Query 044293
Match_columns 236
No_of_seqs 122 out of 1135
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 23:15:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044293.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044293hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nmw_A APC variant protein; AR 100.0 6.8E-33 2.3E-37 234.7 17.7 225 7-234 72-321 (354)
2 3nmz_A APC variant protein; pr 100.0 1.6E-31 5.4E-36 232.8 18.0 225 7-233 188-436 (458)
3 4hxt_A De novo protein OR329; 100.0 4.2E-30 1.4E-34 206.5 21.7 222 8-233 2-227 (252)
4 3tt9_A Plakophilin-2; cell adh 100.0 5.4E-31 1.9E-35 209.9 14.1 200 5-206 5-230 (233)
5 1xm9_A Plakophilin 1; armadill 100.0 1.1E-30 3.9E-35 228.7 17.4 175 9-186 3-196 (457)
6 4db8_A Armadillo-repeat protei 100.0 6.2E-30 2.1E-34 206.3 18.7 223 7-233 11-237 (252)
7 1xm9_A Plakophilin 1; armadill 100.0 6.2E-29 2.1E-33 217.6 24.8 221 7-232 43-385 (457)
8 3nmw_A APC variant protein; AR 100.0 2.6E-29 8.8E-34 212.7 18.8 199 8-208 127-337 (354)
9 3l6x_A Catenin delta-1; cateni 100.0 2.7E-29 9.2E-34 223.6 19.2 198 7-206 47-271 (584)
10 4db6_A Armadillo repeat protei 100.0 3.5E-28 1.2E-32 191.0 21.4 199 5-206 9-210 (210)
11 3nmz_A APC variant protein; pr 100.0 2.3E-28 7.8E-33 212.9 17.9 199 7-207 242-452 (458)
12 3l6x_A Catenin delta-1; cateni 100.0 4.9E-28 1.7E-32 215.5 17.1 224 7-233 89-370 (584)
13 3now_A UNC-45 protein, SD10334 100.0 1.1E-27 3.8E-32 219.8 18.4 225 5-232 374-637 (810)
14 4db8_A Armadillo-repeat protei 100.0 4.5E-27 1.5E-31 189.5 19.5 197 7-206 53-252 (252)
15 3now_A UNC-45 protein, SD10334 100.0 5.2E-27 1.8E-31 215.3 19.6 222 8-233 495-723 (810)
16 3tt9_A Plakophilin-2; cell adh 99.9 1.5E-27 5.1E-32 190.0 13.8 178 51-230 8-206 (233)
17 3ul1_B Importin subunit alpha- 99.9 1.4E-26 4.8E-31 205.3 20.4 223 7-232 99-330 (510)
18 4hxt_A De novo protein OR329; 99.9 4.8E-26 1.6E-30 182.8 20.5 198 8-208 44-244 (252)
19 3tpo_A Importin subunit alpha- 99.9 7.2E-26 2.5E-30 201.5 22.5 223 7-232 118-349 (529)
20 3ul1_B Importin subunit alpha- 99.9 1.6E-25 5.4E-30 198.5 21.9 220 9-232 58-288 (510)
21 1xqr_A HSPBP1 protein; armadil 99.9 7.9E-25 2.7E-29 180.9 23.8 208 4-214 24-248 (296)
22 4b8j_A Importin subunit alpha- 99.9 5.8E-25 2E-29 195.2 22.4 221 7-230 116-340 (528)
23 1jdh_A Beta-catenin; beta-cate 99.9 2.6E-25 8.8E-30 196.8 18.9 223 6-231 15-240 (529)
24 3tpo_A Importin subunit alpha- 99.9 1.2E-24 4.3E-29 193.5 23.1 222 5-230 248-480 (529)
25 4b8j_A Importin subunit alpha- 99.9 1.4E-24 4.9E-29 192.7 21.9 222 7-232 73-300 (528)
26 4db6_A Armadillo repeat protei 99.9 4.3E-25 1.5E-29 173.3 15.9 180 51-233 12-195 (210)
27 2z6h_A Catenin beta-1, beta-ca 99.9 1.6E-24 5.4E-29 197.0 19.3 222 7-231 13-237 (644)
28 1jdh_A Beta-catenin; beta-cate 99.9 3.7E-24 1.3E-28 189.3 20.6 223 7-232 265-515 (529)
29 1wa5_B Importin alpha subunit; 99.9 7.5E-24 2.6E-28 188.3 21.9 221 7-231 129-354 (530)
30 1wa5_B Importin alpha subunit; 99.9 2.7E-23 9.3E-28 184.7 23.9 223 6-232 85-313 (530)
31 2jdq_A Importin alpha-1 subuni 99.9 1.1E-22 3.7E-27 176.3 25.2 221 8-232 64-290 (450)
32 2z6h_A Catenin beta-1, beta-ca 99.9 2.7E-23 9.3E-28 188.9 22.2 223 7-232 262-512 (644)
33 2jdq_A Importin alpha-1 subuni 99.9 9.2E-23 3.2E-27 176.8 23.0 221 7-232 106-332 (450)
34 2z6g_A B-catenin; FULL-length, 99.9 3.3E-23 1.1E-27 192.0 20.7 224 6-232 397-648 (780)
35 2z6g_A B-catenin; FULL-length, 99.9 2.3E-23 7.7E-28 193.1 18.4 222 7-231 149-373 (780)
36 1xqr_A HSPBP1 protein; armadil 99.9 7.7E-22 2.6E-26 163.0 19.8 199 7-207 80-289 (296)
37 3opb_A SWI5-dependent HO expre 99.9 7E-21 2.4E-25 172.5 15.3 224 7-233 375-669 (778)
38 3opb_A SWI5-dependent HO expre 99.8 6.8E-20 2.3E-24 166.1 19.1 224 5-231 331-619 (778)
39 3grl_A General vesicular trans 99.6 6.4E-14 2.2E-18 124.4 20.7 210 7-216 121-354 (651)
40 3grl_A General vesicular trans 99.6 2.3E-14 7.8E-19 127.3 16.8 219 5-230 18-266 (651)
41 3ltm_A Alpha-REP4; protein eng 99.4 3.1E-11 1E-15 94.2 19.5 155 7-205 18-172 (211)
42 3ltj_A Alpharep-4; protein eng 99.4 5.7E-11 2E-15 91.9 19.2 154 7-204 13-166 (201)
43 3ltm_A Alpha-REP4; protein eng 99.3 1E-10 3.5E-15 91.2 17.3 158 8-209 50-207 (211)
44 3ltj_A Alpharep-4; protein eng 99.3 3.5E-10 1.2E-14 87.4 16.9 153 8-204 45-197 (201)
45 1oyz_A Hypothetical protein YI 99.3 3.4E-10 1.1E-14 92.0 17.4 187 7-231 22-236 (280)
46 4gmo_A Putative uncharacterize 99.2 3.5E-11 1.2E-15 110.0 11.2 193 8-204 34-257 (684)
47 4gmo_A Putative uncharacterize 99.2 2.4E-11 8.2E-16 111.1 9.6 167 51-218 34-228 (684)
48 1oyz_A Hypothetical protein YI 99.2 1.1E-09 3.8E-14 89.0 17.3 180 8-230 54-264 (280)
49 4fdd_A Transportin-1; heat rep 99.0 1.8E-09 6E-14 100.9 10.7 217 7-231 214-455 (852)
50 2vgl_B AP-2 complex subunit be 98.9 2E-08 6.9E-13 90.3 15.2 189 4-204 117-310 (591)
51 4fdd_A Transportin-1; heat rep 98.9 1.6E-08 5.6E-13 94.4 14.4 218 6-232 172-414 (852)
52 1b3u_A Protein (protein phosph 98.9 7.5E-08 2.6E-12 85.5 16.4 188 7-204 163-352 (588)
53 2qk2_A LP04448P; mini spindles 98.9 1.1E-08 3.7E-13 81.5 9.6 188 3-205 9-205 (242)
54 2vgl_B AP-2 complex subunit be 98.8 9.3E-08 3.2E-12 85.9 13.2 206 5-228 46-293 (591)
55 1te4_A Conserved protein MTH18 98.7 2.1E-09 7.1E-14 77.6 1.1 122 5-160 9-130 (131)
56 1b3u_A Protein (protein phosph 98.7 2.3E-07 7.9E-12 82.3 13.2 185 8-204 402-586 (588)
57 3b2a_A TON_1937, putative unch 98.6 2.5E-06 8.6E-11 66.6 16.1 187 7-207 32-220 (265)
58 1ibr_B P95, importin beta-1 su 98.6 6.7E-07 2.3E-11 76.9 14.3 217 7-232 171-422 (462)
59 1te4_A Conserved protein MTH18 98.6 8.6E-09 2.9E-13 74.3 1.3 119 51-202 12-130 (131)
60 2qk1_A Protein STU2; STU2P, XM 98.6 4.3E-07 1.5E-11 72.8 10.4 189 12-205 20-220 (249)
61 1ibr_B P95, importin beta-1 su 98.6 7.5E-07 2.6E-11 76.6 12.7 195 7-205 127-357 (462)
62 2qk2_A LP04448P; mini spindles 98.5 2.8E-06 9.5E-11 67.4 13.8 148 5-164 53-206 (242)
63 3b2a_A TON_1937, putative unch 98.5 4.7E-06 1.6E-10 65.1 13.9 152 2-165 69-220 (265)
64 1u6g_C TIP120 protein, CAND1; 98.5 9.8E-07 3.4E-11 85.4 12.2 215 5-230 45-267 (1230)
65 1qgr_A Protein (importin beta 98.4 6.2E-06 2.1E-10 76.6 16.3 218 6-230 364-618 (876)
66 2bpt_A Importin beta-1 subunit 98.4 4.6E-06 1.6E-10 77.3 15.1 218 7-231 368-610 (861)
67 3dad_A FH1/FH2 domain-containi 98.4 2.5E-05 8.7E-10 64.3 17.4 186 8-195 118-326 (339)
68 1w63_A Adapter-related protein 98.4 1.9E-05 6.5E-10 71.3 18.2 189 5-206 139-380 (618)
69 2bpt_A Importin beta-1 subunit 98.4 8.8E-06 3E-10 75.4 16.5 190 7-205 323-529 (861)
70 1u6g_C TIP120 protein, CAND1; 98.4 1.4E-06 4.9E-11 84.3 11.5 211 7-229 5-224 (1230)
71 1w63_A Adapter-related protein 98.3 1.1E-05 3.8E-10 72.8 14.2 182 7-206 69-264 (618)
72 1qgr_A Protein (importin beta 98.2 3.2E-05 1.1E-09 71.8 16.1 192 9-206 218-438 (876)
73 3dad_A FH1/FH2 domain-containi 98.2 6E-05 2E-09 62.1 13.9 172 56-229 123-316 (339)
74 1ho8_A Vacuolar ATP synthase s 98.1 0.00024 8.1E-09 61.4 17.7 220 8-230 77-330 (480)
75 2qk1_A Protein STU2; STU2P, XM 98.1 4.9E-05 1.7E-09 60.7 11.7 156 5-164 57-221 (249)
76 2vgl_A Adaptor protein complex 98.0 0.00032 1.1E-08 63.3 17.1 182 8-206 187-399 (621)
77 1ho8_A Vacuolar ATP synthase s 98.0 0.00059 2E-08 58.9 16.9 190 13-204 172-475 (480)
78 2db0_A 253AA long hypothetical 97.9 0.00099 3.4E-08 50.3 15.9 187 7-213 31-219 (253)
79 2vgl_A Adaptor protein complex 97.8 0.00028 9.5E-09 63.7 13.5 143 8-165 74-218 (621)
80 3tjz_B Coatomer subunit gamma; 97.8 0.00019 6.4E-09 60.2 11.1 178 6-205 137-316 (355)
81 4ffb_C Protein STU2; tubulin f 97.8 0.00078 2.7E-08 54.3 14.4 196 1-205 1-212 (278)
82 2fv2_A RCD1 required for cell 97.7 0.0023 7.9E-08 50.6 14.6 206 9-216 4-235 (268)
83 2fv2_A RCD1 required for cell 97.5 0.0025 8.5E-08 50.4 12.2 147 24-173 72-234 (268)
84 4ady_A RPN2, 26S proteasome re 97.3 0.03 1E-06 52.5 19.6 98 93-205 578-676 (963)
85 2iw3_A Elongation factor 3A; a 97.3 0.019 6.5E-07 54.2 18.2 194 1-203 126-322 (986)
86 2db0_A 253AA long hypothetical 97.3 0.032 1.1E-06 42.2 15.5 105 7-122 106-210 (253)
87 2of3_A ZYG-9; multifunctional 97.2 0.026 8.9E-07 45.2 15.9 175 13-205 51-236 (266)
88 3tjz_B Coatomer subunit gamma; 97.1 0.054 1.8E-06 45.3 17.0 140 51-207 68-207 (355)
89 1upk_A MO25 protein; transfera 97.1 0.038 1.3E-06 45.5 15.6 215 8-229 78-308 (341)
90 3eg5_B Protein diaphanous homo 97.0 0.09 3.1E-06 44.4 18.0 172 12-187 70-276 (383)
91 3ebb_A Phospholipase A2-activa 96.9 0.029 9.9E-07 45.9 14.0 174 24-200 118-300 (304)
92 1wa5_C Importin alpha RE-expor 96.9 0.17 5.9E-06 47.7 20.6 199 19-230 416-653 (960)
93 2iw3_A Elongation factor 3A; a 96.7 0.052 1.8E-06 51.3 15.3 204 8-228 95-304 (986)
94 3u0r_A Apoptosis inhibitor 5; 96.6 0.24 8.2E-06 42.8 17.4 174 19-213 39-216 (507)
95 2f31_A Diaphanous protein homo 96.6 0.069 2.4E-06 41.8 13.4 121 107-229 68-209 (233)
96 4ady_A RPN2, 26S proteasome re 96.6 0.27 9.2E-06 46.2 19.1 168 8-205 472-641 (963)
97 3ebb_A Phospholipase A2-activa 96.5 0.11 3.8E-06 42.4 14.4 170 52-225 104-282 (304)
98 1wa5_C Importin alpha RE-expor 96.4 0.2 6.8E-06 47.3 17.5 186 12-204 459-669 (960)
99 2f31_A Diaphanous protein homo 96.3 0.28 9.5E-06 38.3 15.6 177 14-194 6-217 (233)
100 4ffb_C Protein STU2; tubulin f 96.2 0.067 2.3E-06 42.8 11.3 146 11-164 58-213 (278)
101 3eg5_B Protein diaphanous homo 96.1 0.2 6.9E-06 42.2 14.3 150 78-230 95-276 (383)
102 2x19_B Importin-13; nuclear tr 95.8 0.76 2.6E-05 43.1 18.4 155 61-227 459-621 (963)
103 1lrv_A LRV, leucine-rich repea 95.6 0.0086 3E-07 47.4 3.8 124 15-157 57-193 (244)
104 2of3_A ZYG-9; multifunctional 95.5 0.37 1.3E-05 38.5 12.9 132 18-163 97-236 (266)
105 3c2g_A SYS-1 protein; beta-cat 95.4 0.37 1.3E-05 40.1 12.7 110 75-186 266-378 (619)
106 3oc3_A Helicase MOT1, MOT1; re 95.3 0.012 4.2E-07 51.9 3.7 168 8-201 263-432 (800)
107 2bnx_A Diaphanous protein homo 95.1 0.81 2.8E-05 38.6 14.6 140 6-147 45-215 (386)
108 1upk_A MO25 protein; transfera 95.0 1.3 4.3E-05 36.5 18.8 185 42-231 70-267 (341)
109 2bnx_A Diaphanous protein homo 94.8 1.5 5.3E-05 36.8 17.9 155 28-186 25-213 (386)
110 2x1g_F Cadmus; transport prote 94.8 1 3.4E-05 42.4 15.7 131 63-205 476-615 (971)
111 2x19_B Importin-13; nuclear tr 94.1 1.4 4.9E-05 41.2 15.1 154 18-184 459-621 (963)
112 3ldz_A STAM-1, signal transduc 93.5 0.24 8.2E-06 35.5 6.8 75 4-79 38-113 (140)
113 1mhq_A ADP-ribosylation factor 93.1 0.55 1.9E-05 33.9 8.2 74 4-78 34-114 (148)
114 1x5b_A Signal transducing adap 93.1 0.39 1.3E-05 35.3 7.5 72 5-77 49-122 (163)
115 3oc3_A Helicase MOT1, MOT1; re 92.7 0.29 9.9E-06 43.4 7.1 155 22-204 242-403 (800)
116 4hat_C Exportin-1; heat repeat 92.4 1.5 5E-05 41.9 12.2 153 8-166 447-621 (1023)
117 3g2s_A C-terminal fragment of 92.4 0.63 2.2E-05 33.7 7.6 73 5-78 45-124 (149)
118 1juq_A ADP-ribosylation factor 92.0 0.58 2E-05 34.7 7.2 73 5-78 47-126 (171)
119 1lrv_A LRV, leucine-rich repea 92.0 0.13 4.5E-06 40.6 3.8 101 14-116 80-193 (244)
120 2x1g_F Cadmus; transport prote 91.2 2 6.9E-05 40.3 11.7 177 20-205 518-722 (971)
121 3u0r_A Apoptosis inhibitor 5; 90.1 2.3 8E-05 36.7 9.9 96 7-118 64-159 (507)
122 3qml_C Protein SLS1, nucleotid 89.7 7.2 0.00025 31.6 12.7 147 10-162 24-188 (315)
123 1vdy_A Hypothetical protein (R 89.5 3 0.0001 29.7 8.7 76 6-81 47-131 (140)
124 3m1i_C Exportin-1; heat repeat 89.0 5.3 0.00018 38.0 12.7 181 13-205 53-263 (1049)
125 3m1i_C Exportin-1; heat repeat 88.8 5.1 0.00017 38.1 12.4 139 20-164 465-619 (1049)
126 3zyq_A Hepatocyte growth facto 88.0 1.5 5.2E-05 33.9 6.9 73 6-79 43-117 (226)
127 3l9t_A Putative uncharacterize 86.8 6.7 0.00023 30.6 9.8 139 12-173 74-218 (240)
128 3c2g_A SYS-1 protein; beta-cat 86.8 13 0.00044 31.1 14.9 117 26-145 261-378 (619)
129 4hat_C Exportin-1; heat repeat 86.3 2.6 8.8E-05 40.2 8.6 111 53-164 453-570 (1023)
130 1elk_A Target of MYB1; superhe 84.8 4.2 0.00014 29.5 7.4 73 5-78 50-128 (157)
131 1dvp_A HRS, hepatocyte growth 84.3 2.3 7.7E-05 32.8 6.1 73 5-78 39-113 (220)
132 1lsh_A Lipovitellin (LV-1N, LV 83.8 15 0.0005 35.2 12.6 124 58-207 447-578 (1056)
133 3gs3_A Symplekin, LD45768P; he 83.8 14 0.00049 29.1 11.5 109 5-120 50-171 (257)
134 2xpp_A IWS1, ECU08_0440; trans 83.5 10 0.00035 27.1 10.9 115 1-120 1-134 (145)
135 3ibv_A Exportin-T; karyopherin 82.6 6.2 0.00021 37.4 9.5 144 10-158 191-356 (980)
136 3gjx_A Exportin-1; transport, 82.4 27 0.00093 33.5 13.7 171 20-205 73-275 (1073)
137 3a6p_A Exportin-5; exportin-5, 82.3 21 0.00071 34.6 13.2 132 65-205 110-276 (1204)
138 3gae_A Protein DOA1; UFD3, CDC 81.9 3.7 0.00013 32.3 6.6 101 62-165 101-219 (253)
139 3ibv_A Exportin-T; karyopherin 80.3 40 0.0014 31.9 14.5 66 145-214 204-272 (980)
140 3gs3_A Symplekin, LD45768P; he 78.3 23 0.00078 27.9 14.2 185 10-205 17-243 (257)
141 1lsh_A Lipovitellin (LV-1N, LV 77.3 42 0.0014 32.1 13.3 133 5-165 437-578 (1056)
142 3a6p_A Exportin-5; exportin-5, 76.5 45 0.0015 32.3 13.5 146 1-163 1-162 (1204)
143 1x5b_A Signal transducing adap 73.3 6.5 0.00022 28.7 5.3 92 51-145 52-145 (163)
144 3ldz_A STAM-1, signal transduc 72.6 7.9 0.00027 27.4 5.5 71 51-122 42-114 (140)
145 3l3f_X Protein DOA1, DOA1/UFD3 71.8 18 0.00062 30.0 8.2 100 62-164 210-327 (362)
146 3qml_C Protein SLS1, nucleotid 70.2 42 0.0014 27.2 12.3 107 10-121 73-188 (315)
147 3pst_A Protein DOA1; protein d 67.9 26 0.00091 29.7 8.5 101 62-165 273-391 (425)
148 3rru_A TOM1L1 protein; structu 66.9 16 0.00055 26.2 6.1 76 4-80 49-130 (152)
149 3zyq_A Hepatocyte growth facto 66.0 9.7 0.00033 29.3 5.1 72 51-122 45-118 (226)
150 3gjx_A Exportin-1; transport, 65.9 65 0.0022 30.9 11.7 152 8-166 473-647 (1073)
151 1mhq_A ADP-ribosylation factor 63.6 27 0.00094 24.8 6.8 71 92-163 38-116 (148)
152 1juq_A ADP-ribosylation factor 63.1 13 0.00044 27.3 5.1 72 51-122 50-128 (171)
153 3o2t_A Symplekin; heat repeat, 63.1 66 0.0023 26.9 16.1 176 23-209 40-261 (386)
154 3o2t_A Symplekin; heat repeat, 61.4 34 0.0011 28.7 7.9 150 6-164 61-257 (386)
155 3g2s_A C-terminal fragment of 59.9 22 0.00076 25.4 5.8 72 51-122 48-126 (149)
156 1dvp_A HRS, hepatocyte growth 59.8 17 0.00056 27.8 5.4 72 51-122 42-115 (220)
157 4atg_A TAF6; transcription, TF 59.7 33 0.0011 25.8 6.9 129 52-186 41-179 (196)
158 3vld_A DNA mismatch repair pro 57.1 90 0.0031 27.0 9.8 129 64-203 92-223 (500)
159 3gae_A Protein DOA1; UFD3, CDC 51.0 16 0.00054 28.7 4.0 103 19-125 101-220 (253)
160 3l9t_A Putative uncharacterize 46.1 1E+02 0.0035 23.9 14.0 145 52-216 72-219 (240)
161 1elk_A Target of MYB1; superhe 32.7 1.1E+02 0.0039 21.7 5.9 70 92-162 53-129 (157)
162 3vld_A DNA mismatch repair pro 30.4 2.7E+02 0.0091 24.1 14.6 138 66-216 51-196 (500)
163 1wjt_A Transcription elongatio 30.0 67 0.0023 21.3 3.9 68 3-76 11-80 (103)
164 3pst_A Protein DOA1; protein d 26.3 2.9E+02 0.0098 23.4 8.0 102 19-124 273-391 (425)
165 1x9f_B Erythrocruorin, globin 26.1 1.2E+02 0.0039 21.0 4.9 48 1-49 4-51 (145)
166 3fga_B Serine/threonine-protei 25.0 1.5E+02 0.005 25.0 6.0 41 7-47 128-168 (403)
167 4atg_A TAF6; transcription, TF 23.9 2.3E+02 0.0077 21.1 7.8 112 93-204 41-161 (196)
168 3l3f_X Protein DOA1, DOA1/UFD3 20.9 1.9E+02 0.0066 23.8 5.9 102 19-124 210-328 (362)
No 1
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=100.00 E-value=6.8e-33 Score=234.70 Aligned_cols=225 Identities=18% Similarity=0.157 Sum_probs=198.2
Q ss_pred HhHHHHHHHHhcC-----------CCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHH
Q 044293 7 RETINNCVSRSQS-----------DSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSIL 75 (236)
Q Consensus 7 ~~~i~~lv~~L~~-----------~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L 75 (236)
.++++.|+.+|.. .+++.|+.|+++|.+++.+++.++..+....|+||.|+.+|+++++++++.|+++|
T Consensus 72 ~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL 151 (354)
T 3nmw_A 72 LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVL 151 (354)
T ss_dssp TTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHH
Confidence 3688999999952 24678999999999999988888988865425699999999999999999999999
Q ss_pred HhhCCC--CchhHHhhhcccHHHHHHHHh-ccCCHHHHHHHHHHHHHhcc-cchhhhhhc-ccCcHHHHHHhhcCCCc--
Q 044293 76 LNLSLN--PDLKQSLASMETIYRLNWIIQ-SSSSQETVKLASSLICSLAM-LDKNKARFG-VAGTVQVLVKAVSAPSN-- 148 (236)
Q Consensus 76 ~~l~~~--~~~~~~i~~~g~i~~L~~lL~-~~~~~~~~~~a~~~L~~Ls~-~~~~~~~i~-~~g~i~~Lv~lL~~~~~-- 148 (236)
.||+.. +++|..+.+.|+||+|+++|. ++ +.++++.|+++|+||+. ++++|..+. ..|++|.|+++|.++++
T Consensus 152 ~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~-~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~ 230 (354)
T 3nmw_A 152 RNLSWRADVNSKKTLREVGSVKALMECALEVK-KESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTN 230 (354)
T ss_dssp HHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSS
T ss_pred HHHhccCCHHHHHHHHHCCCHHHHHHHHhcCC-CHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcc
Confidence 999985 467999999999999999864 45 78999999999999998 668899998 69999999999998765
Q ss_pred --HHHHHHHHHHHHHhc----CCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHc-CChhhHHHHHhcCCcHH
Q 044293 149 --PAGHHLLSSLAELVQ----FHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLA-RFDEGMIALTKTDQIVS 221 (236)
Q Consensus 149 --~~~~~a~~aL~~L~~----~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~-~~~~~~~~i~~~g~~i~ 221 (236)
.+++.|+++|+||+. .+++++.+++.|++|.|+++|.+++ ..+++.|+++|.|++ .+++++..+++.|+ ++
T Consensus 231 ~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~-i~ 308 (354)
T 3nmw_A 231 TLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHS-LTIVSNACGTLWNLSARNPKDQEALWDMGA-VS 308 (354)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTSSCHHHHHHHHHTTH-HH
T ss_pred cHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCC-hHHHHHHHHHHHHHhCCCHHHHHHHHHCCC-HH
Confidence 488999999999996 7788989999999999999999875 679999999999999 57899999999997 89
Q ss_pred HHHHHhhCCcccc
Q 044293 222 LMVDVLKGRSMFS 234 (236)
Q Consensus 222 ~lv~~l~~~~~~~ 234 (236)
.|+++++++++..
T Consensus 309 ~Lv~LL~s~~~~i 321 (354)
T 3nmw_A 309 MLKNLIHSKHKMI 321 (354)
T ss_dssp HHHTTTTCSSHHH
T ss_pred HHHHHHhCCCHHH
Confidence 9999999877543
No 2
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.98 E-value=1.6e-31 Score=232.82 Aligned_cols=225 Identities=18% Similarity=0.160 Sum_probs=197.4
Q ss_pred HhHHHHHHHHhcC-----------CCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHH
Q 044293 7 RETINNCVSRSQS-----------DSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSIL 75 (236)
Q Consensus 7 ~~~i~~lv~~L~~-----------~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L 75 (236)
.++++.|+.+|.. .+++.++.|+++|.+++.+++.++..+....|+||.|+.+|+++++++++.|+++|
T Consensus 188 ~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL 267 (458)
T 3nmz_A 188 LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVL 267 (458)
T ss_dssp TTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3678899999942 24668999999999999988878888865426699999999999999999999999
Q ss_pred HhhCCC--CchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcc-cchhhhhhc-ccCcHHHHHHhhcCCCc---
Q 044293 76 LNLSLN--PDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAM-LDKNKARFG-VAGTVQVLVKAVSAPSN--- 148 (236)
Q Consensus 76 ~~l~~~--~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~-~~~~~~~i~-~~g~i~~Lv~lL~~~~~--- 148 (236)
.||+.. +++|..|++.|+|++|+++|.++.+.++++.|+.+|+||+. +++++..+. ..|++|.|+++|.++++
T Consensus 268 ~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~ 347 (458)
T 3nmz_A 268 RNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNT 347 (458)
T ss_dssp HHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSST
T ss_pred HHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcch
Confidence 999985 46799999999999999986543378999999999999999 778999998 69999999999998765
Q ss_pred -HHHHHHHHHHHHHhc----CCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHc-CChhhHHHHHhcCCcHHH
Q 044293 149 -PAGHHLLSSLAELVQ----FHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLA-RFDEGMIALTKTDQIVSL 222 (236)
Q Consensus 149 -~~~~~a~~aL~~L~~----~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~-~~~~~~~~i~~~g~~i~~ 222 (236)
.+++.|+++|+||+. ++++++.+++.|++|.|+.+|.+++ ..+++.|+++|.|++ .+++++..+++.|+ ++.
T Consensus 348 ~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~-~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~-I~~ 425 (458)
T 3nmz_A 348 LAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHS-LTIVSNACGTLWNLSARNPKDQEALWDMGA-VSM 425 (458)
T ss_dssp THHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSC-HHHHHHHHHHHHHHHSSCHHHHHHHHHHTH-HHH
T ss_pred HHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCC-hHHHHHHHHHHHHHHcCCHHHHHHHHHCCC-HHH
Confidence 388999999999995 6788889999999999999999875 679999999999999 57899999999997 899
Q ss_pred HHHHhhCCccc
Q 044293 223 MVDVLKGRSMF 233 (236)
Q Consensus 223 lv~~l~~~~~~ 233 (236)
|+++++.+++.
T Consensus 426 Lv~LL~s~~~~ 436 (458)
T 3nmz_A 426 LKNLIHSKHKM 436 (458)
T ss_dssp HHTTTTCSSHH
T ss_pred HHHHHhCCCHH
Confidence 99999887654
No 3
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.97 E-value=4.2e-30 Score=206.54 Aligned_cols=222 Identities=19% Similarity=0.227 Sum_probs=203.9
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCC-CchhH
Q 044293 8 ETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLN-PDLKQ 86 (236)
Q Consensus 8 ~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~ 86 (236)
+.|+.|+++|++++++++..|+++|.+++..+++++..+.+. |+++.|+.+|++++++++..++++|.+++.+ ++++.
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDA-GGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHT-THHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHC-CCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence 468999999999999999999999999999988899999998 9999999999999999999999999999998 67799
Q ss_pred HhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhc-ccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCC
Q 044293 87 SLASMETIYRLNWIIQSSSSQETVKLASSLICSLA-MLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFH 165 (236)
Q Consensus 87 ~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~ 165 (236)
.+.+.|+++.|+.+|+++ +++++..|+++|.+++ ..++++..+.+.|+++.|++++.++++.++..++++|++++...
T Consensus 81 ~~~~~~~i~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~ 159 (252)
T 4hxt_A 81 AIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP 159 (252)
T ss_dssp HHHHTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999999999988 8999999999999999 56788888999999999999999999999999999999999855
Q ss_pred -CChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC-ChhhHHHHHhcCCcHHHHHHHhhCCccc
Q 044293 166 -GNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR-FDEGMIALTKTDQIVSLMVDVLKGRSMF 233 (236)
Q Consensus 166 -~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~~i~~lv~~l~~~~~~ 233 (236)
..+..+.+.|++|.|++++.+++ +.++..|+.+|.+++. +++.+..+.+.|+ ++.|+++++++++.
T Consensus 160 ~~~~~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~-i~~L~~ll~~~~~~ 227 (252)
T 4hxt_A 160 DEAIKAIVDAGGVEVLVKLLTSTD-SEVQKEAARALANIASGPTSAIKAIVDAGG-VEVLQKLLTSTDSE 227 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSBHHHHHHHHHTTH-HHHHHHGGGCSCHH
T ss_pred HHHHHHHHHCcCHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHCCC-HHHHHHHHCCCcHH
Confidence 45577889999999999999874 7899999999999997 6788888999886 89999999887653
No 4
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.97 E-value=5.4e-31 Score=209.87 Aligned_cols=200 Identities=19% Similarity=0.184 Sum_probs=176.2
Q ss_pred HHHhHHHHHHHHhcCCCH--HHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCC-
Q 044293 5 RVRETINNCVSRSQSDSY--EDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLN- 81 (236)
Q Consensus 5 ~~~~~i~~lv~~L~~~~~--~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~- 81 (236)
++.-+||.+|++|+++++ +++..|++.|++++..+++++..+.+. |+||.||++|+++++++|+.|+++|.||+.+
T Consensus 5 ~~~~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~-G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~ 83 (233)
T 3tt9_A 5 DMEMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQL-RGILKLLQLLKVQNEDVQRAVCGALRNLVFED 83 (233)
T ss_dssp CCCCCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHT-THHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred chhccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHc-CCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC
Confidence 345679999999998887 889999999999999889999999998 9999999999999999999999999999984
Q ss_pred CchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhc---C-------------
Q 044293 82 PDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVS---A------------- 145 (236)
Q Consensus 82 ~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~---~------------- 145 (236)
+++|..|.+.|+||+|+++|+++.+.+++++|+++|++|+..+.+|..|.+ +++|+|++++. +
T Consensus 84 ~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~ 162 (233)
T 3tt9_A 84 NDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGL 162 (233)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTT
T ss_pred HHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHh-ccHHHHHHHHhccccCCccccccccccc
Confidence 689999999999999999998532899999999999999999999999987 57999998763 1
Q ss_pred CCcHHHHHHHHHHHHHhcC-CCChHHHHHh-CcHHHHHHHhcCC-----ChhhHHHHHHHHHHHHcCC
Q 044293 146 PSNPAGHHLLSSLAELVQF-HGNSTLAVRA-GAVSELIHLIGST-----EAEDLAGTSLAVLNLLARF 206 (236)
Q Consensus 146 ~~~~~~~~a~~aL~~L~~~-~~~~~~~~~~-g~i~~lv~ll~~~-----~~~~~~~~a~~~L~~l~~~ 206 (236)
.+..++++|..+|+||+.. +++|+.+.+. |+|+.|+.+++.+ .+...+|+|+++|.||+..
T Consensus 163 ~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 163 LDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp CCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred chHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 1457899999999999985 5899999985 7799999999862 1246789999999999964
No 5
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.97 E-value=1.1e-30 Score=228.66 Aligned_cols=175 Identities=17% Similarity=0.151 Sum_probs=159.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCC-CchhHH
Q 044293 9 TINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLN-PDLKQS 87 (236)
Q Consensus 9 ~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~ 87 (236)
+||.+|.+|+++++++|..|+++|++++.+++.++..+.+. |+||.|+.+|++++++++..|+++|.||+.+ +++|..
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~-g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~ 81 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQL-GGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHT-THHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHc-CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 68999999999999999999999999998887888899998 9999999999999999999999999999997 788999
Q ss_pred hhhcccHHHHHHHHh-ccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhh--------cCC--------CcHH
Q 044293 88 LASMETIYRLNWIIQ-SSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAV--------SAP--------SNPA 150 (236)
Q Consensus 88 i~~~g~i~~L~~lL~-~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL--------~~~--------~~~~ 150 (236)
+++.|+||+|+++|+ ++ ++++++.|+++|+||+.++++|..+.+ |++|+|+++| .++ +..+
T Consensus 82 i~~~G~i~~Lv~lL~~~~-~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v 159 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRTG-NAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEV 159 (457)
T ss_dssp HHHTTCHHHHHHHHTTCC-CHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred HHHcCCHHHHHHHHhhCC-CHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHH
Confidence 999999999999999 66 899999999999999999999999999 9999999999 332 2345
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHh-CcHHHHHHHhcC
Q 044293 151 GHHLLSSLAELVQFHGNSTLAVRA-GAVSELIHLIGS 186 (236)
Q Consensus 151 ~~~a~~aL~~L~~~~~~~~~~~~~-g~i~~lv~ll~~ 186 (236)
.+.|+++|+|||.+++++..+++. |++|.|+.+|.+
T Consensus 160 ~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~ 196 (457)
T 1xm9_A 160 FFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQN 196 (457)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHh
Confidence 669999999999998888999987 999999988863
No 6
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.97 E-value=6.2e-30 Score=206.31 Aligned_cols=223 Identities=17% Similarity=0.198 Sum_probs=201.9
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCC-CCchh
Q 044293 7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSL-NPDLK 85 (236)
Q Consensus 7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~~~~~ 85 (236)
.+..+.++.+|++++++++..|++.|+++...++.++..+.+. |++|.|+.+|++++++++..|+++|.+++. +++++
T Consensus 11 ~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~-g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (252)
T 4db8_A 11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDA-GALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (252)
T ss_dssp TCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHT-THHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHc-CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 4567899999999999999999999977665567788899998 999999999999999999999999999998 46779
Q ss_pred HHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhh-hhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcC
Q 044293 86 QSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNK-ARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQF 164 (236)
Q Consensus 86 ~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~ 164 (236)
..+.+.|+++.|+.+|+++ +++++..|+++|.+++..+.++ ..+.+.|+++.|+++|.++++.++..++++|.+|+.+
T Consensus 90 ~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 168 (252)
T 4db8_A 90 QAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 168 (252)
T ss_dssp HHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 9999999999999999998 8999999999999999999888 8888899999999999999999999999999999985
Q ss_pred C-CChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC-ChhhHHHHHhcCCcHHHHHHHhhCCccc
Q 044293 165 H-GNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR-FDEGMIALTKTDQIVSLMVDVLKGRSMF 233 (236)
Q Consensus 165 ~-~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~~i~~lv~~l~~~~~~ 233 (236)
. +++..+.+.|++|.|++++.+++ +.+++.|+.+|.+++. +++.+..+.+.|+ ++.|+++++++++.
T Consensus 169 ~~~~~~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~-i~~L~~ll~~~~~~ 237 (252)
T 4db8_A 169 GNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQKQAVKEAGA-LEKLEQLQSHENEK 237 (252)
T ss_dssp CHHHHHHHHHTTCHHHHHHGGGCSS-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTH-HHHHHTTTTCSSSH
T ss_pred ChHHHHHHHHCCCHHHHHHHHCCCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHCCc-HHHHHHHhCCCCHH
Confidence 4 56677888999999999999874 7899999999999994 6788889999886 89999999987764
No 7
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.97 E-value=6.2e-29 Score=217.64 Aligned_cols=221 Identities=16% Similarity=0.151 Sum_probs=190.8
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhcc-CCChHHHHHHHHHHHhhCCCCchh
Q 044293 7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSK-SSSPIIRTLSLSILLNLSLNPDLK 85 (236)
Q Consensus 7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~~~~ 85 (236)
.+.||.|+++|++++++++..|+++|++++..+++++..+.+. |+||.|+.+|+ ++++++++.++++|+||+.++++|
T Consensus 43 ~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~-G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~ 121 (457)
T 1xm9_A 43 LGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQ-NGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELK 121 (457)
T ss_dssp TTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHT-TCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTH
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHc-CCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhH
Confidence 4689999999999999999999999999999889999999998 99999999999 889999999999999999999999
Q ss_pred HHhhhcccHHHHHHHHh--------cc-------CCHHHHHHHHHHHHHhcccchhhhhhccc-CcHHHHHHhhcC----
Q 044293 86 QSLASMETIYRLNWIIQ--------SS-------SSQETVKLASSLICSLAMLDKNKARFGVA-GTVQVLVKAVSA---- 145 (236)
Q Consensus 86 ~~i~~~g~i~~L~~lL~--------~~-------~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~-g~i~~Lv~lL~~---- 145 (236)
..+++ |++|+|+++|. ++ .+++++++|+++|+||+.+++++..+.+. |++++|+.+|++
T Consensus 122 ~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~ 200 (457)
T 1xm9_A 122 EELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAA 200 (457)
T ss_dssp HHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHH
T ss_pred HHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccc
Confidence 99999 99999999993 22 14567779999999999998899999987 999999988863
Q ss_pred --C-----------------------------------------------------------------------------
Q 044293 146 --P----------------------------------------------------------------------------- 146 (236)
Q Consensus 146 --~----------------------------------------------------------------------------- 146 (236)
.
T Consensus 201 ~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 280 (457)
T 1xm9_A 201 SRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLY 280 (457)
T ss_dssp TCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGG
T ss_pred cCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHh
Confidence 1
Q ss_pred ----------------CcHHHHHHHHHHHHHhcCCCCh-----HHHH-HhCcHHHHHHHhcCCChhhHHHHHHHHHHHHc
Q 044293 147 ----------------SNPAGHHLLSSLAELVQFHGNS-----TLAV-RAGAVSELIHLIGSTEAEDLAGTSLAVLNLLA 204 (236)
Q Consensus 147 ----------------~~~~~~~a~~aL~~L~~~~~~~-----~~~~-~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~ 204 (236)
++.+++.|+++|+|+|...... +.++ +.|++|.|+++|.+++ .+++..|+++|.|++
T Consensus 281 ~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~-~~v~~~A~~aL~nls 359 (457)
T 1xm9_A 281 HSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGN-SDVVRSGASLLSNMS 359 (457)
T ss_dssp SHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSC-HHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCC-HhHHHHHHHHHHHHh
Confidence 1234556789999999865432 2233 5899999999999985 789999999999999
Q ss_pred CChhhHHHHHhcCCcHHHHHHHhhCCcc
Q 044293 205 RFDEGMIALTKTDQIVSLMVDVLKGRSM 232 (236)
Q Consensus 205 ~~~~~~~~i~~~g~~i~~lv~~l~~~~~ 232 (236)
.+++++..+.. |+ +++|+++|..+++
T Consensus 360 ~~~~~~~~i~~-~~-i~~Lv~lL~~~~~ 385 (457)
T 1xm9_A 360 RHPLLHRVMGN-QV-FPEVTRLLTSHTG 385 (457)
T ss_dssp TSGGGHHHHHH-HT-HHHHHHTTTSCCS
T ss_pred cCHHHHHHHHH-hh-hHHHHHhccCCCC
Confidence 99998887765 66 8999999998755
No 8
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=2.6e-29 Score=212.75 Aligned_cols=199 Identities=18% Similarity=0.138 Sum_probs=180.1
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-ChHHHHHHHhccCcHHHHHhh-ccCCChHHHHHHHHHHHhhCC-CCch
Q 044293 8 ETINNCVSRSQSDSYEDQQKALQTLASITRV-SPQYRSLLAQTDGAISTLLGL-SKSSSPIIRTLSLSILLNLSL-NPDL 84 (236)
Q Consensus 8 ~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~~g~i~~Lv~l-L~~~~~~~~~~a~~~L~~l~~-~~~~ 84 (236)
+.||.|+++|+++++++++.|+++|++++.. ++++|..+.+. |+||.|+.+ ++++++++++.++.+|+||+. ++++
T Consensus 127 GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~-G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~n 205 (354)
T 3nmw_A 127 GCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREV-GSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN 205 (354)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHT-THHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred CcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHC-CCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhh
Confidence 4599999999999999999999999999985 67899999998 999999997 567788999999999999999 5578
Q ss_pred hHHhh-hcccHHHHHHHHhccCCH---HHHHHHHHHHHHhcc----cchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHH
Q 044293 85 KQSLA-SMETIYRLNWIIQSSSSQ---ETVKLASSLICSLAM----LDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLS 156 (236)
Q Consensus 85 ~~~i~-~~g~i~~L~~lL~~~~~~---~~~~~a~~~L~~Ls~----~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~ 156 (236)
|..+. ..|+|++|+++|+++.+. ++++.|+++|+||+. +++++..+.+.|++|+|+++|++++..+++.|++
T Consensus 206 k~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~ 285 (354)
T 3nmw_A 206 KADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACG 285 (354)
T ss_dssp HHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHH
T ss_pred hHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHH
Confidence 88888 799999999999976322 689999999999995 7889999999999999999999999999999999
Q ss_pred HHHHHhc-CCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChh
Q 044293 157 SLAELVQ-FHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDE 208 (236)
Q Consensus 157 aL~~L~~-~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~ 208 (236)
+|+||+. +++++..+++.|++|+|+++|.+++ ..+++.|+.+|.||+.+..
T Consensus 286 aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~-~~i~~~A~~aL~nL~~~~~ 337 (354)
T 3nmw_A 286 TLWNLSARNPKDQEALWDMGAVSMLKNLIHSKH-KMIAMGSAAALRNLMANRP 337 (354)
T ss_dssp HHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSS-HHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHcCCH
Confidence 9999995 6788999999999999999999874 7889999999999997643
No 9
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.97 E-value=2.7e-29 Score=223.64 Aligned_cols=198 Identities=13% Similarity=0.134 Sum_probs=176.5
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCC--Cch
Q 044293 7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLN--PDL 84 (236)
Q Consensus 7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~--~~~ 84 (236)
.+.|+.||.+|+++++++|..|+++|++++..++++|..+.+. |+||.||.+|+++++++++.|+++|.||+.+ +++
T Consensus 47 ~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~-G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~n 125 (584)
T 3l6x_A 47 QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKL-KGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDN 125 (584)
T ss_dssp CCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT-THHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHH
T ss_pred cccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHc-CCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHH
Confidence 4579999999999999999999999999999889999999998 9999999999999999999999999999985 789
Q ss_pred hHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhc------------------CC
Q 044293 85 KQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVS------------------AP 146 (236)
Q Consensus 85 ~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~------------------~~ 146 (236)
|..|++.|+|++|+++|+++.+.+++++|+++|++|+.++++|..|.+ +++|+|++++. ..
T Consensus 126 k~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~ 204 (584)
T 3l6x_A 126 KIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIE 204 (584)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCC
T ss_pred HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhcccccccccccccccccccc
Confidence 999999999999999999854789999999999999999999999995 67999999872 12
Q ss_pred CcHHHHHHHHHHHHHhcCCC-ChHHHHHh-CcHHHHHHHhcCC-----ChhhHHHHHHHHHHHHcCC
Q 044293 147 SNPAGHHLLSSLAELVQFHG-NSTLAVRA-GAVSELIHLIGST-----EAEDLAGTSLAVLNLLARF 206 (236)
Q Consensus 147 ~~~~~~~a~~aL~~L~~~~~-~~~~~~~~-g~i~~lv~ll~~~-----~~~~~~~~a~~~L~~l~~~ 206 (236)
+..++++|+++|+||+...+ +|+.+++. |+++.|+.+++.. .+...+++|+++|.||+..
T Consensus 205 d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~ 271 (584)
T 3l6x_A 205 WESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQ 271 (584)
T ss_dssp CHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhcc
Confidence 45788999999999999764 58888884 6678999999742 2346889999999999976
No 10
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.96 E-value=3.5e-28 Score=190.98 Aligned_cols=199 Identities=19% Similarity=0.202 Sum_probs=179.5
Q ss_pred HHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCC-Cc
Q 044293 5 RVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLN-PD 83 (236)
Q Consensus 5 ~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-~~ 83 (236)
+..+..+.|+.+|++++++++..|+++|.+++..+++++..+.+. |+++.|+.+|++++++++..|+++|.+++.+ ++
T Consensus 9 ~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~-g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 87 (210)
T 4db6_A 9 HHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDA-GALPALVQLLSSPNEQILQEALWALSNIASGGNE 87 (210)
T ss_dssp ----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHT-THHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred cccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc-CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcH
Confidence 446788999999999999999999999999998888999999998 9999999999999999999999999999965 56
Q ss_pred hhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccc-hhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHh
Q 044293 84 LKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLD-KNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELV 162 (236)
Q Consensus 84 ~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~ 162 (236)
++..+.+.|+++.|+++|+++ ++.++..|+++|.+++... +.+..+.+.|+++.|++++.++++.++..|+++|.+++
T Consensus 88 ~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 166 (210)
T 4db6_A 88 QIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 166 (210)
T ss_dssp HHHHHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCC-cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 788899999999999999999 8999999999999999654 55677788999999999999999999999999999999
Q ss_pred cC-CCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCC
Q 044293 163 QF-HGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARF 206 (236)
Q Consensus 163 ~~-~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~ 206 (236)
.+ ++++..+.+.|+++.|++++.+++ +.+++.|+.+|.+|+.+
T Consensus 167 ~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~v~~~a~~aL~~l~~~ 210 (210)
T 4db6_A 167 SGGNEQKQAVKEAGALEKLEQLQSHEN-EKIQKEAQEALEKLQSH 210 (210)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHCC-
T ss_pred cCCcHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHhcC
Confidence 87 677888899999999999999874 78999999999999863
No 11
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.96 E-value=2.3e-28 Score=212.94 Aligned_cols=199 Identities=18% Similarity=0.143 Sum_probs=179.9
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-ChHHHHHHHhccCcHHHHHhh-ccCCChHHHHHHHHHHHhhCC-CCc
Q 044293 7 RETINNCVSRSQSDSYEDQQKALQTLASITRV-SPQYRSLLAQTDGAISTLLGL-SKSSSPIIRTLSLSILLNLSL-NPD 83 (236)
Q Consensus 7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~~g~i~~Lv~l-L~~~~~~~~~~a~~~L~~l~~-~~~ 83 (236)
.+.||.|+.+|++++++++..|+++|++++.. ++++|..+.+. |+||.|+.+ ++++++.+++.++.+|+||+. +++
T Consensus 242 ~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~-GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~ 320 (458)
T 3nmz_A 242 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREV-GSVKALMECALEVKKESTLKSVLSALWNLSAHCTE 320 (458)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHT-THHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHH
T ss_pred CCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHc-CCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHH
Confidence 34599999999999999999999999999985 67899999998 999999997 566788999999999999999 668
Q ss_pred hhHHhh-hcccHHHHHHHHhccCCH---HHHHHHHHHHHHhcc----cchhhhhhcccCcHHHHHHhhcCCCcHHHHHHH
Q 044293 84 LKQSLA-SMETIYRLNWIIQSSSSQ---ETVKLASSLICSLAM----LDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLL 155 (236)
Q Consensus 84 ~~~~i~-~~g~i~~L~~lL~~~~~~---~~~~~a~~~L~~Ls~----~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~ 155 (236)
+|..|. ..|+|++|+.+|.++.+. ++++.|+++|+||+. +++++..+.+.|++|+|+.+|.+++..+++.|+
T Consensus 321 nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~ 400 (458)
T 3nmz_A 321 NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNAC 400 (458)
T ss_dssp HHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHH
Confidence 888888 799999999999976322 589999999999995 778899999999999999999999999999999
Q ss_pred HHHHHHhc-CCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCCh
Q 044293 156 SSLAELVQ-FHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFD 207 (236)
Q Consensus 156 ~aL~~L~~-~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~ 207 (236)
++|+||+. +++++..+++.|++|+|+++|..++ ..+++.|+.+|.||+.+.
T Consensus 401 ~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~-~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 401 GTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKH-KMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSS-HHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHcCC
Confidence 99999995 6788999999999999999998874 788999999999999754
No 12
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.96 E-value=4.9e-28 Score=215.55 Aligned_cols=224 Identities=14% Similarity=0.107 Sum_probs=187.0
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-ChHHHHHHHhccCcHHHHHhhccC-CChHHHHHHHHHHHhhCCCCch
Q 044293 7 RETINNCVSRSQSDSYEDQQKALQTLASITRV-SPQYRSLLAQTDGAISTLLGLSKS-SSPIIRTLSLSILLNLSLNPDL 84 (236)
Q Consensus 7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~ 84 (236)
.+.||.||++|+++++++|+.|+++|++++.. ++++|..+.+. |+||.|+.+|++ .+.++++.++.+|++|+.++++
T Consensus 89 ~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~-GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~ 167 (584)
T 3l6x_A 89 LKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNC-DGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSI 167 (584)
T ss_dssp TTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHT-THHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGG
T ss_pred cCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHc-CCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchh
Confidence 46899999999999999999999999999985 68999999998 999999999987 5788999999999999999999
Q ss_pred hHHhhhcccHHHHHHHHh-----------------ccCCHHHHHHHHHHHHHhcccc-hhhhhhcc-cCcHHHHHHhhcC
Q 044293 85 KQSLASMETIYRLNWIIQ-----------------SSSSQETVKLASSLICSLAMLD-KNKARFGV-AGTVQVLVKAVSA 145 (236)
Q Consensus 85 ~~~i~~~g~i~~L~~lL~-----------------~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~-~g~i~~Lv~lL~~ 145 (236)
|..|++ ++|++|++++. +..+++++++|+++|+||+.+. +++..+.+ .|+++.|+.++++
T Consensus 168 k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~ 246 (584)
T 3l6x_A 168 KMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQA 246 (584)
T ss_dssp HHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHH
T ss_pred hHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHH
Confidence 999985 57999999872 1115799999999999999877 45888887 6778899999974
Q ss_pred ------CCcHHHHHHHHHHHHHhcCC--------------------------CChHHHHHhCcHHHHHHHhcCCChhhHH
Q 044293 146 ------PSNPAGHHLLSSLAELVQFH--------------------------GNSTLAVRAGAVSELIHLIGSTEAEDLA 193 (236)
Q Consensus 146 ------~~~~~~~~a~~aL~~L~~~~--------------------------~~~~~~~~~g~i~~lv~ll~~~~~~~~~ 193 (236)
.+...+++|+++|+|||... .+...+++.++++.++.+|..+..+.++
T Consensus 247 ~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~ 326 (584)
T 3l6x_A 247 EIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAIL 326 (584)
T ss_dssp HHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHH
T ss_pred hhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHH
Confidence 45678999999999999641 1122234456788899999765457899
Q ss_pred HHHHHHHHHHcCCh-----hhHHHHHhcCCcHHHHHHHhhCCccc
Q 044293 194 GTSLAVLNLLARFD-----EGMIALTKTDQIVSLMVDVLKGRSMF 233 (236)
Q Consensus 194 ~~a~~~L~~l~~~~-----~~~~~i~~~g~~i~~lv~~l~~~~~~ 233 (236)
+.|+++|.||+.+. ..+..+.+++| +|.|+++|+.++..
T Consensus 327 E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~g-lp~Lv~LL~s~~~~ 370 (584)
T 3l6x_A 327 EASAGAIQNLCAGRWTYGRYIRSALRQEKA-LSAIADLLTNEHER 370 (584)
T ss_dssp HHHHHHHHHHHSSCSHHHHHHHHHHTSHHH-HHHHHHGGGCSCHH
T ss_pred HHHHHHHHHHHcCCccccHHHHHHHHHcCc-HHHHHHHHcCCCHH
Confidence 99999999998652 34566777787 89999999987753
No 13
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.95 E-value=1.1e-27 Score=219.76 Aligned_cols=225 Identities=15% Similarity=0.132 Sum_probs=193.6
Q ss_pred HHHhHHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCC
Q 044293 5 RVRETINNCVSRSQSD--SYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNP 82 (236)
Q Consensus 5 ~~~~~i~~lv~~L~~~--~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~ 82 (236)
.+.+.++.|+++|.++ +++++..|++.|.+++.+ ++.|+.++...|++|.|+.+|+++++.++..++++|.|++.+.
T Consensus 374 ~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~-~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~ 452 (810)
T 3now_A 374 AALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLD-AECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAY 452 (810)
T ss_dssp HHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS-HHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCS
T ss_pred cHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC-cHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCc
Confidence 4567789999999877 889999999999999987 6777777754499999999999999999999999999999854
Q ss_pred c------------------------------hh---HHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhh
Q 044293 83 D------------------------------LK---QSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKAR 129 (236)
Q Consensus 83 ~------------------------------~~---~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~ 129 (236)
+ ++ +.+++.|++|+|+.+|+++ ++++++.|+|+|.|++.+++++..
T Consensus 453 d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~-s~~vqe~Aa~aL~NLA~d~~~r~~ 531 (810)
T 3now_A 453 EKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTE-SHNSQELIARVLNAVCGLKELRGK 531 (810)
T ss_dssp CCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCC-CHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred hhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCHHHHHH
Confidence 2 12 5677899999999999998 899999999999999999999999
Q ss_pred hcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCCChHHH---HHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCC
Q 044293 130 FGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLA---VRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARF 206 (236)
Q Consensus 130 i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~---~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~ 206 (236)
+.+.|++|+|+.+|.++++..++.|+++|.+|+.+......+ ...|++|+|+++|..++.......|+.+|.||+.+
T Consensus 532 Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~ 611 (810)
T 3now_A 532 VVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASM 611 (810)
T ss_dssp HHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTS
T ss_pred HHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999865433322 12479999999998653333446899999999986
Q ss_pred -hhhHHHHHhcCCcHHHHHHHhhCCcc
Q 044293 207 -DEGMIALTKTDQIVSLMVDVLKGRSM 232 (236)
Q Consensus 207 -~~~~~~i~~~g~~i~~lv~~l~~~~~ 232 (236)
++.+..+++.|| ++.|+.++.++++
T Consensus 612 ~d~~~~~Ii~aG~-l~~Lv~LL~s~~~ 637 (810)
T 3now_A 612 NESVRQRIIKEQG-VSKIEYYLMEDHL 637 (810)
T ss_dssp CHHHHHHHHHTTH-HHHHHHHHHSCCT
T ss_pred CHHHHHHHHHcCC-HHHHHHHHcCCCH
Confidence 588999999998 8999999987665
No 14
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.95 E-value=4.5e-27 Score=189.47 Aligned_cols=197 Identities=19% Similarity=0.183 Sum_probs=180.6
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchh-
Q 044293 7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLK- 85 (236)
Q Consensus 7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~- 85 (236)
.+.|+.|+++|++++++++..|+++|.+++.++++++..+.+. |+++.|+.+|+++++++++.|+++|.+++.+++++
T Consensus 53 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~-g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 131 (252)
T 4db8_A 53 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA-GALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131 (252)
T ss_dssp TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT-THHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHc-CCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHH
Confidence 3688999999999999999999999999999889999999998 99999999999999999999999999999999987
Q ss_pred HHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccc-hhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcC
Q 044293 86 QSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLD-KNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQF 164 (236)
Q Consensus 86 ~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~ 164 (236)
..+.+.|+++.|+++|+++ +++++..|+++|.+++..+ +++..+.+.|+++.|++++.++++.++..|+++|.+++..
T Consensus 132 ~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 210 (252)
T 4db8_A 132 QAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 210 (252)
T ss_dssp HHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTS
T ss_pred HHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcC
Confidence 8888999999999999988 8999999999999999854 6677777899999999999999999999999999999964
Q ss_pred -CCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCC
Q 044293 165 -HGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARF 206 (236)
Q Consensus 165 -~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~ 206 (236)
++++..+.+.|+++.+++++.+++ +++++.|+.+|.||+.+
T Consensus 211 ~~~~~~~~~~~g~i~~L~~ll~~~~-~~v~~~A~~~L~~l~~~ 252 (252)
T 4db8_A 211 GNEQKQAVKEAGALEKLEQLQSHEN-EKIQKEAQEALEKLQSH 252 (252)
T ss_dssp CHHHHHHHHHTTHHHHHHTTTTCSS-SHHHHTHHHHHHTTC--
T ss_pred CHHHHHHHHHCCcHHHHHHHhCCCC-HHHHHHHHHHHHHHhcC
Confidence 566778889999999999999874 78999999999999853
No 15
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.95 E-value=5.2e-27 Score=215.34 Aligned_cols=222 Identities=13% Similarity=0.108 Sum_probs=196.4
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHH
Q 044293 8 ETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQS 87 (236)
Q Consensus 8 ~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~ 87 (236)
+.||.|+.+|+++++.+|+.|+++|.+++.+ +++|..+.++ |++|+|+.+|+++++..++.|+++|.+++.+.+....
T Consensus 495 GaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~~r~~Vv~~-Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~ 572 (810)
T 3now_A 495 GITTALCALAKTESHNSQELIARVLNAVCGL-KELRGKVVQE-GGVKALLRMALEGTEKGKRHATQALARIGITINPEVS 572 (810)
T ss_dssp THHHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHT-THHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred cCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHC-CCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhh
Confidence 6899999999999999999999999999975 7799999998 9999999999999999999999999999876554433
Q ss_pred hh---hcccHHHHHHHHhccCCHHHHHHHHHHHHHhccc-chhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhc
Q 044293 88 LA---SMETIYRLNWIIQSSSSQETVKLASSLICSLAML-DKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQ 163 (236)
Q Consensus 88 i~---~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~ 163 (236)
+. ..|++|+|+.+|.++.+...+..|+++|.||+.. ++++..+.+.|+++.|+.+|.++++.+++.|+++|+||+.
T Consensus 573 ~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~ 652 (810)
T 3now_A 573 FSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVM 652 (810)
T ss_dssp TTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTT
T ss_pred hcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 32 2579999999998653445567899999999987 4788899999999999999999999999999999999999
Q ss_pred CCCChHHHHH-hCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC-ChhhHHHHHh-cCCcHHHHHHHhhCCccc
Q 044293 164 FHGNSTLAVR-AGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR-FDEGMIALTK-TDQIVSLMVDVLKGRSMF 233 (236)
Q Consensus 164 ~~~~~~~~~~-~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~-~g~~i~~lv~~l~~~~~~ 233 (236)
+++.+..+++ .|+++.|+.++...+ ..+++.|+++|.|++. +++....+++ .|+ ++.|++++++++..
T Consensus 653 ~~~~~~~~v~~~g~l~~Lv~LL~s~d-~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~-I~~Lv~LL~s~d~~ 723 (810)
T 3now_A 653 SEDVIKMFEGNNDRVKFLALLCEDED-EETATACAGALAIITSVSVKCCEKILAIASW-LDILHTLIANPSPA 723 (810)
T ss_dssp SHHHHHHHHSSSSHHHHHHHGGGCSS-HHHHHHHHHHHHHHHHHCHHHHHHHHTSTTH-HHHHHHHHTCSSHH
T ss_pred ChHHHHHHHhccCcHHHHHHHhcCCC-HHHHHHHHHHHHHHhCCCHHHHHHHHHHcCC-HHHHHHHHCCCCHH
Confidence 9988888886 799999999999874 7899999999999998 7888888888 776 89999999987643
No 16
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.95 E-value=1.5e-27 Score=190.01 Aligned_cols=178 Identities=11% Similarity=0.146 Sum_probs=159.2
Q ss_pred CcHHHHHhhccCCCh--HHHHHHHHHHHhhCC-CCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcc-cchh
Q 044293 51 GAISTLLGLSKSSSP--IIRTLSLSILLNLSL-NPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAM-LDKN 126 (236)
Q Consensus 51 g~i~~Lv~lL~~~~~--~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~-~~~~ 126 (236)
-.+|.||++|+++++ +++..|+++|.+++. ++++|..|.+.|+||+|+++|+++ ++++++.|+++|.||+. +++|
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~-~~~vq~~Aa~aL~nLa~~~~~n 86 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQ-NEDVQRAVCGALRNLVFEDNDN 86 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTCHHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHHH
Confidence 358999999999988 889999999999996 567899999999999999999998 89999999999999997 5789
Q ss_pred hhhhcccCcHHHHHHhhc-CCCcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcC---C------------Chh
Q 044293 127 KARFGVAGTVQVLVKAVS-APSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGS---T------------EAE 190 (236)
Q Consensus 127 ~~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~---~------------~~~ 190 (236)
|..|.+.|+||+|+++|+ +++..+++.++.+|++|+..+++|..+++. ++|+|++++.. + .+.
T Consensus 87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~ 165 (233)
T 3tt9_A 87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDF 165 (233)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCH
T ss_pred HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchH
Confidence 999999999999999998 578899999999999999999999998874 69999987631 0 135
Q ss_pred hHHHHHHHHHHHHcC-ChhhHHHHHhcCCcHHHHHHHhhCC
Q 044293 191 DLAGTSLAVLNLLAR-FDEGMIALTKTDQIVSLMVDVLKGR 230 (236)
Q Consensus 191 ~~~~~a~~~L~~l~~-~~~~~~~i~~~g~~i~~lv~~l~~~ 230 (236)
+++++|..+|.||+. ++++|..|++++|+|+.|+.+++.+
T Consensus 166 ~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~ 206 (233)
T 3tt9_A 166 DIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGT 206 (233)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhh
Confidence 789999999999987 6799999999988889999999864
No 17
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.95 E-value=1.4e-26 Score=205.31 Aligned_cols=223 Identities=15% Similarity=0.156 Sum_probs=194.6
Q ss_pred HhHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCC-ch
Q 044293 7 RETINNCVSRSQS-DSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNP-DL 84 (236)
Q Consensus 7 ~~~i~~lv~~L~~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~-~~ 84 (236)
.+.||.||++|++ +++++|..|+++|.+++..++++++.+++. |+||.|+.+|+++++++++.|+++|+|++.+. ..
T Consensus 99 ~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~-GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~ 177 (510)
T 3ul1_B 99 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDG-GAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 177 (510)
T ss_dssp TTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHT-THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHC-CCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 3579999999974 568899999999999999999999999998 99999999999999999999999999999985 55
Q ss_pred hHHhhhcccHHHHHHHHhccC----CHHHHHHHHHHHHHhcccchhhhhhcc-cCcHHHHHHhhcCCCcHHHHHHHHHHH
Q 044293 85 KQSLASMETIYRLNWIIQSSS----SQETVKLASSLICSLAMLDKNKARFGV-AGTVQVLVKAVSAPSNPAGHHLLSSLA 159 (236)
Q Consensus 85 ~~~i~~~g~i~~L~~lL~~~~----~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~aL~ 159 (236)
|..+.+.|++++|+.+++..+ ....+..++++|.+++........+.. .|++|.|++++.+.++.++..++++|+
T Consensus 178 r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~ 257 (510)
T 3ul1_B 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAIS 257 (510)
T ss_dssp HHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 888889999999999998652 346788999999999998766655544 789999999999999999999999999
Q ss_pred HHhcCCCChH-HHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC-ChhhHHHHHhcCCcHHHHHHHhhCCcc
Q 044293 160 ELVQFHGNST-LAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR-FDEGMIALTKTDQIVSLMVDVLKGRSM 232 (236)
Q Consensus 160 ~L~~~~~~~~-~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~~i~~lv~~l~~~~~ 232 (236)
+|+.++.++. .+.+.|++|.|+.+|.+.+ ..++..++.+|.|++. +++.+..+.+.|+ ++.|+.+++++++
T Consensus 258 ~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~al~aL~nl~~~~~~~~~~i~~~g~-l~~L~~LL~~~~~ 330 (510)
T 3ul1_B 258 YLTDGPNERIEMVVKKGVVPQLVKLLGATE-LPIVTPALRAIGNIVTGTDEQTQKVIDAGA-LAVFPSLLTNPKT 330 (510)
T ss_dssp HHTSSCHHHHHHHHTTTCHHHHHHHHTCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTG-GGGCC-CTTCSSH
T ss_pred HHhhchhhhHHHHHhcccchhhhhhhcCCC-hhhhhHHHHHHHHhhcCCHHHHHHHhhccc-hHHHHHHhcCCCH
Confidence 9998776554 5667999999999999875 7899999999999986 5677888889887 7999999987654
No 18
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.95 E-value=4.8e-26 Score=182.78 Aligned_cols=198 Identities=19% Similarity=0.191 Sum_probs=181.6
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCC-CCchhH
Q 044293 8 ETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSL-NPDLKQ 86 (236)
Q Consensus 8 ~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~~~~~~ 86 (236)
+.|+.|+++|++++++++..++++|.+++.++++++..+.+. |+++.|+.+|++++++++..++++|.+++. +++++.
T Consensus 44 g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 122 (252)
T 4hxt_A 44 GGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDA-GGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 122 (252)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT-THHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHC-CCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 689999999999999999999999999999889999999998 999999999999999999999999999994 567788
Q ss_pred HhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccc-hhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhc-C
Q 044293 87 SLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLD-KNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQ-F 164 (236)
Q Consensus 87 ~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~-~ 164 (236)
.+.+.|+++.|+++++++ +++++..++++|.+++... +.+..+.+.|+++.|+.++.++++.++..++++|.+++. +
T Consensus 123 ~~~~~~~i~~L~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 201 (252)
T 4hxt_A 123 AIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP 201 (252)
T ss_dssp HHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSB
T ss_pred HHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC
Confidence 899999999999999998 8999999999999999854 555778889999999999999999999999999999998 4
Q ss_pred CCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChh
Q 044293 165 HGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDE 208 (236)
Q Consensus 165 ~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~ 208 (236)
++.+..+.+.|+++.+++++.+++ +.+++.|+.+|.|++..+.
T Consensus 202 ~~~~~~l~~~~~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 202 TSAIKAIVDAGGVEVLQKLLTSTD-SEVQKEAQRALENIKSGGW 244 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHTCB
T ss_pred HHHHHHHHHCCCHHHHHHHHCCCc-HHHHHHHHHHHHHHHcCCC
Confidence 566778889999999999999875 7899999999999986543
No 19
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.95 E-value=7.2e-26 Score=201.52 Aligned_cols=223 Identities=15% Similarity=0.155 Sum_probs=196.5
Q ss_pred HhHHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCC-ch
Q 044293 7 RETINNCVSRSQ-SDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNP-DL 84 (236)
Q Consensus 7 ~~~i~~lv~~L~-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~-~~ 84 (236)
.+.||.||++|+ ++++++|..|+++|.+++.++++++..+.+. |+||.|+.+|.++++++++.|+++|+|++.+. ++
T Consensus 118 ~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~-Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~ 196 (529)
T 3tpo_A 118 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDG-GAIPAFISLLASPHAHISEQAVWALGNIAGAGSAF 196 (529)
T ss_dssp TTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHT-THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC-CCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHH
Confidence 468999999996 4568999999999999999988999999998 99999999999999999999999999999875 56
Q ss_pred hHHhhhcccHHHHHHHHhccC----CHHHHHHHHHHHHHhcccchhhhhhcc-cCcHHHHHHhhcCCCcHHHHHHHHHHH
Q 044293 85 KQSLASMETIYRLNWIIQSSS----SQETVKLASSLICSLAMLDKNKARFGV-AGTVQVLVKAVSAPSNPAGHHLLSSLA 159 (236)
Q Consensus 85 ~~~i~~~g~i~~L~~lL~~~~----~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~aL~ 159 (236)
|..+.+.|++++|+.+|.... ....+..++++|.+++........+.. .|++|.|++++.++++.++..++++|.
T Consensus 197 r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~ 276 (529)
T 3tpo_A 197 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAIS 276 (529)
T ss_dssp HHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 889999999999999998652 356788999999999998766655544 789999999999999999999999999
Q ss_pred HHhcCCCCh-HHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC-ChhhHHHHHhcCCcHHHHHHHhhCCcc
Q 044293 160 ELVQFHGNS-TLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR-FDEGMIALTKTDQIVSLMVDVLKGRSM 232 (236)
Q Consensus 160 ~L~~~~~~~-~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~~i~~lv~~l~~~~~ 232 (236)
+++.++.++ ..+++.|++|.|+.+|.+.+ ..++..|+.+|.|++. +++.+..+...|+ ++.|+.+++++++
T Consensus 277 ~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~-~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~-l~~L~~LL~~~~~ 349 (529)
T 3tpo_A 277 YLTDGPNERIEMVVKKGVVPQLVKLLGATE-LPIVTPALRAIGNIVTGTDEQTQKVIDAGA-LAVFPSLLTNPKT 349 (529)
T ss_dssp HHHSSCHHHHHHHHTTTCHHHHHHHHTCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTG-GGGHHHHTTCSSH
T ss_pred HhhhhhhhhHHHHHhccchHHHHHHhcCCC-hhHHHHHHHHHHHHHccchHHHHHHhhccc-HHHHHHHHcCCCH
Confidence 999977555 45677999999999999875 7899999999999986 5678888999987 8999999987654
No 20
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.94 E-value=1.6e-25 Score=198.52 Aligned_cols=220 Identities=14% Similarity=0.133 Sum_probs=185.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-ChHHHHHHHhccCcHHHHHhhccC-CChHHHHHHHHHHHhhCCCC-chh
Q 044293 9 TINNCVSRSQSDSYEDQQKALQTLASITRV-SPQYRSLLAQTDGAISTLLGLSKS-SSPIIRTLSLSILLNLSLNP-DLK 85 (236)
Q Consensus 9 ~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~-~~~ 85 (236)
.|+.+|+.+++++++.|..|+..++++... .....+.+++. |+||.||++|++ +++++|..|+++|.|++.++ +++
T Consensus 58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~-G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~ 136 (510)
T 3ul1_B 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRA-GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 136 (510)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHT-THHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHC-CCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 489999999999999999999999986543 22235778888 999999999975 46899999999999998765 568
Q ss_pred HHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccc-hhhhhhcccCcHHHHHHhhcCCCc-----HHHHHHHHHHH
Q 044293 86 QSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLD-KNKARFGVAGTVQVLVKAVSAPSN-----PAGHHLLSSLA 159 (236)
Q Consensus 86 ~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~-----~~~~~a~~aL~ 159 (236)
..+++.|+||.|+.+|+++ +.++++.|+++|.|++.+. +.+..+.+.|++++|+.++.+.+. ...+.++++|.
T Consensus 137 ~~vv~~GaIp~Lv~lL~s~-~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~ 215 (510)
T 3ul1_B 137 KAVVDGGAIPAFISLLASP-HAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLS 215 (510)
T ss_dssp HHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHH
Confidence 8899999999999999998 8999999999999999864 678888889999999999987653 35788999999
Q ss_pred HHhcCCCChHH-HHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChhh-HHHHHhcCCcHHHHHHHhhCCcc
Q 044293 160 ELVQFHGNSTL-AVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEG-MIALTKTDQIVSLMVDVLKGRSM 232 (236)
Q Consensus 160 ~L~~~~~~~~~-~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~-~~~i~~~g~~i~~lv~~l~~~~~ 232 (236)
+++.+...... ....|++|.|+.++.+.+ .+++..|+++|.+|+.+++. ...+...|+ ++.|++++++.++
T Consensus 216 nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~-~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~-i~~Lv~lL~~~~~ 288 (510)
T 3ul1_B 216 NLCRNKNPAPPLDAVEQILPTLVRLLHHND-PEVLADSCWAISYLTDGPNERIEMVVKKGV-VPQLVKLLGATEL 288 (510)
T ss_dssp HHHCCCSSCCCHHHHHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHTSSCHHHHHHHHTTTC-HHHHHHHHTCSCH
T ss_pred HHhhcccchhHHHHHHhHHHHHHHHHhcCC-HHHHHHHHHHHHHHhhchhhhHHHHHhccc-chhhhhhhcCCCh
Confidence 99997655444 345789999999999885 78999999999999987654 455666665 8999999987654
No 21
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.94 E-value=7.9e-25 Score=180.90 Aligned_cols=208 Identities=14% Similarity=0.147 Sum_probs=179.5
Q ss_pred hHHHhHHHHHHHHhcCCC------------HHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHh-hccCCChHHHHH
Q 044293 4 PRVRETINNCVSRSQSDS------------YEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLG-LSKSSSPIIRTL 70 (236)
Q Consensus 4 ~~~~~~i~~lv~~L~~~~------------~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~-lL~~~~~~~~~~ 70 (236)
++..+.++..+..|++++ .+.+..|+..|..++.+ .++...|.+. |++|.|+. +|+++++.+++.
T Consensus 24 ~d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~-~dna~~~~~~-G~l~~Lv~~lL~s~~~~vr~~ 101 (296)
T 1xqr_A 24 RGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCEN-MDNAADFCQL-SGMHLLVGRYLEAGAAGLRWR 101 (296)
T ss_dssp HHHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHT-THHHHHHHTTTTCSSHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhC-hhhHHHHHHc-CCHHHHHHHHHcCCCHHHHHH
Confidence 555677888888887652 24677899999999986 6788889998 99999999 999999999999
Q ss_pred HHHHHHhhCCCC-chhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccc-hhhhhhcccCcHHHHHHhhcCCCc
Q 044293 71 SLSILLNLSLNP-DLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLD-KNKARFGVAGTVQVLVKAVSAPSN 148 (236)
Q Consensus 71 a~~~L~~l~~~~-~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~ 148 (236)
|+++|.+++.+. ..+..+++.|++++|+.+|+++.+..+++.|+++|.+++... .....+.+.|++|.|+.+|+++++
T Consensus 102 Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~ 181 (296)
T 1xqr_A 102 AAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQ 181 (296)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCH
T ss_pred HHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCH
Confidence 999999999875 468888899999999999996436899999999999999765 456677789999999999999999
Q ss_pred HHHHHHHHHHHHHhcC-CCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCC-hhhHHHHH
Q 044293 149 PAGHHLLSSLAELVQF-HGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARF-DEGMIALT 214 (236)
Q Consensus 149 ~~~~~a~~aL~~L~~~-~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~ 214 (236)
.++..|+++|.+++.+ ++.+..+++.|++|+|+.+|.+.+ ..+++.|+.+|.+++.. +.....+.
T Consensus 182 ~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d-~~v~~~al~aL~~l~~~~~~~~~~~~ 248 (296)
T 1xqr_A 182 KLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEH-SPFHEHVLGALCSLVTDFPQGVRECR 248 (296)
T ss_dssp HHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCC-STHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCC-hhHHHHHHHHHHHHHhCChhHHHHHh
Confidence 9999999999999985 667888999999999999999874 78999999999999976 44444443
No 22
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.94 E-value=5.8e-25 Score=195.21 Aligned_cols=221 Identities=12% Similarity=0.109 Sum_probs=196.4
Q ss_pred HhHHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCC-ch
Q 044293 7 RETINNCVSRSQSDS-YEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNP-DL 84 (236)
Q Consensus 7 ~~~i~~lv~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~-~~ 84 (236)
.+.|+.|+++|++++ ++++..|+++|.+++..+++++..+.+. |++|.|+.+|.++++.+++.|+++|.+++.+. .+
T Consensus 116 ~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~-g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~ 194 (528)
T 4b8j_A 116 SGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDH-GAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKC 194 (528)
T ss_dssp TTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHT-THHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHH
T ss_pred CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhC-CcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhh
Confidence 368999999999876 9999999999999999888999999998 99999999999999999999999999999875 46
Q ss_pred hHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcC
Q 044293 85 KQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQF 164 (236)
Q Consensus 85 ~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~ 164 (236)
+..+.+.|++++|+.+|..+.+..++..|+++|.+|+............|+++.|+.+|.+.++.++..++++|.+++..
T Consensus 195 ~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~ 274 (528)
T 4b8j_A 195 RDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDG 274 (528)
T ss_dssp HHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcC
Confidence 88888999999999999543389999999999999998864444445589999999999999999999999999999987
Q ss_pred CCCh-HHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC-ChhhHHHHHhcCCcHHHHHHHhhCC
Q 044293 165 HGNS-TLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR-FDEGMIALTKTDQIVSLMVDVLKGR 230 (236)
Q Consensus 165 ~~~~-~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~~i~~lv~~l~~~ 230 (236)
...+ ..+++.|++|.|+.+|.+++ +.++..|+.+|.+++. +++.+..+.+.|+ ++.|+.+|+++
T Consensus 275 ~~~~~~~~~~~g~v~~Lv~lL~~~~-~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~-l~~L~~lL~~~ 340 (528)
T 4b8j_A 275 TNDKIQAVIEAGVCPRLVELLLHPS-PSVLIPALRTVGNIVTGDDAQTQCIIDHQA-LPCLLSLLTQN 340 (528)
T ss_dssp CHHHHHHHHHTTCHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHTTTH-HHHHHHHHHSC
T ss_pred CHHHHHHHHHcCHHHHHHHHHcCCC-hhHHHHHHHHHHHHHcCCHHHHHHHHHhhh-HHHHHHHHcCC
Confidence 6554 56778999999999999885 7899999999999997 5677888888875 89999999876
No 23
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.93 E-value=2.6e-25 Score=196.75 Aligned_cols=223 Identities=14% Similarity=0.108 Sum_probs=199.1
Q ss_pred HHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCC-ChHHHHHHHHHHHhhCCCCch
Q 044293 6 VRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSS-SPIIRTLSLSILLNLSLNPDL 84 (236)
Q Consensus 6 ~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~ 84 (236)
..+.|+.|+.+|+++++.++..|+..|.+++.+ +.++..+...+|+++.|+.+|.++ +++++..++.+|.+++.++++
T Consensus 15 ~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~-~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~ 93 (529)
T 1jdh_A 15 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG 93 (529)
T ss_dssp --CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTS-HHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHH
T ss_pred hHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcC-CccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchh
Confidence 367899999999999999999999999999987 456766665448999999999754 889999999999999999999
Q ss_pred hHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccc-hhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhc
Q 044293 85 KQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLD-KNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQ 163 (236)
Q Consensus 85 ~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~ 163 (236)
+..+.+.|+++.|+.+|+++ +++++..|+++|.+++.++ ..+..+.+.|++|.|++++.+++..++..++.+|.+++.
T Consensus 94 ~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~ 172 (529)
T 1jdh_A 94 LLAIFKSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY 172 (529)
T ss_dssp HHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999998 8999999999999999874 567777789999999999999998999999999999998
Q ss_pred C-CCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChhhHHHHHhcCCcHHHHHHHhhCCc
Q 044293 164 F-HGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGMIALTKTDQIVSLMVDVLKGRS 231 (236)
Q Consensus 164 ~-~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~~i~~lv~~l~~~~ 231 (236)
. ++++..+.+.|+++.+++++++++.....+.++.+|.+++.+++++..+.+.|+ ++.|++++++++
T Consensus 173 ~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~-~~~L~~ll~~~~ 240 (529)
T 1jdh_A 173 GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGG-MQALGLHLTDPS 240 (529)
T ss_dssp TCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTH-HHHHHTTTTSSC
T ss_pred CCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCC-HHHHHHHHhCCC
Confidence 4 678888999999999999998876567788999999999999999999999986 899999987764
No 24
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.93 E-value=1.2e-24 Score=193.55 Aligned_cols=222 Identities=12% Similarity=0.126 Sum_probs=193.2
Q ss_pred HHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCc-
Q 044293 5 RVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPD- 83 (236)
Q Consensus 5 ~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~- 83 (236)
.+.+.+|.|+.+|.+++++++..|+++|.+++..+++....+.+. |++|.|+.+|.++++.++..++.+|.|++.+++
T Consensus 248 ~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~-g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~ 326 (529)
T 3tpo_A 248 AVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKK-GVVPQLVKLLGATELPIVTPALRAIGNIVTGTDE 326 (529)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTT-TCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhc-cchHHHHHHhcCCChhHHHHHHHHHHHHHccchH
Confidence 347789999999999999999999999999999888888888888 999999999999999999999999999988765
Q ss_pred hhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccc-hhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHh
Q 044293 84 LKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLD-KNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELV 162 (236)
Q Consensus 84 ~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~ 162 (236)
.+..+.+.|+++.|+.+|+++ ++++++.|+|+|.|++... +.+..+.+.|++|.|+.++.+++..++..|+++|.|++
T Consensus 327 ~~~~i~~~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~ 405 (529)
T 3tpo_A 327 QTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYT 405 (529)
T ss_dssp HHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 577888999999999999998 8999999999999998755 55677778999999999999999999999999999999
Q ss_pred cC--CCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCC-------hhhHHHHHhcCCcHHHHHHHhhCC
Q 044293 163 QF--HGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARF-------DEGMIALTKTDQIVSLMVDVLKGR 230 (236)
Q Consensus 163 ~~--~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~-------~~~~~~i~~~g~~i~~lv~~l~~~ 230 (236)
.+ ++.+..+++.|++++|+++|...+ +++...++.+|.|+... +..+..|.++|| +..+-.+..+.
T Consensus 406 ~~~~~~~~~~l~~~g~i~~L~~LL~~~d-~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~gg-l~~ie~Lq~~~ 480 (529)
T 3tpo_A 406 SGGTVEQIVYLVHCGIIEPLMNLLSAKD-TKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGG-LDKIEALQRHE 480 (529)
T ss_dssp HHSCHHHHHHHHHTTCHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-HHHHTGGGGCS
T ss_pred cCCCHHHHHHHHHCcCHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCc-HHHHHHHHcCC
Confidence 74 456778999999999999999885 78889999999998631 233556778888 67765554443
No 25
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.93 E-value=1.4e-24 Score=192.68 Aligned_cols=222 Identities=14% Similarity=0.124 Sum_probs=193.1
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCh-HHHHHHHhccCcHHHHHhhccCCC-hHHHHHHHHHHHhhCCC-Cc
Q 044293 7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSP-QYRSLLAQTDGAISTLLGLSKSSS-PIIRTLSLSILLNLSLN-PD 83 (236)
Q Consensus 7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~-~~~~~i~~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~l~~~-~~ 83 (236)
...|+.+++.|++++++.+..|++.|++++.... .....+.+. |++|.|+.+|.+++ +.++..|+++|.+++.+ ++
T Consensus 73 ~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~-g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~ 151 (528)
T 4b8j_A 73 LESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQS-GVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSE 151 (528)
T ss_dssp --CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHT-TCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHC-CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence 4569999999999999999999999999976543 567778887 99999999999876 89999999999999997 56
Q ss_pred hhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccc-hhhhhhcccCcHHHHHHhh-cCCCcHHHHHHHHHHHHH
Q 044293 84 LKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLD-KNKARFGVAGTVQVLVKAV-SAPSNPAGHHLLSSLAEL 161 (236)
Q Consensus 84 ~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~a~~aL~~L 161 (236)
++..+++.|++++|+.+|+++ +++++..|+++|.+++.+. .++..+.+.|++++|+.+| .+.++.++..++++|.+|
T Consensus 152 ~~~~~~~~g~i~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L 230 (528)
T 4b8j_A 152 NTKVVIDHGAVPIFVKLLGSS-SDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNF 230 (528)
T ss_dssp HHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHhcCC-CHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 788888999999999999998 8999999999999999764 5688888899999999999 566788999999999999
Q ss_pred hcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChhh-HHHHHhcCCcHHHHHHHhhCCcc
Q 044293 162 VQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEG-MIALTKTDQIVSLMVDVLKGRSM 232 (236)
Q Consensus 162 ~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~-~~~i~~~g~~i~~lv~~l~~~~~ 232 (236)
|............|++|.|+.++.+.+ +.++..|+.+|.+++..++. ...+...|+ ++.|+.+|++.++
T Consensus 231 ~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~-v~~Lv~lL~~~~~ 300 (528)
T 4b8j_A 231 CRGKPQPSFEQTRPALPALARLIHSND-EEVLTDACWALSYLSDGTNDKIQAVIEAGV-CPRLVELLLHPSP 300 (528)
T ss_dssp HCSSSCCCHHHHTTHHHHHHHHTTCCC-HHHHHHHHHHHHHHTSSCHHHHHHHHHTTC-HHHHHHHTTCSCH
T ss_pred HcCCCCCcHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHcCH-HHHHHHHHcCCCh
Confidence 998666556667999999999998875 78999999999999987654 466777776 8999999987653
No 26
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.93 E-value=4.3e-25 Score=173.25 Aligned_cols=180 Identities=16% Similarity=0.168 Sum_probs=162.9
Q ss_pred CcHHHHHhhccCCChHHHHHHHHHHHhhCCC-CchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcc-cchhhh
Q 044293 51 GAISTLLGLSKSSSPIIRTLSLSILLNLSLN-PDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAM-LDKNKA 128 (236)
Q Consensus 51 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~-~~~~~~ 128 (236)
|+.+.|+.+|++++++++..|+++|.+++.. ++++..+.+.|+++.|+.+|+++ +++++..|+++|.+++. +++++.
T Consensus 12 ~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 12 SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp -CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred chhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcHHHH
Confidence 8999999999999999999999999999955 56688899999999999999998 89999999999999995 567888
Q ss_pred hhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCC-CChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCC-
Q 044293 129 RFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFH-GNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARF- 206 (236)
Q Consensus 129 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~-~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~- 206 (236)
.+.+.|+++.|+++|.++++.++..|+++|.+++.+. +.+..+++.|++|.|++++.+++ ..+++.|+.+|.+++.+
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~aL~~l~~~~ 169 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGG 169 (210)
T ss_dssp HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSC
T ss_pred HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCC
Confidence 8999999999999999999999999999999999754 55677889999999999999874 78999999999999986
Q ss_pred hhhHHHHHhcCCcHHHHHHHhhCCccc
Q 044293 207 DEGMIALTKTDQIVSLMVDVLKGRSMF 233 (236)
Q Consensus 207 ~~~~~~i~~~g~~i~~lv~~l~~~~~~ 233 (236)
++.+..+.+.|+ ++.|+++++++++.
T Consensus 170 ~~~~~~~~~~g~-i~~L~~ll~~~~~~ 195 (210)
T 4db6_A 170 NEQKQAVKEAGA-LEKLEQLQSHENEK 195 (210)
T ss_dssp HHHHHHHHHTTH-HHHHHHGGGCSCHH
T ss_pred cHHHHHHHHCCC-HHHHHHHHhCCCHH
Confidence 889999999986 89999999987654
No 27
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.93 E-value=1.6e-24 Score=197.04 Aligned_cols=222 Identities=14% Similarity=0.113 Sum_probs=199.4
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCC-ChHHHHHHHHHHHhhCCCCchh
Q 044293 7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSS-SPIIRTLSLSILLNLSLNPDLK 85 (236)
Q Consensus 7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~~ 85 (236)
.+.|+.|+.+|+++++.++..|+.+|.+++.+++ ++..+...+|+++.|+.+|.++ +++++..|+.+|.+++.+++++
T Consensus 13 ~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~-~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~ 91 (644)
T 2z6h_A 13 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEA-SRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL 91 (644)
T ss_dssp TTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTT-HHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred hchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCh-hHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhH
Confidence 5679999999999999999999999999999854 6666654348999999999865 8899999999999999999999
Q ss_pred HHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccc-hhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhc-
Q 044293 86 QSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLD-KNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQ- 163 (236)
Q Consensus 86 ~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~- 163 (236)
..+.+.|+++.|+.+|+++ +++++..|+++|.+++... ..+..+.+.|+++.|+++|.++++.++..++.+|.+++.
T Consensus 92 ~~i~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~ 170 (644)
T 2z6h_A 92 LAIFKSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG 170 (644)
T ss_dssp HHHHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhc
Confidence 9999999999999999998 8999999999999999875 566777789999999999999998888888999999997
Q ss_pred CCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChhhHHHHHhcCCcHHHHHHHhhCCc
Q 044293 164 FHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGMIALTKTDQIVSLMVDVLKGRS 231 (236)
Q Consensus 164 ~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~~i~~lv~~l~~~~ 231 (236)
.++++..+.+.|+++.|+.++.+.+....++.++.+|.+++.++++|..+++.|+ ++.|+++++.++
T Consensus 171 ~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~-l~~L~~ll~~~~ 237 (644)
T 2z6h_A 171 NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGG-MQALGLHLTDPS 237 (644)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTH-HHHHHTTTTCSC
T ss_pred CcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCC-HHHHHHHHhcCC
Confidence 6788999999999999999998876567889999999999999999999999986 899999887654
No 28
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.92 E-value=3.7e-24 Score=189.31 Aligned_cols=223 Identities=17% Similarity=0.164 Sum_probs=196.8
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccC--CChHHHHHHHHHHHhhCCCC-c
Q 044293 7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKS--SSPIIRTLSLSILLNLSLNP-D 83 (236)
Q Consensus 7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~--~~~~~~~~a~~~L~~l~~~~-~ 83 (236)
.+.++.|++++++++++++..|+++|.+++..+++++..+.+. |+++.|+.+|.+ .++++++.++.+|.|++.++ +
T Consensus 265 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~-~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~ 343 (529)
T 1jdh_A 265 EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQV-GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQE 343 (529)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHT-THHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTT
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHc-CChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCch
Confidence 5789999999999999999999999999999888899999998 999999999975 34799999999999998863 3
Q ss_pred ---hhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHH--------
Q 044293 84 ---LKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGH-------- 152 (236)
Q Consensus 84 ---~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~-------- 152 (236)
.+..+.+.|+++.|+++|+++.+.+++..++++|.|++..+.++..+.+.|++|.|+.++.++++.+++
T Consensus 344 ~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n 423 (529)
T 1jdh_A 344 AEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQ 423 (529)
T ss_dssp HHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCc
Confidence 366788999999999999987447999999999999999998888888999999999999875544443
Q ss_pred --------------HHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChhhHHHHHhcCC
Q 044293 153 --------------HLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGMIALTKTDQ 218 (236)
Q Consensus 153 --------------~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~ 218 (236)
.++.+|.+|+.+++++..+.+.|+++.++.++.+++ +.++..+..+|.+++.+++.+..+.+.||
T Consensus 424 ~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~-~~v~~~a~~~l~~l~~~~~~~~~i~~~~~ 502 (529)
T 1jdh_A 424 QQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPI-ENIQRVAAGVLCELAQDKEAAEAIEAEGA 502 (529)
T ss_dssp --CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSHHHHHHHHHTTC
T ss_pred hhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCc-hHHHHHHHHHHHHHhcCHHHHHHHHHcCC
Confidence 566677778888888889999999999999999885 78999999999999999999999999998
Q ss_pred cHHHHHHHhhCCcc
Q 044293 219 IVSLMVDVLKGRSM 232 (236)
Q Consensus 219 ~i~~lv~~l~~~~~ 232 (236)
++.|.+++++.++
T Consensus 503 -~~~L~~l~~~~~~ 515 (529)
T 1jdh_A 503 -TAPLTELLHSRNE 515 (529)
T ss_dssp -HHHHHHGGGCSSH
T ss_pred -hHHHHHHhcCCCH
Confidence 8999999987764
No 29
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.92 E-value=7.5e-24 Score=188.27 Aligned_cols=221 Identities=10% Similarity=0.066 Sum_probs=196.5
Q ss_pred HhHHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCC-ch
Q 044293 7 RETINNCVSRSQSD-SYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNP-DL 84 (236)
Q Consensus 7 ~~~i~~lv~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~-~~ 84 (236)
.+.++.|+++|+++ ++.++..|+++|.+++..+++.+..+.+. |+++.|+.+|.++++++++.|+++|.+++.+. .+
T Consensus 129 ~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~-g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~ 207 (530)
T 1wa5_B 129 AGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDA-DAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 207 (530)
T ss_dssp TTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT-TCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHC-CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccc
Confidence 36899999999987 89999999999999999888888999987 99999999999999999999999999999885 56
Q ss_pred hHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccc-hhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhc
Q 044293 85 KQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLD-KNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQ 163 (236)
Q Consensus 85 ~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~ 163 (236)
+..+...|++++|+.++++. +.+++..|+++|.+|+... .........|+++.|+.+|.++++.++..++++|.+|+.
T Consensus 208 ~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~ 286 (530)
T 1wa5_B 208 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSD 286 (530)
T ss_dssp HHHHHHTTCHHHHHHGGGSC-CHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHS
T ss_pred hHHHHHcCcHHHHHHHhccC-CHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 88888999999999999987 8999999999999999876 444455558999999999999999999999999999998
Q ss_pred CC-CChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCC-hhhHHHHHhcCCcHHHHHHHhhCCc
Q 044293 164 FH-GNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARF-DEGMIALTKTDQIVSLMVDVLKGRS 231 (236)
Q Consensus 164 ~~-~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~g~~i~~lv~~l~~~~ 231 (236)
.. +.+..+++.|++|.|+.+|.+.+ ..++..|+.+|.+++.. ++....+...|+ ++.|+.+|++++
T Consensus 287 ~~~~~~~~~~~~~~v~~Lv~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~-l~~L~~lL~~~~ 354 (530)
T 1wa5_B 287 GPQEAIQAVIDVRIPKRLVELLSHES-TLVQTPALRAVGNIVTGNDLQTQVVINAGV-LPALRLLLSSPK 354 (530)
T ss_dssp SCHHHHHHHHHTTCHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTH-HHHHHHHTTCSC
T ss_pred CCHHHHHHHHhcCcHHHHHHHHCCCC-hhhHHHHHHHHHHHHcCCHHHHHHHHHcch-HHHHHHHHcCCC
Confidence 64 45677788999999999999874 78999999999999964 677777888875 899999998764
No 30
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.92 E-value=2.7e-23 Score=184.68 Aligned_cols=223 Identities=13% Similarity=0.121 Sum_probs=194.4
Q ss_pred HHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC-hHHHHHHHhccCcHHHHHhhccCC-ChHHHHHHHHHHHhhCCCC-
Q 044293 6 VRETINNCVSRSQSDSYEDQQKALQTLASITRVS-PQYRSLLAQTDGAISTLLGLSKSS-SPIIRTLSLSILLNLSLNP- 82 (236)
Q Consensus 6 ~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~- 82 (236)
..+.++.+++.|++++++++..|+..|+++.... ...+..+.+. |++|.|+.+|.++ ++.++..|+++|.+++.+.
T Consensus 85 ~~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~-g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~ 163 (530)
T 1wa5_B 85 LQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQA-GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTS 163 (530)
T ss_dssp --CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHT-TCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCH
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHC-CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCH
Confidence 4567999999999999999999999999986542 3455677887 9999999999987 8999999999999999975
Q ss_pred chhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccc-hhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHH
Q 044293 83 DLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLD-KNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAEL 161 (236)
Q Consensus 83 ~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L 161 (236)
+.+..+++.|+++.|+.+|+++ +++++..|+++|.+++.+. .++..+...|+++.|+.++.+.++.++..++++|.+|
T Consensus 164 ~~~~~~~~~g~i~~Lv~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L 242 (530)
T 1wa5_B 164 AQTKVVVDADAVPLFIQLLYTG-SVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNL 242 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 5678888999999999999988 8999999999999999874 6788888899999999999998889999999999999
Q ss_pred hcCC-CChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCC-hhhHHHHHhcCCcHHHHHHHhhCCcc
Q 044293 162 VQFH-GNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARF-DEGMIALTKTDQIVSLMVDVLKGRSM 232 (236)
Q Consensus 162 ~~~~-~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~g~~i~~lv~~l~~~~~ 232 (236)
+.+. .........|++|.|+.++.+.+ +.++..++.+|.+|+.. ++.+..+...|+ ++.|+.++++.++
T Consensus 243 ~~~~~~~~~~~~~~~~l~~L~~lL~~~d-~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~-v~~Lv~lL~~~~~ 313 (530)
T 1wa5_B 243 CRGKKPQPDWSVVSQALPTLAKLIYSMD-TETLVDACWAISYLSDGPQEAIQAVIDVRI-PKRLVELLSHEST 313 (530)
T ss_dssp HCCSSSCCCHHHHGGGHHHHHHHTTCCC-HHHHHHHHHHHHHHHSSCHHHHHHHHHTTC-HHHHHHGGGCSCH
T ss_pred hCCCCCCCcHHHHHhHHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCCHHHHHHHHhcCc-HHHHHHHHCCCCh
Confidence 9876 56666677899999999999875 78999999999999965 577888888886 8999999987553
No 31
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.92 E-value=1.1e-22 Score=176.35 Aligned_cols=221 Identities=11% Similarity=0.067 Sum_probs=193.1
Q ss_pred hHHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCC-chh
Q 044293 8 ETINNCVSRSQSD-SYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNP-DLK 85 (236)
Q Consensus 8 ~~i~~lv~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~-~~~ 85 (236)
+.++.|+++|+++ +++++..|+++|.+++..++++...+.+. |++|.|+.+|+++++++++.|+++|.+++.+. ..+
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~ 142 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQA-GAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCR 142 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHT-THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhC-CCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHH
Confidence 6899999999988 89999999999999999877888888887 99999999999999999999999999999986 468
Q ss_pred HHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccc--hhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhc
Q 044293 86 QSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLD--KNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQ 163 (236)
Q Consensus 86 ~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~--~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~ 163 (236)
..+.+.|+++.|+.+++++.+.+++..|+++|.+++... ..+..+. .+++|.|++++.++++.++..++++|.+++.
T Consensus 143 ~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~ 221 (450)
T 2jdq_A 143 DYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSD 221 (450)
T ss_dssp HHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHC
Confidence 888899999999999996337999999999999999764 3333333 7999999999999999999999999999998
Q ss_pred CC-CChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCCh-hhHHHHHhcCCcHHHHHHHhhCCcc
Q 044293 164 FH-GNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFD-EGMIALTKTDQIVSLMVDVLKGRSM 232 (236)
Q Consensus 164 ~~-~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~-~~~~~i~~~g~~i~~lv~~l~~~~~ 232 (236)
.. +.+..+.+.|++|.++.+|.+.+ ..++..|+.+|.+++.+. +.+..+.+.|+ ++.++.++++.++
T Consensus 222 ~~~~~~~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~-l~~L~~ll~~~~~ 290 (450)
T 2jdq_A 222 GPNDKIQAVIDAGVCRRLVELLMHND-YKVVSPALRAVGNIVTGDDIQTQVILNCSA-LQSLLHLLSSPKE 290 (450)
T ss_dssp SSHHHHHHHHHTTTHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHTTTH-HHHHHHHTTCSSH
T ss_pred CCcHHHHHHHHcCcHHHHHHHHCCCc-hhHHHHHHHHHHHHhhCChHHHHHHHHCcc-HHHHHHHHcCCCH
Confidence 64 56677788999999999998774 789999999999999764 55666777775 8999999987653
No 32
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.92 E-value=2.7e-23 Score=188.89 Aligned_cols=223 Identities=17% Similarity=0.157 Sum_probs=198.7
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCC--ChHHHHHHHHHHHhhCCCCc-
Q 044293 7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSS--SPIIRTLSLSILLNLSLNPD- 83 (236)
Q Consensus 7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~l~~~~~- 83 (236)
.+.++.|+++|++++++++..|+++|.+++..++.+++.+.+. |+++.|+.+|.+. .+.++..++.+|.+++.+..
T Consensus 262 ~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~-g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~ 340 (644)
T 2z6h_A 262 EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQV-GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQE 340 (644)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT-THHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTT
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc-CCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCch
Confidence 5789999999999999999999999999999888899999998 9999999999763 37999999999999987532
Q ss_pred ---hhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCC-------------
Q 044293 84 ---LKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPS------------- 147 (236)
Q Consensus 84 ---~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~------------- 147 (236)
.+..+.+.|+++.|+++|+++.+.++++.|+++|.|++..+.++..+.+.|+++.|+++|.+.+
T Consensus 341 ~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n 420 (644)
T 2z6h_A 341 AEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQ 420 (644)
T ss_dssp HHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC-------
T ss_pred HHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhcccc
Confidence 3555778999999999999874579999999999999999988988889999999999997632
Q ss_pred ---------cHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChhhHHHHHhcCC
Q 044293 148 ---------NPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGMIALTKTDQ 218 (236)
Q Consensus 148 ---------~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~ 218 (236)
..++..++.+|++|+.++.++..+.+.|++|.++++|.+.+ +.++..++.+|.+++.+++.+..+.+.||
T Consensus 421 ~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~-~~v~~~a~~aL~~l~~~~~~~~~i~~~g~ 499 (644)
T 2z6h_A 421 QQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPI-ENIQRVAAGVLCELAQDKEAAEAIEAEGA 499 (644)
T ss_dssp ---CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSHHHHHHHHHTTC
T ss_pred chhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCHHHHHHHHHcCC
Confidence 34667899999999999989999999999999999999875 78999999999999999999999999998
Q ss_pred cHHHHHHHhhCCcc
Q 044293 219 IVSLMVDVLKGRSM 232 (236)
Q Consensus 219 ~i~~lv~~l~~~~~ 232 (236)
++.|.+++++.++
T Consensus 500 -l~~L~~ll~~~~~ 512 (644)
T 2z6h_A 500 -TAPLTELLHSRNE 512 (644)
T ss_dssp -HHHHHHHTTCSCH
T ss_pred -hhHHHHHHcCCCH
Confidence 8999999987764
No 33
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.91 E-value=9.2e-23 Score=176.78 Aligned_cols=221 Identities=14% Similarity=0.154 Sum_probs=193.8
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccC-CChHHHHHHHHHHHhhCCCC--c
Q 044293 7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKS-SSPIIRTLSLSILLNLSLNP--D 83 (236)
Q Consensus 7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~--~ 83 (236)
.+.++.|+++|++++++++..|+++|.+++..++.++..+.+. |+++.|+.++.+ .++.++..++++|.+++.+. .
T Consensus 106 ~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~ 184 (450)
T 2jdq_A 106 AGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDC-NILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPP 184 (450)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT-TCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSC
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHC-CCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCC
Confidence 4689999999999999999999999999999988899999987 999999999985 68899999999999999765 3
Q ss_pred hhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccc-hhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHh
Q 044293 84 LKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLD-KNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELV 162 (236)
Q Consensus 84 ~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~ 162 (236)
.+..+. .++++.|+.+++++ +++++..++++|.+++... +++..+.+.|+++.|+++|.++++.++..|+++|.+++
T Consensus 185 ~~~~~~-~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 262 (450)
T 2jdq_A 185 PEFAKV-SPCLNVLSWLLFVS-DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIV 262 (450)
T ss_dssp CCGGGT-GGGHHHHHHHTTCC-CHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred CCHHHH-HHHHHHHHHHHccC-CHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHh
Confidence 333443 88999999999988 8999999999999999864 55667777899999999999999999999999999999
Q ss_pred cCCCC-hHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC-ChhhHHHHHhcCCcHHHHHHHhhCCcc
Q 044293 163 QFHGN-STLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR-FDEGMIALTKTDQIVSLMVDVLKGRSM 232 (236)
Q Consensus 163 ~~~~~-~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~~i~~lv~~l~~~~~ 232 (236)
...+. ++.+.+.|++|.++.++.+++ +.++..|+.+|.+++. +++....+.+.|+ ++.++++++++++
T Consensus 263 ~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~-l~~L~~~l~~~~~ 332 (450)
T 2jdq_A 263 TGDDIQTQVILNCSALQSLLHLLSSPK-ESIKKEACWTISNITAGNRAQIQTVIDANI-FPALISILQTAEF 332 (450)
T ss_dssp TSCHHHHHHHHTTTHHHHHHHHTTCSS-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTH-HHHHHHHHHHSCH
T ss_pred hCChHHHHHHHHCccHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHCCC-HHHHHHHHhcCCH
Confidence 87554 455778899999999999874 7899999999999996 6778888888875 8999999987654
No 34
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.91 E-value=3.3e-23 Score=192.02 Aligned_cols=224 Identities=17% Similarity=0.165 Sum_probs=198.5
Q ss_pred HHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccC-CC-hHHHHHHHHHHHhhCCCC-
Q 044293 6 VRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKS-SS-PIIRTLSLSILLNLSLNP- 82 (236)
Q Consensus 6 ~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~-~~-~~~~~~a~~~L~~l~~~~- 82 (236)
..+.|+.|+++|++++++++..|+++|.+++..++.++..+.+. |+++.|+.+|.+ .+ +.++..|+.+|.+|+...
T Consensus 397 ~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~-g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~ 475 (780)
T 2z6g_A 397 MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQV-GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ 475 (780)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTT-THHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSST
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHC-CCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCc
Confidence 35789999999999999999999999999999888899999998 999999999975 33 489999999999998754
Q ss_pred c---hhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCC------------
Q 044293 83 D---LKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPS------------ 147 (236)
Q Consensus 83 ~---~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~------------ 147 (236)
+ .+..+...|+++.|+.+|.++...++++.|+++|.|++..+.++..+.+.|+++.|+++|.+++
T Consensus 476 ~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~ 555 (780)
T 2z6g_A 476 DAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGT 555 (780)
T ss_dssp THHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC----
T ss_pred hHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccc
Confidence 3 2557778999999999999884469999999999999999888888888999999999997532
Q ss_pred ----------cHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChhhHHHHHhcC
Q 044293 148 ----------NPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGMIALTKTD 217 (236)
Q Consensus 148 ----------~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g 217 (236)
.+++..++.+|++|+.++.++..+.+.|++|.|+.+|.+.+ +.++..|+.+|.+++.+++.+..+.+.|
T Consensus 556 nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~-~~v~~~a~~aL~~L~~~~~~~~~i~~~g 634 (780)
T 2z6g_A 556 QQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPI-ENIQRVAAGVLCELAQDKEAAEAIEAEG 634 (780)
T ss_dssp --CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSC-HHHHHHHHHHHHHHHTSHHHHHHHHHTT
T ss_pred cchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCHHHHHHHHHCC
Confidence 24567899999999998888988999999999999999874 7899999999999999999999999999
Q ss_pred CcHHHHHHHhhCCcc
Q 044293 218 QIVSLMVDVLKGRSM 232 (236)
Q Consensus 218 ~~i~~lv~~l~~~~~ 232 (236)
| ++.|++++++.++
T Consensus 635 ~-i~~L~~Ll~~~~~ 648 (780)
T 2z6g_A 635 A-TAPLTELLHSRNE 648 (780)
T ss_dssp C-HHHHHHGGGCSCH
T ss_pred C-HHHHHHHHcCCCH
Confidence 8 8999999987664
No 35
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.91 E-value=2.3e-23 Score=193.15 Aligned_cols=222 Identities=14% Similarity=0.107 Sum_probs=198.6
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCC-ChHHHHHHHHHHHhhCCCCchh
Q 044293 7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSS-SPIIRTLSLSILLNLSLNPDLK 85 (236)
Q Consensus 7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~~ 85 (236)
.+.|+.|+.+|+++++.+|..|+.+|.+++.+ ..++..+...+|+++.|+.+|+++ +++++..|+.+|.+++.+++++
T Consensus 149 ~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~-~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~ 227 (780)
T 2z6g_A 149 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGL 227 (780)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTS-HHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHH
T ss_pred hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCC-ChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhH
Confidence 67899999999999999999999999999987 456777765448999999999755 8899999999999999999999
Q ss_pred HHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccc-hhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhc-
Q 044293 86 QSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLD-KNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQ- 163 (236)
Q Consensus 86 ~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~- 163 (236)
..+.+.|+|+.|+.+|+++ ++.++..|+++|.+|+... ..+..+.+.|+++.|+++|.+++..++..++.+|.+++.
T Consensus 228 ~~i~~~g~I~~Lv~lL~~~-~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~ 306 (780)
T 2z6g_A 228 LAIFKSGGIPALVNMLGSP-VDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG 306 (780)
T ss_dssp HHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence 9999999999999999998 8999999999999999875 556667679999999999999988899999999999997
Q ss_pred CCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChhhHHHHHhcCCcHHHHHHHhhCCc
Q 044293 164 FHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGMIALTKTDQIVSLMVDVLKGRS 231 (236)
Q Consensus 164 ~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~~i~~lv~~l~~~~ 231 (236)
+++++..+++.|+++.|+.++++++.....+.++.+|.+|+.+++++..+++.|+ ++.|+.++++++
T Consensus 307 ~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~-l~~Ll~lL~~~~ 373 (780)
T 2z6g_A 307 NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGG-MQALGLHLTDPS 373 (780)
T ss_dssp CHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTH-HHHHGGGTTCSC
T ss_pred ChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhch-HHHHHHHHcCCc
Confidence 4678888999999999999999876566778999999999999999999999986 899999887654
No 36
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.89 E-value=7.7e-22 Score=162.99 Aligned_cols=199 Identities=17% Similarity=0.134 Sum_probs=161.7
Q ss_pred HhHHHHHHH-HhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccC-CChHHHHHHHHHHHhhCCCC-c
Q 044293 7 RETINNCVS-RSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKS-SSPIIRTLSLSILLNLSLNP-D 83 (236)
Q Consensus 7 ~~~i~~lv~-~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~-~ 83 (236)
.+.++.|+. +|++++++++..|+++|.+++.+++..++.+.+. |++|.|+.+|++ +++.++++|+++|.+++.+. .
T Consensus 80 ~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~-g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~ 158 (296)
T 1xqr_A 80 LSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGL-GALRKLLRLLDRDACDTVRVKALFAISCLVREQEA 158 (296)
T ss_dssp TTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHT-THHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred cCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHC-CCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcH
Confidence 468999999 9999999999999999999999999999999998 999999999986 47899999999999998765 4
Q ss_pred hhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhccc-chhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHh
Q 044293 84 LKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAML-DKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELV 162 (236)
Q Consensus 84 ~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~ 162 (236)
....+.+.|++++|+.+|+++ +..++..|+|+|.+++.. ++.+..+.+.|++++|+.+|.++++.+++.++++|.++.
T Consensus 159 ~~~~~~~~ggi~~L~~lL~~~-d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~ 237 (296)
T 1xqr_A 159 GLLQFLRLDGFSVLMRAMQQQ-VQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLV 237 (296)
T ss_dssp HHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHH
Confidence 577888899999999999998 899999999999999875 567888889999999999999999999999999999999
Q ss_pred cCCCChHHHHHhC--cHHH----HHHHhcCCC-hhhHHHHHHHHHHHHcCCh
Q 044293 163 QFHGNSTLAVRAG--AVSE----LIHLIGSTE-AEDLAGTSLAVLNLLARFD 207 (236)
Q Consensus 163 ~~~~~~~~~~~~g--~i~~----lv~ll~~~~-~~~~~~~a~~~L~~l~~~~ 207 (236)
.........+..+ .+.. -++-++..+ ..++.+.|..++.+....+
T Consensus 238 ~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~~~ 289 (296)
T 1xqr_A 238 TDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFSSP 289 (296)
T ss_dssp TTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC--
T ss_pred hCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcCCC
Confidence 8732211111211 1222 223333222 3567778888887776543
No 37
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.85 E-value=7e-21 Score=172.52 Aligned_cols=224 Identities=12% Similarity=0.091 Sum_probs=183.4
Q ss_pred HhHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCh-------------------------------------H-HHHHHH
Q 044293 7 RETINNCVSRSQS-DSYEDQQKALQTLASITRVSP-------------------------------------Q-YRSLLA 47 (236)
Q Consensus 7 ~~~i~~lv~~L~~-~~~~~~~~a~~~L~~l~~~~~-------------------------------------~-~~~~i~ 47 (236)
++.++.|++++++ ++.+..-.++..|.|++...+ + ++..+.
T Consensus 375 ~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~ 454 (778)
T 3opb_A 375 ESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYIL 454 (778)
T ss_dssp HHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHH
Confidence 5679999999985 677788889999999987422 1 567888
Q ss_pred hccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccCCHH---HHHHHHHHHHHhcccc
Q 044293 48 QTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQE---TVKLASSLICSLAMLD 124 (236)
Q Consensus 48 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~---~~~~a~~~L~~Ls~~~ 124 (236)
++ |+||.|+.+++++++.+++.++++|.|++.++++|..+++.|++++|+.+|.++ ... .+..|+.+|.+++...
T Consensus 455 ea-GvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~-~~~~~~~k~~AA~ALArLlis~ 532 (778)
T 3opb_A 455 RT-ELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANK-QDIGEPIRILGCRALTRMLIFT 532 (778)
T ss_dssp TT-THHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC----CCHHHHHHHHHHHHHHHTS
T ss_pred HC-cCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CCcchHHHHHHHHHHHHHHhcC
Confidence 88 999999999999999999999999999999999999999999999999999987 333 7999999999999776
Q ss_pred hhhhhhcc---cCcHHHHHHhhcC-CCc-------------HHHHHHHHHHHHHhcCCC-----ChHHHHH-hCcHHHHH
Q 044293 125 KNKARFGV---AGTVQVLVKAVSA-PSN-------------PAGHHLLSSLAELVQFHG-----NSTLAVR-AGAVSELI 181 (236)
Q Consensus 125 ~~~~~i~~---~g~i~~Lv~lL~~-~~~-------------~~~~~a~~aL~~L~~~~~-----~~~~~~~-~g~i~~lv 181 (236)
++...+.. .|+|++|+.+|.. +.. ..+..|+.||.||+..++ .|..+++ .|++|.+.
T Consensus 533 np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~ 612 (778)
T 3opb_A 533 NPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIE 612 (778)
T ss_dssp CHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHH
T ss_pred CHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHH
Confidence 66655532 4999999999983 211 126799999999999874 3777888 49999999
Q ss_pred HHhcCCChhhHHHHHHHHHHHHcCChhhH-HHHHhcCC-----cHHHHHHHhhCCccc
Q 044293 182 HLIGSTEAEDLAGTSLAVLNLLARFDEGM-IALTKTDQ-----IVSLMVDVLKGRSMF 233 (236)
Q Consensus 182 ~ll~~~~~~~~~~~a~~~L~~l~~~~~~~-~~i~~~g~-----~i~~lv~~l~~~~~~ 233 (236)
.+|.+. +..++..|+.+++||+.+++++ ..+...+. -++.|+.++..++..
T Consensus 613 ~LL~s~-n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~ 669 (778)
T 3opb_A 613 NLMLDE-NVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVE 669 (778)
T ss_dssp HGGGCS-SHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHH
T ss_pred HHHhCC-CHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHH
Confidence 999886 4789999999999999999986 46654331 157899988776543
No 38
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.84 E-value=6.8e-20 Score=166.10 Aligned_cols=224 Identities=14% Similarity=0.135 Sum_probs=184.7
Q ss_pred HHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccC-CChHHHHHHHHHHHhhCCCCc
Q 044293 5 RVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKS-SSPIIRTLSLSILLNLSLNPD 83 (236)
Q Consensus 5 ~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~ 83 (236)
.+.+..+.++++|.+++.+.+..|++.|..++.+ ++.|+.+++..|.++.|+.++.+ .+..+.-.++.++.||+..++
T Consensus 331 si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~-~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~ 409 (778)
T 3opb_A 331 NLKQLSEIFINAISRRIVPKVEMSVEALAYLSLK-ASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPE 409 (778)
T ss_dssp CHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTS-SHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCC
T ss_pred cHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCC-HHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCc
Confidence 3456788899999888877899999999999987 67899999987779999999985 677888999999999987433
Q ss_pred ---------------------------------------hhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccc
Q 044293 84 ---------------------------------------LKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLD 124 (236)
Q Consensus 84 ---------------------------------------~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~ 124 (236)
++..+.+.|++|+|+.+++++ ++.+++.|+++|.+++.++
T Consensus 410 ~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~-s~~~re~A~~aL~nLS~d~ 488 (778)
T 3opb_A 410 EXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNL-SPNCKQQVVRIIYNITRSK 488 (778)
T ss_dssp CCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGS-CHHHHHHHHHHHHHHHTSG
T ss_pred ccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCH
Confidence 345667899999999999998 8999999999999999999
Q ss_pred hhhhhhcccCcHHHHHHhhcCCCcH---HHHHHHHHHHHHhcCCCChHHHHH---hCcHHHHHHHhcC-CChh-------
Q 044293 125 KNKARFGVAGTVQVLVKAVSAPSNP---AGHHLLSSLAELVQFHGNSTLAVR---AGAVSELIHLIGS-TEAE------- 190 (236)
Q Consensus 125 ~~~~~i~~~g~i~~Lv~lL~~~~~~---~~~~a~~aL~~L~~~~~~~~~~~~---~g~i~~lv~ll~~-~~~~------- 190 (236)
++|..+.+.|++++|+.++.+++.. .+..|+.+|.+++.+.+....+-. .|++|+|++||.. ....
T Consensus 489 ~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~ 568 (778)
T 3opb_A 489 NFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHND 568 (778)
T ss_dssp GGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---C
T ss_pred HHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCccccccccc
Confidence 9999999999999999999987644 789999999999976654443311 4999999999983 2111
Q ss_pred ----hH-HHHHHHHHHHHcCCh-----hhHHHHHhc-CCcHHHHHHHhhCCc
Q 044293 191 ----DL-AGTSLAVLNLLARFD-----EGMIALTKT-DQIVSLMVDVLKGRS 231 (236)
Q Consensus 191 ----~~-~~~a~~~L~~l~~~~-----~~~~~i~~~-g~~i~~lv~~l~~~~ 231 (236)
.+ ...|+.+|.||+..+ +.|..++++ |+ ++.+.+++.+.+
T Consensus 569 ~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga-~~~L~~LL~s~n 619 (778)
T 3opb_A 569 EQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVY-WSTIENLMLDEN 619 (778)
T ss_dssp CCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHH-HHHHHHGGGCSS
T ss_pred ccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCH-HHHHHHHHhCCC
Confidence 12 468999999999876 458888886 76 899999887654
No 39
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.62 E-value=6.4e-14 Score=124.43 Aligned_cols=210 Identities=15% Similarity=0.142 Sum_probs=174.2
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChH-HHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchh
Q 044293 7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQ-YRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLK 85 (236)
Q Consensus 7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~ 85 (236)
++.|+.|+++|++++-.+|.+++..|..++..+++ ++++|...+++|+.|+.+|+.....+|..++.+|.+++.+..+.
T Consensus 121 ~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~i 200 (651)
T 3grl_A 121 QENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAI 200 (651)
T ss_dssp THHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHH
T ss_pred CccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHH
Confidence 57899999999999999999999999999988877 89999988899999999999989999999999999999998875
Q ss_pred HHhh-hcccHHHHHHHHhccC---CHHHHHHHHHHHHHhcccc-hhhhhhcccCcHHHHHHhhcCCCc------HHHHH-
Q 044293 86 QSLA-SMETIYRLNWIIQSSS---SQETVKLASSLICSLAMLD-KNKARFGVAGTVQVLVKAVSAPSN------PAGHH- 153 (236)
Q Consensus 86 ~~i~-~~g~i~~L~~lL~~~~---~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~------~~~~~- 153 (236)
+.++ -.|+.++|+++++... --.+...|+.+|.+|.... .|+..+.+.|+++.|..++..+.. ....+
T Consensus 201 QklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~ 280 (651)
T 3grl_A 201 QKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNL 280 (651)
T ss_dssp HHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHH
Confidence 5555 6799999999998642 2368889999999998876 688889999999999999975432 23344
Q ss_pred --HHHHHHHHhcCC-------CChHHHHHhCcHHHHHHHhcCCC-hhhHHHHHHHHHHHHcC-ChhhHHHHHhc
Q 044293 154 --LLSSLAELVQFH-------GNSTLAVRAGAVSELIHLIGSTE-AEDLAGTSLAVLNLLAR-FDEGMIALTKT 216 (236)
Q Consensus 154 --a~~aL~~L~~~~-------~~~~~~~~~g~i~~lv~ll~~~~-~~~~~~~a~~~L~~l~~-~~~~~~~i~~~ 216 (236)
++.++.-|+... .|++.+.+.|+++.+++++.... ...++..|+.++..+.+ ++.+++.|.+.
T Consensus 281 ~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~ 354 (651)
T 3grl_A 281 HLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASV 354 (651)
T ss_dssp HHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhc
Confidence 556666666542 35678899999999999997642 35688899999998875 67899998764
No 40
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.61 E-value=2.3e-14 Score=127.28 Aligned_cols=219 Identities=16% Similarity=0.154 Sum_probs=178.6
Q ss_pred HHHhHHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCC--ChHHHHHHHHHHHhhCC-
Q 044293 5 RVRETINNCVSRSQSD-SYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSS--SPIIRTLSLSILLNLSL- 80 (236)
Q Consensus 5 ~~~~~i~~lv~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~l~~- 80 (236)
...++|+.|.+++++. -.+.|+.|+..|+.++++ .+..++. ++++.|+..|+.+ |.++.+.++.+|.++-.
T Consensus 18 s~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~---y~~~Vg~--~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~ 92 (651)
T 3grl_A 18 TEAETIQKLCDRVASSTLLDDRRNAVRALKSLSKK---YRLEVGI--QAMEHLIHVLQTDRSDSEIIGYALDTLYNIISN 92 (651)
T ss_dssp CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT---TTTHHHH--HTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCC
T ss_pred ChhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHH---hHHHhhh--hhHHHHHHHHhcccccHHHHHHHHHHHHHHhCC
Confidence 4578999999999754 478899999999999875 5666775 5799999999764 77888889999987533
Q ss_pred CCch-----------------hHHhh-hcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccc--hhhhhhcc-cCcHHHH
Q 044293 81 NPDL-----------------KQSLA-SMETIYRLNWIIQSSSSQETVKLASSLICSLAMLD--KNKARFGV-AGTVQVL 139 (236)
Q Consensus 81 ~~~~-----------------~~~i~-~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~--~~~~~i~~-~g~i~~L 139 (236)
+++. .+.+. +.+.|+.|+.+|++. +..++.++...|..|+... .++..|.. .++++.|
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~-df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~L 171 (651)
T 3grl_A 93 DEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEF-DFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRL 171 (651)
T ss_dssp C--------------CHHHHHHHHHHHSTHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHH
T ss_pred CCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCc-cHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHH
Confidence 3221 11333 678999999999988 8999999999999998765 35677774 7999999
Q ss_pred HHhhcCCCcHHHHHHHHHHHHHhcCCCChHHHHH-hCcHHHHHHHhcCCC---hhhHHHHHHHHHHHHcC-ChhhHHHHH
Q 044293 140 VKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVR-AGAVSELIHLIGSTE---AEDLAGTSLAVLNLLAR-FDEGMIALT 214 (236)
Q Consensus 140 v~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~-~g~i~~lv~ll~~~~---~~~~~~~a~~~L~~l~~-~~~~~~~i~ 214 (236)
+.+|.+.+..++..++..|.+|+.+..+.+.++. .|+++.|++++.... ...+.+.|+.+|.||.. ++.++.-|+
T Consensus 172 v~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~Fr 251 (651)
T 3grl_A 172 MDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFK 251 (651)
T ss_dssp HGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999999989999999999999998877666655 699999999997632 23577999999999986 668999999
Q ss_pred hcCCcHHHHHHHhhCC
Q 044293 215 KTDQIVSLMVDVLKGR 230 (236)
Q Consensus 215 ~~g~~i~~lv~~l~~~ 230 (236)
+.|+ ++.|..+++.+
T Consensus 252 Et~~-i~~L~~LL~~~ 266 (651)
T 3grl_A 252 EGSY-IQRMKPWFEVG 266 (651)
T ss_dssp HTTC-GGGGGGGGCCC
T ss_pred HcCC-HHHHHHHhCCC
Confidence 9987 89999988643
No 41
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.43 E-value=3.1e-11 Score=94.16 Aligned_cols=155 Identities=17% Similarity=0.142 Sum_probs=130.0
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhH
Q 044293 7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQ 86 (236)
Q Consensus 7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~ 86 (236)
++.++.|+..|+++++.++..|+..|..+.. . +.++.|+.+|.++++.++..++.+|..+..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~-~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------ 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------E-RAVEPLIKALKDEDAWVRRAAADALGQIGD------ 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------G-GGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------c-cHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence 5689999999999999999999999887642 2 679999999999999999999999988752
Q ss_pred HhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCC
Q 044293 87 SLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHG 166 (236)
Q Consensus 87 ~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~ 166 (236)
.+.++.|+..|++. ++.++..|+.+|..+.. .+.++.|+.++.++++.++..++.+|..+..
T Consensus 80 ----~~~~~~L~~~l~~~-~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--- 141 (211)
T 3ltm_A 80 ----ERAVEPLIKALKDE-DGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--- 141 (211)
T ss_dssp ----GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---
T ss_pred ----HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---
Confidence 46788999999888 89999999999988753 4578999999988898999999999988853
Q ss_pred ChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC
Q 044293 167 NSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR 205 (236)
Q Consensus 167 ~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~ 205 (236)
...++.|+.++.+.+ +.++..|+.+|..+..
T Consensus 142 -------~~~~~~L~~~l~d~~-~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 142 -------ERAVEPLIKALKDED-GWVRQSAADALGEIGG 172 (211)
T ss_dssp -------GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCS
T ss_pred -------HHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCc
Confidence 357888999997764 7788889988888753
No 42
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.40 E-value=5.7e-11 Score=91.89 Aligned_cols=154 Identities=17% Similarity=0.145 Sum_probs=132.1
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhH
Q 044293 7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQ 86 (236)
Q Consensus 7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~ 86 (236)
.+..+.+++.|+++++.++..|+..|..+.. . +.++.|+.+|.++++.++..++.+|..+..
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~-~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------ 74 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------E-RAVEPLIKALKDEDAWVRRAAADALGQIGD------ 74 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------G-GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------h-hHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence 6788999999999999999999999987642 2 579999999999999999999999987642
Q ss_pred HhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCC
Q 044293 87 SLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHG 166 (236)
Q Consensus 87 ~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~ 166 (236)
...++.|+..|++. ++.++..|+.+|..+.. ...++.|+.++.++++.++..++++|..+..
T Consensus 75 ----~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--- 136 (201)
T 3ltj_A 75 ----ERAVEPLIKALKDE-DGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--- 136 (201)
T ss_dssp ----GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC---
T ss_pred ----HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---
Confidence 36789999999988 89999999999988643 4578999999999999999999999988853
Q ss_pred ChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHc
Q 044293 167 NSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLA 204 (236)
Q Consensus 167 ~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~ 204 (236)
.+.++.|+.++.+.+ +.++..|+.+|..+.
T Consensus 137 -------~~~~~~L~~~l~d~~-~~vr~~A~~aL~~~~ 166 (201)
T 3ltj_A 137 -------ERAVEPLIKALKDED-GWVRQSAADALGEIG 166 (201)
T ss_dssp -------GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHC
T ss_pred -------HHHHHHHHHHHcCCC-HHHHHHHHHHHHHhC
Confidence 467899999998874 788999999999883
No 43
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.34 E-value=1e-10 Score=91.19 Aligned_cols=158 Identities=12% Similarity=0.077 Sum_probs=131.2
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHH
Q 044293 8 ETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQS 87 (236)
Q Consensus 8 ~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~ 87 (236)
+.++.|+..|+++++.++..++++|..+.. . +.++.|+.+|.++++.++..++.+|..+..
T Consensus 50 ~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~-~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------- 110 (211)
T 3ltm_A 50 RAVEPLIKALKDEDAWVRRAAADALGQIGD-----------E-RAVEPLIKALKDEDGWVRQSAAVALGQIGD------- 110 (211)
T ss_dssp GGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------G-GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------
T ss_pred cHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-----------H-HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------
Confidence 678999999999999999999999988742 2 679999999999999999999999998753
Q ss_pred hhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCCC
Q 044293 88 LASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGN 167 (236)
Q Consensus 88 i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~ 167 (236)
.+.++.|+.++++. ++.++..|+.+|.++.. ...++.|..++.++++.++..++.+|..+..
T Consensus 111 ---~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---- 172 (211)
T 3ltm_A 111 ---ERAVEPLIKALKDE-DWFVRIAAAFALGEIGD----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG---- 172 (211)
T ss_dssp ---GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----
T ss_pred ---HHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----
Confidence 46889999999888 89999999999998743 3578999999999999999999999998853
Q ss_pred hHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChhh
Q 044293 168 STLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEG 209 (236)
Q Consensus 168 ~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~ 209 (236)
..+++.|..++++.+ +.++..|..+|.++...+.+
T Consensus 173 ------~~~~~~L~~~l~d~~-~~vr~~A~~aL~~~~~~~~~ 207 (211)
T 3ltm_A 173 ------ERVRAAMEKLAETGT-GFARKVAVNYLETHKSFNHH 207 (211)
T ss_dssp ------HHHHHHHHHHHHHCC-HHHHHHHHHHHHC-------
T ss_pred ------hhHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCCCCC
Confidence 457788999998874 78999999999988766543
No 44
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.27 E-value=3.5e-10 Score=87.41 Aligned_cols=153 Identities=12% Similarity=0.062 Sum_probs=130.8
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHH
Q 044293 8 ETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQS 87 (236)
Q Consensus 8 ~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~ 87 (236)
+.++.|++.|+++++.++..|+++|..+.. . +.++.|+.+|.++++.++..++.+|..+..
T Consensus 45 ~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~-----------~-~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------- 105 (201)
T 3ltj_A 45 RAVEPLIKALKDEDAWVRRAAADALGQIGD-----------E-RAVEPLIKALKDEDGWVRQSAAVALGQIGD------- 105 (201)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------G-GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-----------H-HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------
Confidence 678999999999999999999999987642 2 578999999999999999999999998643
Q ss_pred hhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCCC
Q 044293 88 LASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGN 167 (236)
Q Consensus 88 i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~ 167 (236)
...++.|+.++++. ++.++..|+.+|..+.. .+.++.|+.++.++++.++..|+.+|..+..
T Consensus 106 ---~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~---- 167 (201)
T 3ltj_A 106 ---ERAVEPLIKALKDE-DWFVRIAAAFALGEIGD----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG---- 167 (201)
T ss_dssp ---GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHTC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----
T ss_pred ---HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----
Confidence 45889999999888 89999999999988743 4678999999999999999999999998842
Q ss_pred hHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHc
Q 044293 168 STLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLA 204 (236)
Q Consensus 168 ~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~ 204 (236)
..+++.|..++.+.+ +.++..|..+|..+.
T Consensus 168 ------~~~~~~L~~~l~d~~-~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 168 ------ERVRAAMEKLAETGT-GFARKVAVNYLETHK 197 (201)
T ss_dssp ------HHHHHHHHHHHHHCC-HHHHHHHHHHHHHCC
T ss_pred ------hhHHHHHHHHHhCCC-HHHHHHHHHHHHHHH
Confidence 347889999998874 789999999998764
No 45
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.27 E-value=3.4e-10 Score=92.05 Aligned_cols=187 Identities=10% Similarity=0.086 Sum_probs=112.6
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhH
Q 044293 7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQ 86 (236)
Q Consensus 7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~ 86 (236)
...++.|+..|+++++.++..|++.|..+.. . +.++.|+.+|+++++.++..++.+|..+...+....
T Consensus 22 ~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~-~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~ 89 (280)
T 1oyz_A 22 KLNDDELFRLLDDHNSLKRISSARVLQLRGG-----------Q-DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED 89 (280)
T ss_dssp TSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------H-HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH
T ss_pred HhhHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------c-hHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccch
Confidence 3478999999999999999999999988752 2 568888888988888999999999988765433211
Q ss_pred HhhhcccHHHHHH-HHhccCCHHHHHHHHHHHHHhcccchh--------------------hh-------hhcccCcHHH
Q 044293 87 SLASMETIYRLNW-IIQSSSSQETVKLASSLICSLAMLDKN--------------------KA-------RFGVAGTVQV 138 (236)
Q Consensus 87 ~i~~~g~i~~L~~-lL~~~~~~~~~~~a~~~L~~Ls~~~~~--------------------~~-------~i~~~g~i~~ 138 (236)
..++.|.+ ++++. ++.++..++++|.++...... +. .++..++++.
T Consensus 90 -----~l~~~L~~~~~~d~-~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~~~~~ 163 (280)
T 1oyz_A 90 -----NVFNILNNMALNDK-SACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPL 163 (280)
T ss_dssp -----HHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---CCHHH
T ss_pred -----HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 12333332 23334 566777777776666421100 00 0011235555
Q ss_pred HHHhhcCCCcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChhhHHHHHhcCC
Q 044293 139 LVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGMIALTKTDQ 218 (236)
Q Consensus 139 Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~ 218 (236)
|+.++.++++.++..++++|..+.... ..+++.++.++.+.+ +.++..|+.+|..+. ...
T Consensus 164 L~~~l~d~~~~vr~~a~~aL~~~~~~~--------~~~~~~L~~~l~d~~-~~vR~~A~~aL~~~~----------~~~- 223 (280)
T 1oyz_A 164 LINLLKDPNGDVRNWAAFAININKYDN--------SDIRDCFVEMLQDKN-EEVRIEAIIGLSYRK----------DKR- 223 (280)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTCCC--------HHHHHHHHHHTTCSC-HHHHHHHHHHHHHTT----------CGG-
T ss_pred HHHHHcCCCHHHHHHHHHHHHhhccCc--------HHHHHHHHHHhcCCC-HHHHHHHHHHHHHhC----------CHh-
Confidence 555555555555555555555543110 134566666666553 556666666666553 223
Q ss_pred cHHHHHHHhhCCc
Q 044293 219 IVSLMVDVLKGRS 231 (236)
Q Consensus 219 ~i~~lv~~l~~~~ 231 (236)
.++.|+..+++++
T Consensus 224 ~~~~L~~~l~d~~ 236 (280)
T 1oyz_A 224 VLSVLCDELKKNT 236 (280)
T ss_dssp GHHHHHHHHTSSS
T ss_pred hHHHHHHHhcCcc
Confidence 3677777776643
No 46
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.24 E-value=3.5e-11 Score=110.03 Aligned_cols=193 Identities=16% Similarity=0.125 Sum_probs=145.5
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHH-hhccCCChHHHHHHHHHHHhhCCCC--ch
Q 044293 8 ETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLL-GLSKSSSPIIRTLSLSILLNLSLNP--DL 84 (236)
Q Consensus 8 ~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv-~lL~~~~~~~~~~a~~~L~~l~~~~--~~ 84 (236)
+.|.-+++.|++++++.|..|+.+|.+++. ++..++.+.+. |+|..++ .+|..++.++++.|+++|.||+.+. +.
T Consensus 34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~-~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~ 111 (684)
T 4gmo_A 34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLRE-QVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADF 111 (684)
T ss_dssp HTTHHHHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHT-THHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHc-CCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchH
Confidence 345667888999999999999999999997 58888888887 8887765 5788889999999999999999875 45
Q ss_pred hHHhhhcccHHHHHHHHhccC-------------C-------HHHHHHHHHHHHHhcccc-hhhhhhcccCcHHHHHHhh
Q 044293 85 KQSLASMETIYRLNWIIQSSS-------------S-------QETVKLASSLICSLAMLD-KNKARFGVAGTVQVLVKAV 143 (236)
Q Consensus 85 ~~~i~~~g~i~~L~~lL~~~~-------------~-------~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL 143 (236)
+..+.+.|++++|..++++.. . .++..+++.+|++||... +....+...++++.|+..|
T Consensus 112 ~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L 191 (684)
T 4gmo_A 112 CVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRL 191 (684)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHH
Confidence 788889999999999986420 0 134456888999998755 4455677789999999998
Q ss_pred cCC---CcHHHHHHHHHHHHHhcCC-CChHHHHHhCcHH---HHHHHhcCCChhhHHHHHHHHHHHHc
Q 044293 144 SAP---SNPAGHHLLSSLAELVQFH-GNSTLAVRAGAVS---ELIHLIGSTEAEDLAGTSLAVLNLLA 204 (236)
Q Consensus 144 ~~~---~~~~~~~a~~aL~~L~~~~-~~~~~~~~~g~i~---~lv~ll~~~~~~~~~~~a~~~L~~l~ 204 (236)
.+. ...+...|+.+|+.++... +..+.+.+.|... .++.+.+..+ .....++.+|.|+.
T Consensus 192 ~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~--~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 192 ISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTD--PRAVMACGVLHNVF 257 (684)
T ss_dssp HHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSC--TTHHHHHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCc--HHHHHHHHHHHhHh
Confidence 543 3468899999999999854 3444555555433 3333333432 34457788888874
No 47
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.23 E-value=2.4e-11 Score=111.10 Aligned_cols=167 Identities=13% Similarity=0.063 Sum_probs=134.2
Q ss_pred CcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHH-HHhccCCHHHHHHHHHHHHHhcccc--hhh
Q 044293 51 GAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNW-IIQSSSSQETVKLASSLICSLAMLD--KNK 127 (236)
Q Consensus 51 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~-lL~~~~~~~~~~~a~~~L~~Ls~~~--~~~ 127 (236)
+.|.++++.|++++++.|..|+.+|.+++.++..+..+...|+|.+++. +|.+. +.+++..|+++|.||+.+. +.+
T Consensus 34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~-~~~Vr~~A~gaLrnL~~~~g~d~~ 112 (684)
T 4gmo_A 34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDN-NIDSRAAGWEILKVLAQEEEADFC 112 (684)
T ss_dssp HTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCS-CHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCC-CHHHHHHHHHHHHHHHhhcCchHH
Confidence 3466677889999999999999999999998888999988899888765 56655 8999999999999999764 677
Q ss_pred hhhcccCcHHHHHHhhcCCC---------------------cHHHHHHHHHHHHHhcC-CCChHHHHHhCcHHHHHHHhc
Q 044293 128 ARFGVAGTVQVLVKAVSAPS---------------------NPAGHHLLSSLAELVQF-HGNSTLAVRAGAVSELIHLIG 185 (236)
Q Consensus 128 ~~i~~~g~i~~Lv~lL~~~~---------------------~~~~~~a~~aL~~L~~~-~~~~~~~~~~g~i~~lv~ll~ 185 (236)
..+.+.|++++|..++.+.. .....+++.+|++||.+ .+....+...|.+|.++.+|.
T Consensus 113 ~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~ 192 (684)
T 4gmo_A 113 VHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLI 192 (684)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHH
Confidence 88889999999999986411 12335678889999974 455667778899999999985
Q ss_pred CC--ChhhHHHHHHHHHHHHcCC-hhhHHHHHhcCC
Q 044293 186 ST--EAEDLAGTSLAVLNLLARF-DEGMIALTKTDQ 218 (236)
Q Consensus 186 ~~--~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~g~ 218 (236)
+. ...++...|+.+|..++.+ ++..+.+.+.+.
T Consensus 193 ~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~ 228 (684)
T 4gmo_A 193 SADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQE 228 (684)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCS
T ss_pred hcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcch
Confidence 42 2357889999999999975 577777777664
No 48
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.20 E-value=1.1e-09 Score=88.96 Aligned_cols=180 Identities=11% Similarity=0.038 Sum_probs=125.4
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC-------------------hHHHH----HHHhc--------cCcHHHH
Q 044293 8 ETINNCVSRSQSDSYEDQQKALQTLASITRVS-------------------PQYRS----LLAQT--------DGAISTL 56 (236)
Q Consensus 8 ~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~-------------------~~~~~----~i~~~--------~g~i~~L 56 (236)
+.++.|+.+|+++++.++..|+++|..+.... +..|. .+... +..++.|
T Consensus 54 ~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L 133 (280)
T 1oyz_A 54 DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQS 133 (280)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccHHHHHHH
Confidence 46777777777777777777777776654221 11111 01100 1345555
Q ss_pred HhhccCCChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcH
Q 044293 57 LGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTV 136 (236)
Q Consensus 57 v~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i 136 (236)
+.+|+++++.++..++.+|.++.. .+.++.|+.++++. ++.++..|+++|..+... ...++
T Consensus 134 ~~~l~d~~~~vR~~a~~aL~~~~~----------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~~--------~~~~~ 194 (280)
T 1oyz_A 134 QITAFDKSTNVRRATAFAISVIND----------KATIPLLINLLKDP-NGDVRNWAAFAININKYD--------NSDIR 194 (280)
T ss_dssp HHHTTCSCHHHHHHHHHHHHTC-------------CCHHHHHHHHTCS-SHHHHHHHHHHHHHHTCC--------CHHHH
T ss_pred HHHhhCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHcCC-CHHHHHHHHHHHHhhccC--------cHHHH
Confidence 566666666666666666665432 35889999999887 889999999999887432 23678
Q ss_pred HHHHHhhcCCCcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChhhHHHHHhc
Q 044293 137 QVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGMIALTKT 216 (236)
Q Consensus 137 ~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~ 216 (236)
+.|+.++.++++.++..|+.+|..+. ...++|.++.++.+.+ ++..++.+|..+.. .
T Consensus 195 ~~L~~~l~d~~~~vR~~A~~aL~~~~----------~~~~~~~L~~~l~d~~---vr~~a~~aL~~i~~----------~ 251 (280)
T 1oyz_A 195 DCFVEMLQDKNEEVRIEAIIGLSYRK----------DKRVLSVLCDELKKNT---VYDDIIEAAGELGD----------K 251 (280)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHTT----------CGGGHHHHHHHHTSSS---CCHHHHHHHHHHCC----------G
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhC----------CHhhHHHHHHHhcCcc---HHHHHHHHHHhcCc----------h
Confidence 99999999999999999999998886 2468999999998753 67788888888754 1
Q ss_pred CCcHHHHHHHhhCC
Q 044293 217 DQIVSLMVDVLKGR 230 (236)
Q Consensus 217 g~~i~~lv~~l~~~ 230 (236)
. .++.|.++++..
T Consensus 252 ~-~~~~L~~~l~~~ 264 (280)
T 1oyz_A 252 T-LLPVLDTMLYKF 264 (280)
T ss_dssp G-GHHHHHHHHTTS
T ss_pred h-hhHHHHHHHhcC
Confidence 3 478999988653
No 49
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.99 E-value=1.8e-09 Score=100.88 Aligned_cols=217 Identities=11% Similarity=0.043 Sum_probs=152.7
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhH
Q 044293 7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQ 86 (236)
Q Consensus 7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~ 86 (236)
.+.++.++..+.+++++++..++++|..++...++.-....+ +.++.++..+++.++.++..|+.++..++.++..+.
T Consensus 214 ~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~--~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~ 291 (852)
T 4fdd_A 214 DSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH--NIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKD 291 (852)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH--HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH--HHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHH
Confidence 467788888888899999999999999999876543222222 578888888888899999999999999998765444
Q ss_pred Hhh--hcccHHHHHHHHh----------cc--C---------CHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhh
Q 044293 87 SLA--SMETIYRLNWIIQ----------SS--S---------SQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAV 143 (236)
Q Consensus 87 ~i~--~~g~i~~L~~lL~----------~~--~---------~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL 143 (236)
.+. -...+|.++..+. .+ + +..++..|+.+|..++.... ..+. ...++.+...+
T Consensus 292 ~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~--~~~~-~~l~~~l~~~l 368 (852)
T 4fdd_A 292 VLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR--DELL-PHILPLLKELL 368 (852)
T ss_dssp HHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG--GGGH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc--HHHH-HHHHHHHHHHh
Confidence 332 1256677776662 11 0 11257888889888886543 1222 35788888888
Q ss_pred cCCCcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChhh--HHHHHhcCCcHH
Q 044293 144 SAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEG--MIALTKTDQIVS 221 (236)
Q Consensus 144 ~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~--~~~i~~~g~~i~ 221 (236)
.+.+..++..|+++|..++........-.-.+++|.++..+++. ++.++..|+.++.+++..-.. ...+.. + +++
T Consensus 369 ~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~-~-ll~ 445 (852)
T 4fdd_A 369 FHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDK-KALVRSITCWTLSRYAHWVVSQPPDTYLK-P-LMT 445 (852)
T ss_dssp TCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHTHHHHHHSCTTTTHH-H-HHH
T ss_pred cCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHhccchHHHHHH-H-HHH
Confidence 88899999999999999997543221112356789999999887 478999999999998853211 111221 2 467
Q ss_pred HHHHHhhCCc
Q 044293 222 LMVDVLKGRS 231 (236)
Q Consensus 222 ~lv~~l~~~~ 231 (236)
.+++.+++.+
T Consensus 446 ~L~~~L~d~~ 455 (852)
T 4fdd_A 446 ELLKRILDSN 455 (852)
T ss_dssp HHHHHHTCSS
T ss_pred HHHHHHhCCC
Confidence 7777776544
No 50
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.93 E-value=2e-08 Score=90.27 Aligned_cols=189 Identities=11% Similarity=0.095 Sum_probs=140.9
Q ss_pred hHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCc
Q 044293 4 PRVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPD 83 (236)
Q Consensus 4 ~~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~ 83 (236)
+-.+..++.+.+.+.++++.+|..|+.++.++...+++. +... ++++.|..+|.++++.++..|+.+|..++.++.
T Consensus 117 ~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~-~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~ 192 (591)
T 2vgl_B 117 KITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQ-GFLDSLRDLIADSNPMVVANAVAALSEISESHP 192 (591)
T ss_dssp GGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHH-HHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---cccc-cHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCC
Confidence 445667788999999999999999999999998876553 2334 789999999999999999999999999988764
Q ss_pred hh-HHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHh
Q 044293 84 LK-QSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELV 162 (236)
Q Consensus 84 ~~-~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~ 162 (236)
.. ..-...+.++.|+..+... ++-.+.....+|..++..+... ....++.+...+++.++.++..|++++.++.
T Consensus 193 ~~~~~~l~~~~~~~Ll~~l~~~-~~~~q~~il~~l~~l~~~~~~~----~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~ 267 (591)
T 2vgl_B 193 NSNLLDLNPQNINKLLTALNEC-TEWGQIFILDCLSNYNPKDDRE----AQSICERVTPRLSHANSAVVLSAVKVLMKFL 267 (591)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHC-CHHHHHHHHHHHHTSCCCSHHH----HHHHHHHHTTCSCSSTTHHHHHHHHHHHHSC
T ss_pred CccchhccHHHHHHHHHcCCCC-CchHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHh
Confidence 32 1111345677888888777 7888888888888877543211 1457888888899999999999999999987
Q ss_pred c----CCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHc
Q 044293 163 Q----FHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLA 204 (236)
Q Consensus 163 ~----~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~ 204 (236)
. +++....+ -..+.+.|+.++. + ++.++-.++..|..+.
T Consensus 268 ~~~~~~~~~~~~~-~~~~~~~L~~L~~-~-d~~vr~~aL~~l~~i~ 310 (591)
T 2vgl_B 268 ELLPKDSDYYNML-LKKLAPPLVTLLS-G-EPEVQYVALRNINLIV 310 (591)
T ss_dssp CSCCBTTBSHHHH-HHHTHHHHHHHTT-S-CHHHHHHHHHHHHHHH
T ss_pred hccCCCHHHHHHH-HHHHHHHHHHHhc-C-CccHHHHHHHHHHHHH
Confidence 4 23333332 3455677777665 3 3677777777777765
No 51
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.92 E-value=1.6e-08 Score=94.36 Aligned_cols=218 Identities=14% Similarity=0.050 Sum_probs=150.8
Q ss_pred HHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchh
Q 044293 6 VRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLK 85 (236)
Q Consensus 6 ~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~ 85 (236)
....++.+++.++++++++|..|+++|..+....+....... ++.++.++.++.+++++++..++.+|..++......
T Consensus 172 ~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~--~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~ 249 (852)
T 4fdd_A 172 LNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHI--DSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDR 249 (852)
T ss_dssp HHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSH--HHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHH--HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHH
Confidence 355778888888889999999999999888765432211112 257888889898999999999999999987754321
Q ss_pred HHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcc--cCcHHHHHHhhc-----------C-------
Q 044293 86 QSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGV--AGTVQVLVKAVS-----------A------- 145 (236)
Q Consensus 86 ~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~--~g~i~~Lv~lL~-----------~------- 145 (236)
..-.-.+.++.++..+++. +++++..|+.++..++.....+..+.. ...+|.++..+. +
T Consensus 250 ~~~~l~~l~~~l~~~~~~~-~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~ 328 (852)
T 4fdd_A 250 LLPHMHNIVEYMLQRTQDQ-DENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGG 328 (852)
T ss_dssp HGGGHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHccCC-cHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCccccccc
Confidence 1111135788888888877 799999999999999876543433321 356777777772 2
Q ss_pred ----CCcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChhhH-HHHHhcCCcH
Q 044293 146 ----PSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGM-IALTKTDQIV 220 (236)
Q Consensus 146 ----~~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~-~~i~~~g~~i 220 (236)
.+..+++.+..+|..++..... .+ -..++|.+.+.+.+.+ ..+++.|+.+|.+++...... ..+. .+ ++
T Consensus 329 dd~~~~~~vr~~a~~~L~~la~~~~~--~~-~~~l~~~l~~~l~~~~-~~~R~aa~~alg~i~~~~~~~~~~~l-~~-~l 402 (852)
T 4fdd_A 329 DDTISDWNLRKCSAAALDVLANVYRD--EL-LPHILPLLKELLFHHE-WVVKESGILVLGAIAEGCMQGMIPYL-PE-LI 402 (852)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHGG--GG-HHHHHHHHHHHHTCSS-HHHHHHHHHHHHHTTTTTHHHHGGGH-HH-HH
T ss_pred ccccccchHHHHHHHHHHHHHHhccH--HH-HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhcchHHHHHHH-HH-HH
Confidence 1223577888899888864321 11 1246778888887764 788999999999999765322 2222 22 57
Q ss_pred HHHHHHhhCCcc
Q 044293 221 SLMVDVLKGRSM 232 (236)
Q Consensus 221 ~~lv~~l~~~~~ 232 (236)
+.++..+++.++
T Consensus 403 ~~l~~~l~d~~~ 414 (852)
T 4fdd_A 403 PHLIQCLSDKKA 414 (852)
T ss_dssp HHHHHHTTCSSH
T ss_pred HHHHHHcCCCCH
Confidence 888888876553
No 52
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.87 E-value=7.5e-08 Score=85.47 Aligned_cols=188 Identities=10% Similarity=0.048 Sum_probs=137.0
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhH
Q 044293 7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQ 86 (236)
Q Consensus 7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~ 86 (236)
...++.+...++++++.+|..|+.+|..++..-.. +.. .. ..+|.+..+++++++.+|..|+.+|..++..-...
T Consensus 163 ~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~--~~~-~~-~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~- 237 (588)
T 1b3u_A 163 AELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL--DNV-KS-EIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE- 237 (588)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH--HHH-HH-THHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH-
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcH--HhH-HH-HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH-
Confidence 45667777777888999999999999998865322 122 23 78999999999889999999999988876542211
Q ss_pred HhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCC-
Q 044293 87 SLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFH- 165 (236)
Q Consensus 87 ~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~- 165 (236)
......+|.+..++++. +..+|..++.+|..++...... ......++.+++++.+.++.++..|+.+|..++..-
T Consensus 238 -~~~~~~~~~l~~~~~d~-~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~ 313 (588)
T 1b3u_A 238 -DLEALVMPTLRQAAEDK-SWRVRYMVADKFTELQKAVGPE--ITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLS 313 (588)
T ss_dssp -HHHHHTHHHHHHHHTCS-SHHHHHHHHHTHHHHHHHHCHH--HHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSC
T ss_pred -HHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHHHhCcc--cchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhC
Confidence 12345778888888776 7899999999999887643211 123467899999999999999999999999998743
Q ss_pred -CChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHc
Q 044293 166 -GNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLA 204 (236)
Q Consensus 166 -~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~ 204 (236)
+.+........+|.+..++++.+ ..++..++.+|..++
T Consensus 314 ~~~~~~~~~~~l~p~l~~~l~d~~-~~vR~~a~~~l~~l~ 352 (588)
T 1b3u_A 314 ADCRENVIMSQILPCIKELVSDAN-QHVKSALASVIMGLS 352 (588)
T ss_dssp TTTHHHHHHHTHHHHHHHHHTCSC-HHHHHHHHTTGGGGH
T ss_pred hhhhhhHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHH
Confidence 22222334567788888887764 567777776666655
No 53
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.86 E-value=1.1e-08 Score=81.49 Aligned_cols=188 Identities=11% Similarity=0.127 Sum_probs=139.7
Q ss_pred chHHHhHHH-HHHHHhcCCCHHHHHHHHHHHHHHhcCChHHH-HHHHhccCcHHHHHhhcc-CCChHHHHHHHHHHHhhC
Q 044293 3 APRVRETIN-NCVSRSQSDSYEDQQKALQTLASITRVSPQYR-SLLAQTDGAISTLLGLSK-SSSPIIRTLSLSILLNLS 79 (236)
Q Consensus 3 ~~~~~~~i~-~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~-~~i~~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~l~ 79 (236)
+.++.+-++ .+.+.+.+.++..|..|+..|..+....+... ..+ ..+++.|...+. ..+..++..|+.++..++
T Consensus 9 ~~di~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~---~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la 85 (242)
T 2qk2_A 9 PVDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY---GALVSALKKVITKDSNVVLVAMAGKCLALLA 85 (242)
T ss_dssp CBCCGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC---HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred cccccccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH---HHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 334444444 47888889999999999999999887532211 111 145777788884 889999999999999998
Q ss_pred CCCchhHHhh--hcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHH
Q 044293 80 LNPDLKQSLA--SMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSS 157 (236)
Q Consensus 80 ~~~~~~~~i~--~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~a 157 (236)
..- +..+. -...+|.++..+.+. +..++..|..+|..+...... ...++.+...+.+.++.++..++..
T Consensus 86 ~~l--~~~~~~~~~~ilp~ll~~l~d~-~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~~~~vr~~~l~~ 156 (242)
T 2qk2_A 86 KGL--AKRFSNYASACVPSLLEKFKEK-KPNVVTALREAIDAIYASTSL------EAQQESIVESLSNKNPSVKSETALF 156 (242)
T ss_dssp HHH--GGGGHHHHHHHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHH--hhhHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCCChHHHHHHHHH
Confidence 532 22222 245889999999887 799999999999998775421 2468889999999999999999999
Q ss_pred HHHHhc-CC-C--ChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC
Q 044293 158 LAELVQ-FH-G--NSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR 205 (236)
Q Consensus 158 L~~L~~-~~-~--~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~ 205 (236)
|..+.. +. + ....+ ...+|.++.++.+.. ++++..|..++..++.
T Consensus 157 l~~~l~~~~~~~~~~~~l--~~l~p~l~~~l~D~~-~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 157 IARALTRTQPTALNKKLL--KLLTTSLVKTLNEPD-PTVRDSSAEALGTLIK 205 (242)
T ss_dssp HHHHHTTCCGGGCCHHHH--HHHHHHHHHHHTSSC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCccHHHH--HHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHH
Confidence 999544 32 2 22222 368899999998874 7899999999988774
No 54
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.76 E-value=9.3e-08 Score=85.91 Aligned_cols=206 Identities=14% Similarity=0.159 Sum_probs=142.5
Q ss_pred HHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCch
Q 044293 5 RVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDL 84 (236)
Q Consensus 5 ~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~ 84 (236)
++....+.+++.+++++.+.++-+...+..++..+++. .. -++..+.+-|+++++.+|..|+.+|+++.. ++
T Consensus 46 d~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~----~~--l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~-~~- 117 (591)
T 2vgl_B 46 DVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDM----AI--MAVNSFVKDCEDPNPLIRALAVRTMGCIRV-DK- 117 (591)
T ss_dssp CCGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHH----HH--TTHHHHGGGSSSSSHHHHHHHHHHHHTCCS-GG-
T ss_pred ChHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchH----HH--HHHHHHHHHcCCCCHHHHHHHHHHHHcCCh-HH-
Confidence 34456677777778888888887878887777644332 21 457778888888899999999999988762 22
Q ss_pred hHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcC
Q 044293 85 KQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQF 164 (236)
Q Consensus 85 ~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~ 164 (236)
+ ....++.+.+++.+. ++.+++.|+.++.++.... ...+.+.+.++.|..+|.+.++.++..|+.+|..++..
T Consensus 118 ---~-~~~l~~~l~~~L~d~-~~~VRk~A~~al~~i~~~~--p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~ 190 (591)
T 2vgl_B 118 ---I-TEYLCEPLRKCLKDE-DPYVRKTAAVCVAKLHDIN--AQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISES 190 (591)
T ss_dssp ---G-HHHHHHHHHHHSSCS-CHHHHHHHHHHHHHHHHSS--CCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTS
T ss_pred ---H-HHHHHHHHHHHcCCC-ChHHHHHHHHHHHHHHhhC--hhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhh
Confidence 1 233567889999887 8999999999999997733 22333368899999999999999999999999999985
Q ss_pred CC-C---------hHHHHH----------------------------hCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC-
Q 044293 165 HG-N---------STLAVR----------------------------AGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR- 205 (236)
Q Consensus 165 ~~-~---------~~~~~~----------------------------~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~- 205 (236)
.. . -..++. ...++.+..++++. ++.+.-.|++++..+..
T Consensus 191 ~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~-~~~V~~ea~~~i~~l~~~ 269 (591)
T 2vgl_B 191 HPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHA-NSAVVLSAVKVLMKFLEL 269 (591)
T ss_dssp CCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSS-TTHHHHHHHHHHHHSCCS
T ss_pred CCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHhhc
Confidence 43 2 111111 12344444455554 35677788888888763
Q ss_pred ---ChhhHHHHHhcCCcHHHHHHHhh
Q 044293 206 ---FDEGMIALTKTDQIVSLMVDVLK 228 (236)
Q Consensus 206 ---~~~~~~~i~~~g~~i~~lv~~l~ 228 (236)
+++....+... +.+.|+.++.
T Consensus 270 ~~~~~~~~~~~~~~--~~~~L~~L~~ 293 (591)
T 2vgl_B 270 LPKDSDYYNMLLKK--LAPPLVTLLS 293 (591)
T ss_dssp CCBTTBSHHHHHHH--THHHHHHHTT
T ss_pred cCCCHHHHHHHHHH--HHHHHHHHhc
Confidence 34555555443 3567776554
No 55
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.73 E-value=2.1e-09 Score=77.62 Aligned_cols=122 Identities=12% Similarity=0.005 Sum_probs=91.3
Q ss_pred HHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCch
Q 044293 5 RVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDL 84 (236)
Q Consensus 5 ~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~ 84 (236)
.-.+.++.++..|+++++.+|..|++.|..+.. ..++.|+.+|+++++.+|..++.+|.++..
T Consensus 9 ~~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~-------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~---- 71 (131)
T 1te4_A 9 HHSSGLVPRGSHMADENKWVRRDVSTALSRMGD-------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD---- 71 (131)
T ss_dssp ------------CCSSCCCSSSSCCSSTTSCSS-------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS----
T ss_pred cccccHHHHHHHhcCCCHHHHHHHHHHHHHhCc-------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC----
Confidence 346788899999999998899888777765421 236889999999999999999999988753
Q ss_pred hHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHH
Q 044293 85 KQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAE 160 (236)
Q Consensus 85 ~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~ 160 (236)
...++.|+..|++. ++.++..|+++|.++. ...+++.|+.++.+.++.++..|+.+|..
T Consensus 72 ------~~a~~~L~~~L~d~-~~~VR~~A~~aL~~~~----------~~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 ------ERAVEPLIKLLEDD-SGFVRSGAARSLEQIG----------GERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp ------HHHHHHHHHHHHHC-CTHHHHHHHHHHHHHC----------SHHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred ------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 34689999999887 8999999999999875 24568999999998888999999988754
No 56
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.68 E-value=2.3e-07 Score=82.30 Aligned_cols=185 Identities=11% Similarity=0.041 Sum_probs=117.9
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHH
Q 044293 8 ETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQS 87 (236)
Q Consensus 8 ~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~ 87 (236)
..+|.+...+++.++.++..++..|..++..-. .. +... ..+|.+..+|..++..+|+.|+.++..++..-...
T Consensus 402 ~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~--~~-~~~~-~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~-- 475 (588)
T 1b3u_A 402 SLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLG--VE-FFDE-KLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE-- 475 (588)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHC--GG-GCCH-HHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH--
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcC--HH-HHHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch--
Confidence 345555555555555566656555555543200 00 1111 45677777777777788888888887765432211
Q ss_pred hhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCCC
Q 044293 88 LASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGN 167 (236)
Q Consensus 88 i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~ 167 (236)
......+|.|..++++. +..++..++.++..++..-... ......+|.|++.+.++++.++..++++|..++..-..
T Consensus 476 ~~~~~llp~l~~~~~~~-~~~~R~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~ 552 (588)
T 1b3u_A 476 WAHATIIPKVLAMSGDP-NYLHRMTTLFCINVLSEVCGQD--ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN 552 (588)
T ss_dssp HHHHHTHHHHHHTTTCS-CHHHHHHHHHHHHHHHHHHHHH--HHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCH
T ss_pred hHHHHHHHHHHHHhhCC-CHHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhch
Confidence 12345677777766665 7888888888888877643211 12246788888888888888888999999888864321
Q ss_pred hHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHc
Q 044293 168 STLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLA 204 (236)
Q Consensus 168 ~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~ 204 (236)
......++|.+..++.+.+ .+++..|..+|..+.
T Consensus 553 --~~~~~~~~p~l~~l~~d~d-~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 553 --STLQSEVKPILEKLTQDQD-VDVKYFAQEALTVLS 586 (588)
T ss_dssp --HHHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHTT
T ss_pred --hhhHHHHHHHHHHHcCCCc-hhHHHHHHHHHHHhh
Confidence 2233566777777777664 788888888887654
No 57
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.64 E-value=2.5e-06 Score=66.58 Aligned_cols=187 Identities=12% Similarity=0.122 Sum_probs=143.6
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC-hHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCC-Cch
Q 044293 7 RETINNCVSRSQSDSYEDQQKALQTLASITRVS-PQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLN-PDL 84 (236)
Q Consensus 7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-~~~ 84 (236)
.+.+..+..+|...|+.++..++.+|..+.+.- ...+....+ ..++.++.++.+.+..+.-.|+.+|..+-.+ |-.
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e--~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~ 109 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLE--RHLDVFINALSQENEKVTIKALRALGYLVKDVPMG 109 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH--HHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBC
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHH--HHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCC
Confidence 457788899999999999999999999988762 334555555 5899999999999999999999999876544 333
Q ss_pred hHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcC
Q 044293 85 KQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQF 164 (236)
Q Consensus 85 ~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~ 164 (236)
...+.. .+..|.++++++ +.-.+..|+..+..+..... ..+.+..+.+++.+.+.+++..++++|.+++..
T Consensus 110 ~~~y~K--l~~aL~dlik~~-~~il~~eaae~Lgklkv~~~------~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~ 180 (265)
T 3b2a_A 110 SKTFLK--AAKTLVSLLESP-DDMMRIETIDVLSKLQPLED------SKLVRTYINELVVSPDLYTKVAGFCLFLNMLNS 180 (265)
T ss_dssp HHHHHH--HHHHHHHHTTSC-CHHHHHHHHHHHHHCCBSCC------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGG
T ss_pred HHHHHH--HHHHHHHHhcCC-CchHHHHHHHHhCcCCcccc------hHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcc
Confidence 333322 456788888887 88999999999999822221 246688899999889999999999999999985
Q ss_pred CCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCCh
Q 044293 165 HGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFD 207 (236)
Q Consensus 165 ~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~ 207 (236)
.+....+ .+++.-+-++|++.| +.+++.|+.+|..+.+.|
T Consensus 181 S~D~~i~--~~I~~eI~elL~~eD-~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 181 SADSGHL--TLILDEIPSLLQNDN-EFIVELALDVLEKALSFP 220 (265)
T ss_dssp CSSCCCG--GGTTTTHHHHHTCSC-HHHHHHHHHHHHHHTTSC
T ss_pred cCCHHHH--HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCc
Confidence 4332221 244555677888874 789999999999988765
No 58
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.63 E-value=6.7e-07 Score=76.93 Aligned_cols=217 Identities=9% Similarity=0.027 Sum_probs=144.2
Q ss_pred HhHHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCChHHH-HHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCc
Q 044293 7 RETINNCVSRSQSD--SYEDQQKALQTLASITRVSPQYR-SLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPD 83 (236)
Q Consensus 7 ~~~i~~lv~~L~~~--~~~~~~~a~~~L~~l~~~~~~~~-~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~ 83 (236)
...++.++..++++ ++.+|..|++++..+...-.++- ...... -.++.+...+.+++++++..++.++..++....
T Consensus 171 ~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~ 249 (462)
T 1ibr_B 171 NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERH-FIMQVVCEATQCPDTRVRVAALQNLVKIMSLYY 249 (462)
T ss_dssp HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 55777888888877 78999999999988654311111 111111 246777777888889999999999998775432
Q ss_pred h--hHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchh------------------hhhhcc---cCcHHHHH
Q 044293 84 L--KQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKN------------------KARFGV---AGTVQVLV 140 (236)
Q Consensus 84 ~--~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~------------------~~~i~~---~g~i~~Lv 140 (236)
. +..+ ..+.++.++..++.. +++++..|+..+..++..... ...+.+ ...+|.++
T Consensus 250 ~~~~~~~-~~~l~~~~~~~~~~~-~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~ 327 (462)
T 1ibr_B 250 QYMETYM-GPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILT 327 (462)
T ss_dssp GGCTTTT-TTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHH
Confidence 2 1211 116788888888776 799999999998888764310 011111 34567777
Q ss_pred HhhcCC-------CcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChh--hHH
Q 044293 141 KAVSAP-------SNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDE--GMI 211 (236)
Q Consensus 141 ~lL~~~-------~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~--~~~ 211 (236)
+.+... +...+..|+.+|..++..-.. .+ -..++|.+...+.+.+ ..+++.|+.+|..++.... .-.
T Consensus 328 ~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~--~~-~~~~~~~l~~~l~~~~-~~~r~aal~~l~~l~~~~~~~~~~ 403 (462)
T 1ibr_B 328 QTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DI-VPHVLPFIKEHIKNPD-WRYRDAAVMAFGCILEGPEPSQLK 403 (462)
T ss_dssp HHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--TH-HHHHHHHHHHHTTCSS-HHHHHHHHHHHHHTSSSSCTTTTC
T ss_pred HHHHhcccccccccchHHHHHHHHHHHHHHhccH--HH-HHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHhcCCcHHHHH
Confidence 777542 335788999999999875432 22 2356778888887764 6788999999999997532 111
Q ss_pred HHHhcCCcHHHHHHHhhCCcc
Q 044293 212 ALTKTDQIVSLMVDVLKGRSM 232 (236)
Q Consensus 212 ~i~~~g~~i~~lv~~l~~~~~ 232 (236)
... ..++|.++..+++.++
T Consensus 404 ~~l--~~~~~~l~~~l~d~~~ 422 (462)
T 1ibr_B 404 PLV--IQAMPTLIELMKDPSV 422 (462)
T ss_dssp TTT--TTHHHHHHHGGGCSCH
T ss_pred HHH--HHHHHHHHHHhcCCCH
Confidence 122 2368888888876554
No 59
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.60 E-value=8.6e-09 Score=74.32 Aligned_cols=119 Identities=12% Similarity=0.016 Sum_probs=89.8
Q ss_pred CcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhh
Q 044293 51 GAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARF 130 (236)
Q Consensus 51 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i 130 (236)
..++.++.+|+++++.+|..|+.+|..+.. ..++.|+..|++. ++.++..|+++|.++..
T Consensus 12 ~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~L~~~L~d~-~~~vR~~A~~aL~~~~~-------- 71 (131)
T 1te4_A 12 SGLVPRGSHMADENKWVRRDVSTALSRMGD-----------EAFEPLLESLSNE-DWRIRGAAAWIIGNFQD-------- 71 (131)
T ss_dssp ---------CCSSCCCSSSSCCSSTTSCSS-----------TTHHHHHHGGGCS-CHHHHHHHHHHHGGGCS--------
T ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHhCc-----------hHHHHHHHHHcCC-CHHHHHHHHHHHHhcCC--------
Confidence 678999999999999888888877766532 1268999999987 89999999999988753
Q ss_pred cccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHH
Q 044293 131 GVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNL 202 (236)
Q Consensus 131 ~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~ 202 (236)
...++.|+..+.++++.++..|+++|..+.. ..+++.|+.++++.+ +.++..|+.+|..
T Consensus 72 --~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~-~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 --ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGT-GFARKVAVNYLET 130 (131)
T ss_dssp --HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCC-THHHHHHHHHGGG
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCC-HHHHHHHHHHHHh
Confidence 3468999999999999999999999998862 356899999998764 6788888887754
No 60
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.56 E-value=4.3e-07 Score=72.76 Aligned_cols=189 Identities=7% Similarity=0.057 Sum_probs=133.8
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHH-HhcCChHHHHHHHhccCcHHHHHhhc-cCCChHHHHHHHHHHHhhCCCCchh-HHh
Q 044293 12 NCVSRSQSDSYEDQQKALQTLAS-ITRVSPQYRSLLAQTDGAISTLLGLS-KSSSPIIRTLSLSILLNLSLNPDLK-QSL 88 (236)
Q Consensus 12 ~lv~~L~~~~~~~~~~a~~~L~~-l~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~~a~~~L~~l~~~~~~~-~~i 88 (236)
.+.+.+++.++..|..|+..|.. +..+.+.....-......+..|...+ +..+..++..|+.+|..++..= + ..+
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l--~~~~f 97 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKL--KTPGF 97 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHH--CTTTS
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhc--ccccc
Confidence 35667789999999999999999 87543322100001013566777777 5778899999999999998421 2 222
Q ss_pred h---hcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhc--ccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhc
Q 044293 89 A---SMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFG--VAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQ 163 (236)
Q Consensus 89 ~---~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~--~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~ 163 (236)
. -.-.+|.++..++.. ...++..+..+|..++..-+. .... -...++.|+..|.+.++.++..++.+|..+..
T Consensus 98 ~~~y~~~llp~ll~~l~dk-k~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~ 175 (249)
T 2qk1_A 98 SKDYVSLVFTPLLDRTKEK-KPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMK 175 (249)
T ss_dssp CHHHHHHHHHHHHHGGGCC-CHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 2 134789999999877 688988888888887764321 1111 12578889999999999999999999988886
Q ss_pred CCCC-hHHH--HH-hCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC
Q 044293 164 FHGN-STLA--VR-AGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR 205 (236)
Q Consensus 164 ~~~~-~~~~--~~-~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~ 205 (236)
.... ...+ .- ...+|.+.+++.+++ +++++.|..+|..++.
T Consensus 176 ~~~~~~~~l~~~l~~~iip~l~~~l~D~~-~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 176 EEKDGYSTLQRYLKDEVVPIVIQIVNDTQ-PAIRTIGFESFAILIK 220 (249)
T ss_dssp HCCSCSHHHHHHHTTTHHHHHHHHHTCSS-HHHHHHHHHHHHHHHH
T ss_pred HcCCcchhHHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHH
Confidence 4332 1332 22 588999999998884 7899999988888763
No 61
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.56 E-value=7.5e-07 Score=76.60 Aligned_cols=195 Identities=11% Similarity=0.041 Sum_probs=132.5
Q ss_pred HhHHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCC-hHHHHHHHhccCcHHHHHhhccCC--ChHHHHHHHHHHHhhCCC
Q 044293 7 RETINNCVSRSQSD--SYEDQQKALQTLASITRVS-PQYRSLLAQTDGAISTLLGLSKSS--SPIIRTLSLSILLNLSLN 81 (236)
Q Consensus 7 ~~~i~~lv~~L~~~--~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~l~~~ 81 (236)
.+.++.+++.++++ ++..+..++.+|..++... +..-..... .+++.++..+.+. ++.+|..|+.++.++...
T Consensus 127 ~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~--~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~ 204 (462)
T 1ibr_B 127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSN--EILTAIIQGMRKEEPSNNVKLAATNALLNSLEF 204 (462)
T ss_dssp TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHH--HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHH--HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 56889999999888 8899999999999998642 221122222 5788888889887 789999999999986543
Q ss_pred Cc-hh-HHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchh--hhhhcccCcHHHHHHhhcCCCcHHHHHHHHH
Q 044293 82 PD-LK-QSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKN--KARFGVAGTVQVLVKAVSAPSNPAGHHLLSS 157 (236)
Q Consensus 82 ~~-~~-~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~--~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~a 157 (236)
-. +- ......-.++.+...+.+. +.+++..++.+|..++..... ...+ ..+.++.++..+.+.++.++..++.+
T Consensus 205 ~~~~~~~~~~~~~l~~~l~~~~~~~-~~~vr~~~~~~l~~l~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~v~~~a~~~ 282 (462)
T 1ibr_B 205 TKANFDKESERHFIMQVVCEATQCP-DTRVRVAALQNLVKIMSLYYQYMETYM-GPALFAITIEAMKSDIDEVALQGIEF 282 (462)
T ss_dssp THHHHTSHHHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCGGGCTTTT-TTTHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHhhhhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 11 10 0111112466666666666 899999999999988765421 1112 12788888888888888999999999
Q ss_pred HHHHhcCC------------------CChHHHHH---hCcHHHHHHHhcCC------ChhhHHHHHHHHHHHHcC
Q 044293 158 LAELVQFH------------------GNSTLAVR---AGAVSELIHLIGST------EAEDLAGTSLAVLNLLAR 205 (236)
Q Consensus 158 L~~L~~~~------------------~~~~~~~~---~g~i~~lv~ll~~~------~~~~~~~~a~~~L~~l~~ 205 (236)
+..++... .....+++ ...+|.+++.+... +...++..|..+|..++.
T Consensus 283 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~ 357 (462)
T 1ibr_B 283 WSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLAT 357 (462)
T ss_dssp HHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHH
Confidence 98887642 11111111 34677788888542 123567788888887764
No 62
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.51 E-value=2.8e-06 Score=67.38 Aligned_cols=148 Identities=12% Similarity=0.092 Sum_probs=115.0
Q ss_pred HHHhHHHHHHHHh-cCCCHHHHHHHHHHHHHHhcC-ChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCC
Q 044293 5 RVRETINNCVSRS-QSDSYEDQQKALQTLASITRV-SPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNP 82 (236)
Q Consensus 5 ~~~~~i~~lv~~L-~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~ 82 (236)
++.+.++.|...+ ++.+..++..|+.++..++.. .+.... ..+ .++|.++..+....+.+|..+..+|.++....
T Consensus 53 ~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~-~~~--~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~ 129 (242)
T 2qk2_A 53 EYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSN-YAS--ACVPSLLEKFKEKKPNVVTALREAIDAIYAST 129 (242)
T ss_dssp CCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHH-HHH--HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHH-HHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC
Confidence 3457788888889 489999999999999999864 122223 333 48999999999999999999999999887654
Q ss_pred chhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchh----hhhhcccCcHHHHHHhhcCCCcHHHHHHHHHH
Q 044293 83 DLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKN----KARFGVAGTVQVLVKAVSAPSNPAGHHLLSSL 158 (236)
Q Consensus 83 ~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~----~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL 158 (236)
.. ...++.+...+++. ++.++..++..|..+...... ...+ ...+|.|+..+.+.+..++..|..++
T Consensus 130 ~~------~~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~~~~~~~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l 200 (242)
T 2qk2_A 130 SL------EAQQESIVESLSNK-NPSVKSETALFIARALTRTQPTALNKKLL--KLLTTSLVKTLNEPDPTVRDSSAEAL 200 (242)
T ss_dssp CH------HHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCCGGGCCHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred CH------HHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCCCccHHHH--HHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 31 24678888899887 899999999999986443211 1222 47899999999999999999999999
Q ss_pred HHHhcC
Q 044293 159 AELVQF 164 (236)
Q Consensus 159 ~~L~~~ 164 (236)
..++..
T Consensus 201 ~~l~~~ 206 (242)
T 2qk2_A 201 GTLIKL 206 (242)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888763
No 63
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.48 E-value=4.7e-06 Score=65.05 Aligned_cols=152 Identities=14% Similarity=0.124 Sum_probs=123.5
Q ss_pred CchHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCC
Q 044293 2 SAPRVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLN 81 (236)
Q Consensus 2 ~~~~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~ 81 (236)
+.+.+++..+.++..+++.++.+-.+|+++|..+..+.+-....+.+ .+..|.+++.++++-.++.++..+.-+.--
T Consensus 69 ~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~K---l~~aL~dlik~~~~il~~eaae~Lgklkv~ 145 (265)
T 3b2a_A 69 RMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFLK---AAKTLVSLLESPDDMMRIETIDVLSKLQPL 145 (265)
T ss_dssp HHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHHH---HHHHHHHHTTSCCHHHHHHHHHHHHHCCBS
T ss_pred cHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHHH---HHHHHHHHhcCCCchHHHHHHHHhCcCCcc
Confidence 45667889999999999999999999999999999887666666664 488899999999999999999999988221
Q ss_pred CchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHH
Q 044293 82 PDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAEL 161 (236)
Q Consensus 82 ~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L 161 (236)
.. ..+.+..+..++.+. +..++..+..++.+++...+.+..+. +.+.-+-.+|++.++.+++.|+.+|-.+
T Consensus 146 ~~------~~~V~~~l~sLl~Sk-d~~vK~agl~~L~eia~~S~D~~i~~--~I~~eI~elL~~eD~~l~e~aLd~Le~i 216 (265)
T 3b2a_A 146 ED------SKLVRTYINELVVSP-DLYTKVAGFCLFLNMLNSSADSGHLT--LILDEIPSLLQNDNEFIVELALDVLEKA 216 (265)
T ss_dssp CC------CHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHGGGCSSCCCGG--GTTTTHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred cc------hHHHHHHHHHHHhCC-ChhHHHHHHHHHHHhhcccCCHHHHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 11 245667888888666 89999999999999998776555543 4555566788899999999999999988
Q ss_pred hcCC
Q 044293 162 VQFH 165 (236)
Q Consensus 162 ~~~~ 165 (236)
...+
T Consensus 217 ls~p 220 (265)
T 3b2a_A 217 LSFP 220 (265)
T ss_dssp TTSC
T ss_pred HcCc
Confidence 8764
No 64
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.47 E-value=9.8e-07 Score=85.44 Aligned_cols=215 Identities=13% Similarity=0.093 Sum_probs=143.2
Q ss_pred HHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCch
Q 044293 5 RVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDL 84 (236)
Q Consensus 5 ~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~ 84 (236)
.....++.+++.|.+.++.+|..|+.+|..++..-+. . ... .+++.|+..+.++++.+|..++.+|..++..-..
T Consensus 45 ~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~--~-~~~--~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~ 119 (1230)
T 1u6g_C 45 SERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--Y-QVE--TIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPP 119 (1230)
T ss_dssp HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--H-HHH--HHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH--H-HHH--HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCC
Confidence 3457788899999989999999999999999875333 2 222 4788888888888888999888888887643221
Q ss_pred h------HHhhhcccHHHHHHHHhc-cCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHH
Q 044293 85 K------QSLASMETIYRLNWIIQS-SSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSS 157 (236)
Q Consensus 85 ~------~~i~~~g~i~~L~~lL~~-~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~a 157 (236)
. ..-.-...+|.|+..++. . +..++..|+.+|..++......-.-.-...++.|+..+.++++.++..|+.+
T Consensus 120 ~~~~~~~~~~~~~~llp~L~~~l~~~~-~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~a 198 (1230)
T 1u6g_C 120 ASSGSALAANVCKKITGRLTSAIAKQE-DVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIA 198 (1230)
T ss_dssp ----CCTHHHHHHHHHHHHHHHHSCCS-CHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHHcCCC-chHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 1 111234689999999984 5 7899999999999987532110000114677888888888888999999999
Q ss_pred HHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCC-hhhHHHHHhcCCcHHHHHHHhhCC
Q 044293 158 LAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARF-DEGMIALTKTDQIVSLMVDVLKGR 230 (236)
Q Consensus 158 L~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~g~~i~~lv~~l~~~ 230 (236)
|..++...... + -...++.++..+...+....+..++.++..++.. +..-.... ..+++.++..++..
T Consensus 199 l~~l~~~~~~~--~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l--~~l~~~ll~~l~d~ 267 (1230)
T 1u6g_C 199 LGHLVMSCGNI--V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYL--EKIIPLVVKFCNVD 267 (1230)
T ss_dssp HHHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSC--TTHHHHHHHHHSSC
T ss_pred HHHHHHhcCHH--H-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHhcCC
Confidence 99998754322 1 2356788888886542233445566666666532 22111111 23567777766543
No 65
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.44 E-value=6.2e-06 Score=76.60 Aligned_cols=218 Identities=14% Similarity=0.093 Sum_probs=140.1
Q ss_pred HHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCh-HHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCch
Q 044293 6 VRETINNCVSRSQSDSYEDQQKALQTLASITRVSP-QYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDL 84 (236)
Q Consensus 6 ~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~ 84 (236)
+...++.+...++++++.+|..|+.++..++.... +....... ..+|.++..++++++.+|..|++++.+++..-..
T Consensus 364 ~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~--~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~ 441 (876)
T 1qgr_A 364 VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVI--QAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE 441 (876)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH--HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHH--HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCch
Confidence 34566777778888899999999999999987632 32223332 6899999999999999999999999998764322
Q ss_pred hH--HhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccch------------hhhhhcc--cCcHHHHHHhhcCC--
Q 044293 85 KQ--SLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDK------------NKARFGV--AGTVQVLVKAVSAP-- 146 (236)
Q Consensus 85 ~~--~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~------------~~~~i~~--~g~i~~Lv~lL~~~-- 146 (236)
.. .-.-...++.++..+++ ++.++..++++|.+++.... ....+.. ...++.|+..+...
T Consensus 442 ~~~~~~~l~~~l~~l~~~l~~--~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~ 519 (876)
T 1qgr_A 442 AAINDVYLAPLLQCLIEGLSA--EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDG 519 (876)
T ss_dssp GTSSTTTHHHHHHHHHHHTTS--CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSS
T ss_pred hcccHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCc
Confidence 10 01123577788888865 47889999999999886532 0111221 46788888888764
Q ss_pred -CcHHHHHHHHHHHHHhcCC-CChHHHHHhCcHHHHHHHhcC----------CCh----hhHHHHHHHHHHHHcCCh--h
Q 044293 147 -SNPAGHHLLSSLAELVQFH-GNSTLAVRAGAVSELIHLIGS----------TEA----EDLAGTSLAVLNLLARFD--E 208 (236)
Q Consensus 147 -~~~~~~~a~~aL~~L~~~~-~~~~~~~~~g~i~~lv~ll~~----------~~~----~~~~~~a~~~L~~l~~~~--~ 208 (236)
+..++..+..++..++..- ..... .-...+|.+++.+.. .++ ++++..++.++..++..- +
T Consensus 520 ~~~~~r~~~~~~l~~l~~~~~~~~~~-~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~ 598 (876)
T 1qgr_A 520 HQNNLRSSAYESLMEIVKNSAKDCYP-AVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQ 598 (876)
T ss_dssp CSTTHHHHHHHHHHHHHHTCCSTTHH-HHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHH
T ss_pred chhhHHHHHHHHHHHHHHHCchhhHH-HHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChh
Confidence 3456777888888887643 22222 224566777766642 122 345667788888877532 2
Q ss_pred hHHHHHhcCCcHHHHHHHhhCC
Q 044293 209 GMIALTKTDQIVSLMVDVLKGR 230 (236)
Q Consensus 209 ~~~~i~~~g~~i~~lv~~l~~~ 230 (236)
.-..+.. .+++.++.++++.
T Consensus 599 ~~~~~~~--~l~~~l~~~l~~~ 618 (876)
T 1qgr_A 599 DALQISD--VVMASLLRMFQST 618 (876)
T ss_dssp HHHTTHH--HHHHHHHHHC---
T ss_pred hhhHHHH--HHHHHHHHHHHhc
Confidence 2222221 2466666666654
No 66
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.43 E-value=4.6e-06 Score=77.34 Aligned_cols=218 Identities=14% Similarity=0.140 Sum_probs=140.7
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCh-HHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchh
Q 044293 7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSP-QYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLK 85 (236)
Q Consensus 7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~ 85 (236)
...++.+.+.+++.++..+..|+.++..++.... ..-..... .+++.|+..+.++++.++..+++++..++..-...
T Consensus 368 ~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~--~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 445 (861)
T 2bpt_A 368 EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH--QALPSILNLMNDQSLQVKETTAWCIGRIADSVAES 445 (861)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH--HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH--HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhh
Confidence 4556666777778889999999999999997632 22222332 57999999999889999999999998877532110
Q ss_pred --HHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccch--hhhhhcc--cCcHHHHHHhhcCCC--cHHHHHHHHH
Q 044293 86 --QSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDK--NKARFGV--AGTVQVLVKAVSAPS--NPAGHHLLSS 157 (236)
Q Consensus 86 --~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~--~~~~i~~--~g~i~~Lv~lL~~~~--~~~~~~a~~a 157 (236)
..-.-...++.++..+++ ++.++..|+++|.+++..-. ....+.. ...++.|++.+.+.+ +.++..++.+
T Consensus 446 ~~~~~~~~~~l~~l~~~l~~--~~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~a 523 (861)
T 2bpt_A 446 IDPQQHLPGVVQACLIGLQD--HPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSA 523 (861)
T ss_dssp SCTTTTHHHHHHHHHHHHTS--CHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhcc--ChHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHH
Confidence 000123567888888865 48899999999998876421 0122211 466788888887543 6788899999
Q ss_pred HHHHhcCCCC-hHHHHHhCcHHHHHHHhcCC--------------ChhhHHHHHHHHHHHHcCC-hhhHHHHHhcCCcHH
Q 044293 158 LAELVQFHGN-STLAVRAGAVSELIHLIGST--------------EAEDLAGTSLAVLNLLARF-DEGMIALTKTDQIVS 221 (236)
Q Consensus 158 L~~L~~~~~~-~~~~~~~g~i~~lv~ll~~~--------------~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~g~~i~ 221 (236)
+..++..... ....+ ...+|.+++.+... ....++..++.+|..++.. +..-..+.. .+++
T Consensus 524 l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~--~l~~ 600 (861)
T 2bpt_A 524 LTTMVEYATDTVAETS-ASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD--MLMG 600 (861)
T ss_dssp HHHHHHHCCGGGHHHH-HHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHH--HHHH
T ss_pred HHHHHHHcchhhHHHH-HHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH--HHHH
Confidence 9998874332 22222 24677777777531 1234667788888877742 221111221 2456
Q ss_pred HHHHHhhCCc
Q 044293 222 LMVDVLKGRS 231 (236)
Q Consensus 222 ~lv~~l~~~~ 231 (236)
.++..++..+
T Consensus 601 ~l~~~l~~~~ 610 (861)
T 2bpt_A 601 LFFRLLEKKD 610 (861)
T ss_dssp HHHHHHHSTT
T ss_pred HHHHHHccCC
Confidence 6666666543
No 67
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.42 E-value=2.5e-05 Score=64.32 Aligned_cols=186 Identities=17% Similarity=0.107 Sum_probs=136.2
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHH
Q 044293 8 ETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQS 87 (236)
Q Consensus 8 ~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~ 87 (236)
-.+..+++.|.+++.+..+.++..|..+...+......|+.. ||+..|+......+..++.-++.++.++=.+.++...
T Consensus 118 ~ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~-~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~g 196 (339)
T 3dad_A 118 VRVNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHS-EGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLG 196 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHT-THHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHh-ccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccc
Confidence 356777888888888899999999998444456788888887 9999999999999999999999999999999888777
Q ss_pred hh-hcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccch-hhhhhccc----------CcHHHHHHhhc---CCCcHHHH
Q 044293 88 LA-SMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDK-NKARFGVA----------GTVQVLVKAVS---APSNPAGH 152 (236)
Q Consensus 88 i~-~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~----------g~i~~Lv~lL~---~~~~~~~~ 152 (236)
++ ....|..+..++.+. +..+.+.|+..|..++...+ +...+.+. --.+.|+.+|+ +.+.+.+.
T Consensus 197 vvs~~~fI~~lyslv~s~-~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~ 275 (339)
T 3dad_A 197 VVAHSDTIQWLYTLCASL-SRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLV 275 (339)
T ss_dssp HHHCHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHH
T ss_pred hhCCHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHH
Confidence 76 678999999999976 89999999999999987764 33333221 13779999998 55667777
Q ss_pred HHHHHHHHHhcCCCC---hHHH----HHhCcHHHHHHHhcCC-ChhhHHHH
Q 044293 153 HLLSSLAELVQFHGN---STLA----VRAGAVSELIHLIGST-EAEDLAGT 195 (236)
Q Consensus 153 ~a~~aL~~L~~~~~~---~~~~----~~~g~i~~lv~ll~~~-~~~~~~~~ 195 (236)
+|+.-+-.+-..-.. +..+ -+.|.=..+...++.. .+++++++
T Consensus 276 ~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 276 YTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp HHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence 777666444432222 2222 2345555566666553 23444443
No 68
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.41 E-value=1.9e-05 Score=71.29 Aligned_cols=189 Identities=13% Similarity=0.056 Sum_probs=119.4
Q ss_pred HHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCch
Q 044293 5 RVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDL 84 (236)
Q Consensus 5 ~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~ 84 (236)
-++..++.+.+.|+++++.+|..|+.++.++...+++. .+ ++++.+..+|...++.++..|+.+|..++.++..
T Consensus 139 ~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~----v~--~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~ 212 (618)
T 1w63_A 139 MCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPEL----ME--MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPD 212 (618)
T ss_dssp HHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGG----GG--GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHH----HH--HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChH
Confidence 34666888888999999999999999999998776643 22 6888899999999999999999999999876432
Q ss_pred h-HHhhhcccHHHHHHHHhc--------------cCCHHHHHHHHHHHHHhcccchh-hhhh------------------
Q 044293 85 K-QSLASMETIYRLNWIIQS--------------SSSQETVKLASSLICSLAMLDKN-KARF------------------ 130 (236)
Q Consensus 85 ~-~~i~~~g~i~~L~~lL~~--------------~~~~~~~~~a~~~L~~Ls~~~~~-~~~i------------------ 130 (236)
. ..+ ...+|.++.+|+. ..++-.+.....+|..++..+.. ...+
T Consensus 213 ~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~ 290 (618)
T 1w63_A 213 MLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVG 290 (618)
T ss_dssp HHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHH
T ss_pred HHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchH
Confidence 1 112 2456666666653 11455555666666655543210 0000
Q ss_pred -----------c--------ccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhh
Q 044293 131 -----------G--------VAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAED 191 (236)
Q Consensus 131 -----------~--------~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~ 191 (236)
. ...+++.|..++.+.++.++..|+.+|..++.... .++ ....+.++..+.+.+ ..
T Consensus 291 ~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p---~~~-~~~~~~i~~~l~d~d-~~ 365 (618)
T 1w63_A 291 NAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDH---NAV-QRHRSTIVDCLKDLD-VS 365 (618)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHH---HHH-GGGHHHHHHGGGSSC-HH
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCH---HHH-HHHHHHHHHHccCCC-hh
Confidence 0 01245667777776666777777777776664311 111 123445555555543 55
Q ss_pred HHHHHHHHHHHHcCC
Q 044293 192 LAGTSLAVLNLLARF 206 (236)
Q Consensus 192 ~~~~a~~~L~~l~~~ 206 (236)
++..|+.+|..++..
T Consensus 366 Ir~~alelL~~l~~~ 380 (618)
T 1w63_A 366 IKRRAMELSFALVNG 380 (618)
T ss_dssp HHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHccc
Confidence 666666666666543
No 69
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.41 E-value=8.8e-06 Score=75.43 Aligned_cols=190 Identities=10% Similarity=0.078 Sum_probs=131.4
Q ss_pred HhHHHHHHHHhcC-------CCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhC
Q 044293 7 RETINNCVSRSQS-------DSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLS 79 (236)
Q Consensus 7 ~~~i~~lv~~L~~-------~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~ 79 (236)
...++.++..+.. ++..++..+..+|..++.... ..+.. ..++.+...+++.+...++.++.++..++
T Consensus 323 ~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~---~~~~~--~l~~~l~~~l~~~~~~~r~~a~~~l~~i~ 397 (861)
T 2bpt_A 323 KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG---NHILE--PVLEFVEQNITADNWRNREAAVMAFGSIM 397 (861)
T ss_dssp HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG---GGGHH--HHHHHHHHHTTCSSHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc---HhHHH--HHHHHHHHHcCCCChhHHHHHHHHHHHHH
Confidence 5677888888864 234678888899988876421 12222 46777777788888899999999999998
Q ss_pred CCCchhHHhh--hcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhh---hhhcccCcHHHHHHhhcCCCcHHHHHH
Q 044293 80 LNPDLKQSLA--SMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNK---ARFGVAGTVQVLVKAVSAPSNPAGHHL 154 (236)
Q Consensus 80 ~~~~~~~~i~--~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~---~~i~~~g~i~~Lv~lL~~~~~~~~~~a 154 (236)
..... ..+. -...++.++..+++. ++.++..++++|..++..-... ... -...++.|++.+.+. +.++..+
T Consensus 398 ~~~~~-~~~~~~l~~il~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~~~~l~~l~~~l~~~-~~v~~~a 473 (861)
T 2bpt_A 398 DGPDK-VQRTYYVHQALPSILNLMNDQ-SLQVKETTAWCIGRIADSVAESIDPQQH-LPGVVQACLIGLQDH-PKVATNC 473 (861)
T ss_dssp SSSCH-HHHHHHHHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHHGGGSCTTTT-HHHHHHHHHHHHTSC-HHHHHHH
T ss_pred cCCCH-HHHHHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHhhhhcCCHHH-HHHHHHHHHHHhccC-hHHHHHH
Confidence 65321 1121 135788888888877 8999999999999888653211 111 146788888888765 7889999
Q ss_pred HHHHHHHhcCCC----ChHHHHHhCcHHHHHHHhcCCC-hhhHHHHHHHHHHHHcC
Q 044293 155 LSSLAELVQFHG----NSTLAVRAGAVSELIHLIGSTE-AEDLAGTSLAVLNLLAR 205 (236)
Q Consensus 155 ~~aL~~L~~~~~----~~~~~~~~g~i~~lv~ll~~~~-~~~~~~~a~~~L~~l~~ 205 (236)
+++|.+++..-. ..-.-.-...++.++.++.+.+ +..++..++.++..++.
T Consensus 474 ~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~ 529 (861)
T 2bpt_A 474 SWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVE 529 (861)
T ss_dssp HHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHH
Confidence 999999886421 1110011356788888887543 35788888888888774
No 70
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.41 E-value=1.4e-06 Score=84.31 Aligned_cols=211 Identities=11% Similarity=0.034 Sum_probs=143.8
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChH-HHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchh
Q 044293 7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQ-YRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLK 85 (236)
Q Consensus 7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~ 85 (236)
...++.++..+.++|+++|..|...|.+....+.. ...... . ..++.|++.|.+.++++|..|+.+|.+++..-..
T Consensus 5 ~~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~-~-~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~- 81 (1230)
T 1u6g_C 5 SYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSE-R-KVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE- 81 (1230)
T ss_dssp CHHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHH-H-HHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-
T ss_pred HhHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHH-H-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-
Confidence 35688889999999999999999999887654210 000111 1 4688888999888999999999999998764322
Q ss_pred HHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhh------hhhcccCcHHHHHHhhc-CCCcHHHHHHHHHH
Q 044293 86 QSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNK------ARFGVAGTVQVLVKAVS-APSNPAGHHLLSSL 158 (236)
Q Consensus 86 ~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~------~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~aL 158 (236)
.. -...++.++..+.+. ++.+|..|+.+|..++..-... ..-.-...+|.|++.+. ++++.++..|+.+|
T Consensus 82 ~~--~~~i~~~Ll~~l~d~-~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l 158 (1230)
T 1u6g_C 82 YQ--VETIVDTLCTNMLSD-KEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIM 158 (1230)
T ss_dssp HH--HHHHHHHHHHHTTCS-SSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHH
Confidence 11 134677788888776 6788888888888876543211 00112578899999998 47788999999999
Q ss_pred HHHhcC-CCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChhhHHHHHhcCCcHHHHHHHhhC
Q 044293 159 AELVQF-HGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGMIALTKTDQIVSLMVDVLKG 229 (236)
Q Consensus 159 ~~L~~~-~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~~i~~lv~~l~~ 229 (236)
..++.. +..-.. .....++.++..+.+.+ +.+++.|+.+|..++..... .+. ..+++.++..+..
T Consensus 159 ~~~~~~~~~~l~~-~~~~ll~~l~~~L~~~~-~~vR~~a~~al~~l~~~~~~--~~~--~~~l~~l~~~L~~ 224 (1230)
T 1u6g_C 159 ADMLSRQGGLLVN-FHPSILTCLLPQLTSPR-LAVRKRTIIALGHLVMSCGN--IVF--VDLIEHLLSELSK 224 (1230)
T ss_dssp HHHHHHTCSSCTT-THHHHHHHHGGGGGCSS-HHHHHHHHHHHHHHTTTC------C--TTHHHHHHHHHHH
T ss_pred HHHHHHhHhHHHH-HHHHHHHHHHHHHcCCc-HHHHHHHHHHHHHHHHhcCH--HHH--HHHHHHHHHHhcc
Confidence 999852 111110 11346677778887764 68999999999999864322 222 2257777776654
No 71
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.31 E-value=1.1e-05 Score=72.79 Aligned_cols=182 Identities=11% Similarity=0.057 Sum_probs=130.1
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhH
Q 044293 7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQ 86 (236)
Q Consensus 7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~ 86 (236)
...-...++++.+++.+.++-+.-.+..++..+++... -++..|.+-|+++++.++..|+.+|+++.. +
T Consensus 69 ~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~------l~in~l~kDL~~~n~~vr~lAL~~L~~i~~-~---- 137 (618)
T 1w63_A 69 HFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHL------LMTNCIKNDLNHSTQFVQGLALCTLGCMGS-S---- 137 (618)
T ss_dssp GGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHH------HHHHHHHHHHSCSSSHHHHHHHHHHHHHCC-H----
T ss_pred cchHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHH------HHHHHHHHhcCCCCHhHHHHHHHHHHhcCC-H----
Confidence 34455666667777777777777777777776543211 246667777888899999999999999873 1
Q ss_pred HhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCC
Q 044293 87 SLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHG 166 (236)
Q Consensus 87 ~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~ 166 (236)
.+. ...++.+.+.|++. ++-+++.|+.++.++.... ...+ .+.++.+..+|.+.++.++..|+.+|..++....
T Consensus 138 ~~~-~~l~~~l~~~L~~~-~~~VRk~A~~al~~l~~~~--p~~v--~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~ 211 (618)
T 1w63_A 138 EMC-RDLAGEVEKLLKTS-NSYLRKKAALCAVHVIRKV--PELM--EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSP 211 (618)
T ss_dssp HHH-HHHHHHHHHHHHSC-CHHHHHHHHHHHHHHHHHC--GGGG--GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHH
T ss_pred HHH-HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHC--hHHH--HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhCh
Confidence 222 46788999999988 8999999999999998633 2222 3788888999999999999999999999987532
Q ss_pred ChHHHHHhCcHHHHHHHhcC--------------CChhhHHHHHHHHHHHHcCC
Q 044293 167 NSTLAVRAGAVSELIHLIGS--------------TEAEDLAGTSLAVLNLLARF 206 (236)
Q Consensus 167 ~~~~~~~~g~i~~lv~ll~~--------------~~~~~~~~~a~~~L~~l~~~ 206 (236)
.... .-...+|.++.+|.+ ..++-.+-..+.+|..++..
T Consensus 212 ~~~~-~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~ 264 (618)
T 1w63_A 212 DMLA-HFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRN 264 (618)
T ss_dssp HHHH-HHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTT
T ss_pred HHHH-HHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCC
Confidence 2111 123678888887753 11245566777888887753
No 72
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.24 E-value=3.2e-05 Score=71.84 Aligned_cols=192 Identities=13% Similarity=0.056 Sum_probs=134.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCc-----
Q 044293 9 TINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPD----- 83 (236)
Q Consensus 9 ~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~----- 83 (236)
.++.+...+.+++++++..++++|..++...+..-...... ..++.++..+.+.++.++..++.++..++....
T Consensus 218 il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~ 296 (876)
T 1qgr_A 218 IMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGP-ALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIE 296 (876)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTT-THHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhh
Confidence 46666677777888999999999999887654332223333 688888888888888999999988888765320
Q ss_pred --------------hhHHh--hhcccHHHHHHHHhcc------CCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHH
Q 044293 84 --------------LKQSL--ASMETIYRLNWIIQSS------SSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVK 141 (236)
Q Consensus 84 --------------~~~~i--~~~g~i~~L~~lL~~~------~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ 141 (236)
....+ .-...++.++..+... ++..++..|+.+|..++.... ..+. ...++.+..
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~--~~~~-~~~l~~l~~ 373 (876)
T 1qgr_A 297 ASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DDIV-PHVLPFIKE 373 (876)
T ss_dssp HHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG--GGGH-HHHHHHHHH
T ss_pred hccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCc--HhhH-HHHHHHHHH
Confidence 00011 0134677777777532 134688888888888876443 1222 356777778
Q ss_pred hhcCCCcHHHHHHHHHHHHHhcCCC-C-hHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCC
Q 044293 142 AVSAPSNPAGHHLLSSLAELVQFHG-N-STLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARF 206 (236)
Q Consensus 142 lL~~~~~~~~~~a~~aL~~L~~~~~-~-~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~ 206 (236)
.+.+.+..++..++.+|..++.... . ... .-...+|.++..+.+.+ +.++..|+.+|.+++..
T Consensus 374 ~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~-~~~~~l~~l~~~l~d~~-~~vr~~a~~~l~~~~~~ 438 (876)
T 1qgr_A 374 HIKNPDWRYRDAAVMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKDPS-VVVRDTAAWTVGRICEL 438 (876)
T ss_dssp HTTCSSHHHHHHHHHHHHHTSSSSCHHHHHH-HHHHHHHHHHHHHTCSS-HHHHHHHHHHHHHHHHH
T ss_pred HccCCChHHHHHHHHHHHHHHcCCCHHHHHH-HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHh
Confidence 8888888999999999999987543 1 112 22468899999998874 78999999999998853
No 73
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.15 E-value=6e-05 Score=62.12 Aligned_cols=172 Identities=17% Similarity=0.148 Sum_probs=125.7
Q ss_pred HHhhccCCChHHHHHHHHHHHh-hCCCCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhc-cc
Q 044293 56 LLGLSKSSSPIIRTLSLSILLN-LSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFG-VA 133 (236)
Q Consensus 56 Lv~lL~~~~~~~~~~a~~~L~~-l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~-~~ 133 (236)
+++-|.+.+.+.++.++.-|.. ++.+.+--..+++.+|+..|+++...+ +.+.+.+++.++.+|....+...-+. ..
T Consensus 123 iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~-~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~ 201 (339)
T 3dad_A 123 ILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAA-DHNYQSYILRALGQLMLFVDGMLGVVAHS 201 (339)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTS-CHHHHHHHHHHHHHHTTSHHHHHHHHHCH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhc-ChHHHHHHHHHHHHHHhccccccchhCCH
Confidence 4444555666667778888887 666778899999999999999999988 89999999999999988876665555 57
Q ss_pred CcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCC-CChHHHHHh--------C--cHHHHHHHhc---CCChhhHHHHHHHH
Q 044293 134 GTVQVLVKAVSAPSNPAGHHLLSSLAELVQFH-GNSTLAVRA--------G--AVSELIHLIG---STEAEDLAGTSLAV 199 (236)
Q Consensus 134 g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~-~~~~~~~~~--------g--~i~~lv~ll~---~~~~~~~~~~a~~~ 199 (236)
.+|..+..++.+....+.+.|+..|..++.+. .+...+.++ | -.+.++.+|+ .. +.+++.+|+..
T Consensus 202 ~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~-D~elq~~amtL 280 (339)
T 3dad_A 202 DTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGA-DPELLVYTVTL 280 (339)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCC-CHHHHHHHHHH
Confidence 89999999999888888899999999999864 454443322 2 2678999997 34 47888888877
Q ss_pred HHHHcC---ChhhHHHHH---hcCCcHHHHHHHhhC
Q 044293 200 LNLLAR---FDEGMIALT---KTDQIVSLMVDVLKG 229 (236)
Q Consensus 200 L~~l~~---~~~~~~~i~---~~g~~i~~lv~~l~~ 229 (236)
+..+.. +.+.+..+. +.-|+-..+.+.++.
T Consensus 281 IN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~ 316 (339)
T 3dad_A 281 INKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGT 316 (339)
T ss_dssp HHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSC
T ss_pred HHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhc
Confidence 765442 233344433 334532344445654
No 74
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.13 E-value=0.00024 Score=61.35 Aligned_cols=220 Identities=14% Similarity=0.076 Sum_probs=141.7
Q ss_pred hHHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCh---HHHHHHHhccCcHHHHHh-hccCCChHHHHHHHHHHHhhCCCC
Q 044293 8 ETINNCVSRSQ-SDSYEDQQKALQTLASITRVSP---QYRSLLAQTDGAISTLLG-LSKSSSPIIRTLSLSILLNLSLNP 82 (236)
Q Consensus 8 ~~i~~lv~~L~-~~~~~~~~~a~~~L~~l~~~~~---~~~~~i~~~~g~i~~Lv~-lL~~~~~~~~~~a~~~L~~l~~~~ 82 (236)
..+..++.+|+ ....++..+.+..+..+...++ ...+.|.+.+.....+.. ++..+++-.+..+..++..++...
T Consensus 77 ~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~~ 156 (480)
T 1ho8_A 77 KTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNG 156 (480)
T ss_dssp TTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTT
T ss_pred hHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhccC
Confidence 45677888886 5678889999998998888766 445666665343333443 344444455566666655554322
Q ss_pred chhHHhhhcccHH--HHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhccc--CcHHHHHHhhcCC------------
Q 044293 83 DLKQSLASMETIY--RLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVA--GTVQVLVKAVSAP------------ 146 (236)
Q Consensus 83 ~~~~~i~~~g~i~--~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~--g~i~~Lv~lL~~~------------ 146 (236)
..-... -...+. .+...|.+..+.+.+--++.+|..|...+.+|..+.+. +.+|+++++++..
T Consensus 157 ~~~~~~-l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~ 235 (480)
T 1ho8_A 157 LHNVKL-VEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVAT 235 (480)
T ss_dssp TCCHHH-HHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC----------
T ss_pred CccHhH-HHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccc
Confidence 110001 011223 45556655323555667889999999999999998763 3478887655421
Q ss_pred -----CcHHHHHHHHHHHHHhcCCCChHHHHHhCcH--HHHHHHhcCCChhhHHHHHHHHHHHHcCCh-----hhHH-HH
Q 044293 147 -----SNPAGHHLLSSLAELVQFHGNSTLAVRAGAV--SELIHLIGSTEAEDLAGTSLAVLNLLARFD-----EGMI-AL 213 (236)
Q Consensus 147 -----~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i--~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~-----~~~~-~i 213 (236)
+.+...+++-+++-|+.+++....+...+.. +.++++++....+.+...++.+|.|+...+ .... .+
T Consensus 236 ~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~ 315 (480)
T 1ho8_A 236 NSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLL 315 (480)
T ss_dssp ---CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHH
T ss_pred cCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHH
Confidence 2345789999999999998887888777754 678888887655778889999999998653 1122 23
Q ss_pred HhcCCcHHHHHHHhhCC
Q 044293 214 TKTDQIVSLMVDVLKGR 230 (236)
Q Consensus 214 ~~~g~~i~~lv~~l~~~ 230 (236)
+..+ .++++..|+.+
T Consensus 316 ~~~~--~l~~l~~L~~r 330 (480)
T 1ho8_A 316 LLGN--ALPTVQSLSER 330 (480)
T ss_dssp HHHC--HHHHHHHHHSS
T ss_pred HHcc--chHHHHHHhhC
Confidence 3333 36677777543
No 75
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.07 E-value=4.9e-05 Score=60.70 Aligned_cols=156 Identities=12% Similarity=0.095 Sum_probs=115.0
Q ss_pred HHHhHHHHHHHHh-cCCCHHHHHHHHHHHHHHhcC-C-hHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCC
Q 044293 5 RVRETINNCVSRS-QSDSYEDQQKALQTLASITRV-S-PQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLN 81 (236)
Q Consensus 5 ~~~~~i~~lv~~L-~~~~~~~~~~a~~~L~~l~~~-~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~ 81 (236)
++.+.+..|.+.+ ++.+..++..|+.+|..++.. . +........ -.+|.++..+....+.+++.+..++..++.+
T Consensus 57 ~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~--~llp~ll~~l~dkk~~V~~aa~~al~~i~~~ 134 (249)
T 2qk1_A 57 NYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVS--LVFTPLLDRTKEKKPSVIEAIRKALLTICKY 134 (249)
T ss_dssp CCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHH--HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 3456788888888 788999999999999999854 1 222212332 4799999999988888888888888776653
Q ss_pred CchhHHhh--hcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhh-hhhc---ccCcHHHHHHhhcCCCcHHHHHHH
Q 044293 82 PDLKQSLA--SMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNK-ARFG---VAGTVQVLVKAVSAPSNPAGHHLL 155 (236)
Q Consensus 82 ~~~~~~i~--~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~-~~i~---~~g~i~~Lv~lL~~~~~~~~~~a~ 155 (236)
-+- .... -...++.|...|++. ++.++..++.+|..+....... ..+. ....+|.|.+.+.+.+..++..|.
T Consensus 135 ~~~-~~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~ 212 (249)
T 2qk1_A 135 YDP-LASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGF 212 (249)
T ss_dssp SCT-TCTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHH
T ss_pred ccc-cccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 211 1111 124788889999988 8999999999999887654311 2221 258899999999999999999999
Q ss_pred HHHHHHhcC
Q 044293 156 SSLAELVQF 164 (236)
Q Consensus 156 ~aL~~L~~~ 164 (236)
.+|..++..
T Consensus 213 ~~l~~i~~~ 221 (249)
T 2qk1_A 213 ESFAILIKI 221 (249)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999888763
No 76
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.00 E-value=0.00032 Score=63.29 Aligned_cols=182 Identities=13% Similarity=0.087 Sum_probs=123.3
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhcc----CC-------------ChHHHHH
Q 044293 8 ETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSK----SS-------------SPIIRTL 70 (236)
Q Consensus 8 ~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~----~~-------------~~~~~~~ 70 (236)
+.++.+.++|.+.++.++..|+.++..++.++++. +. ..+|.++..|. .+ ++-.|-.
T Consensus 187 ~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~---~~---~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~ 260 (621)
T 2vgl_A 187 DWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEE---FK---TSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVK 260 (621)
T ss_dssp SCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHH---HT---THHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHH
T ss_pred hHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHH---HH---HHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHH
Confidence 67889999999999999999999999998876542 11 34555554432 21 5778888
Q ss_pred HHHHHHhhCCCCc--hhHHhhhcccHHHHHHHH---------hccCCH--HHHHHHHHHHHHhcccchhhhhhcccCcHH
Q 044293 71 SLSILLNLSLNPD--LKQSLASMETIYRLNWII---------QSSSSQ--ETVKLASSLICSLAMLDKNKARFGVAGTVQ 137 (236)
Q Consensus 71 a~~~L~~l~~~~~--~~~~i~~~g~i~~L~~lL---------~~~~~~--~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~ 137 (236)
.+..+..++..++ .+..+. +.++.++..+ ++. +. .+.-.|+.++.++...++.. ..++.
T Consensus 261 il~ll~~~~~~~d~~~~~~l~--~~L~~il~~~~~~~ks~~l~~~-n~~~aVl~ea~~~i~~l~~~~~~~-----~~~~~ 332 (621)
T 2vgl_A 261 LLRLLQCYPPPEDPAVRGRLT--ECLETILNKAQEPPKSKKVQHS-NAKNAVLFEAISLIIHHDSEPNLL-----VRACN 332 (621)
T ss_dssp HHHHGGGSSSCSSHHHHHHHH--HHHHHHHHHHHSCCSCSSHHHH-HHHHHHHHHHHHHHHHHCCCHHHH-----HHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHH--HHHHHHHHhhccCccccccccc-chHHHHHHHHHHHHHhcCCcHHHH-----HHHHH
Confidence 8888888876432 233332 2344444332 111 22 56667888888886322211 24678
Q ss_pred HHHHhhcCCCcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhc-CCChhhHHHHHHHHHHHHcCC
Q 044293 138 VLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIG-STEAEDLAGTSLAVLNLLARF 206 (236)
Q Consensus 138 ~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~-~~~~~~~~~~a~~~L~~l~~~ 206 (236)
.|..+|.+.++.++..++.+|..++...+....+ ....+.++..|. +.| ..++..++.+|..++..
T Consensus 333 ~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~--~~~~~~i~~~L~~d~d-~~Ir~~aL~lL~~l~~~ 399 (621)
T 2vgl_A 333 QLGQFLQHRETNLRYLALESMCTLASSEFSHEAV--KTHIETVINALKTERD-VSVRQRAVDLLYAMCDR 399 (621)
T ss_dssp HHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHH--HTTHHHHHHHHTTCCC-HHHHHHHHHHHHHHCCH
T ss_pred HHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHH--HHHHHHHHHHhccCCC-HhHHHHHHHHHHHHcCh
Confidence 8999998888889999999999998765432222 356677888887 664 77888999999888754
No 77
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.95 E-value=0.00059 Score=58.90 Aligned_cols=190 Identities=14% Similarity=0.222 Sum_probs=122.8
Q ss_pred HHHHhcC-CCHHHHHHHHHHHHHHhcCChHHHHHHHhccC-cHHHHHhhccC---------------C--ChHHHHHHHH
Q 044293 13 CVSRSQS-DSYEDQQKALQTLASITRVSPQYRSLLAQTDG-AISTLLGLSKS---------------S--SPIIRTLSLS 73 (236)
Q Consensus 13 lv~~L~~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g-~i~~Lv~lL~~---------------~--~~~~~~~a~~ 73 (236)
+...|.. ++.+.+--++.+|..+... ++.|..|.+.+| .+|.++..++. + ...++-.++-
T Consensus 172 ~~~~L~~~~~~~~~~i~v~~L~~Ll~~-~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll 250 (480)
T 1ho8_A 172 LINILQNIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLL 250 (480)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHH
T ss_pred HHHHhccccCCchHHHHHHHHHHHhcc-hhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHH
Confidence 4445544 3455566688889998886 788998886523 36777654331 1 2456788899
Q ss_pred HHHhhCCCCchhHHhhhcccH--HHHHHHHhccCCHHHHHHHHHHHHHhcccc-----hh-hhhhccc------------
Q 044293 74 ILLNLSLNPDLKQSLASMETI--YRLNWIIQSSSSQETVKLASSLICSLAMLD-----KN-KARFGVA------------ 133 (236)
Q Consensus 74 ~L~~l~~~~~~~~~i~~~g~i--~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~-----~~-~~~i~~~------------ 133 (236)
+++.++.+++....+...+.. +.|+++++....+.+.+-+..+|.||.... .. +..+...
T Consensus 251 ~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~l~~l~~L~~r 330 (480)
T 1ho8_A 251 LIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSER 330 (480)
T ss_dssp HHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSS
T ss_pred HHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccchHHHHHHhhC
Confidence 999999999877777766543 677777876545778888888888887643 11 1111111
Q ss_pred ----------------------------------------------------------------CcHHHHHHhhcC----
Q 044293 134 ----------------------------------------------------------------GTVQVLVKAVSA---- 145 (236)
Q Consensus 134 ----------------------------------------------------------------g~i~~Lv~lL~~---- 145 (236)
..+..|+++|.+
T Consensus 331 k~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~ 410 (480)
T 1ho8_A 331 KYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRN 410 (480)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccc
Confidence 223333344431
Q ss_pred ------CCcHHHHHHHHHHHHHhc-CCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHc
Q 044293 146 ------PSNPAGHHLLSSLAELVQ-FHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLA 204 (236)
Q Consensus 146 ------~~~~~~~~a~~aL~~L~~-~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~ 204 (236)
.++.+..-||.=++.++. +|++|..+-+.|+=..+++||.+.+ ++++..|+.++.-+.
T Consensus 411 ~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d-~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 411 GDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSD-SRVKYEALKATQAII 475 (480)
T ss_dssp TCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSS-HHHHHHHHHHHHHHH
T ss_pred cccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCC-HHHHHHHHHHHHHHH
Confidence 112233344444566666 4566666667899999999999885 899999998887654
No 78
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.95 E-value=0.00099 Score=50.29 Aligned_cols=187 Identities=14% Similarity=0.112 Sum_probs=129.5
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccC-CChHHHHHHHHHHHhhCCCCchh
Q 044293 7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKS-SSPIIRTLSLSILLNLSLNPDLK 85 (236)
Q Consensus 7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~ 85 (236)
++.+..++..|.++=+.+|..|+..+...+...++..+ ..+..|+-+++. .....-...+.++..++.- +
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~e------pl~~kL~vm~~ksEaIpltqeIa~a~G~la~i---~ 101 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYE------PMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKE---K 101 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHH------HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH---C
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHH------HHHHHHHHHHhhcccCchHHHHHHHHhHHHHh---C
Confidence 45778899999888899999999999999988776544 345666666653 3444434456777776652 2
Q ss_pred HHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCC
Q 044293 86 QSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFH 165 (236)
Q Consensus 86 ~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~ 165 (236)
+.++ .+.+|.+..-..-+ ++.++.+...+|-.++... -..+ .+.+.-+..++.++|...+-.|+..+..+.
T Consensus 102 Pe~v-~~vVp~lfanyrig-d~kikIn~~yaLeeIaran--P~l~--~~v~rdi~smltskd~~Dkl~aLnFi~alG--- 172 (253)
T 2db0_A 102 PELV-KSMIPVLFANYRIG-DEKTKINVSYALEEIAKAN--PMLM--ASIVRDFMSMLSSKNREDKLTALNFIEAMG--- 172 (253)
T ss_dssp HHHH-HHHHHHHHHHSCCC-SHHHHHHHHHHHHHHHHHC--HHHH--HHHHHHHHHHTSCSSHHHHHHHHHHHHTCC---
T ss_pred HHHH-HhhHHHHHHHHhcC-CccceecHHHHHHHHHHhC--hHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHh---
Confidence 3333 34667777777778 8999999999999887733 2222 466788888998887655555555554443
Q ss_pred CChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC-ChhhHHHH
Q 044293 166 GNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR-FDEGMIAL 213 (236)
Q Consensus 166 ~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~i 213 (236)
+|.-.-+ .-.+|.+..||.+.+ .-++..++.+|.+++. +|.-|..+
T Consensus 173 en~~~yv-~PfLprL~aLL~D~d-eiVRaSaVEtL~~lA~~npklRkii 219 (253)
T 2db0_A 173 ENSFKYV-NPFLPRIINLLHDGD-EIVRASAVEALVHLATLNDKLRKVV 219 (253)
T ss_dssp TTTHHHH-GGGHHHHHGGGGCSS-HHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred ccCcccc-CcchHHHHHHHcCcc-hhhhHHHHHHHHHHHHcCHHHHHHH
Confidence 3322221 345789999999885 6778899999999996 56655543
No 79
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.83 E-value=0.00028 Score=63.72 Aligned_cols=143 Identities=12% Similarity=0.044 Sum_probs=108.6
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHH
Q 044293 8 ETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQS 87 (236)
Q Consensus 8 ~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~ 87 (236)
..-+..++.+.+++.+.++-+.-.+..++..+++.- . =++..+.+=|+++++.++..|+.+|+++.. ..
T Consensus 74 ~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~---~---L~iN~l~kDl~~~n~~ir~lALr~L~~i~~-----~e 142 (621)
T 2vgl_A 74 FGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELI---R---LINNAIKNDLASRNPTFMGLALHCIANVGS-----RE 142 (621)
T ss_dssp SCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHH---H---HHHHHHHHHHHSCCHHHHHHHHHHHHHHCC-----HH
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHH---H---HHHHHHHHhcCCCCHHHHHHHHHHhhccCC-----HH
Confidence 344566777778888888888888888887755432 1 135556666778899999999999999865 22
Q ss_pred hhhcccHHHHHHHH--hccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCC
Q 044293 88 LASMETIYRLNWII--QSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFH 165 (236)
Q Consensus 88 i~~~g~i~~L~~lL--~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~ 165 (236)
+. ...++.+.+.| .+. ++-+++.|+.++.++.... ...+...+.++.+.++|.+.++.++..|+.++..++...
T Consensus 143 ~~-~~l~~~v~~~l~~~d~-~~~VRK~A~~al~kl~~~~--p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~ 218 (621)
T 2vgl_A 143 MA-EAFAGEIPKILVAGDT-MDSVKQSAALCLLRLYRTS--PDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKN 218 (621)
T ss_dssp HH-HHHTTHHHHHHHCSSS-CHHHHHHHHHHHHHHHHHC--GGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC
T ss_pred HH-HHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHHhC--hhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhC
Confidence 33 35778889999 666 8999999999999988743 233333589999999999889999999999999998743
No 80
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.80 E-value=0.00019 Score=60.19 Aligned_cols=178 Identities=11% Similarity=0.031 Sum_probs=78.4
Q ss_pred HHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchh
Q 044293 6 VRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLK 85 (236)
Q Consensus 6 ~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~ 85 (236)
+++..+.+.+.|.+.++-++..|+-+..++...+++. ++ ++++.+-+++...++-++..|+.+|..+..++.
T Consensus 137 ~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~----v~--~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~-- 208 (355)
T 3tjz_B 137 LQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDV----VK--RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR-- 208 (355)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHH----HH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH--
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHH----HH--HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch--
Confidence 3444444555555555555555555555555444332 21 455555555555555555555555555544321
Q ss_pred HHhhhcccHHHHHHHHhccC--CHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhc
Q 044293 86 QSLASMETIYRLNWIIQSSS--SQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQ 163 (236)
Q Consensus 86 ~~i~~~g~i~~L~~lL~~~~--~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~ 163 (236)
..+..++..+..+. ++-.+..-...+..+...++.. .....++.+...|++.++.+.-.|++++..+..
T Consensus 209 ------~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~---~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~ 279 (355)
T 3tjz_B 209 ------LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS---RDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG 279 (355)
T ss_dssp ------HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC--------------------CCCCCSSHHHHHHHHHHHTC---
T ss_pred ------HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh---hHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC
Confidence 02223333333221 2222222222222222211000 113455666666777778888999999988765
Q ss_pred CCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC
Q 044293 164 FHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR 205 (236)
Q Consensus 164 ~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~ 205 (236)
.+.. . ..-++..+..++.+++ +.++-.|+..|..+..
T Consensus 280 ~~~~---~-~~~a~~~L~~fLss~d-~niryvaLr~L~~l~~ 316 (355)
T 3tjz_B 280 CSAK---E-LAPAVSVLQLFCSSPK-AALRYAAVRTLNKVAM 316 (355)
T ss_dssp ------------CCCTHHHHHHSSS-SSSHHHHHHCC-----
T ss_pred CCHH---H-HHHHHHHHHHHHcCCC-chHHHHHHHHHHHHHH
Confidence 2221 1 1334566667777664 6788888888877764
No 81
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.79 E-value=0.00078 Score=54.32 Aligned_cols=196 Identities=14% Similarity=0.053 Sum_probs=122.2
Q ss_pred CCchHHHh--HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHH---HHHHhccCcHHHHHhhccCCChHHHHHHHHHH
Q 044293 1 MSAPRVRE--TINNCVSRSQSDSYEDQQKALQTLASITRVSPQYR---SLLAQTDGAISTLLGLSKSSSPIIRTLSLSIL 75 (236)
Q Consensus 1 ~~~~~~~~--~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~---~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L 75 (236)
||+++=.+ -+| +-+.|.+.+...|..|+..|..+....+... ..+..-....+.+-..+...+..++..++.++
T Consensus 1 m~~~e~~d~sklp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l 79 (278)
T 4ffb_C 1 MSGEEEVDYTTLP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVAL 79 (278)
T ss_dssp ----------CCC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHH
T ss_pred CCCcchhhhhcCC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 66655322 234 5688899999999999999988776532211 11111113455566777788889999999988
Q ss_pred HhhCCCC---ch-hHH--hhhcccHHHHHHH-HhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCc
Q 044293 76 LNLSLNP---DL-KQS--LASMETIYRLNWI-IQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSN 148 (236)
Q Consensus 76 ~~l~~~~---~~-~~~--i~~~g~i~~L~~l-L~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~ 148 (236)
..++..- .. +.. ..-...++.|+.- +.+. ...++..+..++..+........ ..++.++..+.+.++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~-k~~~~~~a~~~l~~~~~~~~~~~-----~~~e~l~~~l~~Knp 153 (278)
T 4ffb_C 80 NSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSS-RATTKTQSMSCILSLCGLDTSIT-----QSVELVIPFFEKKLP 153 (278)
T ss_dssp HHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCC-CHHHHHHHHHHHHHHHHTSSSSH-----HHHHHHGGGGGCSCH
T ss_pred HHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHhcCcHH-----HHHHHHHHHHhccCH
Confidence 8765421 11 221 2234577777765 5666 67888888888877654332211 235677778889999
Q ss_pred HHHHHHHHHHHHHhcC--CC--ChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC
Q 044293 149 PAGHHLLSSLAELVQF--HG--NSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR 205 (236)
Q Consensus 149 ~~~~~a~~aL~~L~~~--~~--~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~ 205 (236)
.++..++..|..+... .. +.... -..+++.+..++.+.+ +.+++.|..++..+-.
T Consensus 154 kv~~~~l~~l~~~l~~fg~~~~~~k~~-l~~i~~~l~k~l~d~~-~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 154 KLIAAAANCVYELMAAFGLTNVNVQTF-LPELLKHVPQLAGHGD-RNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCCHHHH-HHHHGGGHHHHHTCSS-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCCCcCCchhH-HHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHH
Confidence 9999999888776542 11 11211 1235566778888885 8899999999887764
No 82
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=97.67 E-value=0.0023 Score=50.61 Aligned_cols=206 Identities=13% Similarity=0.100 Sum_probs=136.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHh-------hccCCC--h---HHHHHHHHHHH
Q 044293 9 TINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLG-------LSKSSS--P---IIRTLSLSILL 76 (236)
Q Consensus 9 ~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~-------lL~~~~--~---~~~~~a~~~L~ 76 (236)
.|..++.-|.+++ .|+.|+..|..--...++....+-.+.|.+..|++ .++++. . .-.-+|+..+-
T Consensus 4 ~i~qli~~L~~p~--~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQ 81 (268)
T 2fv2_A 4 KIYQWINELSSPE--TRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQ 81 (268)
T ss_dssp HHHHHHHHTSSTT--THHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCch--hHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHH
Confidence 3445555554443 57777666655444344555555555677776653 233321 1 12345666677
Q ss_pred hhCCCCchhHHhhhcccHHHHHHHHhccC----CHHHHHHHHHHHHHhcccch--hhhhhcccCcHHHHHHhhcCCCcHH
Q 044293 77 NLSLNPDLKQSLASMETIYRLNWIIQSSS----SQETVKLASSLICSLAMLDK--NKARFGVAGTVQVLVKAVSAPSNPA 150 (236)
Q Consensus 77 ~l~~~~~~~~~i~~~g~i~~L~~lL~~~~----~~~~~~~a~~~L~~Ls~~~~--~~~~i~~~g~i~~Lv~lL~~~~~~~ 150 (236)
.+|.||+.|..+.+....--|--+|+... .+-.+..+.+++..|...++ .-.-+.+.+.+|..++.+..++.-.
T Consensus 82 cvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselS 161 (268)
T 2fv2_A 82 CVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELS 161 (268)
T ss_dssp HHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHH
T ss_pred HHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHH
Confidence 88999999999998876655555666442 24577789999999987654 2233346899999999999999777
Q ss_pred HHHHHHHHHHHhcCCCChHHHHH--------hCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChhhHHHHHhc
Q 044293 151 GHHLLSSLAELVQFHGNSTLAVR--------AGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGMIALTKT 216 (236)
Q Consensus 151 ~~~a~~aL~~L~~~~~~~~~~~~--------~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~ 216 (236)
+.-|.-.+..+-.++.+-..+++ ..++..++.-+.....+.+.++.+++-.-|+.++..|+.+.+.
T Consensus 162 KtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~~ 235 (268)
T 2fv2_A 162 KTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQC 235 (268)
T ss_dssp HHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 77777666666555554433332 2445556665544445788999999999999999999988753
No 83
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=97.46 E-value=0.0025 Score=50.41 Aligned_cols=147 Identities=18% Similarity=0.121 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCC-----hHHHHHHHHHHHhhCCCCch--hHHhhhcccHHH
Q 044293 24 DQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSS-----PIIRTLSLSILLNLSLNPDL--KQSLASMETIYR 96 (236)
Q Consensus 24 ~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~-----~~~~~~a~~~L~~l~~~~~~--~~~i~~~g~i~~ 96 (236)
..+.|+..|+.++.+ ++.|..|.++ .+.-.|-.+|+..+ +-.|-.++++++.+.+.++. -..+.+.+.+|.
T Consensus 72 RVcnaLaLlQcvAsh-petr~~Fl~a-~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiipl 149 (268)
T 2fv2_A 72 RVCNALALLQCVASH-PETRSAFLAA-HIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPL 149 (268)
T ss_dssp HHHHHHHHHHHHHHC-TTTHHHHHHT-TGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHcC-cchhhHHHHc-cchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHH
Confidence 446788888999975 7899999998 87777888887543 34577888999999876543 445558899999
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcc--------cCcHHHHHH-hhcCCCcHHHHHHHHHHHHHhcCCCC
Q 044293 97 LNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGV--------AGTVQVLVK-AVSAPSNPAGHHLLSSLAELVQFHGN 167 (236)
Q Consensus 97 L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~--------~g~i~~Lv~-lL~~~~~~~~~~a~~aL~~L~~~~~~ 167 (236)
.++.++.| ++-.+.-|+-.+.++-.++....-+-. ...+..+|. +..+++++..++.+++-..|+.++..
T Consensus 150 CLrime~G-selSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~ra 228 (268)
T 2fv2_A 150 CLRIMESG-SELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRA 228 (268)
T ss_dssp HHHHHHHS-CHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHH
T ss_pred HHHHHhhc-cHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHH
Confidence 99999999 788888888888887777655444432 233333333 33467889999999999999999988
Q ss_pred hHHHHH
Q 044293 168 STLAVR 173 (236)
Q Consensus 168 ~~~~~~ 173 (236)
|..+.+
T Consensus 229 r~aL~~ 234 (268)
T 2fv2_A 229 REALRQ 234 (268)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888764
No 84
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.32 E-value=0.03 Score=52.51 Aligned_cols=98 Identities=15% Similarity=0.116 Sum_probs=72.3
Q ss_pred cHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhh-cCCCcHHHHHHHHHHHHHhcCCCChHHH
Q 044293 93 TIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAV-SAPSNPAGHHLLSSLAELVQFHGNSTLA 171 (236)
Q Consensus 93 ~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~a~~aL~~L~~~~~~~~~~ 171 (236)
.|+.|+..+.++.+.+++..|+.+|..+...+. ..++.++.+| ++.++.++..+..+|+.++.+..+.+
T Consensus 578 aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~--------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~-- 647 (963)
T 4ady_A 578 AVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY--------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQS-- 647 (963)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC--------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHH--
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHH--
Confidence 456666666655467888888888887655432 3577788755 56788899999999999998766533
Q ss_pred HHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC
Q 044293 172 VRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR 205 (236)
Q Consensus 172 ~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~ 205 (236)
++..|..+.++.+ ..++..|+-+|..+..
T Consensus 648 ----aid~L~~L~~D~d-~~Vrq~Ai~ALG~Ig~ 676 (963)
T 4ady_A 648 ----AIDVLDPLTKDPV-DFVRQAAMIALSMILI 676 (963)
T ss_dssp ----HHHHHHHHHTCSS-HHHHHHHHHHHHHHST
T ss_pred ----HHHHHHHHccCCC-HHHHHHHHHHHHHHhc
Confidence 3467777787774 7899999999998764
No 85
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.29 E-value=0.019 Score=54.18 Aligned_cols=194 Identities=9% Similarity=0.087 Sum_probs=131.9
Q ss_pred CCchHHHhHHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhC
Q 044293 1 MSAPRVRETINNCVSRSQSD-SYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLS 79 (236)
Q Consensus 1 ~~~~~~~~~i~~lv~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~ 79 (236)
|+++++...+|.|+..|++. .+..+..|+..+..++...++.-. . ..+..||.+-+.+-..-+++...|..++..+|
T Consensus 126 ~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~-~-~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~ 203 (986)
T 2iw3_A 126 VNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVA-L-RMPELIPVLSETMWDTKKEVKAAATAAMTKAT 203 (986)
T ss_dssp SCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHH-H-HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHG
T ss_pred CCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHH-H-hccchhcchHhhcccCcHHHHHHHHHHHHHHH
Confidence 56788889999999999755 589999999999999976543211 1 11467888888887778899998989998888
Q ss_pred CCCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHH
Q 044293 80 LNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLA 159 (236)
Q Consensus 80 ~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~ 159 (236)
..=.|++. ...||.|++.+.+. +-.-.+...|..-+...+.-.... +=.+|.|.+-|...+...++.++-++-
T Consensus 204 ~~~~n~d~---~~~~~~~~~~~~~p---~~~~~~~~~l~~~tfv~~v~~~~l-~~~~p~l~r~l~~~~~~~~r~~~~~~~ 276 (986)
T 2iw3_A 204 ETVDNKDI---ERFIPSLIQCIADP---TEVPETVHLLGATTFVAEVTPATL-SIMVPLLSRGLNERETGIKRKSAVIID 276 (986)
T ss_dssp GGCCCTTT---GGGHHHHHHHHHCT---THHHHHHHHHTTCCCCSCCCHHHH-HHHHHHHHHHHTSSSHHHHHHHHHHHH
T ss_pred hcCCCcch---hhhHHHHHHHhcCh---hhhHHHHHHhhcCeeEeeecchhH-HHHHHHHHhhhccCcchhheeeEEEEc
Confidence 76666543 45899999999865 223344444444444332221111 234677778888888888899999999
Q ss_pred HHhcCCCChHHHH--HhCcHHHHHHHhcCCChhhHHHHHHHHHHHH
Q 044293 160 ELVQFHGNSTLAV--RAGAVSELIHLIGSTEAEDLAGTSLAVLNLL 203 (236)
Q Consensus 160 ~L~~~~~~~~~~~--~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l 203 (236)
|+|.-=++...+. -...+|.+-.....-.+|+.++.|-+++.-|
T Consensus 277 n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l 322 (986)
T 2iw3_A 277 NMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTL 322 (986)
T ss_dssp HHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHH
T ss_pred chhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHH
Confidence 9998544433332 3567777777776544566665544444433
No 86
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.26 E-value=0.032 Score=42.21 Aligned_cols=105 Identities=10% Similarity=0.113 Sum_probs=45.5
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhH
Q 044293 7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQ 86 (236)
Q Consensus 7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~ 86 (236)
++.||.+..-+.-+++..+.....+|...+..||..-. +++.-+..++.+++..-+..|+..+..+. +|..
T Consensus 106 ~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~------~v~rdi~smltskd~~Dkl~aLnFi~alG---en~~ 176 (253)
T 2db0_A 106 KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA------SIVRDFMSMLSSKNREDKLTALNFIEAMG---ENSF 176 (253)
T ss_dssp HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH------HHHHHHHHHTSCSSHHHHHHHHHHHHTCC---TTTH
T ss_pred HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH------HHHHHHHHHhcCCChHHHHHHHHHHHHHh---ccCc
Confidence 34444444444444555555444445544444433211 33444445555444333333333333222 2211
Q ss_pred HhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcc
Q 044293 87 SLASMETIYRLNWIIQSSSSQETVKLASSLICSLAM 122 (236)
Q Consensus 87 ~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~ 122 (236)
.-+ ...+|.|..+|... |.-++.+|..+|.+++.
T Consensus 177 ~yv-~PfLprL~aLL~D~-deiVRaSaVEtL~~lA~ 210 (253)
T 2db0_A 177 KYV-NPFLPRIINLLHDG-DEIVRASAVEALVHLAT 210 (253)
T ss_dssp HHH-GGGHHHHHGGGGCS-SHHHHHHHHHHHHHHHT
T ss_pred ccc-CcchHHHHHHHcCc-chhhhHHHHHHHHHHHH
Confidence 111 23555555555554 45555555555555554
No 87
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.22 E-value=0.026 Score=45.19 Aligned_cols=175 Identities=15% Similarity=0.157 Sum_probs=115.1
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhh----ccCCChHHHHHHHHHHHhhCCC---Cchh
Q 044293 13 CVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGL----SKSSSPIIRTLSLSILLNLSLN---PDLK 85 (236)
Q Consensus 13 lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~l----L~~~~~~~~~~a~~~L~~l~~~---~~~~ 85 (236)
+...|.+.+...+.+|+..|.....+++ ...+.. +..++.. +...+..+...++.+|..+... .+.+
T Consensus 51 ~~~~lfs~d~k~~~~ale~L~~~l~~~~--~~~~~~----lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~ 124 (266)
T 2of3_A 51 LMSQLFHKDFKQHLAALDSLVRLADTSP--RSLLSN----SDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETP 124 (266)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHHHCH--HHHHHT----HHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhhhCh--HHHHHH----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3445556777788889888887765433 232322 3333332 3356888877788777765221 1111
Q ss_pred HHhh-hcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcC
Q 044293 86 QSLA-SMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQF 164 (236)
Q Consensus 86 ~~i~-~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~ 164 (236)
-.-. ..-.+|.|+.-+-.. .+.++..+-.++..++... .-...++.++.-+.+.|.+.+..++..+..+-..
T Consensus 125 ~~~~ea~~~lP~LveKlGd~-k~~vR~~~r~il~~l~~v~------~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~ 197 (266)
T 2of3_A 125 MSQEEVSAFVPYLLLKTGEA-KDNMRTSVRDIVNVLSDVV------GPLKMTPMLLDALKSKNARQRSECLLVIEYYITN 197 (266)
T ss_dssp CCHHHHHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHH------CHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 1111 134889999988776 6778887777776665421 1134677888888999999999999998887653
Q ss_pred CCChHHHHHhCcH---HHHHHHhcCCChhhHHHHHHHHHHHHcC
Q 044293 165 HGNSTLAVRAGAV---SELIHLIGSTEAEDLAGTSLAVLNLLAR 205 (236)
Q Consensus 165 ~~~~~~~~~~g~i---~~lv~ll~~~~~~~~~~~a~~~L~~l~~ 205 (236)
..-. ...++ |.+..++.+.+ ..+++.|+.++..+-.
T Consensus 198 ~G~~----~~~~l~~~~~ia~ll~D~d-~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 198 AGIS----PLKSLSVEKTVAPFVGDKD-VNVRNAAINVLVACFK 236 (266)
T ss_dssp HCSG----GGGGGCHHHHHGGGGGCSS-HHHHHHHHHHHHHHHH
T ss_pred cCCC----ccccccchHHHHHHHcCCC-HHHHHHHHHHHHHHHH
Confidence 2222 24578 99999999985 7899999999886543
No 88
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.07 E-value=0.054 Score=45.28 Aligned_cols=140 Identities=14% Similarity=0.100 Sum_probs=107.9
Q ss_pred CcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhh
Q 044293 51 GAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARF 130 (236)
Q Consensus 51 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i 130 (236)
......++++.+++...++-..-.+.+++..++.- + =.+..|.+=++++ ++-++..|.++|+++...+-.
T Consensus 68 ~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~--i---Lv~Nsl~kDl~~~-N~~iR~lALRtL~~I~~~~m~---- 137 (355)
T 3tjz_B 68 EAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDV--I---IVTSSLTKDMTGK-EDSYRGPAVRALCQITDSTML---- 137 (355)
T ss_dssp HHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCG--G---GGHHHHHHHHHSS-CHHHHHHHHHHHHHHCCTTTH----
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHH--H---HHHHHHHhhcCCC-cHhHHHHHHHHHhcCCCHHHH----
Confidence 45677788999999999999888998988874432 2 2566777888888 899999999999999775521
Q ss_pred cccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCCh
Q 044293 131 GVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFD 207 (236)
Q Consensus 131 ~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~ 207 (236)
....+.+.+.|.+.++.+++.|+-+...|.... .+. + .+.++.+-+++.+.+ +-++-+|+.+|..+..++
T Consensus 138 --~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~--pe~-v-~~~~~~l~~ll~d~n-~~V~~~Al~lL~ei~~~d 207 (355)
T 3tjz_B 138 --QAIERYMKQAIVDKVPSVSSSALVSSLHLLKCS--FDV-V-KRWVNEAQEAASSDN-IMVQYHALGLLYHVRKND 207 (355)
T ss_dssp --HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTC--HHH-H-HTTHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTC
T ss_pred --HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccC--HHH-H-HHHHHHHHHHhcCCC-ccHHHHHHHHHHHHHhhc
Confidence 245677778888899999999999988887532 222 2 368888999998874 677789999999998744
No 89
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=97.06 E-value=0.038 Score=45.51 Aligned_cols=215 Identities=15% Similarity=0.109 Sum_probs=144.2
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChH----HHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCc
Q 044293 8 ETINNCVSRSQSDSYEDQQKALQTLASITRVSPQ----YRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPD 83 (236)
Q Consensus 8 ~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~----~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~ 83 (236)
+.+..|+..|..-+-+.+..++....++.....+ .-+.+...+.++..|+.--. ++++--.+-..|..+..++.
T Consensus 78 dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe--~~diAl~~G~mLRecir~e~ 155 (341)
T 1upk_A 78 GLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLRECIRHEP 155 (341)
T ss_dssp SHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHHHHHTSHH
T ss_pred CHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc--cchhHhHHHHHHHHHHHhHH
Confidence 3445555555555666666666666665554322 11223323333333333322 33444456667888888888
Q ss_pred hhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHh-cccchhhhhhcc---cCcHHHHHHhhcCCCcHHHHHHHHHHH
Q 044293 84 LKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSL-AMLDKNKARFGV---AGTVQVLVKAVSAPSNPAGHHLLSSLA 159 (236)
Q Consensus 84 ~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~L-s~~~~~~~~i~~---~g~i~~Lv~lL~~~~~~~~~~a~~aL~ 159 (236)
....+...+.+..+.+.++.+ +-++...|..++..| +.+......+.. .-++...-++|.++|.-+++.++..|+
T Consensus 156 la~~iL~~~~f~~fF~yv~~~-~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLg 234 (341)
T 1upk_A 156 LAKIILWSEQFYDFFRYVEMS-TFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLG 234 (341)
T ss_dssp HHHHHHHSGGGGHHHHHTTCS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHhcCC-CchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHH
Confidence 877777788889999999988 899999999999965 444433334332 356777778999999999999999999
Q ss_pred HHhcCCCChHHHHHh----CcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChh----hHHHHHhcCCcHHHHHHHhhC
Q 044293 160 ELVQFHGNSTLAVRA----GAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDE----GMIALTKTDQIVSLMVDVLKG 229 (236)
Q Consensus 160 ~L~~~~~~~~~~~~~----g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~----~~~~i~~~g~~i~~lv~~l~~ 229 (236)
.+-..+.|...|.+. .-+..++.+|++.+ ..++-.|.-++.....+|. ....+.. . =..|++.+.+
T Consensus 235 elLldr~N~~vM~~Yis~~~nLkl~M~LL~d~s-k~Iq~EAFhVFKvFVANP~K~~~I~~IL~~-N--r~kLl~fl~~ 308 (341)
T 1upk_A 235 ELLLDRHNFTIMTKYISKPENLKLMMNLLRDKS-RNIQFEAFHVFKVFVANPNKTQPILDILLK-N--QAKLIEFLSK 308 (341)
T ss_dssp HHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHCSSCCHHHHHHHHH-T--HHHHHHHHHH
T ss_pred HHHhCchHHHHHHHHhCCHHHHHHHHHHhcCch-hchhhhhhhheeeeeeCCCCChHHHHHHHH-H--HHHHHHHHHh
Confidence 999999998777653 45788999999884 7788888888887665542 2333333 2 2566666654
No 90
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=96.99 E-value=0.09 Score=44.41 Aligned_cols=172 Identities=14% Similarity=0.112 Sum_probs=109.6
Q ss_pred HHHHHhcCC-CHHHHHHHHHHHHHHhcC-ChHHHHHHHhccCcHHHHHhhccC-----------CChHHHHHHHHHHHhh
Q 044293 12 NCVSRSQSD-SYEDQQKALQTLASITRV-SPQYRSLLAQTDGAISTLLGLSKS-----------SSPIIRTLSLSILLNL 78 (236)
Q Consensus 12 ~lv~~L~~~-~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~~g~i~~Lv~lL~~-----------~~~~~~~~a~~~L~~l 78 (236)
..++.|+++ ..+...+.+..|+.-... ....-+.|. . +|+..|+..|.. .+...+..++.+|..+
T Consensus 70 ~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~-~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkal 147 (383)
T 3eg5_B 70 MYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-A-EGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF 147 (383)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-H-HHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-H-ccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH
Confidence 345555543 233233455556543333 345557776 5 789999999852 1346677888999999
Q ss_pred CCCCchhHHhh-hcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccch--h-hhhh----------cccCcHHHHHHhhc
Q 044293 79 SLNPDLKQSLA-SMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDK--N-KARF----------GVAGTVQVLVKAVS 144 (236)
Q Consensus 79 ~~~~~~~~~i~-~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~--~-~~~i----------~~~g~i~~Lv~lL~ 144 (236)
-.+..+...+. ....+..|...|.+. ++.++..++..|..+|..++ + -..+ .+..-...++..+.
T Consensus 148 mN~~~G~~~vl~~~~~i~~l~~~L~s~-~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~ 226 (383)
T 3eg5_B 148 MNNKFGIKTMLETEEGILLLVRAMDPA-VPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK 226 (383)
T ss_dssp TSSHHHHHHHHTCSSHHHHHHHTCCTT-SHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTS
T ss_pred hcchhhHHHHHcChHHHHHHHHHhCCC-chHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 88888866666 568999999999888 89999999999988887653 2 2221 23456788888888
Q ss_pred CC-CcHHHHHHHHHHHHHhcCCCC-------hHHHHHhCcHHHHHHHhcCC
Q 044293 145 AP-SNPAGHHLLSSLAELVQFHGN-------STLAVRAGAVSELIHLIGST 187 (236)
Q Consensus 145 ~~-~~~~~~~a~~aL~~L~~~~~~-------~~~~~~~g~i~~lv~ll~~~ 187 (236)
+. +.+....++..+-.+..+++. |..+...|..+.+-. |+..
T Consensus 227 ~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~-lr~~ 276 (383)
T 3eg5_B 227 SGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQE-LREI 276 (383)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHH-HTTS
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHH-HhcC
Confidence 74 444445545445555555543 233445566555544 5543
No 91
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=96.93 E-value=0.029 Score=45.89 Aligned_cols=174 Identities=14% Similarity=0.119 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhccC---cHHHHHhhccC-CChHHHHHHHHHHHhhCCCCchhHHhhhc--ccHHHH
Q 044293 24 DQQKALQTLASITRVSPQYRSLLAQTDG---AISTLLGLSKS-SSPIIRTLSLSILLNLSLNPDLKQSLASM--ETIYRL 97 (236)
Q Consensus 24 ~~~~a~~~L~~l~~~~~~~~~~i~~~~g---~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~i~~~--g~i~~L 97 (236)
.+.-++..++.+..+ +.....+.+.++ .+..+...+.+ ..+..+-.++++++|+..++.++..+... ..++.+
T Consensus 118 ~~fPvLDLlRl~~l~-p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~ 196 (304)
T 3ebb_A 118 IVFPALDILRLSIKH-PSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHA 196 (304)
T ss_dssp TCHHHHHHHHHHTTS-HHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHH
T ss_pred hHHHHHHHHHHHHcC-ccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHH
Confidence 344566666666654 555555554312 22233344433 34566778999999999999998877642 344444
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcc-cCcHHHHHHhhcC-CCcHHHHHHHHHHHHHhcCCCChHHHHH-h
Q 044293 98 NWIIQSSSSQETVKLASSLICSLAMLDKNKARFGV-AGTVQVLVKAVSA-PSNPAGHHLLSSLAELVQFHGNSTLAVR-A 174 (236)
Q Consensus 98 ~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~-~~~~~~~~a~~aL~~L~~~~~~~~~~~~-~ 174 (236)
...+... +..++..+++++.|++..........+ ...+..+..++.. .+.+....++.+|++|...+.....+.+ .
T Consensus 197 ~~~~~~~-nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l 275 (304)
T 3ebb_A 197 IELKSGS-NKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSL 275 (304)
T ss_dssp HGGGSSC-CHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHhcCC-ChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHc
Confidence 4444444 788999999999999875321111111 2244444555543 4667888999999999976555555555 4
Q ss_pred CcHHHHHHHhcCCChhhHHHHHHHHH
Q 044293 175 GAVSELIHLIGSTEAEDLAGTSLAVL 200 (236)
Q Consensus 175 g~i~~lv~ll~~~~~~~~~~~a~~~L 200 (236)
|+-..+-.+...+..+.+ ..|++.+
T Consensus 276 ~~~~~v~~~~~~~~~~kv-~~~~~~~ 300 (304)
T 3ebb_A 276 GVDSQIKKYSSVSEPAKV-SECCRFI 300 (304)
T ss_dssp THHHHGGGGGGCCSSHHH-HHHHHHH
T ss_pred CHHHHHHHHHhCCCchhH-HHHHHHH
Confidence 555544444444332333 4444443
No 92
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=96.85 E-value=0.17 Score=47.72 Aligned_cols=199 Identities=9% Similarity=0.125 Sum_probs=113.6
Q ss_pred CCCHHHHHHHHHHHHHHhcCCh-------------HHHHHHHhccCcHHHHHhhccCC---ChHHHHHHHHHHHhhCCCC
Q 044293 19 SDSYEDQQKALQTLASITRVSP-------------QYRSLLAQTDGAISTLLGLSKSS---SPIIRTLSLSILLNLSLNP 82 (236)
Q Consensus 19 ~~~~~~~~~a~~~L~~l~~~~~-------------~~~~~i~~~~g~i~~Lv~lL~~~---~~~~~~~a~~~L~~l~~~~ 82 (236)
+++...+..|+.++..++.... +....+.+ .++..|+++ ++.+|..+++++..++..-
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~------~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~ 489 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTK------EIAPDLTSNNIPHIILRVDAIKYIYTFRNQL 489 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHH------HTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS
T ss_pred chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHH------HhHHHhcCCCCCCceehHHHHHHHHHHHhhC
Confidence 4566677888888888875311 11111111 122233444 7899999999999987642
Q ss_pred chhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccch---------hhhhhcc--cCcHHHHHHhhcCCC--c-
Q 044293 83 DLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDK---------NKARFGV--AGTVQVLVKAVSAPS--N- 148 (236)
Q Consensus 83 ~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~---------~~~~i~~--~g~i~~Lv~lL~~~~--~- 148 (236)
.+. . -...++.++..|.+. +..++..|+.+|.+++...+ .+..+.. ...++.|+.++...+ +
T Consensus 490 -~~~-~-l~~~l~~l~~~L~d~-~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~ 565 (960)
T 1wa5_C 490 -TKA-Q-LIELMPILATFLQTD-EYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPE 565 (960)
T ss_dssp -CHH-H-HHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHH
T ss_pred -CHH-H-HHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCC
Confidence 111 1 245678888888876 78999999999999987422 2344432 456666777777641 1
Q ss_pred --HHHHHHHHHHHHHhcC-CCChHHHHHhCcHHHHHHHhc----CCChhhHHHHHHHHHHHHcC--ChhhHHHHHhcCCc
Q 044293 149 --PAGHHLLSSLAELVQF-HGNSTLAVRAGAVSELIHLIG----STEAEDLAGTSLAVLNLLAR--FDEGMIALTKTDQI 219 (236)
Q Consensus 149 --~~~~~a~~aL~~L~~~-~~~~~~~~~~g~i~~lv~ll~----~~~~~~~~~~a~~~L~~l~~--~~~~~~~i~~~g~~ 219 (236)
.....+..+|..++.. ++...... ...++.++..+. +.+++.....++.++..++. +++....+.+. +
T Consensus 566 ~~~~~e~l~~al~~vv~~~~~~~~p~~-~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~--~ 642 (960)
T 1wa5_C 566 KLAENEFLMRSIFRVLQTSEDSIQPLF-PQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDS--M 642 (960)
T ss_dssp HHTSCHHHHHHHHHHHHHHTTTTGGGH-HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHH--H
T ss_pred cccccHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHH--H
Confidence 1234566666655431 22211111 124455555443 33345566667778877764 34444544442 4
Q ss_pred HHHHHHHhhCC
Q 044293 220 VSLMVDVLKGR 230 (236)
Q Consensus 220 i~~lv~~l~~~ 230 (236)
.|.+..+|+++
T Consensus 643 ~p~~~~iL~~~ 653 (960)
T 1wa5_C 643 MPTFLTVFSED 653 (960)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhh
Confidence 56666666543
No 93
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.69 E-value=0.052 Score=51.28 Aligned_cols=204 Identities=12% Similarity=0.094 Sum_probs=132.8
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCC-hHHHHHHHHHHHhhCCCCchhH
Q 044293 8 ETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSS-PIIRTLSLSILLNLSLNPDLKQ 86 (236)
Q Consensus 8 ~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~l~~~~~~~~ 86 (236)
+.++.+++.+.+....++..|-.++..+...- +-+++ . ..+|.|+..|.+.. =..+..|+.++..++... ..
T Consensus 95 ~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~--~~~a~-~--~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~--~~ 167 (986)
T 2iw3_A 95 QLVPAICTNAGNKDKEIQSVASETLISIVNAV--NPVAI-K--ALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA--KD 167 (986)
T ss_dssp TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS--CGGGH-H--HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS--HH
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhC--CHHHH-H--HHHHHHHHHhccccchHHHHHHHHHHHHHHHHh--HH
Confidence 45677777777777888887776766665432 12223 2 57999999886553 356777888888887644 33
Q ss_pred Hhh--hcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcC
Q 044293 87 SLA--SMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQF 164 (236)
Q Consensus 87 ~i~--~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~ 164 (236)
.+. =...||.+...+... .++++..|..++..+|..-+|+.. ...||.|++-+.+++. ...++..|..-+.-
T Consensus 168 ~~~~~~~~~~p~~~~~~~d~-k~~v~~~~~~~~~~~~~~~~n~d~---~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv 241 (986)
T 2iw3_A 168 QVALRMPELIPVLSETMWDT-KKEVKAAATAAMTKATETVDNKDI---ERFIPSLIQCIADPTE--VPETVHLLGATTFV 241 (986)
T ss_dssp HHHHHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHGGGCCCTTT---GGGHHHHHHHHHCTTH--HHHHHHHHTTCCCC
T ss_pred HHHHhccchhcchHhhcccC-cHHHHHHHHHHHHHHHhcCCCcch---hhhHHHHHHHhcChhh--hHHHHHHhhcCeeE
Confidence 333 357899999998877 799999999999999988888876 6889999999998842 34444444332221
Q ss_pred CCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCC---hhhHHHHHhcCCcHHHHHHHhh
Q 044293 165 HGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARF---DEGMIALTKTDQIVSLMVDVLK 228 (236)
Q Consensus 165 ~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~---~~~~~~i~~~g~~i~~lv~~l~ 228 (236)
.+.-.- .-+=.+|.|..=|+..+ ..+..+++-+..|||.- |..-..|.- -+.|.+-+...
T Consensus 242 ~~v~~~-~l~~~~p~l~r~l~~~~-~~~~r~~~~~~~n~~~lv~~~~~~~~f~~--~l~p~~~~~~~ 304 (986)
T 2iw3_A 242 AEVTPA-TLSIMVPLLSRGLNERE-TGIKRKSAVIIDNMCKLVEDPQVIAPFLG--KLLPGLKSNFA 304 (986)
T ss_dssp SCCCHH-HHHHHHHHHHHHHTSSS-HHHHHHHHHHHHHHHTTCCCHHHHHHHHT--TTHHHHHHHTT
T ss_pred eeecch-hHHHHHHHHHhhhccCc-chhheeeEEEEcchhhhcCCHHHHhhhhh--hhhhHHHHHhh
Confidence 222111 01123566666666553 55668888899999863 444444442 24455544443
No 94
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=96.59 E-value=0.24 Score=42.79 Aligned_cols=174 Identities=16% Similarity=0.160 Sum_probs=110.5
Q ss_pred CCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHH
Q 044293 19 SDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLN 98 (236)
Q Consensus 19 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~ 98 (236)
.+++...+-|+..|..+..+=|+..+ -+|..+++|....+..+|..|...|..+|.+ ++... ....|+
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~l~~------~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~k-----iaDvL~ 106 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPELAD------SAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPR-----VADILT 106 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGGGHH------HHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHH-----HHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhChhhHH------HHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhh-----HHHHHH
Confidence 45677777788888888877666533 4688888999999999999999999999988 44333 456789
Q ss_pred HHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhc--CCCChHHHHHhCc
Q 044293 99 WIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQ--FHGNSTLAVRAGA 176 (236)
Q Consensus 99 ~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~--~~~~~~~~~~~g~ 176 (236)
++|++. ++.-....-.+|..+-..+. .+.+..|...+.+++..+++.++..|..--. .++.-..-++.=+
T Consensus 107 QlLqtd-d~~E~~~V~~sL~sllk~Dp-------k~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i 178 (507)
T 3u0r_A 107 QLLQTD-DSAEFNLVNNALLSIFKMDA-------KGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELI 178 (507)
T ss_dssp HHTTCC-CHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHH
T ss_pred HHHhcc-chHHHHHHHHHHHHHHhcCh-------HHHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHH
Confidence 999987 55555555555554443331 3556777777777777888888888854332 2222223334445
Q ss_pred HHHHHHHhcCCChhhHHHHHHHHHHHHc--CChhhHHHH
Q 044293 177 VSELIHLIGSTEAEDLAGTSLAVLNLLA--RFDEGMIAL 213 (236)
Q Consensus 177 i~~lv~ll~~~~~~~~~~~a~~~L~~l~--~~~~~~~~i 213 (236)
+..+-++|.+-+..+ ....+.+|..+- .++.++.++
T Consensus 179 ~~~ikK~L~DVT~~E-F~L~m~lL~~lkl~~t~~g~qeL 216 (507)
T 3u0r_A 179 LTESKKVLEDVTGEE-FVLFMKILSGLKSLQTVSGRQQL 216 (507)
T ss_dssp HHHHHHHTTSCCHHH-HHHHHHHHHTSGGGSSHHHHHHH
T ss_pred HHHHHHHhccccHHH-HHHHHHHHHhcccccCchHHHHH
Confidence 555666665543222 255666665432 344444443
No 95
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=96.59 E-value=0.069 Score=41.83 Aligned_cols=121 Identities=12% Similarity=0.048 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHhcccchhhhhhcc-cCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCC--C-hHHHHHh--------
Q 044293 107 QETVKLASSLICSLAMLDKNKARFGV-AGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHG--N-STLAVRA-------- 174 (236)
Q Consensus 107 ~~~~~~a~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~--~-~~~~~~~-------- 174 (236)
.+....+..+|..+.........+.. .+++..|...|.++++.++..++..|..+|..++ + ...+.++
T Consensus 68 ~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~ 147 (233)
T 2f31_A 68 SRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMD 147 (233)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhC
Confidence 45666788888888877765655554 7899999999999999999999999999998654 6 5544332
Q ss_pred --CcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChh-------hHHHHHhcCCcHHHHHHHhhC
Q 044293 175 --GAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDE-------GMIALTKTDQIVSLMVDVLKG 229 (236)
Q Consensus 175 --g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~-------~~~~i~~~g~~i~~lv~~l~~ 229 (236)
.-+..+++.+...+..+.+..++..+..+...++ -|.++...| +..+++-++.
T Consensus 148 e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~G--l~~il~~l~~ 209 (233)
T 2f31_A 148 EVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLG--LHQVLQELRE 209 (233)
T ss_dssp TSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTT--HHHHHHHHHH
T ss_pred CcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC--hHHHHHHHhc
Confidence 2456688877654445566666666665655442 366677775 5777776664
No 96
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.58 E-value=0.27 Score=46.21 Aligned_cols=168 Identities=12% Similarity=0.011 Sum_probs=94.0
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhc-cCCChHHHHHHHHHHHhhCCCCchhH
Q 044293 8 ETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLS-KSSSPIIRTLSLSILLNLSLNPDLKQ 86 (236)
Q Consensus 8 ~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~~a~~~L~~l~~~~~~~~ 86 (236)
+.++.|...+.+++...+..|+.+|......+ .+.. ++..|+..+ ...+..+++.++..|..+....
T Consensus 472 ev~e~L~~~L~dd~~~~~~~AalALGli~vGT-gn~~-------ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~---- 539 (963)
T 4ady_A 472 EVYEALKEVLYNDSATSGEAAALGMGLCMLGT-GKPE-------AIHDMFTYSQETQHGNITRGLAVGLALINYGR---- 539 (963)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC-CCHH-------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC----
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhccc-CCHH-------HHHHHHHHHhccCcHHHHHHHHHHHHhhhCCC----
Confidence 34556666666555544555555555443221 1211 223333322 2345566666666766654432
Q ss_pred HhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcC-CCcHHHHHHHHHHHHHhcCC
Q 044293 87 SLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSA-PSNPAGHHLLSSLAELVQFH 165 (236)
Q Consensus 87 ~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~aL~~L~~~~ 165 (236)
...++.++..|....++-++..++.++.--.....| ...|+.|+..+.+ .++.+++.|+.+|+.+....
T Consensus 540 ----~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn------~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~ 609 (963)
T 4ady_A 540 ----QELADDLITKMLASDESLLRYGGAFTIALAYAGTGN------NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRD 609 (963)
T ss_dssp ----GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCC------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSS
T ss_pred ----hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCC------HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCC
Confidence 345667777777654666666666665422222222 3446767766654 46678889999998877654
Q ss_pred CChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC
Q 044293 166 GNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR 205 (236)
Q Consensus 166 ~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~ 205 (236)
+ ..++.++.+|....++.++..+.-+|..++.
T Consensus 610 ~--------e~v~rlv~~L~~~~d~~VR~gAalALGli~a 641 (963)
T 4ady_A 610 Y--------TTVPRIVQLLSKSHNAHVRCGTAFALGIACA 641 (963)
T ss_dssp C--------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTS
T ss_pred H--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 3 3456666655443346677777777777653
No 97
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=96.49 E-value=0.11 Score=42.40 Aligned_cols=170 Identities=12% Similarity=0.077 Sum_probs=104.1
Q ss_pred cHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHH----HHHhccCCHHHHHHHHHHHHHhcccchhh
Q 044293 52 AISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLN----WIIQSSSSQETVKLASSLICSLAMLDKNK 127 (236)
Q Consensus 52 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~----~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~ 127 (236)
.+..+..+++++. +.+--++.++.-+..++..-..+.+.+.-..++ ..+.+...+..+-.++++++|+-..+..+
T Consensus 104 ~l~~l~kil~WP~-~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~ 182 (304)
T 3ebb_A 104 QLQILWKAINCPE-DIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQ 182 (304)
T ss_dssp HHHHHHHHHTSCT-TTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHH
T ss_pred HHHHHHHHHcCCH-HhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhH
Confidence 4566667765543 445567777777777777655555332222333 33332225667888999999999888877
Q ss_pred hhhcc--cCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcC--C-CChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHH
Q 044293 128 ARFGV--AGTVQVLVKAVSAPSNPAGHHLLSSLAELVQF--H-GNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNL 202 (236)
Q Consensus 128 ~~i~~--~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~--~-~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~ 202 (236)
..+.. ...++.+...+.+.+..++..++..+.|++.. . ..... ..-++..+..++....+.+..-.++-+|.+
T Consensus 183 ~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~--~~~ll~~l~~il~~~~d~EalyR~LvALGt 260 (304)
T 3ebb_A 183 KLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEG--KAQCLSLISTILEVVQDLEATFRLLVALGT 260 (304)
T ss_dssp HHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHH--HHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchH--HHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 77664 34455555555556777888888888999873 1 12111 112445555666554456788899999999
Q ss_pred HcCChhhHHHHHhcCCcHHHHHH
Q 044293 203 LARFDEGMIALTKTDQIVSLMVD 225 (236)
Q Consensus 203 l~~~~~~~~~i~~~g~~i~~lv~ 225 (236)
|...+....++.+.=+ +...++
T Consensus 261 L~~~~~~~~~lak~l~-~~~~v~ 282 (304)
T 3ebb_A 261 LISDDSNAVQLAKSLG-VDSQIK 282 (304)
T ss_dssp HHTTCHHHHHHHHHTT-HHHHGG
T ss_pred HHhCChhHHHHHHHcC-HHHHHH
Confidence 9876544444444334 344444
No 98
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=96.38 E-value=0.2 Score=47.30 Aligned_cols=186 Identities=7% Similarity=0.102 Sum_probs=112.0
Q ss_pred HHHHHhcCC---CHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCc-----
Q 044293 12 NCVSRSQSD---SYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPD----- 83 (236)
Q Consensus 12 ~lv~~L~~~---~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~----- 83 (236)
.++..|+++ ++-+|..|++++..++..- ..+ ... .+++.++..|.++++.++..|+.+|.+++...+
T Consensus 459 ~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~--~~~-~l~--~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~ 533 (960)
T 1wa5_C 459 EIAPDLTSNNIPHIILRVDAIKYIYTFRNQL--TKA-QLI--ELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSP 533 (960)
T ss_dssp HTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS--CHH-HHH--HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSC
T ss_pred HhHHHhcCCCCCCceehHHHHHHHHHHHhhC--CHH-HHH--HHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccc
Confidence 345556666 8889999999999998752 122 232 578999999988889999999999999887522
Q ss_pred ----hhHHhh--hcccHHHHHHHHhccC-C-HH--HHHHHHHHHHHhcccc-hhhhhhcccCcHHHHHHhhc----CC-C
Q 044293 84 ----LKQSLA--SMETIYRLNWIIQSSS-S-QE--TVKLASSLICSLAMLD-KNKARFGVAGTVQVLVKAVS----AP-S 147 (236)
Q Consensus 84 ----~~~~i~--~~g~i~~L~~lL~~~~-~-~~--~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~----~~-~ 147 (236)
.+..+. -...++.|..+++... . .. ....+..+|..+...- +.-.... ...++.|+..+. ++ +
T Consensus 534 ~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~-~~l~~~L~~~l~~~~~~~~~ 612 (960)
T 1wa5_C 534 AFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLF-PQLLAQFIEIVTIMAKNPSN 612 (960)
T ss_dssp CBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGH-HHHHHHHHHHHHHHTTSCCC
T ss_pred cccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHHhCCCC
Confidence 234443 2457777777777630 0 11 2234555555443321 1111111 234555555553 22 3
Q ss_pred cHHHHHHHHHHHHHhcC-CCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHc
Q 044293 148 NPAGHHLLSSLAELVQF-HGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLA 204 (236)
Q Consensus 148 ~~~~~~a~~aL~~L~~~-~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~ 204 (236)
+.....++.+|..+... ......-.....+|.+...|.... .+..+.+..++..+.
T Consensus 613 ~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~-~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 613 PRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDI-QEFIPYVFQIIAFVV 669 (960)
T ss_dssp HHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTC-TTTHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhh-HhhHHHHHHHHHHHH
Confidence 34556678888888765 222223345567888888887642 345566666665554
No 99
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=96.30 E-value=0.28 Score=38.33 Aligned_cols=177 Identities=15% Similarity=0.135 Sum_probs=107.6
Q ss_pred HHHhcCC-CHHHHHHHHHHHHHH-hcCChHHHHHHHhccCcHHHHHhhccC----C-------ChHHHHHHHHHHHhhCC
Q 044293 14 VSRSQSD-SYEDQQKALQTLASI-TRVSPQYRSLLAQTDGAISTLLGLSKS----S-------SPIIRTLSLSILLNLSL 80 (236)
Q Consensus 14 v~~L~~~-~~~~~~~a~~~L~~l-~~~~~~~~~~i~~~~g~i~~Lv~lL~~----~-------~~~~~~~a~~~L~~l~~ 80 (236)
++.|++. .++...+.+..|+.. -.+...+-+.| .. +|+..|+..|.. + +...+..++.+|..+..
T Consensus 6 i~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F-~~-~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn 83 (233)
T 2f31_A 6 IQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GA-EGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN 83 (233)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HH-HHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHhccchHHHHHHHHHHhHhHhcCCcHHHHHH-HH-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC
Confidence 4445433 333223344555433 33334566777 55 889999988753 1 23557788899999988
Q ss_pred CCchhHHhh-hcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccch--h-hhhh----------cccCcHHHHHHhhcCC
Q 044293 81 NPDLKQSLA-SMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDK--N-KARF----------GVAGTVQVLVKAVSAP 146 (236)
Q Consensus 81 ~~~~~~~i~-~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~--~-~~~i----------~~~g~i~~Lv~lL~~~ 146 (236)
+..+...+. ..+.+..+...|.+. ++.++..++..|..+|..++ + -..+ .+..-..++++.+.+.
T Consensus 84 ~~~G~~~vl~~~~~i~~l~~~L~s~-~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~ 162 (233)
T 2f31_A 84 NKFGIKTMLETEEGILLLVRAMDPA-VPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG 162 (233)
T ss_dssp SHHHHHHHHTSSSHHHHHHTTCCTT-SHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTT
T ss_pred ChHHHHHHHcCcHHHHHHHHHhCCC-CchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcC
Confidence 888866666 567899999999877 89999999988888887654 2 2221 2344567788888754
Q ss_pred C-cHHHHHHHHHHHHHhcCCCC-------hHHHHHhCcHHHHHHHhcCCChhhHHH
Q 044293 147 S-NPAGHHLLSSLAELVQFHGN-------STLAVRAGAVSELIHLIGSTEAEDLAG 194 (236)
Q Consensus 147 ~-~~~~~~a~~aL~~L~~~~~~-------~~~~~~~g~i~~lv~ll~~~~~~~~~~ 194 (236)
+ .+.+..++..+-.+..+++. |..+...|..+.+ +-++..+++++..
T Consensus 163 ~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il-~~l~~~~~~~L~~ 217 (233)
T 2f31_A 163 TSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVL-QELREIENEDMKV 217 (233)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHH-HHHHHCCCHHHHH
T ss_pred ChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHH-HHHhccCCHHHHH
Confidence 3 34444444444555555544 3334445555444 4444433344433
No 100
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.15 E-value=0.067 Score=42.78 Aligned_cols=146 Identities=11% Similarity=0.027 Sum_probs=95.1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCh------HHHHHHHhccCcHHHHHhh-ccCCChHHHHHHHHHHHhhCCCCc
Q 044293 11 NNCVSRSQSDSYEDQQKALQTLASITRVSP------QYRSLLAQTDGAISTLLGL-SKSSSPIIRTLSLSILLNLSLNPD 83 (236)
Q Consensus 11 ~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~------~~~~~i~~~~g~i~~Lv~l-L~~~~~~~~~~a~~~L~~l~~~~~ 83 (236)
+.+...+++.+..++..++.++..++.... .....+.. .++|.|+.- |.+..+.++..+..++..++....
T Consensus 58 ~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~--~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~ 135 (278)
T 4ffb_C 58 TLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLIS--TWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT 135 (278)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHH--HHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHH--HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC
Confidence 345566678888999999999988875311 11112222 578888865 777788888888888776543322
Q ss_pred hhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhh-h--cccCcHHHHHHhhcCCCcHHHHHHHHHHHH
Q 044293 84 LKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKAR-F--GVAGTVQVLVKAVSAPSNPAGHHLLSSLAE 160 (236)
Q Consensus 84 ~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~-i--~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~ 160 (236)
.... .++.+...+++. ++.++..++..|..+...-..+.. . .-..+++.+.+++.+.++.++..|..++..
T Consensus 136 ~~~~-----~~e~l~~~l~~K-npkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ 209 (278)
T 4ffb_C 136 SITQ-----SVELVIPFFEKK-LPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVE 209 (278)
T ss_dssp SSHH-----HHHHHGGGGGCS-CHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHH
T ss_pred cHHH-----HHHHHHHHHhcc-CHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 2111 234555566666 899999888888876543221111 0 002355667788888999999999999887
Q ss_pred HhcC
Q 044293 161 LVQF 164 (236)
Q Consensus 161 L~~~ 164 (236)
+-.+
T Consensus 210 ly~~ 213 (278)
T 4ffb_C 210 IYKV 213 (278)
T ss_dssp HHTC
T ss_pred HHHH
Confidence 7654
No 101
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=96.09 E-value=0.2 Score=42.25 Aligned_cols=150 Identities=13% Similarity=0.059 Sum_probs=102.5
Q ss_pred hCCCCch-hHHhhhcccHHHHHHHHhcc----------CCHHHHHHHHHHHHHhcccchhhhhhcc-cCcHHHHHHhhcC
Q 044293 78 LSLNPDL-KQSLASMETIYRLNWIIQSS----------SSQETVKLASSLICSLAMLDKNKARFGV-AGTVQVLVKAVSA 145 (236)
Q Consensus 78 l~~~~~~-~~~i~~~g~i~~L~~lL~~~----------~~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~ 145 (236)
|-..+.. ...+. .+|+..|+.+|..- .+.+....+..+|..+..+......+.. ..++..|+..|.+
T Consensus 95 Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s 173 (383)
T 3eg5_B 95 LTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDP 173 (383)
T ss_dssp HHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCT
T ss_pred HhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCC
Confidence 3344433 45565 77899999998631 1346667788889888877765555554 8899999999999
Q ss_pred CCcHHHHHHHHHHHHHhcCCC--C-hHHHHH----------hCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCCh---h-
Q 044293 146 PSNPAGHHLLSSLAELVQFHG--N-STLAVR----------AGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFD---E- 208 (236)
Q Consensus 146 ~~~~~~~~a~~aL~~L~~~~~--~-~~~~~~----------~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~---~- 208 (236)
.++.++..++..|..+|..++ + ...+.+ ..-+..+++.|......+....++..+..+...+ +
T Consensus 174 ~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~ 253 (383)
T 3eg5_B 174 AVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF 253 (383)
T ss_dssp TSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred CchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHH
Confidence 999999999999999998654 4 444432 2346778888876434566666666666565543 2
Q ss_pred ---hHHHHHhcCCcHHHHHHHhhCC
Q 044293 209 ---GMIALTKTDQIVSLMVDVLKGR 230 (236)
Q Consensus 209 ---~~~~i~~~g~~i~~lv~~l~~~ 230 (236)
-|.++...| +..++.-++..
T Consensus 254 R~~lR~ef~~~G--l~~il~~lr~~ 276 (383)
T 3eg5_B 254 RVHIRSELMRLG--LHQVLQELREI 276 (383)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHTTS
T ss_pred HHHHHHHHHHCC--hHHHHHHHhcC
Confidence 355666775 46666666653
No 102
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=95.79 E-value=0.76 Score=43.08 Aligned_cols=155 Identities=12% Similarity=0.026 Sum_probs=92.5
Q ss_pred cCCChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHh---ccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHH
Q 044293 61 KSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQ---SSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQ 137 (236)
Q Consensus 61 ~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~---~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~ 137 (236)
++.+...++.++.++..++..-.. .....++.++..+. .+ ++.++..+++++..++..-....... ...++
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~----~~~~~l~~l~~~l~~l~~~-~~~vr~~~~~~l~~~~~~l~~~~~~l-~~vl~ 532 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDV----NYSDVVPGLIGLIPRISIS-NVQLADTVMFTIGALSEWLADHPVMI-NSVLP 532 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCS----SCCSHHHHHHHHGGGSCCC-SHHHHHHHHHHHHHTHHHHHHCHHHH-TTTHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCc----hhhHHHHHHHHHHHhCCCC-cHHHHHHHHHHHHHHHHHHHhCHHHH-HHHHH
Confidence 445667788888999988765322 01234445555442 23 67899999999998876422111222 57889
Q ss_pred HHHHhhcCCCcHHHHHHHHHHHHHhcCCCChHHHH--HhCcHHHHHHHhcCCC-hhhHHHHHHHHHHHHcC-C-hhhHHH
Q 044293 138 VLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAV--RAGAVSELIHLIGSTE-AEDLAGTSLAVLNLLAR-F-DEGMIA 212 (236)
Q Consensus 138 ~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~--~~g~i~~lv~ll~~~~-~~~~~~~a~~~L~~l~~-~-~~~~~~ 212 (236)
.|+..|.+ +.++..|+.+|.++|.... ..+. -...+..+..++...+ ....+..++.++..++. . ++.+..
T Consensus 533 ~l~~~l~~--~~V~~~A~~al~~l~~~~~--~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~ 608 (963)
T 2x19_B 533 LVLHALGN--PELSVSSVSTLKKICRECK--YDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILK 608 (963)
T ss_dssp HHHHHTTC--GGGHHHHHHHHHHHHHHTG--GGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHhCC--chHHHHHHHHHHHHHHHHH--HHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 99988865 7889999999999996321 1111 0233444555555422 24566777777777664 2 244544
Q ss_pred HHhcCCcHHHHHHHh
Q 044293 213 LTKTDQIVSLMVDVL 227 (236)
Q Consensus 213 i~~~g~~i~~lv~~l 227 (236)
.... +++++...+
T Consensus 609 ~~~~--l~~~l~~~l 621 (963)
T 2x19_B 609 NLHS--LISPYIQQL 621 (963)
T ss_dssp HHHH--HHHHHHHHH
T ss_pred HHHH--HHHHHHHHH
Confidence 4432 344444433
No 103
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=95.64 E-value=0.0086 Score=47.44 Aligned_cols=124 Identities=15% Similarity=0.105 Sum_probs=70.7
Q ss_pred HHhcCCCHHHHHHHHHH-----HHHHhcC-ChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHH-----HHhhCCCCc
Q 044293 15 SRSQSDSYEDQQKALQT-----LASITRV-SPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSI-----LLNLSLNPD 83 (236)
Q Consensus 15 ~~L~~~~~~~~~~a~~~-----L~~l~~~-~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~-----L~~l~~~~~ 83 (236)
.++++++++++..++.. +..+..+ ++..|....+. -..+.|..+++.+++.++..++.. +..+..+++
T Consensus 57 ~ll~d~~~~VR~~AA~~l~~~~l~~L~~D~~~~VR~~aA~~-L~~~~L~~ll~D~d~~VR~~aA~~l~~~~L~~L~~D~d 135 (244)
T 1lrv_A 57 QYLADPFWERRAIAVRYSPVEALTPLIRDSDEVVRRAVAYR-LPREQLSALMFDEDREVRITVADRLPLEQLEQMAADRD 135 (244)
T ss_dssp GGTTCSSHHHHHHHHTTSCGGGGGGGTTCSSHHHHHHHHTT-SCSGGGGGTTTCSCHHHHHHHHHHSCTGGGGGGTTCSS
T ss_pred HHhcCCCHHHHHHHHHhCCHHHHHHHccCcCHHHHHHHHHH-CCHHHHHHHHcCCCHHHHHHHHHhCCHHHHHHHHcCCC
Confidence 44578889999888754 3344433 56677777765 556777778888888888776653 223344433
Q ss_pred --hhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHH
Q 044293 84 --LKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSS 157 (236)
Q Consensus 84 --~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~a 157 (236)
.|..+...-..+.+..+++.. +.+++..++..+ .-+.+..++.+++..++..++..
T Consensus 136 ~~VR~~aA~~l~~~~l~~l~~D~-d~~VR~~aa~~l-----------------~~~ll~~ll~D~d~~VR~aaa~~ 193 (244)
T 1lrv_A 136 YLVRAYVVQRIPPGRLFRFMRDE-DRQVRKLVAKRL-----------------PEESLGLMTQDPEPEVRRIVASR 193 (244)
T ss_dssp HHHHHHHHHHSCGGGGGGTTTCS-CHHHHHHHHHHS-----------------CGGGGGGSTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHcCC-CHHHHHHHHHcC-----------------CHHHHHHHHcCCCHHHHHHHHHh
Confidence 244444332233333444444 666666666531 11333455566666666666654
No 104
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=95.53 E-value=0.37 Score=38.50 Aligned_cols=132 Identities=11% Similarity=-0.010 Sum_probs=91.3
Q ss_pred cCCCHHHHHHHHHHHHHHhc----CChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhh-hcc
Q 044293 18 QSDSYEDQQKALQTLASITR----VSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLA-SME 92 (236)
Q Consensus 18 ~~~~~~~~~~a~~~L~~l~~----~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~-~~g 92 (236)
.++++.+...++..|..+.. .+......-.. -.+|.|++-+......+|+.+-.++..++. +. -..
T Consensus 97 ~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~--~~lP~LveKlGd~k~~vR~~~r~il~~l~~-------v~~~~~ 167 (266)
T 2of3_A 97 FETNPAALIKVLELCKVIVELIRDTETPMSQEEVS--AFVPYLLLKTGEAKDNMRTSVRDIVNVLSD-------VVGPLK 167 (266)
T ss_dssp TSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHH--HHHHHHHHGGGCSSHHHHHHHHHHHHHHHH-------HHCHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHH--HHHHHHHHHhCCChHHHHHHHHHHHHHHHH-------HCCHHH
Confidence 46788888888888877642 11111221122 578999999977777888888777766543 12 123
Q ss_pred cHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcH---HHHHHhhcCCCcHHHHHHHHHHHHHhc
Q 044293 93 TIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTV---QVLVKAVSAPSNPAGHHLLSSLAELVQ 163 (236)
Q Consensus 93 ~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i---~~Lv~lL~~~~~~~~~~a~~aL~~L~~ 163 (236)
..+.++.-+++. +.-+++-++..+..+-...... ...++ |.+.+++.+.+..++..|+.++..+-.
T Consensus 168 v~~~l~~g~ksK-N~R~R~e~l~~l~~li~~~G~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 168 MTPMLLDALKSK-NARQRSECLLVIEYYITNAGIS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK 236 (266)
T ss_dssp HHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHHCSG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCC----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 555666767766 7888888888888775443322 24578 999999999999999999999876554
No 105
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=95.44 E-value=0.37 Score=40.15 Aligned_cols=110 Identities=14% Similarity=0.191 Sum_probs=85.6
Q ss_pred HHhhCCCCch-hHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhc-CCCcHHHH
Q 044293 75 LLNLSLNPDL-KQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVS-APSNPAGH 152 (236)
Q Consensus 75 L~~l~~~~~~-~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~ 152 (236)
|.++-.|+.+ .+.+++.+|+..+...++.. +.++.......|...|....-+. +--...+|.++..+. .+++++..
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYp-N~~l~RaG~KLLLQVSDaksL~~-t~L~e~LPFi~~~i~~h~eDdvvY 343 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYP-NNDLIRAGCKLLLQVSDAKALAK-TPLENILPFLLRLIEIHPDDEVIY 343 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSS-CHHHHHHHHHHHHHHTTCGGGGT-SCCTTHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHhcccccccceeecccceeEEEEeecC-CcHHHHhhhheeeeecchHHHhh-ccccccchHHHHHhccCCCcceEE
Confidence 3355666665 78899999999999999988 88998888888887776543221 112578899998886 56778889
Q ss_pred HHHHHHHHHhcCC-CChHHHHHhCcHHHHHHHhcC
Q 044293 153 HLLSSLAELVQFH-GNSTLAVRAGAVSELIHLIGS 186 (236)
Q Consensus 153 ~a~~aL~~L~~~~-~~~~~~~~~g~i~~lv~ll~~ 186 (236)
.-...|+|...++ ..++..+..|+|+.|-..+..
T Consensus 344 SGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~k 378 (619)
T 3c2g_A 344 SGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISK 378 (619)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHT
T ss_pred ecchHHHHHHhcccchHHHHhccCcHHHHHHHHhh
Confidence 9999999999887 456667889999999988854
No 106
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=95.28 E-value=0.012 Score=51.88 Aligned_cols=168 Identities=14% Similarity=0.121 Sum_probs=108.8
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHH
Q 044293 8 ETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQS 87 (236)
Q Consensus 8 ~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~ 87 (236)
+.+..++..+..+..+++-.++-.|..+ . +-... + +++++.++.-|+..+.+++..|+.+|.-++ .++.
T Consensus 263 ~IL~qLV~~l~~~~WEVRHGGLLGLKYL-~--DLL~~-L---d~Vv~aVL~GL~D~DDDVRAVAAetLiPIA-~p~~--- 331 (800)
T 3oc3_A 263 DIIEQLVGFLDSGDWQVQFSGLIALGYL-K--EFVED-K---DGLCRKLVSLLSSPDEDIKLLSAELLCHFP-ITDS--- 331 (800)
T ss_dssp CHHHHHTTGGGCSCHHHHHHHHHHHHHT-G--GGCCC-H---HHHHHHHHHHTTCSSHHHHHHHHHHHTTSC-CSST---
T ss_pred HHHHHHHhhcCCCCeeehhhhHHHHHHH-H--HHHHH-H---HHHHHHHHhhcCCcccHHHHHHHHHhhhhc-chhh---
Confidence 4455556556778899999999889888 2 11111 2 378999999999999999999999999988 2221
Q ss_pred hhhcccHHHHHHHHhccCCH-HHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCC
Q 044293 88 LASMETIYRLNWIIQSSSSQ-ETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHG 166 (236)
Q Consensus 88 i~~~g~i~~L~~lL~~~~~~-~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~ 166 (236)
-...+..+.+.|.+-+|. .........|..|+..+.+ .-.....+|.|...+++.-..++..++.+|..+.
T Consensus 332 --l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL---- 403 (800)
T 3oc3_A 332 --LDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSIPPERLKDIFPCFTSPVPEVRTSILNMVKNLS---- 403 (800)
T ss_dssp --HHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC----
T ss_pred --HHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH----
Confidence 123455666666653221 2233445566666665532 1223588999999999999999999999987766
Q ss_pred ChHHHHHhCcHHHHHH-HhcCCChhhHHHHHHHHHH
Q 044293 167 NSTLAVRAGAVSELIH-LIGSTEAEDLAGTSLAVLN 201 (236)
Q Consensus 167 ~~~~~~~~g~i~~lv~-ll~~~~~~~~~~~a~~~L~ 201 (236)
+ ..++..+.+ +|-.. .+++++.+..+..
T Consensus 404 ~------~~~LRLIFQNILLE~-neeIl~lS~~VWk 432 (800)
T 3oc3_A 404 E------ESIDFLVAEVVLIEE-KDEIREMAIKLLK 432 (800)
T ss_dssp C------HHHHHHHHHHHHHCS-CHHHHHHHHHHHH
T ss_pred h------hhHHHHHHHHHHhCC-cHHHHHHHHHHHH
Confidence 1 112233222 22223 3567776666664
No 107
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=95.15 E-value=0.81 Score=38.58 Aligned_cols=140 Identities=13% Similarity=0.119 Sum_probs=92.3
Q ss_pred HHhHHHHHHHHhcC----C-------CHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHH
Q 044293 6 VRETINNCVSRSQS----D-------SYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSI 74 (236)
Q Consensus 6 ~~~~i~~lv~~L~~----~-------~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~ 74 (236)
..+++..|+..|.. . +...+..++.+|+.++....+... +...++++..+...|.+.++.++..++.+
T Consensus 45 ~~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~-vl~~~~~i~~l~~sL~s~~~~~r~~vleL 123 (386)
T 2bnx_A 45 GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKT-MLETEEGILLLVRAMDPAVPNMMIDAAKL 123 (386)
T ss_dssp HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHH-HHHSSSHHHHHHHTCCTTSHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHH-HHcCcHHHHHHHHHhCCCCchHHHHHHHH
Confidence 45677777777731 1 345677899999999887555444 45556999999999999999999999988
Q ss_pred HHhhCCCCc--h-hHHhh----------hcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccc---hhhhh----hcccC
Q 044293 75 LLNLSLNPD--L-KQSLA----------SMETIYRLNWIIQSSSSQETVKLASSLICSLAMLD---KNKAR----FGVAG 134 (236)
Q Consensus 75 L~~l~~~~~--~-~~~i~----------~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~---~~~~~----i~~~g 134 (236)
|..+|..+. + ...+. +..--.+++..++.+.+.+.+..+...+-.+.... +.|.+ +...|
T Consensus 124 L~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~G 203 (386)
T 2bnx_A 124 LSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLG 203 (386)
T ss_dssp HHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
Confidence 888887664 4 23221 22345567777775546777777776666554443 23333 33455
Q ss_pred cHHHHHHhhcCCC
Q 044293 135 TVQVLVKAVSAPS 147 (236)
Q Consensus 135 ~i~~Lv~lL~~~~ 147 (236)
+..++.-|+...
T Consensus 204 -L~~il~~Lr~~~ 215 (386)
T 2bnx_A 204 -LHQVLQELREIE 215 (386)
T ss_dssp -HHHHHHHHTTCC
T ss_pred -hHHHHHHHhccC
Confidence 555566666543
No 108
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=94.97 E-value=1.3 Score=36.51 Aligned_cols=185 Identities=13% Similarity=0.064 Sum_probs=130.3
Q ss_pred HHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCc-hhH----HhhhcccHHHHHHHHhcc-CCHHHHHHHHH
Q 044293 42 YRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPD-LKQ----SLASMETIYRLNWIIQSS-SSQETVKLASS 115 (236)
Q Consensus 42 ~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~-~~~----~i~~~g~i~~L~~lL~~~-~~~~~~~~a~~ 115 (236)
..+.+... |.+..|+..|..-+-+.+..+..+..++-.... ++. .+.. - |-+++.|-.| +++++-.++-.
T Consensus 70 L~~ei~~~-dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~-peil~~L~~gYe~~diAl~~G~ 145 (341)
T 1upk_A 70 LAQELYNS-GLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--Q-QNILFMLLKGYESPEIALNCGI 145 (341)
T ss_dssp HHHHHHHH-SHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--C-THHHHHHHHGGGSTTTHHHHHH
T ss_pred HHHHHHHh-CHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--C-HHHHHHHHHhhccchhHhHHHH
Confidence 34566676 999999999988888999988888888765443 232 2222 1 2233333222 25677788888
Q ss_pred HHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhc-CCCChHHHHHh---CcHHHHHHHhcCCChhh
Q 044293 116 LICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQ-FHGNSTLAVRA---GAVSELIHLIGSTEAED 191 (236)
Q Consensus 116 ~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~-~~~~~~~~~~~---g~i~~lv~ll~~~~~~~ 191 (236)
.|..+..++.....+...+.+..+.++++.++.++...|..++..|-. ++.-...+... ..+...-+||.+++ --
T Consensus 146 mLRecir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~N-YV 224 (341)
T 1upk_A 146 MLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSEN-YV 224 (341)
T ss_dssp HHHHHHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSS-HH
T ss_pred HHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCc-ch
Confidence 899999998888878887888999999999999999999998877654 44444444443 24566777888774 67
Q ss_pred HHHHHHHHHHHHcCChhhHHH---HHhcCCcHHHHHHHhhCCc
Q 044293 192 LAGTSLAVLNLLARFDEGMIA---LTKTDQIVSLMVDVLKGRS 231 (236)
Q Consensus 192 ~~~~a~~~L~~l~~~~~~~~~---i~~~g~~i~~lv~~l~~~~ 231 (236)
.+.+++..|..+..+..+..- ++..+.-+..+..+|++.+
T Consensus 225 TkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~s 267 (341)
T 1upk_A 225 TKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKS 267 (341)
T ss_dssp HHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSC
T ss_pred hHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCch
Confidence 889999999998877665444 4444433566667777655
No 109
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=94.84 E-value=1.5 Score=36.85 Aligned_cols=155 Identities=15% Similarity=0.138 Sum_probs=99.3
Q ss_pred HHHHHHHHhc-CChHHHHHHHhccCcHHHHHhhccC----C-------ChHHHHHHHHHHHhhCCCCchhHHhh-hcccH
Q 044293 28 ALQTLASITR-VSPQYRSLLAQTDGAISTLLGLSKS----S-------SPIIRTLSLSILLNLSLNPDLKQSLA-SMETI 94 (236)
Q Consensus 28 a~~~L~~l~~-~~~~~~~~i~~~~g~i~~Lv~lL~~----~-------~~~~~~~a~~~L~~l~~~~~~~~~i~-~~g~i 94 (236)
.+..|+.... +...+-+.|. . +|+..|+..|.. . +...+..++.+|..+..+..+...+. ..+++
T Consensus 25 ~L~~L~v~Lrt~~~~Wv~~F~-~-~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i 102 (386)
T 2bnx_A 25 CLESLRVSLNNNPVSWVQTFG-A-EGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGI 102 (386)
T ss_dssp HHHHHHHHHHHSCHHHHHHHH-H-HHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHH
T ss_pred HHHHHhHHHhcCCcHHHHHHH-H-hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHH
Confidence 4445544333 3345556675 5 789999988742 1 34567788899999988888866666 56789
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhcccch--h-hhhh----------cccCcHHHHHHhhcCC-CcHHHHHHHHHHHH
Q 044293 95 YRLNWIIQSSSSQETVKLASSLICSLAMLDK--N-KARF----------GVAGTVQVLVKAVSAP-SNPAGHHLLSSLAE 160 (236)
Q Consensus 95 ~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~--~-~~~i----------~~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~~ 160 (236)
..+...|.+. ++.++..++..|..+|..++ + -..+ .+..-+.++|..+... +.+....++..+-.
T Consensus 103 ~~l~~sL~s~-~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~ 181 (386)
T 2bnx_A 103 LLLVRAMDPA-VPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINA 181 (386)
T ss_dssp HHHHHTCCTT-SHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCC-CchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9999999877 78999999888888887654 2 1111 2344667788888754 33444454444555
Q ss_pred HhcCCCC-------hHHHHHhCcHHHHHHHhcC
Q 044293 161 LVQFHGN-------STLAVRAGAVSELIHLIGS 186 (236)
Q Consensus 161 L~~~~~~-------~~~~~~~g~i~~lv~ll~~ 186 (236)
+..+++. |..+...|..+.+ .-|+.
T Consensus 182 lv~~~~dl~~R~~LR~Ef~~~GL~~il-~~Lr~ 213 (386)
T 2bnx_A 182 LITPAEELDFRVHIRSELMRLGLHQVL-QELRE 213 (386)
T ss_dssp HHTTCSCHHHHHHHHHHHHHTTHHHHH-HHHTT
T ss_pred HHCCCCCHHHHHHHHHHHHHCChHHHH-HHHhc
Confidence 5555554 3344455655554 45544
No 110
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=94.79 E-value=1 Score=42.42 Aligned_cols=131 Identities=10% Similarity=0.007 Sum_probs=78.8
Q ss_pred CChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHH---h--ccCCHHHHHHHHHHHHHhcccch-hhhhhcccCcH
Q 044293 63 SSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWII---Q--SSSSQETVKLASSLICSLAMLDK-NKARFGVAGTV 136 (236)
Q Consensus 63 ~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL---~--~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~g~i 136 (236)
.+-..++.++.++..++....... ...++.++.++ . .. ++.++..++++|..++..-. +...+ ...+
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~-~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl 548 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKL-NVKLLGTALETMGSYCNWLMENPAYI--PPAI 548 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTS-CHHHHHHHHHHHHHTHHHHC----CH--HHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCcccc-CHHHHHHHHHHHHHHHHHHhcCHHHH--HHHH
Confidence 345678888888888876533211 13444444443 2 22 68899999999998876432 12111 3566
Q ss_pred HHHHHhhcCCCcHHHHHHHHHHHHHhcCCCChHHHHH--hCcHHHHHHHhcCCC-hhhHHHHHHHHHHHHcC
Q 044293 137 QVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVR--AGAVSELIHLIGSTE-AEDLAGTSLAVLNLLAR 205 (236)
Q Consensus 137 ~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~--~g~i~~lv~ll~~~~-~~~~~~~a~~~L~~l~~ 205 (236)
+.|+..|. +++...|+.++.++|... +..+.. ...+..+.+++..++ +...+..++.++..++.
T Consensus 549 ~~l~~~l~---~~v~~~A~~al~~l~~~~--~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~ 615 (971)
T 2x1g_F 549 NLLVRGLN---SSMSAQATLGLKELCRDC--QLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMS 615 (971)
T ss_dssp HHHHHHHH---SSCHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC---hHHHHHHHHHHHHHHHHH--HHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHH
Confidence 77777773 678999999999999532 333321 345555666676531 24566677777776653
No 111
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=94.11 E-value=1.4 Score=41.23 Aligned_cols=154 Identities=14% Similarity=0.065 Sum_probs=94.3
Q ss_pred cCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhc---cCCChHHHHHHHHHHHhhCCCCchhHHhhhcccH
Q 044293 18 QSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLS---KSSSPIIRTLSLSILLNLSLNPDLKQSLASMETI 94 (236)
Q Consensus 18 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL---~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i 94 (236)
.+.+...++.++.++..++..-... +. ..++.++..+ ..+++.++..+++++..++..-....... ...+
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~-----~~-~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l-~~vl 531 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVN-----YS-DVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMI-NSVL 531 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSS-----CC-SHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHH-TTTH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCch-----hh-HHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHH-HHHH
Confidence 4567778888888898888652211 11 3344444332 33578899999999998775311111222 3678
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcc--cCcHHHHHHhhcCC--CcHHHHHHHHHHHHHhcCCC--Ch
Q 044293 95 YRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGV--AGTVQVLVKAVSAP--SNPAGHHLLSSLAELVQFHG--NS 168 (236)
Q Consensus 95 ~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~--~g~i~~Lv~lL~~~--~~~~~~~a~~aL~~L~~~~~--~~ 168 (236)
+.++..|+ ++.++..|+.++.+++.. .+..+.. ...++.|..++.++ +...+.....++..+...-+ ..
T Consensus 532 ~~l~~~l~---~~~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~ 606 (963)
T 2x19_B 532 PLVLHALG---NPELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEI 606 (963)
T ss_dssp HHHHHHTT---CGGGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHhC---CchHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHH
Confidence 88888885 368899999999999863 3344432 34555556666653 45677888888888876432 22
Q ss_pred HHHHHhCcHHHHHHHh
Q 044293 169 TLAVRAGAVSELIHLI 184 (236)
Q Consensus 169 ~~~~~~g~i~~lv~ll 184 (236)
...+ ...++++...+
T Consensus 607 ~~~~-~~l~~~l~~~l 621 (963)
T 2x19_B 607 LKNL-HSLISPYIQQL 621 (963)
T ss_dssp HHHH-HHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHH
Confidence 2221 34555555544
No 112
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=93.54 E-value=0.24 Score=35.49 Aligned_cols=75 Identities=8% Similarity=0.112 Sum_probs=58.9
Q ss_pred hHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-ChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhC
Q 044293 4 PRVRETINNCVSRSQSDSYEDQQKALQTLASITRV-SPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLS 79 (236)
Q Consensus 4 ~~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~ 79 (236)
....+.+..+.+.|++.++.++..|+..|-.+..+ +......+... ..+..|+.+++..++.+++.++..+..-+
T Consensus 38 ~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~-~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 38 TGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSR-DFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp THHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSH-HHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhH-HHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 34577889999999999999999999988888776 34556666665 78888888887778899988888887543
No 113
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=93.12 E-value=0.55 Score=33.95 Aligned_cols=74 Identities=14% Similarity=0.112 Sum_probs=61.0
Q ss_pred hHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-ChHHHHHHHhccCcHHHHHhhccC------CChHHHHHHHHHHH
Q 044293 4 PRVRETINNCVSRSQSDSYEDQQKALQTLASITRV-SPQYRSLLAQTDGAISTLLGLSKS------SSPIIRTLSLSILL 76 (236)
Q Consensus 4 ~~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~~g~i~~Lv~lL~~------~~~~~~~~a~~~L~ 76 (236)
...++.+..+.+.|++.++.++..|+..|-.+..+ +..+...+... .++..|+.+++. .++.+++.++..+.
T Consensus 34 ~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~-~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~ 112 (148)
T 1mhq_A 34 NGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKF-RFLNELIKVLSPKYLGSWATGKVKGRVIEILF 112 (148)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSH-HHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhH-HHHHHHHHHHccccCCCCCCHHHHHHHHHHHH
Confidence 34577889999999999999999999999988887 56677888876 899999999874 36788888888877
Q ss_pred hh
Q 044293 77 NL 78 (236)
Q Consensus 77 ~l 78 (236)
.-
T Consensus 113 ~W 114 (148)
T 1mhq_A 113 SW 114 (148)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 114
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=93.10 E-value=0.39 Score=35.34 Aligned_cols=72 Identities=10% Similarity=0.129 Sum_probs=58.4
Q ss_pred HHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-ChHHHHHHHhccCcHHHHHhhccC-CChHHHHHHHHHHHh
Q 044293 5 RVRETINNCVSRSQSDSYEDQQKALQTLASITRV-SPQYRSLLAQTDGAISTLLGLSKS-SSPIIRTLSLSILLN 77 (236)
Q Consensus 5 ~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~ 77 (236)
..++.+..+.+.|++.++.++..|+..|-.+..+ ...+...+... ..+..|+.+++. .++.+++.++..+..
T Consensus 49 ~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~-~Fl~el~~l~~~~~~~~Vk~kil~li~~ 122 (163)
T 1x5b_A 49 GAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSR-DFATEVRAVIKNKAHPKVCEKLKSLMVE 122 (163)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSH-HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhH-HHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence 4577888999999999999999999999888877 45667777765 788888888865 567888888887764
No 115
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=92.73 E-value=0.29 Score=43.40 Aligned_cols=155 Identities=14% Similarity=0.162 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhh-hcccHHHHHHH
Q 044293 22 YEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLA-SMETIYRLNWI 100 (236)
Q Consensus 22 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~-~~g~i~~L~~l 100 (236)
.++|+.++.+|..+ .+=++- . .++..++..+..+.=+++-.++-.|.-+ ++.+. =.+.++.++.-
T Consensus 242 APVRETaAQtLGaL-~hLp~e------~-~IL~qLV~~l~~~~WEVRHGGLLGLKYL------~DLL~~Ld~Vv~aVL~G 307 (800)
T 3oc3_A 242 APVRDAAAYLLSRI-YPLIGP------N-DIIEQLVGFLDSGDWQVQFSGLIALGYL------KEFVEDKDGLCRKLVSL 307 (800)
T ss_dssp CHHHHHHHHHHHHH-TTTSCS------C-CHHHHHTTGGGCSCHHHHHHHHHHHHHT------GGGCCCHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHH-HhCChh------H-HHHHHHHhhcCCCCeeehhhhHHHHHHH------HHHHHHHHHHHHHHHhh
Confidence 56888888888888 542221 3 5677777666666668888888888877 22221 25677778888
Q ss_pred HhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhc----CCCc--HHHHHHHHHHHHHhcCCCChHHHHHh
Q 044293 101 IQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVS----APSN--PAGHHLLSSLAELVQFHGNSTLAVRA 174 (236)
Q Consensus 101 L~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~----~~~~--~~~~~a~~aL~~L~~~~~~~~~~~~~ 174 (236)
|+.. ++|++..||.+|.-++ ..+.++.++..++ +-++ ......+..|+.|+..+.+. ....
T Consensus 308 L~D~-DDDVRAVAAetLiPIA----------~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a--~~dp 374 (800)
T 3oc3_A 308 LSSP-DEDIKLLSAELLCHFP----------ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL--SIPP 374 (800)
T ss_dssp TTCS-SHHHHHHHHHHHTTSC----------CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC--CCCS
T ss_pred cCCc-ccHHHHHHHHHhhhhc----------chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc--ccCh
Confidence 8877 8999999999999888 2244555555554 3221 23455667788888876421 1123
Q ss_pred CcHHHHHHHhcCCChhhHHHHHHHHHHHHc
Q 044293 175 GAVSELIHLIGSTEAEDLAGTSLAVLNLLA 204 (236)
Q Consensus 175 g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~ 204 (236)
..+|.|...+.++ -..++..++.+|..+.
T Consensus 375 ~LVPRL~PFLRHt-ITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 375 ERLKDIFPCFTSP-VPEVRTSILNMVKNLS 403 (800)
T ss_dssp GGGGGTGGGGTCS-SHHHHHHHHHHTTTCC
T ss_pred HHHHHHHhhhcCC-cHHHHHHHHHHHHHHH
Confidence 7788899999887 3678888888887766
No 116
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=92.43 E-value=1.5 Score=41.87 Aligned_cols=153 Identities=11% Similarity=0.120 Sum_probs=86.7
Q ss_pred hHHHHHHHHh----cC--CCHHHHHHHHHHHHHHhcC-ChHHHHHHHhccCcHHHHHhhccCC---Ch--HHHHHHHHHH
Q 044293 8 ETINNCVSRS----QS--DSYEDQQKALQTLASITRV-SPQYRSLLAQTDGAISTLLGLSKSS---SP--IIRTLSLSIL 75 (236)
Q Consensus 8 ~~i~~lv~~L----~~--~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~~g~i~~Lv~lL~~~---~~--~~~~~a~~~L 75 (236)
+.++.++..+ .. .+...++.++++++.++.. .++.-..+.. .+++.|+.++.+. ++ .++..+++++
T Consensus 447 ~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~--~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~l 524 (1023)
T 4hat_C 447 DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVV--TVIKDLLDLCVKKRGKDNKAVVASDIMYVV 524 (1023)
T ss_dssp HHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH--HHHHHHHHHHHHCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHH--HHHHHHHHhhhccccCcchHHHHHHHHHHH
Confidence 3444455554 32 5788999999999998865 2221223332 4789999987641 22 3344555666
Q ss_pred HhhCCCCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcc------cCcHHHHHHhhc----C
Q 044293 76 LNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGV------AGTVQVLVKAVS----A 145 (236)
Q Consensus 76 ~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~------~g~i~~Lv~lL~----~ 145 (236)
...+.-=....... ...+..|+..+... ++.++..|++++.++|.. .+..+.. ...++.++..+. .
T Consensus 525 Gry~~wl~~~~~~L-~~vl~~L~~~l~~~-~~~v~~~A~~al~~l~~~--c~~~l~~~~~~e~~p~~~~il~~l~~~~~~ 600 (1023)
T 4hat_C 525 GQYPRFLKAHWNFL-RTVILKLFEFMHET-HEGVQDMACDTFIKIVQK--CKYHFVIQQPRESEPFIQTIIRDIQKTTAD 600 (1023)
T ss_dssp HTCHHHHHHCHHHH-HHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHH--HTHHHHSCCTTCSSCHHHHHHHTHHHHHTT
T ss_pred HHHHHHHhccHHHH-HHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHHH--HHHHhhccCCCCCchhHHHHHHHHHHHHHh
Confidence 65433111101110 12333344444434 678999999999999984 3333421 224555554443 3
Q ss_pred CCcHHHHHHHHHHHHHhcCCC
Q 044293 146 PSNPAGHHLLSSLAELVQFHG 166 (236)
Q Consensus 146 ~~~~~~~~a~~aL~~L~~~~~ 166 (236)
-++........+++.+...-.
T Consensus 601 l~~~~~~~lyeai~~vi~~~~ 621 (1023)
T 4hat_C 601 LQPQQVHTFYKACGIIISEER 621 (1023)
T ss_dssp SCHHHHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHHHHhCC
Confidence 345566777788877777543
No 117
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=92.39 E-value=0.63 Score=33.67 Aligned_cols=73 Identities=12% Similarity=0.138 Sum_probs=59.2
Q ss_pred HHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-ChHHHHHHHhccCcHHHHHhhccC------CChHHHHHHHHHHHh
Q 044293 5 RVRETINNCVSRSQSDSYEDQQKALQTLASITRV-SPQYRSLLAQTDGAISTLLGLSKS------SSPIIRTLSLSILLN 77 (236)
Q Consensus 5 ~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~~g~i~~Lv~lL~~------~~~~~~~~a~~~L~~ 77 (236)
..++.+..+.+.+++.++.++..|+..|-.+..+ +..+...|... .++..|+.+++. .++.+++.++..+..
T Consensus 45 ~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~-~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~ 123 (149)
T 3g2s_A 45 GPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKF-RFLNELIKVVSPKYLGSRTSEKVKNKILELLYS 123 (149)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSH-HHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhH-HHHHHHHHHHcccccCCCCCHHHHHHHHHHHHH
Confidence 4577889999999999999999999999888876 34566777776 889999999863 467888888888875
Q ss_pred h
Q 044293 78 L 78 (236)
Q Consensus 78 l 78 (236)
-
T Consensus 124 W 124 (149)
T 3g2s_A 124 W 124 (149)
T ss_dssp H
T ss_pred H
Confidence 4
No 118
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=92.00 E-value=0.58 Score=34.71 Aligned_cols=73 Identities=12% Similarity=0.157 Sum_probs=59.3
Q ss_pred HHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-ChHHHHHHHhccCcHHHHHhhccC------CChHHHHHHHHHHHh
Q 044293 5 RVRETINNCVSRSQSDSYEDQQKALQTLASITRV-SPQYRSLLAQTDGAISTLLGLSKS------SSPIIRTLSLSILLN 77 (236)
Q Consensus 5 ~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~~g~i~~Lv~lL~~------~~~~~~~~a~~~L~~ 77 (236)
..++.+..|.+.+++.++.++..|+..|-.+..+ +..+...+... ..+..|+.+++. .++.+++.++..+..
T Consensus 47 ~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~-~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~ 125 (171)
T 1juq_A 47 GPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKF-RFLNELIKVVSPKYLGDRVSEKVKTKVIELLYS 125 (171)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSH-HHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhH-HHHHHHHHHhccccCCCCCCHHHHHHHHHHHHH
Confidence 4577888999999999999999999999888887 35567778776 899999999863 357888888888875
Q ss_pred h
Q 044293 78 L 78 (236)
Q Consensus 78 l 78 (236)
-
T Consensus 126 W 126 (171)
T 1juq_A 126 W 126 (171)
T ss_dssp H
T ss_pred H
Confidence 3
No 119
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=91.98 E-value=0.13 Score=40.59 Aligned_cols=101 Identities=12% Similarity=0.126 Sum_probs=52.4
Q ss_pred HHHhcCCCHHHHHHHHHHH-----HHHhcC-ChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHH-----HHhhCCCC
Q 044293 14 VSRSQSDSYEDQQKALQTL-----ASITRV-SPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSI-----LLNLSLNP 82 (236)
Q Consensus 14 v~~L~~~~~~~~~~a~~~L-----~~l~~~-~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~-----L~~l~~~~ 82 (236)
..+++++++.++..++..| ..+..+ +...|...... -..+.|..+++.+++.+|..++.. +..+..++
T Consensus 80 ~~L~~D~~~~VR~~aA~~L~~~~L~~ll~D~d~~VR~~aA~~-l~~~~L~~L~~D~d~~VR~~aA~~l~~~~l~~l~~D~ 158 (244)
T 1lrv_A 80 TPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADR-LPLEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDE 158 (244)
T ss_dssp GGGTTCSSHHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHHH-SCTGGGGGGTTCSSHHHHHHHHHHSCGGGGGGTTTCS
T ss_pred HHHccCcCHHHHHHHHHHCCHHHHHHHHcCCCHHHHHHHHHh-CCHHHHHHHHcCCCHHHHHHHHHhcCHHHHHHHHcCC
Confidence 3444566666666665432 222222 34455555543 333445555666667776665552 22234444
Q ss_pred c--hhHHhhhcccHHHHHHHHhccCCHHHHHHHHHH
Q 044293 83 D--LKQSLASMETIYRLNWIIQSSSSQETVKLASSL 116 (236)
Q Consensus 83 ~--~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~ 116 (236)
+ .|..++..-.-+.+..+++.. +.+++..++..
T Consensus 159 d~~VR~~aa~~l~~~ll~~ll~D~-d~~VR~aaa~~ 193 (244)
T 1lrv_A 159 DRQVRKLVAKRLPEESLGLMTQDP-EPEVRRIVASR 193 (244)
T ss_dssp CHHHHHHHHHHSCGGGGGGSTTCS-SHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHh
Confidence 3 254454433334444555665 78888877765
No 120
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=91.16 E-value=2 Score=40.34 Aligned_cols=177 Identities=12% Similarity=0.009 Sum_probs=101.4
Q ss_pred CCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhh--hcccHHHH
Q 044293 20 DSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLA--SMETIYRL 97 (236)
Q Consensus 20 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~--~~g~i~~L 97 (236)
+++.++..+++++..++..-..+.+ ... .+++.|+..|+ +.++..|+.++.+++. +.+..+. -.+.+..+
T Consensus 518 ~~~~vr~~a~~~l~~~~~~l~~~~~-~l~--~vl~~l~~~l~---~~v~~~A~~al~~l~~--~~~~~l~p~~~~ll~~l 589 (971)
T 2x1g_F 518 LNVKLLGTALETMGSYCNWLMENPA-YIP--PAINLLVRGLN---SSMSAQATLGLKELCR--DCQLQLKPYADPLLNAC 589 (971)
T ss_dssp SCHHHHHHHHHHHHHTHHHHC-----CHH--HHHHHHHHHHH---SSCHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHhcCHH-HHH--HHHHHHHHHhC---hHHHHHHHHHHHHHHH--HHHHhccccHHHHHHHH
Confidence 4788899999999988753111122 222 46777777773 6788999999999984 2334443 24577777
Q ss_pred HHHHhccC-CHHHHHHHHHHHHHhcccc--hhhhhhcccCcHHHHHHhhc----CC--CcHHHHHHHHHHHHHh---cCC
Q 044293 98 NWIIQSSS-SQETVKLASSLICSLAMLD--KNKARFGVAGTVQVLVKAVS----AP--SNPAGHHLLSSLAELV---QFH 165 (236)
Q Consensus 98 ~~lL~~~~-~~~~~~~a~~~L~~Ls~~~--~~~~~i~~~g~i~~Lv~lL~----~~--~~~~~~~a~~aL~~L~---~~~ 165 (236)
..++.++. +.+.+..+..++..++..- +.+.... ...+++++..+. .. +++.......++..|+ ..-
T Consensus 590 ~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l 668 (971)
T 2x1g_F 590 HASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYL-DIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSL 668 (971)
T ss_dssp HHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHH-HHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHH-HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhc
Confidence 77787642 5678888888877765421 2222222 244455554443 22 2223333333333332 211
Q ss_pred CC-----------hH--HHHHhCcHHHHHHHhcCC-ChhhHHHHHHHHHHHHcC
Q 044293 166 GN-----------ST--LAVRAGAVSELIHLIGST-EAEDLAGTSLAVLNLLAR 205 (236)
Q Consensus 166 ~~-----------~~--~~~~~g~i~~lv~ll~~~-~~~~~~~~a~~~L~~l~~ 205 (236)
.. .. .-.....+|.+..++... ++..+.+.++.++..++.
T Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~ 722 (971)
T 2x1g_F 669 NTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAIT 722 (971)
T ss_dssp TC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 00 01 112356788888877542 235788999999888764
No 121
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=90.05 E-value=2.3 Score=36.74 Aligned_cols=96 Identities=15% Similarity=0.098 Sum_probs=66.0
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhH
Q 044293 7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQ 86 (236)
Q Consensus 7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~ 86 (236)
.+.|..++++..+++..+|..|.+.|-.+|.+ ++ +. .++..|+++|+.+++.-...+-.+|..+-..+
T Consensus 64 ~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~---i~---kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~D---- 131 (507)
T 3u0r_A 64 DSAINAQLDLCEDEDVSIRRQAIKELPQFATG--EN---LP---RVADILTQLLQTDDSAEFNLVNNALLSIFKMD---- 131 (507)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TC---HH---HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hh---hh---hHHHHHHHHHhccchHHHHHHHHHHHHHHhcC----
Confidence 46788888999889999999999999999986 23 22 46778899999887654444444444332211
Q ss_pred HhhhcccHHHHHHHHhccCCHHHHHHHHHHHH
Q 044293 87 SLASMETIYRLNWIIQSSSSQETVKLASSLIC 118 (236)
Q Consensus 87 ~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~ 118 (236)
-.+.+..+...+.++ ++.+|+.+...|.
T Consensus 132 ---pk~tl~~lf~~i~~~-~e~~Rer~lkFi~ 159 (507)
T 3u0r_A 132 ---AKGTLGGLFSQILQG-EDIVRERAIKFLS 159 (507)
T ss_dssp ---HHHHHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHccc-chHHHHHHHHHHH
Confidence 134555666666666 6788888777775
No 122
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=89.66 E-value=7.2 Score=31.62 Aligned_cols=147 Identities=11% Similarity=0.110 Sum_probs=91.3
Q ss_pred HHHHHHHhcCC------CHHHHHHHHHHHHHHhcCChHHHHHHHhc-cCcHHHHHhhccCCChHHHHHHHHHHHhhCC-C
Q 044293 10 INNCVSRSQSD------SYEDQQKALQTLASITRVSPQYRSLLAQT-DGAISTLLGLSKSSSPIIRTLSLSILLNLSL-N 81 (236)
Q Consensus 10 i~~lv~~L~~~------~~~~~~~a~~~L~~l~~~~~~~~~~i~~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~ 81 (236)
.....++++++ +.+....|+..|..++.+. ..=..|+++ ...+..|+ +.....+.+++.|+++|..+-. +
T Consensus 24 F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi-~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNN 101 (315)
T 3qml_C 24 FKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDY-KHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNN 101 (315)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSH-HHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhH-HhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccC
Confidence 34455566555 3445678999999999873 444555553 13344444 2344566889999999996555 4
Q ss_pred CchhHHhhh--cccHHHHHHHHhc----c--CCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCC--CcHHH
Q 044293 82 PDLKQSLAS--METIYRLNWIIQS----S--SSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAP--SNPAG 151 (236)
Q Consensus 82 ~~~~~~i~~--~g~i~~L~~lL~~----~--~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~ 151 (236)
|.....|.+ ...+..+..-|.. + ....+.+.-+++|-.|..++ ..+ ...++..|.+++... ++..+
T Consensus 102 P~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~---~~F-~~~~m~~L~~ly~~~~~d~~~k 177 (315)
T 3qml_C 102 PPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTS---EDL-PIYSTVVLQNVYERNNKDKQLQ 177 (315)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCS---TTC---CCHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcCh---Hhh-hhccHHHHHHHHccCCCCHHHH
Confidence 555555553 4666666655543 1 14466777888888888876 223 245678888888766 67777
Q ss_pred HHHHHHHHHHh
Q 044293 152 HHLLSSLAELV 162 (236)
Q Consensus 152 ~~a~~aL~~L~ 162 (236)
..++..+..+=
T Consensus 178 ~Kvl~li~d~f 188 (315)
T 3qml_C 178 IKVLELISKIL 188 (315)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 77776664443
No 123
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=89.50 E-value=3 Score=29.71 Aligned_cols=76 Identities=16% Similarity=0.168 Sum_probs=51.8
Q ss_pred HHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-ChHHHHHHHhccCcHHHHHhhccCCC--------hHHHHHHHHHHH
Q 044293 6 VRETINNCVSRSQSDSYEDQQKALQTLASITRV-SPQYRSLLAQTDGAISTLLGLSKSSS--------PIIRTLSLSILL 76 (236)
Q Consensus 6 ~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~~g~i~~Lv~lL~~~~--------~~~~~~a~~~L~ 76 (236)
..+..+.|.+.|+..++.+..+|+..|..++.+ ++.++..+.+....|..+..+=-.++ ..+|..|-.++.
T Consensus 47 ~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ 126 (140)
T 1vdy_A 47 VKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETIS 126 (140)
T ss_dssp HHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHH
Confidence 478889999999999999999999999999966 56677777776344444444322222 255666666665
Q ss_pred hhCCC
Q 044293 77 NLSLN 81 (236)
Q Consensus 77 ~l~~~ 81 (236)
.|...
T Consensus 127 ll~d~ 131 (140)
T 1vdy_A 127 AIFSE 131 (140)
T ss_dssp HHTCC
T ss_pred HHhCc
Confidence 55443
No 124
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=89.00 E-value=5.3 Score=37.99 Aligned_cols=181 Identities=13% Similarity=0.029 Sum_probs=99.6
Q ss_pred HHHHhc-CCCHHHHHHHHHHHHHHhcC-----ChHHHHHHHhccCcHHHHHhhccCC-----ChHHHHHHHHHHHhhCCC
Q 044293 13 CVSRSQ-SDSYEDQQKALQTLASITRV-----SPQYRSLLAQTDGAISTLLGLSKSS-----SPIIRTLSLSILLNLSLN 81 (236)
Q Consensus 13 lv~~L~-~~~~~~~~~a~~~L~~l~~~-----~~~~~~~i~~~~g~i~~Lv~lL~~~-----~~~~~~~a~~~L~~l~~~ 81 (236)
+...|. +.++.+|..|+..|.+.... .++.+..+.+ ..+..+...-..+ ++.++...+.++..++..
T Consensus 53 l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir~--~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~ 130 (1049)
T 3m1i_C 53 ADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGIRN--FVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQ 130 (1049)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHH--HHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHHHH--HHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHH
Confidence 334442 34566666677777665432 2334444443 2444444332111 345666666777766654
Q ss_pred C--chhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchh--------------hhhhcc--cCcHHHHHHhh
Q 044293 82 P--DLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKN--------------KARFGV--AGTVQVLVKAV 143 (236)
Q Consensus 82 ~--~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~--------------~~~i~~--~g~i~~Lv~lL 143 (236)
+ +.. .+.++.|+..++ . ++..++.+..+|..++..-.. +..+.. ...++.+...+
T Consensus 131 ~~p~~W-----p~ll~~L~~~~~-~-~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l 203 (1049)
T 3m1i_C 131 EWPQNW-----PEFIPELIGSSS-S-SVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVL 203 (1049)
T ss_dssp HTTTTC-----TTHHHHHHHHHT-T-CHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCcccc-----hHHHHHHHHHHc-c-ChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 221 467888888886 4 566677788888877743110 011222 22334444555
Q ss_pred cC-CCcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC
Q 044293 144 SA-PSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR 205 (236)
Q Consensus 144 ~~-~~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~ 205 (236)
.+ .++.++..++.++.....+-+. ..+.+...++.+.+.+.. .+++...|+.+|..+..
T Consensus 204 ~~~~~~~~~~~aL~~l~~~l~wi~~-~~~~~~~ll~~l~~~~l~--~~~~~~~a~~~L~~i~~ 263 (1049)
T 3m1i_C 204 EQGSSSSLIVATLESLLRYLHWIPY-RYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSN 263 (1049)
T ss_dssp HHCCCHHHHHHHHHHHHHHTTTSCT-HHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHhhCCH-HHHhhhhHHHHHHHHhCC--CHhHHHHHHHHHHHHHh
Confidence 43 3566788899999887765443 223445566665532222 25677778888777664
No 125
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=88.83 E-value=5.1 Score=38.11 Aligned_cols=139 Identities=11% Similarity=0.101 Sum_probs=78.7
Q ss_pred CCHHHHHHHHHHHHHHhcCChHH-HHHHHhccCcHHHHHhhccC-----CChHHHHHHHHHHHhhCCCCchhHHhhhccc
Q 044293 20 DSYEDQQKALQTLASITRVSPQY-RSLLAQTDGAISTLLGLSKS-----SSPIIRTLSLSILLNLSLNPDLKQSLASMET 93 (236)
Q Consensus 20 ~~~~~~~~a~~~L~~l~~~~~~~-~~~i~~~~g~i~~Lv~lL~~-----~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~ 93 (236)
.+...+..++.++..++..-... ...+.. .+++.|+.+... +.+.++..+++++...+..-....... ...
T Consensus 465 ~~W~~~eaal~algsia~~~~~~~e~~~l~--~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l-~~v 541 (1049)
T 3m1i_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVV--TVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL-RTV 541 (1049)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHH--HHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHH-HHH
T ss_pred CCHHHHHHHHHHHHHHhcccCchhhHHHHH--HHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHH-HHH
Confidence 56778888999999887542221 112221 456666664332 123334456777776553211111111 246
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhc--c----cCcHHHHH----HhhcCCCcHHHHHHHHHHHHHhc
Q 044293 94 IYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFG--V----AGTVQVLV----KAVSAPSNPAGHHLLSSLAELVQ 163 (236)
Q Consensus 94 i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~--~----~g~i~~Lv----~lL~~~~~~~~~~a~~aL~~L~~ 163 (236)
++.++..+.+. ++.++..|+.++.+++... +..+. . ...++.++ .++..-+.........++..+..
T Consensus 542 l~~ll~~l~~~-~~~V~~~A~~al~~l~~~~--~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~ 618 (1049)
T 3m1i_C 542 ILKLFEFMHET-HEGVQDMACDTFIKIVQKC--KYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIIS 618 (1049)
T ss_dssp HHHHHHHTTSS-CHHHHHHHHHHHHHHHHHH--THHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHHHHH--HHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 66777777766 7999999999999999843 33332 0 13344444 44444444455566677766665
Q ss_pred C
Q 044293 164 F 164 (236)
Q Consensus 164 ~ 164 (236)
.
T Consensus 619 ~ 619 (1049)
T 3m1i_C 619 E 619 (1049)
T ss_dssp T
T ss_pred c
Confidence 3
No 126
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=87.96 E-value=1.5 Score=33.94 Aligned_cols=73 Identities=14% Similarity=0.157 Sum_probs=58.1
Q ss_pred HHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-ChHHHHHHHhccCcHHHHHhhccC-CChHHHHHHHHHHHhhC
Q 044293 6 VRETINNCVSRSQSDSYEDQQKALQTLASITRV-SPQYRSLLAQTDGAISTLLGLSKS-SSPIIRTLSLSILLNLS 79 (236)
Q Consensus 6 ~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~ 79 (236)
..+.+..|.+.|++.++.++..|+..|-.+..+ +......|... ..+..|+.+++. .++.+++.++..+..-+
T Consensus 43 ~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~-~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 43 AKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANK-QTMEELKDLLKRQVEVNVRNKILYLIQAWA 117 (226)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccH-HHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 577899999999999999999999999888876 44466677765 788888888754 46788888888887643
No 127
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=86.80 E-value=6.7 Score=30.57 Aligned_cols=139 Identities=9% Similarity=0.016 Sum_probs=83.4
Q ss_pred HHHHHh-cCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhc-cCCChHHHHHHHHHHHhhCC--CCchhHH
Q 044293 12 NCVSRS-QSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLS-KSSSPIIRTLSLSILLNLSL--NPDLKQS 87 (236)
Q Consensus 12 ~lv~~L-~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~~a~~~L~~l~~--~~~~~~~ 87 (236)
.+...| +++..++|..|+..|..+ ... . ..++.+-..+ ..++=.+++.++.++..++. +++.
T Consensus 74 ~la~~L~~~~~deVR~~Av~lLg~~-~~~---------~-~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~--- 139 (240)
T 3l9t_A 74 KLAFLAYQSDVYQVRMYAVFLFGYL-SKD---------K-EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK--- 139 (240)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHT-TTS---------H-HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT---
T ss_pred HHHHHHHhCcchHHHHHHHHHHHhc-cCc---------H-HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH---
Confidence 344444 566677888888877666 211 1 3455555533 33444788888888877653 3331
Q ss_pred hhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcc-cCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCC-
Q 044293 88 LASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGV-AGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFH- 165 (236)
Q Consensus 88 i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~- 165 (236)
.++.+....+++ +..++..|+..+.--+.....+ .+ .-++|.|-.+..+++.-+++...++|..++..+
T Consensus 140 -----~l~~~~~W~~d~-n~~VRR~Ase~~rpW~~~~~~k---~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~P 210 (240)
T 3l9t_A 140 -----ALPIIDEWLKSS-NLHTRRAATEGLRIWTNRPYFK---ENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFP 210 (240)
T ss_dssp -----THHHHHHHHHCS-SHHHHHHHHHHTCSGGGSTTTT---TCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred -----HHHHHHHHhcCC-CHHHHHHHHHhhHHHhccchhh---cCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCH
Confidence 566777777777 8999998887765322221111 11 223455555555667778889999999999854
Q ss_pred CChHHHHH
Q 044293 166 GNSTLAVR 173 (236)
Q Consensus 166 ~~~~~~~~ 173 (236)
+-...+++
T Consensus 211 d~V~~~~~ 218 (240)
T 3l9t_A 211 DLVKIELK 218 (240)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 43444443
No 128
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=86.80 E-value=13 Score=31.14 Aligned_cols=117 Identities=9% Similarity=0.094 Sum_probs=85.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccC
Q 044293 26 QKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSS 105 (236)
Q Consensus 26 ~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~ 105 (236)
..+...|.-+..+ ...-.-|++. +||..+--..+.++.++.+.....|.+.+....-+.. --...+|.++..+....
T Consensus 261 tR~FDLL~LLmHd-SnAIDGFVk~-DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t-~L~e~LPFi~~~i~~h~ 337 (619)
T 3c2g_A 261 IRTFDLLGLLLHD-SDAIDGFVRS-DGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKT-PLENILPFLLRLIEIHP 337 (619)
T ss_dssp HHHHHHHHHHCCS-HHHHHHHHHT-THHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTS-CCTTHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhcc-cccccceeec-ccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhc-cccccchHHHHHhccCC
Confidence 3455555555554 4456778888 9999999999999999988889999887654332111 12357788888777443
Q ss_pred CHHHHHHHHHHHHHhcccch-hhhhhcccCcHHHHHHhhcC
Q 044293 106 SQETVKLASSLICSLAMLDK-NKARFGVAGTVQVLVKAVSA 145 (236)
Q Consensus 106 ~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~g~i~~Lv~lL~~ 145 (236)
+.++.-...+.|.|...+.. .|+.-...|+|+.|-+.+..
T Consensus 338 eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~k 378 (619)
T 3c2g_A 338 DDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISK 378 (619)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHT
T ss_pred CcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhh
Confidence 78999999999999988774 45554568999999988854
No 129
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=86.27 E-value=2.6 Score=40.24 Aligned_cols=111 Identities=11% Similarity=-0.071 Sum_probs=68.4
Q ss_pred HHHHHhhccC--CChHHHHHHHHHHHhhCCCCch-hHHhhhcccHHHHHHHHhccC--CH--HHHHHHHHHHHHhcccch
Q 044293 53 ISTLLGLSKS--SSPIIRTLSLSILLNLSLNPDL-KQSLASMETIYRLNWIIQSSS--SQ--ETVKLASSLICSLAMLDK 125 (236)
Q Consensus 53 i~~Lv~lL~~--~~~~~~~~a~~~L~~l~~~~~~-~~~i~~~g~i~~L~~lL~~~~--~~--~~~~~a~~~L~~Ls~~~~ 125 (236)
++.+-+.+.+ .+-..++.++.+++.++..... ...-.-...++.|+.++.... ++ -++..++++|...+..-.
T Consensus 453 ~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~ 532 (1023)
T 4hat_C 453 ISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLK 532 (1023)
T ss_dssp HHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHh
Confidence 4444444443 3557789999999999876543 222223457788888876421 12 233456677776555332
Q ss_pred hhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcC
Q 044293 126 NKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQF 164 (236)
Q Consensus 126 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~ 164 (236)
...... ...+..|+..+...++.+...|++++.++|..
T Consensus 533 ~~~~~L-~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~ 570 (1023)
T 4hat_C 533 AHWNFL-RTVILKLFEFMHETHEGVQDMACDTFIKIVQK 570 (1023)
T ss_dssp HCHHHH-HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHH-HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Confidence 111111 34455566666667788999999999999973
No 130
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=84.83 E-value=4.2 Score=29.51 Aligned_cols=73 Identities=12% Similarity=0.249 Sum_probs=56.1
Q ss_pred HHHhHHHHHHHHhc-CCCHHHHHHHHHHHHHHhcC-ChHHHHHHHhccCcHHH-HHhhccC---CChHHHHHHHHHHHhh
Q 044293 5 RVRETINNCVSRSQ-SDSYEDQQKALQTLASITRV-SPQYRSLLAQTDGAIST-LLGLSKS---SSPIIRTLSLSILLNL 78 (236)
Q Consensus 5 ~~~~~i~~lv~~L~-~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~~g~i~~-Lv~lL~~---~~~~~~~~a~~~L~~l 78 (236)
..++.+..+.+.|+ +.++.++..|+..|-.+..+ ++.....+... ..+.. |+.++.. ....+++.++..+..-
T Consensus 50 ~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~-~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W 128 (157)
T 1elk_A 50 GPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQ-DFVESVLVRTILPKNNPPTIVHDKVLNLIQSW 128 (157)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSH-HHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhH-HHHHHHHHHHhccCCCCcHHHHHHHHHHHHHH
Confidence 45778889999997 47899999999999888877 36677777775 88887 7888743 2347888888777653
No 131
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=84.25 E-value=2.3 Score=32.76 Aligned_cols=73 Identities=11% Similarity=0.084 Sum_probs=56.7
Q ss_pred HHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC-hHHHHHHHhccCcHHHHHhhccC-CChHHHHHHHHHHHhh
Q 044293 5 RVRETINNCVSRSQSDSYEDQQKALQTLASITRVS-PQYRSLLAQTDGAISTLLGLSKS-SSPIIRTLSLSILLNL 78 (236)
Q Consensus 5 ~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~l 78 (236)
...+.+..+.+.|++.++.++..|+..|-.+..+. ......+... ..+..|+.++.. .++++++.++..+..-
T Consensus 39 ~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~-~fl~~l~~l~~~~~~~~Vk~kil~li~~W 113 (220)
T 1dvp_A 39 TPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTK-ENCEMFSSFLESTPHENVRQKMLELVQTW 113 (220)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSH-HHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhH-HHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 45678888999999999999999999998888773 4456677765 788888888754 4578888887777653
No 132
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=83.83 E-value=15 Score=35.19 Aligned_cols=124 Identities=13% Similarity=0.033 Sum_probs=75.4
Q ss_pred hhccCCChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhc------cCCHHHHHHHHHHHHHhcccchhhhhhc
Q 044293 58 GLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQS------SSSQETVKLASSLICSLAMLDKNKARFG 131 (236)
Q Consensus 58 ~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~------~~~~~~~~~a~~~L~~Ls~~~~~~~~i~ 131 (236)
..++..+.+-...++.+|.|+... ..++.|..++.. +....++..|.++|..++....
T Consensus 447 ~~~~~~~~~~~~~~LkaLGN~g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p------ 510 (1056)
T 1lsh_A 447 QSSDRAKEEEIVLALKALGNAGQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDP------ 510 (1056)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCH------
T ss_pred HHHhcCChHHHHHHHHHhhccCCh----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhch------
Confidence 334555666666777888887652 345666666531 1135677778888888874321
Q ss_pred ccCcHHHHHHhhcC--CCcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCCh
Q 044293 132 VAGTVQVLVKAVSA--PSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFD 207 (236)
Q Consensus 132 ~~g~i~~Lv~lL~~--~~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~ 207 (236)
.-+-+.+.++..+ .+++++..|+..|.... +. ...+..+...+....+.++.......|.+++...
T Consensus 511 -~~v~~il~~i~~n~~e~~EvRiaA~~~Lm~t~---P~------~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~ 578 (1056)
T 1lsh_A 511 -RKVQEIVLPIFLNVAIKSELRIRSCIVFFESK---PS------VALVSMVAVRLRREPNLQVASFVYSQMRSLSRSS 578 (1056)
T ss_dssp -HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHTC---CC------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred -HHHHHHHHHHhcCCCCChHHHHHHHHHHHHHC---cC------HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcC
Confidence 1234567777744 45567766666653221 11 1334566777766445788888999999998754
No 133
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=83.82 E-value=14 Score=29.06 Aligned_cols=109 Identities=10% Similarity=0.052 Sum_probs=67.6
Q ss_pred HHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHh-------
Q 044293 5 RVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLN------- 77 (236)
Q Consensus 5 ~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~------- 77 (236)
-+.+.++.++.+-.+.+.++|+..+..|...+...++ +.- ..++.|..+|+..++.+.+.+..+..+
T Consensus 50 ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~----l~~--~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~ 123 (257)
T 3gs3_A 50 LAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVE----LLP--HVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQ 123 (257)
T ss_dssp GHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGG----GHH--HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHH----HHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3466777777766677888888888888888755332 222 468888888888888777766655444
Q ss_pred -hCCCCchh---HHhh-h-cccHHHHHHHHhccCCHHHHHHHHHHHHHh
Q 044293 78 -LSLNPDLK---QSLA-S-METIYRLNWIIQSSSSQETVKLASSLICSL 120 (236)
Q Consensus 78 -l~~~~~~~---~~i~-~-~g~i~~L~~lL~~~~~~~~~~~a~~~L~~L 120 (236)
++.++..- ...= . ...=..++.+++++ +..++.+|...+-.+
T Consensus 124 ~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~-n~gvkl~~iKF~e~v 171 (257)
T 3gs3_A 124 YLCSLMEPGDSAEQAWNILSLIKAQILDMIDNE-NDGIRTNAIKFLEGV 171 (257)
T ss_dssp HHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSS-CHHHHHHHHHHHHHH
T ss_pred HHhcCCCCcchHHHHHHHHHHHHHHHHHHHccC-CcchHHHHHHHHHHH
Confidence 35554311 1100 0 12333455556666 777887777666553
No 134
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=83.52 E-value=10 Score=27.12 Aligned_cols=115 Identities=17% Similarity=0.167 Sum_probs=71.2
Q ss_pred CCchHHHhHHHHHHHHhcC---CCHHH---------HHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccC------
Q 044293 1 MSAPRVRETINNCVSRSQS---DSYED---------QQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKS------ 62 (236)
Q Consensus 1 ~~~~~~~~~i~~lv~~L~~---~~~~~---------~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~------ 62 (236)
||++++.+.+..++..+.. .|.+. ..+-+..+...... ...+..|.+. |++..+-..|..
T Consensus 1 ~~~~e~~~~~~~l~~~M~~Aa~~D~~a~~~~~PA~~KlklL~~V~~~l~k-~~l~~~~ld~-giL~~l~~WL~PLpDgsL 78 (145)
T 2xpp_A 1 MDPGTVLEISRSLKKRMQDILKKDNANNLEGRPATGKIENVEEISDILMS-KALQESLLDE-GILDEIKGWLEPLPDKSM 78 (145)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHTC-TTTHHHHHHT-THHHHHHHHHSCCTTSCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHhhHHHHHHHHhh-HHHHHHHHHc-CHHHHHHHHhCcCCCCCC
Confidence 8999999999999888852 12111 11222223333333 3567889997 999999988874
Q ss_pred CChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccC-CHHHHHHHHHHHHHh
Q 044293 63 SSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSS-SQETVKLASSLICSL 120 (236)
Q Consensus 63 ~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~-~~~~~~~a~~~L~~L 120 (236)
++..+|+..+.+|.++- -.+..+.+.|.=..++.+-++.+ .++.++.|-..+..-
T Consensus 79 P~~~Ir~~lL~~L~~lP---I~~e~Lk~SglGkvv~~l~k~~~et~~nk~la~~Li~~W 134 (145)
T 2xpp_A 79 PNIKIRKRLLDVLKTMK---IHKEHLVTSGVGKIVYFYSINPKESKEVRASAKALVQKW 134 (145)
T ss_dssp CCHHHHHHHHHHHHTSC---CCHHHHHHHCHHHHHHHHHHCTTSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCC---CCHHHhhcCCCCcchhhhhcCCccCHHHHHHHHHHHHHH
Confidence 24588999889998874 33666766654444444444432 577887777666543
No 135
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=82.60 E-value=6.2 Score=37.42 Aligned_cols=144 Identities=13% Similarity=0.088 Sum_probs=80.5
Q ss_pred HHHHHHHhc----CCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCC---C
Q 044293 10 INNCVSRSQ----SDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLN---P 82 (236)
Q Consensus 10 i~~lv~~L~----~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~---~ 82 (236)
++.....|. +++++.+..++++|.....--+ -..+... +.++.+..+|.. ++++..|+.+|..+... +
T Consensus 191 ~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~--~~~i~~~-~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~ 265 (980)
T 3ibv_A 191 VSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWIN--INLIVNE-PCMNLLYSFLQI--EELRCAACETMTEIVNKKMKP 265 (980)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC--HHHHHCH-HHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcC--HHhhhcc-hHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCCh
Confidence 455555553 3678888899999998887422 2445565 899999999865 78899999988876443 3
Q ss_pred chhHHhhhcccHHHHHHHHhc-cCCHHHHHHHHHHHHHhccc----c-hh-------hhhhc-c-cCcHHHHHHhhcCCC
Q 044293 83 DLKQSLASMETIYRLNWIIQS-SSSQETVKLASSLICSLAML----D-KN-------KARFG-V-AGTVQVLVKAVSAPS 147 (236)
Q Consensus 83 ~~~~~i~~~g~i~~L~~lL~~-~~~~~~~~~a~~~L~~Ls~~----~-~~-------~~~i~-~-~g~i~~Lv~lL~~~~ 147 (236)
+++..++..=.+...+..+.. ..|.+..+..+..+..+... . .. +.... . .+.++.++..+..++
T Consensus 266 ~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~ 345 (980)
T 3ibv_A 266 LEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDY 345 (980)
T ss_dssp HHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSS
T ss_pred hhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCc
Confidence 344444432112222222221 22677766555444332211 0 00 01111 1 467777778877776
Q ss_pred cHHHHHHHHHH
Q 044293 148 NPAGHHLLSSL 158 (236)
Q Consensus 148 ~~~~~~a~~aL 158 (236)
+++...++..+
T Consensus 346 deVs~~t~~Fw 356 (980)
T 3ibv_A 346 DETSTAVFPFL 356 (980)
T ss_dssp HHHHHTTHHHH
T ss_pred hhHHHHHHHHH
Confidence 65554444443
No 136
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=82.39 E-value=27 Score=33.48 Aligned_cols=171 Identities=12% Similarity=0.098 Sum_probs=97.4
Q ss_pred CCHHHHHHHHHHHHHHhcC-----ChHHHHHHHhccCcHHHHHhhccC-----CChHHHHHHHHHHHhhCCCC--chhHH
Q 044293 20 DSYEDQQKALQTLASITRV-----SPQYRSLLAQTDGAISTLLGLSKS-----SSPIIRTLSLSILLNLSLNP--DLKQS 87 (236)
Q Consensus 20 ~~~~~~~~a~~~L~~l~~~-----~~~~~~~i~~~~g~i~~Lv~lL~~-----~~~~~~~~a~~~L~~l~~~~--~~~~~ 87 (236)
.++.+|..|+..|.+.... .++.+..+.+ ..+..+...-.+ .++.++.+.+.++..++..+ +..
T Consensus 73 ~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~LR~--~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~W-- 148 (1073)
T 3gjx_A 73 QNMNTKYYGLQILENVIKTRWKILPRNQCEGIKK--YVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHW-- 148 (1073)
T ss_dssp CSHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHH--HHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTC--
T ss_pred CCHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHH--HHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhc--
Confidence 3555666666666654432 2334444433 344444443222 13445555555665554432 211
Q ss_pred hhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccc-h--------h-----hhhhcccCcHHHHHHh----hc-CCCc
Q 044293 88 LASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLD-K--------N-----KARFGVAGTVQVLVKA----VS-APSN 148 (236)
Q Consensus 88 i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~-~--------~-----~~~i~~~g~i~~Lv~l----L~-~~~~ 148 (236)
.+.++-++..++. ++......+.+|..|+..- + . +..+.+ -++.++.+ |. ..++
T Consensus 149 ---p~fi~dLv~~~~~--~~~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~--~~~~Il~ll~~iL~~~~~~ 221 (1073)
T 3gjx_A 149 ---PTFISDIVGASRT--SESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCN--EFSQIFQLCQFVMENSQNA 221 (1073)
T ss_dssp ---TTHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHH--TCHHHHHHHHHHHHHCCCH
T ss_pred ---cHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH--HHHHHHHHHHHHhcccCCH
Confidence 3567777777754 3555666777777766541 0 1 112222 14444444 43 3566
Q ss_pred HHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHH-HHhcCCChhhHHHHHHHHHHHHcC
Q 044293 149 PAGHHLLSSLAELVQFHGNSTLAVRAGAVSELI-HLIGSTEAEDLAGTSLAVLNLLAR 205 (236)
Q Consensus 149 ~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv-~ll~~~~~~~~~~~a~~~L~~l~~ 205 (236)
.....++.+|..+..+-+. ..+++.+.++.++ .+|. .++++..|+.+|..+..
T Consensus 222 ~lv~~~L~~L~~~~sWI~i-~~i~~~~ll~~L~~~~L~---~~~~r~aA~dcL~eIv~ 275 (1073)
T 3gjx_A 222 PLVHATLETLLRFLNWIPL-GYIFETKLISTLIYKFLN---VPMFRNVSLKCLTEIAG 275 (1073)
T ss_dssp HHHHHHHHHHHHHTTTSCT-HHHHSSSHHHHHHHHTSS---SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCH-HHhccchHHHHHHHHhcC---ChHHHHHHHHHHHHHHh
Confidence 7778889999999887543 4566778888774 5554 35688899999998774
No 137
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=82.31 E-value=21 Score=34.64 Aligned_cols=132 Identities=11% Similarity=0.111 Sum_probs=68.3
Q ss_pred hHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccc-------hhh-----hhhcc
Q 044293 65 PIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLD-------KNK-----ARFGV 132 (236)
Q Consensus 65 ~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~-------~~~-----~~i~~ 132 (236)
+.++...+.++..++..+-.. .=.+.++.|+.++++ ++..++.+..+|..++.+- ..+ ..+.+
T Consensus 110 ~~vr~kla~~la~Ia~~d~p~---~Wp~ll~~L~~~~~~--~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~ 184 (1204)
T 3a6p_A 110 NHIKDALSRIVVEMIKREWPQ---HWPDMLIELDTLSKQ--GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQ 184 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHSTT---TCTTHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcc---cchHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHH
Confidence 344444455555444432100 013677888888865 3566777888888886541 111 11111
Q ss_pred --cCcHHHHHHhhcCC-------------------CcHHHHHHHHHHHHHhcCCCChHHHHHhC--cHHHHHHHhcCCCh
Q 044293 133 --AGTVQVLVKAVSAP-------------------SNPAGHHLLSSLAELVQFHGNSTLAVRAG--AVSELIHLIGSTEA 189 (236)
Q Consensus 133 --~g~i~~Lv~lL~~~-------------------~~~~~~~a~~aL~~L~~~~~~~~~~~~~g--~i~~lv~ll~~~~~ 189 (236)
..+++.+..++.+. +..+...++.++.+...+-.. ..+.+.. .++.+..++.+
T Consensus 185 ~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~-~~i~~~~~~ll~~l~~~l~~--- 260 (1204)
T 3a6p_A 185 NMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSM-SHITAENCKLLEILCLLLNE--- 260 (1204)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCH-HHHHTTTSHHHHHHHHGGGC---
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCH-HHHHhccchHHHHHHHHcCC---
Confidence 13334444444321 123445566666554443221 2233332 56666666553
Q ss_pred hhHHHHHHHHHHHHcC
Q 044293 190 EDLAGTSLAVLNLLAR 205 (236)
Q Consensus 190 ~~~~~~a~~~L~~l~~ 205 (236)
++++..|+.+|..+..
T Consensus 261 ~~lr~~A~ecL~~i~s 276 (1204)
T 3a6p_A 261 QELQLGAAECLLIAVS 276 (1204)
T ss_dssp TTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4577889999988875
No 138
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=81.87 E-value=3.7 Score=32.34 Aligned_cols=101 Identities=18% Similarity=0.176 Sum_probs=67.4
Q ss_pred CCChHHHHHHHHHHHhhCCCCc-hhHHhhhcccHHHHHHHHhcc-------CCHHHHHHHHHHHHHhcccchh-hhhhcc
Q 044293 62 SSSPIIRTLSLSILLNLSLNPD-LKQSLASMETIYRLNWIIQSS-------SSQETVKLASSLICSLAMLDKN-KARFGV 132 (236)
Q Consensus 62 ~~~~~~~~~a~~~L~~l~~~~~-~~~~i~~~g~i~~L~~lL~~~-------~~~~~~~~a~~~L~~Ls~~~~~-~~~i~~ 132 (236)
+..+..+--++++++|+-.++. ++..+........++..+... .+..++..+++.+.|++..-.. +. +
T Consensus 101 ~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~ 177 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D 177 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---C
T ss_pred CCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---h
Confidence 4456778889999999999999 777776554455555554221 1456777888899999875421 21 2
Q ss_pred cCcHHHHHHhhcC---------CCcHHHHHHHHHHHHHhcCC
Q 044293 133 AGTVQVLVKAVSA---------PSNPAGHHLLSSLAELVQFH 165 (236)
Q Consensus 133 ~g~i~~Lv~lL~~---------~~~~~~~~a~~aL~~L~~~~ 165 (236)
......+++.+.. .+.+....++-+|++|...+
T Consensus 178 ~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~ 219 (253)
T 3gae_A 178 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 219 (253)
T ss_dssp TTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCc
Confidence 3445556666653 25577788888998888643
No 139
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=80.33 E-value=40 Score=31.89 Aligned_cols=66 Identities=15% Similarity=0.110 Sum_probs=45.4
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC---ChhhHHHHH
Q 044293 145 APSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR---FDEGMIALT 214 (236)
Q Consensus 145 ~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~---~~~~~~~i~ 214 (236)
+.++..+..++.+|.....+-+ -..++..+.++.+.+++.+ +++++.|+.+|..+.. .++.+..++
T Consensus 204 ~~~~~l~~~~L~~l~s~i~wi~-~~~i~~~~ll~~l~~~L~~---~~~r~~A~ecL~ei~~k~~~~~~k~~li 272 (980)
T 3ibv_A 204 AKNYGTVGLCLQVYAQWVSWIN-INLIVNEPCMNLLYSFLQI---EELRCAACETMTEIVNKKMKPLEKLNLL 272 (980)
T ss_dssp TTCHHHHHHHHHHHHHHTTTSC-HHHHHCHHHHHHHHHHTTS---HHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhhcC-HHhhhcchHHHHHHHHcCC---hHHHHHHHHHHHHHHHcCCChhhHHHHH
Confidence 3567778888899888777533 3445567788888888865 4678888888887753 344444433
No 140
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=78.32 E-value=23 Score=27.87 Aligned_cols=185 Identities=12% Similarity=0.108 Sum_probs=109.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcC-ChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHh
Q 044293 10 INNCVSRSQSDSYEDQQKALQTLASITRV-SPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSL 88 (236)
Q Consensus 10 i~~lv~~L~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i 88 (236)
|-.++..-+....+.+...+.-.+.+..+ ++. +. +.+++.++.+-.+.+.++|...+..+...+... ..+
T Consensus 17 v~~lln~A~~~~~~~kl~~L~qa~el~~~~dp~----ll--~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k---~~l 87 (257)
T 3gs3_A 17 VVDWCNELVIASPSTKCELLAKVQETVLGSCAE----LA--EEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVK---VEL 87 (257)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHTTTTGG----GH--HHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC---GGG
T ss_pred HHHHHHHhhhcCcHHHHHHHHHHHHHHHccCHh----HH--HHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH---HHH
Confidence 33333333443446888888888887765 333 23 256777778766778899999999998766321 112
Q ss_pred hhcccHHHHHHHHhccCCHHHHHHHHHH--------HHHhcccchhh---hhhc-c-cCcHHHHHHhhcCCCcHHHHHHH
Q 044293 89 ASMETIYRLNWIIQSSSSQETVKLASSL--------ICSLAMLDKNK---ARFG-V-AGTVQVLVKAVSAPSNPAGHHLL 155 (236)
Q Consensus 89 ~~~g~i~~L~~lL~~~~~~~~~~~a~~~--------L~~Ls~~~~~~---~~i~-~-~g~i~~Lv~lL~~~~~~~~~~a~ 155 (236)
-...++.|..+++.. ++.+.+.+..+ +..++.++... ...= . ...=..++.+..+++..++-.|+
T Consensus 88 -~~~~l~~L~~Ll~d~-d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~i 165 (257)
T 3gs3_A 88 -LPHVINVVSMLLRDN-SAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAI 165 (257)
T ss_dssp -HHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHH
T ss_pred -HHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHH
Confidence 345777888888866 78888776644 33344433211 1111 1 33445566777788888888888
Q ss_pred HHHHHHh--cCCC-----------------------ChHHHHH--hCcHHHHHHHhcCCC-hhhHHHHHHHHHHHHcC
Q 044293 156 SSLAELV--QFHG-----------------------NSTLAVR--AGAVSELIHLIGSTE-AEDLAGTSLAVLNLLAR 205 (236)
Q Consensus 156 ~aL~~L~--~~~~-----------------------~~~~~~~--~g~i~~lv~ll~~~~-~~~~~~~a~~~L~~l~~ 205 (236)
+.+-.+. .++. +...+-+ .+.+..|+..+.... .......++..|..++.
T Consensus 166 KF~e~vIl~qT~~~~~~~~~~~d~SL~~Vp~~Hp~l~~~~Le~Ea~~lL~~LL~~~~~~~iss~~l~a~lnsL~~Iak 243 (257)
T 3gs3_A 166 KFLEGVVVLQSFADEDSLKRDGDFSLADVPDHCTLFRREKLQEEGNNILDILLQFHGTTHISSVNLIACTSSLCTIAK 243 (257)
T ss_dssp HHHHHHHHHTSCCCTTSCCCTTCCCGGGSCSSCCSSCHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCcccCCCCCCCCHHHCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHH
Confidence 8775533 2111 1233322 356777777665431 12234566667766664
No 141
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=77.33 E-value=42 Score=32.10 Aligned_cols=133 Identities=11% Similarity=0.048 Sum_probs=82.4
Q ss_pred HHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccC-------CChHHHHHHHHHHHh
Q 044293 5 RVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKS-------SSPIIRTLSLSILLN 77 (236)
Q Consensus 5 ~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~-------~~~~~~~~a~~~L~~ 77 (236)
.++.....+.+.+...+.+.+..++++|.|+... ..++.|..++.. ....++..|+.+|..
T Consensus 437 ~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p------------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~ 504 (1056)
T 1lsh_A 437 LLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP------------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRN 504 (1056)
T ss_dssp GTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG------------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh------------hHHHHHHHhhcCccccccccchHHHHHHHHHHHH
Confidence 3455555566666667777777788888888652 346666666642 124677788888888
Q ss_pred hCCCCchhHHhhhcccHHHHHHHHhc-cCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcC-CCcHHHHHHH
Q 044293 78 LSLNPDLKQSLASMETIYRLNWIIQS-SSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSA-PSNPAGHHLL 155 (236)
Q Consensus 78 l~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~ 155 (236)
++.... .. .-+.+..+..+ ..+.++|..|...|....-+ ...+..+...+.. .+..+.....
T Consensus 505 ~~~~~p---~~----v~~il~~i~~n~~e~~EvRiaA~~~Lm~t~P~---------~~~l~~ia~~l~~E~~~QV~sfv~ 568 (1056)
T 1lsh_A 505 IAKRDP---RK----VQEIVLPIFLNVAIKSELRIRSCIVFFESKPS---------VALVSMVAVRLRREPNLQVASFVY 568 (1056)
T ss_dssp GGGTCH---HH----HHHHHHHHHHCTTSCHHHHHHHHHHHHHTCCC---------HHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred hhhhch---HH----HHHHHHHHhcCCCCChHHHHHHHHHHHHHCcC---------HHHHHHHHHHHhhCchHHHHHHHH
Confidence 774321 11 23345566642 33789998888888654322 2335666666665 4566666777
Q ss_pred HHHHHHhcCC
Q 044293 156 SSLAELVQFH 165 (236)
Q Consensus 156 ~aL~~L~~~~ 165 (236)
+.|.+++.+.
T Consensus 569 S~l~sla~s~ 578 (1056)
T 1lsh_A 569 SQMRSLSRSS 578 (1056)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHHhcC
Confidence 7777777654
No 142
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=76.54 E-value=45 Score=32.31 Aligned_cols=146 Identities=12% Similarity=0.032 Sum_probs=87.1
Q ss_pred CCchHHHhHHHHHHHHhc---CC--CHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHh-hc-cCCChHHHHHHHH
Q 044293 1 MSAPRVRETINNCVSRSQ---SD--SYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLG-LS-KSSSPIIRTLSLS 73 (236)
Q Consensus 1 ~~~~~~~~~i~~lv~~L~---~~--~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~-lL-~~~~~~~~~~a~~ 73 (236)
|+.+++++.+..+.+.+. ++ +++.|..|-..|..+-.+ +++...+.. +. .+.++.+|-.|+.
T Consensus 1 ~~~~~~~~~~~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~-----------p~~~~~~~~~L~~~s~~~~vR~~A~~ 69 (1204)
T 3a6p_A 1 MAMDQVNALCEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEK-----------CPICVPCGLRLAEKTQVAIVRHFGLQ 69 (1204)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH-----------CTTHHHHHHHHTSTTSCHHHHHHHHH
T ss_pred CChhhHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhC-----------chHHHHHHHHHHccCCCHHHHHHHHH
Confidence 565666666655555542 33 667788887777776332 122333333 33 3457788888888
Q ss_pred HHHhhCC------CCchhHHhhhcccHHHHHHHHhcc--CCHHHHHHHHHHHHHhcccchhhhhhcc-cCcHHHHHHhhc
Q 044293 74 ILLNLSL------NPDLKQSLASMETIYRLNWIIQSS--SSQETVKLASSLICSLAMLDKNKARFGV-AGTVQVLVKAVS 144 (236)
Q Consensus 74 ~L~~l~~------~~~~~~~i~~~g~i~~L~~lL~~~--~~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~ 144 (236)
.|.+... .++.|..|. ...++.+...-... ...-++...+.++..++..+-. .+ .+.++.|++++.
T Consensus 70 ~Lk~~I~~~W~~l~~e~k~~Ir-~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p----~~Wp~ll~~L~~~~~ 144 (1204)
T 3a6p_A 70 ILEHVVKFRWNGMSRLEKVYLK-NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP----QHWPDMLIELDTLSK 144 (1204)
T ss_dssp HHHHHHHHSGGGSCHHHHHHHH-HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST----TTCTTHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCHHHHHHHH-HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc----ccchHHHHHHHHHhc
Confidence 8887532 233344443 33444433221110 1467777788888887765422 12 688999999997
Q ss_pred CCCcHHHHHHHHHHHHHhc
Q 044293 145 APSNPAGHHLLSSLAELVQ 163 (236)
Q Consensus 145 ~~~~~~~~~a~~aL~~L~~ 163 (236)
+ ++...+.++.+|..|+.
T Consensus 145 ~-~~~~~e~~L~iL~~L~E 162 (1204)
T 3a6p_A 145 Q-GETQTELVMFILLRLAE 162 (1204)
T ss_dssp T-CHHHHHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHHHH
Confidence 6 44567788888888875
No 143
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=73.27 E-value=6.5 Score=28.67 Aligned_cols=92 Identities=10% Similarity=0.117 Sum_probs=63.8
Q ss_pred CcHHHHHhhccCCChHHHHHHHHHHHhhCCCC--chhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhh
Q 044293 51 GAISTLLGLSKSSSPIIRTLSLSILLNLSLNP--DLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKA 128 (236)
Q Consensus 51 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~--~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~ 128 (236)
.++..|...|.+.++.++-.|+.+|-.|..+- .....|.+..++.-|+++++...++.++..+...|..-+..-.+..
T Consensus 52 eA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~ 131 (163)
T 1x5b_A 52 DCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQKDP 131 (163)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTTCS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcCCc
Confidence 45677778888999999988888887776652 3466777888999999999863478999988888776654322111
Q ss_pred hhcccCcHHHHHHhhcC
Q 044293 129 RFGVAGTVQVLVKAVSA 145 (236)
Q Consensus 129 ~i~~~g~i~~Lv~lL~~ 145 (236)
+.+.|..+-+.|+.
T Consensus 132 ---~l~~i~~~Y~~Lk~ 145 (163)
T 1x5b_A 132 ---QFSLISATIKSMKE 145 (163)
T ss_dssp ---TTHHHHHHHHHHHT
T ss_pred ---ccHHHHHHHHHHHH
Confidence 12345555555544
No 144
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=72.64 E-value=7.9 Score=27.40 Aligned_cols=71 Identities=8% Similarity=0.142 Sum_probs=55.3
Q ss_pred CcHHHHHhhccCCChHHHHHHHHHHHhhCCCCc--hhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcc
Q 044293 51 GAISTLLGLSKSSSPIIRTLSLSILLNLSLNPD--LKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAM 122 (236)
Q Consensus 51 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~--~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~ 122 (236)
.++..|...|.+.++.++-.|+.+|-.|..+-. ....+.+..++.-++++++.. ++.++..+...+...+.
T Consensus 42 ~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~-~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 42 DCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKG-HPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccC-CHHHHHHHHHHHHHHHH
Confidence 457777778888899888888888877766533 255677788999999998776 88999999888876664
No 145
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=71.80 E-value=18 Score=30.04 Aligned_cols=100 Identities=18% Similarity=0.189 Sum_probs=64.7
Q ss_pred CCChHHHHHHHHHHHhhCCCCch-hHHhhhcccHHHHHHHHhc----c---CCHHHHHHHHHHHHHhcccchh-hhhhcc
Q 044293 62 SSSPIIRTLSLSILLNLSLNPDL-KQSLASMETIYRLNWIIQS----S---SSQETVKLASSLICSLAMLDKN-KARFGV 132 (236)
Q Consensus 62 ~~~~~~~~~a~~~L~~l~~~~~~-~~~i~~~g~i~~L~~lL~~----~---~~~~~~~~a~~~L~~Ls~~~~~-~~~i~~ 132 (236)
+..+..+-.++++++|+-.++.. +..+........++..+.. . .+..++..+++++.|++..-.. +. +
T Consensus 210 ~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~---~ 286 (362)
T 3l3f_X 210 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D 286 (362)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCS---C
T ss_pred CCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---h
Confidence 44567777899999999999984 5555443233444544421 1 0356777888888999875421 11 1
Q ss_pred cCcHHHHHHhhc---------CCCcHHHHHHHHHHHHHhcC
Q 044293 133 AGTVQVLVKAVS---------APSNPAGHHLLSSLAELVQF 164 (236)
Q Consensus 133 ~g~i~~Lv~lL~---------~~~~~~~~~a~~aL~~L~~~ 164 (236)
...+..++..+. ..+.+....++-||++|...
T Consensus 287 ~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~ 327 (362)
T 3l3f_X 287 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 327 (362)
T ss_dssp TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhc
Confidence 344556666665 24667888899999999863
No 146
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=70.17 E-value=42 Score=27.17 Aligned_cols=107 Identities=16% Similarity=0.186 Sum_probs=69.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhc-cCcHHHHHhhccC-------CChHHHHHHHHHHHhhCCC
Q 044293 10 INNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQT-DGAISTLLGLSKS-------SSPIIRTLSLSILLNLSLN 81 (236)
Q Consensus 10 i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~-~g~i~~Lv~lL~~-------~~~~~~~~a~~~L~~l~~~ 81 (236)
+..|+ ......+.+++.|++.|.....+||.....+.+. +..+..+..-|.. ....++..-+++|-.|..+
T Consensus 73 L~nL~-~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~ 151 (315)
T 3qml_C 73 LANLS-LNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVT 151 (315)
T ss_dssp HHHHH-HCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCC
T ss_pred HHHHH-hhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcC
Confidence 33444 3345667789999999999999999877665554 4444444433322 2335567778899889888
Q ss_pred CchhHHhhhcccHHHHHHHHhcc-CCHHHHHHHHHHHHHhc
Q 044293 82 PDLKQSLASMETIYRLNWIIQSS-SSQETVKLASSLICSLA 121 (236)
Q Consensus 82 ~~~~~~i~~~g~i~~L~~lL~~~-~~~~~~~~a~~~L~~Ls 121 (236)
+. .+ ...++..|..++... .+++++..++..+..+-
T Consensus 152 ~~---~F-~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 152 SE---DL-PIYSTVVLQNVYERNNKDKQLQIKVLELISKIL 188 (315)
T ss_dssp ST---TC---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred hH---hh-hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHc
Confidence 72 22 244667777777643 16888888887777543
No 147
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=67.90 E-value=26 Score=29.70 Aligned_cols=101 Identities=18% Similarity=0.185 Sum_probs=67.0
Q ss_pred CCChHHHHHHHHHHHhhCCCCch-hHHhhhcccHHHHHHHHhcc-------CCHHHHHHHHHHHHHhcccchh-hhhhcc
Q 044293 62 SSSPIIRTLSLSILLNLSLNPDL-KQSLASMETIYRLNWIIQSS-------SSQETVKLASSLICSLAMLDKN-KARFGV 132 (236)
Q Consensus 62 ~~~~~~~~~a~~~L~~l~~~~~~-~~~i~~~g~i~~L~~lL~~~-------~~~~~~~~a~~~L~~Ls~~~~~-~~~i~~ 132 (236)
+..+..+-.++++++|+-.++.. +..+........++..+... .+..++..+++++.|++..-.. +. +
T Consensus 273 ~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~---~ 349 (425)
T 3pst_A 273 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D 349 (425)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS---C
T ss_pred CCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---h
Confidence 44567777899999999999984 55554444456666655311 0346777888888999875421 11 1
Q ss_pred cCcHHHHHHhhc---------CCCcHHHHHHHHHHHHHhcCC
Q 044293 133 AGTVQVLVKAVS---------APSNPAGHHLLSSLAELVQFH 165 (236)
Q Consensus 133 ~g~i~~Lv~lL~---------~~~~~~~~~a~~aL~~L~~~~ 165 (236)
...+..++..+. ..+.+....++-||++|....
T Consensus 350 ~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~ 391 (425)
T 3pst_A 350 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 391 (425)
T ss_dssp TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 344556666665 246678888999999998643
No 148
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=66.93 E-value=16 Score=26.24 Aligned_cols=76 Identities=14% Similarity=0.194 Sum_probs=53.1
Q ss_pred hHHHhHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcC-ChHHHHHHHhccCcHHH-HHhhccCC---ChHHHHHHHHHHHh
Q 044293 4 PRVRETINNCVSRSQS-DSYEDQQKALQTLASITRV-SPQYRSLLAQTDGAIST-LLGLSKSS---SPIIRTLSLSILLN 77 (236)
Q Consensus 4 ~~~~~~i~~lv~~L~~-~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~~g~i~~-Lv~lL~~~---~~~~~~~a~~~L~~ 77 (236)
...++.+..+.+.+++ .++.++..|+..|-.+..+ +..+...|... .++.. |+.+++.. ...+++.++..+..
T Consensus 49 ~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask-~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~ 127 (152)
T 3rru_A 49 DGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKK-EFVKENLVKLLNPRYNLPLDIQNRILNFIKT 127 (152)
T ss_dssp THHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSH-HHHTTTTGGGGSGGGCCCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhh-HhHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 3457788889999975 5777888888888877766 34455666654 66653 67777532 34788888888886
Q ss_pred hCC
Q 044293 78 LSL 80 (236)
Q Consensus 78 l~~ 80 (236)
-+.
T Consensus 128 Wa~ 130 (152)
T 3rru_A 128 WSQ 130 (152)
T ss_dssp HHT
T ss_pred HHH
Confidence 543
No 149
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=66.04 E-value=9.7 Score=29.32 Aligned_cols=72 Identities=14% Similarity=0.159 Sum_probs=56.9
Q ss_pred CcHHHHHhhccCCChHHHHHHHHHHHhhCCCCc--hhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcc
Q 044293 51 GAISTLLGLSKSSSPIIRTLSLSILLNLSLNPD--LKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAM 122 (236)
Q Consensus 51 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~--~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~ 122 (236)
.++..|..-|.+.++.++-.|+.+|-.+..+-. ....|.+..++..|.++++...+.+++..++..|...+.
T Consensus 45 ~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 45 YAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 456777788889999999999988887777633 366777888999999998765478899998888887664
No 150
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=65.90 E-value=65 Score=30.88 Aligned_cols=152 Identities=13% Similarity=0.140 Sum_probs=80.7
Q ss_pred hHHHHHHHHhc------CCCHHHHHHHHHHHHHHhcC-ChH-HHHHHHhccCcHHHHHhhccCCC---hH--HHHHHHHH
Q 044293 8 ETINNCVSRSQ------SDSYEDQQKALQTLASITRV-SPQ-YRSLLAQTDGAISTLLGLSKSSS---PI--IRTLSLSI 74 (236)
Q Consensus 8 ~~i~~lv~~L~------~~~~~~~~~a~~~L~~l~~~-~~~-~~~~i~~~~g~i~~Lv~lL~~~~---~~--~~~~a~~~ 74 (236)
+++..+.+.|+ ..+......++++++.++.. .++ -++.+. .+++.|+.+..+.. .+ ++...+.+
T Consensus 473 ~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp---~vi~~Ll~L~e~~~~kd~k~~vas~i~~v 549 (1073)
T 3gjx_A 473 DTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLV---TVIKDLLGLCEQKRGKDNKAIIASNIMYI 549 (1073)
T ss_dssp HHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH---HHHHHHHHHHHHSCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHH---HHHHHHhcccccccccchhHHHHHHHHHH
Confidence 34444555553 23588899999999999754 222 233333 57888888875542 22 22222334
Q ss_pred HHhhCCCCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcc--cC----cHHHHHHhhcC---
Q 044293 75 LLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGV--AG----TVQVLVKAVSA--- 145 (236)
Q Consensus 75 L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~--~g----~i~~Lv~lL~~--- 145 (236)
+...+.--.....+. ...+..|+..+... ++.++..|+.++..++..- +..++. .| .++.+++.+.+
T Consensus 550 lgrY~~wl~~h~~~L-~~vl~~L~~~m~~~-~~~vq~aA~~af~~i~~~C--~~~lv~~~~~e~~p~i~~il~~~~~~~~ 625 (1073)
T 3gjx_A 550 VGQYPRFLRAHWKFL-KTVVNKLFEFMHET-HDGVQDMACDTFIKIAQKC--RRHFVQVQVGEVMPFIDEILNNINTIIC 625 (1073)
T ss_dssp HHHCHHHHHHCHHHH-HHHHHHHHHHTTCC-STTHHHHHHHHHHHHHHHT--GGGGTSCCTTCSSCHHHHHHTSHHHHHT
T ss_pred HhhhHHHHHhCHHHH-HHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHH--HHHHhhccccccchHHHHHHHHHHHHHH
Confidence 433221111111111 22444555555555 6899999999999998743 444432 22 44444443322
Q ss_pred -CCcHHHHHHHHHHHHHhcCCC
Q 044293 146 -PSNPAGHHLLSSLAELVQFHG 166 (236)
Q Consensus 146 -~~~~~~~~a~~aL~~L~~~~~ 166 (236)
-.+.-...-..+++.+....+
T Consensus 626 ~l~~~~~~~lyeav~~vi~~~p 647 (1073)
T 3gjx_A 626 DLQPQQVHTFYEAVGYMIGAQT 647 (1073)
T ss_dssp TCCHHHHHHHHHHHHHHHTTCC
T ss_pred hcCHHHHHHHHHHHHHHHHhCC
Confidence 234444555566666665433
No 151
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=63.65 E-value=27 Score=24.81 Aligned_cols=71 Identities=14% Similarity=0.084 Sum_probs=55.0
Q ss_pred ccHHHHHHHHhccCCHHHHHHHHHHHHHhcccc--hhhhhhcccCcHHHHHHhhcC------CCcHHHHHHHHHHHHHhc
Q 044293 92 ETIYRLNWIIQSSSSQETVKLASSLICSLAMLD--KNKARFGVAGTVQVLVKAVSA------PSNPAGHHLLSSLAELVQ 163 (236)
Q Consensus 92 g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~--~~~~~i~~~g~i~~Lv~lL~~------~~~~~~~~a~~aL~~L~~ 163 (236)
.++..|.+-|++. ++.++..|+.+|-.+..+- ....++....++..|++++.. .+..++..++..+..-+.
T Consensus 38 ~a~rai~krl~~~-n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 38 HAPWLLAHKIQSP-QEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 4667788888888 8999999999988888764 455777788999999999974 245677777777765554
No 152
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=63.15 E-value=13 Score=27.30 Aligned_cols=72 Identities=15% Similarity=0.105 Sum_probs=56.6
Q ss_pred CcHHHHHhhccCCChHHHHHHHHHHHhhCCCC--chhHHhhhcccHHHHHHHHhc-----cCCHHHHHHHHHHHHHhcc
Q 044293 51 GAISTLLGLSKSSSPIIRTLSLSILLNLSLNP--DLKQSLASMETIYRLNWIIQS-----SSSQETVKLASSLICSLAM 122 (236)
Q Consensus 51 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~--~~~~~i~~~g~i~~L~~lL~~-----~~~~~~~~~a~~~L~~Ls~ 122 (236)
.++..|...|.+.++.++-.|+.+|-.|..+- .....|.+..++.-|++++.. ..+.+++..++..|..-+.
T Consensus 50 ~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 50 IAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 45777788888999999999999888877763 346678888999999999963 1268899998888876654
No 153
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=63.10 E-value=66 Score=26.88 Aligned_cols=176 Identities=13% Similarity=0.152 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHhcC-ChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHH
Q 044293 23 EDQQKALQTLASITRV-SPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWII 101 (236)
Q Consensus 23 ~~~~~a~~~L~~l~~~-~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL 101 (236)
+.+...+.-++.+..+ ++. +. +.+++.++.+-...+.++|...+.+|...+..+ ..+ -...++.|..+|
T Consensus 40 ~~Kl~~L~q~~EL~l~~dps----Ll--~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~---~el-~~~~l~~L~~LL 109 (386)
T 3o2t_A 40 DSKITVLKQVQELIINKDPT----LL--DNFLDEIIAFQADKSIEVRKFVIGFIEEACKRD---IEL-LLKLIANLNMLL 109 (386)
T ss_dssp THHHHHHHHHHHHHHTTCGG----GG--GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC---GGG-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCHH----HH--HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHH---HHH-HHHHHHHHHHHH
Confidence 4677788888886553 342 23 379999999988889999999999998766421 111 145677888888
Q ss_pred hccCCHHHHHHHHHHHHH--------hcccchhh---hhh-cc-cCcHHHHHHhhcCCCcHHHHHHHHHHHHHh--cCCC
Q 044293 102 QSSSSQETVKLASSLICS--------LAMLDKNK---ARF-GV-AGTVQVLVKAVSAPSNPAGHHLLSSLAELV--QFHG 166 (236)
Q Consensus 102 ~~~~~~~~~~~a~~~L~~--------Ls~~~~~~---~~i-~~-~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~--~~~~ 166 (236)
... ++.+.+.+..+..+ ++.++... ... .. ...-..++.+..+++..++-.|++.+-.+. .++.
T Consensus 110 ~d~-d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~~ 188 (386)
T 3o2t_A 110 RDE-NVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSPR 188 (386)
T ss_dssp TCS-SHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSCC
T ss_pred cCC-CHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhCCC
Confidence 766 78888765544332 22222211 011 01 233445666777788888888888775432 2210
Q ss_pred --------------------------ChHHHH-H-hCcHHHHHHHhcCCC-hhhHHHHHHHHHHHHcC-Chhh
Q 044293 167 --------------------------NSTLAV-R-AGAVSELIHLIGSTE-AEDLAGTSLAVLNLLAR-FDEG 209 (236)
Q Consensus 167 --------------------------~~~~~~-~-~g~i~~lv~ll~~~~-~~~~~~~a~~~L~~l~~-~~~~ 209 (236)
+...+. + .+.+..|++.+.... .......++.+|.+++. -|..
T Consensus 189 ~~d~~~p~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP~~ 261 (386)
T 3o2t_A 189 MADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRPMF 261 (386)
T ss_dssp CTTCCCCGGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSGGG
T ss_pred CCCcccccccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcHHH
Confidence 123333 2 367888888887631 23344567777777764 3443
No 154
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=61.44 E-value=34 Score=28.68 Aligned_cols=150 Identities=12% Similarity=0.097 Sum_probs=94.0
Q ss_pred HHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhh-------
Q 044293 6 VRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNL------- 78 (236)
Q Consensus 6 ~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l------- 78 (236)
+.+.++.++++-.+.+.++|+..+..|...+....+. +. ..++.|..+|...++.+.+.++.+..++
T Consensus 61 l~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el---~~---~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~ 134 (386)
T 3o2t_A 61 LDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIEL---LL---KLIANLNMLLRDENVNVVKKAILTMTQLYKVALQW 134 (386)
T ss_dssp GGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGG---HH---HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHH---HH---HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888888889999999999998888754333 22 4688888999888888877666555443
Q ss_pred -CCCCch-------hHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhc--ccc---hhh------------------
Q 044293 79 -SLNPDL-------KQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLA--MLD---KNK------------------ 127 (236)
Q Consensus 79 -~~~~~~-------~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls--~~~---~~~------------------ 127 (236)
+.++.. ...+ ..+-..++.+++++ +..++.+|...+-.+- ... +.+
T Consensus 135 i~~~~~~~~~~e~~W~~m--~~lK~~Il~~~ds~-n~GVrl~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nH 211 (386)
T 3o2t_A 135 MVKSRVISELQEACWDMV--SAMAGDIILLLDSD-NDGIRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDH 211 (386)
T ss_dssp HHHC-CCCHHHHHHHHHH--HHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTC
T ss_pred HhcCCCcchhHHHHHHHH--HHHHHHHHHHhccC-CcchHHHHHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCC
Confidence 333321 1111 12333455556666 7889988887766532 111 110
Q ss_pred -----hhhc--ccCcHHHHHHhhcCC--CcHHHHHHHHHHHHHhcC
Q 044293 128 -----ARFG--VAGTVQVLVKAVSAP--SNPAGHHLLSSLAELVQF 164 (236)
Q Consensus 128 -----~~i~--~~g~i~~Lv~lL~~~--~~~~~~~a~~aL~~L~~~ 164 (236)
..+. ..+.+..|++.+.++ ++.....++.+|..++..
T Consensus 212 p~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~ 257 (386)
T 3o2t_A 212 PYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQ 257 (386)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHh
Confidence 1111 267788888888864 333445566777777764
No 155
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=59.90 E-value=22 Score=25.37 Aligned_cols=72 Identities=13% Similarity=0.081 Sum_probs=55.7
Q ss_pred CcHHHHHhhccCCChHHHHHHHHHHHhhCCCCc--hhHHhhhcccHHHHHHHHhc-----cCCHHHHHHHHHHHHHhcc
Q 044293 51 GAISTLLGLSKSSSPIIRTLSLSILLNLSLNPD--LKQSLASMETIYRLNWIIQS-----SSSQETVKLASSLICSLAM 122 (236)
Q Consensus 51 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~--~~~~i~~~g~i~~L~~lL~~-----~~~~~~~~~a~~~L~~Ls~ 122 (236)
.++..|..-+.+.++.++-.|+.+|-.|..+-. ....|.+..++.-|++++.. ..+.+++..+...+..-+.
T Consensus 48 ~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 48 LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 457777788889999999988888877766533 35777888899999999963 1268899988888876654
No 156
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=59.82 E-value=17 Score=27.78 Aligned_cols=72 Identities=15% Similarity=0.161 Sum_probs=55.4
Q ss_pred CcHHHHHhhccCCChHHHHHHHHHHHhhCCCC--chhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcc
Q 044293 51 GAISTLLGLSKSSSPIIRTLSLSILLNLSLNP--DLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAM 122 (236)
Q Consensus 51 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~--~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~ 122 (236)
.++..|..-|.+.++.++..|+.+|-.+..+- .....|.+..++.-|++++++..+.+++..++..+..-+.
T Consensus 42 ~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 42 NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 35666777788899999999998888877763 2356777888999999998765468888888877776554
No 157
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=59.72 E-value=33 Score=25.79 Aligned_cols=129 Identities=9% Similarity=0.020 Sum_probs=75.0
Q ss_pred cHHHHHhhccC------CChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccC--CHHHHHHHHHHHHHhccc
Q 044293 52 AISTLLGLSKS------SSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSS--SQETVKLASSLICSLAML 123 (236)
Q Consensus 52 ~i~~Lv~lL~~------~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~--~~~~~~~a~~~L~~Ls~~ 123 (236)
.+|.++.++.. .+.............|-.++.-.-...-.-.+|+++.++=... ...+|..|+..|..++..
T Consensus 41 LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~ 120 (196)
T 4atg_A 41 LVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDT 120 (196)
T ss_dssp THHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence 45555555432 2444444555566666666554333333457888888774321 337999999999999876
Q ss_pred chhhhhhcccCcHHHHHHhhcCC--CcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcC
Q 044293 124 DKNKARFGVAGTVQVLVKAVSAP--SNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGS 186 (236)
Q Consensus 124 ~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~ 186 (236)
-.+.-.-.+.-.+..+.+.+.++ +......|+..|..+.. ..++.-.+|.+-...+.
T Consensus 121 ~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG~------~~vr~~llP~l~~~~~~ 179 (196)
T 4atg_A 121 YSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILSK------NVVNTVIREHAEEYKRT 179 (196)
T ss_dssp HTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCH------HHHHTHHHHHHHHHHHH
T ss_pred hCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhHH------HHHHHhhhcCHHHHHHH
Confidence 54333333455666777777654 33455677777766654 23334445665555543
No 158
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=57.07 E-value=90 Score=27.02 Aligned_cols=129 Identities=11% Similarity=-0.003 Sum_probs=80.9
Q ss_pred ChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhh
Q 044293 64 SPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAV 143 (236)
Q Consensus 64 ~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL 143 (236)
|++..-..+..+...+..++.- +-=.+.-++.-|+++ +..+...|+.++. ....+..+...+.+..|++++
T Consensus 92 D~~~Li~Ll~~il~~~~Fd~VL----evysve~i~~aL~S~-~~~l~~~~ckVI~----~s~pk~lfa~t~iidiLL~ly 162 (500)
T 3vld_A 92 NYDYLLDVVDKLVPMADFDDVL----EVYSAEDLVKALRSE-IDPLKVAACRVIE----NSQPKGLFATSNIIDILLDIL 162 (500)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHH----HHSCHHHHHHHHTSS-CHHHHHHHHHHHH----TCSSGGGGTTSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHH----HhCCHHHHHHHHhcC-ChHHHHHHHHHhc----ccCchhHhccChHHHHHHHHH
Confidence 4555444555555555544433 333567788888888 7889988998888 445688888899999999999
Q ss_pred cCCCcH---HHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHH
Q 044293 144 SAPSNP---AGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLL 203 (236)
Q Consensus 144 ~~~~~~---~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l 203 (236)
...+.+ +....-.++..|+.++-.|..+.+ ...|.+...=+.. ++.+....+..+..+
T Consensus 163 Fd~~t~i~~vvn~IE~~~~~LssdeLirrril~-nnl~lL~~vK~~~-~~i~~sRLLdll~il 223 (500)
T 3vld_A 163 FDEKVENDKLITAIEKALERLSTDELIRRRLFD-NNLPYLVSVKGRM-ETVSFVRLIDFLTIE 223 (500)
T ss_dssp TCTTCCCHHHHHHHHHHHHHHTTSHHHHHHHHT-TTHHHHHHHHHHC-CHHHHHHHHHHHHHH
T ss_pred cCCCCCcHHHHHHHHHHHHHcCchHHHHHHHHH-HhHHHHHHHhcCC-CceeHHHHHHHHHHH
Confidence 886543 555555667777765545555554 3344444433333 233444445555444
No 159
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=50.96 E-value=16 Score=28.66 Aligned_cols=103 Identities=11% Similarity=0.058 Sum_probs=63.6
Q ss_pred CCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccC--------CChHHHHHHHHHHHhhCCCCch-hHHhh
Q 044293 19 SDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKS--------SSPIIRTLSLSILLNLSLNPDL-KQSLA 89 (236)
Q Consensus 19 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~--------~~~~~~~~a~~~L~~l~~~~~~-~~~i~ 89 (236)
+..+..+.-+++++.|+..+....+..+... ...+.+++.+.+ .+..++..++.++.|++..-.. +.
T Consensus 101 ~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~-~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~--- 176 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFNNENWGVKLLESN-QVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS--- 176 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSH-HHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---
T ss_pred CCchhHHHHHHHHHHHcccCCchHHHHHhcc-hhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---
Confidence 4567788889999999988744245555443 345555554322 1345676777888887763211 11
Q ss_pred hcccHHHHHHHHhc--------cCCHHHHHHHHHHHHHhcccch
Q 044293 90 SMETIYRLNWIIQS--------SSSQETVKLASSLICSLAMLDK 125 (236)
Q Consensus 90 ~~g~i~~L~~lL~~--------~~~~~~~~~a~~~L~~Ls~~~~ 125 (236)
+......+++.+.. .++.|..-.++.+|.+|...+.
T Consensus 177 ~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~ 220 (253)
T 3gae_A 177 DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 220 (253)
T ss_dssp CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSG
T ss_pred hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcH
Confidence 13345566666652 1267888889999998886543
No 160
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=46.09 E-value=1e+02 Score=23.89 Aligned_cols=145 Identities=8% Similarity=-0.014 Sum_probs=91.2
Q ss_pred cHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcc--cchhhhh
Q 044293 52 AISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAM--LDKNKAR 129 (236)
Q Consensus 52 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~--~~~~~~~ 129 (236)
.++..-.+.+++..++|--|+.+|..+ . .....++.+...+..+.+=.+++.++.++..++. +++
T Consensus 72 ~~~la~~L~~~~~deVR~~Av~lLg~~-~--------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe---- 138 (240)
T 3l9t_A 72 IKKLAFLAYQSDVYQVRMYAVFLFGYL-S--------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK---- 138 (240)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHT-T--------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT----
T ss_pred HHHHHHHHHhCcchHHHHHHHHHHHhc-c--------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH----
Confidence 344444566677778888888888776 2 1123455555534334367889988888888775 222
Q ss_pred hcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC-Chh
Q 044293 130 FGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR-FDE 208 (236)
Q Consensus 130 i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~-~~~ 208 (236)
..++.+.....++|.-+++.|...+.--|..+..+.. -.-++|.+-.+..++ +.=+++.....|..++. +|+
T Consensus 139 ----~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~d--p~~ll~iL~~L~~D~-s~yVrKSVan~LrD~SK~~Pd 211 (240)
T 3l9t_A 139 ----KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKEN--PNEAIRRIADLKEDV-SEYVRKSVGNALRDISKKFPD 211 (240)
T ss_dssp ----TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTC--HHHHHHHHHTTTTCS-CHHHHHHHHHHHHHHHTTCHH
T ss_pred ----HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcC--HHHHHHHHHHhcCCh-HHHHHHHHHHHHHHHhhhCHH
Confidence 2678888999999999998888776443332111100 011344444455555 35678888999999996 677
Q ss_pred hHHHHHhc
Q 044293 209 GMIALTKT 216 (236)
Q Consensus 209 ~~~~i~~~ 216 (236)
.-..+++.
T Consensus 212 ~V~~~~~~ 219 (240)
T 3l9t_A 212 LVKIELKN 219 (240)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 76666653
No 161
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=32.75 E-value=1.1e+02 Score=21.68 Aligned_cols=70 Identities=11% Similarity=0.096 Sum_probs=49.7
Q ss_pred ccHHHHHHHHhc-cCCHHHHHHHHHHHHHhcccc--hhhhhhcccCcHHH-HHHhhcCC---CcHHHHHHHHHHHHHh
Q 044293 92 ETIYRLNWIIQS-SSSQETVKLASSLICSLAMLD--KNKARFGVAGTVQV-LVKAVSAP---SNPAGHHLLSSLAELV 162 (236)
Q Consensus 92 g~i~~L~~lL~~-~~~~~~~~~a~~~L~~Ls~~~--~~~~~i~~~g~i~~-Lv~lL~~~---~~~~~~~a~~aL~~L~ 162 (236)
.++..|.+-|++ . ++.++..|+.+|-.+..+- ....++....++.. |++++... ...+++.++..+..-+
T Consensus 53 ~a~ral~krl~~~~-n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 53 DALRAVKKRIVGNK-NFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence 456678888874 5 7888888998888887764 34566777889988 88988532 2356777776665444
No 162
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=30.42 E-value=2.7e+02 Score=24.11 Aligned_cols=138 Identities=14% Similarity=0.074 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHhhCCCCc-hhHHhhhcccHHHHHHHHhcc-C----CHHHHHHHHHHHHHhcccchhhhhhcccCcHHHH
Q 044293 66 IIRTLSLSILLNLSLNPD-LKQSLASMETIYRLNWIIQSS-S----SQETVKLASSLICSLAMLDKNKARFGVAGTVQVL 139 (236)
Q Consensus 66 ~~~~~a~~~L~~l~~~~~-~~~~i~~~g~i~~L~~lL~~~-~----~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L 139 (236)
..-+.+.-.|...+..+. ... ..++.+-++|.++ . |++........+...+..++.-+. =.+..+
T Consensus 51 ~Lie~~~LnL~~~t~~~~~~~~-----~ll~~Ik~iL~~~~~~~~lD~~~Li~Ll~~il~~~~Fd~VLev----ysve~i 121 (500)
T 3vld_A 51 TLLRKCSLNLVTVVSLPDMDVK-----PLLATIKRFLTSNVSYDSLNYDYLLDVVDKLVPMADFDDVLEV----YSAEDL 121 (500)
T ss_dssp HHHHHHHHHHHHSCSCCSCCCH-----HHHHHHHHHHHCSSCCTTCCHHHHHHHHHHHHHHSCHHHHHHH----SCHHHH
T ss_pred HHHHHHhhcchhcccCCcccHH-----HHHHHHHHHHcCCccccccCHHHHHHHHHHHHhcCCHHHHHHh----CCHHHH
Confidence 445666667777777665 222 2445677777332 2 677777777777777666654333 457899
Q ss_pred HHhhcCCCcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCC-hhh-HHHHHHHHHHHHcCChhhHHHHHhc
Q 044293 140 VKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTE-AED-LAGTSLAVLNLLARFDEGMIALTKT 216 (236)
Q Consensus 140 v~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~-~~~-~~~~a~~~L~~l~~~~~~~~~i~~~ 216 (236)
+.-|++++++....||.++. ....+..+...+.+..+++++-+.+ .-. +...+=.++..|+.+.=.|..+.+.
T Consensus 122 ~~aL~S~~~~l~~~~ckVI~----~s~pk~lfa~t~iidiLL~lyFd~~t~i~~vvn~IE~~~~~LssdeLirrril~n 196 (500)
T 3vld_A 122 VKALRSEIDPLKVAACRVIE----NSQPKGLFATSNIIDILLDILFDEKVENDKLITAIEKALERLSTDELIRRRLFDN 196 (500)
T ss_dssp HHHHTSSCHHHHHHHHHHHH----TCSSGGGGTTSSHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHTTSHHHHHHHHTT
T ss_pred HHHHhcCChHHHHHHHHHhc----ccCchhHhccChHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence 99999999999999999987 5556777778899999999997653 223 5444445666666666566666653
No 163
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=30.02 E-value=67 Score=21.29 Aligned_cols=68 Identities=12% Similarity=0.078 Sum_probs=37.4
Q ss_pred chHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhcc-C-CChHHHHHHHHHHH
Q 044293 3 APRVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSK-S-SSPIIRTLSLSILL 76 (236)
Q Consensus 3 ~~~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~-~-~~~~~~~~a~~~L~ 76 (236)
.+++......|-+.++..+++... ..|..|-.- +-..+.+.+. .|...|.-|+ + ++++++..|-.++.
T Consensus 11 e~ev~~i~k~L~k~~~~~~~~~~l---~~L~~L~~~-~iT~e~L~~T--~IGk~Vn~LrKh~~~~~V~~lAk~Lv~ 80 (103)
T 1wjt_A 11 EEELLRIAKKLEKMVSRKKTEGAL---DLLKKLNSC-QMSIQLLQTT--RIGVAVNGVRKHCSDKEVVSLAKVLIK 80 (103)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSSHH---HHHHHHHTS-CCCHHHHHHT--CHHHHHHHHHHHCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHH---HHHHHHhCC-CCCHHHHHHc--chhHHHHHHHccCCcHHHHHHHHHHHH
Confidence 345555555555555444433334 444444332 3356666654 5666666654 3 67888777666654
No 164
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=26.25 E-value=2.9e+02 Score=23.39 Aligned_cols=102 Identities=10% Similarity=0.081 Sum_probs=62.7
Q ss_pred CCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccC--------CChHHHHHHHHHHHhhCCCCch-hHHhh
Q 044293 19 SDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKS--------SSPIIRTLSLSILLNLSLNPDL-KQSLA 89 (236)
Q Consensus 19 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~--------~~~~~~~~a~~~L~~l~~~~~~-~~~i~ 89 (236)
+..+..+.-+++++.|+..+. ...+.+...+...+.+++.+.. .+..++..++.++.|++..-.. +.
T Consensus 273 ~~~~an~MltlR~laNlF~~~-~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~--- 348 (425)
T 3pst_A 273 NKNITLTMLTVRILVNCFNNE-NWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS--- 348 (425)
T ss_dssp CSSHHHHHHHHHHHHHHTTCT-TTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS---
T ss_pred CCChhHHHHHHHHHHHhcCCc-chHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---
Confidence 456777888999999998764 4333333321345566665432 1345666777788888764211 11
Q ss_pred hcccHHHHHHHHh-----c---cCCHHHHHHHHHHHHHhcccc
Q 044293 90 SMETIYRLNWIIQ-----S---SSSQETVKLASSLICSLAMLD 124 (236)
Q Consensus 90 ~~g~i~~L~~lL~-----~---~~~~~~~~~a~~~L~~Ls~~~ 124 (236)
+...++.+...+. . .++.|..-.++.+|.+|...+
T Consensus 349 ~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~ 391 (425)
T 3pst_A 349 DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 391 (425)
T ss_dssp CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 1234556677666 1 127899999999999988644
No 165
>1x9f_B Erythrocruorin, globin II, extracellular, globin AIII, globin B; crystal, dodecamer, allosteric, oxygen storage/transport complex; HET: HEM; 2.60A {Lumbricus terrestris} SCOP: a.1.1.2 PDB: 2gtl_B*
Probab=26.13 E-value=1.2e+02 Score=20.99 Aligned_cols=48 Identities=10% Similarity=0.081 Sum_probs=32.4
Q ss_pred CCchHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhc
Q 044293 1 MSAPRVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQT 49 (236)
Q Consensus 1 ~~~~~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~ 49 (236)
||+++ ...|...+..+.........-+...+..+-..+|+.+..|-..
T Consensus 4 ~s~~~-~~~V~~sw~~v~~~~~~~~~~g~~~y~rlF~~~P~~k~~F~~~ 51 (145)
T 1x9f_B 4 CGVLE-GLKVKSEWGRAYGSGHDREAFSQAIWRATFAQVPESRSLFKRV 51 (145)
T ss_dssp CCHHH-HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCGGGGGGGGGG
T ss_pred CCHHH-HHHHHHHHHHHHcccccHHHHHHHHHHHHHHhChHHHHHhHhc
Confidence 46666 6778888888864433344456666777777778888777665
No 166
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=25.01 E-value=1.5e+02 Score=24.97 Aligned_cols=41 Identities=12% Similarity=0.049 Sum_probs=29.3
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHH
Q 044293 7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLA 47 (236)
Q Consensus 7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~ 47 (236)
+..|.+|+.++.++|+.+|...-..|+.+-..-...|..+.
T Consensus 128 ~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Ir 168 (403)
T 3fga_B 128 QKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIR 168 (403)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 34688999999999999999887777765443344444443
No 167
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=23.89 E-value=2.3e+02 Score=21.12 Aligned_cols=112 Identities=13% Similarity=0.031 Sum_probs=66.8
Q ss_pred cHHHHHHHHhcc-----CCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCC---CcHHHHHHHHHHHHHhcC
Q 044293 93 TIYRLNWIIQSS-----SSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAP---SNPAGHHLLSSLAELVQF 164 (236)
Q Consensus 93 ~i~~L~~lL~~~-----~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~---~~~~~~~a~~aL~~L~~~ 164 (236)
.+|-++..+..+ .+.........+...|..++.-.-.---...+|+++..+-.. ....+..|+..|..+|..
T Consensus 41 LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~ 120 (196)
T 4atg_A 41 LVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDT 120 (196)
T ss_dssp THHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence 455555554432 156666677777777777664322222256778877766442 226889999999999984
Q ss_pred CCChHHHHHhCcHHHHHHHhcCCC-hhhHHHHHHHHHHHHc
Q 044293 165 HGNSTLAVRAGAVSELIHLIGSTE-AEDLAGTSLAVLNLLA 204 (236)
Q Consensus 165 ~~~~~~~~~~g~i~~lv~ll~~~~-~~~~~~~a~~~L~~l~ 204 (236)
..+.-.-.+..++..+.+.+.++. .....--|+..|..+.
T Consensus 121 ~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG 161 (196)
T 4atg_A 121 YSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILS 161 (196)
T ss_dssp HTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC
T ss_pred hCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhH
Confidence 433222334556677777776643 2333445666666554
No 168
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=20.87 E-value=1.9e+02 Score=23.83 Aligned_cols=102 Identities=11% Similarity=0.044 Sum_probs=61.0
Q ss_pred CCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhc----cC----CChHHHHHHHHHHHhhCCCCch-hHHhh
Q 044293 19 SDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLS----KS----SSPIIRTLSLSILLNLSLNPDL-KQSLA 89 (236)
Q Consensus 19 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL----~~----~~~~~~~~a~~~L~~l~~~~~~-~~~i~ 89 (236)
+..+..+.-+++++.|+..+...-+..+... ...+.+++.+ .. .+..++..++.++.|++..-.. +.
T Consensus 210 ~~~~~n~MltlR~laNlF~~~~~g~~ll~~~-~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~--- 285 (362)
T 3l3f_X 210 NKNITLTMLTVRILVNCFNNENWGVKLLESN-QVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS--- 285 (362)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSH-HHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCS---
T ss_pred CCChhHHHHHHHHHHHhccCcchHHHHHhcc-hhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---
Confidence 4567778889999999987643223333221 2234444443 21 1345666777788888764211 11
Q ss_pred hcccHHHHHHHHh-----c---cCCHHHHHHHHHHHHHhcccc
Q 044293 90 SMETIYRLNWIIQ-----S---SSSQETVKLASSLICSLAMLD 124 (236)
Q Consensus 90 ~~g~i~~L~~lL~-----~---~~~~~~~~~a~~~L~~Ls~~~ 124 (236)
+....+.+...+. . ..+.|..-.++.+|.+|...+
T Consensus 286 ~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~ 328 (362)
T 3l3f_X 286 DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 328 (362)
T ss_dssp CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 1234556777766 2 127899999999999988644
Done!