RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 044294
(431 letters)
>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase
subunit A {Thermotoga maritima [TaxId: 2336]}
Length = 475
Score = 189 bits (480), Expect = 1e-55
Identities = 94/400 (23%), Positives = 169/400 (42%), Gaps = 15/400 (3%)
Query: 27 PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEM 86
G+ AIKD G T + + + A V + G +GK +DE
Sbjct: 57 KFWGIPVAIKDNILTLGMRTTCASRILE--NYESVFDATVVKKMKEAGFVVVGKANLDEF 114
Query: 87 AYSINGENKHYGTPTNPCAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYCG 146
A + E + NP +RVPGGSS GSA AV A +V +LG+DTGGSVR PAS CG
Sbjct: 115 AMGSSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGMVVAALGSDTGGSVRQPASLCG 174
Query: 147 IFGFRPSHSAVSTAGVIPMAQSFDTVGWFAWDPKILNRVGRVLLQLADDVNLVRPSQVIF 206
+ G++P++ VS G++ A S D +G + + ++ ++ +V F
Sbjct: 175 VVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEIISGRDENDATTVNRKVDF 234
Query: 207 AEDCLQLSS-----IPSDRVTQGLVKSVEKLFGGHIIENVILGDYVKD-KVPSLQHFLSE 260
+ + S +P + + + V + F + LG V+ K+P +++ ++
Sbjct: 235 LSEIEEGVSGMKFAVPEEIYEHDIEEGVSERFEEALKLLERLGAKVERVKIPHIKYSVAT 294
Query: 261 GNKEQEYSIPSLAALSSAMRLLQRYEFKNNHGDWVTTVKPDLGPGISERVWEAVRTSAQK 320
S A ++ R + K ++ T G + R+ T +
Sbjct: 295 YYVIAPAEASSNLARFDGVKYGLRIKEKGLREMYMKTRNVGFGEEVRRRIMIGTFTLSAA 354
Query: 321 I-----DVCQSVKTELRAALSALLGDHGILVIPTVPGPPPKLQMDPSALEVFRARAFSLL 375
+ V+ ++ L+ +L + ++ PT P K+ L + F+
Sbjct: 355 YYEAYFNKAMKVRRKISDELNEVLSQYDAILTPTSPVTAFKIGEIKDPLTYYLMDIFT-- 412
Query: 376 SIAGVSGFCQVSIPLGLHDNLPVAISLLAKHGSDGFLLNL 415
A ++G +S+P G +NLPV + ++ + +DG + +
Sbjct: 413 IPANLAGLPAISVPFGFSNNLPVGVQVIGRRFADGKVFRI 452
>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase
subunit A {Staphylococcus aureus [TaxId: 1280]}
Length = 485
Score = 186 bits (472), Expect = 2e-54
Identities = 90/410 (21%), Positives = 156/410 (38%), Gaps = 32/410 (7%)
Query: 27 PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEM 86
L G+ IKD +G T + ST L A IGK MDE
Sbjct: 70 KLFGIPMGIKDNIITNGLETTCASKMLEGFVPIYESTVMEKLHKE--NAVLIGKLNMDEF 127
Query: 87 AYSINGENKHYGTPTNPCAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYCG 146
A + E ++ NP VPGGSS GSA AV A LV SLG+DTGGS+R PA+YCG
Sbjct: 128 AMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPLSLGSDTGGSIRQPAAYCG 187
Query: 147 IFGFRPSHSAVSTAGVIPMAQSFDTVGWFAWDPKILNRVGRVLLQLADDVNLVRPSQVIF 206
+ G +P++ VS G++ A S D +G + K V + + + P +
Sbjct: 188 VVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGADVNDSTSAPVDDVD 247
Query: 207 AEDCLQLS------SIPSDRVTQGLVKSVEKLFG---------GHIIENVILGDYVKDKV 251
+ ++P + + +G+ V++ G ++E V L +
Sbjct: 248 FTSEIGKDIKGLKVALPKEYLGEGVADDVKEAVQNAVETLKSLGAVVEEVSLPNTKFGIP 307
Query: 252 PSLQHFLSEGNKEQEYSIPSLAALSSAMRLLQRYEFKNNHGDWVTTVKPDLGPGISERVW 311
SE + +L+ E + + + G + R++
Sbjct: 308 SYYVIASSEASS-------NLSRFDGIRYGYHSKEAHSLEELYKMSRSEGFGKEVKRRIF 360
Query: 312 EAVRTSAQKID-----VCQSVKTELRAALSALLGDHGILVIPTVPGPPPKL-QMDPSALE 365
+ Q V+T ++ + ++ ++V PT P L + L
Sbjct: 361 LGTFALSSGYYDAYYKKSQKVRTLIKNDFDKVFENYDVVVGPTAPTTAFNLGEEIDDPLT 420
Query: 366 VFRARAFSLLSIAGVSGFCQVSIPLGLHDNLPVAISLLAKHGSDGFLLNL 415
++ + + ++G +S+P G + P+ + + K + L +
Sbjct: 421 MYANDLLT--TPVNLAGLPGISVPCGQSNGRPIGLQFIGKPFDEKTLYRV 468
>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas
maltophilia [TaxId: 40324]}
Length = 490
Score = 118 bits (295), Expect = 1e-29
Identities = 98/421 (23%), Positives = 150/421 (35%), Gaps = 53/421 (12%)
Query: 27 PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEM 86
PL G+ +KD + T G+ A V + GA +GKT + E
Sbjct: 73 PLHGIPLLLKDNINAAPMATSAGSLAL---QGFRPDDAYLVRRLRDAGAVVLGKTNLSEW 129
Query: 87 A-----YSINGENKHYGTPTNPCAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVP 141
A SI+G + G NP P GSSSGSAVAV A L ++GT+T GS+ P
Sbjct: 130 ANFRGNDSISGWSARGGQTRNPYRISHSPCGSSSGSAVAVAANLASVAIGTETDGSIVCP 189
Query: 142 ASYCGIFGFRPSHSAVSTAGVIPMAQSFDTVGWFAWDPKILNRVGRVLLQLADDVNLVRP 201
A+ G+ G +P+ VS G+IP++ S DT G A V + D
Sbjct: 190 AAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLTAIAGRDDADPATAT 249
Query: 202 SQVIFAEDCLQLSSIPSDRVTQGLVKSVEKLFGGHIIENVILGDYVKDKVPSLQHFLSEG 261
D + + + G + ++ + + L
Sbjct: 250 MPGRAVYDYTA----------RLDPQGLRGKRIGLLQTPLLKYRGMPPLIEQAATELRRA 299
Query: 262 NKEQE-YSIPSLAALSSAMRLLQRYEFKNNHGDWVTTVKPDL------------------ 302
+P+ A + A R L YEFK + T + L
Sbjct: 300 GAVVVPVELPNQGAWAEAERTLLLYEFKAGLERYFNTHRAPLRSLADLIAFNQAHSKQEL 359
Query: 303 GPGISERVWEAVRTSAQKIDVCQSV-----KTELRAALSALLGDHGI--LVIPTVPGPPP 355
G E + EA T+ + + A L H + LV PT P
Sbjct: 360 GLFGQELLVEADATAGLADPAYIRARSDARRLAGPEGIDAALAAHQLDALVAPTTGVAWP 419
Query: 356 KL-QMDPSALEVFRARAFSLLSIAGVSGFCQVSIPLGLHDNLPVAISLLAKHGSDGFLLN 414
+ D E + S A V+G+ +++P+G D LPV + + S+ L+
Sbjct: 420 IRSEGDDFPGESY--------SAAAVAGYPSLTVPMGQIDGLPVGLLFMGTAWSEPKLIE 471
Query: 415 L 415
+
Sbjct: 472 M 472
>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum
[TaxId: 375]}
Length = 412
Score = 107 bits (267), Expect = 3e-26
Identities = 86/397 (21%), Positives = 141/397 (35%), Gaps = 39/397 (9%)
Query: 27 PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEM 86
PL G+ IKDI D T G+ + S AP V+ + GAT IGKT
Sbjct: 53 PLRGIAVGIKDIIDTANMPTEMGSEIYR--GWQPRSDAPVVMMLKRAGATIIGKTTTTAF 110
Query: 87 AYSINGENKHYGTPTNPCAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYCG 146
A NP PGGSSSGSA AVGA ++ +LGT TGGSV PA+YCG
Sbjct: 111 ASR------DPTATLNPHNTGHSPGGSSSGSAAAVGAGMIPLALGTQTGGSVIRPAAYCG 164
Query: 147 IFGFRPSHSAVSTAGVIPMAQSFDTVGWFAWDPKILNRVGRVLLQLADDVNLVRPSQVIF 206
+PS + T GV + + DTVG F + L R + ++ +V
Sbjct: 165 TAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRSEFSGIVPAKAPRI 224
Query: 207 AEDCLQLSSIPSDRVTQGLVKSVEKLFGGHIIENVILGDYVKDKVPSLQHFLSEGNKEQE 266
++ G + + +
Sbjct: 225 GVVR-------------------QEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDLPEA 265
Query: 267 YSIPSLAALSSAMRLLQRYEFKNNHGDWVTTVKPDLGPGISERVWEAVRTSAQKIDVCQS 326
++Q +E + ++ P + + V + ++ D +
Sbjct: 266 VHEAWR-----IHPIIQDFEAHRALAWEFSEHHDEIAPMLRASLDATVGLTPKEYDEARR 320
Query: 327 VKTELRAALSALLGDHGILVIPTVPGPPPKLQMDPSALEVFRARAFSLLSIAGVSGFCQV 386
+ R L + +L+ + PG P + + + + + G V
Sbjct: 321 IGRRGRRELGEVFEGVDVLLTYSAPGTAPAKALASTGDPRYNR-------LWTLMGNPCV 373
Query: 387 SIPLGLHDNLPVAISLLAKHGSDGFLLNLVETLHNTL 423
++P+ LP+ + ++A+ G+D L L + L
Sbjct: 374 NVPVLKVGGLPIGVQVIARFGNDAHALATAWFLEDAL 410
>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide
hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 537
Score = 102 bits (253), Expect = 5e-24
Identities = 75/473 (15%), Positives = 142/473 (30%), Gaps = 62/473 (13%)
Query: 1 MASRDSDYGAFMEKFV---LQPSSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTH 57
+ Q S + Q L G+ ++K+ F GH + G
Sbjct: 68 AWEVNKGTNCVTSYLTDCETQLSQAPRQGLLYGVPVSLKECFSYKGHDSTLGLSLNE--G 125
Query: 58 SAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPCAPDRVPGGSSSGS 117
+ S V + GA T + + S + N +G NP + PGGSS G
Sbjct: 126 MPSESDCVVVQVLKLQGAVPFVHTNVPQSMLSFDCSNPLFGQTMNPWKSSKSPGGSSGGE 185
Query: 118 AVAVGAKLVDFSLGTDTGGSVRVPASYCGIFGFRPSHSAVSTAGVIP----MAQSFDTVG 173
+G+ LGTD GGS+R P+++CGI G +P+ + +S +G+ ++G
Sbjct: 186 GALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLG 245
Query: 174 WFAWDPKILNRV-----GRVLLQLADDVNLVRPSQVIFAEDCLQLSSIPSDRVTQGLVKS 228
A D + L L L V + + ++ +
Sbjct: 246 PMARDVESLALCLKALLCEHLFTLDPTVPPLPFREEVYRSSRPLRVGYYETDNYTMPSPA 305
Query: 229 VEKLFGGHIIENVILGDYVKDKVP----------SLQHFLSEGNKEQEYSIPSLAALSSA 278
+ + G + +P S S+G + +
Sbjct: 306 MRRALIETKQRLEAAGHTLIPFLPNNIPYALEVLSAGGLFSDGGRSFLQNFKGDFVDPCL 365
Query: 279 MRLLQRYEFKNNHGDWVTTVKPDLGPGISERVWEAVRTSAQKIDVCQSVKTELRAALSAL 338
L+ + ++ + L P ++ + SA+K+ Q R ++ A
Sbjct: 366 GDLILILRLPSWFKRLLSLLLKPLFPRLAAFLNSMRPRSAEKLWKLQHEIEMYRQSVIAQ 425
Query: 339 LGDHGILVI--PTVPGPPPKLQMDPSALEVFRARAFSLLSIAGVSGFCQVSIPLGLHD-- 394
+ V+ P + + + ++ L F +P+
Sbjct: 426 WKAMNLDVLLTPMLGPALDLNTPGRATGAISYTVLYNCL------DFPAGVVPVTTVTAE 479
Query: 395 ----------------------------NLPVAISLLAKHGSDGFLLNLVETL 419
LPVA+ +A + L + +
Sbjct: 480 DDAQMELYKGYFGDIWDIILKKAMKNSVGLPVAVQCVALPWQEELCLRFMREV 532
>d1bgca_ a.26.1.1 (A:) Granulocyte-colony stimulating factor (G-CSF)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 165
Score = 29.4 bits (66), Expect = 0.49
Identities = 16/163 (9%), Positives = 39/163 (23%), Gaps = 53/163 (32%)
Query: 180 KILNRVGRVLLQLADDVNLVRPSQVIFAEDCLQLSSIPSD--------------RVTQGL 225
KI + +L L P +++ L + P ++ GL
Sbjct: 16 KIQADGAELQERLCAAHKLCHPEELMLLRHSLGIPQAPLSSCSSQSLQLRGCLNQLHGGL 75
Query: 226 V------KSVEKLFGGHIIENVILGDYVKDKVPSLQHFLSEGNKEQEYSIPSLAALSSAM 279
+++ + + +LQ + ++ +
Sbjct: 76 FLYQGLLQALAGISPEL-----------APTLDTLQL--------------DVTDFATNI 110
Query: 280 RLLQRYEFKNNHGDWVTTVKPDLGPGI-SERVWEAVRTSAQKI 321
L + V+P G ++ R +
Sbjct: 111 WL------QMEDLGAAPAVQPTQGAMPTFTSAFQ-RRAGGVLV 146
>d1cf5a_ d.165.1.1 (A:) Beta-momorcharin {Bitter gourd (Momordica
charantia) [TaxId: 3673]}
Length = 249
Score = 28.0 bits (62), Expect = 2.1
Identities = 4/28 (14%), Positives = 10/28 (35%)
Query: 329 TELRAALSALLGDHGILVIPTVPGPPPK 356
+ RA L + I ++ + +
Sbjct: 19 EDFRATLPFSHKVYDIPLLYSTISDSRR 46
>d2v7fa1 a.4.5.84 (A:2-150) Ribosomal protein S19e {Pyrococcus
abyssi [TaxId: 29292]}
Length = 149
Score = 27.4 bits (61), Expect = 2.4
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 5/42 (11%)
Query: 149 GFRPSHSAVSTAGVIPMA-QSFDTVGWFAWDPKILNRVGRVL 189
G P + +I A Q + G+ P GRV+
Sbjct: 83 GHAPERFYKAGGSIIRKALQQLEAAGFVEKVPGK----GRVI 120
>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin
hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii
[TaxId: 2190]}
Length = 242
Score = 27.2 bits (60), Expect = 3.1
Identities = 11/69 (15%), Positives = 21/69 (30%), Gaps = 5/69 (7%)
Query: 290 NHGDWVTTVKPDLGPGISERVWEAVRTSAQK---IDVCQSVKTELRAALSALLGDHGILV 346
D V T P + + + + + ++ T A + LG + +
Sbjct: 140 EGADIVITWLPK--GNKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLNI 197
Query: 347 IPTVPGPPP 355
PG P
Sbjct: 198 TSYHPGCVP 206
>d1y6va1 c.76.1.1 (A:1-449) Alkaline phosphatase {Escherichia coli
[TaxId: 562]}
Length = 449
Score = 27.0 bits (59), Expect = 4.8
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 83 MDEMAYSINGENKHYGTPTNPCAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGS 137
+D + + G+ HY PD V ++S +A + G K + +LG D
Sbjct: 75 IDALPLT--GQYTHYALNKKTGKPDYVTDSAASATAWSTGVKTYNGALGVDIHEK 127
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain
(RecD) {Escherichia coli [TaxId: 562]}
Length = 359
Score = 26.4 bits (57), Expect = 7.5
Identities = 27/195 (13%), Positives = 57/195 (29%), Gaps = 15/195 (7%)
Query: 48 FGNPDWARTHSAATSTA-PAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPCAP 106
F D A + A ++V+SGG + T + ++ ++ AP
Sbjct: 144 FPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAP 203
Query: 107 DRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYCGIFGFRPSHSAVSTAGVIPMA 166
+ +A + L + R + + + A
Sbjct: 204 -------TGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHA 256
Query: 167 QSFDTVGWFAWDPKILNRVGRVLLQLADDVNLVRP--SQVIFAEDCLQLSSIPSDRVTQG 224
+ D +++ + L + + P ++VIF D QL+S+ + V
Sbjct: 257 GN-----PLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGD 311
Query: 225 LVKSVEKLFGGHIIE 239
+ F
Sbjct: 312 ICAYANAGFTAERAR 326
>d1mrja_ d.165.1.1 (A:) alpha-Trichosanthin {Mongolian snake gourd
(Trichosanthes kirilowii Maxim.) [TaxId: 3677]}
Length = 247
Score = 26.0 bits (57), Expect = 8.4
Identities = 5/28 (17%), Positives = 11/28 (39%)
Query: 329 TELRAALSALLGDHGILVIPTVPGPPPK 356
+ LR AL + I ++ + +
Sbjct: 19 SNLRKALPNERKLYDIPLLRSSLPGSQR 46
>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase
(8-amino-7-oxonanoate synthase, AONS) {Escherichia coli
[TaxId: 562]}
Length = 383
Score = 26.4 bits (57), Expect = 8.4
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
Query: 334 ALSALLGDHGILVI----PTVPGPPPKLQMDPSA 363
L+ L G V PTVP +L++ +A
Sbjct: 332 QLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTA 365
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.397
Gapped
Lambda K H
0.267 0.0597 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,578,351
Number of extensions: 72910
Number of successful extensions: 236
Number of sequences better than 10.0: 1
Number of HSP's gapped: 227
Number of HSP's successfully gapped: 16
Length of query: 431
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 343
Effective length of database: 1,199,356
Effective search space: 411379108
Effective search space used: 411379108
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.9 bits)