BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044294
(431 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3H0L|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
Length = 478
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 108/434 (24%), Positives = 175/434 (40%), Gaps = 66/434 (15%)
Query: 20 SSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIG 79
S +LPL G+ A+KD V+G T + + A A + + GA +G
Sbjct: 56 SLKERELPLFGIPIAVKDNILVEGEKTTCASK--ILENFVAPYDATVIERLKKAGALIVG 113
Query: 80 KTIMDEMAYSINGENKHYGTPTNPCAPDRVPXXXXXXXXXXXXXKLVDFSLGTDTGGSVR 139
KT +DE A + E + NP +RVP SLG+DTGGS+R
Sbjct: 114 KTNLDEFAMGSSTEYSAFFPTKNPWDLERVPGGSSGGSAASVAVLSAPVSLGSDTGGSIR 173
Query: 140 VPASYCGIFGFRPSHSAVSTAGVIPMAQSFDTVGWFAWDPKILNRVGRVLLQLADDVNLV 199
PAS+CG+ G +P++ VS G++ A S D +G F + +DV LV
Sbjct: 174 QPASFCGVIGIKPTYGRVSRYGLVAFASSLDQIGVFG--------------RRTEDVALV 219
Query: 200 RPSQVIFAEDCLQLSSIPSDRVTQGLVKSVEKLFGGHIIE--NVILGDYVKDKVPSLQHF 257
+ E + +P ++ + K V+ L G E L VK+ + ++F
Sbjct: 220 LEVISGWDEKDSTSAKVPVPEWSEEVKKEVKGLKIGLPKEFFEYELQPQVKE---AFENF 276
Query: 258 LSEGNKEQ-----------EYSIPXXXXXXXXXXXXQ--RY----------EFKNNHGDW 294
+ E KE +YSIP RY E+K+ +
Sbjct: 277 IKELEKEGFEIKEVSLPHVKYSIPTYYIIAPSEASSNLARYDGVRYGYRAKEYKDIFEMY 336
Query: 295 VTTVKPDLGPGISERV-----------WEAVRTSAQKIDVCQSVKTELRAALSALLGDHG 343
T GP + R+ ++A AQK V + + + A +
Sbjct: 337 ARTRDEGFGPEVKRRIMLGTFALSAGYYDAYYLKAQK--VRRLITNDFLKAFEEV----D 390
Query: 344 ILVIPTVPGPPPKL-QMDPSALEVFRARAFSLLSI-AGVSGFCQVSIPLGLHDNLPVAIS 401
++ PT P P K + + +E++ + +L++ A ++G +SIP+ D LPV
Sbjct: 391 VIASPTTPTLPFKFGERLENPIEMYLS---DILTVPANLAGLPAISIPIAWKDGLPVGGQ 447
Query: 402 LLAKHGSDGFLLNL 415
L+ KH + LL +
Sbjct: 448 LIGKHWDETTLLQI 461
>pdb|2DC0|A Chain A, Crystal Structure Of Amidase
pdb|2DC0|B Chain B, Crystal Structure Of Amidase
Length = 434
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 100/400 (25%), Positives = 157/400 (39%), Gaps = 49/400 (12%)
Query: 27 PLSGLTFAIKDIFDVDGHVTGFGN-------PDWARTHSAATSTAPAVLAVLSGGATSIG 79
PL GL +KD+F V G T G P+ AR AV + GA
Sbjct: 64 PLHGLPLTVKDLFPVKGMPTRAGTKAPLPPLPEEAR----------AVRRLREAGALLFA 113
Query: 80 KTIMDEMAYSINGENKHYGTPTNPCAPDRVPXXXXXXXXXXXXXKLVDFSLGTDTGGSVR 139
KT E+A I GEN G N P R + SLGTDTGGS+R
Sbjct: 114 KTNXHEIALGITGENPWTGPVRNAVDPSRQAGGSSGGSAVAVALGIGLASLGTDTGGSIR 173
Query: 140 VPASYCGIFGFRPSHSAVSTAGVIPMAQSFDTVGWFAWDPKILNRVGRVLLQLADDVNLV 199
+PA + G+ GF+PS+ VS G +P+++S D G + + + +L + + L
Sbjct: 174 IPAGFNGVVGFKPSYGRVSLEGALPLSRSTDHAGPLTRSVRDAHFLTEIL--AGESIPLE 231
Query: 200 RPSQVIFAEDCLQLSSIPSDRVTQGLVKSVEKLFGGHIIENVILGDYVKDKVPSLQHFLS 259
+F +P D + L V K F ++E+ +P+L+
Sbjct: 232 GVQNPVF--------GVPLDFLEGRLGVEVRKAF-TRLLED----------LPALR---- 268
Query: 260 EGNKEQEYSIPXXXXXXXXXXXXQRYEFKNNHGDWVTTVKPDLGPGISERVWEAVRTSAQ 319
+ +E S+P RYE H + P + E + + + +
Sbjct: 269 --AEVREVSLPLEGVYEVYTRLV-RYEAARIHEKALKEHPEGFSPQVREALLAGLALTEK 325
Query: 320 KIDVCQSVKTELRAALSALLGDHGILVIPTVPGPPPKLQMDPSALEVFRA---RAFSLLS 376
+ + LR L L L++P P P P L + LE R AF L+
Sbjct: 326 DYRDAVAEREALRLELVKALRGVDALLLPVQPLPAPPLGTEEVELESGRKGHREAFITLT 385
Query: 377 IA-GVSGFCQVSIPLGLHDNLPVAISLLAKHGSDGFLLNL 415
+ + G +++P + PV + ++ +G DG +L L
Sbjct: 386 LPFSLLGVPTLALPFAKVEGXPVGLQVVGAYGEDGKVLAL 425
>pdb|3KFU|E Chain E, Crystal Structure Of The Transamidosome
pdb|3KFU|H Chain H, Crystal Structure Of The Transamidosome
Length = 471
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 86/175 (49%), Gaps = 5/175 (2%)
Query: 5 DSDYGAFM---EKFVLQPSSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAAT 61
D GAF+ E+ + + + LPL+GL A+KD G T G+
Sbjct: 32 DPGLGAFLSLNERLLEEAEAVDPGLPLAGLVVAVKDNIATRGLRTTAGSRLLENFVPPYE 91
Query: 62 STAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPCAPDRVPXXXXXXXXXXX 121
+TA A L L GA +GKT +DE + E+ + NP PDRVP
Sbjct: 92 ATAVARLKAL--GALVLGKTNLDEFGMGSSTEHSAFFPTKNPFDPDRVPGGSSGGSAAAL 149
Query: 122 XXKLVDFSLGTDTGGSVRVPASYCGIFGFRPSHSAVSTAGVIPMAQSFDTVGWFA 176
L +LG+DTGGSVR PA++CG++G +P++ VS G+I A S D +G A
Sbjct: 150 AADLAPLALGSDTGGSVRQPAAFCGVYGLKPTYGRVSRFGLIAYASSLDQIGPMA 204
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 324 CQSVKTELRAALSALLGDHGILVIPTVPGP--PPKLQMDPSALEVFRARAFSLLSIAGVS 381
Q+ + L+A AL + +L++PT P P P + DP L ++R +++ A ++
Sbjct: 361 AQAFRRRLKAEAQALFREVDLLLLPTTPHPAFPFGARRDP--LAMYREDLYTV--GANLT 416
Query: 382 GFCQVSIPLGLHDNLPVAISLLAKHGSDGFLLN 414
G +S P G +LPV + LLA G D LL
Sbjct: 417 GLPALSFPAGFEGHLPVGLQLLAPWGEDERLLR 449
>pdb|3AL0|A Chain A, Crystal Structure Of The Glutamine Transamidosome From
Thermotoga Maritima In The Glutamylation State
Length = 475
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 85/390 (21%), Positives = 155/390 (39%), Gaps = 53/390 (13%)
Query: 64 APAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPCAPDRVPXXXXXXXXXXXXX 123
A V + G +GK +DE A + E + NP +RVP
Sbjct: 92 ATVVKKMKEAGFVVVGKANLDEFAMGSSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSA 151
Query: 124 KLVDFSLGTDTGGSVRVPASYCGIFGFRPSHSAVSTAGVIPMAQSFDTVGWFAW------ 177
+V +LG+DTGGSVR PAS CG+ G++P++ VS G++ A S D +G
Sbjct: 152 GMVVAALGSDTGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAA 211
Query: 178 ------------DPKILNRVGRVLLQLADDVNLVRPS--QVIFAEDCLQLSSIPSDRVTQ 223
D +NR L ++ + V+ ++ + + I+ D + S+R +
Sbjct: 212 ILMEIISGRDENDATTVNRKVDFLSEIEEGVSGMKFAVPEEIYEHD---IEEGVSERFEE 268
Query: 224 GLVKSVEKLFGGHIIENVILGDYVKDKVPSLQHFLSEGNKEQEYSIPXXXXXXXXXXXXQ 283
L K +E+L G +E V K+P +++ ++
Sbjct: 269 AL-KLLERL--GAKVERV--------KIPHIKYSVATYYVIAPAEASSNLARFDGVKYGL 317
Query: 284 RYEFKNNHGDWVTTVKPDLGPGISERV-----------WEAVRTSAQKIDVCQSVKTELR 332
R + K ++ T G + R+ +EA A K V+ ++
Sbjct: 318 RIKEKGLREMYMKTRNVGFGEEVRRRIMIGTFTLSAAYYEAYFNKAMK------VRRKIS 371
Query: 333 AALSALLGDHGILVIPTVPGPPPKLQMDPSALEVFRARAFSLLSIAGVSGFCQVSIPLGL 392
L+ +L + ++ PT P K+ L + F++ A ++G +S+P G
Sbjct: 372 DELNEVLSQYDAILTPTSPVTAFKIGEIKDPLTYYLMDIFTIP--ANLAGLPAISVPFGF 429
Query: 393 HDNLPVAISLLAKHGSDGFLLNLVETLHNT 422
+NLPV + ++ + +DG + + +
Sbjct: 430 SNNLPVGVQVIGRRFADGKVFRIARAIEKN 459
>pdb|3A1K|A Chain A, Crystal Structure Of Rhodococcus Sp. N771 Amidase
Length = 521
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 110/445 (24%), Positives = 175/445 (39%), Gaps = 61/445 (13%)
Query: 28 LSGLTFAIKDIFDVDGHVTGFGNP--DWARTHSAATST--APAVLAVLSGGATSIGKTIM 83
L+G AIKD +VT G P + +RT T + A V +L+ GAT GK +
Sbjct: 88 LTGRRVAIKD------NVTVAGVPMMNGSRTVEGFTPSRDATVVTRLLAAGATVAGKAVC 141
Query: 84 DEMAYSINGENKHYGTPTNPCAPDRVPXXXXXXXXXXXXXKLVDFSLGTDTGGSVRVPAS 143
+++ +S + G NP R VDF++G D GGS+R+PA+
Sbjct: 142 EDLCFSGSSFTPASGPVRNPWDRQREAGGSSGGSAALVANGDVDFAIGGDQGGSIRIPAA 201
Query: 144 YCGIFGFRPSHSAVSTAGVIPMAQSFDTVGWFAWDPKILNRVGRVLLQLA----DDVNLV 199
+CG+ G +P+ V G P+ ++ D +G I V L L+ D N
Sbjct: 202 FCGVVGHKPTFGLVPYTGAFPIERTIDHLG------PITRTVHDAALMLSVIAGRDGNDP 255
Query: 200 RPSQVIFAEDCLQLSSIPSDRVTQGLVKSVEKLFGGHIIENVILGDYVKDKVPSLQHFLS 259
R + + A D LS++ SD GL + + GH + V D V + H L+
Sbjct: 256 RQADSVEAGD--YLSTLDSD--VDGLRIGIVREGFGHAVSQ----PEVDDAVRAAAHSLT 307
Query: 260 E-GNKEQEYSIPXXXXX----XXXXXXXQRYEFKNNHGDWVTT---VKPDL--------- 302
E G +E +IP Y+ + +G + P+L
Sbjct: 308 EIGCTVEEVNIPWHLHAFHIWNVIATDGGAYQMLDGNGYGMNAEGLYDPELMAHFASRRI 367
Query: 303 --GPGISERVWEAVRTSAQKIDV--------CQSVKTELRAALSALLGDHGILVIPTVPG 352
+SE V T I +++ RAA L +LV+PT+P
Sbjct: 368 QHADALSETVKLVALTGHHGITTLGGASYGKARNLVPLARAAYDTALRQFDVLVMPTLPY 427
Query: 353 PPPKLQMDPSALEVFRARAFSLLSIAG---VSGFCQVSIPLGLHDNLPVAISLLAKHGSD 409
+L F +A +++ V+G +S+P GL + LPV + + +H D
Sbjct: 428 VASELPAKDVDRATFITKALGMIANTAPFDVTGHPSLSVPAGLVNGLPVGMMITGRHFDD 487
Query: 410 GFLLNL---VETLHNTLKEELQRMS 431
+L + E L +R S
Sbjct: 488 ATVLRVGRAFEKLRGAFPTPAERAS 512
>pdb|3A1I|A Chain A, Crystal Structure Of Rhodococcus Sp. N-771 Amidase
Complexed With Benzamide
Length = 521
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 109/445 (24%), Positives = 175/445 (39%), Gaps = 61/445 (13%)
Query: 28 LSGLTFAIKDIFDVDGHVTGFGNP--DWARTHSAATST--APAVLAVLSGGATSIGKTIM 83
L+G AIKD +VT G P + +RT T + A V +L+ GAT GK +
Sbjct: 88 LTGRRVAIKD------NVTVAGVPMMNGSRTVEGFTPSRDATVVTRLLAAGATVAGKAVC 141
Query: 84 DEMAYSINGENKHYGTPTNPCAPDRVPXXXXXXXXXXXXXKLVDFSLGTDTGGSVRVPAS 143
+++ +S + G NP R VDF++G D GG++R+PA+
Sbjct: 142 EDLCFSGSSFTPASGPVRNPWDRQREAGGSSGGSAALVANGDVDFAIGGDQGGAIRIPAA 201
Query: 144 YCGIFGFRPSHSAVSTAGVIPMAQSFDTVGWFAWDPKILNRVGRVLLQLA----DDVNLV 199
+CG+ G +P+ V G P+ ++ D +G I V L L+ D N
Sbjct: 202 FCGVVGHKPTFGLVPYTGAFPIERTIDHLG------PITRTVHDAALMLSVIAGRDGNDP 255
Query: 200 RPSQVIFAEDCLQLSSIPSDRVTQGLVKSVEKLFGGHIIENVILGDYVKDKVPSLQHFLS 259
R + + A D LS++ SD GL + + GH + V D V + H L+
Sbjct: 256 RQADSVEAGD--YLSTLDSD--VDGLRIGIVREGFGHAVSQ----PEVDDAVRAAAHSLT 307
Query: 260 E-GNKEQEYSIPXXXXX----XXXXXXXQRYEFKNNHGDWVTT---VKPDL--------- 302
E G +E +IP Y+ + +G + P+L
Sbjct: 308 EIGCTVEEVNIPWHLHAFHIWNVIATDGGAYQMLDGNGYGMNAEGLYDPELMAHFASRRI 367
Query: 303 --GPGISERVWEAVRTSAQKIDV--------CQSVKTELRAALSALLGDHGILVIPTVPG 352
+SE V T I +++ RAA L +LV+PT+P
Sbjct: 368 QHADALSETVKLVALTGHHGITTLGGASYGKARNLVPLARAAYDTALRQFDVLVMPTLPY 427
Query: 353 PPPKLQMDPSALEVFRARAFSLLSIAG---VSGFCQVSIPLGLHDNLPVAISLLAKHGSD 409
+L F +A +++ V+G +S+P GL + LPV + + +H D
Sbjct: 428 VASELPAKDVDRATFITKALGMIANTAPFDVTGHPSLSVPAGLVNGLPVGMMITGRHFDD 487
Query: 410 GFLLNL---VETLHNTLKEELQRMS 431
+L + E L +R S
Sbjct: 488 ATVLRVGRAFEKLRGAFPTPAERAS 512
>pdb|4GYR|A Chain A, Granulibacter Bethesdensis Allophanate Hydrolase Apo
pdb|4GYR|B Chain B, Granulibacter Bethesdensis Allophanate Hydrolase Apo
pdb|4GYS|A Chain A, Granulibacter Bethesdensis Allophanate Hydrolase
Co-crystallized With Malonate
pdb|4GYS|B Chain B, Granulibacter Bethesdensis Allophanate Hydrolase
Co-crystallized With Malonate
Length = 621
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 74/157 (47%), Gaps = 3/157 (1%)
Query: 20 SSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIG 79
+S A PL G+ FA+KD DV G P + A V + + GA +G
Sbjct: 87 ASPATGKPLYGVPFAVKDNIDVAGLPCSAACPAFTYEPD---RDATVVARLRAAGAIVLG 143
Query: 80 KTIMDEMAYSINGENKHYGTPTNPCAPDRVPXXXXXXXXXXXXXKLVDFSLGTDTGGSVR 139
KT +D+ A + G +G P D + LV FSLGTDT GS R
Sbjct: 144 KTNLDQFATGLVGTRSPFGAPRCVFDQDYISGGSSSGSAVAVAAGLVAFSLGTDTAGSGR 203
Query: 140 VPASYCGIFGFRPSHSAVSTAGVIPMAQSFDTVGWFA 176
VPA++ + G +P+ +ST+GV+P +S D V FA
Sbjct: 204 VPAAFNNLVGVKPTKGLLSTSGVVPACRSLDCVTVFA 240
>pdb|2GI3|A Chain A, Crystal Structure Of Glutamyl-Trna(Gln) Amidotransferase
Subunit A (Tm1272) From Thermotoga Maritima At 1.80 A
Resolution
Length = 476
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 85/390 (21%), Positives = 151/390 (38%), Gaps = 53/390 (13%)
Query: 64 APAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPCAPDRVPXXXXXXXXXXXXX 123
A V G +GK +DE A + E + NP +RVP
Sbjct: 93 ATVVKKXKEAGFVVVGKANLDEFAXGSSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSA 152
Query: 124 KLVDFSLGTDTGGSVRVPASYCGIFGFRPSHSAVSTAGVIPMAQSFDTV----------- 172
V +LG+DTGGSVR PAS CG+ G++P++ VS G++ A S D +
Sbjct: 153 GXVVAALGSDTGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAA 212
Query: 173 -------GWFAWDPKILNRVGRVLLQLADDVNLVRPS--QVIFAEDCLQLSSIPSDRVTQ 223
G D +NR L ++ + V+ + + + I+ D + S+R +
Sbjct: 213 ILXEIISGRDENDATTVNRKVDFLSEIEEGVSGXKFAVPEEIYEHD---IEEGVSERFEE 269
Query: 224 GLVKSVEKLFGGHIIENVILGDYVKDKVPSLQHFLSEGNKEQEYSIPXXXXXXXXXXXXQ 283
L K +E+L G +E V K+P +++ ++
Sbjct: 270 AL-KLLERL--GAKVERV--------KIPHIKYSVATYYVIAPAEASSNLARFDGVKYGL 318
Query: 284 RYEFKNNHGDWVTTVKPDLGPGISERV-----------WEAVRTSAQKIDVCQSVKTELR 332
R + K + T G + R+ +EA A K V+ ++
Sbjct: 319 RIKEKGLREXYXKTRNVGFGEEVRRRIXIGTFTLSAAYYEAYFNKAXK------VRRKIS 372
Query: 333 AALSALLGDHGILVIPTVPGPPPKLQMDPSALEVFRARAFSLLSIAGVSGFCQVSIPLGL 392
L+ +L + ++ PT P K+ L + F++ A ++G +S+P G
Sbjct: 373 DELNEVLSQYDAILTPTSPVTAFKIGEIKDPLTYYLXDIFTIP--ANLAGLPAISVPFGF 430
Query: 393 HDNLPVAISLLAKHGSDGFLLNLVETLHNT 422
+NLPV + ++ + +DG + + +
Sbjct: 431 SNNLPVGVQVIGRRFADGKVFRIARAIEKN 460
>pdb|2DF4|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Mn2+
pdb|2DQN|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Asn
pdb|2G5H|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
pdb|2G5I|A Chain A, Structure Of Trna-dependent Amidotransferase Gatcab
Complexed With Adp-alf4
pdb|3IP4|A Chain A, The High Resolution Structure Of Gatcab
pdb|2F2A|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Gln
Length = 485
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 51/99 (51%)
Query: 75 ATSIGKTIMDEMAYSINGENKHYGTPTNPCAPDRVPXXXXXXXXXXXXXKLVDFSLGTDT 134
A IGK MDE A + E ++ NP VP LV SLG+DT
Sbjct: 116 AVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPLSLGSDT 175
Query: 135 GGSVRVPASYCGIFGFRPSHSAVSTAGVIPMAQSFDTVG 173
GGS+R PA+YCG+ G +P++ VS G++ A S D +G
Sbjct: 176 GGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIG 214
>pdb|1OBL|A Chain A, Crystal Structure Of The S133a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
pdb|1OBL|B Chain B, Crystal Structure Of The S133a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
Length = 414
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 71/172 (41%), Gaps = 10/172 (5%)
Query: 15 FVLQPSSSAHQL--PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLS 72
FV S+ Q PL G+ IKDI D T G+ + S AP V+ +
Sbjct: 39 FVRHDKSARAQASGPLRGIAVGIKDIIDTANMPTEMGSEIYRGWQP--RSDAPVVMMLKR 96
Query: 73 GGATSIGKTIMDEMAYSINGENKHYGTPTNPCAPDRVPXXXXXXXXXXXXXKLVDFSLGT 132
GAT IGKT A ++ NP P ++ +LGT
Sbjct: 97 AGATIIGKTTTTAFA------SRDPTATLNPHNTGHSPGGSSAGSAAAVGAGMIPLALGT 150
Query: 133 DTGGSVRVPASYCGIFGFRPSHSAVSTAGVIPMAQSFDTVGWFAWDPKILNR 184
TGGSV PA+YCG +PS + T GV + + DTVG F + L R
Sbjct: 151 QTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLAR 202
>pdb|1O9O|A Chain A, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonamate From Bradyrhizobium Japonicum
pdb|1O9O|B Chain B, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonamate From Bradyrhizobium Japonicum
pdb|1O9P|A Chain A, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
pdb|1O9P|B Chain B, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
Length = 414
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 71/172 (41%), Gaps = 10/172 (5%)
Query: 15 FVLQPSSSAHQL--PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLS 72
FV S+ Q PL G+ IKDI D T G+ + S AP V+ +
Sbjct: 39 FVRHDKSARAQASGPLRGIAVGIKDIIDTANMPTEMGSEIYRGWQP--RSDAPVVMMLKR 96
Query: 73 GGATSIGKTIMDEMAYSINGENKHYGTPTNPCAPDRVPXXXXXXXXXXXXXKLVDFSLGT 132
GAT IGKT A ++ NP P ++ +LGT
Sbjct: 97 AGATIIGKTTTTAFA------SRDPTATLNPHNTGHSPGGASSGSAAAVGAGMIPLALGT 150
Query: 133 DTGGSVRVPASYCGIFGFRPSHSAVSTAGVIPMAQSFDTVGWFAWDPKILNR 184
TGGSV PA+YCG +PS + T GV + + DTVG F + L R
Sbjct: 151 QTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLAR 202
>pdb|1OCK|A Chain A, The Crystal Structure Of Malonamidase E2 From
Bradyrhizobium Japonicum
pdb|1OCK|B Chain B, The Crystal Structure Of Malonamidase E2 From
Bradyrhizobium Japonicum
pdb|1OCL|A Chain A, The Crystal Structure Of Malonamidase E2 Complexed With
Malonate From Bradyrhizobium Japonicum
pdb|1OCL|B Chain B, The Crystal Structure Of Malonamidase E2 Complexed With
Malonate From Bradyrhizobium Japonicum
pdb|1OCM|A Chain A, The Crystal Structure Of Malonamidase E2 Covalently
Complexed With Pyrophosphate From Bradyrhizobium
Japonicum
pdb|1OCM|B Chain B, The Crystal Structure Of Malonamidase E2 Covalently
Complexed With Pyrophosphate From Bradyrhizobium
Japonicum
Length = 412
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 71/172 (41%), Gaps = 10/172 (5%)
Query: 15 FVLQPSSSAHQL--PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLS 72
FV S+ Q PL G+ IKDI D T G+ + S AP V+ +
Sbjct: 39 FVRHDKSARAQASGPLRGIAVGIKDIIDTANMPTEMGSEIYRGWQP--RSDAPVVMMLKR 96
Query: 73 GGATSIGKTIMDEMAYSINGENKHYGTPTNPCAPDRVPXXXXXXXXXXXXXKLVDFSLGT 132
GAT IGKT A ++ NP P ++ +LGT
Sbjct: 97 AGATIIGKTTTTAFA------SRDPTATLNPHNTGHSPGGSSSGSAAAVGAGMIPLALGT 150
Query: 133 DTGGSVRVPASYCGIFGFRPSHSAVSTAGVIPMAQSFDTVGWFAWDPKILNR 184
TGGSV PA+YCG +PS + T GV + + DTVG F + L R
Sbjct: 151 QTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLAR 202
>pdb|1OBK|A Chain A, Crystal Structure Of The R158q Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OBK|B Chain B, Crystal Structure Of The R158q Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 71/172 (41%), Gaps = 10/172 (5%)
Query: 15 FVLQPSSSAHQL--PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLS 72
FV S+ Q PL G+ IKDI D T G+ + S AP V+ +
Sbjct: 39 FVRHDKSARAQASGPLRGIAVGIKDIIDTANMPTEMGSEIYRGWQP--RSDAPVVMMLKR 96
Query: 73 GGATSIGKTIMDEMAYSINGENKHYGTPTNPCAPDRVPXXXXXXXXXXXXXKLVDFSLGT 132
GAT IGKT A ++ NP P ++ +LGT
Sbjct: 97 AGATIIGKTTTTAFA------SRDPTATLNPHNTGHSPGGSSSGSAAAVGAGMIPLALGT 150
Query: 133 DTGGSVRVPASYCGIFGFRPSHSAVSTAGVIPMAQSFDTVGWFAWDPKILNR 184
TGGSV PA+YCG +PS + T GV + + DTVG F + L R
Sbjct: 151 QTGGSVIQPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLAR 202
>pdb|1OBI|A Chain A, Crystal Structure Of The G130a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OBI|B Chain B, Crystal Structure Of The G130a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 71/172 (41%), Gaps = 10/172 (5%)
Query: 15 FVLQPSSSAHQL--PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLS 72
FV S+ Q PL G+ IKDI D T G+ + S AP V+ +
Sbjct: 39 FVRHDKSARAQASGPLRGIAVGIKDIIDTANMPTEMGSEIYRGWQP--RSDAPVVMMLKR 96
Query: 73 GGATSIGKTIMDEMAYSINGENKHYGTPTNPCAPDRVPXXXXXXXXXXXXXKLVDFSLGT 132
GAT IGKT A ++ NP P ++ +LGT
Sbjct: 97 AGATIIGKTTTTAFA------SRDPTATLNPHNTGHSPGASSSGSAAAVGAGMIPLALGT 150
Query: 133 DTGGSVRVPASYCGIFGFRPSHSAVSTAGVIPMAQSFDTVGWFAWDPKILNR 184
TGGSV PA+YCG +PS + T GV + + DTVG F + L R
Sbjct: 151 QTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLAR 202
>pdb|1O9Q|A Chain A, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1O9Q|B Chain B, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OCH|A Chain A, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OCH|B Chain B, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 70/172 (40%), Gaps = 10/172 (5%)
Query: 15 FVLQPSSSAHQL--PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLS 72
FV S+ Q PL G+ IKDI D T G+ + S AP V+ +
Sbjct: 39 FVRHDKSARAQASGPLRGIAVGIKDIIDTANMPTEMGSEIYRGWQP--RSDAPVVMMLKR 96
Query: 73 GGATSIGKTIMDEMAYSINGENKHYGTPTNPCAPDRVPXXXXXXXXXXXXXKLVDFSLGT 132
GAT IGKT A ++ NP P ++ +LGT
Sbjct: 97 AGATIIGKTTTTAFA------SRDPTATLNPHNTGHSPGGSSSGSAAAVGAGMIPLALGT 150
Query: 133 DTGGSVRVPASYCGIFGFRPSHSAVSTAGVIPMAQSFDTVGWFAWDPKILNR 184
TGG V PA+YCG +PS + T GV + + DTVG F + L R
Sbjct: 151 QTGGXVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLAR 202
>pdb|1OBJ|A Chain A, Crystal Structure Of The T150a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OBJ|B Chain B, Crystal Structure Of The T150a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 70/172 (40%), Gaps = 10/172 (5%)
Query: 15 FVLQPSSSAHQL--PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLS 72
FV S+ Q PL G+ IKDI D T G+ + S AP V+ +
Sbjct: 39 FVRHDKSARAQASGPLRGIAVGIKDIIDTANMPTEMGSEIYRGWQP--RSDAPVVMMLKR 96
Query: 73 GGATSIGKTIMDEMAYSINGENKHYGTPTNPCAPDRVPXXXXXXXXXXXXXKLVDFSLGT 132
GAT IGKT A ++ NP P ++ +LG
Sbjct: 97 AGATIIGKTTTTAFA------SRDPTATLNPHNTGHSPGGSSSGSAAAVGAGMIPLALGA 150
Query: 133 DTGGSVRVPASYCGIFGFRPSHSAVSTAGVIPMAQSFDTVGWFAWDPKILNR 184
TGGSV PA+YCG +PS + T GV + + DTVG F + L R
Sbjct: 151 QTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLAR 202
>pdb|1O9N|A Chain A, Crystal Structure Of The K62a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1O9N|B Chain B, Crystal Structure Of The K62a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 70/172 (40%), Gaps = 10/172 (5%)
Query: 15 FVLQPSSSAHQL--PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLS 72
FV S+ Q PL G+ I DI D T G+ + S AP V+ +
Sbjct: 39 FVRHDKSARAQASGPLRGIAVGIADIIDTANMPTEMGSEIYRGWQP--RSDAPVVMMLKR 96
Query: 73 GGATSIGKTIMDEMAYSINGENKHYGTPTNPCAPDRVPXXXXXXXXXXXXXKLVDFSLGT 132
GAT IGKT A ++ NP P ++ +LGT
Sbjct: 97 AGATIIGKTTTTAFA------SRDPTATLNPHNTGHSPGGSSSGSAAAVGAGMIPLALGT 150
Query: 133 DTGGSVRVPASYCGIFGFRPSHSAVSTAGVIPMAQSFDTVGWFAWDPKILNR 184
TGGSV PA+YCG +PS + T GV + + DTVG F + L R
Sbjct: 151 QTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLAR 202
>pdb|1M21|A Chain A, Crystal Structure Analysis Of The Peptide Amidase Pam In
Complex With The Competitive Inhibitor Chymostatin
pdb|1M21|B Chain B, Crystal Structure Analysis Of The Peptide Amidase Pam In
Complex With The Competitive Inhibitor Chymostatin
pdb|1M22|A Chain A, X-Ray Structure Of Native Peptide Amidase From
Stenotrophomonas Maltophilia At 1.4 A
pdb|1M22|B Chain B, X-Ray Structure Of Native Peptide Amidase From
Stenotrophomonas Maltophilia At 1.4 A
Length = 503
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 50/108 (46%), Gaps = 5/108 (4%)
Query: 74 GATSIGKTIMDEMAY-----SINGENKHYGTPTNPCAPDRVPXXXXXXXXXXXXXKLVDF 128
GA +GKT + E A SI+G + G NP P L
Sbjct: 121 GAVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRISHSPCGSSSGSAVAVAANLASV 180
Query: 129 SLGTDTGGSVRVPASYCGIFGFRPSHSAVSTAGVIPMAQSFDTVGWFA 176
++GT+T GS+ PA+ G+ G +P+ VS G+IP++ S DT G A
Sbjct: 181 AIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMA 228
>pdb|3A2P|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase
Length = 493
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 88/224 (39%), Gaps = 13/224 (5%)
Query: 27 PLSGLTFAIKDIFDV-DGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDE 85
P +G+ + +KD+ V G + + A A V + + G +GKT E
Sbjct: 63 PFAGVPYLLKDLTVVSQGDINTSSIKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPE 122
Query: 86 MAYSINGENKHYGTPTNPCAPDRVPXXXXXXXXXXXXXKLVDFSLGTDTGGSVRVPASYC 145
M + E + +G NP R L + G D GSVR+PAS C
Sbjct: 123 MGNQVTTEPEAWGATRNPWNLGRSVGGSSGGSGAAVAAALSPVAHGNDAAGSVRIPASVC 182
Query: 146 GIFGFRPSHSAVSTAGVIPMAQSFDTVGWFAWDPKILNRVGRVLLQLADDVNLVRPSQVI 205
G+ G +P+ +S P+ D V A + + R R + L D V+ RP
Sbjct: 183 GVVGLKPTRGRISPG---PLVTDSDNVAGAAHE-GLFARSVRDIAALLDVVSGHRPGDTF 238
Query: 206 FAEDCLQLSSIPSDRVTQGLVKSVEKLFGGHIIENVILGDYVKD 249
C +S P QG+ ++ L G + N + GD+ D
Sbjct: 239 ----CAPTASRP---YAQGISENPGSLRVGVLTHNPV-GDFALD 274
>pdb|3A2Q|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase
Complexed With Substrate
Length = 493
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 88/224 (39%), Gaps = 13/224 (5%)
Query: 27 PLSGLTFAIKDIFDV-DGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDE 85
P +G+ + +KD+ V G + + A A V + + G +GKT E
Sbjct: 63 PFAGVPYLLKDLTVVSQGDINTSSIKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPE 122
Query: 86 MAYSINGENKHYGTPTNPCAPDRVPXXXXXXXXXXXXXKLVDFSLGTDTGGSVRVPASYC 145
M + E + +G NP R L + G D G+VR+PAS C
Sbjct: 123 MGNQVTTEPEAWGATRNPWNLGRSVGGSSGGSGAAVAAALSPVAHGNDAAGAVRIPASVC 182
Query: 146 GIFGFRPSHSAVSTAGVIPMAQSFDTVGWFAWDPKILNRVGRVLLQLADDVNLVRPSQVI 205
G+ G +P+ +S P+ D V A + + R R + L D V+ RP
Sbjct: 183 GVVGLKPTRGRISPG---PLVTDSDNVAGAAHE-GLFARSVRDIAALLDVVSGHRPGDTF 238
Query: 206 FAEDCLQLSSIPSDRVTQGLVKSVEKLFGGHIIENVILGDYVKD 249
C +S P QG+ ++ L G + N + GD+ D
Sbjct: 239 ----CAPTASRP---YAQGISENPGSLRVGVLTHNPV-GDFALD 274
>pdb|2WAP|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845
pdb|2WAP|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845
Length = 543
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 64/146 (43%), Gaps = 4/146 (2%)
Query: 18 QPSSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLS-GGAT 76
Q S + Q L G+ ++K+ F GH + G + + + V+ VL GA
Sbjct: 94 QLSQAPRQGLLYGVPVSLKECFSYKGHDSTLG---LSLNEGMPSESDCVVVQVLKLQGAV 150
Query: 77 SIGKTIMDEMAYSINGENKHYGTPTNPCAPDRVPXXXXXXXXXXXXXKLVDFSLGTDTGG 136
T + + +S + N +G NP + P LGTD GG
Sbjct: 151 PFVHTNVPQSMFSYDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGG 210
Query: 137 SVRVPASYCGIFGFRPSHSAVSTAGV 162
S+R P+++CGI G +P+ + +S +G+
Sbjct: 211 SIRFPSAFCGICGLKPTGNRLSKSGL 236
>pdb|2VYA|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase Conjugated
With The Drug-Like Inhibitor Pf-750
pdb|2VYA|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase Conjugated
With The Drug-Like Inhibitor Pf-750
Length = 587
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 64/146 (43%), Gaps = 4/146 (2%)
Query: 18 QPSSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLS-GGAT 76
Q S + Q L G+ ++K+ F GH + G + + + V+ VL GA
Sbjct: 132 QLSQAPRQGLLYGVPVSLKECFSYKGHDSTLG---LSLNEGMPSESDCVVVQVLKLQGAV 188
Query: 77 SIGKTIMDEMAYSINGENKHYGTPTNPCAPDRVPXXXXXXXXXXXXXKLVDFSLGTDTGG 136
T + + +S + N +G NP + P LGTD GG
Sbjct: 189 PFVHTNVPQSMFSYDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGG 248
Query: 137 SVRVPASYCGIFGFRPSHSAVSTAGV 162
S+R P+++CGI G +P+ + +S +G+
Sbjct: 249 SIRFPSAFCGICGLKPTGNRLSKSGL 274
>pdb|2WJ1|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(4-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|2WJ1|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(4-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|2WJ2|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(5-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|2WJ2|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(5-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|3K7F|A Chain A, Crystal Structure Analysis Of A
PhenhexylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase'
pdb|3K7F|B Chain B, Crystal Structure Analysis Of A
PhenhexylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase'
pdb|3K83|A Chain A, Crystal Structure Analysis Of A
BiphenylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3K83|B Chain B, Crystal Structure Analysis Of A
BiphenylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3K84|A Chain A, Crystal Structure Analysis Of A OleylOXADIAZOLEPYRIDINE
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3K84|B Chain B, Crystal Structure Analysis Of A OleylOXADIAZOLEPYRIDINE
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3LJ6|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845 At 2.42a Resolution
pdb|3LJ6|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845 At 2.42a Resolution
pdb|3LJ7|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With Carbamate Inhibitor
Urb597
pdb|3LJ7|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With Carbamate Inhibitor
Urb597
pdb|3OJ8|A Chain A, Alpha-Ketoheterocycle Inhibitors Of Fatty Acid Amide
Hydrolase Containing Additional Conformational
Contraints In The Acyl Side Chain
pdb|3OJ8|B Chain B, Alpha-Ketoheterocycle Inhibitors Of Fatty Acid Amide
Hydrolase Containing Additional Conformational
Contraints In The Acyl Side Chain
pdb|3PPM|A Chain A, Crystal Structure Of A Noncovalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
pdb|3PPM|B Chain B, Crystal Structure Of A Noncovalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
pdb|3PR0|A Chain A, Crystal Structure Of A Covalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
pdb|3PR0|B Chain B, Crystal Structure Of A Covalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
Length = 573
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 64/146 (43%), Gaps = 4/146 (2%)
Query: 18 QPSSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLS-GGAT 76
Q S + Q L G+ ++K+ F GH + G + + + V+ VL GA
Sbjct: 118 QLSQAPRQGLLYGVPVSLKECFSYKGHDSTLG---LSLNEGMPSESDCVVVQVLKLQGAV 174
Query: 77 SIGKTIMDEMAYSINGENKHYGTPTNPCAPDRVPXXXXXXXXXXXXXKLVDFSLGTDTGG 136
T + + +S + N +G NP + P LGTD GG
Sbjct: 175 PFVHTNVPQSMFSYDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGG 234
Query: 137 SVRVPASYCGIFGFRPSHSAVSTAGV 162
S+R P+++CGI G +P+ + +S +G+
Sbjct: 235 SIRFPSAFCGICGLKPTGNRLSKSGL 260
>pdb|4HBP|A Chain A, Crystal Structure Of Faah In Complex With Inhibitor
pdb|4HBP|B Chain B, Crystal Structure Of Faah In Complex With Inhibitor
Length = 550
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 63/146 (43%), Gaps = 4/146 (2%)
Query: 18 QPSSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLS-GGAT 76
Q S + Q L G+ ++K+ F GH + G + + + V+ VL GA
Sbjct: 95 QLSQAPRQGLLYGVPVSLKECFSYKGHDSTLG---LSLNEGMPSESDCVVVQVLKLQGAV 151
Query: 77 SIGKTIMDEMAYSINGENKHYGTPTNPCAPDRVPXXXXXXXXXXXXXKLVDFSLGTDTGG 136
T + + S + N +G NP + P LGTD GG
Sbjct: 152 PFVHTNVPQSMLSFDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGG 211
Query: 137 SVRVPASYCGIFGFRPSHSAVSTAGV 162
S+R P+++CGI G +P+ + +S +G+
Sbjct: 212 SIRFPSAFCGICGLKPTGNRLSKSGL 237
>pdb|1MT5|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|C Chain C, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|D Chain D, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|E Chain E, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|F Chain F, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|G Chain G, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|H Chain H, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|I Chain I, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|J Chain J, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|K Chain K, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|L Chain L, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|M Chain M, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|N Chain N, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|O Chain O, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|P Chain P, Crystal Structure Of Fatty Acid Amide Hydrolase
Length = 537
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 63/146 (43%), Gaps = 4/146 (2%)
Query: 18 QPSSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLS-GGAT 76
Q S + Q L G+ ++K+ F GH + G + + + V+ VL GA
Sbjct: 88 QLSQAPRQGLLYGVPVSLKECFSYKGHDSTLG---LSLNEGMPSESDCVVVQVLKLQGAV 144
Query: 77 SIGKTIMDEMAYSINGENKHYGTPTNPCAPDRVPXXXXXXXXXXXXXKLVDFSLGTDTGG 136
T + + S + N +G NP + P LGTD GG
Sbjct: 145 PFVHTNVPQSMLSFDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGG 204
Query: 137 SVRVPASYCGIFGFRPSHSAVSTAGV 162
S+R P+++CGI G +P+ + +S +G+
Sbjct: 205 SIRFPSAFCGICGLKPTGNRLSKSGL 230
>pdb|4DO3|A Chain A, Structure Of Faah With A Non-steroidal Anti-inflammatory
Drug
pdb|4DO3|B Chain B, Structure Of Faah With A Non-steroidal Anti-inflammatory
Drug
Length = 571
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 63/146 (43%), Gaps = 4/146 (2%)
Query: 18 QPSSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLS-GGAT 76
Q S + Q L G+ ++K+ F GH + G + + + V+ VL GA
Sbjct: 114 QLSQAPRQGLLYGVPVSLKECFSYKGHDSTLG---LSLNEGMPSESDCVVVQVLKLQGAV 170
Query: 77 SIGKTIMDEMAYSINGENKHYGTPTNPCAPDRVPXXXXXXXXXXXXXKLVDFSLGTDTGG 136
T + + S + N +G NP + P LGTD GG
Sbjct: 171 PFVHTNVPQSMLSFDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGG 230
Query: 137 SVRVPASYCGIFGFRPSHSAVSTAGV 162
S+R P+++CGI G +P+ + +S +G+
Sbjct: 231 SIRFPSAFCGICGLKPTGNRLSKSGL 256
>pdb|3QK5|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QK5|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QJ8|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|3QJ8|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|3QJ9|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QJ9|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QKV|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Compound
pdb|3QKV|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Compound
Length = 587
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 63/146 (43%), Gaps = 4/146 (2%)
Query: 18 QPSSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLS-GGAT 76
Q S + Q L G+ ++K+ F GH + G + + + V+ VL GA
Sbjct: 132 QLSQAPRQGLLYGVPVSLKECFSYKGHDSTLG---LSLNEGMPSESDCVVVQVLKLQGAV 188
Query: 77 SIGKTIMDEMAYSINGENKHYGTPTNPCAPDRVPXXXXXXXXXXXXXKLVDFSLGTDTGG 136
T + + S + N +G NP + P LGTD GG
Sbjct: 189 PFVHTNVPQSMLSFDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGG 248
Query: 137 SVRVPASYCGIFGFRPSHSAVSTAGV 162
S+R P+++CGI G +P+ + +S +G+
Sbjct: 249 SIRFPSAFCGICGLKPTGNRLSKSGL 274
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 33/65 (50%)
Query: 367 FRARAFSLLSIAGVSGFCQVSIPLGLHDNLPVAISLLAKHGSDGFLLNLVETLHNTLKEE 426
F + + L+++ ++G C ++ +NLP+ +A S+ LL +E ++KE
Sbjct: 386 FDKTSATWLALSRIAGLCNRAVFQANQENLPILKRAVAGDASESALLKCIELCCGSVKEM 445
Query: 427 LQRMS 431
+R +
Sbjct: 446 RERYT 450
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 33/65 (50%)
Query: 367 FRARAFSLLSIAGVSGFCQVSIPLGLHDNLPVAISLLAKHGSDGFLLNLVETLHNTLKEE 426
F + + L+++ ++G C ++ +NLP+ +A S+ LL +E ++KE
Sbjct: 380 FDKTSATWLALSRIAGLCNRAVFQANQENLPILKRAVAGDASESALLKCIELCCGSVKEM 439
Query: 427 LQRMS 431
+R +
Sbjct: 440 RERYT 444
>pdb|3GNM|H Chain H, The Crystal Structure Of The Jaa-f11 Monoclonal Antibody
Fab Fragment
Length = 223
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 10/90 (11%)
Query: 3 SRDSDYGAFMEKF------VLQPSSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWAR- 55
S ++DY + +KF SS+ + LS LT ++ G+ W +
Sbjct: 52 SPNTDYTEYNQKFRDKATLTADKSSTTAYMQLSSLTSEDSAVYYCARSFIGYNFDFWGQG 111
Query: 56 ---THSAATSTAPAVLAVLSGGATSIGKTI 82
T S+AT+TAP+V ++ G + + G ++
Sbjct: 112 TTLTVSSATTTAPSVYPLVPGCSDTSGSSV 141
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,511,125
Number of Sequences: 62578
Number of extensions: 487536
Number of successful extensions: 1422
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1348
Number of HSP's gapped (non-prelim): 56
length of query: 431
length of database: 14,973,337
effective HSP length: 102
effective length of query: 329
effective length of database: 8,590,381
effective search space: 2826235349
effective search space used: 2826235349
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)