RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 044294
(431 letters)
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP:
c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A
1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A
Length = 414
Score = 210 bits (537), Expect = 5e-64
Identities = 93/429 (21%), Positives = 164/429 (38%), Gaps = 47/429 (10%)
Query: 1 MASRDSDYGAFMEKFVLQPSSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAA 60
+ +R+ + AF+ + + + PL G+ IKDI D T G+ + +
Sbjct: 29 IEAREKEVHAFV--RHDKSARAQASGPLRGIAVGIKDIIDTANMPTEMGSEIYRGWQPRS 86
Query: 61 TSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPCAPDRVPGGSSSGSAVA 120
+ +L GAT IGKT A NP PGG+SSGSA A
Sbjct: 87 DAPVVMMLK--RAGATIIGKTTTTAFASR------DPTATLNPHNTGHSPGGASSGSAAA 138
Query: 121 VGAKLVDFSLGTDTGGSVRVPASYCGIFGFRPSHSAVSTAGVIPMAQSFDTVGWFAWDPK 180
VGA ++ +LGT TGGSV PA+YCG +PS + T GV + + DTVG F
Sbjct: 139 VGAGMIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGAR-- 196
Query: 181 ILNRVGRVLLQLADDVNLVRPSQVIFAEDCLQLSSIPSD-RVTQGLVKSVEKLFGGHIIE 239
A+D+ + R+ G+V+ F G +
Sbjct: 197 ------------AEDLARG--LLAMTGRSEFSGIVPAKAPRI--GVVRQ---EFAGAVEP 237
Query: 240 NVILGDYVKDKV-PSLQHFLSEGNKEQEYSIPS-LAALSSAMRLLQRYEFKNNHGDWVTT 297
+ + +++ G Q +P + ++Q +E +
Sbjct: 238 A------AEQGLQAAIKAAERAGASVQAIDLPEAVHEAWRIHPIIQDFEAHRALAWEFSE 291
Query: 298 VKPDLGPGISERVWEAVRTSAQKIDVCQSVKTELRAALSALLGDHGILVIPTVPGPPPKL 357
++ P + + V + ++ D + + R L + +L+ + PG P
Sbjct: 292 HHDEIAPMLRASLDATVGLTPKEYDEARRIGRRGRRELGEVFEGVDVLLTYSAPGTAPAK 351
Query: 358 QMDPSALEVFRARAFSLLSIAGVSGFCQVSIPLGLHDNLPVAISLLAKHGSDGFLLNLVE 417
+ + + R ++L+ G V++P+ LP+ + ++A+ G+D L
Sbjct: 352 ALASTGDPRY-NRLWTLM------GNPCVNVPVLKVGGLPIGVQVIARFGNDAHALATAW 404
Query: 418 TLHNTLKEE 426
L + L +
Sbjct: 405 FLEDALAKS 413
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on
protein structural and functional analyses; 2.00A
{Thermus thermophilus}
Length = 434
Score = 187 bits (477), Expect = 6e-55
Identities = 106/410 (25%), Positives = 154/410 (37%), Gaps = 69/410 (16%)
Query: 27 PLSGLTFAIKDIFDVDGHVT--------GFGNPDWARTHSAATSTAPAVLAVLSGGATSI 78
PL GL +KD+F V G T + A L GA
Sbjct: 64 PLHGLPLTVKDLFPVKGMPTRAGTKAPLPP---------LPEEARAVRRLR--EAGALLF 112
Query: 79 GKTIMDEMAYSINGENKHYGTPTNPCAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSV 138
KT M E+A I GEN G N P R GGSS GSAVAV + SLGTDTGGS+
Sbjct: 113 AKTNMHEIALGITGENPWTGPVRNAVDPSRQAGGSSGGSAVAVALGIGLASLGTDTGGSI 172
Query: 139 RVPASYCGIFGFRPSHSAVSTAGVIPMAQSFDTVGWFAWDPKILNRVGRVLLQLADDVNL 198
R+PA + G+ GF+PS+ VS G +P+++S D G
Sbjct: 173 RIPAGFNGVVGFKPSYGRVSLEGALPLSRSTDHAGPLTRS-------------------- 212
Query: 199 VRPSQVIFAEDC-LQLSSI----PSDRVTQGLVKSVEK-LFGGHIIENVILGDYVKDKV- 251
D + Q V V G LG V+
Sbjct: 213 --------VRDAHFLTEILAGESIPLEGVQNPVFGVPLDFLEGR------LGVEVRKAFT 258
Query: 252 PSLQHFLSEGNKEQEYSIPSLAALSSAMRLLQRYEFKNNHGDWVTTVKPDLGPGISERVW 311
L+ + + +E S+P L + L RYE H + P + E +
Sbjct: 259 RLLEDLPALRAEVREVSLP-LEGVYEVYTRLVRYEAARIHEKALKEHPEGFSPQVREALL 317
Query: 312 --EAVRTSAQKIDVCQSVKTELRAALSALLGDHGILVIPTVPGPPPKL---QMDPSALEV 366
A+ T D + + LR L L L++P P P P L +++ +
Sbjct: 318 AGLAL-TEKDYRDA-VAEREALRLELVKALRGVDALLLPVQPLPAPPLGTEEVELESGRK 375
Query: 367 FRARAFSLLSI-AGVSGFCQVSIPLGLHDNLPVAISLLAKHGSDGFLLNL 415
AF L++ + G +++P + +PV + ++ +G DG +L L
Sbjct: 376 GHREAFITLTLPFSLLGVPTLALPFAKVEGMPVGLQVVGAYGEDGKVLAL 425
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB:
3a1i_A
Length = 521
Score = 173 bits (441), Expect = 5e-49
Identities = 100/441 (22%), Positives = 152/441 (34%), Gaps = 88/441 (19%)
Query: 27 PLSGLTFAIKDIFDVDGHVT--------GFGNPDWARTHSAATSTAPAVLAVLSGGATSI 78
L+G AIKD V G GF P A V +L+ GAT
Sbjct: 87 VLTGRRVAIKDNVTVAGVPMMNGSRTVEGF-TPSR---------DATVVTRLLAAGATVA 136
Query: 79 GKTIMDEMAYSINGENKHYGTPTNPCAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSV 138
GK + +++ +S + G NP R GGSS GSA V VDF++G D GGS+
Sbjct: 137 GKAVCEDLCFSGSSFTPASGPVRNPWDRQREAGGSSGGSAALVANGDVDFAIGGDQGGSI 196
Query: 139 RVPASYCGIFGFRPSHSAVSTAGVIPMAQSFDTVGWFAWDPKILNRVGRVLLQLADDVNL 198
R+PA++CG+ G +P+ V G P+ ++ D +G D L
Sbjct: 197 RIPAAFCGVVGHKPTFGLVPYTGAFPIERTIDHLGPITRT--------------VHDAAL 242
Query: 199 VRPSQVIFAEDCL---QLSSIPSDRVTQGLVKSVEKLFGGHIIENVILGDY---VKDKV- 251
+ VI D Q S+ + L V+ L G + E V D V
Sbjct: 243 M--LSVIAGRDGNDPRQADSVEAGDYLSTLDSDVDGLRIGIVREGFGHAVSQPEVDDAVR 300
Query: 252 PSLQHFLSEGNKEQEYSIP----SLAA--------LSSAMRLLQRY----------EFKN 289
+ G +E +IP + + M Y E
Sbjct: 301 AAAHSLTEIGCTVEEVNIPWHLHAFHIWNVIATDGGAYQMLDGNGYGMNAEGLYDPELMA 360
Query: 290 NHGDWVTTVKPDLGPGISERV----------WEAVRTSAQKIDVCQSVKTELRAALSALL 339
+ L + A A+ + RAA L
Sbjct: 361 HFASRRIQHADALSETVKLVALTGHHGITTLGGASYGKARN------LVPLARAAYDTAL 414
Query: 340 GDHGILVIPTVPGPPPKL---QMDPSA--LEVFRARAFSL-LSIAGVSGFCQVSIPLGLH 393
+LV+PT+P +L +D + + A + + G +S+P GL
Sbjct: 415 RQFDVLVMPTLPYVASELPAKDVDRATFITKALGMIANTAPFDVTGHPS---LSVPAGLV 471
Query: 394 DNLPVAISLLAKHGSDGFLLN 414
+ LPV + + +H D +L
Sbjct: 472 NGLPVGMMITGRHFDDATVLR 492
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon
degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A
Length = 493
Score = 149 bits (379), Expect = 2e-40
Identities = 43/146 (29%), Positives = 67/146 (45%), Gaps = 1/146 (0%)
Query: 27 PLSGLTFAIKDIFDV-DGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDE 85
P +G+ + +KD+ V G + + A A V + + G +GKT E
Sbjct: 63 PFAGVPYLLKDLTVVSQGDINTSSIKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPE 122
Query: 86 MAYSINGENKHYGTPTNPCAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYC 145
M + E + +G NP R GGSS GS AV A L + G D G+VR+PAS C
Sbjct: 123 MGNQVTTEPEAWGATRNPWNLGRSVGGSSGGSGAAVAAALSPVAHGNDAAGAVRIPASVC 182
Query: 146 GIFGFRPSHSAVSTAGVIPMAQSFDT 171
G+ G +P+ +S ++ + +
Sbjct: 183 GVVGLKPTRGRISPGPLVTDSDNVAG 208
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH,
oxazole, oxadiazole, endoca degradation, membrane
protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB:
2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A*
2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A*
3qj9_A* 3qkv_A*
Length = 573
Score = 150 bits (380), Expect = 3e-40
Identities = 70/392 (17%), Positives = 139/392 (35%), Gaps = 35/392 (8%)
Query: 27 PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEM 86
L G+ ++K+ F GH + G + S V + GA T + +
Sbjct: 127 LLYGVPVSLKECFSYKGHDSTLGLSLNE--GMPSESDCVVVQVLKLQGAVPFVHTNVPQS 184
Query: 87 AYSINGENKHYGTPTNPCAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYCG 146
+S + N +G NP + PGGSS G +G+ LGTD GGS+R P+++CG
Sbjct: 185 MFSYDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCG 244
Query: 147 IFGFRPSHSAVSTAGVI--------------PMAQSFDTVGWFA---WDPKILNRVGRVL 189
I G +P+ + +S +G+ PMA+ +++ + V
Sbjct: 245 ICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKALLCEHLFTLDPTVP 304
Query: 190 LQLADDVNLVRPSQV---IFAEDCLQLSSIPSDRVTQGLVKSVEKLFG-GHIIENVILGD 245
+ + + D ++PS + + L+++ ++L GH + + +
Sbjct: 305 PLPFREEVYRSSRPLRVGYYETDNY---TMPSPAMRRALIETKQRLEAAGHTLIPFLPNN 361
Query: 246 YVK-DKVPSLQHFLSEGNKEQEYSIPSLAALSSAMRLLQRYEFKNNHGDWVTTVKPDLGP 304
+V S S+G + + L+ + ++ + L P
Sbjct: 362 IPYALEVLSTGGLFSDGGRSFLQNFKGDFVDPCLGDLILILRLPSWFKRLLSLLLKPLFP 421
Query: 305 GISERVWEAVRTSAQKIDVCQSVKTELRAALSALLGDHGILVI--PTVPGPPPKLQMDPS 362
++ + SA+K+ Q R ++ A + V+ P + +
Sbjct: 422 RLAAFLNNMRPRSAEKLWKLQHEIEMYRQSVIAQWKAMNLDVLLTPMLGPALDLNTPGRA 481
Query: 363 ALEVFRARAFSLLSIAGVSGFCQVSIPLGLHD 394
V ++ L F +P+
Sbjct: 482 TGAVSYTMLYNCL------DFPAGVVPVTTVT 507
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double
layers of alpha helices on TOP and bottom, hydrolase;
HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP:
c.117.1.1 PDB: 1m21_A*
Length = 503
Score = 140 bits (354), Expect = 7e-37
Identities = 57/163 (34%), Positives = 76/163 (46%), Gaps = 24/163 (14%)
Query: 27 PLSGLTFAIKDIFDVDGHVT--------GFGNPDWARTHSAATSTAPAVLAVLSGGATSI 78
PL G+ +KD + T GF D A V + GA +
Sbjct: 77 PLHGIPLLLKDNINAAPMATSAGSLALQGFRPDD-----------AYLVRRLRDAGAVVL 125
Query: 79 GKTIMDEMA-----YSINGENKHYGTPTNPCAPDRVPGGSSSGSAVAVGAKLVDFSLGTD 133
GKT + E A SI+G + G NP P GSSSGSAVAV A L ++GT+
Sbjct: 126 GKTNLSEWANFRGNDSISGWSARGGQTRNPYRISHSPCGSSSGSAVAVAANLASVAIGTE 185
Query: 134 TGGSVRVPASYCGIFGFRPSHSAVSTAGVIPMAQSFDTVGWFA 176
T GS+ PA+ G+ G +P+ VS G+IP++ S DT G A
Sbjct: 186 TDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMA 228
Score = 44.9 bits (107), Expect = 4e-05
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 9/72 (12%)
Query: 345 LVIPTVPGPPPKL-QMDPSALEVFRARAFSLLSIAGVSGFCQVSIPLGLHDNLPVAISLL 403
LV PT P + D E + S A V+G+ +++P+G D LPV + +
Sbjct: 413 LVAPTTGVAWPIRSEGDDFPGESY--------SAAAVAGYPSLTVPMGQIDGLPVGLLFM 464
Query: 404 AKHGSDGFLLNL 415
S+ L+ +
Sbjct: 465 GTAWSEPKLIEM 476
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab,
ATP-binding, aminoacyl-tRNA synthetase, ligas
nucleotide-binding, protein biosynthesis, ligase-RNA
comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Length = 471
Score = 138 bits (350), Expect = 2e-36
Identities = 70/189 (37%), Positives = 97/189 (51%), Gaps = 21/189 (11%)
Query: 1 MASRDSDYGAFM---EKFVLQPSSSAHQLPLSGLTFAIKDIFDVDGHVT--------GFG 49
+ D GAF+ E+ + + + LPL+GL A+KD G T F
Sbjct: 28 VQELDPGLGAFLSLNERLLEEAEAVDPGLPLAGLVVAVKDNIATRGLRTTAGSRLLENFV 87
Query: 50 NPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPCAPDRV 109
P +TA A L + GA +GKT +DE + E+ + NP PDRV
Sbjct: 88 PP--------YEATAVARLK--ALGALVLGKTNLDEFGMGSSTEHSAFFPTKNPFDPDRV 137
Query: 110 PGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYCGIFGFRPSHSAVSTAGVIPMAQSF 169
PGGSS GSA A+ A L +LG+DTGGSVR PA++CG++G +P++ VS G+I A S
Sbjct: 138 PGGSSGGSAAALAADLAPLALGSDTGGSVRQPAAFCGVYGLKPTYGRVSRFGLIAYASSL 197
Query: 170 DTVGWFAWD 178
D +G A
Sbjct: 198 DQIGPMARS 206
Score = 42.9 bits (102), Expect = 2e-04
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 8/94 (8%)
Query: 325 QSVKTELRAALSALLGDHGILVIPTVPGPPPKL--QMDPSALEVFRARAFSL-LSIAGVS 381
Q+ + L+A AL + +L++PT P P + DP L ++R +++ ++ G+
Sbjct: 362 QAFRRRLKAEAQALFREVDLLLLPTTPHPAFPFGARRDP--LAMYREDLYTVGANLTGLP 419
Query: 382 GFCQVSIPLGLHDNLPVAISLLAKHGSDGFLLNL 415
+S P G +LPV + LLA G D LL
Sbjct: 420 A---LSFPAGFEGHLPVGLQLLAPWGEDERLLRA 450
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein
complex, ligase, protein biosynthesis; HET: ADP; 2.30A
{Aquifex aeolicus} PDB: 3h0m_A 3h0r_A*
Length = 478
Score = 134 bits (339), Expect = 6e-35
Identities = 59/160 (36%), Positives = 79/160 (49%), Gaps = 18/160 (11%)
Query: 27 PLSGLTFAIKDIFDVDGHVT--------GFGNPDWARTHSAATSTAPAVLAVLSGGATSI 78
PL G+ A+KD V+G T F P +T L GA +
Sbjct: 63 PLFGIPIAVKDNILVEGEKTTCASKILENFVAP--------YDATVIERLK--KAGALIV 112
Query: 79 GKTIMDEMAYSINGENKHYGTPTNPCAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSV 138
GKT +DE A + E + NP +RVPGGSS GSA +V SLG+DTGGS+
Sbjct: 113 GKTNLDEFAMGSSTEYSAFFPTKNPWDLERVPGGSSGGSAASVAVLSAPVSLGSDTGGSI 172
Query: 139 RVPASYCGIFGFRPSHSAVSTAGVIPMAQSFDTVGWFAWD 178
R PAS+CG+ G +P++ VS G++ A S D +G F
Sbjct: 173 RQPASFCGVIGIKPTYGRVSRYGLVAFASSLDQIGVFGRR 212
Score = 39.8 bits (94), Expect = 0.001
Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 9/95 (9%)
Query: 325 QSVKTELRAALSALLGDHGILVIPTVPGPPPKL---QMDPSALEVFRARAFSL-LSIAGV 380
Q V+ + + ++ PT P P K +P +E++ + ++ ++AG+
Sbjct: 372 QKVRRLITNDFLKAFEEVDVIASPTTPTLPFKFGERLENP--IEMYLSDILTVPANLAGL 429
Query: 381 SGFCQVSIPLGLHDNLPVAISLLAKHGSDGFLLNL 415
+SIP+ D LPV L+ KH + LL +
Sbjct: 430 PA---ISIPIAWKDGLPVGGQLIGKHWDETTLLQI 461
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein
complex, ligase, ATP-binding, nucleotide-bindi protein
biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB:
2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A
Length = 485
Score = 134 bits (339), Expect = 6e-35
Identities = 60/160 (37%), Positives = 76/160 (47%), Gaps = 18/160 (11%)
Query: 27 PLSGLTFAIKDIFDVDGHVT--------GFGNPDWARTHSAATSTAPAVLAVLSGGATSI 78
L G+ IKD +G T GF ST L A I
Sbjct: 70 KLFGIPMGIKDNIITNGLETTCASKMLEGFVPI--------YESTVMEKLH--KENAVLI 119
Query: 79 GKTIMDEMAYSINGENKHYGTPTNPCAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSV 138
GK MDE A + E ++ NP VPGGSS GSA AV A LV SLG+DTGGS+
Sbjct: 120 GKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPLSLGSDTGGSI 179
Query: 139 RVPASYCGIFGFRPSHSAVSTAGVIPMAQSFDTVGWFAWD 178
R PA+YCG+ G +P++ VS G++ A S D +G +
Sbjct: 180 RQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRN 219
Score = 39.4 bits (93), Expect = 0.002
Identities = 20/95 (21%), Positives = 43/95 (45%), Gaps = 9/95 (9%)
Query: 325 QSVKTELRAALSALLGDHGILVIPTVPGPPPKL---QMDPSALEVFRARAFSL-LSIAGV 380
Q V+T ++ + ++ ++V PT P L DP L ++ + +++AG+
Sbjct: 379 QKVRTLIKNDFDKVFENYDVVVGPTAPTTAFNLGEEIDDP--LTMYANDLLTTPVNLAGL 436
Query: 381 SGFCQVSIPLGLHDNLPVAISLLAKHGSDGFLLNL 415
G +S+P G + P+ + + K + L +
Sbjct: 437 PG---ISVPCGQSNGRPIGLQFIGKPFDEKTLYRV 468
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural
genomics, joint center for structura genomics, JCSG;
HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP:
c.117.1.1 PDB: 3al0_A*
Length = 476
Score = 133 bits (338), Expect = 8e-35
Identities = 58/187 (31%), Positives = 85/187 (45%), Gaps = 22/187 (11%)
Query: 1 MASRDSDYGAFMEKFVLQPSSSAHQL-PLSGLTFAIKDIFDVDGHVT--------GFGNP 51
+ D AF+ ++ + S + G+ AIKD G T + +
Sbjct: 34 IKRLDPHVKAFI---SVRENVSVEKKGKFWGIPVAIKDNILTLGMRTTCASRILENYESV 90
Query: 52 DWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPCAPDRVPG 111
+T + G +GK +DE A + E + NP +RVPG
Sbjct: 91 --------FDATVVKKMK--EAGFVVVGKANLDEFAMGSSTERSAFFPTRNPWDLERVPG 140
Query: 112 GSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYCGIFGFRPSHSAVSTAGVIPMAQSFDT 171
GSS GSA AV A +V +LG+DTGGSVR PAS CG+ G++P++ VS G++ A S D
Sbjct: 141 GSSGGSAAAVSAGMVVAALGSDTGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQ 200
Query: 172 VGWFAWD 178
+G
Sbjct: 201 IGPITKT 207
Score = 40.6 bits (96), Expect = 8e-04
Identities = 22/94 (23%), Positives = 47/94 (50%), Gaps = 8/94 (8%)
Query: 325 QSVKTELRAALSALLGDHGILVIPTVPGPPPKL--QMDPSALEVFRARAFSL-LSIAGVS 381
V+ ++ L+ +L + ++ PT P K+ DP L + F++ ++AG+
Sbjct: 365 MKVRRKISDELNEVLSQYDAILTPTSPVTAFKIGEIKDP--LTYYLMDIFTIPANLAGLP 422
Query: 382 GFCQVSIPLGLHDNLPVAISLLAKHGSDGFLLNL 415
+S+P G +NLPV + ++ + +DG + +
Sbjct: 423 A---ISVPFGFSNNLPVGVQVIGRRFADGKVFRI 453
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.8 bits (134), Expect = 2e-08
Identities = 53/295 (17%), Positives = 96/295 (32%), Gaps = 94/295 (31%)
Query: 34 AIKDIFD-VDGHVT---GFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTI---MDEM 86
A +D+++ D H GF D P L + GG GK I M
Sbjct: 1641 AAQDVWNRADNHFKDTYGFSILDIVIN-------NPVNLTIHFGGEK--GKRIRENYSAM 1691
Query: 87 AYSINGENKHYGTPTNPCAPDRVPGGSSSGSA----------VAVGAKLVDFSLGTD--T 134
+ + K + + A+ L++ + D +
Sbjct: 1692 IFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPAL--TLMEKAAFEDLKS 1749
Query: 135 GGSVRVPASYCGIFGFRPSHS-----A-VSTAGVIPMAQSFDTVGWFAWDPKILNRVGRV 188
G + A++ G HS A S A V+ + V +++ G
Sbjct: 1750 KGLIPADATFAG-------HSLGEYAALASLADVMSIE---SLV-------EVVFYRGM- 1791
Query: 189 LLQLA---DDVNL-------VRPSQVI--FAEDCLQLSSIPSDRVTQGLVKSVEKLFGGH 236
+Q+A D++ + P +V F+++ LQ +V+ V K G
Sbjct: 1792 TMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQY-----------VVERVGKRTGW- 1839
Query: 237 IIE--N--------VILGDYVKDKVPSLQHFLSEGNKEQEYSIPSLAALSSAMRL 281
++E N V GD + ++ + L+ K Q I + L ++ L
Sbjct: 1840 LVEIVNYNVENQQYVAAGD--LRALDTVTNVLNF-IKLQ--KID-IIELQKSLSL 1888
Score = 38.5 bits (89), Expect = 0.005
Identities = 61/357 (17%), Positives = 105/357 (29%), Gaps = 104/357 (29%)
Query: 5 DSDYGAFMEKFVLQPSSSAHQLPLSGLT-FAIKDIFDVDGHVTGFGNPDWARTHSAATST 63
D DY + P S PL G+ A + V + GF P R++ +
Sbjct: 227 DKDY------LLSIPIS----CPLIGVIQLA---HYVVTAKLLGF-TPGELRSYLKGATG 272
Query: 64 APA--VLAVLSGGATS------IGKTIMDEMAYSINGENKHYGTPTNPCAP----DRVPG 111
V AV S + + + + I G + P P D +
Sbjct: 273 HSQGLVTAVAIAETDSWESFFVSVRKAI-TVLFFI-GVRCYEAYPNTSLPPSILEDSLEN 330
Query: 112 GSSSGSA-VAVGAKLVDFSLGTDTGGSVRVPASYCGIF-GFRPSHSAVSTAGVIPMAQSF 169
S +++ + + Y P+ V + ++ A++
Sbjct: 331 NEGVPSPMLSI------------SNLTQEQVQDYVNKTNSHLPAGKQVEIS-LVNGAKNL 377
Query: 170 DTV--GWFAWDPKILNRVGRVLLQLADDVNLVRPSQVIFAEDCLQLSSIP-SDR----VT 222
V G P+ L + L + A L S IP S+R
Sbjct: 378 --VVSG----PPQSLYGLNLTLRKAK-------------APSGLDQSRIPFSERKLKFSN 418
Query: 223 QGLVKSVEKLFGGHIIENV---ILGDYVKDKVP----SLQ---HFLSEGNKEQEYS---I 269
+ L + F H++ I D VK+ V +Q + +G+ + S
Sbjct: 419 RFLPVASP--FHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSIS 476
Query: 270 PSLAALSSAMRLLQRYEFKNNHGDWVTTVKP------DLGPGISERVWEAVRTSAQK 320
+ + + W TT + D GPG + + V T K
Sbjct: 477 ERIVDCIIRLPV-----------KWETTTQFKATHILDFGPGGASGL--GVLTHRNK 520
Score = 34.6 bits (79), Expect = 0.072
Identities = 49/346 (14%), Positives = 99/346 (28%), Gaps = 124/346 (35%)
Query: 128 FSLGTDTGGSVRVPASYCGIFGFRPSHSAVSTAGVIPMAQSFDTVGWFAWDPKILNRVGR 187
F+ G + + P++ P + + + S P I
Sbjct: 209 FTQGLNILEWLENPSN-------TPDKDYLLSIPI-----SC---------PLI------ 241
Query: 188 VLLQLADDVNLVRPSQVIFAEDCLQLSSIPSD--RVTQGLVKSVEKLFGGHIIENVILGD 245
++QLA + L P + +G GH
Sbjct: 242 GVIQLAH-----------YVVTAKLLGFTPGELRSYLKGAT--------GH--------- 273
Query: 246 YVKDKVPSLQHFLSEGNKEQEYSIPSLAALSSAMRLLQRYEFKNNHGDWV------TTVK 299
+ V ++ ++E + + + ++ A+ +L F ++
Sbjct: 274 -SQGLVTAV--AIAETDSWESF----FVSVRKAITVL----F------FIGVRCYEAYPN 316
Query: 300 PDLGPGISERVWE----------AVR--TSAQ---KID-VCQSVKTELRAALSALLGDHG 343
L P I E E ++ T Q ++ + + +S
Sbjct: 317 TSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEIS------- 369
Query: 344 ILVI-PT---VPGPPPKLQMDPSALEVFRARA--------FSLLSIAGVSGFCQVSIPLG 391
LV V GPP L L +A + FS + + F V+ P
Sbjct: 370 -LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASP-- 426
Query: 392 LHDNL--PVAISLLAKHGSDGFLLN---LVETLHNTLK-EELQRMS 431
H +L P + + + N + +++T +L+ +S
Sbjct: 427 FHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLS 472
Score = 28.9 bits (64), Expect = 4.3
Identities = 28/199 (14%), Positives = 55/199 (27%), Gaps = 52/199 (26%)
Query: 253 SLQHF-LSEGNKEQEYSIPSLAALSSAMRLLQRYEFKNNHGDWVTTVKPDLGPG------ 305
S + LS G+ E +P+ A+ A +L + +F + D P
Sbjct: 5 STRPLTLSHGSLEHVLLVPT-ASFFIASQL--QEQFNKILPEPTEGFAADDEPTTPAELV 61
Query: 306 ------ISERVWEAVRTSAQKIDVCQSVKTELRAALSALLGDHGI-LVIPTVPGPPPKLQ 358
+S V + ++ + L + L + I + +
Sbjct: 62 GKFLGYVSSLVEPSKVGQFDQV-----LNLCLTEFENCYLEGNDIHALAAKLLQENDTTL 116
Query: 359 MDPSALEVFRARAFSLLSIAGVSGFCQVSIPLGLHDNLPVAISLLAKHGSDG----FLL- 413
E+ + + +A P N S L + +G +
Sbjct: 117 --VKTKELIKN-YITARIMAK--------RPFDKKSN-----SALFRAVGEGNAQLVAIF 160
Query: 414 ----NLVETLHNTLKEELQ 428
N + EEL+
Sbjct: 161 GGQGNTDDYF-----EELR 174
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.5 bits (117), Expect = 2e-06
Identities = 30/205 (14%), Positives = 59/205 (28%), Gaps = 52/205 (25%)
Query: 170 DTVGWFAWDPKILNRVG---RVLLQLADDVNLVRPSQVIFAEDCLQLSSIPSDRVTQGLV 226
V + K N ++LL R QV + I D + L
Sbjct: 251 LNV----QNAKAWNAFNLSCKILL-------TTRFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 227 KS-VEKLFG---GHIIENV-------------ILGDYVKDKVPSLQHFLSEGNKEQEYSI 269
V+ L +++ I+ + ++D + + ++ + I
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359
Query: 270 -PSLAALSSA-MRLLQRYE----FKNNHGDWVTTVK-PDLGPGISERVWEAVRTSAQKID 322
SL L A R + ++ F + P + +W V S +
Sbjct: 360 ESSLNVLEPAEYR--KMFDRLSVFPPS-------AHIP---TILLSLIWFDVIKSDVMVV 407
Query: 323 VCQSVKTEL--RAALSALLGDHGIL 345
V + K L + + + I
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIY 432
Score = 43.7 bits (102), Expect = 1e-04
Identities = 37/278 (13%), Positives = 80/278 (28%), Gaps = 65/278 (23%)
Query: 191 QLADDVNLVRPSQVIFAEDCL-QLSSIPSDRVT-QGLV---KSVEKLFGGHIIENVILGD 245
Q+ N+ R + L +L P+ V G++ K+ + +V L
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELR--PAKNVLIDGVLGSGKTW-------VALDVCLSY 174
Query: 246 YVKDKVPSLQHFLSEGNKEQEYSIPS-LAALSSAMR--LLQRYEFKNN---HGDWVTTVK 299
V+ K+ +L+ N ++ L L + R + +N +
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 300 PDLGPGISER-----------VWEAVRTSAQKIDV-CQSVKTELRAALSALLGDHGILVI 347
L + + V A + ++ C+ + T ++ L I
Sbjct: 235 RRL---LKSKPYENCLLVLLNVQNA--KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI 289
Query: 348 PTVPGPPPKLQMDPS-ALEVFRARAFSLLSIAGVSGFCQVSIPLGLHDNLPVAISLLAKH 406
+ P + L +P + P +S++A+
Sbjct: 290 SLDHHSMT---LTPDEVKSLL-------LKYLDCRPQ---DLPREVLTTNPRRLSIIAES 336
Query: 407 GSDG------FLLNLVETLHNTLK--------EELQRM 430
DG + + L ++ E ++M
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374
>2iqt_A Fructose-bisphosphate aldolase class 1; TIM berrel, structural
genomics, PSI-2; 2.46A {Porphyromonas gingivalis}
Length = 296
Score = 36.5 bits (85), Expect = 0.011
Identities = 12/100 (12%), Positives = 31/100 (31%), Gaps = 15/100 (15%)
Query: 267 YSIPSLAALSSAMRLLQRYEFKNNHGDWVTTVKPDLGPGISERVWEAVRTSAQKIDVCQS 326
+ + + ++ + V ++P E +K +
Sbjct: 147 IKQANEQGIRDIVEQQFQWGKEILSHGLVPILEP-----------EVDIHCPEKAKAEEI 195
Query: 327 VKTELRAALSALLGDHGILVIPTVPGPP--PKLQMDPSAL 364
+K EL A L + +++ T+P K ++ +
Sbjct: 196 LKRELLAQLDKMT--EPVMLKITIPTVDNFYKEIIEHPMM 233
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein;
2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Length = 149
Score = 34.1 bits (78), Expect = 0.029
Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 10/91 (10%)
Query: 281 LLQRYEFKNNHGDWVTTVKPDLGPG--ISERVWEAVRTSAQKIDVC-----QS--VKTEL 331
++Q E N + K D G I + + +++ S + + V +S K EL
Sbjct: 24 MVQELE-NFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXKYEL 82
Query: 332 RAALSALLGDHGILVIPTVPGPPPKLQMDPS 362
+ L ++ I + P K +
Sbjct: 83 DFSHFRLFDENNDAAILILLEPIEKKAIPQR 113
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity,
immune response, leucine-rich repeat, glycoprotein,
transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Length = 178
Score = 34.5 bits (79), Expect = 0.031
Identities = 14/92 (15%), Positives = 25/92 (27%), Gaps = 15/92 (16%)
Query: 283 QRYEFKNNHGDWVTTVKPDLGPG--ISERVWEAVRTSAQKIDVCQS-------VKTELRA 333
+ + PG ISE + + S + I V E
Sbjct: 61 EDGSILICLYES------YFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEWCHYEFYF 114
Query: 334 ALSALLGDHGILVIPTVPGPPPKLQMDPSALE 365
A L ++ +I + P P + +
Sbjct: 115 AHHNLFHENSDHIILILLEPIPFYCIPTRYHK 146
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 34.3 bits (78), Expect = 0.057
Identities = 24/165 (14%), Positives = 46/165 (27%), Gaps = 41/165 (24%)
Query: 147 IFG---FRPSHSAVSTAGVIPMAQS---------FDTVGWF---AWDPKILNRVGRVLLQ 191
I F + + +Q DT F + V R L
Sbjct: 42 ILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYLL 101
Query: 192 LADDVNLVRPSQVIFAEDCLQLSSIPSDRVTQGLVKSVEKLFGGHIIENVIL----GDYV 247
A +++ L Q + V+++FG + + I+ + +
Sbjct: 102 SAPGPHVL----------LLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDL 151
Query: 248 KDKVPSLQHFLSEGNKEQEYSIPSLAALSSAMRLLQ-RYEFKNNH 291
SL ++ + + + ALS + R NN
Sbjct: 152 NGG--SLMDYMHDSDNK---------ALSKLVAACGGRICAFNNR 185
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.11
Identities = 8/56 (14%), Positives = 20/56 (35%), Gaps = 26/56 (46%)
Query: 264 EQEYSIPSLAALSSAMRLLQRYEFKNNHGDWVTTVKPDLGPGISERVWEAVRTSAQ 319
E++ +L L ++++L Y D P + A++ + +
Sbjct: 18 EKQ----ALKKLQASLKL---YA-------------DDSAPAL------AIKATME 47
Score = 32.2 bits (72), Expect = 0.14
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 18/46 (39%)
Query: 80 KTIMDEMAYSINGENKHYGTPTNPCAPDRVPGGSSSGSAVAVGAKL 125
K + ++ S+ K Y A D P A+A+ A +
Sbjct: 19 KQALKKLQASL----KLY-------ADDSAP-------ALAIKATM 46
Score = 30.3 bits (67), Expect = 0.75
Identities = 7/28 (25%), Positives = 13/28 (46%), Gaps = 7/28 (25%)
Query: 227 KSVEKLFGGHIIENVILGDYVKDKVPSL 254
++++KL + L Y D P+L
Sbjct: 20 QALKKL------QAS-LKLYADDSAPAL 40
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 31.9 bits (72), Expect = 0.29
Identities = 20/105 (19%), Positives = 38/105 (36%), Gaps = 25/105 (23%)
Query: 170 DTVGWF---AWDPKILNRVGRVLLQLADDVNLVRPSQVIFAEDCLQLSSIPSDRVTQ--- 223
DT G F + + + R +L + + + L +P R T+
Sbjct: 84 DTPGIFDTEVPNAETSKEIIRCILLTSPGPHAL-------------LLVVPLGRYTEEEH 130
Query: 224 GLVKSVEKLFGGHIIENVIL----GDYVKDKVPSLQHFLSEGNKE 264
+ + K+FG +IL D + D +L +L E ++
Sbjct: 131 KATEKILKMFGERARSFMILIFTRKDDLGDT--NLHDYLREAPED 173
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR
domain, TLRS adaptor, immune system; 2.40A {Homo
sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Length = 146
Score = 29.3 bits (66), Expect = 1.2
Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 11/70 (15%)
Query: 301 DLGPG--ISERVWEAVRTSAQKIDVC-----QS--VKTELRAALSALLGDHGILVIPTVP 351
D PG I + +A+ +S ++ + Q K ++ AL+ G G + +
Sbjct: 47 DATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCKYQMLQALTEAPGAEGCTIP--LL 104
Query: 352 GPPPKLQMDP 361
+ P
Sbjct: 105 SGLSRAAYPP 114
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+
ATPase, response regulator, transcriptional activator,
ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB:
1zit_A 2jrl_A
Length = 368
Score = 30.1 bits (69), Expect = 1.2
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 248 KDKVPSL-QHFLSEGNKEQEYSIPSLAALSSAMRLLQRYEFKNN 290
V L ++FL + KE + + L+ L + E+K N
Sbjct: 305 GKDVILLAEYFLKKFAKEYKKNCFELS--EETKEYLMKQEWKGN 346
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54
activator, bacterial transcription, DIM transcription;
HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1
c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Length = 387
Score = 30.1 bits (69), Expect = 1.5
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 248 KDKVPSL-QHFLSEGNKEQEYSIPSLAALSSAMRLLQRYEFKNN 290
K+ + L HFL + +++ + SA LL Y + N
Sbjct: 314 KEDIIPLANHFLKKFSRKYAKEVEGFT--KSAQELLLSYPWYGN 355
>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A
{Human herpesvirus 1} PDB: 1dml_B*
Length = 1193
Score = 30.2 bits (67), Expect = 1.5
Identities = 14/116 (12%), Positives = 34/116 (29%), Gaps = 15/116 (12%)
Query: 180 KILNRVGRVLLQLAD-DVNLVRPSQVIFAEDCLQLSSIPSDRVTQGLVKSVEKLFGGHII 238
+ + +L ++ E + LV + ++
Sbjct: 926 RTSRALVDLLFYDDTVSGAAAALAERPAEEWLARPLPEGLQAFGAVLVDAHRRITDP--- 982
Query: 239 ENVILGDYVKDKVPSLQHFLSEGNKE-QEYSIPSLAALSSAMRLLQRYEFKNNHGD 293
+ D+V +E ++ + Y+ LA L+ +L+ R + D
Sbjct: 983 -ERDIQDFV---------LTAELSRHPRAYTNKRLAHLTVYYKLMARRAQVPSIKD 1028
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET:
GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Length = 270
Score = 29.5 bits (66), Expect = 1.8
Identities = 19/116 (16%), Positives = 36/116 (31%), Gaps = 28/116 (24%)
Query: 169 FDTVGWF---AWDPKILNRVGRVLLQLADDVNLVRPSQVIFAEDCLQLSSIPSDRVTQGL 225
DT G + LN + LL DV L +L + D + + +
Sbjct: 92 IDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLY----------VDRLDAYRVDNLDKLV 141
Query: 226 VKSVEKLFGGHIIENVIL---------------GDYVKDKVPSLQHFLSEGNKEQE 266
K++ FG I I+ ++ + +L + G ++
Sbjct: 142 AKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSKRSEALLQVVRSGASLKK 197
>2r17_C Vacuolar protein sorting-associated protein 35; protein transport,
membrane, phosphorylation; 2.80A {Homo sapiens}
Length = 298
Score = 29.5 bits (66), Expect = 2.0
Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Query: 236 HIIENVILGDYVKDKVPSLQHFLSEGNKEQEYSIPSLAALSSAMRLLQRY-EFKNNHGDW 294
H++ + + +HF + GN+ +++P L + +A +L RY E W
Sbjct: 14 HLLRSEDPDQQYLILNTARKHFGAGGNQRIRFTLPPL--VFAAYQLAFRYKENSKVDDKW 71
Query: 295 VTTVK 299
+
Sbjct: 72 EKKCQ 76
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA
replication, DNA-BI DNA-directed DNA polymerase,
exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A
{Saccharomyces cerevisiae}
Length = 919
Score = 29.5 bits (66), Expect = 2.6
Identities = 16/106 (15%), Positives = 35/106 (33%), Gaps = 12/106 (11%)
Query: 227 KSVEKLFGGHIIENVILGDYVKDKV-------PSLQHFLSEGNKEQEYSIPSLAALSSAM 279
K ++K+ ++ + +V++ + + + Y+ P A
Sbjct: 786 KVLKKILIERNVDGAL--AFVRETINDILHNRVDISKLIISKTLAPNYTNP-QPHAVLAE 842
Query: 280 RLLQRYEFKNNHGDWVTTVKPDLGPGISERVW--EAVRTSAQKIDV 323
R+ +R N GD V V + R V + ++D
Sbjct: 843 RMKRREGVGPNVGDRVDYVIIGGNDKLYNRAEDPLFVLENNIQVDS 888
>1nx8_A CARC, carbapenem synthase; jelly roll, unknown function; HET: AKG
N7P; 2.30A {Pectobacterium carotovorum} SCOP: b.82.2.8
PDB: 1nx4_A*
Length = 273
Score = 27.7 bits (62), Expect = 7.8
Identities = 9/78 (11%), Positives = 20/78 (25%), Gaps = 20/78 (25%)
Query: 295 VTTVKPDLGPGISERVWEAVRTSAQKIDVCQSVKTELRAALSALLGDHGILVIPTVPGPP 354
+ P + G + D ++ ++ L G +V+
Sbjct: 4 IVKFNPVMASGFGAYI--------DHRDFLEAKTETIKNLLM----RQGFVVV------- 44
Query: 355 PKLQMDPSALEVFRARAF 372
L +D A+
Sbjct: 45 KNLDIDSDTFRDI-YSAY 61
>1bdg_A Hexokinase; phosphotransferase; HET: GLC; 2.60A {Schistosoma
mansoni} SCOP: c.55.1.3 c.55.1.3
Length = 451
Score = 27.6 bits (61), Expect = 8.0
Identities = 24/107 (22%), Positives = 35/107 (32%), Gaps = 6/107 (5%)
Query: 329 TELRAALSALLGDHGILVIPTVPGPPPKLQMDPSALEVFRARAFSLLSIAGVSGFCQVSI 388
T R L G I P +M S E+F+ A +L +G
Sbjct: 78 TNYRVLSVTLEGKGKSPRIQERTYCIPAEKMSGSGTELFKYIAETLADFLENNGMKDKKF 137
Query: 389 PLGLHDNLPVAISLLAK----HGSDGFLLNLVE--TLHNTLKEELQR 429
LG + P L + GF + VE + L+ EL +
Sbjct: 138 DLGFTFSFPCVQKGLTHATLVRWTKGFSADGVEGHNVAELLQTELDK 184
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.397
Gapped
Lambda K H
0.267 0.0695 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,663,713
Number of extensions: 414590
Number of successful extensions: 1008
Number of sequences better than 10.0: 1
Number of HSP's gapped: 980
Number of HSP's successfully gapped: 51
Length of query: 431
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 335
Effective length of database: 4,021,377
Effective search space: 1347161295
Effective search space used: 1347161295
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.6 bits)