|...- -.+|-.|+..|..++..+-+...++ ..-+|+.|+..|..
T Consensus 80 ~iIdrvt~~L~E~P~~d~~~~~~t~~~i~~lRl~aL~~L~~fa~s~~G~~~LA~h~~Ai~RLv~~L~~ 147 (149)
T PF12331_consen 80 YIIDRVTNLLSEPPKVDEGWAPYTPAEICTLRLEALRTLTSFAFSPFGALQLASHPTAIPRLVRALHD 147 (149)
T ss_pred HHHHHHHHHccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHHhCchhHHHHHHHHHc
Confidence 36666777765321 1457889999999999998877777 56799999998853
No 380
>KOG2152 consensus Sister chromatid cohesion protein [Cell cycle control, cell division, chromosome partitioning]
Probab=20.63 E-value=2.8e+02 Score=26.54 Aligned_cols=54 Identities=11% Similarity=0.165 Sum_probs=36.1
Q ss_pred cHHHHHHhhcCCCcHHHHHHHHHH--HHHhcCCCChHHHHHhCcHHHHHHHhcCCC
Q 044293 135 TVQVLVKAVSAPSNPAGHHLLSSL--AELVQFHGNSTLAVRAGAVSELIHLIGSTE 188 (236)
Q Consensus 135 ~i~~Lv~lL~~~~~~~~~~a~~aL--~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~ 188 (236)
-+.+++.-+++...+....|+.+| ..=|..+..|..+...|++..+++.|.+..
T Consensus 333 d~~yiLStlq~~~~~m~trCLSaISla~Kc~~p~FR~~lRa~G~v~~vfkalmDs~ 388 (865)
T KOG2152|consen 333 DLEYILSTLQSALLPMETRCLSAISLADKCVMPDFRMHLRAHGMVDAVFKALMDSH 388 (865)
T ss_pred hHHHHHhhhhhccccHHHHHHhhhhhhhhccChHHHHHHHHcccHHHHHHHHhccc
Confidence 355666666655223333444443 445667888999999999999999998764
Done!