Query 044301
Match_columns 154
No_of_seqs 122 out of 318
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 23:20:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044301.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044301hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2mss_A Protein (musashi1); RNA 98.1 1.5E-06 5E-11 56.1 3.0 33 38-70 2-34 (75)
2 1uaw_A Mouse-musashi-1; RNP-ty 98.1 2.4E-06 8.2E-11 55.0 3.0 33 38-70 3-35 (77)
3 3s7r_A Heterogeneous nuclear r 98.0 2.6E-06 8.7E-11 56.3 3.2 38 33-70 9-46 (87)
4 3mdf_A Peptidyl-prolyl CIS-tra 98.0 3.1E-06 1.1E-10 55.4 3.2 38 33-70 5-42 (85)
5 2lxi_A RNA-binding protein 10; 98.0 3.2E-06 1.1E-10 57.7 3.3 35 36-70 2-37 (91)
6 3bs9_A Nucleolysin TIA-1 isofo 98.0 3.3E-06 1.1E-10 55.4 3.2 36 35-70 6-41 (87)
7 3ucg_A Polyadenylate-binding p 98.0 4.5E-06 1.5E-10 55.0 3.7 35 36-70 7-41 (89)
8 2e5h_A Zinc finger CCHC-type a 98.0 4.4E-06 1.5E-10 55.8 3.5 37 34-70 15-51 (94)
9 2dnm_A SRP46 splicing factor; 98.0 5.2E-06 1.8E-10 56.6 3.7 38 33-70 11-48 (103)
10 1x4d_A Matrin 3; structural ge 98.0 3.7E-06 1.2E-10 60.2 3.0 35 35-69 15-50 (102)
11 3md1_A Nuclear and cytoplasmic 98.0 4.3E-06 1.5E-10 54.5 3.0 34 37-70 3-36 (83)
12 4fxv_A ELAV-like protein 1; RN 98.0 5.8E-06 2E-10 57.5 3.8 35 36-70 20-54 (99)
13 1iqt_A AUF1, heterogeneous nuc 97.9 9.3E-06 3.2E-10 52.1 4.4 33 38-70 2-34 (75)
14 2khc_A Testis-specific RNP-typ 97.9 5.7E-06 1.9E-10 57.7 3.2 37 34-70 39-75 (118)
15 2dh8_A DAZ-associated protein 97.9 4.9E-06 1.7E-10 56.9 2.8 38 33-70 14-51 (105)
16 2cqc_A Arginine/serine-rich sp 97.9 6E-06 2E-10 55.0 3.0 36 35-70 15-50 (95)
17 1p27_B RNA-binding protein 8A; 97.9 7.9E-06 2.7E-10 55.8 3.6 36 35-70 23-58 (106)
18 2ywk_A Putative RNA-binding pr 97.9 9.8E-06 3.4E-10 54.1 3.9 37 34-70 15-51 (95)
19 1x4e_A RNA binding motif, sing 97.9 8.7E-06 3E-10 53.5 3.5 37 34-70 4-40 (85)
20 3r27_A HnRNP L, heterogeneous 97.9 1.5E-05 5E-10 57.6 4.7 35 35-69 21-55 (100)
21 2kn4_A Immunoglobulin G-bindin 97.8 1.1E-05 3.7E-10 58.7 3.8 37 34-70 69-105 (158)
22 2e44_A Insulin-like growth fac 97.8 7.8E-06 2.7E-10 54.9 2.7 36 34-69 14-50 (96)
23 2dgx_A KIAA0430 protein; RRM d 97.8 1.8E-05 6.2E-10 53.8 4.6 36 35-70 9-48 (96)
24 1x4a_A Splicing factor, argini 97.8 1.7E-05 6E-10 54.6 4.5 36 34-69 21-56 (109)
25 2cq4_A RNA binding motif prote 97.8 1.6E-05 5.6E-10 55.2 4.4 36 35-70 25-60 (114)
26 2dnh_A Bruno-like 5, RNA bindi 97.8 1.2E-05 4.1E-10 54.7 3.6 37 34-70 14-50 (105)
27 1x5s_A Cold-inducible RNA-bind 97.8 3E-05 1E-09 52.5 5.5 38 33-70 10-47 (102)
28 2dgo_A Cytotoxic granule-assoc 97.8 1E-05 3.5E-10 56.1 3.2 37 34-70 14-50 (115)
29 2x1f_A MRNA 3'-END-processing 97.8 2.3E-05 7.8E-10 52.9 4.8 34 37-70 4-37 (96)
30 2dgp_A Bruno-like 4, RNA bindi 97.8 2E-05 6.7E-10 53.8 4.5 38 33-70 11-48 (106)
31 1p1t_A Cleavage stimulation fa 97.8 8.9E-06 3E-10 55.2 2.7 35 36-70 9-43 (104)
32 1x5u_A Splicing factor 3B subu 97.8 2.5E-05 8.4E-10 53.2 4.9 38 33-70 13-50 (105)
33 1x4f_A Matrin 3; structural ge 97.8 9.2E-06 3.1E-10 59.5 2.9 35 34-68 24-59 (112)
34 2cqb_A Peptidyl-prolyl CIS-tra 97.8 2E-05 6.9E-10 53.4 4.4 37 34-70 11-47 (102)
35 2dnz_A Probable RNA-binding pr 97.8 2.4E-05 8.3E-10 52.2 4.7 37 34-70 4-40 (95)
36 2cpz_A CUG triplet repeat RNA- 97.8 1.2E-05 4E-10 56.0 3.2 36 35-70 25-60 (115)
37 2do4_A Squamous cell carcinoma 97.8 1.4E-05 4.9E-10 54.1 3.6 38 33-70 15-52 (100)
38 1whw_A Hypothetical protein ri 97.8 2.4E-05 8.1E-10 52.8 4.6 38 33-70 6-43 (99)
39 3s8s_A Histone-lysine N-methyl 97.8 1.1E-05 3.8E-10 57.3 3.0 36 35-70 6-41 (110)
40 1x4b_A Heterogeneous nuclear r 97.8 2.5E-05 8.6E-10 54.3 4.7 36 35-70 27-62 (116)
41 1s79_A Lupus LA protein; RRM, 97.8 2.4E-05 8.4E-10 55.0 4.7 37 34-70 10-46 (103)
42 2cqd_A RNA-binding region cont 97.8 2.9E-05 9.8E-10 54.1 4.9 37 34-70 16-52 (116)
43 2xs2_A Deleted in azoospermia- 97.8 2E-05 6.9E-10 53.5 3.9 36 35-70 9-44 (102)
44 2dgs_A DAZ-associated protein 97.8 2.7E-05 9.3E-10 52.6 4.5 38 33-70 8-45 (99)
45 2jwn_A Embryonic polyadenylate 97.8 9.1E-06 3.1E-10 57.1 2.1 36 35-70 36-71 (124)
46 1oo0_B CG8781-PA, drosophila Y 97.8 3.4E-05 1.1E-09 53.1 4.9 37 34-70 25-61 (110)
47 2rs2_A Musashi-1, RNA-binding 97.7 3.6E-05 1.2E-09 53.8 5.0 38 33-70 23-60 (109)
48 1x5t_A Splicing factor 3B subu 97.7 2.6E-05 8.9E-10 52.1 4.1 36 35-70 5-41 (96)
49 2ku7_A MLL1 PHD3-CYP33 RRM chi 97.7 3.7E-05 1.3E-09 54.3 5.1 37 34-70 62-98 (140)
50 1wex_A Hypothetical protein (r 97.7 2.6E-05 8.7E-10 55.4 4.2 35 35-69 15-49 (104)
51 1x4h_A RNA-binding protein 28; 97.7 3.3E-05 1.1E-09 52.9 4.6 37 34-70 14-50 (111)
52 2div_A TRNA selenocysteine ass 97.7 2.6E-05 9E-10 52.5 4.0 38 33-70 7-45 (99)
53 2ki2_A SS-DNA binding protein 97.7 1.2E-05 4.1E-10 53.4 2.0 34 37-70 3-36 (90)
54 2cjk_A Nuclear polyadenylated 97.7 4.2E-05 1.4E-09 54.6 4.9 36 35-70 3-38 (167)
55 1x5o_A RNA binding motif, sing 97.7 1.9E-05 6.6E-10 54.6 3.1 38 33-70 23-60 (114)
56 1fxl_A Paraneoplastic encephal 97.7 1.9E-05 6.4E-10 55.8 3.0 35 36-70 3-37 (167)
57 2cqg_A TDP-43, TAR DNA-binding 97.7 2.9E-05 1E-09 52.8 3.9 38 33-70 13-50 (103)
58 1whx_A Hypothetical protein ri 97.7 3.2E-05 1.1E-09 54.4 4.2 35 35-69 10-44 (111)
59 2fy1_A RNA-binding motif prote 97.7 5.6E-05 1.9E-09 53.6 5.5 39 33-71 5-43 (116)
60 4a8x_A RNA-binding protein wit 97.7 4.3E-05 1.5E-09 50.0 4.5 38 34-71 3-40 (88)
61 2ytc_A PRE-mRNA-splicing facto 97.7 3.7E-05 1.3E-09 50.3 4.1 36 34-69 11-46 (85)
62 1l3k_A Heterogeneous nuclear r 97.7 2.1E-05 7.3E-10 57.5 3.2 37 34-70 12-48 (196)
63 3d2w_A TAR DNA-binding protein 97.7 3.3E-05 1.1E-09 52.6 3.9 37 33-69 9-45 (89)
64 2jrs_A RNA-binding protein 39; 97.7 1.9E-05 6.4E-10 55.4 2.7 38 33-70 24-61 (108)
65 1sjq_A Polypyrimidine tract-bi 97.7 3.6E-05 1.2E-09 55.9 4.3 36 34-69 15-50 (105)
66 3ulh_A THO complex subunit 4; 97.7 3.4E-05 1.2E-09 52.7 3.9 38 33-70 27-64 (107)
67 2qfj_A FBP-interacting repress 97.7 2.8E-05 9.7E-10 57.6 3.7 36 35-70 28-63 (216)
68 2dhg_A TRNA selenocysteine ass 97.7 3E-05 1E-09 52.6 3.6 37 34-70 8-45 (104)
69 2do0_A HnRNP M, heterogeneous 97.7 3E-05 1E-09 53.5 3.6 36 35-70 15-50 (114)
70 1b7f_A Protein (SXL-lethal pro 97.7 2.1E-05 7.2E-10 56.0 2.8 35 36-70 4-38 (168)
71 3ex7_B RNA-binding protein 8A; 97.7 5.6E-05 1.9E-09 53.1 5.0 36 35-70 22-57 (126)
72 4f25_A Polyadenylate-binding p 97.7 5E-05 1.7E-09 53.5 4.6 36 35-70 5-40 (115)
73 2kt5_A RNA and export factor-b 97.7 5.2E-05 1.8E-09 53.5 4.7 37 34-70 34-70 (124)
74 2cq1_A PTB-like protein L; RRM 97.7 3.4E-05 1.2E-09 54.6 3.7 35 35-69 15-49 (101)
75 2cq0_A Eukaryotic translation 97.7 2.2E-05 7.5E-10 53.4 2.6 38 33-70 13-50 (103)
76 2cqi_A Nucleolysin TIAR; RNA r 97.7 4.4E-05 1.5E-09 51.9 4.1 38 33-70 13-50 (103)
77 2dnp_A RNA-binding protein 14; 97.7 4.3E-05 1.5E-09 50.9 4.0 36 33-68 7-42 (90)
78 1wf0_A TDP-43, TAR DNA-binding 97.6 3.3E-05 1.1E-09 51.3 3.4 36 34-69 4-39 (88)
79 1why_A Hypothetical protein ri 97.6 4.7E-05 1.6E-09 51.4 4.2 36 34-69 16-51 (97)
80 2ek1_A RNA-binding protein 12; 97.6 1.1E-05 3.8E-10 53.9 1.0 37 34-70 14-50 (95)
81 2cq3_A RNA-binding protein 9; 97.6 5E-05 1.7E-09 51.6 4.3 38 33-70 13-50 (103)
82 4f02_A Polyadenylate-binding p 97.6 2.7E-05 9.1E-10 59.5 3.2 35 36-70 16-50 (213)
83 2cph_A RNA binding motif prote 97.6 4.7E-05 1.6E-09 51.8 4.1 38 33-70 13-50 (107)
84 2dnq_A RNA-binding protein 4B; 97.6 4.7E-05 1.6E-09 50.8 4.0 35 34-68 7-41 (90)
85 1h2v_Z 20 kDa nuclear CAP bind 97.6 3.2E-05 1.1E-09 56.5 3.5 38 33-70 37-74 (156)
86 1u6f_A Tcubp1, RNA-binding pro 97.6 2.2E-05 7.6E-10 56.1 2.5 37 34-70 41-77 (139)
87 2cpf_A RNA binding motif prote 97.6 5E-05 1.7E-09 51.0 4.1 36 35-70 5-40 (98)
88 2ad9_A Polypyrimidine tract-bi 97.6 5.2E-05 1.8E-09 56.0 4.4 35 35-69 31-65 (119)
89 2dis_A Unnamed protein product 97.6 6.2E-05 2.1E-09 51.5 4.5 37 35-71 8-45 (109)
90 2m2b_A RNA-binding protein 10; 97.6 5.4E-05 1.9E-09 54.2 4.4 37 34-70 22-60 (131)
91 2lkz_A RNA-binding protein 5; 97.6 4.5E-05 1.5E-09 53.3 3.8 34 37-70 11-46 (95)
92 2la6_A RNA-binding protein FUS 97.6 5.2E-05 1.8E-09 51.3 4.0 38 33-70 11-56 (99)
93 2dgt_A RNA-binding protein 30; 97.6 5.7E-05 2E-09 50.5 4.2 36 33-68 8-43 (92)
94 2dgv_A HnRNP M, heterogeneous 97.6 6.3E-05 2.2E-09 49.8 4.3 36 34-69 7-42 (92)
95 2kxn_B Transformer-2 protein h 97.6 2.3E-05 7.8E-10 57.0 2.3 37 34-70 45-81 (129)
96 3p5t_L Cleavage and polyadenyl 97.6 3.8E-05 1.3E-09 51.5 3.0 34 37-70 3-38 (90)
97 3md3_A Nuclear and cytoplasmic 97.6 3.1E-05 1.1E-09 54.6 2.7 34 37-70 2-35 (166)
98 2cpj_A Non-POU domain-containi 97.6 5.4E-05 1.9E-09 51.3 3.8 36 34-69 14-49 (99)
99 1rk8_A CG8781-PA, CG8781-PA pr 97.6 5.5E-05 1.9E-09 56.2 4.1 35 36-70 73-107 (165)
100 2d9p_A Polyadenylate-binding p 97.6 5.3E-05 1.8E-09 51.5 3.5 37 34-70 14-50 (103)
101 2la4_A Nuclear and cytoplasmic 97.6 7.7E-05 2.6E-09 50.5 4.2 34 35-68 27-60 (101)
102 2cpi_A CCR4-NOT transcription 97.5 3.8E-05 1.3E-09 53.6 2.7 38 33-70 13-53 (111)
103 2hvz_A Splicing factor, argini 97.5 7.7E-05 2.6E-09 50.5 4.1 34 37-70 2-35 (101)
104 2dgu_A Heterogeneous nuclear r 97.5 7.3E-05 2.5E-09 51.1 3.9 35 34-68 10-44 (103)
105 2cpy_A RNA-binding protein 12; 97.5 9.1E-05 3.1E-09 51.9 4.4 37 34-70 14-51 (114)
106 2cqp_A RNA-binding protein 12; 97.5 1.8E-05 6E-10 53.3 0.7 36 34-69 14-49 (98)
107 1x4g_A Nucleolysin TIAR; struc 97.5 7.8E-05 2.7E-09 51.4 3.9 38 33-70 23-60 (109)
108 2cjk_A Nuclear polyadenylated 97.5 4.8E-05 1.7E-09 54.2 2.9 36 35-70 87-122 (167)
109 2krb_A Eukaryotic translation 97.5 8.2E-05 2.8E-09 48.8 3.6 33 37-69 3-41 (81)
110 3ns6_A Eukaryotic translation 97.5 2.7E-05 9.4E-10 53.6 1.3 35 36-70 7-47 (100)
111 3lqv_A PRE-mRNA branch site pr 97.5 0.00011 3.7E-09 50.9 4.3 35 35-69 8-42 (115)
112 2g4b_A Splicing factor U2AF 65 97.5 7.3E-05 2.5E-09 53.5 3.5 36 35-70 94-129 (172)
113 2cpe_A RNA-binding protein EWS 97.5 0.00011 3.9E-09 50.6 4.3 38 33-70 13-58 (113)
114 1l3k_A Heterogeneous nuclear r 97.5 6.5E-05 2.2E-09 54.9 3.2 37 34-70 103-139 (196)
115 3nmr_A Cugbp ELAV-like family 97.5 9.3E-05 3.2E-09 52.8 3.9 37 34-70 94-130 (175)
116 2lea_A Serine/arginine-rich sp 97.5 0.00013 4.4E-09 53.2 4.7 36 35-70 47-82 (135)
117 2kvi_A Nuclear polyadenylated 97.5 0.00012 3.9E-09 49.6 4.1 35 33-67 8-43 (96)
118 2qfj_A FBP-interacting repress 97.4 0.00018 6.3E-09 53.2 5.4 39 32-70 122-160 (216)
119 1wi8_A EIF-4B, eukaryotic tran 97.4 0.00013 4.4E-09 49.8 4.3 36 34-70 14-49 (104)
120 1x4c_A Splicing factor, argini 97.4 0.00013 4.5E-09 50.5 4.3 35 35-69 15-49 (108)
121 2e5g_A U6 snRNA-specific termi 97.4 0.00016 5.4E-09 48.6 4.6 32 34-65 7-38 (94)
122 1b7f_A Protein (SXL-lethal pro 97.4 7.5E-05 2.6E-09 53.1 3.1 38 34-71 88-125 (168)
123 1wf1_A RNA-binding protein RAL 97.4 0.00016 5.4E-09 50.0 4.7 32 36-67 28-60 (110)
124 3md3_A Nuclear and cytoplasmic 97.4 7.9E-05 2.7E-09 52.5 3.2 37 34-70 86-122 (166)
125 2xnq_A Nuclear polyadenylated 97.4 0.00014 4.8E-09 49.9 4.3 35 33-67 20-55 (97)
126 1fxl_A Paraneoplastic encephal 97.4 8.9E-05 3E-09 52.3 3.2 37 34-70 87-123 (167)
127 2err_A Ataxin-2-binding protei 97.4 0.00014 4.6E-09 50.8 4.1 38 33-70 27-64 (109)
128 1sjr_A Polypyrimidine tract-bi 97.4 0.00011 3.8E-09 57.5 3.9 34 35-68 46-79 (164)
129 2nlw_A Eukaryotic translation 97.4 0.00015 5E-09 50.2 4.0 34 35-68 15-54 (105)
130 2j76_E EIF-4B, EIF4B, eukaryot 97.4 0.0001 3.4E-09 50.4 3.1 37 33-70 17-53 (100)
131 2i2y_A Fusion protein consists 97.4 0.00011 3.8E-09 53.3 3.4 38 33-70 71-108 (150)
132 2dnl_A Cytoplasmic polyadenyla 97.4 0.00018 6.2E-09 50.3 4.4 35 35-70 8-42 (114)
133 2jvo_A Nucleolar protein 3; nu 97.4 0.0002 6.8E-09 50.2 4.5 37 32-68 28-64 (108)
134 1nu4_A U1A RNA binding domain; 97.4 0.00019 6.5E-09 47.9 4.2 35 34-68 7-45 (97)
135 3nmr_A Cugbp ELAV-like family 97.4 0.00016 5.5E-09 51.5 4.0 35 36-70 4-38 (175)
136 2jvr_A Nucleolar protein 3; RN 97.3 0.00015 5.2E-09 52.3 3.8 36 33-68 26-62 (111)
137 2yh0_A Splicing factor U2AF 65 97.3 0.00021 7E-09 52.3 4.3 38 33-70 112-149 (198)
138 1wg5_A Heterogeneous nuclear r 97.3 0.00021 7.3E-09 49.2 4.2 38 33-70 13-51 (104)
139 2f3j_A RNA and export factor b 97.3 0.00029 9.9E-09 53.8 5.3 36 35-70 88-123 (177)
140 2ghp_A U4/U6 snRNA-associated 97.3 0.00015 5E-09 57.0 3.6 40 31-70 37-76 (292)
141 2cqh_A IGF-II mRNA-binding pro 97.3 0.00015 5.2E-09 48.3 3.2 34 34-67 7-41 (93)
142 2cpd_A Apobec-1 stimulating pr 97.3 0.00028 9.4E-09 47.7 4.4 35 34-68 14-50 (99)
143 2dng_A Eukaryotic translation 97.3 0.00019 6.4E-09 48.9 3.5 36 34-70 14-49 (103)
144 3n9u_C Cleavage and polyadenyl 97.3 0.00018 6.2E-09 54.1 3.7 36 35-70 55-92 (156)
145 2a3j_A U1 small nuclear ribonu 97.2 0.00028 9.6E-09 51.8 4.0 34 35-68 29-66 (127)
146 2lcw_A RNA-binding protein FUS 96.3 5.3E-05 1.8E-09 52.8 0.0 37 34-70 6-50 (116)
147 2lmi_A GRSF-1, G-rich sequence 97.2 0.00026 9E-09 49.0 3.4 38 33-70 9-49 (107)
148 3beg_B Splicing factor, argini 97.1 0.00026 8.8E-09 49.9 3.1 35 35-69 16-50 (115)
149 3q2s_C Cleavage and polyadenyl 97.1 0.00033 1.1E-08 55.5 3.7 36 35-70 68-105 (229)
150 2voo_A Lupus LA protein; RNA-b 97.1 0.00036 1.2E-08 53.8 3.8 37 34-70 108-144 (193)
151 3tyt_A Heterogeneous nuclear r 97.1 0.00046 1.6E-08 53.5 4.4 34 36-69 5-39 (205)
152 1wez_A HnRNP H', FTP-3, hetero 97.1 0.00028 9.6E-09 49.1 2.8 37 33-70 13-49 (102)
153 1qm9_A Polypyrimidine tract-bi 97.1 0.00051 1.7E-08 50.8 4.4 35 36-70 4-39 (198)
154 2e5i_A Heterogeneous nuclear r 97.1 0.00044 1.5E-08 51.2 4.0 32 37-68 27-58 (124)
155 2dha_A FLJ20171 protein; RRM d 97.1 0.00073 2.5E-08 49.4 5.1 39 32-70 20-62 (123)
156 1wel_A RNA-binding protein 12; 97.1 0.00011 3.7E-09 52.1 0.5 34 33-66 23-56 (124)
157 2db1_A Heterogeneous nuclear r 97.1 0.00037 1.3E-08 49.4 3.3 37 34-70 16-55 (118)
158 2wbr_A GW182, gawky, LD47780P; 97.1 0.00049 1.7E-08 49.5 3.9 35 35-69 7-41 (89)
159 2fc9_A NCL protein; structure 97.0 0.00045 1.5E-08 46.7 3.5 29 34-62 14-42 (101)
160 2dgw_A Probable RNA-binding pr 97.0 0.00059 2E-08 45.2 3.7 37 33-70 8-44 (91)
161 2e5j_A Methenyltetrahydrofolat 97.0 0.00046 1.6E-08 46.6 3.1 30 34-63 18-47 (97)
162 3pgw_S U1-70K; protein-RNA com 97.0 0.0013 4.6E-08 57.0 6.7 35 36-70 103-137 (437)
163 3zzy_A Polypyrimidine tract-bi 97.0 0.00061 2.1E-08 51.2 4.0 34 36-69 29-62 (130)
164 3smz_A Protein raver-1, ribonu 97.0 0.00049 1.7E-08 53.7 3.5 37 34-70 94-130 (284)
165 1owx_A Lupus LA protein, SS-B, 96.9 0.00068 2.3E-08 50.7 3.9 37 34-70 17-54 (121)
166 2hzc_A Splicing factor U2AF 65 96.9 0.00099 3.4E-08 43.4 4.2 35 35-69 6-51 (87)
167 1qm9_A Polypyrimidine tract-bi 96.9 0.0012 4.3E-08 48.6 5.0 36 35-70 120-156 (198)
168 2adc_A Polypyrimidine tract-bi 96.9 0.0009 3.1E-08 51.5 4.3 37 34-70 33-70 (229)
169 2hgn_A Heterogeneous nuclear r 96.9 0.0012 4E-08 49.4 4.7 37 33-70 44-80 (139)
170 2hgl_A HNRPF protein, heteroge 96.8 0.00073 2.5E-08 50.2 3.1 37 34-70 43-82 (136)
171 2cpx_A Hypothetical protein FL 96.8 0.00031 1E-08 48.4 1.0 33 34-66 24-56 (115)
172 3tyt_A Heterogeneous nuclear r 96.8 0.00082 2.8E-08 52.1 3.5 35 36-70 124-160 (205)
173 3pgw_A U1-A; protein-RNA compl 96.8 0.0013 4.3E-08 51.3 4.4 35 36-70 208-242 (282)
174 2cq2_A Hypothetical protein LO 96.8 0.00089 3E-08 49.2 3.2 36 34-69 24-61 (114)
175 1fjc_A Nucleolin RBD2, protein 96.7 0.00073 2.5E-08 45.1 2.5 32 34-65 15-46 (96)
176 3sde_A Paraspeckle component 1 96.7 0.0012 4E-08 51.9 3.9 37 34-70 95-131 (261)
177 3egn_A RNA-binding protein 40; 96.7 0.0011 3.8E-08 47.6 3.3 32 34-65 44-75 (143)
178 1wg1_A KIAA1579 protein, homol 96.7 0.0012 4.1E-08 43.9 3.2 32 35-67 5-36 (88)
179 3sde_A Paraspeckle component 1 96.7 0.0014 4.9E-08 51.4 4.2 37 33-69 20-56 (261)
180 1fj7_A Nucleolin RBD1, protein 96.6 0.00071 2.4E-08 45.7 1.9 31 34-64 16-46 (101)
181 2dnn_A RNA-binding protein 12; 96.6 0.0023 7.9E-08 45.6 4.7 34 36-70 17-50 (109)
182 2ghp_A U4/U6 snRNA-associated 96.6 0.0015 5.1E-08 51.2 4.0 37 34-70 116-153 (292)
183 3smz_A Protein raver-1, ribonu 96.6 0.0027 9.3E-08 49.5 5.3 42 25-67 12-53 (284)
184 4f02_A Polyadenylate-binding p 96.6 0.002 6.8E-08 49.0 4.2 37 34-70 102-138 (213)
185 2adc_A Polypyrimidine tract-bi 96.6 0.0025 8.6E-08 49.0 4.7 36 35-70 151-187 (229)
186 2j8a_A Histone-lysine N-methyl 96.3 0.0029 9.9E-08 49.0 3.7 35 36-70 3-41 (136)
187 2hgm_A HNRPF protein, heteroge 96.3 0.0048 1.6E-07 45.5 4.7 37 33-70 40-78 (126)
188 2yh0_A Splicing factor U2AF 65 96.2 0.0048 1.6E-07 44.9 4.3 31 36-66 5-35 (198)
189 3pgw_A U1-A; protein-RNA compl 96.1 0.0048 1.6E-07 48.0 4.2 35 35-69 9-47 (282)
190 3u1l_A PRE-mRNA-splicing facto 96.0 0.0028 9.6E-08 51.9 2.5 36 34-69 133-177 (240)
191 1x5p_A Negative elongation fac 95.9 0.0073 2.5E-07 40.5 3.7 32 34-67 14-45 (97)
192 1fje_B Nucleolin RBD12, protei 95.8 0.0056 1.9E-07 43.9 3.1 32 34-65 98-129 (175)
193 2g4b_A Splicing factor U2AF 65 95.7 0.01 3.5E-07 42.2 4.0 28 35-62 4-31 (172)
194 2fc8_A NCL protein; structure 95.7 0.0072 2.5E-07 40.6 2.9 30 33-62 13-42 (102)
195 1fje_B Nucleolin RBD12, protei 95.1 0.0083 2.8E-07 43.1 1.9 32 33-64 11-42 (175)
196 2bz2_A Negative elongation fac 94.8 0.023 7.9E-07 40.6 3.4 33 34-68 38-70 (121)
197 2diu_A KIAA0430 protein; struc 94.0 0.036 1.2E-06 40.4 3.0 29 37-65 11-44 (96)
198 1ufw_A Synaptojanin 2; RNP dom 93.9 0.041 1.4E-06 40.1 3.2 36 35-70 15-59 (95)
199 2d9o_A DNAJ (HSP40) homolog, s 93.7 0.048 1.7E-06 38.5 3.3 24 45-68 27-50 (100)
200 2dnr_A Synaptojanin-1; RRM dom 93.7 0.045 1.5E-06 39.5 3.1 35 36-70 8-50 (91)
201 3tht_A Alkylated DNA repair pr 93.1 0.055 1.9E-06 46.3 3.2 35 35-69 18-54 (345)
202 2dit_A HIV TAT specific factor 92.8 0.1 3.5E-06 36.1 3.7 35 33-67 13-58 (112)
203 2l9w_A U4/U6 snRNA-associated- 92.7 0.15 5.1E-06 38.8 4.7 50 21-70 7-61 (117)
204 2pe8_A Splicing factor 45; RRM 92.1 0.18 6.3E-06 35.3 4.3 37 34-70 7-48 (105)
205 1uw4_A UPF3X; nonsense mediate 90.1 0.3 1E-05 34.8 3.8 52 38-104 4-55 (91)
206 3pq1_A Poly(A) RNA polymerase; 89.1 0.17 5.8E-06 45.2 2.4 34 35-69 53-86 (464)
207 3ue2_A Poly(U)-binding-splicin 86.1 0.69 2.4E-05 33.3 3.6 37 34-70 19-60 (118)
208 3v4m_A Splicing factor U2AF 65 85.8 0.45 1.5E-05 33.2 2.5 36 35-70 5-50 (105)
209 1whv_A Poly(A)-specific ribonu 84.5 0.84 2.9E-05 33.7 3.5 31 32-63 13-43 (100)
210 2l08_A Regulator of nonsense t 84.3 0.51 1.7E-05 34.3 2.2 53 38-105 12-64 (97)
211 1jmt_A Splicing factor U2AF 35 82.7 0.17 5.6E-06 35.3 -0.9 19 52-70 43-62 (104)
212 3ctr_A Poly(A)-specific ribonu 79.7 1.4 4.8E-05 32.5 3.1 28 34-62 5-32 (101)
213 3s6e_A RNA-binding protein 39; 72.2 2.5 8.5E-05 30.2 2.7 20 50-69 32-51 (114)
214 2a1j_A DNA repair endonuclease 52.0 4.3 0.00015 26.4 0.7 28 42-70 8-35 (63)
215 3d45_A Poly(A)-specific ribonu 38.9 23 0.00078 31.4 3.5 29 33-62 438-466 (507)
216 1yrx_A Hypothetical protein RS 37.9 16 0.00055 26.9 2.1 23 36-58 6-28 (121)
217 2iyg_A APPA, antirepressor of 37.5 17 0.00057 27.0 2.1 24 35-58 17-40 (124)
218 1x0p_A Hypothetical protein TL 37.2 17 0.00057 27.2 2.1 23 36-58 5-27 (143)
219 2hfn_A Synechocystis photorece 35.9 18 0.00061 27.4 2.1 23 36-58 8-30 (153)
220 1z00_B DNA repair endonuclease 35.8 10 0.00035 26.2 0.7 28 42-70 22-49 (84)
221 3dxb_A Thioredoxin N-terminall 30.5 28 0.00096 26.0 2.4 22 49-70 143-164 (222)
222 2vt3_A REX, redox-sensing tran 28.2 29 0.00098 27.4 2.1 35 35-69 29-67 (215)
223 2byc_A Blue-light receptor of 26.8 23 0.00078 26.5 1.3 23 36-58 7-29 (137)
224 3keo_A Redox-sensing transcrip 23.9 31 0.0011 27.4 1.6 18 46-63 43-60 (212)
225 2d11_E Na(+)/H(+) exchange reg 22.9 41 0.0014 19.6 1.6 15 45-59 14-28 (28)
226 3ghf_A Septum site-determining 22.6 59 0.002 23.4 2.8 29 33-61 47-75 (120)
227 2dt5_A AT-rich DNA-binding pro 22.6 40 0.0014 26.4 2.0 22 46-67 39-60 (211)
228 3enu_A Nitrollin, putative unc 22.0 18 0.00063 27.0 -0.1 31 96-126 22-54 (114)
229 2d10_E Ezrin-radixin-moesin bi 20.7 49 0.0017 19.3 1.6 15 45-59 14-28 (28)
230 3eyp_A Putative alpha-L-fucosi 20.5 1.3E+02 0.0045 26.4 5.1 52 19-70 103-168 (469)
No 1
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=98.12 E-value=1.5e-06 Score=56.07 Aligned_cols=33 Identities=9% Similarity=0.322 Sum_probs=31.3
Q ss_pred EEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 38 CYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 38 IYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
|||+.||+.++...|+++|++||+|..+.+...
T Consensus 2 l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~ 34 (75)
T 2mss_A 2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFD 34 (75)
T ss_dssp EEEECCCSSCCHHHHHHHHHTTSCCSEECCCBC
T ss_pred EEEecCCCCCCHHHHHHHHHhcCCEEEEEEEec
Confidence 899999999999999999999999999998765
No 2
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.05 E-value=2.4e-06 Score=54.97 Aligned_cols=33 Identities=15% Similarity=0.394 Sum_probs=31.5
Q ss_pred EEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 38 CYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 38 IYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
|||+.||+.++...|+++|++||+|..+.+...
T Consensus 3 l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~ 35 (77)
T 1uaw_A 3 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRD 35 (77)
T ss_dssp EEEESCCSSCCSHHHHHHHTTTSCCCCEEEECC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecC
Confidence 899999999999999999999999999999765
No 3
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=98.05 E-value=2.6e-06 Score=56.35 Aligned_cols=38 Identities=11% Similarity=0.333 Sum_probs=35.0
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 33 DQRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 33 ~k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
...-.|||+.||+.++...|+++|++||.|..+.+...
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~ 46 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMD 46 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeec
Confidence 45678999999999999999999999999999999765
No 4
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=98.02 E-value=3.1e-06 Score=55.39 Aligned_cols=38 Identities=16% Similarity=0.396 Sum_probs=34.5
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 33 DQRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 33 ~k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
...-.|||+.||+.++...|+++|++||.|..|.+...
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~ 42 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLD 42 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEEC
Confidence 34568999999999999999999999999999999764
No 5
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=98.02 E-value=3.2e-06 Score=57.73 Aligned_cols=35 Identities=20% Similarity=0.315 Sum_probs=32.4
Q ss_pred ceEEecCCCCCCCHHHHHHHHhccC-ccceEEeccC
Q 044301 36 GICYLSRIPPHMDPVKLRQILSQYG-EIQRIYLAPE 70 (154)
Q Consensus 36 GVIYlSrIPp~M~p~klR~llsqfG-eI~RIyL~pE 70 (154)
-+|||+.||+.++...|+++|++|| +|..|+|...
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d 37 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRN 37 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEec
Confidence 3799999999999999999999999 8999998764
No 6
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=98.01 E-value=3.3e-06 Score=55.44 Aligned_cols=36 Identities=8% Similarity=0.327 Sum_probs=33.3
Q ss_pred cceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 35 RGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 35 ~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
.-.|||+.||+.++...|+++|++||.|..|.+...
T Consensus 6 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~ 41 (87)
T 3bs9_A 6 HFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKD 41 (87)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEec
Confidence 447999999999999999999999999999999765
No 7
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=98.00 E-value=4.5e-06 Score=55.03 Aligned_cols=35 Identities=11% Similarity=0.223 Sum_probs=32.9
Q ss_pred ceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 36 GICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 36 GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
-.|||+.||+.++...|+++|++||.|..+++...
T Consensus 7 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~ 41 (89)
T 3ucg_A 7 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCD 41 (89)
T ss_dssp TEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEES
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEec
Confidence 46999999999999999999999999999999865
No 8
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.99 E-value=4.4e-06 Score=55.78 Aligned_cols=37 Identities=22% Similarity=0.542 Sum_probs=34.2
Q ss_pred CcceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 34 QRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 34 k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
..-.|||+.||+.++...|+++|++||.|.+|++...
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~ 51 (94)
T 2e5h_A 15 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKD 51 (94)
T ss_dssp CTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeC
Confidence 4568999999999999999999999999999999775
No 9
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.97 E-value=5.2e-06 Score=56.57 Aligned_cols=38 Identities=21% Similarity=0.451 Sum_probs=34.7
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 33 DQRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 33 ~k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
...-.|||+.||+.++...|+++|++||.|..|+|...
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~ 48 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPRE 48 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeC
Confidence 34578999999999999999999999999999999765
No 10
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.97 E-value=3.7e-06 Score=60.25 Aligned_cols=35 Identities=14% Similarity=0.206 Sum_probs=32.9
Q ss_pred cceEEecCCCC-CCCHHHHHHHHhccCccceEEecc
Q 044301 35 RGICYLSRIPP-HMDPVKLRQILSQYGEIQRIYLAP 69 (154)
Q Consensus 35 ~GVIYlSrIPp-~M~p~klR~llsqfGeI~RIyL~p 69 (154)
.-+|||++||. .++...|+++|++||+|..|+|.+
T Consensus 15 ~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~ 50 (102)
T 1x4d_A 15 RRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILN 50 (102)
T ss_dssp CCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECS
T ss_pred CCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEc
Confidence 45899999999 999999999999999999999975
No 11
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=97.96 E-value=4.3e-06 Score=54.48 Aligned_cols=34 Identities=9% Similarity=0.127 Sum_probs=32.0
Q ss_pred eEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 37 ICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 37 VIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
-|||+.||+.++...|+++|++||.|..+++...
T Consensus 3 ~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~ 36 (83)
T 3md1_A 3 NLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWD 36 (83)
T ss_dssp EEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEEC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEc
Confidence 4899999999999999999999999999999765
No 12
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=97.96 E-value=5.8e-06 Score=57.49 Aligned_cols=35 Identities=23% Similarity=0.391 Sum_probs=32.8
Q ss_pred ceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 36 GICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 36 GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
--|||+.||+.++...|+++|++||+|..|+|...
T Consensus 20 t~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d 54 (99)
T 4fxv_A 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRD 54 (99)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeec
Confidence 36999999999999999999999999999999864
No 13
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=97.95 E-value=9.3e-06 Score=52.08 Aligned_cols=33 Identities=21% Similarity=0.522 Sum_probs=31.3
Q ss_pred EEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 38 CYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 38 IYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
|||+.||+.++...|+++|++||+|..+.+...
T Consensus 2 l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~ 34 (75)
T 1iqt_A 2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMD 34 (75)
T ss_dssp EEESCCCSSCCHHHHHHHHHHHSCCSEECCCCS
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEec
Confidence 899999999999999999999999999998765
No 14
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=97.92 E-value=5.7e-06 Score=57.66 Aligned_cols=37 Identities=8% Similarity=0.236 Sum_probs=34.0
Q ss_pred CcceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 34 QRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 34 k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
..-.|||+.||+.++...|+++|++||+|.+|++...
T Consensus 39 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~ 75 (118)
T 2khc_A 39 EGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFID 75 (118)
T ss_dssp CSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeC
Confidence 3467999999999999999999999999999999865
No 15
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.92 E-value=4.9e-06 Score=56.90 Aligned_cols=38 Identities=24% Similarity=0.387 Sum_probs=34.8
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 33 DQRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 33 ~k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
...-.|||+.||+.++...|+++|++||+|..|+|...
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~ 51 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKD 51 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC
Confidence 34678999999999999999999999999999999775
No 16
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.90 E-value=6e-06 Score=55.03 Aligned_cols=36 Identities=17% Similarity=0.243 Sum_probs=33.6
Q ss_pred cceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 35 RGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 35 ~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
.-.|||+.||+.++...|+++|++||.|.+|.+...
T Consensus 15 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~ 50 (95)
T 2cqc_A 15 NCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYD 50 (95)
T ss_dssp GGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEEC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEc
Confidence 457999999999999999999999999999999765
No 17
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=97.90 E-value=7.9e-06 Score=55.76 Aligned_cols=36 Identities=19% Similarity=0.380 Sum_probs=33.4
Q ss_pred cceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 35 RGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 35 ~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
.-.|||+.||+.++...|+++|++||.|..|+|...
T Consensus 23 ~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~ 58 (106)
T 1p27_B 23 GWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLD 58 (106)
T ss_dssp BEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEec
Confidence 457999999999999999999999999999999765
No 18
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=97.89 E-value=9.8e-06 Score=54.13 Aligned_cols=37 Identities=8% Similarity=0.279 Sum_probs=34.2
Q ss_pred CcceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 34 QRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 34 k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
..-.|||+.||+.++...|+++|++||.|.+|+|...
T Consensus 15 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~ 51 (95)
T 2ywk_A 15 ADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKD 51 (95)
T ss_dssp GGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEEC
Confidence 4568999999999999999999999999999999775
No 19
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.89 E-value=8.7e-06 Score=53.53 Aligned_cols=37 Identities=16% Similarity=0.249 Sum_probs=34.0
Q ss_pred CcceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 34 QRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 34 k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
..-.|||+.||+.++...|+++|++||.|.++.+...
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~ 40 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILD 40 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEec
Confidence 3457999999999999999999999999999999775
No 20
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=97.87 E-value=1.5e-05 Score=57.63 Aligned_cols=35 Identities=14% Similarity=0.294 Sum_probs=32.7
Q ss_pred cceEEecCCCCCCCHHHHHHHHhccCccceEEecc
Q 044301 35 RGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAP 69 (154)
Q Consensus 35 ~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~p 69 (154)
.=+||++.||...+...|+++|++||.|..+.+.+
T Consensus 21 s~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~ 55 (100)
T 3r27_A 21 SPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP 55 (100)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET
T ss_pred CcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc
Confidence 45899999999999999999999999999999864
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=97.85 E-value=1.1e-05 Score=58.67 Aligned_cols=37 Identities=16% Similarity=0.433 Sum_probs=34.5
Q ss_pred CcceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 34 QRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 34 k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
....|||+.||+.++...|+++|++||+|.+|+|...
T Consensus 69 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~ 105 (158)
T 2kn4_A 69 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRD 105 (158)
T ss_dssp BCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeec
Confidence 3679999999999999999999999999999999775
No 22
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.84 E-value=7.8e-06 Score=54.88 Aligned_cols=36 Identities=25% Similarity=0.411 Sum_probs=32.2
Q ss_pred CcceEEecCCCCCCCHHHHHHHHhccCccceE-Eecc
Q 044301 34 QRGICYLSRIPPHMDPVKLRQILSQYGEIQRI-YLAP 69 (154)
Q Consensus 34 k~GVIYlSrIPp~M~p~klR~llsqfGeI~RI-yL~p 69 (154)
..-.|||+.||+.++...|+++|++||.|..+ ++..
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~ 50 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNT 50 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeec
Confidence 45679999999999999999999999999999 4544
No 23
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.84 E-value=1.8e-05 Score=53.82 Aligned_cols=36 Identities=17% Similarity=0.330 Sum_probs=33.0
Q ss_pred cceEEecCCCCCCCHHHHH----HHHhccCccceEEeccC
Q 044301 35 RGICYLSRIPPHMDPVKLR----QILSQYGEIQRIYLAPE 70 (154)
Q Consensus 35 ~GVIYlSrIPp~M~p~klR----~llsqfGeI~RIyL~pE 70 (154)
.--|||+.||..++...|+ ++|++||+|..|++...
T Consensus 9 ~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~ 48 (96)
T 2dgx_A 9 GADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPH 48 (96)
T ss_dssp CEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeC
Confidence 3469999999999999999 99999999999999765
No 24
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.84 E-value=1.7e-05 Score=54.59 Aligned_cols=36 Identities=22% Similarity=0.528 Sum_probs=32.9
Q ss_pred CcceEEecCCCCCCCHHHHHHHHhccCccceEEecc
Q 044301 34 QRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAP 69 (154)
Q Consensus 34 k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~p 69 (154)
..-.|||+.||+.++...|+++|++||.|..|++..
T Consensus 21 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~ 56 (109)
T 1x4a_A 21 NDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN 56 (109)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE
Confidence 356899999999999999999999999999999943
No 25
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.84 E-value=1.6e-05 Score=55.15 Aligned_cols=36 Identities=11% Similarity=0.385 Sum_probs=33.4
Q ss_pred cceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 35 RGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 35 ~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
.-.|||+.||..++...|+++|++||.|..|.|...
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~ 60 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISD 60 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEec
Confidence 357999999999999999999999999999999765
No 26
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=97.83 E-value=1.2e-05 Score=54.75 Aligned_cols=37 Identities=5% Similarity=0.175 Sum_probs=34.3
Q ss_pred CcceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 34 QRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 34 k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
..-.|||+.||+.++...|+++|++||.|..|+|...
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~ 50 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRG 50 (105)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC
Confidence 4568999999999999999999999999999999775
No 27
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.83 E-value=3e-05 Score=52.54 Aligned_cols=38 Identities=18% Similarity=0.468 Sum_probs=35.0
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 33 DQRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 33 ~k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
...-.|||+.||+.++...|+++|++||.|..|+|...
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~ 47 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKD 47 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeC
Confidence 45678999999999999999999999999999999765
No 28
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=97.83 E-value=1e-05 Score=56.09 Aligned_cols=37 Identities=8% Similarity=0.345 Sum_probs=34.0
Q ss_pred CcceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 34 QRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 34 k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
..-.|||+.||+.++...|+++|++||.|..|.|...
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~ 50 (115)
T 2dgo_A 14 NHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKD 50 (115)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEc
Confidence 4567999999999999999999999999999999765
No 29
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=97.82 E-value=2.3e-05 Score=52.88 Aligned_cols=34 Identities=18% Similarity=0.354 Sum_probs=32.3
Q ss_pred eEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 37 ICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 37 VIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
.|||+.||+.++...|+++|++||.|.+|++...
T Consensus 4 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~ 37 (96)
T 2x1f_A 4 VVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFD 37 (96)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBC
T ss_pred EEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeC
Confidence 6999999999999999999999999999999765
No 30
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=97.82 E-value=2e-05 Score=53.76 Aligned_cols=38 Identities=16% Similarity=0.461 Sum_probs=34.5
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 33 DQRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 33 ~k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
...-.|||+.||+.++...|+++|++||+|..|+|...
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~ 48 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKD 48 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEec
Confidence 34567999999999999999999999999999999765
No 31
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.82 E-value=8.9e-06 Score=55.18 Aligned_cols=35 Identities=20% Similarity=0.372 Sum_probs=32.7
Q ss_pred ceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 36 GICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 36 GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
-.|||+.||+.++...|+++|++||.|..|++...
T Consensus 9 ~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~ 43 (104)
T 1p1t_A 9 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYD 43 (104)
T ss_dssp SCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEE
T ss_pred cEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeC
Confidence 46999999999999999999999999999999765
No 32
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.82 E-value=2.5e-05 Score=53.20 Aligned_cols=38 Identities=13% Similarity=0.274 Sum_probs=34.7
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 33 DQRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 33 ~k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
...-.|||+.||+.++...|+++|++||.|..|++...
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~ 50 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKD 50 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEec
Confidence 34568999999999999999999999999999999765
No 33
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.81 E-value=9.2e-06 Score=59.47 Aligned_cols=35 Identities=20% Similarity=0.344 Sum_probs=32.5
Q ss_pred CcceEEecCCCCC-CCHHHHHHHHhccCccceEEec
Q 044301 34 QRGICYLSRIPPH-MDPVKLRQILSQYGEIQRIYLA 68 (154)
Q Consensus 34 k~GVIYlSrIPp~-M~p~klR~llsqfGeI~RIyL~ 68 (154)
..-+|||++||.. ++...|+++|++||+|.+|+|.
T Consensus 24 p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~ 59 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILM 59 (112)
T ss_dssp CCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEE
T ss_pred CCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEe
Confidence 3569999999997 9999999999999999999995
No 34
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.81 E-value=2e-05 Score=53.38 Aligned_cols=37 Identities=16% Similarity=0.407 Sum_probs=34.1
Q ss_pred CcceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 34 QRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 34 k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
..-.|||+.||+.++...|+++|++||.|..|+|...
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~ 47 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLD 47 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEec
Confidence 4568999999999999999999999999999999765
No 35
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.81 E-value=2.4e-05 Score=52.17 Aligned_cols=37 Identities=22% Similarity=0.361 Sum_probs=34.0
Q ss_pred CcceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 34 QRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 34 k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
.+-.|||+.||+.++...|+++|++||.|..|.+...
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~ 40 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKD 40 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeec
Confidence 3557999999999999999999999999999999865
No 36
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=97.80 E-value=1.2e-05 Score=55.98 Aligned_cols=36 Identities=11% Similarity=0.284 Sum_probs=33.5
Q ss_pred cceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 35 RGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 35 ~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
.-.|||+.||+.++...|+++|++||.|..|.|...
T Consensus 25 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~ 60 (115)
T 2cpz_A 25 GANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFID 60 (115)
T ss_dssp TCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEEC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC
Confidence 357999999999999999999999999999999775
No 37
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.80 E-value=1.4e-05 Score=54.08 Aligned_cols=38 Identities=16% Similarity=0.281 Sum_probs=34.7
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 33 DQRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 33 ~k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
...-.|||+.||+.++...|+++|++||.|.+|+|...
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~ 52 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTN 52 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEEC
Confidence 34568999999999999999999999999999999875
No 38
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.80 E-value=2.4e-05 Score=52.75 Aligned_cols=38 Identities=13% Similarity=0.326 Sum_probs=34.5
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 33 DQRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 33 ~k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
...-.|||+.||+.++...|+++|++||.|..|+|...
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~ 43 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPID 43 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEec
Confidence 34568999999999999999999999999999999765
No 39
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=97.79 E-value=1.1e-05 Score=57.29 Aligned_cols=36 Identities=14% Similarity=0.307 Sum_probs=33.1
Q ss_pred cceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 35 RGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 35 ~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
+-.|||+.||+.++...|+++|++||+|..|.|...
T Consensus 6 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d 41 (110)
T 3s8s_A 6 LKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLH 41 (110)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEEC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEC
Confidence 346999999999999999999999999999999765
No 40
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.79 E-value=2.5e-05 Score=54.33 Aligned_cols=36 Identities=11% Similarity=0.216 Sum_probs=33.4
Q ss_pred cceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 35 RGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 35 ~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
.-.|||+.||+.++...|+++|++||+|..|+|...
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~ 62 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRD 62 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEEC
Confidence 357999999999999999999999999999999765
No 41
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.79 E-value=2.4e-05 Score=55.03 Aligned_cols=37 Identities=14% Similarity=0.311 Sum_probs=33.9
Q ss_pred CcceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 34 QRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 34 k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
..-.||++.||+.++...|+++|++||+|..|+|...
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d 46 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRT 46 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEEC
Confidence 3467999999999999999999999999999999764
No 42
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.78 E-value=2.9e-05 Score=54.05 Aligned_cols=37 Identities=16% Similarity=0.398 Sum_probs=34.2
Q ss_pred CcceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 34 QRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 34 k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
..-.|||+.||+.++...|+++|++||+|..|+|...
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~ 52 (116)
T 2cqd_A 16 TFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITD 52 (116)
T ss_dssp SSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEc
Confidence 4567999999999999999999999999999999865
No 43
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=97.77 E-value=2e-05 Score=53.53 Aligned_cols=36 Identities=17% Similarity=0.517 Sum_probs=33.6
Q ss_pred cceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 35 RGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 35 ~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
+--|||+.||+.++...|+++|++||.|..+++...
T Consensus 9 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~ 44 (102)
T 2xs2_A 9 PNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITD 44 (102)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEEC
Confidence 457999999999999999999999999999999775
No 44
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.77 E-value=2.7e-05 Score=52.60 Aligned_cols=38 Identities=13% Similarity=0.414 Sum_probs=34.5
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 33 DQRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 33 ~k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
...-.|||+.||..++...|+++|++||.|..|+|...
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~ 45 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYD 45 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeC
Confidence 34567999999999999999999999999999999765
No 45
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=97.76 E-value=9.1e-06 Score=57.05 Aligned_cols=36 Identities=19% Similarity=0.292 Sum_probs=33.6
Q ss_pred cceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 35 RGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 35 ~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
.-.|||+.||..++...|+++|++||+|..|.+...
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~ 71 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCD 71 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEec
Confidence 468999999999999999999999999999999764
No 46
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=97.76 E-value=3.4e-05 Score=53.07 Aligned_cols=37 Identities=22% Similarity=0.405 Sum_probs=33.7
Q ss_pred CcceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 34 QRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 34 k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
..-.|||+.||+.++...|+++|++||.|..|.+...
T Consensus 25 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~ 61 (110)
T 1oo0_B 25 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLD 61 (110)
T ss_dssp TBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEec
Confidence 3457999999999999999999999999999999764
No 47
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=97.75 E-value=3.6e-05 Score=53.84 Aligned_cols=38 Identities=13% Similarity=0.304 Sum_probs=33.2
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 33 DQRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 33 ~k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
...-.|||+.||+.++...|+++|++||.|..|++...
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~ 60 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRD 60 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEEC
Confidence 44678999999999999999999999999999999765
No 48
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.74 E-value=2.6e-05 Score=52.13 Aligned_cols=36 Identities=17% Similarity=0.349 Sum_probs=32.9
Q ss_pred cceEEecCCCCCCCHHHHHHHHhccCccceE-EeccC
Q 044301 35 RGICYLSRIPPHMDPVKLRQILSQYGEIQRI-YLAPE 70 (154)
Q Consensus 35 ~GVIYlSrIPp~M~p~klR~llsqfGeI~RI-yL~pE 70 (154)
.-.|||+.||+.++...|+++|++||.|..+ ++...
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~ 41 (96)
T 1x5t_A 5 SSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRD 41 (96)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEc
Confidence 4579999999999999999999999999999 88764
No 49
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=97.74 E-value=3.7e-05 Score=54.31 Aligned_cols=37 Identities=16% Similarity=0.407 Sum_probs=34.4
Q ss_pred CcceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 34 QRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 34 k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
..-.|||+.||+.++...|+++|++||.|.+|++...
T Consensus 62 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~ 98 (140)
T 2ku7_A 62 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLD 98 (140)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCC
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeec
Confidence 4678999999999999999999999999999999765
No 50
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.74 E-value=2.6e-05 Score=55.41 Aligned_cols=35 Identities=14% Similarity=0.288 Sum_probs=32.7
Q ss_pred cceEEecCCCCCCCHHHHHHHHhccCccceEEecc
Q 044301 35 RGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAP 69 (154)
Q Consensus 35 ~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~p 69 (154)
.-+|||++||..++...|+++|++||.|.+|++.+
T Consensus 15 ~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~ 49 (104)
T 1wex_A 15 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP 49 (104)
T ss_dssp CSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC
Confidence 35899999999999999999999999999999865
No 51
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.74 E-value=3.3e-05 Score=52.90 Aligned_cols=37 Identities=11% Similarity=0.345 Sum_probs=34.0
Q ss_pred CcceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 34 QRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 34 k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
..-.|||+.||+.++...|+++|++||+|..|.|...
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~ 50 (111)
T 1x4h_A 14 EGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLH 50 (111)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEec
Confidence 3567999999999999999999999999999999865
No 52
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.74 E-value=2.6e-05 Score=52.53 Aligned_cols=38 Identities=13% Similarity=0.269 Sum_probs=34.4
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHhccCccc-eEEeccC
Q 044301 33 DQRGICYLSRIPPHMDPVKLRQILSQYGEIQ-RIYLAPE 70 (154)
Q Consensus 33 ~k~GVIYlSrIPp~M~p~klR~llsqfGeI~-RIyL~pE 70 (154)
...-.|||+.||+.++...|+++|++||.|. .|.+...
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~ 45 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRN 45 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeec
Confidence 3456899999999999999999999999999 9998765
No 53
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=97.72 E-value=1.2e-05 Score=53.39 Aligned_cols=34 Identities=15% Similarity=0.362 Sum_probs=32.1
Q ss_pred eEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 37 ICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 37 VIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
-|||+.||+.++...|+++|++||+|.+|++...
T Consensus 3 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~ 36 (90)
T 2ki2_A 3 NIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYD 36 (90)
T ss_dssp EEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCC
T ss_pred EEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEc
Confidence 4899999999999999999999999999999765
No 54
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=97.71 E-value=4.2e-05 Score=54.55 Aligned_cols=36 Identities=11% Similarity=0.296 Sum_probs=33.3
Q ss_pred cceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 35 RGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 35 ~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
.-.|||+.||+.++...|+++|++||+|..|+|...
T Consensus 3 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~ 38 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKD 38 (167)
T ss_dssp GGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEC
Confidence 357999999999999999999999999999999765
No 55
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.71 E-value=1.9e-05 Score=54.61 Aligned_cols=38 Identities=21% Similarity=0.454 Sum_probs=34.8
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 33 DQRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 33 ~k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
..+--|||+.||+.++...|+++|++||+|..|+|...
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~ 60 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRD 60 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEEC
Confidence 34578999999999999999999999999999999775
No 56
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=97.71 E-value=1.9e-05 Score=55.85 Aligned_cols=35 Identities=20% Similarity=0.378 Sum_probs=32.7
Q ss_pred ceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 36 GICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 36 GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
-.|||+.||+.++...|+++|++||.|..|.+.+.
T Consensus 3 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~ 37 (167)
T 1fxl_A 3 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRD 37 (167)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEC
T ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeC
Confidence 36999999999999999999999999999999875
No 57
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.71 E-value=2.9e-05 Score=52.80 Aligned_cols=38 Identities=13% Similarity=0.274 Sum_probs=34.5
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 33 DQRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 33 ~k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
...-.|||+.||..++...|+++|++||.|..|+|...
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~ 50 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKD 50 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEec
Confidence 34567999999999999999999999999999999765
No 58
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.70 E-value=3.2e-05 Score=54.44 Aligned_cols=35 Identities=14% Similarity=0.434 Sum_probs=32.5
Q ss_pred cceEEecCCCCCCCHHHHHHHHhccCccceEEecc
Q 044301 35 RGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAP 69 (154)
Q Consensus 35 ~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~p 69 (154)
.-.|||+.||+.++...|+++|++||.|.+|+|.+
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~ 44 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE 44 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC
Confidence 35899999999999999999999999999999864
No 59
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=97.70 E-value=5.6e-05 Score=53.56 Aligned_cols=39 Identities=15% Similarity=0.384 Sum_probs=35.3
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHhccCccceEEeccCC
Q 044301 33 DQRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPED 71 (154)
Q Consensus 33 ~k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pEd 71 (154)
..+-.|||+.||..++...|+++|++||.|..|.+....
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 43 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR 43 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC
Confidence 446789999999999999999999999999999998753
No 60
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=97.70 E-value=4.3e-05 Score=49.97 Aligned_cols=38 Identities=21% Similarity=0.363 Sum_probs=34.7
Q ss_pred CcceEEecCCCCCCCHHHHHHHHhccCccceEEeccCC
Q 044301 34 QRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPED 71 (154)
Q Consensus 34 k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pEd 71 (154)
.+-.|||+.||+.++...|+++|++||.|.++.|....
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~ 40 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVER 40 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCC
Confidence 45679999999999999999999999999999998754
No 61
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.69 E-value=3.7e-05 Score=50.29 Aligned_cols=36 Identities=22% Similarity=0.376 Sum_probs=33.2
Q ss_pred CcceEEecCCCCCCCHHHHHHHHhccCccceEEecc
Q 044301 34 QRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAP 69 (154)
Q Consensus 34 k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~p 69 (154)
..-.|||+.||+.++...|+++|++||.|..|.+.+
T Consensus 11 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~ 46 (85)
T 2ytc_A 11 TITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ 46 (85)
T ss_dssp SCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC
Confidence 345799999999999999999999999999999975
No 62
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=97.69 E-value=2.1e-05 Score=57.46 Aligned_cols=37 Identities=14% Similarity=0.230 Sum_probs=34.2
Q ss_pred CcceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 34 QRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 34 k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
..-.|||+.||+.++...|+++|++||.|..|.|...
T Consensus 12 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~ 48 (196)
T 1l3k_A 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRD 48 (196)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEc
Confidence 3568999999999999999999999999999999875
No 63
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=97.69 E-value=3.3e-05 Score=52.57 Aligned_cols=37 Identities=22% Similarity=0.521 Sum_probs=33.4
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHhccCccceEEecc
Q 044301 33 DQRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAP 69 (154)
Q Consensus 33 ~k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~p 69 (154)
..+-.|||+.||..++...|+++|++||.|..++|..
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~ 45 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPK 45 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEee
Confidence 3467899999999999999999999999999999976
No 64
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=97.68 E-value=1.9e-05 Score=55.40 Aligned_cols=38 Identities=21% Similarity=0.301 Sum_probs=34.7
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 33 DQRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 33 ~k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
..+-.|||+.||+.++...|+++|++||.|..|.+...
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~ 61 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMD 61 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEc
Confidence 34668999999999999999999999999999999765
No 65
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.68 E-value=3.6e-05 Score=55.89 Aligned_cols=36 Identities=6% Similarity=0.249 Sum_probs=33.7
Q ss_pred CcceEEecCCCCCCCHHHHHHHHhccCccceEEecc
Q 044301 34 QRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAP 69 (154)
Q Consensus 34 k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~p 69 (154)
..-.|||+.||..++...|+++|++||+|..|+|.+
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~ 50 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK 50 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc
Confidence 456899999999999999999999999999999975
No 66
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=97.68 E-value=3.4e-05 Score=52.67 Aligned_cols=38 Identities=8% Similarity=0.332 Sum_probs=34.9
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 33 DQRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 33 ~k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
...-.|||+.||+.++...|+++|++||.|..|+|...
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~ 64 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYD 64 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC
Confidence 45678999999999999999999999999999999865
No 67
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=97.67 E-value=2.8e-05 Score=57.63 Aligned_cols=36 Identities=19% Similarity=0.330 Sum_probs=33.5
Q ss_pred cceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 35 RGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 35 ~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
.-.|||+.||+.++...|+++|++||.|..|+|...
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~ 63 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWD 63 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeec
Confidence 457999999999999999999999999999999765
No 68
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.67 E-value=3e-05 Score=52.64 Aligned_cols=37 Identities=11% Similarity=0.187 Sum_probs=33.9
Q ss_pred CcceEEecCCCCCCCHHHHHHHHhc-cCccceEEeccC
Q 044301 34 QRGICYLSRIPPHMDPVKLRQILSQ-YGEIQRIYLAPE 70 (154)
Q Consensus 34 k~GVIYlSrIPp~M~p~klR~llsq-fGeI~RIyL~pE 70 (154)
..-.|||+.||+.++...|+++|++ ||.|..|+|...
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~ 45 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD 45 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEEC
Confidence 3467999999999999999999999 999999999765
No 69
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.67 E-value=3e-05 Score=53.45 Aligned_cols=36 Identities=14% Similarity=0.266 Sum_probs=33.1
Q ss_pred cceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 35 RGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 35 ~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
.-.|||+.||+.++...|+++|++||.|..|.|...
T Consensus 15 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~ 50 (114)
T 2do0_A 15 GSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILED 50 (114)
T ss_dssp CSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC
Confidence 457999999999999999999999999999998764
No 70
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=97.66 E-value=2.1e-05 Score=55.97 Aligned_cols=35 Identities=14% Similarity=0.244 Sum_probs=32.9
Q ss_pred ceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 36 GICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 36 GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
-.|||+.||+.++...|+++|++||.|..|++.+.
T Consensus 4 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~ 38 (168)
T 1b7f_A 4 TNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRD 38 (168)
T ss_dssp SEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEE
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEe
Confidence 46999999999999999999999999999999875
No 71
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=97.66 E-value=5.6e-05 Score=53.10 Aligned_cols=36 Identities=19% Similarity=0.380 Sum_probs=33.4
Q ss_pred cceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 35 RGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 35 ~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
.-.|||+.||+.++...|+++|++||.|..|.|...
T Consensus 22 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~ 57 (126)
T 3ex7_B 22 GWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLD 57 (126)
T ss_dssp SEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEec
Confidence 348999999999999999999999999999999765
No 72
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=97.66 E-value=5e-05 Score=53.47 Aligned_cols=36 Identities=17% Similarity=0.334 Sum_probs=33.2
Q ss_pred cceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 35 RGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 35 ~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
.+-|||+.||+.++...|+++|++||.|..+.|...
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d 40 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD 40 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeec
Confidence 456999999999999999999999999999999764
No 73
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=97.66 E-value=5.2e-05 Score=53.45 Aligned_cols=37 Identities=5% Similarity=0.266 Sum_probs=34.1
Q ss_pred CcceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 34 QRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 34 k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
..-.|||+.||+.++...|+++|++||+|..|++...
T Consensus 34 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~ 70 (124)
T 2kt5_A 34 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYD 70 (124)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEC
Confidence 3458999999999999999999999999999999775
No 74
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.66 E-value=3.4e-05 Score=54.62 Aligned_cols=35 Identities=9% Similarity=0.302 Sum_probs=32.6
Q ss_pred cceEEecCCCCCCCHHHHHHHHhccCccceEEecc
Q 044301 35 RGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAP 69 (154)
Q Consensus 35 ~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~p 69 (154)
.-+|||+.||..++...|+++|++||+|..|.+.+
T Consensus 15 ~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~ 49 (101)
T 2cq1_A 15 SRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLK 49 (101)
T ss_dssp CSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEET
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC
Confidence 45899999999999999999999999999998865
No 75
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.65 E-value=2.2e-05 Score=53.43 Aligned_cols=38 Identities=24% Similarity=0.539 Sum_probs=34.6
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 33 DQRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 33 ~k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
...-.|||+.||+.++...|+++|++||+|..|+|...
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~ 50 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKD 50 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeec
Confidence 34578999999999999999999999999999999765
No 76
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.65 E-value=4.4e-05 Score=51.93 Aligned_cols=38 Identities=21% Similarity=0.311 Sum_probs=34.9
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 33 DQRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 33 ~k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
...-.|||+.||+.++...|+++|++||.|..|.|...
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~ 50 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITE 50 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEec
Confidence 34578999999999999999999999999999999875
No 77
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.65 E-value=4.3e-05 Score=50.93 Aligned_cols=36 Identities=8% Similarity=0.218 Sum_probs=33.2
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHhccCccceEEec
Q 044301 33 DQRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLA 68 (154)
Q Consensus 33 ~k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~ 68 (154)
...-.|||+.||+.++...|+++|++||.|..|.+.
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~ 42 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV 42 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE
Confidence 445679999999999999999999999999999986
No 78
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.65 E-value=3.3e-05 Score=51.31 Aligned_cols=36 Identities=22% Similarity=0.505 Sum_probs=33.0
Q ss_pred CcceEEecCCCCCCCHHHHHHHHhccCccceEEecc
Q 044301 34 QRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAP 69 (154)
Q Consensus 34 k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~p 69 (154)
..--|||+.||+.++...|+++|++||+|..+++..
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~ 39 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPK 39 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEec
Confidence 346799999999999999999999999999999864
No 79
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.65 E-value=4.7e-05 Score=51.38 Aligned_cols=36 Identities=14% Similarity=0.274 Sum_probs=32.9
Q ss_pred CcceEEecCCCCCCCHHHHHHHHhccCccceEEecc
Q 044301 34 QRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAP 69 (154)
Q Consensus 34 k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~p 69 (154)
..-.|||+.||+.++...|+++|++||.|..|.+..
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~ 51 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVK 51 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeC
Confidence 346799999999999999999999999999998864
No 80
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=97.65 E-value=1.1e-05 Score=53.86 Aligned_cols=37 Identities=8% Similarity=0.033 Sum_probs=32.3
Q ss_pred CcceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 34 QRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 34 k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
.+-.|||+.||+.++...|+++|++||.|..+.+...
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~ 50 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKY 50 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEe
Confidence 3568999999999999999999999999987777653
No 81
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.64 E-value=5e-05 Score=51.63 Aligned_cols=38 Identities=24% Similarity=0.334 Sum_probs=34.9
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 33 DQRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 33 ~k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
...-.|||+.||+.++...|+++|++||.|..|+|...
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~ 50 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN 50 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEec
Confidence 44678999999999999999999999999999999865
No 82
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=97.64 E-value=2.7e-05 Score=59.51 Aligned_cols=35 Identities=20% Similarity=0.331 Sum_probs=32.8
Q ss_pred ceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 36 GICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 36 GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
--|||+.||+.++...|+++|++||+|..|.|...
T Consensus 16 ~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d 50 (213)
T 4f02_A 16 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD 50 (213)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecc
Confidence 46999999999999999999999999999999765
No 83
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.64 E-value=4.7e-05 Score=51.80 Aligned_cols=38 Identities=18% Similarity=0.449 Sum_probs=34.7
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 33 DQRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 33 ~k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
...-.|||+.||+.++...|+++|++||.|..|+|...
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~ 50 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKK 50 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCC
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecC
Confidence 44578999999999999999999999999999999765
No 84
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.64 E-value=4.7e-05 Score=50.76 Aligned_cols=35 Identities=14% Similarity=0.367 Sum_probs=32.6
Q ss_pred CcceEEecCCCCCCCHHHHHHHHhccCccceEEec
Q 044301 34 QRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLA 68 (154)
Q Consensus 34 k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~ 68 (154)
..-.|||+.||+.++...|+++|++||+|..|++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~ 41 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII 41 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE
Confidence 35679999999999999999999999999999986
No 85
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=97.63 E-value=3.2e-05 Score=56.55 Aligned_cols=38 Identities=13% Similarity=0.330 Sum_probs=35.3
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 33 DQRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 33 ~k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
...-.|||+.||+.++...|+++|++||+|..|+|...
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~ 74 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLD 74 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEec
Confidence 45689999999999999999999999999999999775
No 86
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=97.63 E-value=2.2e-05 Score=56.06 Aligned_cols=37 Identities=27% Similarity=0.493 Sum_probs=34.0
Q ss_pred CcceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 34 QRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 34 k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
..-.|||+.||+.++...|+.+|++||+|..|.+...
T Consensus 41 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~ 77 (139)
T 1u6f_A 41 VLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCD 77 (139)
T ss_dssp TTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEc
Confidence 3468999999999999999999999999999999765
No 87
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.63 E-value=5e-05 Score=51.04 Aligned_cols=36 Identities=11% Similarity=0.227 Sum_probs=33.3
Q ss_pred cceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 35 RGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 35 ~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
.-.|||+.||+.++...|+++|++||.|..|.|...
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~ 40 (98)
T 2cpf_A 5 SSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKK 40 (98)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEec
Confidence 457999999999999999999999999999999764
No 88
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.62 E-value=5.2e-05 Score=55.95 Aligned_cols=35 Identities=6% Similarity=0.258 Sum_probs=32.9
Q ss_pred cceEEecCCCCCCCHHHHHHHHhccCccceEEecc
Q 044301 35 RGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAP 69 (154)
Q Consensus 35 ~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~p 69 (154)
.-+|||+.||+.++...|+++|++||+|.+|.|.+
T Consensus 31 s~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~ 65 (119)
T 2ad9_A 31 SRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK 65 (119)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEG
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC
Confidence 45899999999999999999999999999999875
No 89
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.61 E-value=6.2e-05 Score=51.49 Aligned_cols=37 Identities=8% Similarity=0.170 Sum_probs=33.2
Q ss_pred cceEEecCCCCCCCHHHHHHHHhccCc-cceEEeccCC
Q 044301 35 RGICYLSRIPPHMDPVKLRQILSQYGE-IQRIYLAPED 71 (154)
Q Consensus 35 ~GVIYlSrIPp~M~p~klR~llsqfGe-I~RIyL~pEd 71 (154)
.--|||+.||+.++...|+++|++||. |..+.+...+
T Consensus 8 ~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~ 45 (109)
T 2dis_A 8 NCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASA 45 (109)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSS
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccC
Confidence 346999999999999999999999999 9999997544
No 90
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=97.61 E-value=5.4e-05 Score=54.25 Aligned_cols=37 Identities=14% Similarity=0.255 Sum_probs=33.2
Q ss_pred CcceEEecCCCCCCCHHHHHHHHhccCccce--EEeccC
Q 044301 34 QRGICYLSRIPPHMDPVKLRQILSQYGEIQR--IYLAPE 70 (154)
Q Consensus 34 k~GVIYlSrIPp~M~p~klR~llsqfGeI~R--IyL~pE 70 (154)
..--|||+.||+.++...|+++|++||.|.. |+|...
T Consensus 22 ~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d 60 (131)
T 2m2b_A 22 ANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKD 60 (131)
T ss_dssp CCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEc
Confidence 3457999999999999999999999999977 898865
No 91
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=97.61 E-value=4.5e-05 Score=53.31 Aligned_cols=34 Identities=26% Similarity=0.373 Sum_probs=30.8
Q ss_pred eEEecCCCCCCCHHHHHHHHhccCc--cceEEeccC
Q 044301 37 ICYLSRIPPHMDPVKLRQILSQYGE--IQRIYLAPE 70 (154)
Q Consensus 37 VIYlSrIPp~M~p~klR~llsqfGe--I~RIyL~pE 70 (154)
-|||+.||+..+...|+++|++||. |..|+|...
T Consensus 11 tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d 46 (95)
T 2lkz_A 11 TIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKD 46 (95)
T ss_dssp EEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCC
T ss_pred EEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEec
Confidence 5999999999999999999999994 678988764
No 92
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=97.61 E-value=5.2e-05 Score=51.34 Aligned_cols=38 Identities=13% Similarity=0.243 Sum_probs=34.1
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHhccCccce--------EEeccC
Q 044301 33 DQRGICYLSRIPPHMDPVKLRQILSQYGEIQR--------IYLAPE 70 (154)
Q Consensus 33 ~k~GVIYlSrIPp~M~p~klR~llsqfGeI~R--------IyL~pE 70 (154)
.....|||+.||..++...|+++|++||.|.. |.+...
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~ 56 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTD 56 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEec
Confidence 34678999999999999999999999999999 888654
No 93
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.61 E-value=5.7e-05 Score=50.51 Aligned_cols=36 Identities=17% Similarity=0.280 Sum_probs=33.3
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHhccCccceEEec
Q 044301 33 DQRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLA 68 (154)
Q Consensus 33 ~k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~ 68 (154)
...-.|||+.||+.++...|+++|++||.|..|.+.
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~ 43 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV 43 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE
Confidence 446789999999999999999999999999999986
No 94
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=97.61 E-value=6.3e-05 Score=49.85 Aligned_cols=36 Identities=8% Similarity=0.128 Sum_probs=33.5
Q ss_pred CcceEEecCCCCCCCHHHHHHHHhccCccceEEecc
Q 044301 34 QRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAP 69 (154)
Q Consensus 34 k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~p 69 (154)
..-.|||+.||+.++...|+++|++||.|..|.+..
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~ 42 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKM 42 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc
Confidence 356799999999999999999999999999999986
No 95
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=97.60 E-value=2.3e-05 Score=56.96 Aligned_cols=37 Identities=16% Similarity=0.235 Sum_probs=34.0
Q ss_pred CcceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 34 QRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 34 k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
..-.|||+.||+.++...|+++|++||+|..|.|...
T Consensus 45 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d 81 (129)
T 2kxn_B 45 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYD 81 (129)
T ss_dssp CSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEec
Confidence 3458999999999999999999999999999999765
No 96
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=97.59 E-value=3.8e-05 Score=51.48 Aligned_cols=34 Identities=15% Similarity=0.237 Sum_probs=31.3
Q ss_pred eEEecCCCCCCCHHHHHHHHhccC--ccceEEeccC
Q 044301 37 ICYLSRIPPHMDPVKLRQILSQYG--EIQRIYLAPE 70 (154)
Q Consensus 37 VIYlSrIPp~M~p~klR~llsqfG--eI~RIyL~pE 70 (154)
-|||+.||..++...|+++|++|| +|..+++...
T Consensus 3 ~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~ 38 (90)
T 3p5t_L 3 ALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFEN 38 (90)
T ss_dssp -CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEEC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEec
Confidence 489999999999999999999999 9999999765
No 97
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=97.59 E-value=3.1e-05 Score=54.63 Aligned_cols=34 Identities=18% Similarity=0.289 Sum_probs=32.1
Q ss_pred eEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 37 ICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 37 VIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
.|||+.||+.++...|+++|++||.|..|+|...
T Consensus 2 ~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~ 35 (166)
T 3md3_A 2 VLYVGNLDKAITEDILKQYFQVGGPIANIKIMID 35 (166)
T ss_dssp EEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECC
T ss_pred EEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEEC
Confidence 4899999999999999999999999999999765
No 98
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.59 E-value=5.4e-05 Score=51.25 Aligned_cols=36 Identities=19% Similarity=0.653 Sum_probs=33.2
Q ss_pred CcceEEecCCCCCCCHHHHHHHHhccCccceEEecc
Q 044301 34 QRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAP 69 (154)
Q Consensus 34 k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~p 69 (154)
..-.|||+.||+.++...|+++|++||+|..|++.+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~ 49 (99)
T 2cpj_A 14 QRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK 49 (99)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec
Confidence 456899999999999999999999999999999863
No 99
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=97.58 E-value=5.5e-05 Score=56.20 Aligned_cols=35 Identities=23% Similarity=0.421 Sum_probs=32.8
Q ss_pred ceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 36 GICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 36 GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
-.|||+.||+.++...|+.+|++||+|..|.|...
T Consensus 73 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~ 107 (165)
T 1rk8_A 73 WILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLD 107 (165)
T ss_dssp EEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEec
Confidence 36999999999999999999999999999999765
No 100
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.56 E-value=5.3e-05 Score=51.51 Aligned_cols=37 Identities=24% Similarity=0.349 Sum_probs=34.2
Q ss_pred CcceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 34 QRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 34 k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
..-.|||+.||+.++...|+++|++||+|..|.|...
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~ 50 (103)
T 2d9p_A 14 QVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME 50 (103)
T ss_dssp SCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC
Confidence 4567999999999999999999999999999999865
No 101
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=97.55 E-value=7.7e-05 Score=50.53 Aligned_cols=34 Identities=18% Similarity=0.293 Sum_probs=32.2
Q ss_pred cceEEecCCCCCCCHHHHHHHHhccCccceEEec
Q 044301 35 RGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLA 68 (154)
Q Consensus 35 ~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~ 68 (154)
.-.|||+.||+.++...|+.+|++||.|..|.+.
T Consensus 27 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~ 60 (101)
T 2la4_A 27 VTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY 60 (101)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE
T ss_pred CCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe
Confidence 4689999999999999999999999999999986
No 102
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.55 E-value=3.8e-05 Score=53.61 Aligned_cols=38 Identities=8% Similarity=0.392 Sum_probs=34.4
Q ss_pred CCcceEEecCCCCCCCHHHHH---HHHhccCccceEEeccC
Q 044301 33 DQRGICYLSRIPPHMDPVKLR---QILSQYGEIQRIYLAPE 70 (154)
Q Consensus 33 ~k~GVIYlSrIPp~M~p~klR---~llsqfGeI~RIyL~pE 70 (154)
...-.|||+.||+.++...|+ ++|++||+|..|++...
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~ 53 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNS 53 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECC
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecC
Confidence 345689999999999999999 99999999999999665
No 103
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=97.54 E-value=7.7e-05 Score=50.51 Aligned_cols=34 Identities=18% Similarity=0.421 Sum_probs=31.9
Q ss_pred eEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 37 ICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 37 VIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
-|||+.||+.++...|+++|++||+|..|.+...
T Consensus 2 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~ 35 (101)
T 2hvz_A 2 KVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN 35 (101)
T ss_dssp EEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC
Confidence 3899999999999999999999999999999765
No 104
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=97.53 E-value=7.3e-05 Score=51.10 Aligned_cols=35 Identities=14% Similarity=0.361 Sum_probs=32.3
Q ss_pred CcceEEecCCCCCCCHHHHHHHHhccCccceEEec
Q 044301 34 QRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLA 68 (154)
Q Consensus 34 k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~ 68 (154)
..-.|||+.||+.++...|+++|++||.|..|++.
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~ 44 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL 44 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE
Confidence 34679999999999999999999999999999886
No 105
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.53 E-value=9.1e-05 Score=51.90 Aligned_cols=37 Identities=11% Similarity=0.125 Sum_probs=33.7
Q ss_pred CcceEEecCCCCCCCHHHHHHHHhccCcc-ceEEeccC
Q 044301 34 QRGICYLSRIPPHMDPVKLRQILSQYGEI-QRIYLAPE 70 (154)
Q Consensus 34 k~GVIYlSrIPp~M~p~klR~llsqfGeI-~RIyL~pE 70 (154)
..-.|||+.||..++...|+++|++||.| ..|+|...
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d 51 (114)
T 2cpy_A 14 AKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVD 51 (114)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCC
T ss_pred CccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEEC
Confidence 45679999999999999999999999999 89998765
No 106
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.52 E-value=1.8e-05 Score=53.32 Aligned_cols=36 Identities=11% Similarity=0.067 Sum_probs=31.6
Q ss_pred CcceEEecCCCCCCCHHHHHHHHhccCccceEEecc
Q 044301 34 QRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAP 69 (154)
Q Consensus 34 k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~p 69 (154)
.+-.|||+.||+.++...|+++|++||.|..+.+..
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~ 49 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLK 49 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEE
Confidence 456899999999999999999999999998665554
No 107
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.52 E-value=7.8e-05 Score=51.43 Aligned_cols=38 Identities=26% Similarity=0.433 Sum_probs=34.6
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 33 DQRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 33 ~k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
...-.|||+.||+.++...|+.+|++||.|..|.|.+.
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~ 60 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE 60 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC
Confidence 45568999999999999999999999999999999764
No 108
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=97.51 E-value=4.8e-05 Score=54.21 Aligned_cols=36 Identities=25% Similarity=0.500 Sum_probs=33.9
Q ss_pred cceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 35 RGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 35 ~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
...|||+.||+.++...|+++|++||.|..+.+...
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~ 122 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLD 122 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCS
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEc
Confidence 568999999999999999999999999999999775
No 109
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=97.49 E-value=8.2e-05 Score=48.80 Aligned_cols=33 Identities=15% Similarity=0.334 Sum_probs=30.4
Q ss_pred eEEecCCCCCC------CHHHHHHHHhccCccceEEecc
Q 044301 37 ICYLSRIPPHM------DPVKLRQILSQYGEIQRIYLAP 69 (154)
Q Consensus 37 VIYlSrIPp~M------~p~klR~llsqfGeI~RIyL~p 69 (154)
.|||+.||+.+ +...|+++|++||.|..|++.+
T Consensus 3 ~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~ 41 (81)
T 2krb_A 3 VIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE 41 (81)
T ss_dssp EEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC
Confidence 69999999999 6799999999999999999873
No 110
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=97.49 E-value=2.7e-05 Score=53.57 Aligned_cols=35 Identities=11% Similarity=0.181 Sum_probs=32.6
Q ss_pred ceEEecCCCC------CCCHHHHHHHHhccCccceEEeccC
Q 044301 36 GICYLSRIPP------HMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 36 GVIYlSrIPp------~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
-.|||+.||. .++...|+++|++||.|..|+|...
T Consensus 7 ~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d 47 (100)
T 3ns6_A 7 QYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPID 47 (100)
T ss_dssp GEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEE
T ss_pred cEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEc
Confidence 4799999999 9999999999999999999999765
No 111
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=97.48 E-value=0.00011 Score=50.89 Aligned_cols=35 Identities=23% Similarity=0.542 Sum_probs=32.7
Q ss_pred cceEEecCCCCCCCHHHHHHHHhccCccceEEecc
Q 044301 35 RGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAP 69 (154)
Q Consensus 35 ~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~p 69 (154)
.-.|||+.||+.++...|+++|++||.|..|++..
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~ 42 (115)
T 3lqv_A 8 NRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGN 42 (115)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEee
Confidence 45899999999999999999999999999999974
No 112
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=97.48 E-value=7.3e-05 Score=53.50 Aligned_cols=36 Identities=11% Similarity=0.439 Sum_probs=33.9
Q ss_pred cceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 35 RGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 35 ~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
.-.|||+.||+.++...|+++|++||.|..+++...
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~ 129 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKD 129 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEEC
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEec
Confidence 578999999999999999999999999999999765
No 113
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.47 E-value=0.00011 Score=50.62 Aligned_cols=38 Identities=13% Similarity=0.238 Sum_probs=33.8
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHhccCccc--------eEEeccC
Q 044301 33 DQRGICYLSRIPPHMDPVKLRQILSQYGEIQ--------RIYLAPE 70 (154)
Q Consensus 33 ~k~GVIYlSrIPp~M~p~klR~llsqfGeI~--------RIyL~pE 70 (154)
...-.|||+.||+.++...|+++|++||.|. +|+|...
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~ 58 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLD 58 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBC
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEe
Confidence 3456899999999999999999999999998 7888764
No 114
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=97.47 E-value=6.5e-05 Score=54.87 Aligned_cols=37 Identities=22% Similarity=0.387 Sum_probs=34.2
Q ss_pred CcceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 34 QRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 34 k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
..-.|||+.||+.++...|+++|++||.|..|.+...
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~ 139 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTD 139 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEEC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeec
Confidence 3468999999999999999999999999999999875
No 115
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=97.46 E-value=9.3e-05 Score=52.76 Aligned_cols=37 Identities=14% Similarity=0.309 Sum_probs=34.2
Q ss_pred CcceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 34 QRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 34 k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
....|||+.||+.++...|+++|++||.|.++.+.+.
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~ 130 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRG 130 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEEC
Confidence 4568999999999999999999999999999999765
No 116
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=97.46 E-value=0.00013 Score=53.19 Aligned_cols=36 Identities=17% Similarity=0.454 Sum_probs=33.3
Q ss_pred cceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 35 RGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 35 ~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
.-.|||+.||+.++...|+++|++||.|..|.|...
T Consensus 47 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~ 82 (135)
T 2lea_A 47 MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRD 82 (135)
T ss_dssp CCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEec
Confidence 457999999999999999999999999999999764
No 117
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=97.45 E-value=0.00012 Score=49.64 Aligned_cols=35 Identities=23% Similarity=0.489 Sum_probs=32.1
Q ss_pred CCcceEEecCCCC-CCCHHHHHHHHhccCccceEEe
Q 044301 33 DQRGICYLSRIPP-HMDPVKLRQILSQYGEIQRIYL 67 (154)
Q Consensus 33 ~k~GVIYlSrIPp-~M~p~klR~llsqfGeI~RIyL 67 (154)
...-.|||+.||+ .++...|+++|++||.|..|.+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i 43 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI 43 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE
Confidence 4456899999998 9999999999999999999999
No 118
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=97.45 E-value=0.00018 Score=53.21 Aligned_cols=39 Identities=15% Similarity=0.369 Sum_probs=35.9
Q ss_pred cCCcceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 32 ADQRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 32 ~~k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
....-.|||+.||..++...|+++|++||.|.+|++...
T Consensus 122 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~ 160 (216)
T 2qfj_A 122 ARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARD 160 (216)
T ss_dssp HTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEEC
T ss_pred cCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEec
Confidence 356789999999999999999999999999999999875
No 119
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.45 E-value=0.00013 Score=49.77 Aligned_cols=36 Identities=14% Similarity=0.306 Sum_probs=33.1
Q ss_pred CcceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 34 QRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 34 k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
.+-.|||+.||+.++...|+++|++|| |..|+|...
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~ 49 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPRE 49 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecC
Confidence 456899999999999999999999999 999999765
No 120
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.44 E-value=0.00013 Score=50.49 Aligned_cols=35 Identities=14% Similarity=0.191 Sum_probs=32.4
Q ss_pred cceEEecCCCCCCCHHHHHHHHhccCccceEEecc
Q 044301 35 RGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAP 69 (154)
Q Consensus 35 ~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~p 69 (154)
.--|||+.||..++...|+++|++||+|..|.|..
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~ 49 (108)
T 1x4c_A 15 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYR 49 (108)
T ss_dssp CCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEET
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEec
Confidence 45799999999999999999999999999999865
No 121
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.44 E-value=0.00016 Score=48.63 Aligned_cols=32 Identities=16% Similarity=0.399 Sum_probs=29.7
Q ss_pred CcceEEecCCCCCCCHHHHHHHHhccCccceE
Q 044301 34 QRGICYLSRIPPHMDPVKLRQILSQYGEIQRI 65 (154)
Q Consensus 34 k~GVIYlSrIPp~M~p~klR~llsqfGeI~RI 65 (154)
..--|||+.||+.++...|+.+|++||.|.+|
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v 38 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV 38 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE
Confidence 34579999999999999999999999999988
No 122
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=97.44 E-value=7.5e-05 Score=53.09 Aligned_cols=38 Identities=18% Similarity=0.417 Sum_probs=34.6
Q ss_pred CcceEEecCCCCCCCHHHHHHHHhccCccceEEeccCC
Q 044301 34 QRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPED 71 (154)
Q Consensus 34 k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pEd 71 (154)
..-.|||+.||+.++...|+++|++||.|..+.+.+..
T Consensus 88 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~ 125 (168)
T 1b7f_A 88 KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDK 125 (168)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECT
T ss_pred CCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcC
Confidence 45689999999999999999999999999999997753
No 123
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=97.44 E-value=0.00016 Score=49.96 Aligned_cols=32 Identities=13% Similarity=0.378 Sum_probs=31.0
Q ss_pred ceEEecCCCCC-CCHHHHHHHHhccCccceEEe
Q 044301 36 GICYLSRIPPH-MDPVKLRQILSQYGEIQRIYL 67 (154)
Q Consensus 36 GVIYlSrIPp~-M~p~klR~llsqfGeI~RIyL 67 (154)
-.|||+.||+. ++...|+++|++||.|..|.+
T Consensus 28 ~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i 60 (110)
T 1wf1_A 28 SRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV 60 (110)
T ss_dssp SEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE
T ss_pred cEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE
Confidence 58999999999 999999999999999999999
No 124
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=97.43 E-value=7.9e-05 Score=52.53 Aligned_cols=37 Identities=8% Similarity=0.076 Sum_probs=34.2
Q ss_pred CcceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 34 QRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 34 k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
..-.|||+.||+.++...|+++|++||.|.++++...
T Consensus 86 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~ 122 (166)
T 3md3_A 86 DTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWD 122 (166)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEEC
T ss_pred CCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEec
Confidence 3568999999999999999999999999999999875
No 125
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=97.43 E-value=0.00014 Score=49.85 Aligned_cols=35 Identities=23% Similarity=0.492 Sum_probs=32.6
Q ss_pred CCcceEEecCCCC-CCCHHHHHHHHhccCccceEEe
Q 044301 33 DQRGICYLSRIPP-HMDPVKLRQILSQYGEIQRIYL 67 (154)
Q Consensus 33 ~k~GVIYlSrIPp-~M~p~klR~llsqfGeI~RIyL 67 (154)
...-.|||+.||+ .++...|+++|++||.|..|.+
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i 55 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI 55 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE
Confidence 4467899999998 9999999999999999999999
No 126
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=97.42 E-value=8.9e-05 Score=52.30 Aligned_cols=37 Identities=30% Similarity=0.485 Sum_probs=34.0
Q ss_pred CcceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 34 QRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 34 k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
....|||+.||+.++...|+++|++||.|..+++...
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~ 123 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVD 123 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEec
Confidence 3467999999999999999999999999999999765
No 127
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.41 E-value=0.00014 Score=50.75 Aligned_cols=38 Identities=26% Similarity=0.357 Sum_probs=34.9
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 33 DQRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 33 ~k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
...-.|||+.||+.++...|+++|++||+|..|.+...
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~ 64 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN 64 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCB
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEEC
Confidence 45678999999999999999999999999999999764
No 128
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=97.40 E-value=0.00011 Score=57.48 Aligned_cols=34 Identities=18% Similarity=0.136 Sum_probs=31.3
Q ss_pred cceEEecCCCCCCCHHHHHHHHhccCccceEEec
Q 044301 35 RGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLA 68 (154)
Q Consensus 35 ~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~ 68 (154)
.=.|||++||..++...|+++|++||+|.+|++.
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~ 79 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITF 79 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEE
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEE
Confidence 3458999999999999999999999999999994
No 129
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=97.38 E-value=0.00015 Score=50.15 Aligned_cols=34 Identities=15% Similarity=0.330 Sum_probs=31.4
Q ss_pred cceEEecCCCCCC------CHHHHHHHHhccCccceEEec
Q 044301 35 RGICYLSRIPPHM------DPVKLRQILSQYGEIQRIYLA 68 (154)
Q Consensus 35 ~GVIYlSrIPp~M------~p~klR~llsqfGeI~RIyL~ 68 (154)
.-.|||+.||..+ +...|+++|++||.|..|++.
T Consensus 15 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~ 54 (105)
T 2nlw_A 15 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP 54 (105)
T ss_dssp CSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC
T ss_pred CCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee
Confidence 4589999999999 679999999999999999987
No 130
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=97.38 E-value=0.0001 Score=50.43 Aligned_cols=37 Identities=14% Similarity=0.302 Sum_probs=32.1
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 33 DQRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 33 ~k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
...-.|||+.||..++...|+++|++|| |..|.+...
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~ 53 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPRE 53 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEec
Confidence 3456899999999999999999999999 999999765
No 131
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=97.38 E-value=0.00011 Score=53.31 Aligned_cols=38 Identities=13% Similarity=0.349 Sum_probs=34.6
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 33 DQRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 33 ~k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
...-.|||+.||+.++...|+++|++||+|..|++...
T Consensus 71 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~ 108 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN 108 (150)
T ss_dssp TTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC
Confidence 34678999999999999999999999999999999764
No 132
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.37 E-value=0.00018 Score=50.35 Aligned_cols=35 Identities=11% Similarity=0.409 Sum_probs=30.8
Q ss_pred cceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 35 RGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 35 ~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
.--|||+.||+.++...|+++|++||+|. +.+...
T Consensus 8 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~ 42 (114)
T 2dnl_A 8 SRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHK 42 (114)
T ss_dssp CCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTS
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeec
Confidence 45699999999999999999999999999 766543
No 133
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=97.37 E-value=0.0002 Score=50.22 Aligned_cols=37 Identities=11% Similarity=0.331 Sum_probs=34.3
Q ss_pred cCCcceEEecCCCCCCCHHHHHHHHhccCccceEEec
Q 044301 32 ADQRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLA 68 (154)
Q Consensus 32 ~~k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~ 68 (154)
....-.|||+.||+.++...|+.+|++||.|..|.+.
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~ 64 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL 64 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE
Confidence 4567799999999999999999999999999999987
No 134
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=97.36 E-value=0.00019 Score=47.92 Aligned_cols=35 Identities=20% Similarity=0.478 Sum_probs=32.4
Q ss_pred CcceEEecCCCCCCCHHHHH----HHHhccCccceEEec
Q 044301 34 QRGICYLSRIPPHMDPVKLR----QILSQYGEIQRIYLA 68 (154)
Q Consensus 34 k~GVIYlSrIPp~M~p~klR----~llsqfGeI~RIyL~ 68 (154)
..-.|||+.||+.++...|+ ++|++||.|..|++.
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~ 45 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVS 45 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEE
Confidence 34689999999999999999 999999999999986
No 135
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=97.36 E-value=0.00016 Score=51.53 Aligned_cols=35 Identities=20% Similarity=0.457 Sum_probs=32.8
Q ss_pred ceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 36 GICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 36 GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
--|||+.||+.++...|+++|++||+|..|++...
T Consensus 4 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~ 38 (175)
T 3nmr_A 4 IKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRD 38 (175)
T ss_dssp EEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEec
Confidence 46999999999999999999999999999999765
No 136
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=97.35 E-value=0.00015 Score=52.25 Aligned_cols=36 Identities=11% Similarity=0.086 Sum_probs=32.7
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHhccC-ccceEEec
Q 044301 33 DQRGICYLSRIPPHMDPVKLRQILSQYG-EIQRIYLA 68 (154)
Q Consensus 33 ~k~GVIYlSrIPp~M~p~klR~llsqfG-eI~RIyL~ 68 (154)
...--|||+.||..++...|+++|++|| +|..+.+.
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~ 62 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVN 62 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEE
Confidence 4455899999999999999999999999 99999884
No 137
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=97.32 E-value=0.00021 Score=52.26 Aligned_cols=38 Identities=13% Similarity=0.459 Sum_probs=34.9
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 33 DQRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 33 ~k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
...-.|||+.||+.++...|+++|++||.|..|++...
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~ 149 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKD 149 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeec
Confidence 34579999999999999999999999999999999765
No 138
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.32 E-value=0.00021 Score=49.21 Aligned_cols=38 Identities=16% Similarity=0.225 Sum_probs=33.4
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHhccCccce-EEeccC
Q 044301 33 DQRGICYLSRIPPHMDPVKLRQILSQYGEIQR-IYLAPE 70 (154)
Q Consensus 33 ~k~GVIYlSrIPp~M~p~klR~llsqfGeI~R-IyL~pE 70 (154)
...-.|||+.||...+...|+++|++||.|.. |.|...
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~ 51 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD 51 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC
Confidence 34678999999999999999999999999987 877654
No 139
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=97.31 E-value=0.00029 Score=53.83 Aligned_cols=36 Identities=6% Similarity=0.274 Sum_probs=33.6
Q ss_pred cceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 35 RGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 35 ~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
.-.|||+.||+.++...|+++|++||+|..|+|...
T Consensus 88 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d 123 (177)
T 2f3j_A 88 GAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYD 123 (177)
T ss_dssp CEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC
Confidence 458999999999999999999999999999999765
No 140
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=97.30 E-value=0.00015 Score=56.96 Aligned_cols=40 Identities=13% Similarity=0.259 Sum_probs=33.5
Q ss_pred hcCCcceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 31 KADQRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 31 k~~k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
.......|||+.||+.++...|+++|++||+|..|+|.+.
T Consensus 37 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~ 76 (292)
T 2ghp_A 37 RNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADS 76 (292)
T ss_dssp -----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC
Confidence 3456789999999999999999999999999999999774
No 141
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.30 E-value=0.00015 Score=48.33 Aligned_cols=34 Identities=18% Similarity=0.289 Sum_probs=30.5
Q ss_pred CcceEEecCCCCCCCHHHHHHHHhccCc-cceEEe
Q 044301 34 QRGICYLSRIPPHMDPVKLRQILSQYGE-IQRIYL 67 (154)
Q Consensus 34 k~GVIYlSrIPp~M~p~klR~llsqfGe-I~RIyL 67 (154)
..--|||+.||+.++...|+++|++||. |..+.+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~ 41 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL 41 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE
Confidence 3457999999999999999999999999 777777
No 142
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.29 E-value=0.00028 Score=47.72 Aligned_cols=35 Identities=11% Similarity=0.215 Sum_probs=31.3
Q ss_pred CcceEEecCCCCCCCHHHHHHHHhcc--CccceEEec
Q 044301 34 QRGICYLSRIPPHMDPVKLRQILSQY--GEIQRIYLA 68 (154)
Q Consensus 34 k~GVIYlSrIPp~M~p~klR~llsqf--GeI~RIyL~ 68 (154)
..-.|||+.||+.++...|+++|++| |.|.+|.+.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~ 50 (99)
T 2cpd_A 14 SVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI 50 (99)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC
T ss_pred CcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe
Confidence 45689999999999999999999999 889888753
No 143
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.28 E-value=0.00019 Score=48.87 Aligned_cols=36 Identities=14% Similarity=0.266 Sum_probs=33.0
Q ss_pred CcceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 34 QRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 34 k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
..-.|||+.||+.++...|+++|++|| |..|++...
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~ 49 (103)
T 2dng_A 14 PPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRD 49 (103)
T ss_dssp SCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEEC
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeec
Confidence 456899999999999999999999997 999999865
No 144
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=97.27 E-value=0.00018 Score=54.05 Aligned_cols=36 Identities=17% Similarity=0.324 Sum_probs=33.0
Q ss_pred cceEEecCCCCCCCHHHHHHHHhccC--ccceEEeccC
Q 044301 35 RGICYLSRIPPHMDPVKLRQILSQYG--EIQRIYLAPE 70 (154)
Q Consensus 35 ~GVIYlSrIPp~M~p~klR~llsqfG--eI~RIyL~pE 70 (154)
.--|||+.||..++...|+++|++|| +|..|+|...
T Consensus 55 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d 92 (156)
T 3n9u_C 55 RAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAEN 92 (156)
T ss_dssp -CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEec
Confidence 45899999999999999999999999 9999999765
No 145
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=97.20 E-value=0.00028 Score=51.81 Aligned_cols=34 Identities=24% Similarity=0.419 Sum_probs=30.2
Q ss_pred cceEEecCCCCCCCHHHHH----HHHhccCccceEEec
Q 044301 35 RGICYLSRIPPHMDPVKLR----QILSQYGEIQRIYLA 68 (154)
Q Consensus 35 ~GVIYlSrIPp~M~p~klR----~llsqfGeI~RIyL~ 68 (154)
.-.|||+.||+.++...|+ ++|++||+|..|++.
T Consensus 29 ~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~ 66 (127)
T 2a3j_A 29 SQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVD 66 (127)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEec
Confidence 3579999999999998866 799999999999884
No 146
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=96.28 E-value=5.3e-05 Score=52.81 Aligned_cols=37 Identities=14% Similarity=0.245 Sum_probs=32.4
Q ss_pred CcceEEecCCCCCCCHHHHHHHHhccCccce--------EEeccC
Q 044301 34 QRGICYLSRIPPHMDPVKLRQILSQYGEIQR--------IYLAPE 70 (154)
Q Consensus 34 k~GVIYlSrIPp~M~p~klR~llsqfGeI~R--------IyL~pE 70 (154)
..-.|||+.||..++...|+++|++||.|.. |+|...
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~ 50 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTD 50 (116)
Confidence 3567999999999999999999999999988 776654
No 147
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=97.18 E-value=0.00026 Score=48.98 Aligned_cols=38 Identities=11% Similarity=-0.022 Sum_probs=34.0
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHhccCc---cceEEeccC
Q 044301 33 DQRGICYLSRIPPHMDPVKLRQILSQYGE---IQRIYLAPE 70 (154)
Q Consensus 33 ~k~GVIYlSrIPp~M~p~klR~llsqfGe---I~RIyL~pE 70 (154)
...-.|||+.||...+...|+++|++||. |..|+|...
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~ 49 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLN 49 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEEC
Confidence 34678999999999999999999999998 889999754
No 148
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=97.14 E-value=0.00026 Score=49.88 Aligned_cols=35 Identities=14% Similarity=0.191 Sum_probs=31.8
Q ss_pred cceEEecCCCCCCCHHHHHHHHhccCccceEEecc
Q 044301 35 RGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAP 69 (154)
Q Consensus 35 ~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~p 69 (154)
.--|||+.||..++...|+++|++||+|..|.|..
T Consensus 16 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~ 50 (115)
T 3beg_B 16 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYR 50 (115)
T ss_dssp -CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECT
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEec
Confidence 45799999999999999999999999999999854
No 149
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=97.10 E-value=0.00033 Score=55.51 Aligned_cols=36 Identities=17% Similarity=0.226 Sum_probs=32.6
Q ss_pred cceEEecCCCCCCCHHHHHHHHhccC--ccceEEeccC
Q 044301 35 RGICYLSRIPPHMDPVKLRQILSQYG--EIQRIYLAPE 70 (154)
Q Consensus 35 ~GVIYlSrIPp~M~p~klR~llsqfG--eI~RIyL~pE 70 (154)
+--|||+.||..++...|+++|++|| +|.+|.|...
T Consensus 68 ~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d 105 (229)
T 3q2s_C 68 RIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFEN 105 (229)
T ss_dssp -CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEEC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEec
Confidence 34599999999999999999999999 9999999764
No 150
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=97.10 E-value=0.00036 Score=53.84 Aligned_cols=37 Identities=14% Similarity=0.311 Sum_probs=33.9
Q ss_pred CcceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 34 QRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 34 k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
....||++.||+..+...|+++|++||.|..|++...
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~ 144 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRT 144 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEEC
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEEC
Confidence 3567999999999999999999999999999998763
No 151
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=97.09 E-value=0.00046 Score=53.46 Aligned_cols=34 Identities=9% Similarity=0.319 Sum_probs=31.8
Q ss_pred ceEEecCCC-CCCCHHHHHHHHhccCccceEEecc
Q 044301 36 GICYLSRIP-PHMDPVKLRQILSQYGEIQRIYLAP 69 (154)
Q Consensus 36 GVIYlSrIP-p~M~p~klR~llsqfGeI~RIyL~p 69 (154)
-+||++.|| ..++...|+.+|++||+|.+|.+..
T Consensus 5 ~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~ 39 (205)
T 3tyt_A 5 PVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMK 39 (205)
T ss_dssp SEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECT
T ss_pred CEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEec
Confidence 489999999 6999999999999999999999965
No 152
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.09 E-value=0.00028 Score=49.09 Aligned_cols=37 Identities=8% Similarity=0.137 Sum_probs=32.6
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 33 DQRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 33 ~k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
...-.|||+.||..++...|+++|++||.| +|+|...
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d 49 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIG 49 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEEC
Confidence 345689999999999999999999999965 9998764
No 153
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=97.09 E-value=0.00051 Score=50.77 Aligned_cols=35 Identities=23% Similarity=0.516 Sum_probs=32.7
Q ss_pred ceEEecCCCC-CCCHHHHHHHHhccCccceEEeccC
Q 044301 36 GICYLSRIPP-HMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 36 GVIYlSrIPp-~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
-.|||+.||+ .++...|+++|++||.|..|.+...
T Consensus 4 ~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~ 39 (198)
T 1qm9_A 4 SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFN 39 (198)
T ss_dssp CEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTT
T ss_pred cEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeC
Confidence 4799999999 9999999999999999999999764
No 154
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.08 E-value=0.00044 Score=51.17 Aligned_cols=32 Identities=16% Similarity=0.156 Sum_probs=30.0
Q ss_pred eEEecCCCCCCCHHHHHHHHhccCccceEEec
Q 044301 37 ICYLSRIPPHMDPVKLRQILSQYGEIQRIYLA 68 (154)
Q Consensus 37 VIYlSrIPp~M~p~klR~llsqfGeI~RIyL~ 68 (154)
.|||+.||..++...|+++|++||+|.+|.+.
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~ 58 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIF 58 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEE
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEE
Confidence 37899999999999999999999999999984
No 155
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.08 E-value=0.00073 Score=49.44 Aligned_cols=39 Identities=13% Similarity=0.168 Sum_probs=34.4
Q ss_pred cCCcceEEecCCCCCCCHHHHHHHHhccCcc----ceEEeccC
Q 044301 32 ADQRGICYLSRIPPHMDPVKLRQILSQYGEI----QRIYLAPE 70 (154)
Q Consensus 32 ~~k~GVIYlSrIPp~M~p~klR~llsqfGeI----~RIyL~pE 70 (154)
......|||+.||...+...|+++|++||.| ..|+|...
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d 62 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY 62 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC
Confidence 3567899999999999999999999999975 68998764
No 156
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.06 E-value=0.00011 Score=52.09 Aligned_cols=34 Identities=9% Similarity=0.173 Sum_probs=30.0
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHhccCccceEE
Q 044301 33 DQRGICYLSRIPPHMDPVKLRQILSQYGEIQRIY 66 (154)
Q Consensus 33 ~k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIy 66 (154)
...-.|||+.||..++...|+.+|++||.|..+.
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~ 56 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSI 56 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceE
Confidence 3457899999999999999999999999997633
No 157
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.06 E-value=0.00037 Score=49.43 Aligned_cols=37 Identities=11% Similarity=0.091 Sum_probs=33.2
Q ss_pred CcceEEecCCCCCCCHHHHHHHHhccCc---cceEEeccC
Q 044301 34 QRGICYLSRIPPHMDPVKLRQILSQYGE---IQRIYLAPE 70 (154)
Q Consensus 34 k~GVIYlSrIPp~M~p~klR~llsqfGe---I~RIyL~pE 70 (154)
..-.|||+.||..++...|+++|++||. |..|+|...
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~ 55 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYT 55 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEEC
Confidence 3457999999999999999999999999 889998764
No 158
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=97.05 E-value=0.00049 Score=49.54 Aligned_cols=35 Identities=17% Similarity=0.172 Sum_probs=33.2
Q ss_pred cceEEecCCCCCCCHHHHHHHHhccCccceEEecc
Q 044301 35 RGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAP 69 (154)
Q Consensus 35 ~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~p 69 (154)
.+-||++.|++.++...|+.||++||+|..++|..
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~ 41 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL 41 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC
Confidence 57899999999999999999999999999999965
No 159
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.04 E-value=0.00045 Score=46.68 Aligned_cols=29 Identities=14% Similarity=0.133 Sum_probs=26.9
Q ss_pred CcceEEecCCCCCCCHHHHHHHHhccCcc
Q 044301 34 QRGICYLSRIPPHMDPVKLRQILSQYGEI 62 (154)
Q Consensus 34 k~GVIYlSrIPp~M~p~klR~llsqfGeI 62 (154)
..-.|||+.||+.++...|+++|++||.|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v 42 (101)
T 2fc9_A 14 ESKTLVLSNLSYSATEETLQEVFEKATFI 42 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHCSSCSEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCEE
Confidence 45689999999999999999999999988
No 160
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.01 E-value=0.00059 Score=45.25 Aligned_cols=37 Identities=11% Similarity=0.094 Sum_probs=33.7
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 33 DQRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 33 ~k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
...-.|||+.||..++...|+++|++| .|..|+|...
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~ 44 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN 44 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC
Confidence 346789999999999999999999999 9999999765
No 161
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.99 E-value=0.00046 Score=46.56 Aligned_cols=30 Identities=17% Similarity=0.379 Sum_probs=27.8
Q ss_pred CcceEEecCCCCCCCHHHHHHHHhccCccc
Q 044301 34 QRGICYLSRIPPHMDPVKLRQILSQYGEIQ 63 (154)
Q Consensus 34 k~GVIYlSrIPp~M~p~klR~llsqfGeI~ 63 (154)
..-.|||+.||+.++...|+++|++||.|.
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~ 47 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELGSVP 47 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTTCCC
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcCCEE
Confidence 456899999999999999999999999995
No 162
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=96.98 E-value=0.0013 Score=57.03 Aligned_cols=35 Identities=26% Similarity=0.422 Sum_probs=32.9
Q ss_pred ceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 36 GICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 36 GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
-.|||+.||+.++...|+++|++||.|..|.|...
T Consensus 103 ~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d 137 (437)
T 3pgw_S 103 KTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYS 137 (437)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeecc
Confidence 58999999999999999999999999999999754
No 163
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=96.98 E-value=0.00061 Score=51.22 Aligned_cols=34 Identities=18% Similarity=0.157 Sum_probs=31.3
Q ss_pred ceEEecCCCCCCCHHHHHHHHhccCccceEEecc
Q 044301 36 GICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAP 69 (154)
Q Consensus 36 GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~p 69 (154)
=-|||++||..++...|+++|++||+|.+|++..
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~ 62 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFT 62 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEE
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEc
Confidence 4578999999999999999999999999999864
No 164
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=96.96 E-value=0.00049 Score=53.74 Aligned_cols=37 Identities=14% Similarity=0.534 Sum_probs=33.7
Q ss_pred CcceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 34 QRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 34 k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
....|||+.||+.++...|+++|++||.|..+++...
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~ 130 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYS 130 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEee
Confidence 3568999999999999999999999999999998654
No 165
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.94 E-value=0.00068 Score=50.74 Aligned_cols=37 Identities=19% Similarity=0.082 Sum_probs=33.6
Q ss_pred CcceEEecCCCCC-CCHHHHHHHHhccCccceEEeccC
Q 044301 34 QRGICYLSRIPPH-MDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 34 k~GVIYlSrIPp~-M~p~klR~llsqfGeI~RIyL~pE 70 (154)
+--||||+.||.. .+...|+.+|++||+|.-|-++.-
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g 54 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRG 54 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTT
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecC
Confidence 3458999999999 999999999999999999998775
No 166
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=96.92 E-value=0.00099 Score=43.40 Aligned_cols=35 Identities=11% Similarity=0.245 Sum_probs=31.3
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcc----C-------ccceEEecc
Q 044301 35 RGICYLSRIPPHMDPVKLRQILSQY----G-------EIQRIYLAP 69 (154)
Q Consensus 35 ~GVIYlSrIPp~M~p~klR~llsqf----G-------eI~RIyL~p 69 (154)
.--|||+.||+.++...|+++|++| | .|..+++..
T Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~ 51 (87)
T 2hzc_A 6 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ 51 (87)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC
Confidence 4569999999999999999999999 8 888888763
No 167
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=96.88 E-value=0.0012 Score=48.64 Aligned_cols=36 Identities=22% Similarity=0.377 Sum_probs=33.6
Q ss_pred cceEEecCCCCCCCHHHHHHHHhccC-ccceEEeccC
Q 044301 35 RGICYLSRIPPHMDPVKLRQILSQYG-EIQRIYLAPE 70 (154)
Q Consensus 35 ~GVIYlSrIPp~M~p~klR~llsqfG-eI~RIyL~pE 70 (154)
.-.|||+.||+.++...|+++|++|| .|..|.+.+.
T Consensus 120 ~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~ 156 (198)
T 1qm9_A 120 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK 156 (198)
T ss_dssp CCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC
Confidence 56799999999999999999999999 9999999774
No 168
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=96.88 E-value=0.0009 Score=51.50 Aligned_cols=37 Identities=22% Similarity=0.482 Sum_probs=33.9
Q ss_pred CcceEEecCCCC-CCCHHHHHHHHhccCccceEEeccC
Q 044301 34 QRGICYLSRIPP-HMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 34 k~GVIYlSrIPp-~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
..-.|||+.||+ .++...|+++|++||.|..|.|...
T Consensus 33 ~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~ 70 (229)
T 2adc_A 33 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFN 70 (229)
T ss_dssp CCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCT
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEEC
Confidence 345899999999 9999999999999999999999864
No 169
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=96.87 E-value=0.0012 Score=49.35 Aligned_cols=37 Identities=8% Similarity=0.082 Sum_probs=32.3
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 33 DQRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 33 ~k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
...-.|||+.||...+...|+++|++|| |..|+|...
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d 80 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIG 80 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEC
Confidence 3456899999999999999999999999 669998764
No 170
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=96.80 E-value=0.00073 Score=50.22 Aligned_cols=37 Identities=11% Similarity=0.053 Sum_probs=33.4
Q ss_pred CcceEEecCCCCCCCHHHHHHHHhccCc---cceEEeccC
Q 044301 34 QRGICYLSRIPPHMDPVKLRQILSQYGE---IQRIYLAPE 70 (154)
Q Consensus 34 k~GVIYlSrIPp~M~p~klR~llsqfGe---I~RIyL~pE 70 (154)
..-.|||+.||...+...|+++|++||. |..|+|...
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d 82 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYT 82 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEEC
Confidence 3457999999999999999999999999 889999764
No 171
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.80 E-value=0.00031 Score=48.41 Aligned_cols=33 Identities=15% Similarity=0.343 Sum_probs=29.0
Q ss_pred CcceEEecCCCCCCCHHHHHHHHhccCccceEE
Q 044301 34 QRGICYLSRIPPHMDPVKLRQILSQYGEIQRIY 66 (154)
Q Consensus 34 k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIy 66 (154)
..-.|||+.||+.++...|+++|++||.|..+.
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~ 56 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPP 56 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceE
Confidence 346899999999999999999999999996443
No 172
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=96.79 E-value=0.00082 Score=52.05 Aligned_cols=35 Identities=9% Similarity=0.115 Sum_probs=32.4
Q ss_pred ceEEecCCCCCCCHHHHHHHHhccCcc--ceEEeccC
Q 044301 36 GICYLSRIPPHMDPVKLRQILSQYGEI--QRIYLAPE 70 (154)
Q Consensus 36 GVIYlSrIPp~M~p~klR~llsqfGeI--~RIyL~pE 70 (154)
-.|||+.||+.++...|+++|++||.| .++.+.+.
T Consensus 124 ~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~ 160 (205)
T 3tyt_A 124 NVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSG 160 (205)
T ss_dssp SEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSC
T ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcC
Confidence 379999999999999999999999999 89988765
No 173
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=96.76 E-value=0.0013 Score=51.35 Aligned_cols=35 Identities=20% Similarity=0.503 Sum_probs=32.6
Q ss_pred ceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 36 GICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 36 GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
-+|||+.||+.++...|+++|++||.|.+|.|.+.
T Consensus 208 ~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~ 242 (282)
T 3pgw_A 208 HILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPG 242 (282)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecC
Confidence 46999999999999999999999999999999853
No 174
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.75 E-value=0.00089 Score=49.23 Aligned_cols=36 Identities=11% Similarity=0.237 Sum_probs=32.5
Q ss_pred CcceEEe--cCCCCCCCHHHHHHHHhccCccceEEecc
Q 044301 34 QRGICYL--SRIPPHMDPVKLRQILSQYGEIQRIYLAP 69 (154)
Q Consensus 34 k~GVIYl--SrIPp~M~p~klR~llsqfGeI~RIyL~p 69 (154)
..-.||+ +.||..++...|+++|++||+|.+|++.+
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~ 61 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP 61 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC
Confidence 3567999 88999999999999999999999999853
No 175
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=96.74 E-value=0.00073 Score=45.07 Aligned_cols=32 Identities=9% Similarity=0.150 Sum_probs=29.3
Q ss_pred CcceEEecCCCCCCCHHHHHHHHhccCccceE
Q 044301 34 QRGICYLSRIPPHMDPVKLRQILSQYGEIQRI 65 (154)
Q Consensus 34 k~GVIYlSrIPp~M~p~klR~llsqfGeI~RI 65 (154)
..-.|||+.||+.++...|+++|++||.|..+
T Consensus 15 ~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~ 46 (96)
T 1fjc_A 15 AARTLLAKNLSFNITEDELKEVFEDALEIRLV 46 (96)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHHCSEEEECCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe
Confidence 45689999999999999999999999998776
No 176
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=96.71 E-value=0.0012 Score=51.92 Aligned_cols=37 Identities=16% Similarity=0.339 Sum_probs=34.2
Q ss_pred CcceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 34 QRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 34 k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
....|||+.||+.++...|+++|++||.|.+|.+...
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~ 131 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD 131 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC
Confidence 3568999999999999999999999999999999875
No 177
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=96.70 E-value=0.0011 Score=47.62 Aligned_cols=32 Identities=16% Similarity=0.338 Sum_probs=29.1
Q ss_pred CcceEEecCCCCCCCHHHHHHHHhccCccceE
Q 044301 34 QRGICYLSRIPPHMDPVKLRQILSQYGEIQRI 65 (154)
Q Consensus 34 k~GVIYlSrIPp~M~p~klR~llsqfGeI~RI 65 (154)
..-.|||+.||+.++...|+.+|++||.|..+
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~ 75 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSE 75 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccc
Confidence 34579999999999999999999999999874
No 178
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=96.69 E-value=0.0012 Score=43.86 Aligned_cols=32 Identities=13% Similarity=0.391 Sum_probs=30.3
Q ss_pred cceEEecCCCCCCCHHHHHHHHhccCccceEEe
Q 044301 35 RGICYLSRIPPHMDPVKLRQILSQYGEIQRIYL 67 (154)
Q Consensus 35 ~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL 67 (154)
.--|||+.||+.++...|+++|++| +|..+++
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i 36 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYV 36 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEE
Confidence 4579999999999999999999999 9999999
No 179
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=96.68 E-value=0.0014 Score=51.42 Aligned_cols=37 Identities=16% Similarity=0.533 Sum_probs=33.2
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHhccCccceEEecc
Q 044301 33 DQRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAP 69 (154)
Q Consensus 33 ~k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~p 69 (154)
...-.|||+.||+.++...|+.+|++||.|..|++.+
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~ 56 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR 56 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC
Confidence 3445899999999999999999999999999999953
No 180
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=96.64 E-value=0.00071 Score=45.68 Aligned_cols=31 Identities=10% Similarity=0.128 Sum_probs=28.6
Q ss_pred CcceEEecCCCCCCCHHHHHHHHhccCccce
Q 044301 34 QRGICYLSRIPPHMDPVKLRQILSQYGEIQR 64 (154)
Q Consensus 34 k~GVIYlSrIPp~M~p~klR~llsqfGeI~R 64 (154)
..-.|||+.||+.++...|+++|++||.|..
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~ 46 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND 46 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce
Confidence 3558999999999999999999999999877
No 181
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.64 E-value=0.0023 Score=45.63 Aligned_cols=34 Identities=9% Similarity=0.126 Sum_probs=31.7
Q ss_pred ceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 36 GICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 36 GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
-.|||+.||...+...|+++|++| .|.+|+|...
T Consensus 17 ~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d 50 (109)
T 2dnn_A 17 LYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKD 50 (109)
T ss_dssp HEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEEC
Confidence 489999999999999999999999 8999999764
No 182
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=96.64 E-value=0.0015 Score=51.18 Aligned_cols=37 Identities=16% Similarity=0.317 Sum_probs=33.3
Q ss_pred CcceEEecCCCCCCCHHHHHHHHhccC-ccceEEeccC
Q 044301 34 QRGICYLSRIPPHMDPVKLRQILSQYG-EIQRIYLAPE 70 (154)
Q Consensus 34 k~GVIYlSrIPp~M~p~klR~llsqfG-eI~RIyL~pE 70 (154)
....|||+.||+.++...|+++|++|| .|..|++...
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~ 153 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSL 153 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeC
Confidence 567899999999999999999999999 9999999764
No 183
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=96.61 E-value=0.0027 Score=49.50 Aligned_cols=42 Identities=14% Similarity=0.324 Sum_probs=35.1
Q ss_pred HHHHHhhcCCcceEEecCCCCCCCHHHHHHHHhccCccceEEe
Q 044301 25 LLEEAAKADQRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYL 67 (154)
Q Consensus 25 l~k~~~k~~k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL 67 (154)
+..........-.|||+.||+.++...|+++|++|| |..+.+
T Consensus 12 ~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~ 53 (284)
T 3smz_A 12 LEHTERQFRNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV 53 (284)
T ss_dssp HHHHHHHHHCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE
T ss_pred HhhhhccCCCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE
Confidence 333344445677999999999999999999999999 999888
No 184
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=96.58 E-value=0.002 Score=49.02 Aligned_cols=37 Identities=16% Similarity=0.300 Sum_probs=33.8
Q ss_pred CcceEEecCCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 34 QRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 34 k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
...-|||+.||+.++...|+++|++||.|..+.|...
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d 138 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD 138 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeecc
Confidence 3567999999999999999999999999999999764
No 185
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=96.56 E-value=0.0025 Score=48.98 Aligned_cols=36 Identities=22% Similarity=0.377 Sum_probs=33.5
Q ss_pred cceEEecCCCCCCCHHHHHHHHhccC-ccceEEeccC
Q 044301 35 RGICYLSRIPPHMDPVKLRQILSQYG-EIQRIYLAPE 70 (154)
Q Consensus 35 ~GVIYlSrIPp~M~p~klR~llsqfG-eI~RIyL~pE 70 (154)
.-.|||+.||+.++...|+++|++|| +|..|.+.+.
T Consensus 151 ~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~ 187 (229)
T 2adc_A 151 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK 187 (229)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC
Confidence 46799999999999999999999999 9999999773
No 186
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=96.31 E-value=0.0029 Score=49.02 Aligned_cols=35 Identities=11% Similarity=0.260 Sum_probs=32.6
Q ss_pred ceEEecCC----CCCCCHHHHHHHHhccCccceEEeccC
Q 044301 36 GICYLSRI----PPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 36 GVIYlSrI----Pp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
.-||++.| |+..+...|+.||++||+|..+.+.-.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~D 41 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFND 41 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEEC
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEec
Confidence 46999999 999999999999999999999999764
No 187
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=96.30 E-value=0.0048 Score=45.48 Aligned_cols=37 Identities=24% Similarity=0.288 Sum_probs=32.5
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHhccCccc--eEEeccC
Q 044301 33 DQRGICYLSRIPPHMDPVKLRQILSQYGEIQ--RIYLAPE 70 (154)
Q Consensus 33 ~k~GVIYlSrIPp~M~p~klR~llsqfGeI~--RIyL~pE 70 (154)
.....|||+.||...+...|+++|++| .|. .|+|...
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d 78 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVD 78 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEEC
Confidence 456889999999999999999999999 566 8888764
No 188
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=96.23 E-value=0.0048 Score=44.90 Aligned_cols=31 Identities=10% Similarity=0.154 Sum_probs=26.6
Q ss_pred ceEEecCCCCCCCHHHHHHHHhccCccceEE
Q 044301 36 GICYLSRIPPHMDPVKLRQILSQYGEIQRIY 66 (154)
Q Consensus 36 GVIYlSrIPp~M~p~klR~llsqfGeI~RIy 66 (154)
--|||+.||+.++...|+++|++||+|..+.
T Consensus 5 ~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~ 35 (198)
T 2yh0_A 5 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLT 35 (198)
T ss_dssp CEEEEESCCTTCCHHHHHHHHHHHHHHHTCC
T ss_pred eEEEEcCCCCCCCHHHHHHHHHHHHhhcccc
Confidence 4699999999999999999999997664443
No 189
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=96.13 E-value=0.0048 Score=48.03 Aligned_cols=35 Identities=23% Similarity=0.483 Sum_probs=32.1
Q ss_pred cceEEecCCCCCCCHHHHH----HHHhccCccceEEecc
Q 044301 35 RGICYLSRIPPHMDPVKLR----QILSQYGEIQRIYLAP 69 (154)
Q Consensus 35 ~GVIYlSrIPp~M~p~klR----~llsqfGeI~RIyL~p 69 (154)
.-.|||+.||..++...|| ++|++||.|..|++..
T Consensus 9 ~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~ 47 (282)
T 3pgw_A 9 NHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR 47 (282)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC
Confidence 4589999999999999977 8999999999999875
No 190
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=96.01 E-value=0.0028 Score=51.87 Aligned_cols=36 Identities=22% Similarity=0.400 Sum_probs=32.5
Q ss_pred CcceEEecCCCCCC---------CHHHHHHHHhccCccceEEecc
Q 044301 34 QRGICYLSRIPPHM---------DPVKLRQILSQYGEIQRIYLAP 69 (154)
Q Consensus 34 k~GVIYlSrIPp~M---------~p~klR~llsqfGeI~RIyL~p 69 (154)
..-.|||+.||+.+ +...|+.+|++||+|..|++.+
T Consensus 133 ~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~ 177 (240)
T 3u1l_A 133 KNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE 177 (240)
T ss_dssp CCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG
T ss_pred CCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC
Confidence 34579999999998 6999999999999999999974
No 191
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.90 E-value=0.0073 Score=40.55 Aligned_cols=32 Identities=25% Similarity=0.438 Sum_probs=29.1
Q ss_pred CcceEEecCCCCCCCHHHHHHHHhccCccceEEe
Q 044301 34 QRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYL 67 (154)
Q Consensus 34 k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL 67 (154)
..-.|||+.+ .++...|+.+|++||+|..|.+
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i 45 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM 45 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEE
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEe
Confidence 3457999995 8999999999999999999999
No 192
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=95.82 E-value=0.0056 Score=43.95 Aligned_cols=32 Identities=9% Similarity=0.150 Sum_probs=29.2
Q ss_pred CcceEEecCCCCCCCHHHHHHHHhccCccceE
Q 044301 34 QRGICYLSRIPPHMDPVKLRQILSQYGEIQRI 65 (154)
Q Consensus 34 k~GVIYlSrIPp~M~p~klR~llsqfGeI~RI 65 (154)
..-.|||+.||+.++...|+++|++||+|..+
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~ 129 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLV 129 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe
Confidence 35689999999999999999999999998766
No 193
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=95.71 E-value=0.01 Score=42.19 Aligned_cols=28 Identities=11% Similarity=0.176 Sum_probs=24.7
Q ss_pred cceEEecCCCCCCCHHHHHHHHhccCcc
Q 044301 35 RGICYLSRIPPHMDPVKLRQILSQYGEI 62 (154)
Q Consensus 35 ~GVIYlSrIPp~M~p~klR~llsqfGeI 62 (154)
.-.|||+.||+.++...|+++|++||+|
T Consensus 4 ~~~l~V~nLp~~~t~~~l~~~F~~~g~~ 31 (172)
T 2g4b_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRL 31 (172)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHH
T ss_pred ccEEEEcCCCcccCHHHHHHHHHHHhhh
Confidence 3469999999999999999999999533
No 194
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.66 E-value=0.0072 Score=40.57 Aligned_cols=30 Identities=3% Similarity=0.069 Sum_probs=25.8
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHhccCcc
Q 044301 33 DQRGICYLSRIPPHMDPVKLRQILSQYGEI 62 (154)
Q Consensus 33 ~k~GVIYlSrIPp~M~p~klR~llsqfGeI 62 (154)
...-.|||+.||+.++...|+++|++|+.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~ 42 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSVRA 42 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCSEE
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCeEE
Confidence 345679999999999999999999988543
No 195
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=95.11 E-value=0.0083 Score=43.05 Aligned_cols=32 Identities=9% Similarity=0.124 Sum_probs=29.1
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHhccCccce
Q 044301 33 DQRGICYLSRIPPHMDPVKLRQILSQYGEIQR 64 (154)
Q Consensus 33 ~k~GVIYlSrIPp~M~p~klR~llsqfGeI~R 64 (154)
...-.|||+.||+.++...|+++|++||.|-.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~ 42 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKND 42 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce
Confidence 45678999999999999999999999998765
No 196
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=94.75 E-value=0.023 Score=40.59 Aligned_cols=33 Identities=24% Similarity=0.422 Sum_probs=29.4
Q ss_pred CcceEEecCCCCCCCHHHHHHHHhccCccceEEec
Q 044301 34 QRGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLA 68 (154)
Q Consensus 34 k~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~ 68 (154)
..-.|||+.+ .++...|+.+|++||+|..|.+.
T Consensus 38 ~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~ 70 (121)
T 2bz2_A 38 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD 70 (121)
T ss_dssp CCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE
T ss_pred CCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe
Confidence 4567999995 59999999999999999999984
No 197
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.95 E-value=0.036 Score=40.40 Aligned_cols=29 Identities=24% Similarity=0.529 Sum_probs=25.9
Q ss_pred eEEecCCCCCCCHHH----HHHHHhccC-ccceE
Q 044301 37 ICYLSRIPPHMDPVK----LRQILSQYG-EIQRI 65 (154)
Q Consensus 37 VIYlSrIPp~M~p~k----lR~llsqfG-eI~RI 65 (154)
.||++.||-..++.. |+++|++|| .|-.|
T Consensus 11 ~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V 44 (96)
T 2diu_A 11 LLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI 44 (96)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE
Confidence 499999999999987 558999995 99888
No 198
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.91 E-value=0.041 Score=40.11 Aligned_cols=36 Identities=22% Similarity=0.312 Sum_probs=28.5
Q ss_pred cceEEecCCCCC-----CCH----HHHHHHHhccCccceEEeccC
Q 044301 35 RGICYLSRIPPH-----MDP----VKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 35 ~GVIYlSrIPp~-----M~p----~klR~llsqfGeI~RIyL~pE 70 (154)
-|-|.++.+|+. +.+ ..|.+.|++||+|--+++...
T Consensus 15 D~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d 59 (95)
T 1ufw_A 15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG 59 (95)
T ss_dssp TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT
T ss_pred CCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC
Confidence 377888888743 444 668999999999999999776
No 199
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.75 E-value=0.048 Score=38.47 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHHhccCccceEEec
Q 044301 45 PHMDPVKLRQILSQYGEIQRIYLA 68 (154)
Q Consensus 45 p~M~p~klR~llsqfGeI~RIyL~ 68 (154)
+.++...|+++|++||+|..|+|.
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~ 50 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS 50 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc
Confidence 679999999999999999999997
No 200
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.68 E-value=0.045 Score=39.49 Aligned_cols=35 Identities=20% Similarity=0.264 Sum_probs=27.6
Q ss_pred ceEEecCCC----CCCCH----HHHHHHHhccCccceEEeccC
Q 044301 36 GICYLSRIP----PHMDP----VKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 36 GVIYlSrIP----p~M~p----~klR~llsqfGeI~RIyL~pE 70 (154)
|-|.++..| ..+.+ ..|.+.|++||+|--+++...
T Consensus 8 ~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d 50 (91)
T 2dnr_A 8 GTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED 50 (91)
T ss_dssp CEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS
T ss_pred CeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC
Confidence 667777777 34445 779999999999999998774
No 201
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=93.12 E-value=0.055 Score=46.35 Aligned_cols=35 Identities=11% Similarity=0.264 Sum_probs=31.4
Q ss_pred cceEEecC--CCCCCCHHHHHHHHhccCccceEEecc
Q 044301 35 RGICYLSR--IPPHMDPVKLRQILSQYGEIQRIYLAP 69 (154)
Q Consensus 35 ~GVIYlSr--IPp~M~p~klR~llsqfGeI~RIyL~p 69 (154)
+-.||+++ |+..++...|+++|++||+|.+|.+.+
T Consensus 18 s~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~ 54 (345)
T 3tht_A 18 TQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP 54 (345)
T ss_dssp CSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT
T ss_pred CCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC
Confidence 45899999 578999999999999999999998854
No 202
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.79 E-value=0.1 Score=36.08 Aligned_cols=35 Identities=23% Similarity=0.422 Sum_probs=27.8
Q ss_pred CCcceEEecCCCCCCC-----------HHHHHHHHhccCccceEEe
Q 044301 33 DQRGICYLSRIPPHMD-----------PVKLRQILSQYGEIQRIYL 67 (154)
Q Consensus 33 ~k~GVIYlSrIPp~M~-----------p~klR~llsqfGeI~RIyL 67 (154)
...-+|+|.+|..-.. ...|+++|++||+|..|++
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i 58 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL 58 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE
Confidence 3467899999943322 3689999999999999987
No 203
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=92.69 E-value=0.15 Score=38.77 Aligned_cols=50 Identities=20% Similarity=0.353 Sum_probs=40.7
Q ss_pred hhHHHHHHHhhcCCcceEEecCCCCCCCHHHHHHHHhcc-----CccceEEeccC
Q 044301 21 KKQRLLEEAAKADQRGICYLSRIPPHMDPVKLRQILSQY-----GEIQRIYLAPE 70 (154)
Q Consensus 21 ~kk~l~k~~~k~~k~GVIYlSrIPp~M~p~klR~llsqf-----GeI~RIyL~pE 70 (154)
.-|+++.........=+|=|-.||--++.++||+++..| |.|..|+|.|.
T Consensus 7 eVk~il~s~~~~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD 61 (117)
T 2l9w_A 7 EVKRLLASRNSKELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD 61 (117)
T ss_dssp HHHHHHHCCCTTTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT
T ss_pred HHHHHHhccCCccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC
Confidence 345555554334446788888999999999999999999 99999999996
No 204
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=92.12 E-value=0.18 Score=35.32 Aligned_cols=37 Identities=11% Similarity=0.198 Sum_probs=29.9
Q ss_pred CcceEEecCCCCC--C---CHHHHHHHHhccCccceEEeccC
Q 044301 34 QRGICYLSRIPPH--M---DPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 34 k~GVIYlSrIPp~--M---~p~klR~llsqfGeI~RIyL~pE 70 (154)
.+-||||.++..- + ....|+++|++||+|.+|++...
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~ 48 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEI 48 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecC
Confidence 3568999999631 2 56899999999999999999653
No 205
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=90.14 E-value=0.3 Score=34.80 Aligned_cols=52 Identities=19% Similarity=0.294 Sum_probs=42.1
Q ss_pred EEecCCCCCCCHHHHHHHHhccCccceEEeccCCCchhhhhhhhccccCCCCCCCcccccceeeeec
Q 044301 38 CYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPEDPSTRVLRKRENRKRDGGFQDQGFSEGYKQKVQQ 104 (154)
Q Consensus 38 IYlSrIPp~M~p~klR~llsqfGeI~RIyL~pEd~~~~~~rk~~~rkK~gg~k~~~FtEGWVEf~~k 104 (154)
|-|-||||.|+...+.+.|+.+.++.-.|..+-+.+. ....|+--|+.|.+.
T Consensus 4 vVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~---------------~~~~~SRaYi~f~~~ 55 (91)
T 1uw4_A 4 VVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSL---------------YPHMYARAYINFKNQ 55 (91)
T ss_dssp EEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSS---------------TTCCCEEEEEEESSS
T ss_pred EEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCC---------------CCCcceEEEEEeCCH
Confidence 5588999999999999999999999999988876432 135677788888653
No 206
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=89.12 E-value=0.17 Score=45.25 Aligned_cols=34 Identities=21% Similarity=0.398 Sum_probs=27.3
Q ss_pred cceEEecCCCCCCCHHHHHHHHhccCccceEEecc
Q 044301 35 RGICYLSRIPPHMDPVKLRQILSQYGEIQRIYLAP 69 (154)
Q Consensus 35 ~GVIYlSrIPp~M~p~klR~llsqfGeI~RIyL~p 69 (154)
.=-|||+ .|+..++.+|.+||+|||.|..+|+-.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~ 86 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYE 86 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEEC
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEc
Confidence 4457888 899999999999999999999999964
No 207
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=86.05 E-value=0.69 Score=33.27 Aligned_cols=37 Identities=11% Similarity=0.267 Sum_probs=29.1
Q ss_pred CcceEEecCCCC--CC---CHHHHHHHHhccCccceEEeccC
Q 044301 34 QRGICYLSRIPP--HM---DPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 34 k~GVIYlSrIPp--~M---~p~klR~llsqfGeI~RIyL~pE 70 (154)
.+-||+|.++-. .+ -...|++.|++||+|.+|++...
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~ 60 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQE 60 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeec
Confidence 467999999832 11 14789999999999999999764
No 208
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=85.78 E-value=0.45 Score=33.19 Aligned_cols=36 Identities=19% Similarity=0.331 Sum_probs=26.9
Q ss_pred cceEEecCC--CCCCCH--------HHHHHHHhccCccceEEeccC
Q 044301 35 RGICYLSRI--PPHMDP--------VKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 35 ~GVIYlSrI--Pp~M~p--------~klR~llsqfGeI~RIyL~pE 70 (154)
+=||.|.++ |-.+.. ..|+++|++||+|.+|++...
T Consensus 5 s~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~ 50 (105)
T 3v4m_A 5 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRP 50 (105)
T ss_dssp CSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCC
T ss_pred CeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEecc
Confidence 347777776 434432 589999999999999999654
No 209
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=84.50 E-value=0.84 Score=33.69 Aligned_cols=31 Identities=23% Similarity=0.432 Sum_probs=27.5
Q ss_pred cCCcceEEecCCCCCCCHHHHHHHHhccCccc
Q 044301 32 ADQRGICYLSRIPPHMDPVKLRQILSQYGEIQ 63 (154)
Q Consensus 32 ~~k~GVIYlSrIPp~M~p~klR~llsqfGeI~ 63 (154)
...+-|+|| ..|+-++-..|.++|++||-|.
T Consensus 13 p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv~ 43 (100)
T 1whv_A 13 PKRDHVLHV-TFPKEWKTSDLYQLFSAFGNIQ 43 (100)
T ss_dssp CCCCSEEEE-ECCTTCCHHHHHHHHTTTCSCC
T ss_pred CCCCeEEEE-eCChhhhhHHHHHHhhccCCEE
Confidence 356789999 9999999999999999999654
No 210
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=84.26 E-value=0.51 Score=34.33 Aligned_cols=53 Identities=17% Similarity=0.229 Sum_probs=40.8
Q ss_pred EEecCCCCCCCHHHHHHHHhccCccceEEeccCCCchhhhhhhhccccCCCCCCCcccccceeeeecc
Q 044301 38 CYLSRIPPHMDPVKLRQILSQYGEIQRIYLAPEDPSTRVLRKRENRKRDGGFQDQGFSEGYKQKVQQE 105 (154)
Q Consensus 38 IYlSrIPp~M~p~klR~llsqfGeI~RIyL~pEd~~~~~~rk~~~rkK~gg~k~~~FtEGWVEf~~k~ 105 (154)
|-|-||||.|+...+.+.|+.+=+++-.|..+-+.+. +...|+--|+.|.+.+
T Consensus 12 vVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~---------------~~~~~SRAYI~F~~~e 64 (97)
T 2l08_A 12 VVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSL---------------YPHLYSRAYINFRNPD 64 (97)
T ss_dssp EEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSS---------------CCSCCCCCEEEESCHH
T ss_pred EEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCC---------------CCCcceEEEEEeCCHH
Confidence 5688999999999999999987777777777765432 2556888888887543
No 211
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=82.74 E-value=0.17 Score=35.32 Aligned_cols=19 Identities=16% Similarity=0.478 Sum_probs=14.8
Q ss_pred HHHHH-hccCccceEEeccC
Q 044301 52 LRQIL-SQYGEIQRIYLAPE 70 (154)
Q Consensus 52 lR~ll-sqfGeI~RIyL~pE 70 (154)
|+.+| ++||+|.+|++...
T Consensus 43 l~~~f~~~~G~V~~v~i~~~ 62 (104)
T 1jmt_A 43 VFTEMEEKYGEVEEMNVCDN 62 (104)
T ss_dssp HHHHHHHHTCCEEEEEECCS
T ss_pred HHHHhhccCCceEEEEEEeC
Confidence 34444 99999999999753
No 212
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=79.73 E-value=1.4 Score=32.54 Aligned_cols=28 Identities=21% Similarity=0.421 Sum_probs=25.1
Q ss_pred CcceEEecCCCCCCCHHHHHHHHhccCcc
Q 044301 34 QRGICYLSRIPPHMDPVKLRQILSQYGEI 62 (154)
Q Consensus 34 k~GVIYlSrIPp~M~p~klR~llsqfGeI 62 (154)
.+-|+|| ..|+-+.-..|.++|++||.|
T Consensus 5 R~HV~~l-~FP~ewKt~Di~~lFs~fggv 32 (101)
T 3ctr_A 5 SDHVLHV-TFPKEWKTSDLYQLFSAFGNI 32 (101)
T ss_dssp EEEEEEE-ECCTTCCHHHHHHHTTTSEEE
T ss_pred CCeEEEE-eCChhhhhHHHHHHHhccCCE
Confidence 4578999 999999999999999999944
No 213
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=72.24 E-value=2.5 Score=30.19 Aligned_cols=20 Identities=15% Similarity=0.252 Sum_probs=17.5
Q ss_pred HHHHHHHhccCccceEEecc
Q 044301 50 VKLRQILSQYGEIQRIYLAP 69 (154)
Q Consensus 50 ~klR~llsqfGeI~RIyL~p 69 (154)
..|++.|++||.|.+|++..
T Consensus 32 edl~~~f~kfG~V~~v~i~~ 51 (114)
T 3s6e_A 32 DDVIEECNKHGGVIHIYVDK 51 (114)
T ss_dssp HHHHHHHTTTTCCSEEEECT
T ss_pred HHHHHHHhccCCEEEEEEec
Confidence 36799999999999999954
No 214
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=51.97 E-value=4.3 Score=26.37 Aligned_cols=28 Identities=11% Similarity=0.332 Sum_probs=23.3
Q ss_pred CCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 42 RIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 42 rIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
.|| +..|...+.||..||.|.+|.-+..
T Consensus 8 ~Ip-GIG~kr~~~LL~~Fgs~~~i~~As~ 35 (63)
T 2a1j_A 8 KMP-GVNAKNCRSLMHHVKNIAELAALSQ 35 (63)
T ss_dssp TST-TCCHHHHHHHHHHCSSHHHHHTCCH
T ss_pred cCC-CCCHHHHHHHHHHcCCHHHHHHCCH
Confidence 344 7999999999999999999876554
No 215
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=38.90 E-value=23 Score=31.36 Aligned_cols=29 Identities=21% Similarity=0.447 Sum_probs=24.8
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHhccCcc
Q 044301 33 DQRGICYLSRIPPHMDPVKLRQILSQYGEI 62 (154)
Q Consensus 33 ~k~GVIYlSrIPp~M~p~klR~llsqfGeI 62 (154)
..+.|+|++ .|+.+....|.++|+.||.|
T Consensus 438 ~R~~vl~v~-f~~~~~~~~i~~~fs~fg~v 466 (507)
T 3d45_A 438 KRDHVLHVT-FPKEWKTSDLYQLFSAFGNI 466 (507)
T ss_dssp CGGGEEEEE-CCTTCCHHHHHHHGGGGCCC
T ss_pred CcCcEEEEe-CCCCCCHHHHHHHHHhcCCE
Confidence 446788887 99999999999999999954
No 216
>1yrx_A Hypothetical protein RSPH03001874; ferredoxin-like fold, flavin binding, photoreceptor, transcr; HET: FMN D9G; 2.30A {Rhodobacter sphaeroides 2} SCOP: d.58.10.2 PDB: 2bun_A*
Probab=37.92 E-value=16 Score=26.88 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=21.0
Q ss_pred ceEEecCCCCCCCHHHHHHHHhc
Q 044301 36 GICYLSRIPPHMDPVKLRQILSQ 58 (154)
Q Consensus 36 GVIYlSrIPp~M~p~klR~llsq 58 (154)
-+||+|++-+.|.+..|..||.+
T Consensus 6 ~liY~S~a~~~~~~~~l~~Il~~ 28 (121)
T 1yrx_A 6 SCCYRSLAAPDLTLRDLLDIVET 28 (121)
T ss_dssp EEEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEEEEeecCCCCHHHHHHHHHH
Confidence 38999999999999999999984
No 217
>2iyg_A APPA, antirepressor of PPSR, sensor of blue light; signal transduction; HET: FMN; 2.3A {Rhodobacter sphaeroides} PDB: 2iyi_A*
Probab=37.53 E-value=17 Score=26.99 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=22.0
Q ss_pred cceEEecCCCCCCCHHHHHHHHhc
Q 044301 35 RGICYLSRIPPHMDPVKLRQILSQ 58 (154)
Q Consensus 35 ~GVIYlSrIPp~M~p~klR~llsq 58 (154)
.-+||+|++-+.|.+..|..||.+
T Consensus 17 ~~LiY~S~a~~~~~~~~l~~Il~~ 40 (124)
T 2iyg_A 17 VSCSYRSLAAPDLTLRDLLDIVET 40 (124)
T ss_dssp EEEEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEEEEEeecCCCCHHHHHHHHHH
Confidence 468999999999999999999986
No 218
>1x0p_A Hypothetical protein TLL0078; BLUF, FAD, structural genomics, electron transport; HET: FAD; 2.00A {Thermosynechococcus elongatus} SCOP: d.58.10.2
Probab=37.21 E-value=17 Score=27.24 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.7
Q ss_pred ceEEecCCCCCCCHHHHHHHHhc
Q 044301 36 GICYLSRIPPHMDPVKLRQILSQ 58 (154)
Q Consensus 36 GVIYlSrIPp~M~p~klR~llsq 58 (154)
-+||+|++-+.|++..|..||.+
T Consensus 5 ~l~Y~S~~~~~~~~~~l~~Il~~ 27 (143)
T 1x0p_A 5 RLIYLSCATDGLSYPDLRDIMAK 27 (143)
T ss_dssp EEEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEEEEeeCCCCCHHHHHHHHHH
Confidence 37999999999999999999965
No 219
>2hfn_A Synechocystis photoreceptor (SLR1694); beta sheet ferredoxin-like fold, flavin binding protein, electron transport; HET: FMN; 1.80A {Synechocystis SP} PDB: 2hfo_A* 3mzi_A*
Probab=35.88 E-value=18 Score=27.42 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=20.9
Q ss_pred ceEEecCCCCCCCHHHHHHHHhc
Q 044301 36 GICYLSRIPPHMDPVKLRQILSQ 58 (154)
Q Consensus 36 GVIYlSrIPp~M~p~klR~llsq 58 (154)
-+||+|++-+.|++..|..||.+
T Consensus 8 ~liY~S~a~~~~~~~~l~~Il~~ 30 (153)
T 2hfn_A 8 RLIYSSQGIPNLQPQDLKDILES 30 (153)
T ss_dssp EEEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEEEEeecCCCCHHHHHHHHHH
Confidence 48999999888999999999985
No 220
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=35.84 E-value=10 Score=26.23 Aligned_cols=28 Identities=11% Similarity=0.332 Sum_probs=23.2
Q ss_pred CCCCCCCHHHHHHHHhccCccceEEeccC
Q 044301 42 RIPPHMDPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 42 rIPp~M~p~klR~llsqfGeI~RIyL~pE 70 (154)
.|| +..|...+.||..||.|..|.-+..
T Consensus 22 ~Ip-GIG~kr~~~LL~~FgSl~~i~~AS~ 49 (84)
T 1z00_B 22 KMP-GVNAKNCRSLMHHVKNIAELAALSQ 49 (84)
T ss_dssp TCS-SCCHHHHHHHHHHSSCHHHHHHSCH
T ss_pred hCC-CCCHHHHHHHHHHcCCHHHHHHCCH
Confidence 344 6899999999999999998876654
No 221
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=30.45 E-value=28 Score=26.00 Aligned_cols=22 Identities=14% Similarity=0.380 Sum_probs=18.8
Q ss_pred HHHHHHHHhccCccceEEeccC
Q 044301 49 PVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 49 p~klR~llsqfGeI~RIyL~pE 70 (154)
...|++.|++||+|.+|.+...
T Consensus 143 ~~dl~~e~~~~G~v~~~~v~~~ 164 (222)
T 3dxb_A 143 EGEVTEECGKFGAVNRVIIYQE 164 (222)
T ss_dssp HHHHHHHHTTTSCEEEEEEEEE
T ss_pred HHHHHHHHHccCCeEEEEEecC
Confidence 4679999999999999999643
No 222
>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*
Probab=28.22 E-value=29 Score=27.35 Aligned_cols=35 Identities=17% Similarity=0.226 Sum_probs=23.1
Q ss_pred cceEEecCCC----CCCCHHHHHHHHhccCccceEEecc
Q 044301 35 RGICYLSRIP----PHMDPVKLRQILSQYGEIQRIYLAP 69 (154)
Q Consensus 35 ~GVIYlSrIP----p~M~p~klR~llsqfGeI~RIyL~p 69 (154)
.||-+||+=- -+.++++||.-||-||..|...+.-
T Consensus 29 ~g~~~iss~~l~~~~~~~~~~iRkdls~fg~~G~~g~gY 67 (215)
T 2vt3_A 29 SGKQRVSSAELSDAVKVDSATIRRDFSYFGALGKKGYGY 67 (215)
T ss_dssp TTCCEECHHHHHHHHCCCHHHHHHHHHHTTCCC-----E
T ss_pred cCCcEECHHHHHHHhCCCHHHeechHHHHHHhcCCcceE
Confidence 5666666421 2689999999999999998876644
No 223
>2byc_A Blue-light receptor of the BLUF-family; signaling protein, photoreceptor, flavin; HET: FMN; 1.9A {Rhodobacter sphaeroides} SCOP: d.58.10.2
Probab=26.78 E-value=23 Score=26.54 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=21.0
Q ss_pred ceEEecCCCCCCCHHHHHHHHhc
Q 044301 36 GICYLSRIPPHMDPVKLRQILSQ 58 (154)
Q Consensus 36 GVIYlSrIPp~M~p~klR~llsq 58 (154)
-+||+|++-+.|++..|..||.+
T Consensus 7 rLiY~S~a~~~~~~~~l~~Il~~ 29 (137)
T 2byc_A 7 SLTYRSRVRLADPVADIVQIMRA 29 (137)
T ss_dssp EEEEEEEECCSSHHHHHHHHHHH
T ss_pred EEEEEEeeCCCCCHHHHHHHHHH
Confidence 47999999999999999999976
No 224
>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*
Probab=23.88 E-value=31 Score=27.38 Aligned_cols=18 Identities=28% Similarity=0.560 Sum_probs=16.5
Q ss_pred CCCHHHHHHHHhccCccc
Q 044301 46 HMDPVKLRQILSQYGEIQ 63 (154)
Q Consensus 46 ~M~p~klR~llsqfGeI~ 63 (154)
+.++++||+-||-||+.|
T Consensus 43 gv~~~qiRkDls~fg~~G 60 (212)
T 3keo_A 43 GIDSATVRRDFSYFGELG 60 (212)
T ss_dssp TSCHHHHHHHHHTTGGGT
T ss_pred CCCHHHHHHHHHHHhhcC
Confidence 579999999999999887
No 225
>2d11_E Na(+)/H(+) exchange regulatory cofactor NHE-RF2; protein-peptide complex, cell adhesion; 2.81A {Mus musculus}
Probab=22.89 E-value=41 Score=19.63 Aligned_cols=15 Identities=40% Similarity=0.702 Sum_probs=13.3
Q ss_pred CCCCHHHHHHHHhcc
Q 044301 45 PHMDPVKLRQILSQY 59 (154)
Q Consensus 45 p~M~p~klR~llsqf 59 (154)
|-|+..+=++|||.|
T Consensus 14 p~MDw~kk~eifsn~ 28 (28)
T 2d11_E 14 PQMDWNRKREIFSNF 28 (28)
T ss_pred CcccHHHHHHHHhcC
Confidence 569999999999976
No 226
>3ghf_A Septum site-determining protein MINC; structural genomics, cell division, cell cycle, septation, PSI-2, protein structure initiative; HET: CIT; 2.20A {Salmonella typhimurium LT2}
Probab=22.62 E-value=59 Score=23.43 Aligned_cols=29 Identities=14% Similarity=0.173 Sum_probs=25.8
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHhccCc
Q 044301 33 DQRGICYLSRIPPHMDPVKLRQILSQYGE 61 (154)
Q Consensus 33 ~k~GVIYlSrIPp~M~p~klR~llsqfGe 61 (154)
..|=||+|+.++.......|.++|.+||-
T Consensus 47 ~aPVVlDl~~l~~~~dl~~L~~~l~~~gl 75 (120)
T 3ghf_A 47 HAPVVINVSGLESPVNWPELHKIVTSTGL 75 (120)
T ss_dssp TCEEEEEEEECCSSCCHHHHHHHHHTTTC
T ss_pred CCcEEEEccccCChHHHHHHHHHHHHcCC
Confidence 56889999999877889999999999994
No 227
>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*
Probab=22.61 E-value=40 Score=26.39 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=18.6
Q ss_pred CCCHHHHHHHHhccCccceEEe
Q 044301 46 HMDPVKLRQILSQYGEIQRIYL 67 (154)
Q Consensus 46 ~M~p~klR~llsqfGeI~RIyL 67 (154)
+.++++||.-||-||.+|...+
T Consensus 39 ~~~~~~iRkdls~~g~~G~~g~ 60 (211)
T 2dt5_A 39 QVTAFQVRKDLSYFGSYGTRGV 60 (211)
T ss_dssp TSCHHHHHHHHHHTTCCCCTTT
T ss_pred CCCHHHeechHHHHHHhcCCce
Confidence 5799999999999999876543
No 228
>3enu_A Nitrollin, putative uncharacterized protein; betagamma crystallin, structural protein; 1.86A {Nitrosospira multiformis} PDB: 3ent_A
Probab=22.02 E-value=18 Score=27.05 Aligned_cols=31 Identities=13% Similarity=0.210 Sum_probs=23.4
Q ss_pred ccceeeeecc--cCCCCCCCCCcccccccccCC
Q 044301 96 EGYKQKVQQE--SQTHPELPGSEQVTKVIRHFP 126 (154)
Q Consensus 96 EGWVEf~~k~--~g~~~e~~~~~~~~~~~r~~~ 126 (154)
.=|+||.++. +|.+.-+..+.+.+..++.+.
T Consensus 22 gCWvqFf~~~~fqGD~~~L~GPaql~~l~~~~g 54 (114)
T 3enu_A 22 GCWVKFFDKKNFQGDSLFLSGPATLPRLIGPFG 54 (114)
T ss_dssp CCEEEEESSGGGCSCEEEEESSEEESSSEETTT
T ss_pred CchhhhhccccccCceEEEeCcHhhhhhcchhh
Confidence 3699999977 566666666788888887765
No 229
>2d10_E Ezrin-radixin-moesin binding phosphoprotein 50; protein-peptide complex, cell adhesion; 2.50A {Mus musculus}
Probab=20.69 E-value=49 Score=19.32 Aligned_cols=15 Identities=33% Similarity=0.503 Sum_probs=13.2
Q ss_pred CCCCHHHHHHHHhcc
Q 044301 45 PHMDPVKLRQILSQY 59 (154)
Q Consensus 45 p~M~p~klR~llsqf 59 (154)
|-|+..+=++|||.|
T Consensus 14 p~MDw~kk~eifsn~ 28 (28)
T 2d10_E 14 PQMDWSKKNELFSNL 28 (28)
T ss_pred CcccHHHHHHHHhcC
Confidence 569999999999976
No 230
>3eyp_A Putative alpha-L-fucosidase; structural genomics, hydrolase, lipoprotein, PSI-2, protein initiative; 1.90A {Bacteroides thetaiotaomicron}
Probab=20.53 E-value=1.3e+02 Score=26.36 Aligned_cols=52 Identities=15% Similarity=0.269 Sum_probs=35.4
Q ss_pred hhhhHHHHHHHhhcCCcceEEecCC-------CCCC-------CHHHHHHHHhccCccceEEeccC
Q 044301 19 SKKKQRLLEEAAKADQRGICYLSRI-------PPHM-------DPVKLRQILSQYGEIQRIYLAPE 70 (154)
Q Consensus 19 ~k~kk~l~k~~~k~~k~GVIYlSrI-------Pp~M-------~p~klR~llsqfGeI~RIyL~pE 70 (154)
...-+.+.++..+..-.=-+|+|.. |-+. ...+|++||++||.|.-|++--.
T Consensus 103 ~Div~e~~~A~r~~Gl~~g~Y~s~~dw~~~~~~~y~~~~Y~~~~~~Ql~ELlt~Yg~i~~lW~Dg~ 168 (469)
T 3eyp_A 103 GDVVREFVDACEEYGLKAGIYLGPHDRHEHLSPLYTTERYKEYYAHQLGELMSDYGKIWETWWDGA 168 (469)
T ss_dssp CCHHHHHHHHHHHHTCEEEEEECSSCHHHHTSTTCCHHHHHHHHHHHHHHHHHSSCCCCEEECCCT
T ss_pred CCHHHHHHHHHHHcCCeEEEEeChhHhCCCcCcccCcHHHHHHHHHHHHHHHhcCCcccEEEeCCC
Confidence 3455566666665544445699954 3322 24689999999999999998653
Done!