Query 044294
Match_columns 431
No_of_seqs 272 out of 1264
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 23:16:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044294.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044294hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dc0_A Probable amidase; struc 100.0 2.2E-95 8E-100 712.1 29.4 386 1-423 28-433 (434)
2 3ip4_A Glutamyl-tRNA(Gln) amid 100.0 8.3E-94 2.8E-98 711.2 30.7 389 1-424 33-477 (485)
3 1o9p_A Malonamidase E2; malona 100.0 4.9E-93 1.7E-97 690.7 32.3 380 1-425 29-412 (414)
4 3kfu_E Glutamyl-tRNA(Gln) amid 100.0 3.7E-93 1.3E-97 701.0 28.8 391 1-426 28-461 (471)
5 3h0l_A Glutamyl-tRNA(Gln) amid 100.0 1.3E-92 4.5E-97 699.1 31.0 392 1-425 32-471 (478)
6 2gi3_A Glutamyl-tRNA(Gln) amid 100.0 1E-92 3.5E-97 702.5 29.7 387 1-424 34-462 (476)
7 3a1k_A Amidase; AS family enzy 100.0 8.3E-92 2.8E-96 699.6 32.4 394 5-423 68-501 (521)
8 3a2q_A 6-aminohexanoate-cyclic 100.0 6.4E-92 2.2E-96 699.8 29.3 394 1-424 35-475 (493)
9 1m22_A Peptide amidase, PAM; e 100.0 3.4E-91 1.2E-95 695.5 25.6 391 2-425 39-486 (503)
10 3ppm_A Fatty-acid amide hydrol 100.0 2.2E-86 7.6E-91 662.5 27.1 407 2-426 99-569 (573)
11 3u85_B Histone-lysine N-methyl 30.0 13 0.00044 18.2 0.2 8 109-116 8-15 (21)
12 1pd7_B MAD1; PAH2, SIN3, eukar 21.3 77 0.0026 16.7 2.2 16 409-424 5-20 (26)
13 1wz4_A Major surface antigen; 20.0 28 0.00096 18.5 0.4 8 108-115 19-26 (26)
No 1
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus}
Probab=100.00 E-value=2.2e-95 Score=712.06 Aligned_cols=386 Identities=27% Similarity=0.358 Sum_probs=325.9
Q ss_pred CCCCCCCcCeeeeccccC-----------CCCCCCCCCCccceEEEeeccccCCccCCCCchhhhhcCCCCCCChHHHHH
Q 044294 1 MASRDSDYGAFMEKFVLQ-----------PSSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLA 69 (431)
Q Consensus 1 ~~~~~~~~~a~~~~~~~~-----------~~~~~~~~pL~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~r 69 (431)
|+++|+ +|||++..+++ .++++..||||||||+|||||+++|++||+||+.| + .++.+||++|+|
T Consensus 28 i~~~~~-lna~~~~~~~~Al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~G~~tt~Gs~~~--~-~~a~~dA~vV~r 103 (434)
T 2dc0_A 28 AKAFQD-RNALAYLDEEAARKEALALTEELRRGQVRGPLHGLPLTVKDLFPVKGMPTRAGTKAP--L-PPLPEEARAVRR 103 (434)
T ss_dssp HHHTGG-GCCEEEECHHHHHHHHHHHHHHHHTTCCCSTTTTCEEEEETTSCBTTBCCCTTCSSC--C-CCCCSSCHHHHH
T ss_pred HHHhCC-CcEEEEcCHHHHHHHHHHHHHHHhcCCCCCCcCCeeEEEEeccccCCcccCCCCccc--C-CCCCCCHHHHHH
Confidence 456799 99999876432 13466789999999999999999999999999998 2 233899999999
Q ss_pred HHhCCCeEEeecCcCcccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHhcCCCceeeeccCCCccccccccccccc
Q 044294 70 VLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPCAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYCGIFG 149 (431)
Q Consensus 70 L~~aGaii~gkt~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSS~Gsaaavaag~~~~a~GtD~gGSiR~PAa~~Gv~G 149 (431)
||+|||||+||||||||+++.+++|++||+|+||||+.|+|||||||||||||+|++|+|+|||||||||+||+||||||
T Consensus 104 L~~aGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAaaVAag~~~~alGtDtgGSIRiPAa~cGv~G 183 (434)
T 2dc0_A 104 LREAGALLFAKTNMHEIALGITGENPWTGPVRNAVDPSRQAGGSSGGSAVAVALGIGLASLGTDTGGSIRIPAGFNGVVG 183 (434)
T ss_dssp HHHTTCEEEEEECCSGGGCCSSCCCTTTCCCBCSSCTTBBCCSSSHHHHHHHHHTSSSCEEEECSSSTTHHHHHHHTCEE
T ss_pred HHHCCCEEEEEeChhHHhcCCCCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHcCCCceeeecCCChhhhhhHHhCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCccCCCCCCCCCCCCccccccCCHHHHHHHHHHHhcCCCCCCC--CCCceEEEecchhhccCCCchHHHHHHHH
Q 044294 150 FRPSHSAVSTAGVIPMAQSFDTVGWFAWDPKILNRVGRVLLQLADDVNL--VRPSQVIFAEDCLQLSSIPSDRVTQGLVK 227 (431)
Q Consensus 150 lkPt~G~v~~~G~~p~~~s~d~~Gp~arsv~d~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 227 (431)
||||+||||+.|++|+++++|++|||+||++|++.+++++.+. ..|+ .++.||++..+.+. ...++++.+.+++
T Consensus 184 lKPT~G~vs~~g~~~~~~s~d~~Gp~arsv~D~a~~l~~l~g~--~~d~~~~~~lrig~~~~~~~--~~~~~~v~~a~~~ 259 (434)
T 2dc0_A 184 FKPSYGRVSLEGALPLSRSTDHAGPLTRSVRDAHFLTEILAGE--SIPLEGVQNPVFGVPLDFLE--GRLGVEVRKAFTR 259 (434)
T ss_dssp EECSTTSSCCTTSCCSCTTTCCEEEEESSHHHHHHHHHHHHTS--CCCCCCCCSCEEEECHHHHT--TCSCHHHHHHHHH
T ss_pred EECCCCCCCCCCCCCCCCccCeeCcccCCHHHHHHHHHHHhCC--CCCcccccCCEEEEECcccc--CCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999998764 2332 34568888766432 3357889999999
Q ss_pred HHHHHh--CCcceeeeeccccccccccchHHHhhhcccccccccchHHHHHHHHHHHHHHHHHhhhhhhhhhhCCCCCHH
Q 044294 228 SVEKLF--GGHIIENVILGDYVKDKVPSLQHFLSEGNKEQEYSIPSLAALSSAMRLLQRYEFKNNHGDWVTTVKPDLGPG 305 (431)
Q Consensus 228 a~~~l~--g~~~~~~~~l~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~ 305 (431)
+++.|. |+++++ . .+| ++.. ...+..+...|.+..+.+++......+++.
T Consensus 260 a~~~L~~~G~~v~~-~--------~~p-~~~~------------------~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 311 (434)
T 2dc0_A 260 LLEDLPALRAEVRE-V--------SLP-LEGV------------------YEVYTRLVRYEAARIHEKALKEHPEGFSPQ 311 (434)
T ss_dssp HHHHTTTTTCEEEE-C--------CCC-CTTH------------------HHHHHHHHHHHHHHHSHHHHHHCGGGSCHH
T ss_pred HHHHHHHCCCEEEE-e--------CCC-cHHH------------------HHHHHHHHHHHHHHHHHHHHHhchhhcCHH
Confidence 998886 655522 1 122 2111 112223444566556666666666678999
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCCCcc-----hHHHHHHhhhhhhccccc
Q 044294 306 ISERVWEAVRTSAQKIDVCQSVKTELRAALSALLGDHGILVIPTVPGPPPKLQMDPS-----ALEVFRARAFSLLSIAGV 380 (431)
Q Consensus 306 ~~~~l~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~~~~~~~-----~~~~~~~~~~~~t~~~nl 380 (431)
++.++..+..++..+|.++++.|+++++++.++|+++|+||+||++.+||+++.... ....+ ..+..||.++|+
T Consensus 312 ~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~t~~~nl 390 (434)
T 2dc0_A 312 VREALLAGLALTEKDYRDAVAEREALRLELVKALRGVDALLLPVQPLPAPPLGTEEVELESGRKGHR-EAFITLTLPFSL 390 (434)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEESCSSSCCBTTCCEEEETTEEEEHH-HHHHTTTHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEECCCCCCCccCcccccccccchhhhh-hhhhhhhhhhhh
Confidence 999999999999999999999999999999999999999999999999999886521 01111 233568999999
Q ss_pred CCCceeeeeCcCCCCCceEEEEecCCCChHHHHHHHHHHHHHH
Q 044294 381 SGFCQVSIPLGLHDNLPVAISLLAKHGSDGFLLNLVETLHNTL 423 (431)
Q Consensus 381 ~G~PaisvP~G~~~GlPvGlqivg~~~~D~~LL~~A~~lE~~~ 423 (431)
+|+|++|||+|+.+|||+||||+|++|+|..||++|++||+.+
T Consensus 391 ~G~PaisvP~g~~~GlPvGvqlvg~~~~d~~lL~~A~~lE~~~ 433 (434)
T 2dc0_A 391 LGVPTLALPFAKVEGMPVGLQVVGAYGEDGKVLALGGWLEARL 433 (434)
T ss_dssp TTCCEEEEEEEEETTEEEEEEEECCTTCHHHHHHHHHHHHTTC
T ss_pred hCCCeEEEecCCCCCCCeEEEEECCCCchHHHHHHHHHHHHhh
Confidence 9999999999988899999999999999999999999999764
No 2
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: c.117.1.1 PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A
Probab=100.00 E-value=8.3e-94 Score=711.24 Aligned_cols=389 Identities=23% Similarity=0.320 Sum_probs=315.0
Q ss_pred CCCCCCCcCeeeeccccC-----------C-CCCCCCCCCccceEEEeeccccCCccCCCCchhhhhcCCCCCCChHHHH
Q 044294 1 MASRDSDYGAFMEKFVLQ-----------P-SSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVL 68 (431)
Q Consensus 1 ~~~~~~~~~a~~~~~~~~-----------~-~~~~~~~pL~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~ 68 (431)
|+++|+.+|||++.++++ . +.++. ||||||||+|||||+++|++||+||+.++++ ++++||++|+
T Consensus 33 i~~~~~~lna~~~~~~~~Al~~A~~~d~~~~~~g~~-gpL~GvPi~vKD~~~v~G~~tt~Gs~~~~~~--~~~~dA~vV~ 109 (485)
T 3ip4_A 33 IEETDPTIKSFLALDKENAIKKAQELDELQAKDQMD-GKLFGIPMGIKDNIITNGLETTCASKMLEGF--VPIYESTVME 109 (485)
T ss_dssp HHHHHHHHCCEEEECHHHHHHHHHHHHHHHHTTCCC-STTTTCEEEEETTBCBTTBCCCTTSGGGTTC--CCSSCCHHHH
T ss_pred HHHhCCCceEEEEECHHHHHHHHHHHHHHHHhcCCC-CCcCCCEEEEEcCcccCCCccCCCChhhcCC--CCCCCcHHHH
Confidence 456789999999877542 1 45666 9999999999999999999999999999864 7889999999
Q ss_pred HHHhCCCeEEeecCcCcccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHhcCCCceeeeccCCCcccccccccccc
Q 044294 69 AVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPCAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYCGIF 148 (431)
Q Consensus 69 rL~~aGaii~gkt~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSS~Gsaaavaag~~~~a~GtD~gGSiR~PAa~~Gv~ 148 (431)
|||+|||||+||||||||+++.+++|++||+|+||||++|+|||||||||||||+|++|+|+|||||||||+||+|||||
T Consensus 110 rLr~AGAii~GKTn~~Efa~~~~t~n~~~G~t~NP~~~~~~pGGSSgGsAaaVAag~~~~alGtDtgGSIRiPAa~cGv~ 189 (485)
T 3ip4_A 110 KLHKENAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPLSLGSDTGGSIRQPAAYCGVV 189 (485)
T ss_dssp HHHHTTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHHHHHHHTTSCSEEEEECSSSTTHHHHHHTTCE
T ss_pred HHHHCCCEEEEecCCcccccCCCCCCCCCCCcCCccccCcCCCCCccHHHHHhhcCCCceeeeccCCcchhhhHHHhCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCccCCCCCCCCCCCCccccccCCHHHHHHHHHHHhcCCCCCC-----------------CCCCceEEEecchh
Q 044294 149 GFRPSHSAVSTAGVIPMAQSFDTVGWFAWDPKILNRVGRVLLQLADDVN-----------------LVRPSQVIFAEDCL 211 (431)
Q Consensus 149 GlkPt~G~v~~~G~~p~~~s~d~~Gp~arsv~d~~~~~~~~~~~~~~~~-----------------~~~~~~i~~~~~~~ 211 (431)
|||||+||||+.|++|+++++|++|||+||++|++.+++++.+.+ ..| ..++.||++..+++
T Consensus 190 GlKPT~Grvs~~G~~p~~~sld~~Gp~aRsv~D~a~~l~vl~g~d-~~d~~~~~~~~~~~~~~~~~~~~~lrigv~~~~~ 268 (485)
T 3ip4_A 190 GMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGAD-VNDSTSAPVDDVDFTSEIGKDIKGLKVALPKEYL 268 (485)
T ss_dssp EEECCTTSBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHHHBSCC-TTCTTSCCCCCCCCSTTTTCCCTTCEEEEEGGGG
T ss_pred eecCCCCcccCCCCCCcccccceeccccCCHHHHHHHHHHhcCCC-cccccccccCccchhhhhccCccCcEEEEECCcc
Confidence 999999999999999999999999999999999999999987533 222 12456788877654
Q ss_pred hccCCCchHHHHHHHHHHHHHh--CCcceeeeeccccccccccchHHHhhhcccccccccchHHHHHHHHHHHHHHHHHh
Q 044294 212 QLSSIPSDRVTQGLVKSVEKLF--GGHIIENVILGDYVKDKVPSLQHFLSEGNKEQEYSIPSLAALSSAMRLLQRYEFKN 289 (431)
Q Consensus 212 ~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~l~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~ 289 (431)
. ...++++.+.++++++.|. |+++++ .+ +|.++.. ...+..+...|+..
T Consensus 269 ~--~~~~~~v~~a~~~a~~~L~~~G~~v~~-~~--------~p~~~~~------------------~~~~~~~~~~e~~~ 319 (485)
T 3ip4_A 269 G--EGVADDVKEAVQNAVETLKSLGAVVEE-VS--------LPNTKFG------------------IPSYYVIASSEASS 319 (485)
T ss_dssp S--TTSCHHHHHHHHHHHHHHHHTTCEEEE-EC--------CTTGGGH------------------HHHHHHHHHHHHHH
T ss_pred c--CCCCHHHHHHHHHHHHHHHHCCCEEEE-eC--------CCcHHHH------------------HHHHHHHHHHHHHH
Confidence 2 2357889999999998886 776532 22 2222111 01111222223222
Q ss_pred hhh-------------------hhhhhhCCCCCHHHHHHHHHhhc-----CCHHHHHHHHHHHHHHHHHHHHHhCCCCEE
Q 044294 290 NHG-------------------DWVTTVKPDLGPGISERVWEAVR-----TSAQKIDVCQSVKTELRAALSALLGDHGIL 345 (431)
Q Consensus 290 ~~~-------------------~~~~~~~~~~~~~~~~~l~~g~~-----~s~~~~~~a~~~r~~~~~~~~~~~~~~DvL 345 (431)
++. .+.......+++.++.++..+.. ....+|.++++.|+.+++++.++|+++|+|
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~l 399 (485)
T 3ip4_A 320 NLSRFDGIRYGYHSKEAHSLEELYKMSRSEGFGKEVKRRIFLGTFALSSGYYDAYYKKSQKVRTLIKNDFDKVFENYDVV 399 (485)
T ss_dssp HTTTCSSSSSSCCCTTCCSHHHHHHHHHHHHSCHHHHHHHHHHHHHHSTTTTTTTHHHHHHHHHHHHHHHHHHHTTCSEE
T ss_pred HHHhhhhhhccccccccccHHHHHHhhhhhhcCHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCCEE
Confidence 111 11112223477888887766542 223458899999999999999999999999
Q ss_pred EEcCCCCCCCCCCCCcchH-HHHHHhhhhhhcccccCCCceeeeeCcCCCCCceEEEEecCCCChHHHHHHHHHHHHHHH
Q 044294 346 VIPTVPGPPPKLQMDPSAL-EVFRARAFSLLSIAGVSGFCQVSIPLGLHDNLPVAISLLAKHGSDGFLLNLVETLHNTLK 424 (431)
Q Consensus 346 l~Pt~~~~ap~~~~~~~~~-~~~~~~~~~~t~~~nl~G~PaisvP~G~~~GlPvGlqivg~~~~D~~LL~~A~~lE~~~~ 424 (431)
|+||++.+||+++...... ..+. ...||.++|++|+|++|||+|+++|||+||||+|++|+|.+||++|++||+.++
T Consensus 400 l~Pt~~~~a~~~~~~~~~~~~~~~--~~~~t~~~nl~G~PaisvP~g~~~GlPvGlqlvg~~~~d~~lL~~A~~lE~~~~ 477 (485)
T 3ip4_A 400 VGPTAPTTAFNLGEEIDDPLTMYA--NDLLTTPVNLAGLPGISVPCGQSNGRPIGLQFIGKPFDEKTLYRVAYQYETQYN 477 (485)
T ss_dssp EEESSSSSCCBTTTSTTCHHHHHG--GGTTTHHHHHHTCCEEEEEEEEETTEEEEEEEECSTTCHHHHHHHHHHHHHHSC
T ss_pred EeCCCCCCCCCcccccCChHHHhh--hhhhhhhhHhhCCCeEEEeCCcCCCCCEeEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 9999999999998653222 2221 224799999999999999999989999999999999999999999999999875
No 3
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A
Probab=100.00 E-value=4.9e-93 Score=690.65 Aligned_cols=380 Identities=24% Similarity=0.351 Sum_probs=321.1
Q ss_pred CCCCCCCcCeeeeccccCCCCCCCCCCCccceEEEeeccccCCccCCCCchhhhhcCCCCCCChHHHHHHHhCCCeEEee
Q 044294 1 MASRDSDYGAFMEKFVLQPSSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGK 80 (431)
Q Consensus 1 ~~~~~~~~~a~~~~~~~~~~~~~~~~pL~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~rL~~aGaii~gk 80 (431)
|++.|+.+|||++..+++. + ...+|||||||+|||||+++|++||+||..|.+. ++.+||++|+|||+|||||+||
T Consensus 29 i~~~~~~lna~~~~~~~~a-~-~~~gpL~GvPi~vKD~~~v~G~~tt~Gs~~~~~~--~~~~dA~~V~rL~~aGAii~GK 104 (414)
T 1o9p_A 29 IEAREKEVHAFVRHDKSAR-A-QASGPLRGIAVGIKDIIDTANMPTEMGSEIYRGW--QPRSDAPVVMMLKRAGATIIGK 104 (414)
T ss_dssp HHHHHHHHCCEEEECTTCC-C-CSSSTTTTCEEEEETTBCCSSSCCCTTSGGGTTC--CCSSCCHHHHHHHHTTCEEEEE
T ss_pred HHHhCccccEEEEeCHHHh-c-ccCCCcCCCEEEEEcccccCCcccCcCCHhhccC--CCCCCHHHHHHHHHCCCEEEEe
Confidence 3566899999999876643 3 5679999999999999999999999999999864 7889999999999999999999
Q ss_pred cCcCcccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHhcCCCceeeeccCCCcccccccccccccccCCCCCccCC
Q 044294 81 TIMDEMAYSINGENKHYGTPTNPCAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYCGIFGFRPSHSAVSTA 160 (431)
Q Consensus 81 t~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSS~Gsaaavaag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPt~G~v~~~ 160 (431)
||||||++ .|+ |+|+||||++|+|||||||||||||+|++|+|+|||||||||+||+||||||||||+||||+.
T Consensus 105 Tn~~Efa~----~n~--G~t~NP~~~~~~pGGSSgGsAaaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~ 178 (414)
T 1o9p_A 105 TTTTAFAS----RDP--TATLNPHNTGHSPGGASSGSAAAVGAGMIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTV 178 (414)
T ss_dssp ECCCGGGS----SCC--CSCCBTTBTTBCCCSSSHHHHHHHHTTSCSEEEEEESSSTTHHHHHHHTCEEEECSTTSSCCT
T ss_pred cCCchhhc----CCC--CCCCCCCCCCCCCCcchHHHHHHHHcCCCceEEeeCCchhhhHhHHHhCCeeEECCCCCCCCC
Confidence 99999998 454 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCccccccCCHHHHHHHHHHHhcCCCC--CCCCCCceEEEecchhhccCCCchHHHHHHHHHHHHHh--CCc
Q 044294 161 GVIPMAQSFDTVGWFAWDPKILNRVGRVLLQLADD--VNLVRPSQVIFAEDCLQLSSIPSDRVTQGLVKSVEKLF--GGH 236 (431)
Q Consensus 161 G~~p~~~s~d~~Gp~arsv~d~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~ 236 (431)
|++|+++++|++|||+||++|++.+++++.+.++. ....++.||++..+... ...++++.+.++++++.|. |++
T Consensus 179 G~~~~~~s~d~~Gp~arsv~D~a~~~~~l~g~~~~~~~~~~~~lrig~~~~~~~--~~~~~~v~~a~~~a~~~L~~~G~~ 256 (414)
T 1o9p_A 179 GVKCYSWALDTVGLFGARAEDLARGLLAMTGRSEFSGIVPAKAPRIGVVRQEFA--GAVEPAAEQGLQAAIKAAERAGAS 256 (414)
T ss_dssp TBCCSCTTTCEEEEEESSHHHHHHHHHHHHCCGGGSSCCCCSSCEEEECCCGGG--CCCCHHHHHHHHHHHHHHHHTTCE
T ss_pred CCCCCCCccCeeccccCCHHHHHHHHHHhcCCCccccccCCCCCEEEEECcccc--CCCCHHHHHHHHHHHHHHHHCCCE
Confidence 99999999999999999999999999998764311 11234567887765432 3357889999999988886 665
Q ss_pred ceeeeeccccccccccchHHHhhhcccccccccchHHHHHHHHHHHHHHHHHhhhhhhhhhhCCCCCHHHHHHHHHhhcC
Q 044294 237 IIENVILGDYVKDKVPSLQHFLSEGNKEQEYSIPSLAALSSAMRLLQRYEFKNNHGDWVTTVKPDLGPGISERVWEAVRT 316 (431)
Q Consensus 237 ~~~~~~l~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~ 316 (431)
+++ . .+|... +.+...+..+..+|.+..+..++......+++.++.++..+..+
T Consensus 257 v~~-~--------~~~~~~-----------------~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 310 (414)
T 1o9p_A 257 VQA-I--------DLPEAV-----------------HEAWRIHPIIQDFEAHRALAWEFSEHHDEIAPMLRASLDATVGL 310 (414)
T ss_dssp EEE-C--------CCCHHH-----------------HHHHHHHHHHHHHHHHHHTHHHHHHSGGGSCHHHHHHHHHTTTC
T ss_pred EEE-e--------cCcchH-----------------HHHHHHHHHHHHHHHHHHHHHHHHhChhhcCHHHHHHHHhccCC
Confidence 532 1 122110 11122233455566666677777666677999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCCCcchHHHHHHhhhhhhcccccCCCceeeeeCcCCCCC
Q 044294 317 SAQKIDVCQSVKTELRAALSALLGDHGILVIPTVPGPPPKLQMDPSALEVFRARAFSLLSIAGVSGFCQVSIPLGLHDNL 396 (431)
Q Consensus 317 s~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~G~~~Gl 396 (431)
+..+|.++++.|++++++++++|+++|+||+||++.+||+++.... ....||.++|++|+|++|||+|+..||
T Consensus 311 ~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~-------~~~~~t~~~nl~G~PaisvP~g~~~Gl 383 (414)
T 1o9p_A 311 TPKEYDEARRIGRRGRRELGEVFEGVDVLLTYSAPGTAPAKALAST-------GDPRYNRLWTLMGNPCVNVPVLKVGGL 383 (414)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTTCSEEEEESSSSSCCBGGGCCC-------CCGGGTHHHHHHCCCEEEEEEEEETTE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCCCCCcccccCC-------cccchhhhhHhcCCCeEEeeCCCCCCC
Confidence 9999999999999999999999999999999999999998753211 112579999999999999999976699
Q ss_pred ceEEEEecCCCChHHHHHHHHHHHHHHHH
Q 044294 397 PVAISLLAKHGSDGFLLNLVETLHNTLKE 425 (431)
Q Consensus 397 PvGlqivg~~~~D~~LL~~A~~lE~~~~~ 425 (431)
|+||||+|++|+|.+||++|++||+.+++
T Consensus 384 PvGvqlvg~~~~d~~lL~~a~~le~~~~g 412 (414)
T 1o9p_A 384 PIGVQVIARFGNDAHALATAWFLEDALAK 412 (414)
T ss_dssp EEEEEEEESTTCHHHHHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCChHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999875
No 4
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Probab=100.00 E-value=3.7e-93 Score=701.00 Aligned_cols=391 Identities=29% Similarity=0.406 Sum_probs=315.9
Q ss_pred CCCCCCCcCeeeeccccCC---CCCCCCCCCccceEEEeeccccCCccCCCCchhhhhcCCCCCCChHHHHHHHhCCCeE
Q 044294 1 MASRDSDYGAFMEKFVLQP---SSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATS 77 (431)
Q Consensus 1 ~~~~~~~~~a~~~~~~~~~---~~~~~~~pL~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~rL~~aGaii 77 (431)
|++.|+.+|||++.+++++ .+-+...|||||||+|||||+++|++||+||+.|.++ ++.+||++|+|||+|||||
T Consensus 28 i~~~~~~lna~~~~~~~al~~A~~~d~~~pL~GvPi~vKD~~~~~G~~tt~Gs~~~~~~--~~~~da~~V~rL~~aGaii 105 (471)
T 3kfu_E 28 VQELDPGLGAFLSLNERLLEEAEAVDPGLPLAGLVVAVKDNIATRGLRTTAGSRLLENF--VPPYEATAVARLKALGALV 105 (471)
T ss_dssp HHHHHHHHCCEEEECCTTTHHHHTSCCSCTTTTCEEEEETTBCCTTSCCCTTCSTTTTC--CCSSCCHHHHHHHTTTCEE
T ss_pred HHHhCCCccEEEEeCHHHHHHHHhcCccCCcCCCeEEEECCcccCCccccccCHhHcCC--CCCCChHHHHHHHHCCCEE
Confidence 4567899999999873321 1112234999999999999999999999999999864 7889999999999999999
Q ss_pred EeecCcCcccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHhcCCCceeeeccCCCcccccccccccccccCCCCCc
Q 044294 78 IGKTIMDEMAYSINGENKHYGTPTNPCAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYCGIFGFRPSHSAV 157 (431)
Q Consensus 78 ~gkt~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSS~Gsaaavaag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPt~G~v 157 (431)
+||||||||+++.+++|++||+|+||||++|+|||||||||||||+|++|+|+|||||||||+||+||||||||||+|||
T Consensus 106 ~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaaaVAag~~~~a~GtDtgGSiR~PAa~cGv~GlKPT~G~v 185 (471)
T 3kfu_E 106 LGKTNLDEFGMGSSTEHSAFFPTKNPFDPDRVPGGSSGGSAAALAADLAPLALGSDTGGSVRQPAAFCGVYGLKPTYGRV 185 (471)
T ss_dssp EEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHHHHHHHTTSCSEEEEEESSSTTHHHHHHTTCEEEECCTTSS
T ss_pred EeecCcCchhcCCCCCCCCCCCcCCCCccCcCCCCCcHHHHHHHHCCCCccccccCCCCccccChhhcCceeeeCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCccccccCCHHHHHHHHHHHhcCCCCCC----------------CCCCceEEEecchhhccCCCchHH
Q 044294 158 STAGVIPMAQSFDTVGWFAWDPKILNRVGRVLLQLADDVN----------------LVRPSQVIFAEDCLQLSSIPSDRV 221 (431)
Q Consensus 158 ~~~G~~p~~~s~d~~Gp~arsv~d~~~~~~~~~~~~~~~~----------------~~~~~~i~~~~~~~~~~~~~~~~~ 221 (431)
|+.|++|+++++|++|||+||++|++.+++++.+.+ ..| ..++.||++..+++ ...++++
T Consensus 186 ~~~g~~~~~~~~d~~Gp~arsv~D~a~~~~~l~g~d-~~d~~~~~~~~~~~~~~~~~~~~lrIgv~~~~~---~~~~p~v 261 (471)
T 3kfu_E 186 SRFGLIAYASSLDQIGPMARSVRDLALLMDAAAGPD-PLDATSLDLPPRFQEALEGPLPPLRLGVVREAL---AGNSPGV 261 (471)
T ss_dssp CCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHCSCC-TTCTTCCCCCCCTTCCSCCCCSSCEEEEEGGGT---TTCCHHH
T ss_pred cCCCCCCcccccCeecceeCCHHHHHHHHHHhcCCC-cccccccCCCcchhhhhccCCCCCEEEEECCcc---CCCCHHH
Confidence 999999999999999999999999999999987532 222 12356788877654 2357889
Q ss_pred HHHHHHHHHHHh--CCcceeeeeccccccccccchHHHhhhcccccccccchHHHHHHHHHHHHHHHHHhh---------
Q 044294 222 TQGLVKSVEKLF--GGHIIENVILGDYVKDKVPSLQHFLSEGNKEQEYSIPSLAALSSAMRLLQRYEFKNN--------- 290 (431)
Q Consensus 222 ~~~~~~a~~~l~--g~~~~~~~~l~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~--------- 290 (431)
.+.++++++.|. |+++++ .+ +|.++.. ...+..+...|+..+
T Consensus 262 ~~a~~~a~~~L~~~G~~v~~-v~--------~p~~~~~------------------~~~~~~~~~~e~~~~~~~~~~~~~ 314 (471)
T 3kfu_E 262 ERALEEALKVFRELGLSVRE-VS--------WPSLPQA------------------LAAYYILAPAEASSNLARYDGTLY 314 (471)
T ss_dssp HHHHHHHHHHHHTTTCEEEE-EC--------CTTGGGH------------------HHHHHHHHHHHHHHHGGGCSTTTT
T ss_pred HHHHHHHHHHHHHcCCeeee-ec--------CccHHHH------------------HHHHHHHHHHHHHHHHHHhhhhcc
Confidence 999999999886 666532 22 2222211 111122222333222
Q ss_pred --------hhhhhhhhCCCCCHHHHHHHHHhhcC-----CHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCC
Q 044294 291 --------HGDWVTTVKPDLGPGISERVWEAVRT-----SAQKIDVCQSVKTELRAALSALLGDHGILVIPTVPGPPPKL 357 (431)
Q Consensus 291 --------~~~~~~~~~~~~~~~~~~~l~~g~~~-----s~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~~ 357 (431)
+.+++......+++.++.++..+... +..+|.++++.|+.+++++.++|+++|+||+||++.+||++
T Consensus 315 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~a~~~ 394 (471)
T 3kfu_E 315 GRRAAGEEVEGMMEATRALFGLEVKRRVLVGTFVLSSGYYEAYYGRAQAFRRRLKAEAQALFREVDLLLLPTTPHPAFPF 394 (471)
T ss_dssp SCCCCCSSSHHHHHHHHTTSCHHHHHHHHHHHHHHSTTTTTTTHHHHHHHHHHHHHHHHHHTTTCSEEEEESCSSSCCBT
T ss_pred ccccchhhHHHHHHhhhhhcCHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCcCCCCCcc
Confidence 11222222233889998888766432 33589999999999999999999999999999999999999
Q ss_pred CCCcchHHHHHHhhhhhhcccccCCCceeeeeCcCCCCCceEEEEecCCCChHHHHHHHHHHHHHHHHh
Q 044294 358 QMDPSALEVFRARAFSLLSIAGVSGFCQVSIPLGLHDNLPVAISLLAKHGSDGFLLNLVETLHNTLKEE 426 (431)
Q Consensus 358 ~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~G~~~GlPvGlqivg~~~~D~~LL~~A~~lE~~~~~~ 426 (431)
+........+.. ..||.++|++|+|++|||+|+.+|||+||||+|++|+|.+||++|++||+.+++|
T Consensus 395 ~~~~~~~~~~~~--~~~t~~~nl~G~PaisvP~g~~~GlPvGlQlvg~~~~D~~LL~~A~~lE~~~g~w 461 (471)
T 3kfu_E 395 GARRDPLAMYRE--DLYTVGANLTGLPALSFPAGFEGHLPVGLQLLAPWGEDERLLRAALAFEEATARA 461 (471)
T ss_dssp TTTCSHHHHHGG--GTTTHHHHHHCCCEEEEEEEEETTEEEEEEEECSTTCHHHHHHHHHHHHHHSSCC
T ss_pred ccccchHHHHHH--hhhhhcchhhCCCeEEEeCCCCCCCCeEEEEECCCCCHHHHHHHHHHHHHHhcCc
Confidence 865332222322 2389999999999999999998899999999999999999999999999987444
No 5
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A*
Probab=100.00 E-value=1.3e-92 Score=699.10 Aligned_cols=392 Identities=25% Similarity=0.354 Sum_probs=315.5
Q ss_pred CCCCCCCcCeeeeccccC-----CCCCCCCCCCccceEEEeeccccCCccCCCCchhhhhcCCCCCCChHHHHHHHhCCC
Q 044294 1 MASRDSDYGAFMEKFVLQ-----PSSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGA 75 (431)
Q Consensus 1 ~~~~~~~~~a~~~~~~~~-----~~~~~~~~pL~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~rL~~aGa 75 (431)
|+++|+.+|||++.++++ .......||||||||+|||||+++|++||+||+.+.++ ++++||++|+||++|||
T Consensus 32 i~~~~~~lna~~~~~~~~Al~~A~~~d~~~gpL~GvPi~vKD~~~~~G~~tt~Gs~~~~~~--~~~~da~~V~rL~~aGa 109 (478)
T 3h0l_A 32 YNQTEEKVKAYITPLYGKALKQAESLKERELPLFGIPIAVKDNILVEGEKTTCASKILENF--VAPYDATVIERLKKAGA 109 (478)
T ss_dssp HHHHHHHHCCEEEECHHHHHHHHHTCCCTTSTTTTCEEEEETTBCCTTSBCCTTCGGGTTC--BCSSCCHHHHHHHHTTC
T ss_pred HHHhCCcCcEEEEeChHHHHHHHHhhchhcCCcCCceEEEEcCccCCCCCcCCcCHhhcCC--CCCCCHHHHHHHHHCCC
Confidence 456789999999877542 11122279999999999999999999999999998764 78899999999999999
Q ss_pred eEEeecCcCcccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHhcCCCceeeeccCCCcccccccccccccccCCCC
Q 044294 76 TSIGKTIMDEMAYSINGENKHYGTPTNPCAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYCGIFGFRPSHS 155 (431)
Q Consensus 76 ii~gkt~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSS~Gsaaavaag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPt~G 155 (431)
||+||||||||+++.+++|++||+|+||||++|+|||||||||||||+|++|+|+|||||||||+||+||||||||||+|
T Consensus 110 ii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaaaVAag~~~~a~GtDtgGSiR~PAa~cGv~GlKPT~G 189 (478)
T 3h0l_A 110 LIVGKTNLDEFAMGSSTEYSAFFPTKNPWDLERVPGGSSGGSAASVAVLSAPVSLGSDTGGSIRQPASFCGVIGIKPTYG 189 (478)
T ss_dssp EEEEEECCSGGGCCSSSTTCSSCCCCCTTCTTBCCCSSSHHHHHHHHHTSSSCEEEECSSSTTHHHHHHHTCEEEECCTT
T ss_pred EEEEEeCchhhhcCCCCCCCCCCCcCCCccCCCCCCcchHHHHHHHHCCCCceeeecCCCCcchhhhHHhCCeeEeCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCCCCCCCCCCccccccCCHHHHHHHHHHHhcCCCCCC-----------------CCCCceEEEecchhhccCCCc
Q 044294 156 AVSTAGVIPMAQSFDTVGWFAWDPKILNRVGRVLLQLADDVN-----------------LVRPSQVIFAEDCLQLSSIPS 218 (431)
Q Consensus 156 ~v~~~G~~p~~~s~d~~Gp~arsv~d~~~~~~~~~~~~~~~~-----------------~~~~~~i~~~~~~~~~~~~~~ 218 (431)
|||+.|++|+++++|++|||+||++|++.+++++.+.+ ..| ..++.||++..+++. ...+
T Consensus 190 ~v~~~g~~~~~~~~d~~Gp~arsv~D~a~~l~vl~g~d-~~d~~~~~~p~~~~~~~~~~~~~~lrIgv~~~~~~--~~~~ 266 (478)
T 3h0l_A 190 RVSRYGLVAFASSLDQIGVFGRRTEDVALVLEVISGWD-EKDSTSAKVPVPEWSEEVKKEVKGLKIGLPKEFFE--YELQ 266 (478)
T ss_dssp SBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHHHBSCC-TTCTTSCCCCCCCHHHHTTCCCTTCEEEEEGGGGG--SCCC
T ss_pred cccCCCCCCCccCCCeecceeCCHHHHHHHHHHhcCCC-cccccccccCccchhhhhccCCCCCEEEEECCccc--CCCC
Confidence 99999999999999999999999999999999987543 222 124567888776542 2357
Q ss_pred hHHHHHHHHHHHHHh--CCcceeeeeccccccccccchHHHhhhcccccccccchHHHHHHHHHHHHHHHHHhhhhh---
Q 044294 219 DRVTQGLVKSVEKLF--GGHIIENVILGDYVKDKVPSLQHFLSEGNKEQEYSIPSLAALSSAMRLLQRYEFKNNHGD--- 293 (431)
Q Consensus 219 ~~~~~~~~~a~~~l~--g~~~~~~~~l~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~--- 293 (431)
+++.+.++++++.|. |+++++ .+ +|.++.. ...+..+...|+..++..
T Consensus 267 p~v~~a~~~a~~~L~~~G~~v~~-v~--------~p~~~~~------------------~~~~~~~~~~e~~~~~~~~~~ 319 (478)
T 3h0l_A 267 PQVKEAFENFIKELEKEGFEIKE-VS--------LPHVKYS------------------IPTYYIIAPSEASSNLARYDG 319 (478)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEE-EC--------CTTGGGH------------------HHHHHHHHHHHHHHHTTTCSS
T ss_pred HHHHHHHHHHHHHHHHCCCEEEE-eC--------CCcHHHH------------------HHHHHHHHHHHHHHHHHHhhh
Confidence 889999999998886 776532 22 2222111 111122222333222111
Q ss_pred ----------------hhhhhCCCCCHHHHHHHHHhhc-----CCHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEcCCCC
Q 044294 294 ----------------WVTTVKPDLGPGISERVWEAVR-----TSAQKIDVCQSVKTELRAALSALLGDHGILVIPTVPG 352 (431)
Q Consensus 294 ----------------~~~~~~~~~~~~~~~~l~~g~~-----~s~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~ 352 (431)
+.......+++.++.++..+.. ....+|.++++.|+.+++++.++|+++|+||+||++.
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~ 399 (478)
T 3h0l_A 320 VRYGYRAKEYKDIFEMYARTRDEGFGPEVKRRIMLGTFALSAGYYDAYYLKAQKVRRLITNDFLKAFEEVDVIASPTTPT 399 (478)
T ss_dssp SSSSCCCSCCSSHHHHHHHHHHHHSCHHHHHHHHHHHHHTSTTTTTTTHHHHHHHHHHHHHHHHHHTTTCSEEEEESCSS
T ss_pred hhhcccccccccHHHHHHHhhhhhcCHHHHHHHHhhchhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCCEEEcCCCCC
Confidence 1111223477888888776642 2234688999999999999999999999999999999
Q ss_pred CCCCCCCCcchHHHHHHhhhhhhcccccCCCceeeeeCcCCCCCceEEEEecCCCChHHHHHHHHHHHHHHHH
Q 044294 353 PPPKLQMDPSALEVFRARAFSLLSIAGVSGFCQVSIPLGLHDNLPVAISLLAKHGSDGFLLNLVETLHNTLKE 425 (431)
Q Consensus 353 ~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~G~~~GlPvGlqivg~~~~D~~LL~~A~~lE~~~~~ 425 (431)
+||+++.......... ....||.++|++|+|++|||+|+.+|||+||||+|++|+|.+||++|++||+.++-
T Consensus 400 ~a~~~~~~~~~~~~~~-~~~~~t~~~nl~G~PaisvP~g~~~GlPvGlQlvg~~~~D~~LL~~A~~lE~~~~~ 471 (478)
T 3h0l_A 400 LPFKFGERLENPIEMY-LSDILTVPANLAGLPAISIPIAWKDGLPVGGQLIGKHWDETTLLQISYLWEQKFKH 471 (478)
T ss_dssp SCCBTTTTSSSHHHHH-GGGTTTHHHHHHTCCEEEEEEEEETTEEEEEEEEECTTCHHHHHHHHHHHHHHSCG
T ss_pred CCCCcccccCChHhhh-hhhhhhhhhHhhCCCeEEEeCCCCCCCCeEEEEECCCCCHHHHHHHHHHHHHhcCc
Confidence 9999986532222111 12247999999999999999999899999999999999999999999999998754
No 6
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A*
Probab=100.00 E-value=1e-92 Score=702.53 Aligned_cols=387 Identities=23% Similarity=0.332 Sum_probs=312.5
Q ss_pred CCCCCCCcCeeeeccccC-CCCCCCCCCCccceEEEeeccccCCccCCCCchhhhhcCCCCCCChHHHHHHHhCCCeEEe
Q 044294 1 MASRDSDYGAFMEKFVLQ-PSSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIG 79 (431)
Q Consensus 1 ~~~~~~~~~a~~~~~~~~-~~~~~~~~pL~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~rL~~aGaii~g 79 (431)
|+++|+.+|||++..+++ +.+ . +|||||||+|||||+++|++||+||+.|+++ ++.+||++|+|||+|||||+|
T Consensus 34 i~~~~~~lna~~~~~~~~ald~--~-gpL~GvPi~vKD~~~v~G~~Tt~Gs~~~~~~--~~~~dA~vV~rLr~AGAii~G 108 (476)
T 2gi3_A 34 IKRLDPHVKAFISVRENVSVEK--K-GKFWGIPVAIKDNILTLGMRTTCASRILENY--ESVFDATVVKKMKEAGFVVVG 108 (476)
T ss_dssp HHHHHHHHCCEEEECCCCCCCC--C-STTTTCEEEEETTBCCSSSCCCTTCGGGTTC--CCCSCCHHHHHHHHHTCEEEE
T ss_pred HHHhCCceeEEEecChhhhhhc--c-CCcCCceEEEEcCccCCCCccCccChhhcCC--CCCCChHHHHHHHHCCCEEEE
Confidence 456789999999987653 222 2 9999999999999999999999999999764 788999999999999999999
Q ss_pred ecCcCcccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHhcCCCceeeeccCCCcccccccccccccccCCCCCccC
Q 044294 80 KTIMDEMAYSINGENKHYGTPTNPCAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYCGIFGFRPSHSAVST 159 (431)
Q Consensus 80 kt~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSS~Gsaaavaag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPt~G~v~~ 159 (431)
|||||||+++.+++|++||+|+||||+.|+|||||||||||||+|++|+|+|||||||||+||+||||||||||+||||+
T Consensus 109 KTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAaAVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~ 188 (476)
T 2gi3_A 109 KANLDEFAMGSSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGMVVAALGSDTGGSVRQPASLCGVVGYKPTYGLVSR 188 (476)
T ss_dssp EECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHHTSEEEECCTTSBCC
T ss_pred ecCchhhhcCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHcCCCceEeecCCCchhhhhHHHcCCeEEeCCCCcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCccccccCCHHHHHHHHHHHhcCCCCCC----------------CCCCceEEEecchhhccCCCchHHHH
Q 044294 160 AGVIPMAQSFDTVGWFAWDPKILNRVGRVLLQLADDVN----------------LVRPSQVIFAEDCLQLSSIPSDRVTQ 223 (431)
Q Consensus 160 ~G~~p~~~s~d~~Gp~arsv~d~~~~~~~~~~~~~~~~----------------~~~~~~i~~~~~~~~~~~~~~~~~~~ 223 (431)
.|++|+++++|++||||||++|++.+++++.+.+ ..| ..+..||++..+++. ...++++.+
T Consensus 189 ~G~~p~~~sld~~Gp~arsv~D~a~~l~~l~g~d-~~d~~~~~~p~~~~~~~~~~~~~lrig~~~~~~~--~~~~~~v~~ 265 (476)
T 2gi3_A 189 YGLVAFASSLDQIGPITKTVRDAAILMEIISGRD-ENDATTVNRKVDFLSEIEEGVSGMKFAVPEEIYE--HDIEEGVSE 265 (476)
T ss_dssp TTBCCSCTTTCEEEEEESSHHHHHHHHHHHBSCB-TTBTTCCSCCCCSSTTTTSCCTTCEEEEEGGGGG--SCCCHHHHH
T ss_pred CCCCCcccCCCeeeeeeCCHHHHHHHHHHhhCCC-CCCccccCCCcchhhhhhcCCCCCEEEEECcccc--CCCCHHHHH
Confidence 9999999999999999999999999999987532 222 123467888776542 235788999
Q ss_pred HHHHHHHHHh--CCcceeeeeccccccccccchHHHhhhcccccccccchHHHHHHHHHHHHHHHHHhh-----------
Q 044294 224 GLVKSVEKLF--GGHIIENVILGDYVKDKVPSLQHFLSEGNKEQEYSIPSLAALSSAMRLLQRYEFKNN----------- 290 (431)
Q Consensus 224 ~~~~a~~~l~--g~~~~~~~~l~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~----------- 290 (431)
.++++++.|. |+++++ .++ |.+.... ..+..+...|....
T Consensus 266 a~~~a~~~L~~~G~~v~~-~~~--------p~~~~~~------------------~~~~~~~~~e~~~~~~~~~~~~~~~ 318 (476)
T 2gi3_A 266 RFEEALKLLERLGAKVER-VKI--------PHIKYSV------------------ATYYVIAPAEASSNLARFDGVKYGL 318 (476)
T ss_dssp HHHHHHHHHHHTTCEEEE-ECC--------TTGGGHH------------------HHHHHHHHHHHHTC-----------
T ss_pred HHHHHHHHHHHCCCEEEE-eCC--------CchHHHH------------------HHHHHHHHHHHHHHHHHhhcccccc
Confidence 9999988886 776632 222 2211110 00111111122111
Q ss_pred ------hhhhhh-hhCCCCCHHHHHHHHHhhcCCH-----HHHHHHHHHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCC
Q 044294 291 ------HGDWVT-TVKPDLGPGISERVWEAVRTSA-----QKIDVCQSVKTELRAALSALLGDHGILVIPTVPGPPPKLQ 358 (431)
Q Consensus 291 ------~~~~~~-~~~~~~~~~~~~~l~~g~~~s~-----~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~~~ 358 (431)
+.+++. .....+++.++.++..+..++. .+|.++++.|++++++++++|+++|+||+||++.+||+++
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~ 398 (476)
T 2gi3_A 319 RIKEKGLREMYMKTRNVGFGEEVRRRIMIGTFTLSAAYYEAYFNKAMKVRRKISDELNEVLSQYDAILTPTSPVTAFKIG 398 (476)
T ss_dssp -------------CCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSEEEEESCSSCCCBTT
T ss_pred ccccccHHHHHHhhhhhhcCHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCccc
Confidence 111222 1234577888888877655443 3788999999999999999999999999999999999987
Q ss_pred CCcchHHHHHHhhhhhhcccccCCCceeeeeCcCCCCCceEEEEecCCCChHHHHHHHHHHHHHHH
Q 044294 359 MDPSALEVFRARAFSLLSIAGVSGFCQVSIPLGLHDNLPVAISLLAKHGSDGFLLNLVETLHNTLK 424 (431)
Q Consensus 359 ~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~G~~~GlPvGlqivg~~~~D~~LL~~A~~lE~~~~ 424 (431)
+.......+. ...||.++|++|+|++|||+|+.+|||+||||+|++|+|..||++|++||+.++
T Consensus 399 ~~~~~~~~~~--~~~~t~~~nl~G~PaisvP~g~~~GlPvGvqlvg~~~~d~~lL~~A~~lE~~~~ 462 (476)
T 2gi3_A 399 EIKDPLTYYL--MDIFTIPANLAGLPAISVPFGFSNNLPVGVQVIGRRFADGKVFRIARAIEKNSP 462 (476)
T ss_dssp TCCCHHHHHT--TTTTTHHHHHHTCCEEEEEEEEETTEEEEEEEECCTTCHHHHHHHHHHHHHHCT
T ss_pred ccccchhhhh--ccceeccccccCCceEEEecccCCCCCeEEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 6322222222 235799999999999999999989999999999999999999999999999874
No 7
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A
Probab=100.00 E-value=8.3e-92 Score=699.64 Aligned_cols=394 Identities=22% Similarity=0.309 Sum_probs=311.9
Q ss_pred CCCcCeeeeccccCCCCCCCCCCCccceEEEeeccccCCccCCCCchhhhhcCCCCCCChHHHHHHHhCCCeEEeecCcC
Q 044294 5 DSDYGAFMEKFVLQPSSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMD 84 (431)
Q Consensus 5 ~~~~~a~~~~~~~~~~~~~~~~pL~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~rL~~aGaii~gkt~~~ 84 (431)
++.+|||...... ++...||||||||+|||||+|+|++||+||..|.++ ++.+||++|+|||+|||||+||||||
T Consensus 68 ~~~~~a~~~~~~~---~g~~~gpL~GvPi~vKD~i~v~G~~Tt~Gs~~~~~~--~~~~DA~vV~rLr~AGAvilGKTn~~ 142 (521)
T 3a1k_A 68 ENPLSAWYVTTSI---PPTSDGVLTGRRVAIKDNVTVAGVPMMNGSRTVEGF--TPSRDATVVTRLLAAGATVAGKAVCE 142 (521)
T ss_dssp TCTTSCEEEEEEE---CCSSCCTTTTCEEEEETTBCCTTSCBCTTCTTTTTB--CCSSCCHHHHHHHHTTCEEEEEECCC
T ss_pred cchhhhhHHHHhh---cCCCCCCCCCCEEEEEcCcccCCcccCCCChhhcCC--CCCCchHHHHHHHHCCCEEEEeeChh
Confidence 3457777755432 245679999999999999999999999999999864 78899999999999999999999999
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHhcCCCceeeeccCCCcccccccccccccccCCCCCccCCCCCC
Q 044294 85 EMAYSINGENKHYGTPTNPCAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYCGIFGFRPSHSAVSTAGVIP 164 (431)
Q Consensus 85 e~~~~~~~~~~~~G~~~NP~~~~~~~GGSS~Gsaaavaag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPt~G~v~~~G~~p 164 (431)
||+++.+++|++||+|+||||++|+|||||||||||||+|++++|+|||||||||+||+||||||||||+||||+.|++|
T Consensus 143 Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGSAAAVAag~~~~alGtDtgGSIR~PAa~cGvvGlKPT~Grvs~~G~~p 222 (521)
T 3a1k_A 143 DLCFSGSSFTPASGPVRNPWDRQREAGGSSGGSAALVANGDVDFAIGGDQGGSIRIPAAFCGVVGHKPTFGLVPYTGAFP 222 (521)
T ss_dssp GGGCCSSSSCCTTCCCEETTEEEEECCSSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHHTSEEEECSTTTSCCTTBCC
T ss_pred hHhhCCCCCCCCCCCcCCCCCCCCCCCCCCchHHHHHhcCCcceecccCCCCCCCcChHHcCCeeEecCCCcCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccccCCHHHHHHHHHHHhcCCCCCCC------------------CCCceEEEecchhhccCCCchHHHHHHH
Q 044294 165 MAQSFDTVGWFAWDPKILNRVGRVLLQLADDVNL------------------VRPSQVIFAEDCLQLSSIPSDRVTQGLV 226 (431)
Q Consensus 165 ~~~s~d~~Gp~arsv~d~~~~~~~~~~~~~~~~~------------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 226 (431)
+++++|++||||||++|++.+++++.+.+ ..|+ .+..||++..+.+.. ...++++.+.++
T Consensus 223 ~~~sld~~Gp~aRsv~D~a~~l~vlag~d-~~D~~~~~~~~~~~~~~~l~~~~~~lrIgv~~~~~~~-~~~~~~v~~a~~ 300 (521)
T 3a1k_A 223 IERTIDHLGPITRTVHDAALMLSVIAGRD-GNDPRQADSVEAGDYLSTLDSDVDGLRIGIVREGFGH-AVSQPEVDDAVR 300 (521)
T ss_dssp SCGGGCEEEEEESSHHHHHHHHHHHCSCC-SSCTTSCTTCCCCCSSTTTTSCCTTCEEEEEGGGSCC-SSSCHHHHHHHH
T ss_pred cccccCeeCceeCcHHHHHHHHHHHhCCC-CCCccccccCCCcchhhhhccCccCcEEEEECccccc-cCCCHHHHHHHH
Confidence 99999999999999999999999987532 2221 234578887664321 123678899999
Q ss_pred HHHHHHh--CCcceeeeeccccccccccchHHHhhhcccccccccchHHHHHHHHHHHH-------------HHHHHhhh
Q 044294 227 KSVEKLF--GGHIIENVILGDYVKDKVPSLQHFLSEGNKEQEYSIPSLAALSSAMRLLQ-------------RYEFKNNH 291 (431)
Q Consensus 227 ~a~~~l~--g~~~~~~~~l~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-------------~~e~~~~~ 291 (431)
++++.|. |+++++ ++ +|........+. .+ ........+. ..+....+
T Consensus 301 ~a~~~L~~~Ga~v~e-v~--------~p~~~~~~~~~~--------~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 362 (521)
T 3a1k_A 301 AAAHSLTEIGCTVEE-VN--------IPWHLHAFHIWN--------VI-ATDGGAYQMLDGNGYGMNAEGLYDPELMAHF 362 (521)
T ss_dssp HHHHGGGGGTCEEEE-EC--------CTHHHHHHHHHH--------HH-HHHHHHHHTTTTTTTCSSSCSCCCHHHHHHH
T ss_pred HHHHHHHHCCCEEEE-eC--------CCchHhHHHHHH--------HH-HHHHHHhhhhhccccccchhhhhhHHHHHHH
Confidence 9998886 666532 22 222211100000 00 0000000000 00111223
Q ss_pred hhhhhhhCCCCCHHHHHHHHHhh----cCCHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCCCcchHHHH
Q 044294 292 GDWVTTVKPDLGPGISERVWEAV----RTSAQKIDVCQSVKTELRAALSALLGDHGILVIPTVPGPPPKLQMDPSALEVF 367 (431)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~l~~g~----~~s~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~~~~~~~~~~~~ 367 (431)
..|.......+++.++.++..+. .++..+|.++++.|+++++.|+++|+++|+||+||+|.+||++++.......+
T Consensus 363 ~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~p~~a~~~~~~~~~~~~~ 442 (521)
T 3a1k_A 363 ASRRIQHADALSETVKLVALTGHHGITTLGGASYGKARNLVPLARAAYDTALRQFDVLVMPTLPYVASELPAKDVDRATF 442 (521)
T ss_dssp HHHHHHSGGGSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHCSEEEEESCSSCCCBCCCTTCCHHHH
T ss_pred HHHhhhhhhhcCHHHHHHHHhchhhhccCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCCcccccccCchhhH
Confidence 33444445568899998887663 35677999999999999999999999999999999999999998643222222
Q ss_pred HH---hhhhhhcccccCCCceeeeeCcCCCCCceEEEEecCCCChHHHHHHHHHHHHHH
Q 044294 368 RA---RAFSLLSIAGVSGFCQVSIPLGLHDNLPVAISLLAKHGSDGFLLNLVETLHNTL 423 (431)
Q Consensus 368 ~~---~~~~~t~~~nl~G~PaisvP~G~~~GlPvGlqivg~~~~D~~LL~~A~~lE~~~ 423 (431)
.. .++.||.++|++|+|+||||+|+.+|||+||||+|++|+|.+||++|++||+..
T Consensus 443 ~~~~~~~~~~t~~~nl~G~PaisvP~g~~~GlPvGlQlvg~~~~d~~LL~~A~~~E~~~ 501 (521)
T 3a1k_A 443 ITKALGMIANTAPFDVTGHPSLSVPAGLVNGLPVGMMITGRHFDDATVLRVGRAFEKLR 501 (521)
T ss_dssp HHHHHTTCTTTHHHHHHCCCEEEEEEEEETTEEEEEEEECSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhcccccchhcCCCcEEeecccCCCCCeeEEEEcCCCCHHHHHHHHHHHHHhh
Confidence 22 244679999999999999999998999999999999999999999999999943
No 8
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A
Probab=100.00 E-value=6.4e-92 Score=699.78 Aligned_cols=394 Identities=20% Similarity=0.277 Sum_probs=319.2
Q ss_pred CCCCCCCcCeeeeccccC-C--CCCCCCCCCccceEEEeecc-ccCCccCCCCchhhh--hcCCCCCCChHHHHHHHhCC
Q 044294 1 MASRDSDYGAFMEKFVLQ-P--SSSAHQLPLSGLTFAIKDIF-DVDGHVTGFGNPDWA--RTHSAATSTAPAVLAVLSGG 74 (431)
Q Consensus 1 ~~~~~~~~~a~~~~~~~~-~--~~~~~~~pL~Gvp~~vKD~~-~~~g~~tt~Gs~~~~--~~~~~~~~da~~v~rL~~aG 74 (431)
|+++|+.+|||++...++ + ++.+ .||||||||+||||| +++|++||+||..|. ++ ++.+||++|+|||+||
T Consensus 35 i~~~~~~lna~~~~~~~~Al~~A~~d-~gpL~GvPi~vKD~~~~v~G~~Tt~Gs~~~~~~~~--~~~~dA~vV~rLr~AG 111 (493)
T 3a2q_A 35 VQAVNPEINAVIIPLFEKARRESELA-SGPFAGVPYLLKDLTVVSQGDINTSSIKGMKESGY--RADHDAYFVQRMRAAG 111 (493)
T ss_dssp HHHHHHHHCCEEEECHHHHHHHHHHC-CSTTTTCEEEEESSSSCCTTSBCCTTCHHHHHHTC--BCSSCCHHHHHHHHHT
T ss_pred HHHhCCccCeEEecCHHHHHHHhhhc-CCCcCCcEEEEecCCcCcCCCcccccChhhhhcCC--CCCCCHHHHHHHHHCC
Confidence 356689999999876542 1 1112 699999999999999 999999999999998 64 7889999999999999
Q ss_pred CeEEeecCcCcccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHhcCCCceeeeccCCCcccccccccccccccCCC
Q 044294 75 ATSIGKTIMDEMAYSINGENKHYGTPTNPCAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYCGIFGFRPSH 154 (431)
Q Consensus 75 aii~gkt~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSS~Gsaaavaag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPt~ 154 (431)
|||+||||||||+++.+|+|++||+|+||||++|+|||||||||||||+|++|+|+|||||||||+||+||||||||||+
T Consensus 112 Aii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAAAVAaG~~~~alGtDtgGSIRiPAa~cGv~GlKPT~ 191 (493)
T 3a2q_A 112 FVLLGKTNTPEMGNQVTTEPEAWGATRNPWNLGRSVGGSSGGSGAAVAAALSPVAHGNDAAGAVRIPASVCGVVGLKPTR 191 (493)
T ss_dssp CEEEEEECCSGGGCSSSCCCTTTCCCCBTTBTTBCCCSSSHHHHHHHHTTSCSEEEEEESSSTTHHHHHHHTSEEEECST
T ss_pred CceEEEcChhhhhcCCCCCCCCCCCCCCCCCCCCCCCcCcHHHHHHHHcCCCceeeecCCCcccccchhhcCcceEEcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCCC--C-CCCCCCCccccccCCHHHHHHHHHHHhcCCCCCC-----------------CCCCceEEEecchhhcc
Q 044294 155 SAVSTAGV--I-PMAQSFDTVGWFAWDPKILNRVGRVLLQLADDVN-----------------LVRPSQVIFAEDCLQLS 214 (431)
Q Consensus 155 G~v~~~G~--~-p~~~s~d~~Gp~arsv~d~~~~~~~~~~~~~~~~-----------------~~~~~~i~~~~~~~~~~ 214 (431)
||||+.|+ + +.++++|++||||||++|++.+++++.+.+ ..| ..++.||++..+.+...
T Consensus 192 Grvs~~g~~~~~~~~~sld~~Gp~arsv~D~a~~l~~l~g~d-~~d~~~~~~p~~~~~~~~~~~~~~lrIgv~~~~~~~~ 270 (493)
T 3a2q_A 192 GRISPGPLVTDSDNVAGAAHEGLFARSVRDIAALLDVVSGHR-PGDTFCAPTASRPYAQGISENPGSLRVGVLTHNPVGD 270 (493)
T ss_dssp TSBCCCSSCCHHHHHHTTCEEEEEESSHHHHHHHHHHHBSCC-TTCSCCCCCCSSCHHHHTTSCCCSCEEEECCSCTTCS
T ss_pred CccCCCCCcccccccccCceecCccCCHHHHHHHHHHHcCCC-CCCcccccCCCcchhhhcccCCCCCEEEEECCccccC
Confidence 99999998 5 788899999999999999999999987532 222 12345777776543101
Q ss_pred CCCchHHHHHHHHHHHHHh--CCcceeeeeccccccccccchHHHhhhcccccccccchHHHHHHHHHHHHHHHHHh---
Q 044294 215 SIPSDRVTQGLVKSVEKLF--GGHIIENVILGDYVKDKVPSLQHFLSEGNKEQEYSIPSLAALSSAMRLLQRYEFKN--- 289 (431)
Q Consensus 215 ~~~~~~~~~~~~~a~~~l~--g~~~~~~~~l~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~--- 289 (431)
...++++.+.++++++.|. |+++++ .+ +|.+.. . .+...+..+...|++.
T Consensus 271 ~~~~~~v~~a~~~a~~~L~~~G~~v~~-~~--------~~~~~~---~-------------~~~~~~~~~~~~e~~~~~~ 325 (493)
T 3a2q_A 271 FALDPECAAAARGAAAALAALGHDVND-AY--------PEALGD---R-------------SFLKDYSTICDVAIAREIE 325 (493)
T ss_dssp SCCCHHHHHHHHHHHHHHHHTTCEEEE-CC--------CGGGGC---C-------------THHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEE-eC--------CCccCH---H-------------HHHHHHHHHHHHHHHHHHH
Confidence 2347889999999998886 766532 11 121110 0 0011122233333333
Q ss_pred hhhhhhh--hhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHh-CCCCEEEEcCCCCCCCCCCCCcch---
Q 044294 290 NHGDWVT--TVKPDLGPGISERVWEAVRTSAQKIDVCQSVKTELRAALSALL-GDHGILVIPTVPGPPPKLQMDPSA--- 363 (431)
Q Consensus 290 ~~~~~~~--~~~~~~~~~~~~~l~~g~~~s~~~~~~a~~~r~~~~~~~~~~~-~~~DvLl~Pt~~~~ap~~~~~~~~--- 363 (431)
.+..++. .....+++.++.+++.+..++..+|.++++.|+++++++.++| +++|+||+||++.+||++++....
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~ 405 (493)
T 3a2q_A 326 RNGELIGRPLTEDDVEWTSWEMVKRADQVTGRAFAACVDELRYYAGKVERWWEAGWDLLILPTVTRQTPEIGELMLAKGT 405 (493)
T ss_dssp HHHHHHTSCCCTTTSCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESCSSCCCBTTTTCCCTTC
T ss_pred HHHHHhcCccChhhcCHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCCCCCCCccccccccc
Confidence 2233331 2345688999999999999999999999999999999999999 999999999999999998754211
Q ss_pred ---------HHHHHHhhhhhhcccccCCCceeeeeCcCC-CCCceEEEEecCCCChHHHHHHHHHHHHHHH
Q 044294 364 ---------LEVFRARAFSLLSIAGVSGFCQVSIPLGLH-DNLPVAISLLAKHGSDGFLLNLVETLHNTLK 424 (431)
Q Consensus 364 ---------~~~~~~~~~~~t~~~nl~G~PaisvP~G~~-~GlPvGlqivg~~~~D~~LL~~A~~lE~~~~ 424 (431)
...+ ..+..||.++|++|+|++|||+|++ +|||+||||+|++|+|.+||++|++||+.++
T Consensus 406 ~~~~~~~~~~~~~-~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvGvQlvg~~~~d~~lL~~A~~lE~~~~ 475 (493)
T 3a2q_A 406 DLEGRQSAFISGS-LQMLAFTVPFNVSGQPAISLPIGMSSDGMPIGVQIVAAYGREDLLLQVAAQLEGALP 475 (493)
T ss_dssp CCCSSCGGGSHHH-HHHHTTTTHHHHHCCCEEEEEEEECTTSCEEEEEEEESTTCHHHHHHHHHHHHHHSC
T ss_pred ccccccchhhhhh-hhhhcccccccccCCCceeccCCcCCCCCCeEEEEecCCCChHHHHHHHHHHHHhcC
Confidence 1112 2345689999999999999999986 8999999999999999999999999999864
No 9
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A*
Probab=100.00 E-value=3.4e-91 Score=695.51 Aligned_cols=391 Identities=25% Similarity=0.292 Sum_probs=307.1
Q ss_pred CCCC---CCcCeeeeccccC----------CCCCCCCCCCccceEEEeeccccCCccCCCCchhhhhcCCCCCCChHHHH
Q 044294 2 ASRD---SDYGAFMEKFVLQ----------PSSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVL 68 (431)
Q Consensus 2 ~~~~---~~~~a~~~~~~~~----------~~~~~~~~pL~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~ 68 (431)
+++| |.+|||++..+++ ..++...||||||||+|||||+|+|++||+||..|.+. ++ +||++|+
T Consensus 39 ~~~~~~~~~lna~~~~~~~Al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~G~~Tt~Gs~~~~~~--~~-~dA~vV~ 115 (503)
T 1m22_A 39 AALDRTGPRLRAVIELNPDALKEAAERDRERRDGRLRGPLHGIPLLLKDNINAAPMATSAGSLALQGF--RP-DDAYLVR 115 (503)
T ss_dssp HHHTTSTTCCCCEEEECTTHHHHHHHHHHHHHTTCCCSTTTTCEEEEETTBCCTTSCCCTTCGGGTTC--CC-CCCHHHH
T ss_pred HHhcCCCCceEEEEECCHHHHHHHHHHHHHHHcCCCCCCcCCceeEeecccccCCCCcCCCCHhhcCC--CC-CCcHHHH
Confidence 4456 8999999877543 13456779999999999999999999999999999864 67 9999999
Q ss_pred HHHhCCCeEEeecCcCcccc-----cCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHhcCCCceeeeccCCCccccccc
Q 044294 69 AVLSGGATSIGKTIMDEMAY-----SINGENKHYGTPTNPCAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPAS 143 (431)
Q Consensus 69 rL~~aGaii~gkt~~~e~~~-----~~~~~~~~~G~~~NP~~~~~~~GGSS~Gsaaavaag~~~~a~GtD~gGSiR~PAa 143 (431)
|||+|||||+||||||||++ +.+|+|++||+|+||||++|+|||||||||||||+|++|+|+|||||||||+||+
T Consensus 116 rLr~AGAii~GKTn~~Efa~~~~~~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAaAVAag~~~~alGtDtgGSIRiPAa 195 (503)
T 1m22_A 116 RLRDAGAVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRISHSPCGSSSGSAVAVAANLASVAIGTETDGSIVCPAA 195 (503)
T ss_dssp HHHHTTCEEEEEECCSHHHHCSCTTCCTTEETTTEECCCTTSTTBCCCSSSHHHHHHHHTTSSSEEEEEESSSTTHHHHH
T ss_pred HHHHCCCEEEeccCHHHHhcccCCCCCCCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHcCCCceeeecCCCchhhhhHH
Confidence 99999999999999999998 7789999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCCccCCCCCCCCCCCCccccccCCHHHHHHHHHHHhcCCCCCC---------------------CCCCc
Q 044294 144 YCGIFGFRPSHSAVSTAGVIPMAQSFDTVGWFAWDPKILNRVGRVLLQLADDVN---------------------LVRPS 202 (431)
Q Consensus 144 ~~Gv~GlkPt~G~v~~~G~~p~~~s~d~~Gp~arsv~d~~~~~~~~~~~~~~~~---------------------~~~~~ 202 (431)
||||||||||+||||+.|++|+++++|++||||||++|++.+++++.+.+ ..| ..+..
T Consensus 196 ~cGvvGlKPT~Grvs~~G~~p~~~sld~~Gp~arsv~D~a~~l~vl~g~d-~~d~~~~~~~~~~~~~~~~~~~~~~~~~l 274 (503)
T 1m22_A 196 INGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLTAIAGRD-DADPATATMPGRAVYDYTARLDPQGLRGK 274 (503)
T ss_dssp HTTSEEEECCTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHCCCC-TTCGGGGGCTTCCCCCGGGGCCTTTTTTC
T ss_pred HhCceEEECCCCCcCCCCcCCccCCCCeeCcccCCHHHHHHHHHHHcCCC-CCCccccccccccccchhhhccccCCCCC
Confidence 99999999999999999999999999999999999999999999987532 211 12456
Q ss_pred eEEEecchhhccCCCchHHHHHHHHHHHHHh--CCcceeeeeccccccccccchHHHhhhcccccccccchHHHHHHHHH
Q 044294 203 QVIFAEDCLQLSSIPSDRVTQGLVKSVEKLF--GGHIIENVILGDYVKDKVPSLQHFLSEGNKEQEYSIPSLAALSSAMR 280 (431)
Q Consensus 203 ~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~l~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (431)
||++..+.+. .++++.+.++++++.|. |++++ ++++ |.+.++..... .....+...
T Consensus 275 rIgv~~~~~~----~~~~v~~a~~~a~~~L~~~G~~v~-~~~~--------p~~~~~~~~~~---------~~~~~e~~~ 332 (503)
T 1m22_A 275 RIGLLQTPLL----KYRGMPPLIEQAATELRRAGAVVV-PVEL--------PNQGAWAEAER---------TLLLYEFKA 332 (503)
T ss_dssp EEEEECSGGG----GSTTHHHHHHHHHHHHHHTTCEEE-EECC--------TTTTTTHHHHH---------HHHHHHHHH
T ss_pred EEEEECcccc----CCHHHHHHHHHHHHHHHHcCCEEE-EeCC--------CcHHHHHHHHH---------HHHHHHHHH
Confidence 7888766542 36678888888888876 77663 2222 21110000000 000001111
Q ss_pred HHHHHHHH-----hhhhhhhh-------hhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH--HHHHhCC--CCE
Q 044294 281 LLQRYEFK-----NNHGDWVT-------TVKPDLGPGISERVWEAVRTSAQKIDVCQSVKTELRAA--LSALLGD--HGI 344 (431)
Q Consensus 281 ~l~~~e~~-----~~~~~~~~-------~~~~~~~~~~~~~l~~g~~~s~~~~~~a~~~r~~~~~~--~~~~~~~--~Dv 344 (431)
.+..+... ..+.+++. .....+++.+++++..+..++..+|.++++.|++++++ +.++|++ +|+
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~D~ 412 (503)
T 1m22_A 333 GLERYFNTHRAPLRSLADLIAFNQAHSKQELGLFGQELLVEADATAGLADPAYIRARSDARRLAGPEGIDAALAAHQLDA 412 (503)
T ss_dssp HHHHHHHHTTCSCCSHHHHHHHHHHTHHHHSSSSCCHHHHHHHTCCCTTCHHHHHHHHHHHHHHTTTTHHHHHHHTTCSE
T ss_pred HHHHHHHhcCcccccHHHHHHHhhhcchhcccccCHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCE
Confidence 11111000 00011110 12345778888888888888999999999988888776 9999984 999
Q ss_pred EEEcCCCCCCCCCCCCcchHHHHHHhhhhhhcccccCCCceeeeeCcCCCCCceEEEEecCCCChHHHHHHHHHHHHHHH
Q 044294 345 LVIPTVPGPPPKLQMDPSALEVFRARAFSLLSIAGVSGFCQVSIPLGLHDNLPVAISLLAKHGSDGFLLNLVETLHNTLK 424 (431)
Q Consensus 345 Ll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~G~~~GlPvGlqivg~~~~D~~LL~~A~~lE~~~~ 424 (431)
||+||+ .++|+++... +.+ ...||.++|++|+|++|||+|+.+|||+||||+|++|+|.+||++|++||+.++
T Consensus 413 ll~Pt~-~~a~~~~~~~---~~~---~~~~t~~~nl~G~PaisvP~g~~~GlPvGvqlvg~~~~d~~lL~~A~~~E~~~~ 485 (503)
T 1m22_A 413 LVAPTT-GVAWPIRSEG---DDF---PGESYSAAAVAGYPSLTVPMGQIDGLPVGLLFMGTAWSEPKLIEMAYAYEQRTR 485 (503)
T ss_dssp EEEECC-CCCCBTTC------CC---TTCCHHHHHHHTCCEEEEEEEEETTEEEEEEEECSTTCHHHHHHHHHHHHHHHC
T ss_pred EEeCCC-ccCccccccc---Ccc---cccccccchhhCCCeEEeccccCCCCCeEEEEECCCCChHHHHHHHHHHHHhhC
Confidence 999999 5666665211 111 145799999999999999999889999999999999999999999999999875
Q ss_pred H
Q 044294 425 E 425 (431)
Q Consensus 425 ~ 425 (431)
.
T Consensus 486 ~ 486 (503)
T 1m22_A 486 A 486 (503)
T ss_dssp C
T ss_pred C
Confidence 4
No 10
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A*
Probab=100.00 E-value=2.2e-86 Score=662.48 Aligned_cols=407 Identities=22% Similarity=0.295 Sum_probs=305.9
Q ss_pred CCCCCCcCeeeeccccC---CCCCCCCCCCccceEEEeeccccCCccCCCCchhhhhcCCCCCCChHHHHHHHhCCCeEE
Q 044294 2 ASRDSDYGAFMEKFVLQ---PSSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSI 78 (431)
Q Consensus 2 ~~~~~~~~a~~~~~~~~---~~~~~~~~pL~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~rL~~aGaii~ 78 (431)
++.|+.+|||++.++++ .......||||||||+|||||+++|++||+||..+.+. ++.+||++|+||++||||++
T Consensus 99 ~~~~~~~na~~~~~~~a~~~a~~~~~~gpL~GvPi~vKD~~~~~G~~tt~Gs~~~~~~--~~~~da~vV~~L~~aGAv~~ 176 (573)
T 3ppm_A 99 WEVNKGTNCVTSYLTDCETQLSQAPRQGLLYGVPVSLKECFSYKGHDSTLGLSLNEGM--PSESDCVVVQVLKLQGAVPF 176 (573)
T ss_dssp HHHHHHHCCEEEECTTHHHHHHHCCTTCTTTTCEEEEETTBCCBTCCCCTTCGGGTTC--CBSSCCHHHHHHHHTTCEEE
T ss_pred HHhCCccCEEEEECHHHHHHHHhhhhcCCcCCCeEEEEcccCCCCCCcCCcChhhcCC--CCCcchHHHHHHHHCCCEEE
Confidence 45688999999876542 11112349999999999999999999999999999864 78999999999999999999
Q ss_pred eecCcCcccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHhcCCCceeeeccCCCcccccccccccccccCCCCCcc
Q 044294 79 GKTIMDEMAYSINGENKHYGTPTNPCAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYCGIFGFRPSHSAVS 158 (431)
Q Consensus 79 gkt~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSS~Gsaaavaag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPt~G~v~ 158 (431)
||||||||+++.++.|+.||+|+||||+.++|||||||||||||+|++++|+|||||||||+||+||||||||||+||||
T Consensus 177 gKTn~pe~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaaaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs 256 (573)
T 3ppm_A 177 VHTNVPQSMFSYDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLKPTGNRLS 256 (573)
T ss_dssp EEECCCTTSCSSSCEETTTEECCCTTCTTBCCCSSSHHHHHHHHTTSCSEEEEEESSSTTHHHHHHHTCEEEECCGGGSC
T ss_pred EecCCccccccCCCCCCCCCCcCCCCCCCCCCCCCCchHHHHHHcCCCcEEEecCCCcchhhhhHHhCeeEEeCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCC----CCccccccCCHHHHHHHHHHHhcCC----CCC-----------CCCCCceEEEecchhhccCCCch
Q 044294 159 TAGVIPMAQS----FDTVGWFAWDPKILNRVGRVLLQLA----DDV-----------NLVRPSQVIFAEDCLQLSSIPSD 219 (431)
Q Consensus 159 ~~G~~p~~~s----~d~~Gp~arsv~d~~~~~~~~~~~~----~~~-----------~~~~~~~i~~~~~~~~~~~~~~~ 219 (431)
+.|++|.+++ +|++||||||++|++.+++++.+.+ |.. ...++.||++..+.. ...+++
T Consensus 257 ~~G~~~~~~~~~~~~~~~Gp~arsv~D~a~~l~~l~~~d~~~~d~~~~~~~~~~~~~~~~~~lrigv~~~~~--~~~~~p 334 (573)
T 3ppm_A 257 KSGLKGCVYGQTAVQLSLGPMARDVESLALCLKALLCEHLFTLDPTVPPLPFREEVYRSSRPLRVGYYETDN--YTMPSP 334 (573)
T ss_dssp CTTBCCSCCSCCSSCCEEEEEESSHHHHHHHHHHHSSHHHHHHCTTSCCCCCCHHHHTCCCCCEEEECSCCS--SSCCCH
T ss_pred CCCCCCcccccCcccccccceeCcHHHHHHHHHHHhcccccccCCCCCccccchhhcccCCCCEEEEEcccC--CCCCCH
Confidence 9999998875 8999999999999999999876421 110 013456788765432 234578
Q ss_pred HHHHHHHHHHHHHh--CCcceeeeeccccccccccch--HHHhhhcccc------cccccchHHHHHHHHHHHHHHHHHh
Q 044294 220 RVTQGLVKSVEKLF--GGHIIENVILGDYVKDKVPSL--QHFLSEGNKE------QEYSIPSLAALSSAMRLLQRYEFKN 289 (431)
Q Consensus 220 ~~~~~~~~a~~~l~--g~~~~~~~~l~~~~~~~~p~l--~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~e~~~ 289 (431)
++.++++++++.|. |+++++ .++.... .....+ ..+..++... .+...+.+...... .....
T Consensus 335 ~v~~a~~~a~~~L~~~G~~v~~-~~~p~~~-~~~~~~~~~~~~~dg~~~~~~~~~~e~~~p~~~~~~~~------~~lp~ 406 (573)
T 3ppm_A 335 AMRRALIETKQRLEAAGHTLIP-FLPNNIP-YALEVLSTGGLFSDGGRSFLQNFKGDFVDPCLGDLILI------LRLPS 406 (573)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEE-CCCTTHH-HHHHTHHHHHHTTBTTHHHHGGGTTSCCCGGGTTHHHH------HTSCH
T ss_pred HHHHHHHHHHHHHHHCCCEEEE-ecCccHH-HHHHHHHHHHHhhhhHHHHHHHhccCcccHHHHHHhhh------ccchH
Confidence 89999999998886 777643 2221110 000000 0000000000 00000000000000 00000
Q ss_pred hhhhhhhhhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhC--CCCEEEEcCCCCCCCCCCCCcchHHHH
Q 044294 290 NHGDWVTTVKPDLGPGISERVWEAVRTSAQKIDVCQSVKTELRAALSALLG--DHGILVIPTVPGPPPKLQMDPSALEVF 367 (431)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~l~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~--~~DvLl~Pt~~~~ap~~~~~~~~~~~~ 367 (431)
.....+......+.+.+...+..+...+..+|++++..|+++++++.+.|+ ++|+||+|+ +.+|++++....
T Consensus 407 ~l~~~~~~~~~~~~p~~~~~~~~~~~~s~~e~~~~~~~r~~~r~~~~~~w~~~~lDaLL~Pt-~~pA~~h~~~~~----- 480 (573)
T 3ppm_A 407 WFKRLLSLLLKPLFPRLAAFLNNMRPRSAEKLWKLQHEIEMYRQSVIAQWKAMNLDVLLTPM-LGPALDLNTPGR----- 480 (573)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHTSBCBHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEC-CCSCCBTTCGGG-----
T ss_pred HHHHHHHHHhhhcchHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHhhcCCCEeeCCC-CCCCcCCccccc-----
Confidence 000000001122445555566667778899999999999999999999995 599999999 558888774211
Q ss_pred HHhhhhhhcccccCCCceeeeeCcCC------------------------------CCCceEEEEecCCCChHHHHHHHH
Q 044294 368 RARAFSLLSIAGVSGFCQVSIPLGLH------------------------------DNLPVAISLLAKHGSDGFLLNLVE 417 (431)
Q Consensus 368 ~~~~~~~t~~~nl~G~PaisvP~G~~------------------------------~GlPvGlqivg~~~~D~~LL~~A~ 417 (431)
...++.||.+||++|+|+++||+|+. +||||||||||++|+|++||++|+
T Consensus 481 ~~~~~~YT~l~NLLDyPA~vVPvg~v~~~~d~~~~~~~~~~~~~~d~~~~~~~~~~~GlPVgVQiVGrr~~EEklL~~a~ 560 (573)
T 3ppm_A 481 ATGAVSYTMLYNCLDFPAGVVPVTTVTAEDDAQMELYKGYFGDIWDIILKKAMKNSVGLPVAVQCVALPWQEELCLRFMR 560 (573)
T ss_dssp CGGGGHHHHHHHHTTCCEEEEEEEECCHHHHHHHTTCCCSSCSHHHHHHHHHTCSCTTCEEEEEEECCTTCHHHHHHHHH
T ss_pred cccccchhhhhHhhCCCeEEEecccccccccccccccccccchhhhhhhhhhhhccCCCceEEEEeCCCCcHHHHHHHHH
Confidence 12346789999999999999999953 699999999999999999999999
Q ss_pred HHHHHHHHh
Q 044294 418 TLHNTLKEE 426 (431)
Q Consensus 418 ~lE~~~~~~ 426 (431)
.+|+.++.+
T Consensus 561 ~IE~~l~~~ 569 (573)
T 3ppm_A 561 EVEQLMTPQ 569 (573)
T ss_dssp HHHHHHCTT
T ss_pred HHHHHHhcc
Confidence 999999876
No 11
>3u85_B Histone-lysine N-methyltransferase MLL; menin, MEN1, JUND, ledgf, TPR, transcription, epigeneti cancer; 3.00A {Homo sapiens}
Probab=29.99 E-value=13 Score=18.18 Aligned_cols=8 Identities=38% Similarity=0.833 Sum_probs=4.5
Q ss_pred CCCCCchH
Q 044294 109 VPGGSSSG 116 (431)
Q Consensus 109 ~~GGSS~G 116 (431)
-||||+++
T Consensus 8 rpg~s~~s 15 (21)
T 3u85_B 8 RPGTTGGG 15 (26)
T ss_pred CCCcccCC
Confidence 46766543
No 12
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=21.31 E-value=77 Score=16.66 Aligned_cols=16 Identities=19% Similarity=0.206 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHHH
Q 044294 409 DGFLLNLVETLHNTLK 424 (431)
Q Consensus 409 D~~LL~~A~~lE~~~~ 424 (431)
=..||+.|..+|+.=+
T Consensus 5 vq~LLeAAeyLErrEr 20 (26)
T 1pd7_B 5 IQMLLEAADYLERRER 20 (26)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3579999999997543
No 13
>1wz4_A Major surface antigen; helix turn helix, gene regulation; NMR {Synthetic}
Probab=20.02 E-value=28 Score=18.54 Aligned_cols=8 Identities=25% Similarity=0.430 Sum_probs=3.4
Q ss_pred CCCCCCch
Q 044294 108 RVPGGSSS 115 (431)
Q Consensus 108 ~~~GGSS~ 115 (431)
..+||||+
T Consensus 19 ~pAGGSs~ 26 (26)
T 1wz4_A 19 FPAGGXXX 26 (26)
T ss_dssp CCSCC---
T ss_pred cCCcccCC
Confidence 35788875
Done!