RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 044294
(431 letters)
>gnl|CDD|166363 PLN02722, PLN02722, indole-3-acetamide amidohydrolase.
Length = 422
Score = 774 bits (2000), Expect = 0.0
Identities = 347/422 (82%), Positives = 382/422 (90%), Gaps = 2/422 (0%)
Query: 3 SRDSDYGAFMEKFVLQPSSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATS 62
+ + DYGAFMEKFVL P+SS+H LPL GLTFA+KDIFDV+G+VTGFGNPDWARTHSAATS
Sbjct: 2 ATNPDYGAFMEKFVLSPTSSSHDLPLHGLTFAVKDIFDVEGYVTGFGNPDWARTHSAATS 61
Query: 63 TAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPCAPDRVPGGSSSGSAVAVG 122
TAPAVLAVL GGAT +GKTIMDEMAYSINGEN HYGTPTNP APDRVPGGSSSGSAVAVG
Sbjct: 62 TAPAVLAVLRGGATCVGKTIMDEMAYSINGENAHYGTPTNPIAPDRVPGGSSSGSAVAVG 121
Query: 123 AKLVDFSLGTDTGGSVRVPASYCGIFGFRPSHSAVSTAGVIPMAQSFDTVGWFAWDPKIL 182
AKLVDFSLGTDTGGSVRVPASYCGIFGFRPSH AVST GVIPMAQSFDTVGWFA DP IL
Sbjct: 122 AKLVDFSLGTDTGGSVRVPASYCGIFGFRPSHGAVSTVGVIPMAQSFDTVGWFARDPVIL 181
Query: 183 NRVGRVLLQLADDVNLVRPSQVIFAEDCLQLSSIPSDRVTQGLVKSVEKLFG-GHIIENV 241
RVG VLLQ DVN ++PSQ+I AEDC QLSSIP DR+ Q LVKSVEKLFG G I+++V
Sbjct: 182 KRVGHVLLQQP-DVNPIKPSQIIIAEDCFQLSSIPHDRLVQVLVKSVEKLFGGGDIVKHV 240
Query: 242 ILGDYVKDKVPSLQHFLSEGNKEQEYSIPSLAALSSAMRLLQRYEFKNNHGDWVTTVKPD 301
LGDYV+DKVPSL+HF+S+ KEQEY+IPSLAALSSAMRLLQRYEFK NHG+W+T VKP+
Sbjct: 241 NLGDYVEDKVPSLKHFMSKEIKEQEYNIPSLAALSSAMRLLQRYEFKINHGEWITAVKPE 300
Query: 302 LGPGISERVWEAVRTSAQKIDVCQSVKTELRAALSALLGDHGILVIPTVPGPPPKLQMDP 361
GPGISER+WEAVRT+ +KID CQSVKTELRAAL+ LLG+ G+LVIPTVPGPPPKLQ DP
Sbjct: 301 FGPGISERIWEAVRTTEEKIDACQSVKTELRAALTTLLGEFGVLVIPTVPGPPPKLQADP 360
Query: 362 SALEVFRARAFSLLSIAGVSGFCQVSIPLGLHDNLPVAISLLAKHGSDGFLLNLVETLHN 421
+ LE FRARAFSLLSIAGVSGFCQVSIPLGLHDNLPV++SLLAKHGSDGFLLNLVE+L+
Sbjct: 361 TTLESFRARAFSLLSIAGVSGFCQVSIPLGLHDNLPVSVSLLAKHGSDGFLLNLVESLYG 420
Query: 422 TL 423
T+
Sbjct: 421 TI 422
>gnl|CDD|181375 PRK08310, PRK08310, amidase; Provisional.
Length = 395
Score = 416 bits (1072), Expect = e-144
Identities = 175/421 (41%), Positives = 235/421 (55%), Gaps = 31/421 (7%)
Query: 1 MASRDSDYGAFM-EKFVLQPSSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSA 59
M + D + AF+ + P +++ PL+GL FA+KD+FDV G+VTG GNPDW
Sbjct: 1 MLNHDP-FNAFIAKPDKPLPHAASG--PLAGLRFAVKDVFDVAGYVTGCGNPDWLAESPV 57
Query: 60 ATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPCAPDRVPGGSSSGSAV 119
AT TAPAV +L+ GA +GKT DE+A+S+NG+N HYGTP NP APDRVPGGSSSGSA
Sbjct: 58 ATRTAPAVEKLLAAGARFVGKTQTDELAFSLNGQNAHYGTPVNPAAPDRVPGGSSSGSAA 117
Query: 120 AVGAKLVDFSLGTDTGGSVRVPASYCGIFGFRPSHSAVSTAGVIPMAQSFDTVGWFAWDP 179
AV L DF+LGTDTGGSVR PAS+CG++G RP+H +S GV+P+A SFDTVGWFA D
Sbjct: 118 AVAGGLADFALGTDTGGSVRAPASFCGLYGLRPTHGRISLEGVMPLAPSFDTVGWFARDI 177
Query: 180 KILNRVGRVLLQLADDVNLVRPSQVIFAEDCLQLSSIPSDRVTQGLVKSVEKLFGGHIIE 239
+L RVG VLL D +++ D L + + + G
Sbjct: 178 ALLERVGEVLLG-DDAQEFPLTQRLLIPVDLFALLDPAVRAALEAALARLRPHLG----- 231
Query: 240 NVILGDYVKDKVPSLQHFLSEGNKEQEYSIPSLAALSSAMRLLQRYEFKNNHGDWVTTVK 299
VP L SL A R+LQ E HG W+++
Sbjct: 232 -----PAKPASVPPL----------------SLDEWYEAFRVLQAAEAWETHGAWISSGN 270
Query: 300 PDLGPGISERVWEAVRTSAQKIDVCQSVKTELRAALSALLGDHGILVIPTVPGPPPKLQM 359
P LGPG+++R +A +++ ++ + L+ALLG +L++PTVPG P
Sbjct: 271 PQLGPGVADRFAAGAEVTADQVEAARARRAAFARELAALLGPDAVLLLPTVPGAAPLRGA 330
Query: 360 DPSALEVFRARAFSLLSIAGVSGFCQVSIPLGLHDNLPVAISLLAKHGSDGFLLNLVETL 419
ALE +R RA LL IAG++G Q+S+PL D P +SL+ GSD LL L +T+
Sbjct: 331 PFEALEAYRERALRLLCIAGLAGLPQISLPLASVDGAPFGLSLIGPRGSDRSLLALAQTI 390
Query: 420 H 420
Sbjct: 391 A 391
>gnl|CDD|223232 COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit
and related amidases [Translation, ribosomal structure
and biogenesis].
Length = 475
Score = 241 bits (617), Expect = 6e-75
Identities = 117/417 (28%), Positives = 177/417 (42%), Gaps = 40/417 (9%)
Query: 27 PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEM 86
PL+G+ A+KD D G T G+ A A V + + GA +GKT MDE
Sbjct: 73 PLAGVPIAVKDNIDTAGLPTTAGSK--ALEDYVPPYDATVVERLRAAGAVILGKTNMDEF 130
Query: 87 AYSINGENKHYGTPTNPCAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYCG 146
A + EN +G NP +RVPGGSS GSA AV A LV +LG+DTGGS+R+PA++CG
Sbjct: 131 AMGSSTENSAFGPTRNPWNLERVPGGSSGGSAAAVAAGLVPLALGSDTGGSIRIPAAFCG 190
Query: 147 IFGFRPSHSAVSTAGVIPMAQSFDTVGWFAWDPKILNRVGRVLLQL-ADDVNLVRPSQVI 205
+ G +P++ VS GV+P+A S D +G A + + V+ D L P V
Sbjct: 191 LVGLKPTYGRVSRYGVVPLASSLDQIGPLARTVRDAALLLDVIAGPDPRDSPLPPPPPVP 250
Query: 206 FAEDCLQLSSIPSDRVTQGLVKSVEKLFGGHI-IENVILGDYVKDKVPSLQHFLSEGNKE 264
A L+ + G+ K + + +++ + G +
Sbjct: 251 PA-----LAGKDLKGLRIGVPKELGGGGPLDPDVRAAFEA--------AVKALEAAGAEV 297
Query: 265 QEYSIP------SLAALSSAMRLLQRYEFKNNHGDWVTTVKPDLGPGISERV-------- 310
E S+P +LAA A +RY + + T GP + R+
Sbjct: 298 VEVSLPLLSDDYALAAYYLARFDGERYGLRAA-DLYGKTRAEGFGPEVKRRIMLGTYLLS 356
Query: 311 WEAVRTSAQKIDVCQSVKTELRAALSALLGDHGILVIPTVPGPPPKLQMDPSALE--VFR 368
++ + KT +R A L + +L+ PT P P PK+ S + +
Sbjct: 357 AGYYDAYYRR-----AQKTLIRRAFDKLFEEVDVLLTPTTPTPAPKIGESESDGDDPLEM 411
Query: 369 ARAFSLLSIAGVSGFCQVSIPLGLHDN-LPVAISLLAKHGSDGFLLNLVETLHNTLK 424
A ++G +S+P G + LPV + L+ D LL L L L
Sbjct: 412 YLLDVFTVPANLAGLPAISVPAGFTADGLPVGLQLIGPAFDDATLLRLAAALEQALG 468
>gnl|CDD|216494 pfam01425, Amidase, Amidase.
Length = 431
Score = 210 bits (536), Expect = 2e-63
Identities = 119/409 (29%), Positives = 178/409 (43%), Gaps = 45/409 (11%)
Query: 27 PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEM 86
PL G+ ++KD DV G T G+ +T L + GA +GKT MDE
Sbjct: 46 PLHGVPISLKDNIDVKGVPTTAGSKALEGYPPPYDATVVERL--RAAGAVILGKTNMDEF 103
Query: 87 AYSINGENKHYGTPTNPCAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYCG 146
A EN +G NP R PGGSS GSA AV A LV ++GTDTGGS+R+PA++CG
Sbjct: 104 AMGSTTENSAFGPTRNPWDLSRTPGGSSGGSAAAVAAGLVPLAIGTDTGGSIRIPAAFCG 163
Query: 147 IFGFRPSHSAVSTAGVIPMAQSFDTVGWFA---------------WDPKILNRVGRVLLQ 191
+ G +P++ VS GV+P + S D VG A +DP +
Sbjct: 164 LVGLKPTYGRVSRYGVVPYSSSLDHVGPLARTVEDAALLLDVIAGYDPADPTSAPSPVPD 223
Query: 192 LADDV-NLVRPSQV-IFAEDCLQLSSIPSDRVTQGLVKSVEKLFGGHIIENVILGDYVKD 249
A+ + ++ ++ + ED R + ++E L GH + V+
Sbjct: 224 FAEPLKKSLKGLRIGVPREDFYFSLDPEVQRAVRKAAAALEAL--GHEV--------VEV 273
Query: 250 KVPSLQHFLSEGNKEQEYSIPSLAALSSAMRLLQRYE--FKNNHGDWVTTVKPDLGPGIS 307
+ PSL+H L Y I A S+ L + Y GD V +S
Sbjct: 274 EPPSLKHALPLY-----YIIAPAEASSNLSDLDELYPRIRDELLGDEVKRRIELGAYALS 328
Query: 308 ERVWEAVRTSAQKIDVCQSVKTELRAALSALLGDHGILVIPTVPGPPPKL-QMDPSALEV 366
A AQK+ + LR + L + +L+ PT P P P+L + S +
Sbjct: 329 AGYSGAYYLKAQKV------RRLLRREFAGLFEELDVLLSPTTPTPAPRLGEAADSPTVL 382
Query: 367 FRARAFSLLSI-AGVSGFCQVSIPLGL-HDNLPVAISLLAKHGSDGFLL 413
+ F+ ++ A ++G +S+P G D LPV + ++ G D LL
Sbjct: 383 YNLLDFTANTVPANLAGLPAISLPAGFSEDGLPVGLQIIGPPGDDETLL 431
>gnl|CDD|232842 TIGR00132, gatA, aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase,
A subunit. In many species, Gln--tRNA ligase is
missing. tRNA(Gln) is misacylated with Glu after which a
heterotrimeric amidotransferase converts Glu to Gln.
This model represents the amidase chain of that
heterotrimer, encoded by the gatA gene. In the Archaea,
Asn--tRNA ligase is also missing. This amidase subunit
may also function in the conversion of Asp-tRNA(Asn) to
Asn-tRNA(Asn), presumably with a different recognition
unit to replace gatB. Both Methanococcus jannaschii and
Methanobacterium thermoautotrophicum have both authentic
gatB and a gatB-related gene, but only one gene like
gatA. It has been shown that gatA can be expressed only
when gatC is also expressed. In most species expressing
the amidotransferase, the gatC ortholog is about 90
residues in length, but in Mycoplasma genitalium and
Mycoplasma pneumoniae the gatC equivalent is as the
C-terminal domain of a much longer protein. Not
surprisingly, the Mycoplasmas also represent the most
atypical lineage of gatA orthology. This orthology group
is more narrowly defined here than in Proc Natl Acad Aci
USA 94, 11819-11826 (1997). In particular, a Rhodococcus
homolog found in association with nitrile hydratase
genes and described as an enantiomer-selective amidase
active on several 2-aryl propionamides, is excluded
here. It is likely, however, that the amidase subunit
GatA is not exclusively a part of the Glu-tRNA(Gln)
amidotransferase heterotrimer and restricted to that
function in all species [Protein synthesis, tRNA
aminoacylation].
Length = 460
Score = 166 bits (422), Expect = 1e-46
Identities = 129/460 (28%), Positives = 195/460 (42%), Gaps = 78/460 (16%)
Query: 5 DSDYGAFMEKFVLQPSSSAHQL------PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHS 58
AF+E V + A +L PL+G+ A+KD G VT +
Sbjct: 27 KDKINAFLEVTVEKALKQAKKLDKAILTPLAGIPIAVKDNISTKGIVTTCASKILENYIP 86
Query: 59 AATSTAPAVLAVL-SGGATSIGKTIMDEMAYSINGENKHYGTPTNPCAPDRVPGGSSSGS 117
+T V+ L GA IGKT MDE A + E +G NP DRVPGGSS GS
Sbjct: 87 PYDAT---VIERLKQAGALIIGKTNMDEFAMGSSTETSAFGPTKNPWNLDRVPGGSSGGS 143
Query: 118 AVAVGAKLVDFSLGTDTGGSVRVPASYCGIFGFRPSHSAVSTAGVIPMAQSFDTVGWFAW 177
A AV A L FSLG+DTGGS+R PAS+CG+ GF+P++ VS G++ A S D +G FA
Sbjct: 144 AAAVAADLAPFSLGSDTGGSIRQPASFCGVVGFKPTYGRVSRYGLVAYASSLDQIGPFA- 202
Query: 178 DPKILNRVGRVLLQLADDVNLVRPSQVIFAEDCLQLSS--IPSDRVTQGLVKSVEKLFGG 235
+ +D+ L+ VI D +S +P + L K ++ L G
Sbjct: 203 -------------RTVEDIALL--LDVISGHDKRDSTSAKVPDPEFFEELKKDLKGLKVG 247
Query: 236 HIIENVILGDY---VKDKVPS-LQHFLSEGNKEQEYSIPS---------LAALSSAMRLL 282
+ E + V++K + L+ G + E S P + + S A L
Sbjct: 248 VVKE--FSEEMDKEVQEKFENALEVLEELGAEIVEVSFPHVKYALPIYYIISPSEASSNL 305
Query: 283 QRYE--------FKNNHGDWVTTVKPDLGPG-------------ISERVWEAVRTSAQKI 321
RY+ + N + G G +S ++ AQK
Sbjct: 306 ARYDGIRYGYRIEEPNSLKELYAKTRAEGFGEEVKRRIMLGNYALSAGYYDKYYLKAQK- 364
Query: 322 DVCQSVKTELRAALSALLGDHGILVIPTVPGPPPKL---QMDPSALEVFRARAFSLLSIA 378
V+T + L + ++V PT P P K+ DP LE++ + ++ A
Sbjct: 365 -----VRTLIIDDFLKLFEEVDVIVSPTAPTLPFKIGEKLDDP--LEMYLSDILTV--PA 415
Query: 379 GVSGFCQVSIPLGL-HDNLPVAISLLAKHGSDGFLLNLVE 417
++G +S+P G+ LP+ + ++ K D LL +
Sbjct: 416 NLAGLPAISVPCGVKEKGLPIGLQIIGKCFDDKTLLQVSY 455
>gnl|CDD|236030 PRK07488, PRK07488, indole acetimide hydrolase; Validated.
Length = 472
Score = 163 bits (416), Expect = 1e-45
Identities = 125/418 (29%), Positives = 172/418 (41%), Gaps = 64/418 (15%)
Query: 26 LPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDE 85
L L+G+ IKD + G T G P AT AP V +L GA +GK M E
Sbjct: 72 LLLAGVPIVIKDNINTAGMPTTAGTPALLG-FVPATD-APVVQRLLDAGAVPLGKANMHE 129
Query: 86 MAYSINGENKHYGTPTNPCAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYC 145
+A+ I N +G NP P R+ GGSS G+A AV A+L LGTDTGGSVR+PA+ C
Sbjct: 130 LAFGITSNNGAFGAVRNPYDPARIAGGSSGGTAAAVAARLAPAGLGTDTGGSVRIPAALC 189
Query: 146 GIFGFRPSHSAVSTAGVIPMAQSFDTVGWFAW---DPKILNRVGRVLLQLADDVNLVRPS 202
G+ G RP+ S GV+P++ + DTVG A D +L+ V+ A V +
Sbjct: 190 GVVGLRPTVGRYSGDGVVPISHTRDTVGPIARSVADLALLD---AVITGDAALPAPVALA 246
Query: 203 QVIFAEDCLQLSSIPSDRVTQGLVKSVEKLFGGHIIENVI--LGDYVKDKVPSLQHFLSE 260
+ +P+ GL V + E + L V L E
Sbjct: 247 GLRLG--------VPAAPFWDGLDPDVAAV-----AEAALAKLAAAGVTFVELDLPGLHE 293
Query: 261 GNKEQEYSIPSLAALSSAMRLLQRYEFKNNHGDWVTTV-----KPD---------LGPGI 306
N+ + I AL A+ L+ Y +N G + PD P I
Sbjct: 294 LNEAVGFPI----ALYEALADLRAYLRENGAGVSFEELVARIASPDVRAIFRDLLDPPQI 349
Query: 307 SERVWEAVRTSAQKIDVCQSVKTELRAALSALLGDHGI--LVIPTVPGPPPKLQMDPS-- 362
SE + A + L+A HG+ ++ PT P P + D +
Sbjct: 350 SEDAYRAAL---------DVGRPRLQAWYRQAFARHGLDAILFPTTPLTAPPIGDDDTVI 400
Query: 363 ----ALEVFRA--RAFSLLSIAGVSGFCQVSIPLGL-HDNLPVAISLLAKHGSDGFLL 413
A+ F R S AG+ G +S+P GL LPV + L GSD LL
Sbjct: 401 LNGAAVPTFARVIRNTDPASNAGLPG---LSLPAGLTPHGLPVGLELDGPAGSDRRLL 455
>gnl|CDD|236409 PRK09201, PRK09201, amidase; Provisional.
Length = 465
Score = 163 bits (414), Expect = 2e-45
Identities = 123/403 (30%), Positives = 171/403 (42%), Gaps = 32/403 (7%)
Query: 27 PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEM 86
PL+G+ FA+K++FDV G T G+ R AT A AV + + GA +G MDE
Sbjct: 71 PLAGVPFAVKNLFDVAGLTTLAGS-KINRDRPPATRDATAVRRLEAAGAVLVGALNMDEY 129
Query: 87 AYSINGENKHYGTPTNPCAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYCG 146
AY EN HYG NP R+ GGSS GSA AV A LV F+LG+DT GS+RVPAS CG
Sbjct: 130 AYGFTTENSHYGATRNPHDLTRIAGGSSGGSAAAVAAGLVPFTLGSDTNGSIRVPASLCG 189
Query: 147 IFGFRPSHSAVSTAGVIPMAQSFDTVGWFAWDPKILNRVGRVLLQLADDVNLVRPSQVIF 206
IFG +P++ +S AG P S D +G FA V L L DV
Sbjct: 190 IFGLKPTYGRLSRAGSFPFVASLDHIGPFA------RSVAD--LALVYDVLQGPD----- 236
Query: 207 AEDCLQLSSIPSDRVTQGLVKSVEKLFGGHIIENVILGDYVK-----DKVPSLQHFLSEG 261
+D Q + P++ L + E L +LG Y + ++
Sbjct: 237 PQDPFQ-ADRPAEPTAPLLDRGAEGLRIA------VLGGYFAQWADPEARAAVDRVAKAL 289
Query: 262 NKEQEYSIPSLAALSSAMRLLQRYEFKNNHGDWVTTVKPDLGPGISERVWEAVRTSAQKI 321
+E +P A +A ++ E N H + T D P +R+ A
Sbjct: 290 GATREVELPEAARARAAAFIITASEGGNLHLPALRTRPQDFDPASRDRLLAGAMLPAAWY 349
Query: 322 DVCQSVKTELRAALSALLGDHGILVIPTVPGPPPKL-----QMDPSALEVFRARAFSLLS 376
Q + R A+ L +L+ P P P + ++D L V RA L
Sbjct: 350 VQAQRFRRWFRQAVLELFEHVDVLIAPATPCSAPLIGQETMRIDGVELPV-RANLGILTQ 408
Query: 377 IAGVSGFCQVSIPLGLHDNLPVAISLLAKHGSDGFLLNLVETL 419
G V++PL LP+ + L+A + L L
Sbjct: 409 PISFIGLPVVAVPLRTPGGLPIGVQLIAAPWREDLALRAAAAL 451
>gnl|CDD|233982 TIGR02715, amido_AtzE, amidohydrolase, AtzE family. Members of
this protein family are aminohydrolases related to, but
distinct from, glutamyl-tRNA(Gln) amidotransferase
subunit A. The best characterized member is the biuret
hydrolase of Pseudomonas sp. ADP, which hydrolyzes
ammonia from the three-nitrogen compound biuret to yield
allophanate. Allophanate is also an intermediate in urea
degradation by the urea carboxylase/allophanate
hydrolase pathway, an alternative to urease [Unknown
function, Enzymes of unknown specificity].
Length = 452
Score = 161 bits (409), Expect = 8e-45
Identities = 115/401 (28%), Positives = 164/401 (40%), Gaps = 22/401 (5%)
Query: 27 PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEM 86
PL+G+ FA+K++FDV G T G R + A A V + + GA +G MDE
Sbjct: 64 PLAGVPFAVKNLFDVAGLTTLAGA-KINRDLAPAKRDATLVQRLSAAGAVLVGALNMDEF 122
Query: 87 AYSINGENKHYGTPTNPCAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYCG 146
AY EN HYG NP R+ GGSS GSA AV A LV FSLG+DT GS+RVPAS CG
Sbjct: 123 AYGFTTENAHYGPTRNPHDLTRIAGGSSGGSAAAVAAGLVPFSLGSDTNGSIRVPASLCG 182
Query: 147 IFGFRPSHSAVSTAGVIPMAQSFDTVGWFAWDPKILNRVGRVLLQLADDVNLVRPSQVIF 206
+FG +P++ +S GV P S D VG FA + L V +Q D P
Sbjct: 183 VFGLKPTYGRLSRQGVFPFVASLDHVGPFARSVEDLALAYDV-MQGPD------PQDPFC 235
Query: 207 AEDCLQLSSIPSDRVTQGLVKSVEKLFGGHIIENVILGDYVKDKVPSLQHFLSEGNKEQE 266
+ + + GL +V GG +N + + ++
Sbjct: 236 TDRPAEPTVPLLPAGISGLRIAV---LGGWFQQNAD-----PEALAAVGRVAKALGATTI 287
Query: 267 YSIPSLAALSSAMRLLQRYEFKNNHGDWVTTVKPDLGPGISERVWEAVRTSAQKIDVCQS 326
+P +A ++ E N H D + T D P +R+ A Q
Sbjct: 288 VELPDAERARAAAFVITASEGGNLHLDALRTRPQDFDPATRDRLLAGALLPASWYAQAQR 347
Query: 327 VKTELRAALSALLGDHGILVIPTVPGPPPKL-----QMDPSALEVFRARAFSLLSIAGVS 381
+ R A+ L +L+ P P P + +D + V RA +
Sbjct: 348 FRHWFRDAIRELFQRVDVLIAPATPCSAPLIGQETMIIDGVPVPV-RANLGIFTQPISFA 406
Query: 382 GFCQVSIPLGLHDNLPVAISLLAKHGSDGFLLNLVETLHNT 422
G ++ PL LP+ + L+A + L L
Sbjct: 407 GLPVLAAPLPRPGRLPIGVQLIAAPWREDLCLRAAAVLERQ 447
>gnl|CDD|233981 TIGR02713, allophanate_hyd, allophanate hydrolase. Allophanate
hydrolase catalyzes the second reaction in an
ATP-dependent two-step degradation of urea to ammonia
and C02, following the action of the biotin-containing
urea carboxylase. The yeast enzyme, a fusion of
allophanate hydrolase to urea carboxylase, is designated
urea amidolyase [Central intermediary metabolism,
Nitrogen metabolism].
Length = 561
Score = 158 bits (402), Expect = 4e-43
Identities = 123/417 (29%), Positives = 167/417 (40%), Gaps = 58/417 (13%)
Query: 25 QLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMD 84
+LPL G+ FA+KD DV G T P +A T A V + + GA +GKT +D
Sbjct: 29 RLPLYGVPFAVKDNIDVAGLPTTAACPAFAYT---PEEDATVVALLRAAGAIVVGKTNLD 85
Query: 85 EMAYSINGENKHYGTPTNPCAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASY 144
+ A + G YG N P + GGSSSGSAVAV LV F+LGTDT GS RVPA+
Sbjct: 86 QFATGLVGTRSPYGAVRNAFDPAYISGGSSSGSAVAVARGLVPFALGTDTAGSGRVPAAL 145
Query: 145 CGIFGFRPSHSAVSTAGVIPMAQSFDTVGWFAWDPKILNRVGRVLLQL-ADDVNLVRPSQ 203
I G +P+ VST GV+P +S D V FA +V R+ A D
Sbjct: 146 NNIVGLKPTKGLVSTTGVVPACRSLDCVSIFALTVADAEQVLRIAAAPDARDPYSRPLPA 205
Query: 204 -------------VIFAEDCLQLSSIPSDRVTQGLVKSVEKLFGGHIIENVILGDYVKDK 250
V A ++ V+ +E L G + + D
Sbjct: 206 AALRRFPPPPRVGVPRAAQLEFFGDSQAEAAFAAAVERLEAL--GVEVVEI-------DF 256
Query: 251 VPSLQHFLSEGNKEQEYSIPSLAALSSAMRLLQRYEFKNNHGDWVTTVKPDLGPGISERV 310
P L+ Y P +A +A+ EF D L P + +
Sbjct: 257 APFLE------TAALLYEGPWVAERYAAVG-----EFVEAQPD-------ALDPVVRGII 298
Query: 311 WEAVRTSAQKIDVCQSVKTELRAALSALLGDHGILVIPTVPGPPPKLQM--DP----SAL 364
A R SA Q LR ALL +L++PT P P ++ DP S L
Sbjct: 299 TSATRFSAADAFAAQYRLAALRRKAEALLAGVDVLLVPTAPTHPTIEEVLADPVGLNSRL 358
Query: 365 EVFRARAFSLLSIAGVSGFCQVSIPLGLH-DNLPVAISLLAKHGSDGFLLNLVETLH 420
+ +LL C V++P G D LP ++L+ D L +L L
Sbjct: 359 GTY-TNFVNLLD------LCAVAVPAGFRSDGLPFGVTLIGPAFHDAALASLGRRLQ 408
>gnl|CDD|235921 PRK07056, PRK07056, amidase; Provisional.
Length = 454
Score = 153 bits (390), Expect = 4e-42
Identities = 68/153 (44%), Positives = 96/153 (62%), Gaps = 7/153 (4%)
Query: 26 LPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSA-ATSTAPAVLAVLSGGATSIGKTIMD 84
PL+G+ ++KD+FDV G VT G+ + A + APAV + GA IG+T M
Sbjct: 70 SPLAGIPVSVKDLFDVAGQVTRAGSR--VLADAPPAAADAPAVARLRRAGAVLIGRTNMT 127
Query: 85 EMAYSINGENKHYGTPTNPCAPD----RVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRV 140
E A+S G N HYGTP NP D R+PGGSSSG+AV+V + +LGTDTGGS+R+
Sbjct: 128 EFAFSGLGLNPHYGTPRNPWRRDVGDGRIPGGSSSGAAVSVADGMAAAALGTDTGGSIRI 187
Query: 141 PASYCGIFGFRPSHSAVSTAGVIPMAQSFDTVG 173
PA+ CG+ GF+P+ V G +P++ + D++G
Sbjct: 188 PAALCGLTGFKPTARRVPLQGAVPLSTTLDSIG 220
Score = 39.5 bits (93), Expect = 0.002
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 8/105 (7%)
Query: 316 TSAQKIDVCQSVKTELRAALSALLGDHGILVIPTVPGPPPK---LQMDPSALEVFRARAF 372
++A ID+ + + A +A L LV+PTVP PP+ L+ D +A FR A
Sbjct: 342 SAADYIDL-LAARAAWIARAAARLARFDALVMPTVPIVPPRIADLEADDAAF--FRTNAL 398
Query: 373 SL--LSIAGVSGFCQVSIPLGLHDNLPVAISLLAKHGSDGFLLNL 415
L S+ C +S+P PV + L G D LL +
Sbjct: 399 LLRNPSLINFLDGCALSLPCHAPGEAPVGLMLAGAPGRDDRLLAI 443
>gnl|CDD|234572 PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransferase subunit A;
Reviewed.
Length = 459
Score = 151 bits (385), Expect = 3e-41
Identities = 66/159 (41%), Positives = 84/159 (52%), Gaps = 20/159 (12%)
Query: 27 PLSGLTFAIKDIFDVDGHVT--------GFGNP-DWARTHSAATSTAPAVLAVLSGGATS 77
PL+G+ AIKD G T + P D AT A GA
Sbjct: 55 PLAGIPIAIKDNICTKGIRTTCASKILENYVPPYD-------ATVVEKLKAA----GAVI 103
Query: 78 IGKTIMDEMAYSINGENKHYGTPTNPCAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGS 137
+GKT MDE A + EN +G NP +RVPGGSS GSA AV A L +LG+DTGGS
Sbjct: 104 LGKTNMDEFAMGSSTENSAFGPTKNPWDLERVPGGSSGGSAAAVAAGLAPAALGSDTGGS 163
Query: 138 VRVPASYCGIFGFRPSHSAVSTAGVIPMAQSFDTVGWFA 176
+R PA++CG+ G +P++ VS G+I A S D +G FA
Sbjct: 164 IRQPAAFCGVVGLKPTYGRVSRYGLIAFASSLDQIGPFA 202
Score = 40.1 bits (95), Expect = 0.002
Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 16/103 (15%)
Query: 318 AQKIDVCQSVKTELRAALSALLGDHGILVIPTVPGPPPKL---QMDPSALEVFRARAFSL 374
AQK V+T ++ +++ PT P K+ DP L ++ + F++
Sbjct: 363 AQK------VRTLIKQDFEKAFEKVDVILGPTAPTTAFKIGEKTDDP--LAMYLSDIFTV 414
Query: 375 -LSIAGVSGFCQVSIPLGLHDN-LPVAISLLAKHGSDGFLLNL 415
++AG+ +S+P G D LPV + L+ K+ + LLN+
Sbjct: 415 PANLAGLPA---ISVPAGFDDGGLPVGLQLIGKYFDEETLLNV 454
>gnl|CDD|235698 PRK06102, PRK06102, hypothetical protein; Provisional.
Length = 452
Score = 151 bits (383), Expect = 5e-41
Identities = 121/418 (28%), Positives = 175/418 (41%), Gaps = 78/418 (18%)
Query: 27 PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEM 86
L G+ A KD+FDV G VT G+ A + A+ A V + G SIG+T M E
Sbjct: 69 LLDGIPIAWKDLFDVAGSVTTAGSVVLANA-APASRDAAVVALLARAGMVSIGRTNMSEF 127
Query: 87 AYSINGENKHYGTPTNPCAPD--RVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASY 144
A+S G N HYGTP NP + D R+PGGSSSGSAVAV A LV ++GTDTGGSVR+PA++
Sbjct: 128 AFSGLGLNPHYGTPVNPRSTDVPRIPGGSSSGSAVAVAAGLVPVAMGTDTGGSVRIPAAF 187
Query: 145 CGIFGFRPSHSAVSTAGVIPMAQSFDTVGWFA-------W-DPKILNRVGRVLLQLA-DD 195
G+ G++ + S GV P+A+S D++G W D + +++
Sbjct: 188 NGLVGYKATRGRYSMDGVFPLAKSLDSLGPLCRSVRDAVWIDAAMRGLTAPDVVRRPLAG 247
Query: 196 VNLVRPSQVIFAEDCLQLSSIPSDRVTQGLVKSVEKLFGGHIIENVILGDYVKDKVPSLQ 255
+ LV P V+F D G+ + E +++
Sbjct: 248 LRLVVPETVVF------------DDAEPGVRAAFEA---------------------AVE 274
Query: 256 HFLSEGNKEQEYSIPSLAALSSAMRLLQRYEFKNNHGDWVT-----TVKPDLGPGISERV 310
+ G + + P+ + + L+ R HG VT + L + R+
Sbjct: 275 RLQAAGALVERQAFPAFQEI---LDLIAR------HGWLVTAEAFALHQERLDGPDAARM 325
Query: 311 WEAVRT---SAQKIDVCQSVK-TELRAALSALLG---DHGILVIPTVP--GPP--PKLQM 359
V +KI + E R L A + +L PTV PP P
Sbjct: 326 DPRVVKRTRLGRKITASDYIALLEARERLIAQVTRELGGALLATPTVAHVAPPLAPLEAD 385
Query: 360 DPSALEVF---RARAFSLLSIAGVSGFCQVSIPLGLHD-NLPVAISLLAKHGSDGFLL 413
D ++F + C VS+P G +PV + L A G D LL
Sbjct: 386 D----DLFFATNLKTLRNTMPGNFLDMCGVSLPCGTGAAGMPVGLLLSAPAGRDERLL 439
>gnl|CDD|168315 PRK05962, PRK05962, amidase; Validated.
Length = 424
Score = 148 bits (376), Expect = 2e-40
Identities = 111/407 (27%), Positives = 177/407 (43%), Gaps = 34/407 (8%)
Query: 27 PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEM 86
PL G +IKD+FDV G T G+ R A + A V + + GA IGKT M E
Sbjct: 45 PLDGRIVSIKDLFDVAGEPTLAGSV-IRRDAPPAGADALIVQRLRNAGAVIIGKTHMTEF 103
Query: 87 AYSINGENKHYGTPTNPCAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYCG 146
A++ G N HYG P N P R+PGGSSSG+AV+V + ++G+DTGGSVR+PA+ G
Sbjct: 104 AFTPVGLNPHYGEPGNAIDPARIPGGSSSGAAVSVAEGTSEIAIGSDTGGSVRIPAALNG 163
Query: 147 IFGFRPSHSAVSTAGVIPMAQSFDTVGWFAWDPKILNRVGRVLLQLADDVNLVRPSQVIF 206
+ GF+P+ + G P++ S D++G A R + A V+
Sbjct: 164 LVGFKPTARRIPLEGAFPLSPSLDSIGPLA----------RTVADCAA------ADAVMA 207
Query: 207 AEDCLQLSSIPSDRVTQGLVKSVEKLFGGHIIENVILGDYVKDKVPSLQHFLSEGNKEQE 266
E + L +P + GL K L + D SL G + +
Sbjct: 208 GEKPIPLEVLPVAGLRIGLPKGY--LLAD------MEPDVAAAFEASLAALEKAGARIAD 259
Query: 267 YSIPSL-AALSSAMRL--LQRYEFKNNHGDWVTTVKPDLGPGISERVWEAVRTSAQKIDV 323
+I L A L+ A R+ + E + H DW+ + ++ + + ++ +
Sbjct: 260 LAIDDLIARLAEATRIGSIAGIEASHIHADWLADLDANVDIRVKRPLSRRIKVPLEAYHR 319
Query: 324 CQSVKTELRAALSALLGDHGILVIPTVPGPPPKLQMDPSALEVFRARAFSLLSIAGVSGF 383
+ L A+ L + +P P P + E + LL V+
Sbjct: 320 LMRTRAALARAMDERLAGFDMFALPATPIVAPTIASVSEDEEEYDRVENLLLRNTQVANQ 379
Query: 384 ---CQVSIPL-GLHDNLPVAISLLAKHGSDGFLLNLVETLHNTLKEE 426
C +++P+ G+ LP + L A++GSD LL ++ L+ +
Sbjct: 380 FDLCSITLPMPGM--ALPAGLMLTARNGSDRRLLAAAASVEKLLEHD 424
>gnl|CDD|236177 PRK08186, PRK08186, allophanate hydrolase; Provisional.
Length = 600
Score = 149 bits (380), Expect = 9e-40
Identities = 68/151 (45%), Positives = 86/151 (56%), Gaps = 3/151 (1%)
Query: 26 LPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDE 85
LPL G+ FA+KD DV G T P +A T A V + + GA IGKT +D+
Sbjct: 67 LPLYGVPFAVKDNIDVAGLPTTAACPAFAYT---PERDATVVARLRAAGAIVIGKTNLDQ 123
Query: 86 MAYSINGENKHYGTPTNPCAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYC 145
A + G YG N P+ V GGSSSGSAVAV LV F+LGTDT GS RVPA++
Sbjct: 124 FATGLVGTRSPYGAVRNAFDPEYVSGGSSSGSAVAVALGLVSFALGTDTAGSGRVPAAFN 183
Query: 146 GIFGFRPSHSAVSTAGVIPMAQSFDTVGWFA 176
I G +P+ +ST GV+P ++ D V FA
Sbjct: 184 NIVGLKPTLGLLSTRGVVPACRTLDCVSVFA 214
Score = 29.4 bits (67), Expect = 4.5
Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 18/103 (17%)
Query: 330 ELRAALSALLGDHGILVIPTVPGPP--PKLQMDPSALEVFRARA-----F-SLLSIAGVS 381
ELR A A+L L++PT P P ++ DP L +R F +LL
Sbjct: 355 ELRRAAEAVLAGIDALLVPTAPTHPTIAEVAADPIGLN---SRLGTYTNFVNLL------ 405
Query: 382 GFCQVSIPLGL-HDNLPVAISLLAKHGSDGFLLNLVETLHNTL 423
C +++P G D LP ++L+A +D L +L L L
Sbjct: 406 DLCALAVPAGFRADGLPFGVTLIAPAFADQALADLAARLQAAL 448
>gnl|CDD|235945 PRK07139, PRK07139, amidase; Provisional.
Length = 439
Score = 120 bits (304), Expect = 3e-30
Identities = 111/439 (25%), Positives = 175/439 (39%), Gaps = 103/439 (23%)
Query: 27 PLSGLTFAIKDIF-DVDGHVTG-------FGNPDWARTHSAATSTAPAVLAVLSGGATSI 78
PL+ F IKD F +G F + AT V +++ GA +
Sbjct: 36 PLANCVFTIKDNFATSEGPTHASSKSLENF------KPSYNAT----VVQKLINAGAKPV 85
Query: 79 GKTIMDEMAYSINGENKHYGTPTNPCAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSV 138
K DE+ G +G NP ++ GGSSSGSA A K + F++G+DTG SV
Sbjct: 86 AKVHCDELGLGGTGLFSAFGLIKNPLDSSKLVGGSSSGSA-ATFNKNISFAIGSDTGDSV 144
Query: 139 RVPASYCGIFGFRPSHSAVSTAGVIPMAQSFDTVGWFAWDPKILNRVGRVLLQLADDVNL 198
R+PAS+ G GF+PS+ A+S G+ A S DTV +F + V +D +
Sbjct: 145 RLPASFIGKVGFKPSYGAISRYGLFAYASSLDTVAYFT------HNV--------NDAII 190
Query: 199 VRPSQVIFAEDCLQLSSIPSDRVTQGLVKSVEKLFGGHI-IENVI--LGDYVKDKVPSLQ 255
+ S+V+F +D L+S+ + +V+K + + L +YV K L
Sbjct: 191 L--SKVLFGKDENDLTSVDVK------INNVKKTKPKKVAYLDCFKELEEYVAKKYKKLI 242
Query: 256 HFLSEGNKEQE---------------YSIPSLAALSSAMRLLQRYEFKN--NHGDW---- 294
+ L N E E Y I S + SS + L F N W
Sbjct: 243 NILKSENIEVEKIKIDEKLLKAIKPVYKIISYSEASSNLANLNGIAFGNREKGSSWEEIM 302
Query: 295 VTTVKPDLGPGISER-VW----------EAVRTSAQKIDVCQSVKTELRAALSALLGDHG 343
+ T G + +R + E A+K V+ ++ ++
Sbjct: 303 INTRSEGFGKMVQKRLILGSYFLEEENQEKYFLKAKK------VRRVIKNYYESIHNKFD 356
Query: 344 ILVIPTVPGPPPKLQ---------MDPSALEVFRARAFSLLSIAGVSGFCQVSIPLGLHD 394
I++ P P + MD +L+I+ + G +SIPLG ++
Sbjct: 357 IVIYPAYADIAPDIDENENKSDNYMD------------YILTISNLVGNPSLSIPLGKYN 404
Query: 395 NLPVAISLLAKHGSDGFLL 413
NLP +++ +K D LL
Sbjct: 405 NLPFNLAIDSKIYDDEKLL 423
>gnl|CDD|235723 PRK06170, PRK06170, amidase; Provisional.
Length = 490
Score = 111 bits (279), Expect = 1e-26
Identities = 54/138 (39%), Positives = 72/138 (52%), Gaps = 2/138 (1%)
Query: 27 PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEM 86
PL G+ +K+ F+V G T +G PD A AV + + GA +GKT +
Sbjct: 75 PLLGIPVTVKESFNVAGLPTTWGFPDLR--DYVPAEDAVAVARLKAAGAVILGKTNVPLG 132
Query: 87 AYSINGENKHYGTPTNPCAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYCG 146
N+ YGT NP R PGGSS GSA A+ A S+G+D GGS+RVPA YCG
Sbjct: 133 LQDWQSYNEIYGTTNNPWDLARTPGGSSGGSAAALAAGFGALSIGSDIGGSLRVPAHYCG 192
Query: 147 IFGFRPSHSAVSTAGVIP 164
++ +P+ V G IP
Sbjct: 193 VYAHKPTLGLVPLRGHIP 210
>gnl|CDD|171524 PRK12470, PRK12470, amidase; Provisional.
Length = 462
Score = 109 bits (274), Expect = 4e-26
Identities = 60/137 (43%), Positives = 81/137 (59%), Gaps = 3/137 (2%)
Query: 24 HQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIM 83
+LPL G+ AIKD DV G VT +G+ A AATS A V + + GA IGKT +
Sbjct: 69 ERLPLLGVPIAIKDDVDVAGEVTTYGS---AGHGPAATSDAEVVRRLRAAGAVIIGKTNV 125
Query: 84 DEMAYSINGENKHYGTPTNPCAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPAS 143
E+ E+ +G NP P+R PGGSS GSA AV A L +LG+D GGS+R+P++
Sbjct: 126 PELMIMPFTESLAFGATRNPWDPNRTPGGSSGGSAAAVAAGLAPVALGSDGGGSIRIPST 185
Query: 144 YCGIFGFRPSHSAVSTA 160
+CG+FG +P +S
Sbjct: 186 WCGLFGLKPQRDRISLE 202
>gnl|CDD|180437 PRK06169, PRK06169, putative amidase; Provisional.
Length = 466
Score = 102 bits (256), Expect = 1e-23
Identities = 97/357 (27%), Positives = 137/357 (38%), Gaps = 68/357 (19%)
Query: 27 PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAA---TSTAPAVLAVLSGGATSIGKTIM 83
L G+ +IKDIF G T G +R A APAV + GA +GKT
Sbjct: 71 LLDGVPVSIKDIFLTRGWPTLRG----SRAIDADGPWDVDAPAVARLREAGAVLLGKTTT 126
Query: 84 DEMAYSINGENKHYGTPTNPCAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPAS 143
E + ++ YG NP GGSS G+A AV + S+GTD GGSVR+PAS
Sbjct: 127 PEFGWKGVTDSPLYGITRNPWDTRLTAGGSSGGAAAAVALGMGPLSVGTDGGGSVRIPAS 186
Query: 144 YCGIFGFRPSHSAV---------STAGVIPMAQS-------------FDTVGWFAWDPKI 181
+CG FGF+P+ V + A V PM ++ D W A P
Sbjct: 187 FCGTFGFKPTFGRVPLYPASPFGTLAHVGPMTRTVADAALLLDVIARPDARDWSALPP-- 244
Query: 182 LNRVGRVLLQLADDVNLVRPSQVIFAEDCLQLSSIPSDRVTQGLV-KSVEKLFG-GHIIE 239
L L DV +R + ++ L + D LV ++V++L G +E
Sbjct: 245 --PTTSFLDALDRDVRGLR---IAYSPT---LGYVDVDPEVAALVAQAVQRLAALGARVE 296
Query: 240 NVILGDYVKDKVPSLQHFLSEGNKEQEYSIPSLAALSSAMRLLQRYEFKNNHGDWVTTVK 299
V G D V + G A RLL+ +
Sbjct: 297 EVDPG--FSDPVEAFHVLWFAG----------------AARLLRALP---------PGQR 329
Query: 300 PDLGPGISERVWEAVRTSAQKIDVCQSVKTELRAALSALLGDHGILVIPTVPGPPPK 356
L PG+ SA +V+ L A + A + +L+ PT+P P +
Sbjct: 330 ALLDPGLRRIAERGATYSASDYLDATAVRAALGARMGAFHERYDLLLTPTLPIPAFE 386
>gnl|CDD|235979 PRK07235, PRK07235, amidase; Provisional.
Length = 502
Score = 102 bits (255), Expect = 2e-23
Identities = 58/180 (32%), Positives = 90/180 (50%), Gaps = 21/180 (11%)
Query: 2 ASRDSDYGAFMEKFVLQPSSSAHQLPLSGLTFAIKDIFDVDG--------HVTGFGNPDW 53
+ ++ YGA+ K ++ ++ L+G T A+KD V G + GF P +
Sbjct: 65 EAEENPYGAWYVKTSIKGAAEG---KLAGKTVALKDNVAVAGVPMMNGSSTLEGF-VPSF 120
Query: 54 ARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPCAPDRVPGGS 113
A V +L GAT +GK +++ +S G NP P GGS
Sbjct: 121 ---------DATVVTRLLDAGATIVGKATCEDLCFSGGSHTSDPGPVHNPRDPGYSAGGS 171
Query: 114 SSGSAVAVGAKLVDFSLGTDTGGSVRVPASYCGIFGFRPSHSAVSTAGVIPMAQSFDTVG 173
SSGSA V A VD ++G D GGS+R+P+++CGI+G +P+H V G P+ ++ D +G
Sbjct: 172 SSGSAALVAAGEVDMAIGGDQGGSIRIPSAWCGIYGMKPTHGLVPYTGAFPIERTIDHLG 231
Score = 51.9 bits (125), Expect = 4e-07
Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 324 CQSVKTELRAALSALLGDHGILVIPTVPGPPPKLQMDPSALEVFRARAFSLLSIAG---V 380
+++ LRAA L + +LV+PT P L ++ E + +RA +++ V
Sbjct: 399 ARNLARRLRAAYDEALRKYDLLVMPTTPMVATPLPAPDASREEYVSRALEMIANTAPFDV 458
Query: 381 SGFCQVSIPLGLHDNLPVAISLLAKHGSDGFLL 413
+G +S+P GL D LPV + L+ +H + +L
Sbjct: 459 TGHPAMSVPCGLVDGLPVGLMLVGRHFDEATIL 491
>gnl|CDD|235686 PRK06061, PRK06061, amidase; Provisional.
Length = 483
Score = 93.6 bits (233), Expect = 1e-20
Identities = 53/146 (36%), Positives = 76/146 (52%), Gaps = 6/146 (4%)
Query: 24 HQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIM 83
+LPL G+ A+KD DV G T FG AT+ + V + + GA +GKT
Sbjct: 78 DRLPLLGVPIAVKDDVDVAGVPTAFGTAG---EVPPATADSEVVRRLRAAGAVIVGKTNT 134
Query: 84 DEMAYSINGENKHYGTPTNPCAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPAS 143
E+ +G NP + D PGGSS GSA AV A LV ++G+D GSVR+PA+
Sbjct: 135 CELGQWPFTSGPAFGHTRNPWSRDHTPGGSSGGSAAAVAAGLVTAAIGSDGAGSVRIPAA 194
Query: 144 YCGIFGFRPSHSAVSTAGVIPMAQSF 169
+ + G +P +ST P+ ++F
Sbjct: 195 WTHLVGIKPQRGRISTW---PLPEAF 217
>gnl|CDD|236161 PRK08137, PRK08137, amidase; Provisional.
Length = 497
Score = 92.5 bits (230), Expect = 2e-20
Identities = 56/153 (36%), Positives = 77/153 (50%), Gaps = 8/153 (5%)
Query: 27 PLSGLTFAIKD-IFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDE 85
PL G+ +KD I D T G+ A + T A V + GA +GK + E
Sbjct: 72 PLHGIPVLLKDNIDAADPMPTTAGS--LALAGNRPTRDAFLVARLRDAGAVILGKANLSE 129
Query: 86 MA-----YSINGENKHYGTPTNPCAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRV 140
A S +G + G NP A DR P GSSSGS AV A L ++GT+T GS+
Sbjct: 130 WANFRSTRSSSGWSARGGLTRNPYALDRSPCGSSSGSGAAVAAGLAAVAIGTETDGSITC 189
Query: 141 PASYCGIFGFRPSHSAVSTAGVIPMAQSFDTVG 173
PA+ G+ G +P+ VS G++P++ S DT G
Sbjct: 190 PAAINGLVGLKPTVGLVSRDGIVPISHSQDTAG 222
Score = 33.6 bits (77), Expect = 0.19
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 334 ALSALLGDHGILVIPTVPGPPPKLQMDPSALEVFRARAFSLLSIAGVSGFCQVSIPLGLH 393
+ A L +H + + P P +D + F + + A V+G+ +++P+G
Sbjct: 398 GIDAALKEHRLDAL-VAPTTGPAWLIDLINGDSFGGSSSTP---AAVAGYPHLTVPMGQV 453
Query: 394 DNLPVAISLLAKHGSDGFLLNL 415
LPV +S + S+ LL L
Sbjct: 454 QGLPVGLSFIGAAWSEARLLEL 475
>gnl|CDD|235855 PRK06707, PRK06707, amidase; Provisional.
Length = 536
Score = 90.0 bits (223), Expect = 2e-19
Identities = 52/161 (32%), Positives = 72/161 (44%), Gaps = 26/161 (16%)
Query: 22 SAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKT 81
+A +P S T+ +KD W A A V + GA +GK
Sbjct: 150 TAKVMPTSAGTYVLKD---------------WI-----ADQDATIVKQLKEEGAFVLGKA 189
Query: 82 IMDEMAYSIN-----GENKHYGTPTNPCAPDRV-PGGSSSGSAVAVGAKLVDFSLGTDTG 135
M E A ++ G + G NP P + GSSSGSA V A ++GT+T
Sbjct: 190 NMSEWANYLSFTMPSGYSGKKGQNLNPYGPIKFDTSGSSSGSATVVAADFAPLAVGTETT 249
Query: 136 GSVRVPASYCGIFGFRPSHSAVSTAGVIPMAQSFDTVGWFA 176
GS+ PA+ + G RPS VS G+IP+A++ DT G A
Sbjct: 250 GSIVAPAAQQSVVGLRPSLGMVSRTGIIPLAETLDTAGPMA 290
>gnl|CDD|236028 PRK07486, PRK07486, amidase; Provisional.
Length = 484
Score = 89.7 bits (223), Expect = 3e-19
Identities = 50/155 (32%), Positives = 71/155 (45%), Gaps = 17/155 (10%)
Query: 27 PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEM 86
L G+ A KD+ G T G+P +A A V + + GA IGKT E
Sbjct: 77 WLHGMPQAPKDLAPTKGIRTTLGSPIFA--DQVPQEDAIVVERMRAAGAIFIGKTNTPEF 134
Query: 87 AYSINGENKHYGTPTNPCAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYCG 146
+ N YG NP P R GGSS G+A A+ +++ + G+D GS+R PA++
Sbjct: 135 GLGSHTYNPVYGATRNPYDPSRSAGGSSGGAAAALALRMLPVADGSDMMGSLRNPAAFNN 194
Query: 147 IFGFRPSHSAV-------------STAGVIPMAQS 168
++GFRPS V T G PM ++
Sbjct: 195 VYGFRPSQGRVPHGPGGDVFVQQLGTEG--PMGRT 227
>gnl|CDD|181154 PRK07869, PRK07869, amidase; Provisional.
Length = 468
Score = 86.6 bits (215), Expect = 2e-18
Identities = 47/127 (37%), Positives = 63/127 (49%), Gaps = 2/127 (1%)
Query: 27 PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEM 86
SG+ IKD DV G T G+ W + A S L+ G S+GKT + E
Sbjct: 73 FFSGVPTFIKDNVDVAGLPTMHGSDAWTPRPAKADS--DFARQFLATGLISLGKTQLPEF 130
Query: 87 AYSINGENKHYGTPTNPCAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYCG 146
+S + E+ G NP D G SS GSA V A +V + D GGS+R+PA+ CG
Sbjct: 131 GFSASTEHPRLGPVRNPWNTDYSAGASSGGSAALVAAGVVPIAHANDGGGSIRIPAACCG 190
Query: 147 IFGFRPS 153
+ G +PS
Sbjct: 191 LVGLKPS 197
Score = 32.6 bits (75), Expect = 0.37
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 6/91 (6%)
Query: 331 LRAALSALLGDHGILVIPTVPGPPPKL-QMDPSA--LEVF-RARAF-SLLSIAGVSGFCQ 385
LR + G + +++ PT+ P++ +DP+ V R ++ + + +G
Sbjct: 364 LRRVYARFFGTYDVVLTPTLAHTTPEIGYLDPTQDFDTVLDRLISYVAFTPLQNATGEPA 423
Query: 386 VSIPLGLHDN-LPVAISLLAKHGSDGFLLNL 415
+S+PLG + LPV + A G + LL L
Sbjct: 424 ISLPLGQSSDGLPVGMMFSADVGDEATLLEL 454
>gnl|CDD|235915 PRK07042, PRK07042, amidase; Provisional.
Length = 464
Score = 85.4 bits (212), Expect = 6e-18
Identities = 46/128 (35%), Positives = 61/128 (47%), Gaps = 2/128 (1%)
Query: 27 PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEM 86
PL G+ IK+ G G A A + AP + GA + KT M +
Sbjct: 71 PLDGVPVTIKENIATRGVPVPLGTA--ATDLPPAAADAPPAARLREAGAVILAKTTMPDY 128
Query: 87 AYSINGENKHYGTPTNPCAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYCG 146
+G + +G NP D+ PGGSS+G+ A A LGTD GGSVR+PA +CG
Sbjct: 129 GMLSSGLSSFHGLTRNPWDLDQNPGGSSAGAGAAAAAGYGPLHLGTDIGGSVRLPAGWCG 188
Query: 147 IFGFRPSH 154
I G +PS
Sbjct: 189 IVGLKPSL 196
>gnl|CDD|236029 PRK07487, PRK07487, amidase; Provisional.
Length = 469
Score = 80.8 bits (200), Expect = 2e-16
Identities = 46/127 (36%), Positives = 63/127 (49%), Gaps = 2/127 (1%)
Query: 27 PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEM 86
PL+G+ +K D G T G + A + +P V + GA IG+T
Sbjct: 72 PLAGVPVTVKVNVDQAGFATTNGVR--LQKDLIAPADSPVVDNLRKAGAVIIGRTNTPAF 129
Query: 87 AYSINGENKHYGTPTNPCAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYCG 146
+Y +N +G NP P PGGSS G+A AV A + + GTD GGS+R PA CG
Sbjct: 130 SYRWFTDNPLHGRTLNPWDPSLTPGGSSGGAAAAVAAGIGAIAHGTDIGGSIRYPAYACG 189
Query: 147 IFGFRPS 153
+ G RP+
Sbjct: 190 VHGLRPT 196
Score = 32.6 bits (75), Expect = 0.45
Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 4/82 (4%)
Query: 328 KTELRAALSALLGDHGILVIPTVPGPPPKLQMDPSALEVFR---ARAFSLLSIAGVSGFC 384
+ L D+ +L++P P +D E FR +++ G
Sbjct: 360 RATLTRQWQLFFEDYPLLLMPVSAELPFPDDLDRQGAEGFRRVWEAQLPQIALP-FMGLP 418
Query: 385 QVSIPLGLHDNLPVAISLLAKH 406
+S+P GL +PV + L+A
Sbjct: 419 GLSVPTGLVGGVPVGVQLVAGR 440
>gnl|CDD|183377 PRK11910, PRK11910, amidase; Provisional.
Length = 615
Score = 79.3 bits (195), Expect = 8e-16
Identities = 52/163 (31%), Positives = 75/163 (46%), Gaps = 25/163 (15%)
Query: 16 VLQPSSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGA 75
+L+ + +LP S T A+KD W A V + + GA
Sbjct: 236 LLKDNIGTKELPTSAGTVALKD---------------WVIGKDATI-----VENLKANGA 275
Query: 76 TSIGKTIMDEMAYSI-----NGENKHYGTPTNPCAPDRVPGGSSSGSAVAVGAKLVDFSL 130
+GKT M E A + NG + G NP + + P GSSSGSA A + ++
Sbjct: 276 LILGKTNMSEWAAGMDEDLPNGYSGKKGQSKNPYSSNLDPSGSSSGSATAATSDFAAIAI 335
Query: 131 GTDTGGSVRVPASYCGIFGFRPSHSAVSTAGVIPMAQSFDTVG 173
GT+T GS+ PAS G++PS V+ G+IP++ FDT G
Sbjct: 336 GTETNGSIITPASAQSAVGYKPSQGLVNNKGIIPLSSRFDTPG 378
>gnl|CDD|180715 PRK06828, PRK06828, amidase; Provisional.
Length = 491
Score = 77.2 bits (190), Expect = 3e-15
Identities = 53/159 (33%), Positives = 73/159 (45%), Gaps = 11/159 (6%)
Query: 27 PLSGLTFAIKDIFDV-DGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDE 85
PL G+ +KD + D T G A ++ A V + GA +GK M E
Sbjct: 79 PLHGIPVLLKDNIETNDSMHTSAGT--IALEQHISSEDAFLVTKLREAGAVILGKANMTE 136
Query: 86 MAYSI-----NGENKHYGTPTNPCAP---DRVPGGSSSGSAVAVGAKLVDFSLGTDTGGS 137
+A + G + G NP D GGSS+GSA+AV A S+GT+T GS
Sbjct: 137 LANFMSFEMWAGYSARGGQTINPYGTGEDDMFVGGSSTGSAIAVAANFTVVSVGTETDGS 196
Query: 138 VRVPASYCGIFGFRPSHSAVSTAGVIPMAQSFDTVGWFA 176
+ PA + G +P+ +S G+IP S DT G FA
Sbjct: 197 ILSPAVQNSVVGIKPTVGLISRRGIIPFTYSQDTAGPFA 235
>gnl|CDD|180626 PRK06565, PRK06565, amidase; Validated.
Length = 566
Score = 62.1 bits (151), Expect = 2e-10
Identities = 47/152 (30%), Positives = 66/152 (43%), Gaps = 11/152 (7%)
Query: 27 PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEM 86
PL G+ + KD + V G G+P A A A + + + GA +GKT M M
Sbjct: 75 PLDGIPYTAKDSYLVKGLTAASGSP--AFKDLVAQRDAFTIERLRAAGAICLGKTNMPPM 132
Query: 87 AYSING--ENKHYGTPTNPCAPDRVPG----GSSSGSAVAVGAKLVDFSLGTDTGGSVRV 140
A NG + YG +P + GSS+G+ A A F L +T S R
Sbjct: 133 A---NGGMQRGVYGRAESPYNAAYLTAPFASGSSNGAGTATAASFSAFGLAEETWSSGRG 189
Query: 141 PASYCGIFGFRPSHSAVSTAGVIPMAQSFDTV 172
PAS G+ + PS +S G P+ + D V
Sbjct: 190 PASNNGLCAYTPSRGVISVRGNWPLTPTMDVV 221
>gnl|CDD|180608 PRK06529, PRK06529, amidase; Provisional.
Length = 482
Score = 57.1 bits (138), Expect = 8e-09
Identities = 37/130 (28%), Positives = 63/130 (48%), Gaps = 5/130 (3%)
Query: 26 LPLSGLTFAIKDIF-DVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMD 84
P +G+ +KD+ ++ G ++ G+ + + T L L G +G++
Sbjct: 61 KPFAGVPIFLKDLGQELKGQLSTSGSRLFKNYQATKTDLYVKRLEDL--GFIILGRSNTP 118
Query: 85 EMAYSINGENKHYGTPTN-PCAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPAS 143
E + N + P N P R GGSS G+A V + +V + +D GGS+R+PAS
Sbjct: 119 EFGFK-NISDSSLHGPVNLPFDNSRNAGGSSGGAAALVSSGIVALAAASDGGGSIRIPAS 177
Query: 144 YCGIFGFRPS 153
+ G+ G +PS
Sbjct: 178 FNGLIGLKPS 187
>gnl|CDD|192864 pfam11886, DUF3406, Domain of unknown function (DUF3406). This
domain is functionally uncharacterized. This domain is
found in eukaryotes. This presumed domain is about 270
amino acids in length. This domain is found associated
with pfam04548.
Length = 275
Score = 32.0 bits (73), Expect = 0.47
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 12/66 (18%)
Query: 73 GGATSIG---KTIMDEMAYSINGENKHYGTPTNPCAPDRVPGGSSS---GSAVAVGAKLV 126
G +TS+G +T+ ++AY++ GE K ++ GG S G VA G KL
Sbjct: 100 GKSTSLGFDIQTVGKDLAYTLRGETK-----FKNFKKNKTTGGLSVTFLGDTVATGVKLE 154
Query: 127 D-FSLG 131
D S+G
Sbjct: 155 DKLSVG 160
>gnl|CDD|237117 PRK12493, PRK12493, magnesium chelatase subunit H; Provisional.
Length = 1310
Score = 31.4 bits (72), Expect = 1.2
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 6/36 (16%)
Query: 267 YSIPSLAALSSAM----RLLQRYEFKNNHGDWVTTV 298
SIP+ AA+++ LL+R + G W T+
Sbjct: 925 QSIPTAAAVAAGKRVVDELLERQ--REEQGAWPETI 958
>gnl|CDD|168574 PRK06484, PRK06484, short chain dehydrogenase; Validated.
Length = 520
Score = 30.6 bits (69), Expect = 1.6
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 41 VDGHVTGFGNPDWARTHSAATSTAPAV-LAVLSGGATSIGKTIMDEMA 87
VDG T +G A T A + A + + ++GGA IG+ + D A
Sbjct: 243 VDGGWTVYGGSGPASTAQAPSPLAESPRVVAITGGARGIGRAVADRFA 290
>gnl|CDD|149935 pfam09039, HTH_Tnp_Mu_2, Mu DNA binding, I gamma subdomain.
Members of this family are responsible for binding the
DNA attachment sites at each end of the Mu genome. They
adopt a secondary structure comprising a four helix
bundle tightly packed around a hydrophobic core
consisting of aliphatic and aromatic amino acid
residues. Helices 1 and 2 are oriented antiparallel to
each other. Helix 3 crosses helices 1 and 2 at angles of
60 and 120 degrees, respectively. Excluding the
C-terminal helix 4, the fold of the I-gamma subdomain is
remarkably similar to that of the homeodomain family of
helix-turn-helix DNA-binding proteins, although their
amino acid sequences are completely unrelated.
Length = 108
Score = 28.7 bits (64), Expect = 2.1
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 245 DYVKDKVPSLQHF---LSEGNKEQEYSIPSLAALSSAM 279
DY++ + P+ L +E ++IPSLA+L
Sbjct: 42 DYLRPEKPTFAACYERLELAAQENGWTIPSLASLKRRF 79
>gnl|CDD|115307 pfam06637, PV-1, PV-1 protein (PLVAP). This family consists of
several PV-1 (PLVAP) proteins which seem to be specific
to mammals. PV-1 is a novel protein component of the
endothelial fenestral and stomatal diaphragms. The
function of this family is unknown.
Length = 442
Score = 30.0 bits (67), Expect = 2.6
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 13/62 (20%)
Query: 309 RVWEAVRTSAQKIDVCQSVKTELRAALSALLGDHGILVIPTVPGPPPKLQMDPSALEVFR 368
R+ A+R SA +D C K+ S +G P PPP +DP++LE F+
Sbjct: 376 RMELAIRISA--LDTCIKAKSLPAMPPSRPMG--------PPPNPPP---IDPASLEEFK 422
Query: 369 AR 370
+
Sbjct: 423 KK 424
>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional.
Length = 1495
Score = 29.6 bits (66), Expect = 3.8
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 168 SFDTVGWFAWDPKILNRVGRVLLQLADDVNLVRPSQVIFAEDCLQLSSIP 217
S DTV +AW+ +R+ + ++++ R +Q++ A + L+SIP
Sbjct: 488 SMDTVKCYAWEKSFESRIQGIR---NEELSWFRKAQLLSAFNSFILNSIP 534
>gnl|CDD|143461 cd07143, ALDH_AldA_AN0554, Aspergillus nidulans aldehyde
dehydrogenase, AldA (AN0554)-like. NAD(P)+-dependent
aldehyde dehydrogenase (AldA) of Aspergillus nidulans
(locus AN0554), and other similar sequences, are present
in this CD.
Length = 481
Score = 29.4 bits (66), Expect = 3.9
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 45 VTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYS 89
V+G+G RT A S+ + V G+T +G+ +M+ A S
Sbjct: 207 VSGYG-----RTCGNAISSHMDIDKVAFTGSTLVGRKVMEAAAKS 246
>gnl|CDD|220990 pfam11124, Pho86, Inorganic phosphate transporter Pho86. Pho86p is
an ER protein which is produced in response to phosphate
starvation. It is essential for growth when phosphate
levels are limiting. Pho86p is also involved in the
regulation of Pho84p, a high-affinity phosphate
transporter which is localised to the endoplasmic
reticulum (ER) in low phosphate medium. When the level
of phosphate increases Pho84p is transported to the
vacuole. Pho86p is required for packaging of Pho84p in
to COPII vesicles.
Length = 296
Score = 29.3 bits (66), Expect = 4.2
Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 7/77 (9%)
Query: 169 FDTVGWFAWDPKILNRVGRVLLQLADDV-----NLVRPS--QVIFAEDCLQLSSIPSDRV 221
F + + +GR+ ++D++ LV+P + IF + +S+P
Sbjct: 99 FQLIYTLPSTSFVFTLLGRLAYLVSDELFKIAIKLVQPKYGEQIFGFNLKDYASLPKSEE 158
Query: 222 TQGLVKSVEKLFGGHII 238
T K E HII
Sbjct: 159 TNKPRKLTENGKNTHII 175
>gnl|CDD|236706 PRK10518, PRK10518, alkaline phosphatase; Provisional.
Length = 476
Score = 28.9 bits (65), Expect = 5.2
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 87 AYSINGENKHYGTPTNPCAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGG 136
A + G+ HY PD V ++S +A + G K + +LG D G
Sbjct: 104 ALPLTGQYTHYALNKKTGKPDYVTDSAASATAWSTGVKTYNGALGVDIHG 153
>gnl|CDD|215410 PLN02766, PLN02766, coniferyl-aldehyde dehydrogenase.
Length = 501
Score = 29.0 bits (65), Expect = 6.3
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 19/82 (23%)
Query: 16 VLQPSSSAHQLPLSGLTFA-------IKD-IFDVDGHVTGFGNPDWARTHSAATSTAPAV 67
V++P A Q PLS L +A + D + +V VTGFG T AA ++ V
Sbjct: 190 VVKP---AEQTPLSALFYAHLAKLAGVPDGVINV---VTGFGP-----TAGAAIASHMDV 238
Query: 68 LAVLSGGATSIGKTIMDEMAYS 89
V G+T +G+ IM A S
Sbjct: 239 DKVSFTGSTEVGRKIMQAAATS 260
>gnl|CDD|236784 PRK10876, recB, exonuclease V subunit beta; Provisional.
Length = 1181
Score = 28.8 bits (65), Expect = 6.5
Identities = 12/42 (28%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 331 LRAALSALLGDHGILVIPTVPGPPPKLQMDPSALEVFRARAF 372
LRA L AL D I + Q ++L AR
Sbjct: 853 LRACLEALCDDD-IALQTAQETDNQPWQPQDASLAELSARTL 893
>gnl|CDD|197333 cd09099, INPP5c_Synj2, Catalytic inositol polyphosphate
5-phosphatase (INPP5c) domain of synaptojanin 2. This
subfamily contains the INPP5c domains of human
synaptojanin 2 (Synj2) and related proteins. It belongs
to a family of Mg2+-dependent inositol polyphosphate
5-phosphatases, which hydrolyze the 5-phosphate from the
inositol ring of various 5-position phosphorylated
phosphoinositides (PIs) and inositol phosphates (IPs),
and to the large EEP
(exonuclease/endonuclease/phosphatase) superfamily that
contains functionally diverse enzymes that share a
common catalytic mechanism of cleaving phosphodiester
bonds. Synj2 can hydrolyze phosphatidylinositol
diphosphate (PIP2) to phosphatidylinositol phosphate
(PIP). In addition to this INPP5c domain, these proteins
contain an N-terminal Sac1-like domain; the Sac1 domain
can dephosphorylate a variety of phosphoinositides in
vitro. Synj2 occurs as multiple alternative splice
variants in various tissues. These variants share the
INPP5c domain and the Sac1 domain. Synj2A is recruited
to the mitochondria via its interaction with OMP25, a
mitochondrial outer membrane protein. Synj2B is found at
nerve terminals in the brain and at the spermatid
manchette in testis. Synj2B undergoes further
alternative splicing to give 2B1 and 2B2. In
clathrin-mediated endocytosis, Synj2 participates in the
formation of clathrin-coated pits, and perhaps also in
vesicle decoating. Rac1 GTPase regulates the
intracellular localization of Synj2 forms, but not
Synj1. Synj2 may contribute to the role of Rac1 in cell
migration and invasion, and is a potential target for
therapeutic intervention in malignant tumors.
Length = 336
Score = 28.4 bits (63), Expect = 6.7
Identities = 23/69 (33%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
Query: 129 SLGTDTGGSVRVPASYCGIFGFRPSHSAVSTAGVIPMAQS---FDTVGWFAWDPKILNRV 185
S DT R PA + +R TAG I + S FDT W P L
Sbjct: 258 SEAYDTSDKCRTPAWTDRVLWWRKKWPFEKTAGEINLLDSDLDFDTKIRHTWTPGALMYY 317
Query: 186 GRVLLQLAD 194
GR LQ +D
Sbjct: 318 GRAELQASD 326
>gnl|CDD|236422 PRK09234, fbiC, FO synthase; Reviewed.
Length = 843
Score = 28.4 bits (64), Expect = 7.9
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 4/31 (12%)
Query: 69 AVLSGGATSIGKTIMDE----MAYSINGENK 95
A+L GGA +G T+M+E MA S +G K
Sbjct: 776 AMLRGGANDLGGTLMEETISRMAGSEHGSAK 806
>gnl|CDD|177622 PHA03386, P10, fibrous body protein; Provisional.
Length = 94
Score = 26.9 bits (59), Expect = 8.2
Identities = 17/87 (19%), Positives = 27/87 (31%), Gaps = 20/87 (22%)
Query: 304 PGISERVWEAVRTSAQKIDVCQSVKTELRA------ALSALLGD--------HGIL---- 345
P + ++ +AV+ K+D Q+ L L A L + IL
Sbjct: 4 PSVLTQILDAVQEVDTKVDALQTQLNGLEEDSQPLDGLPAQLTELDTKVSDIQSILTGDE 63
Query: 346 --VIPTVPGPPPKLQMDPSALEVFRAR 370
P P P ++ R R
Sbjct: 64 VPDPPDPPLPLLPEPEFELDSDIPRGR 90
>gnl|CDD|226132 COG3604, FhlA, Transcriptional regulator containing GAF, AAA-type
ATPase, and DNA binding domains [Transcription / Signal
transduction mechanisms].
Length = 550
Score = 28.5 bits (64), Expect = 9.5
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 248 KDKVPSL-QHFLSEGNKEQEYSIPSLAALSSAMRLLQRYEFKNN 290
+ +P L +FL + + +I SL+A A+ LL YE+ N
Sbjct: 400 PEDIPLLAGYFLEKFRRRLGRAILSLSA--EALELLSSYEWPGN 441
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.134 0.397
Gapped
Lambda K H
0.267 0.0693 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 22,176,059
Number of extensions: 2173383
Number of successful extensions: 2176
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2134
Number of HSP's successfully gapped: 75
Length of query: 431
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 331
Effective length of database: 6,502,202
Effective search space: 2152228862
Effective search space used: 2152228862
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.0 bits)