BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044302
(830 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 73.2 bits (178), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 100/221 (45%), Gaps = 24/221 (10%)
Query: 266 TTLPGEIFMKSLKTLVLSGCLKLRKFPHVGGSMECLQELFLDETDIKEMPLSIEHLSGLI 325
T PG + ++ L+++ L +FP + LQ +D + E+P + + +GL
Sbjct: 78 ATQPGRVALE-LRSVPLP------QFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLE 130
Query: 326 LLTLKYCKNLSSLPVTISSLKCLRTLKLSGCSKLKKFPQIV----------GMEGLSELY 375
LTL L +LP +I+SL LR L + C +L + P+ + G+ L L
Sbjct: 131 TLTLAR-NPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLR 189
Query: 376 LDGTSITEVPSSIELLPGIELLNLNDCKNLVRLPRSINGLKALKTLSLSGCCKLENVPDT 435
L+ T I +P+SI L ++ L + + L L +I+ L L+ L L GC L N P
Sbjct: 190 LEWTGIRSLPASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPI 248
Query: 436 LGQVESLEEL---DISGTATRRPPCSIFHMKNLKTLSFSGC 473
G L+ L D S T P I + L+ L GC
Sbjct: 249 FGGRAPLKRLILKDCSNLLTL--PLDIHRLTQLEKLDLRGC 287
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/220 (31%), Positives = 100/220 (45%), Gaps = 25/220 (11%)
Query: 359 LKKFP-QIVGMEGLSELYLDGTSITEVPSSIELLPGIELLNLNDCKNLVR-LPRSINGLK 416
L +FP Q + L +D + E+P + + G+E L L +N +R LP SI L
Sbjct: 93 LPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTL--ARNPLRALPASIASLN 150
Query: 417 ALKTLSLSGCCKLENVPDTLGQVES---------LEELDISGTATRRPPCSIFHMKNLKT 467
L+ LS+ C +L +P+ L ++ L+ L + T R P SI +++NLK+
Sbjct: 151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKS 210
Query: 468 LSFSGCNGPPSTASSLMLPSLSGLCSLTKLDLSDCGLGEGAILSDIGNLHSLKALYLSE- 526
L N P S + P++ L L +LDL C G LK L L +
Sbjct: 211 LKIR--NSP----LSALGPAIHHLPKLEELDLRGCTALRN-YPPIFGGRAPLKRLILKDC 263
Query: 527 NNFVTLPASISGLFNLEYLKLEDCKRLQSLP----QLPPN 562
+N +TLP I L LE L L C L LP QLP N
Sbjct: 264 SNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPAN 303
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 105/242 (43%), Gaps = 46/242 (19%)
Query: 208 KVMKLSHSENL-IKTPNFIEVPN-------LEVLDLEGCTRLREIHSSLVRHNKLILLNL 259
+ +LSH ++ I E+P+ LE L L LR + +S+ N+L L++
Sbjct: 99 QAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTL-ARNPLRALPASIASLNRLRELSI 157
Query: 260 KGCTSLTTLPGEIFMKSLKTLVLSGCLKLRKFPHVGGSMECLQELFLDETDIKEMPLSIE 319
+ C LT LP + L + SG H G + LQ L L+ T I+ +P SI
Sbjct: 158 RACPELTELP-----EPLASTDASGE-------HQG--LVNLQSLRLEWTGIRSLPASIA 203
Query: 320 HLSGLILLTLKYCKNLSSLPVTISSLKCLRTLKLSGCSKLKKFPQIVGMEGLSELYLDGT 379
+L L L ++ LS+L I L L L L GC+ L+ +P I G
Sbjct: 204 NLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRA--------- 253
Query: 380 SITEVPSSIELLPGIELLNLNDCKNLVRLPRSINGLKALKTLSLSGCCKLENVPDTLGQV 439
++ L L DC NL+ LP I+ L L+ L L GC L +P + Q+
Sbjct: 254 -------------PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300
Query: 440 ES 441
+
Sbjct: 301 PA 302
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 77/178 (43%), Gaps = 13/178 (7%)
Query: 127 EMHLSAKAFSLMTNLRLLKIGNVQLPKGLEYLSNKLRLLVWHQYP-LKSLPSNLQ----- 180
E+ + + F+ + L L + LP + L N+LR L P L LP L
Sbjct: 118 ELPDTXQQFAGLETLTLARNPLRALPASIASL-NRLRELSIRACPELTELPEPLASTDAS 176
Query: 181 -----LDKIVEFEMCYSRIEELWKGIKPLNTLKVMKLSHSENLIKTPNFIEVPNLEVLDL 235
L + + ++ I L I L LK +K+ +S P +P LE LDL
Sbjct: 177 GEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDL 236
Query: 236 EGCTRLREIHSSLVRHNKLILLNLKGCTSLTTLPGEIF-MKSLKTLVLSGCLKLRKFP 292
GCT LR L L LK C++L TLP +I + L+ L L GC+ L + P
Sbjct: 237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 76/151 (50%), Gaps = 3/151 (1%)
Query: 301 LQELFLDETDIK-EMPLSIEHLSGLILLTLKYCKNLSSLPVTISSLKCLRTLKLSGCSKL 359
LQEL+L ++P ++ + S L+ L L + ++P ++ SL LR LKL
Sbjct: 393 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 452
Query: 360 KKFPQ-IVGMEGLSELYLDGTSIT-EVPSSIELLPGIELLNLNDCKNLVRLPRSINGLKA 417
+ PQ ++ ++ L L LD +T E+PS + + ++L++ + +P+ I L+
Sbjct: 453 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 512
Query: 418 LKTLSLSGCCKLENVPDTLGQVESLEELDIS 448
L L LS N+P LG SL LD++
Sbjct: 513 LAILKLSNNSFSGNIPAELGDCRSLIWLDLN 543
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 76/151 (50%), Gaps = 3/151 (1%)
Query: 301 LQELFLDETDIK-EMPLSIEHLSGLILLTLKYCKNLSSLPVTISSLKCLRTLKLSGCSKL 359
LQEL+L ++P ++ + S L+ L L + ++P ++ SL LR LKL
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455
Query: 360 KKFPQ-IVGMEGLSELYLDGTSIT-EVPSSIELLPGIELLNLNDCKNLVRLPRSINGLKA 417
+ PQ ++ ++ L L LD +T E+PS + + ++L++ + +P+ I L+
Sbjct: 456 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 515
Query: 418 LKTLSLSGCCKLENVPDTLGQVESLEELDIS 448
L L LS N+P LG SL LD++
Sbjct: 516 LAILKLSNNSFSGNIPAELGDCRSLIWLDLN 546
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 66/128 (51%), Gaps = 13/128 (10%)
Query: 434 DTLGQVESLEELDIS-GTATRRPPCSIFHMKNLKTLSFSGCNGPPSTASSLMLPSLSGLC 492
D LEEL+++ + P + ++ NL+TL + + L +GL
Sbjct: 50 DEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS-----NRLKLIPLGVFTGLS 104
Query: 493 SLTKLDLSDCGLGEGAILSD--IGNLHSLKALYLSENNFVTLP-ASISGLFNLEYLKLED 549
+LTKLD+S+ + IL D +L++LK+L + +N+ V + + SGL +LE L LE
Sbjct: 105 NLTKLDISENKI---VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEK 161
Query: 550 CKRLQSLP 557
C L S+P
Sbjct: 162 CN-LTSIP 168
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 82/186 (44%), Gaps = 26/186 (13%)
Query: 298 MECLQELFLDETDIKEMPL-SIEHLSGLILLTLKYCKNLSSLPVTISSLKCLRTLKLSGC 356
+ L++L L++ ++ +P ++ HL GLI+L L++ + + L L+ L++S
Sbjct: 151 LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW 210
Query: 357 SKLKKF-PQIVGMEGLSELYLDGTSITEVPS-SIELLPGIELLNLNDCKNLVRLPRSING 414
L P + L+ L + ++T VP ++ L + LNL S N
Sbjct: 211 PYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNL-----------SYNP 259
Query: 415 LKALKTLSLSGCCKLENVPDTLGQVESLEE-----------LDISGTATRRPPCSIFH-M 462
+ ++ L +L+ + GQ+ +E L++SG S+FH +
Sbjct: 260 ISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSV 319
Query: 463 KNLKTL 468
NL+TL
Sbjct: 320 GNLETL 325
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 80/186 (43%), Gaps = 40/186 (21%)
Query: 368 MEGLSELYLDGTSITEVPS-SIELLPGIELLNLNDCKNLVRLPRS-INGLKALKTLSLSG 425
+ L EL+L I +PS + +P + L+L + K L + + GL L+ L+L G
Sbjct: 106 LSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNL-G 164
Query: 426 CCKLENVPDTLGQVESLEELDISGTATRRPPCSIFHMKNLKTLSFSGCNGPPSTASSLML 485
C L+++P+ V LEEL++SG L+
Sbjct: 165 MCNLKDIPNLTALVR-LEELELSGNRL-----------------------------DLIR 194
Query: 486 P-SLSGLCSLTKLDLSDCGLG--EGAILSDIGNLHSLKALYLSENNFVTLPASI-SGLFN 541
P S GL SL KL L + E D L SL+ L LS NN ++LP + + L
Sbjct: 195 PGSFQGLTSLRKLWLMHAQVATIERNAFDD---LKSLEELNLSHNNLMSLPHDLFTPLHR 251
Query: 542 LEYLKL 547
LE + L
Sbjct: 252 LERVHL 257
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 95/225 (42%), Gaps = 27/225 (12%)
Query: 203 PLNTLKVMKLSHSENLIKTPNFIEVPNLEVLDLEGCTRLREIHSSLVRHNKLILLNLKGC 262
P+NT + +S +I+T F + +LE+L L +LVR K+ + G
Sbjct: 34 PVNTRYLNLQENSIQVIRTDTFKHLRHLEILQLS---------KNLVR--KIEVGAFNGL 82
Query: 263 TSLTTLPGEIFMKSLKTLVLSGCLKLRKFPHVGGSMECLQELFLDETDIKEMP-LSIEHL 321
SL TL E+F L T+ L K L+EL+L I+ +P + +
Sbjct: 83 PSLNTL--ELFDNRLTTVPTQAFEYLSK----------LRELWLRNNPIESIPSYAFNRV 130
Query: 322 SGLILLTLKYCKNLSSLP-VTISSLKCLRTLKLSGCSKLKKFPQIVGMEGLSELYLDGTS 380
L L L K L + L LR L L C+ LK P + + L EL L G
Sbjct: 131 PSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCN-LKDIPNLTALVRLEELELSGNR 189
Query: 381 ITEV-PSSIELLPGIELLNLNDCKNLVRLPRSINGLKALKTLSLS 424
+ + P S + L + L L + + + LK+L+ L+LS
Sbjct: 190 LDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLS 234
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 80/186 (43%), Gaps = 40/186 (21%)
Query: 368 MEGLSELYLDGTSITEVPS-SIELLPGIELLNLNDCKNLVRLPRS-INGLKALKTLSLSG 425
+ L EL+L I +PS + +P + L+L + K L + + GL L+ L+L G
Sbjct: 106 LSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNL-G 164
Query: 426 CCKLENVPDTLGQVESLEELDISGTATRRPPCSIFHMKNLKTLSFSGCNGPPSTASSLML 485
C L+++P+ V LEEL++SG L+
Sbjct: 165 MCNLKDIPNLTALVR-LEELELSGNRL-----------------------------DLIR 194
Query: 486 P-SLSGLCSLTKLDLSDCGLG--EGAILSDIGNLHSLKALYLSENNFVTLPASI-SGLFN 541
P S GL SL KL L + E D L SL+ L LS NN ++LP + + L
Sbjct: 195 PGSFQGLTSLRKLWLMHAQVATIERNAFDD---LKSLEELNLSHNNLMSLPHDLFTPLHR 251
Query: 542 LEYLKL 547
LE + L
Sbjct: 252 LERVHL 257
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 95/225 (42%), Gaps = 27/225 (12%)
Query: 203 PLNTLKVMKLSHSENLIKTPNFIEVPNLEVLDLEGCTRLREIHSSLVRHNKLILLNLKGC 262
P+NT + +S +I+T F + +LE+L L +LVR K+ + G
Sbjct: 34 PVNTRYLNLQENSIQVIRTDTFKHLRHLEILQLS---------KNLVR--KIEVGAFNGL 82
Query: 263 TSLTTLPGEIFMKSLKTLVLSGCLKLRKFPHVGGSMECLQELFLDETDIKEMP-LSIEHL 321
SL TL E+F L T+ L K L+EL+L I+ +P + +
Sbjct: 83 PSLNTL--ELFDNRLTTVPTQAFEYLSK----------LRELWLRNNPIESIPSYAFNRV 130
Query: 322 SGLILLTLKYCKNLSSLP-VTISSLKCLRTLKLSGCSKLKKFPQIVGMEGLSELYLDGTS 380
L L L K L + L LR L L C+ LK P + + L EL L G
Sbjct: 131 PSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCN-LKDIPNLTALVRLEELELSGNR 189
Query: 381 ITEV-PSSIELLPGIELLNLNDCKNLVRLPRSINGLKALKTLSLS 424
+ + P S + L + L L + + + LK+L+ L+LS
Sbjct: 190 LDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLS 234
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 384 VPSSIELLPGIELLNLNDCKNLV-RLPRSINGLKALKTLSLSGCCKLENVPDTLGQVESL 442
+PSS+ LP + L + NLV +P +I L L L ++ +PD L Q+++L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 443 EELDISGTA-TRRPPCSIFHMKNLKTLSFSG 472
LD S A + P SI + NL ++F G
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDG 158
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 96/354 (27%), Positives = 160/354 (45%), Gaps = 48/354 (13%)
Query: 237 GCTRLREIHSSLVRHNKLILLNLKGCTSLTTLPGEIFMKSLKTLVLSGCLKLRKFPHVGG 296
+RLR+ L R + LN G +SL LP L++LV S C L + P +
Sbjct: 61 AVSRLRDC---LDRQAHELELNNLGLSSLPELPPH-----LESLVAS-CNSLTELPELPQ 111
Query: 297 SMECLQELFLDETDIK---EMPLSIEHL--SGLILLTLKYCKN---LSSLPVTISSLKCL 348
S L+ L +D ++K ++P +E+L S L L +N L + V +SLK L
Sbjct: 112 S---LKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKL 168
Query: 349 RTLKLS------GCSKLKKFPQIVGMEGLSELYLDGTSITEVPSSIELLPGIELLNLNDC 402
L S G ++L++ P++ + L+ +Y D S+ ++P LP + L ++
Sbjct: 169 PDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPD----LP-LSLESIVAG 223
Query: 403 KNLVRLPRSINGLKALKTLSLSGCCKLENVPDTLGQVESLEELDISGTATRRPPCSIFHM 462
N++ + L L T+ L+ +PD +E+L D T P S+ +
Sbjct: 224 NNILEELPELQNLPFLTTIYADNNL-LKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFL 282
Query: 463 KNLKTLSFSGCNG-PPS----TASSLMLPSLSGL-CSLTKLDLSDCGLGEGAILSDIGNL 516
+ + FSG + PP+ ASS + SL L SL +L++S+ L E L
Sbjct: 283 DVSENI-FSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALP----- 336
Query: 517 HSLKALYLSENNFVTLPASISGLFNLEYLKLEDCKRLQSLPQLPPNVHNVRLNG 570
L+ L S N+ +P NL+ L +E L+ P +P +V ++R+N
Sbjct: 337 PRLERLIASFNHLAEVPELPQ---NLKQLHVE-YNPLREFPDIPESVEDLRMNS 386
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 36.2 bits (82), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 70/161 (43%), Gaps = 13/161 (8%)
Query: 394 IELLNLNDCKNL-VRLPRSINGLKALKTLSLSGCCKLENVPDTLGQVESLEELDISGTAT 452
+E L+L+D L V P + GL L TL L C E P + +L+ L +
Sbjct: 81 LEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNL 140
Query: 453 RRPPCSIFH-MKNLKTLSFSGCNGPPSTASSLMLPSLSGLCSLTKLDLSDCGLGE--GAI 509
+ P + F + NL L G N PS + GL SL +L L +
Sbjct: 141 QALPDNTFRDLGNLTHLFLHG-NRIPSVPEH----AFRGLHSLDRLLLHQNHVARVHPHA 195
Query: 510 LSDIGNLHSLKALYLSENNFVTLPASI-SGLFNLEYLKLED 549
D+G L +L YL NN LPA + L +L+YL+L D
Sbjct: 196 FRDLGRLMTL---YLFANNLSMLPAEVLVPLRSLQYLRLND 233
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 73/188 (38%), Gaps = 55/188 (29%)
Query: 373 ELYLDGTSITEVPSSIELLPGIELLNLNDCKNLVRLPRSINGLKALKTLSLSGCCKLENV 432
++L G I+ VP++ + C+NL L N L + + +G
Sbjct: 35 RIFLHGNRISYVPAA----------SFQSCRNLTILWLHSNALAGIDAAAFTG------- 77
Query: 433 PDTLGQVESLEELDISGTATRRPPCSIFHMKNLKTLSFSGCNGPPSTASSLMLPSLSGLC 492
+ LE+LD+S A L+ + P+T GL
Sbjct: 78 ------LTLLEQLDLSDNA------------QLRVVD-------PTT--------FRGLG 104
Query: 493 SLTKLDLSDCGLGE-GAILSDIGNLHSLKALYLSENNFVTLP-ASISGLFNLEYLKLEDC 550
L L L CGL E G L L +L+ LYL +NN LP + L NL +L L
Sbjct: 105 HLHTLHLDRCGLQELGPGL--FRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHG- 161
Query: 551 KRLQSLPQ 558
R+ S+P+
Sbjct: 162 NRIPSVPE 169
>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure
pdb|2P1N|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1N|E Chain E, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1O|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1P|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1Q|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|3C6N|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3C6O|B Chain B, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
Length = 594
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 27/38 (71%)
Query: 488 LSGLCSLTKLDLSDCGLGEGAILSDIGNLHSLKALYLS 525
LSG SL KL++ DC G+ A+L++ L ++++L++S
Sbjct: 477 LSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMS 514
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 49/98 (50%), Gaps = 6/98 (6%)
Query: 439 VESLEELDISGTATRRPPCSIF-HMKNLKTLSFSGCNGPPSTASSLMLPSLSGLCSLTKL 497
+E L LDIS T T+ IF + +L TL +G + +T S++ + +LT L
Sbjct: 418 LEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV----FANTTNLTFL 473
Query: 498 DLSDCGLGEGAILSDIGNLHSLKALYLSENNFVTLPAS 535
DLS C L E LH L+ L +S NN + L +S
Sbjct: 474 DLSKCQL-EQISWGVFDTLHRLQLLNMSHNNLLFLDSS 510
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 49/98 (50%), Gaps = 6/98 (6%)
Query: 439 VESLEELDISGTATRRPPCSIF-HMKNLKTLSFSGCNGPPSTASSLMLPSLSGLCSLTKL 497
+E L LDIS T T+ IF + +L TL +G + +T S++ + +LT L
Sbjct: 423 LEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV----FANTTNLTFL 478
Query: 498 DLSDCGLGEGAILSDIGNLHSLKALYLSENNFVTLPAS 535
DLS C L E LH L+ L +S NN + L +S
Sbjct: 479 DLSKCQL-EQISWGVFDTLHRLQLLNMSHNNLLFLDSS 515
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 2/121 (1%)
Query: 350 TLKLSGCSKLKKFPQIVGMEGLSELYLDGTSITEVPSSIELLPGIELLNLNDCKNLVRLP 409
L LS I + L+ LYL+G S+TE+P+ I+ L + +L+L+ + L LP
Sbjct: 228 ALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLP 286
Query: 410 RSINGLKALKTLSLSGCCKLENVPDTLGQVESLEELDISGTATRRPPCSIFHMKNLKTLS 469
+ LK + +P G + +L+ L + G + I K++ L
Sbjct: 287 AELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLI 345
Query: 470 F 470
F
Sbjct: 346 F 346
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 494 LTKLDLSDCGLGEGAILSDIGNLHSLKALYLSENNFVTLPASISGLFNLEYLKLED 549
LT+L L+ L E + ++I NL +L+ L LS N +LPA + F L+Y D
Sbjct: 249 LTRLYLNGNSLTE--LPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFD 302
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 71/175 (40%), Gaps = 20/175 (11%)
Query: 380 SITEVPSSIELLPGIELL-NLNDCKNLVRLPRSINGLKALKTLSLSGCCKLEN---VP-D 434
+ T S L P IEL N D N L K L S+ +EN +P D
Sbjct: 164 TATNSAVSTPLTPKIELFANGKDEANQALLQH-----KKLSQYSIDEDDDIENRMVMPKD 218
Query: 435 TLGQVESLEELDISGTATRRPPCSIFHMKNLKTLSFSGCNGPPSTASSLMLPS-LSGLCS 493
+ + LD+S +IF L L +G S LP+ + L +
Sbjct: 219 SKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNG-------NSLTELPAEIKNLSN 271
Query: 494 LTKLDLSDCGLGEGAILSDIGNLHSLKALYLSENNFVTLPASISGLFNLEYLKLE 548
L LDLS L ++ +++G+ LK Y +N TLP L NL++L +E
Sbjct: 272 LRVLDLSHNRLT--SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVE 324
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 68/173 (39%), Gaps = 24/173 (13%)
Query: 367 GMEGLSELYLDGTSITEVP-SSIELLPGIELLNLNDC--KNLVRLPRSINGLKALKTLSL 423
G+E + E+YL ++ +S L+P ++ L L KN+ P L+ L L L
Sbjct: 428 GLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDL 487
Query: 424 SGCCKLENVPDTLGQVESLEELDISGTATRRPPCSIFHMKNLKTLSFSGCNGPPSTASSL 483
S D L +E LE LD+ NL L G P
Sbjct: 488 SNNNIANINDDMLEGLEKLEILDL-------------QHNNLARLWKHANPGGP------ 528
Query: 484 MLPSLSGLCSLTKLDLSDCGLGEGAILSDIGNLHSLKALYLSENNFVTLPASI 536
+ L GL L L+L G E + +L LK + L NN TLPAS+
Sbjct: 529 -IYFLKGLSHLHILNLESNGFDEIPV-EVFKDLFELKIIDLGLNNLNTLPASV 579
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 25/103 (24%)
Query: 347 CLRTLKLSGCSKLKKFPQIVGMEGLSELYLDGTSITEVPSSIELLPGIELLNLNDCK--- 403
CL T+ LK P+ + + ++ELYLDG T VP + + L++L++ +
Sbjct: 10 CLDTVVRCSNKGLKVLPKGIPRD-VTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRIST 68
Query: 404 -------NLVRL--------------PRSINGLKALKTLSLSG 425
N+ +L PR+ +GLK+L+ LSL G
Sbjct: 69 LSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHG 111
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 68/173 (39%), Gaps = 24/173 (13%)
Query: 367 GMEGLSELYLDGTSITEVP-SSIELLPGIELLNLNDC--KNLVRLPRSINGLKALKTLSL 423
G+E + E+YL ++ +S L+P ++ L L KN+ P L+ L L L
Sbjct: 433 GLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDL 492
Query: 424 SGCCKLENVPDTLGQVESLEELDISGTATRRPPCSIFHMKNLKTLSFSGCNGPPSTASSL 483
S D L +E LE LD+ NL L G P
Sbjct: 493 SNNNIANINDDMLEGLEKLEILDL-------------QHNNLARLWKHANPGGP------ 533
Query: 484 MLPSLSGLCSLTKLDLSDCGLGEGAILSDIGNLHSLKALYLSENNFVTLPASI 536
+ L GL L L+L G E + +L LK + L NN TLPAS+
Sbjct: 534 -IYFLKGLSHLHILNLESNGFDEIPV-EVFKDLFELKIIDLGLNNLNTLPASV 584
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 68/173 (39%), Gaps = 24/173 (13%)
Query: 367 GMEGLSELYLDGTSITEVP-SSIELLPGIELLNLNDC--KNLVRLPRSINGLKALKTLSL 423
G+E + E+YL ++ +S L+P ++ L L KN+ P L+ L L L
Sbjct: 438 GLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDL 497
Query: 424 SGCCKLENVPDTLGQVESLEELDISGTATRRPPCSIFHMKNLKTLSFSGCNGPPSTASSL 483
S D L +E LE LD+ NL L G P
Sbjct: 498 SNNNIANINDDMLEGLEKLEILDL-------------QHNNLARLWKHANPGGP------ 538
Query: 484 MLPSLSGLCSLTKLDLSDCGLGEGAILSDIGNLHSLKALYLSENNFVTLPASI 536
+ L GL L L+L G E + +L LK + L NN TLPAS+
Sbjct: 539 -IYFLKGLSHLHILNLESNGFDEIPV-EVFKDLFELKIIDLGLNNLNTLPASV 589
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 487 SLSGLCSLTKLDLSDCGLGEGAILSDIGNLHSLKALYLSENNFVTLPASISGLFNLEYLK 546
+++GL S+ LDL+ + + ++ + L +L+ LYL N + + ++GL NL+YL
Sbjct: 102 AIAGLQSIKTLDLTSTQITD---VTPLAGLSNLQVLYLDLNQITNI-SPLAGLTNLQYLS 157
Query: 547 LEDCK 551
+ + +
Sbjct: 158 IGNAQ 162
>pdb|1NSI|A Chain A, Human Inducible Nitric Oxide Synthase, Zn-Bound, L-Arg
Complex
pdb|1NSI|B Chain B, Human Inducible Nitric Oxide Synthase, Zn-Bound, L-Arg
Complex
pdb|1NSI|C Chain C, Human Inducible Nitric Oxide Synthase, Zn-Bound, L-Arg
Complex
pdb|1NSI|D Chain D, Human Inducible Nitric Oxide Synthase, Zn-Bound, L-Arg
Complex
pdb|2NSI|A Chain A, Human Inducible Nitric Oxide Synthase, Zn-free, Seitu
Complex
pdb|2NSI|B Chain B, Human Inducible Nitric Oxide Synthase, Zn-free, Seitu
Complex
pdb|2NSI|C Chain C, Human Inducible Nitric Oxide Synthase, Zn-free, Seitu
Complex
pdb|2NSI|D Chain D, Human Inducible Nitric Oxide Synthase, Zn-free, Seitu
Complex
Length = 431
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 69/189 (36%), Gaps = 43/189 (22%)
Query: 101 RHVLTKNAGSEVVEGMIIDDHFFPENEMHLSAKAFSLMTNLRLLKIGNVQLPKGLEYLSN 160
RHV KN GS GM D L KA ++T +G++ PK L
Sbjct: 10 RHVRIKNWGS----GMTFQDT--------LHHKAKGILTCRSKSCLGSIMTPKSLTRGPR 57
Query: 161 KLRLLVWHQYPLKSLPSNLQLDKIVEFEMCY------SRIEELWKGI----KPLNTLKVM 210
K P + L + +EF Y ++IEE + K + T
Sbjct: 58 D-----------KPTPPDELLPQAIEFVNQYYGSFKEAKIEEHLARVEAVTKEIETTGTY 106
Query: 211 KLSHSENLIKTPNF----------IEVPNLEVLDLEGCTRLREIHSSLVRHNKLILLNLK 260
+L+ E + T I+ NL+V D C+ RE+ + RH + N
Sbjct: 107 QLTGDELIFATKQAWRNAPRCIGRIQWSNLQVFDARSCSTAREMFEHICRHVRYSTNNGN 166
Query: 261 GCTSLTTLP 269
+++T P
Sbjct: 167 IRSAITVFP 175
>pdb|4NOS|A Chain A, Human Inducible Nitric Oxide Synthase With Inhibitor
pdb|4NOS|B Chain B, Human Inducible Nitric Oxide Synthase With Inhibitor
pdb|4NOS|C Chain C, Human Inducible Nitric Oxide Synthase With Inhibitor
pdb|4NOS|D Chain D, Human Inducible Nitric Oxide Synthase With Inhibitor
Length = 427
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 69/189 (36%), Gaps = 43/189 (22%)
Query: 101 RHVLTKNAGSEVVEGMIIDDHFFPENEMHLSAKAFSLMTNLRLLKIGNVQLPKGLEYLSN 160
RHV KN GS GM D L KA ++T +G++ PK L
Sbjct: 2 RHVRIKNWGS----GMTFQDT--------LHHKAKGILTCRSKSCLGSIMTPKSLTRGPR 49
Query: 161 KLRLLVWHQYPLKSLPSNLQLDKIVEFEMCY------SRIEELWKGI----KPLNTLKVM 210
K P + L + +EF Y ++IEE + K + T
Sbjct: 50 D-----------KPTPPDELLPQAIEFVNQYYGSFKEAKIEEHLARVEAVTKEIETTGTY 98
Query: 211 KLSHSENLIKTPNF----------IEVPNLEVLDLEGCTRLREIHSSLVRHNKLILLNLK 260
+L+ E + T I+ NL+V D C+ RE+ + RH + N
Sbjct: 99 QLTGDELIFATKQAWRNAPRCIGRIQWSNLQVFDARSCSTAREMFEHICRHVRYSTNNGN 158
Query: 261 GCTSLTTLP 269
+++T P
Sbjct: 159 IRSAITVFP 167
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 10/89 (11%)
Query: 462 MKNLKTLSFSGCNGPPSTASSLMLPSLSGLCSLTKLDLSDCGLGEGAILS--DIGNLHSL 519
+K+LK L+F+ G + S + LPSL L DLS GL S D G + SL
Sbjct: 348 LKSLKRLTFTSNKGG-NAFSEVDLPSLEFL------DLSRNGLSFKGCCSQSDFGTI-SL 399
Query: 520 KALYLSENNFVTLPASISGLFNLEYLKLE 548
K L LS N +T+ ++ GL LE+L +
Sbjct: 400 KYLDLSFNGVITMSSNFLGLEQLEHLDFQ 428
>pdb|3E7G|A Chain A, Structure Of Human Inosox With Inhibitor Ar-C95791
pdb|3E7G|B Chain B, Structure Of Human Inosox With Inhibitor Ar-C95791
pdb|3E7G|C Chain C, Structure Of Human Inosox With Inhibitor Ar-C95791
pdb|3E7G|D Chain D, Structure Of Human Inosox With Inhibitor Ar-C95791
Length = 424
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 69/189 (36%), Gaps = 43/189 (22%)
Query: 101 RHVLTKNAGSEVVEGMIIDDHFFPENEMHLSAKAFSLMTNLRLLKIGNVQLPKGLEYLSN 160
RHV KN GS GM D L KA ++T +G++ PK L
Sbjct: 2 RHVRIKNWGS----GMTFQDT--------LHHKAKGILTCRSKSCLGSIMTPKSLTRGPR 49
Query: 161 KLRLLVWHQYPLKSLPSNLQLDKIVEFEMCY------SRIEELWKGI----KPLNTLKVM 210
K P + L + +EF Y ++IEE + K + T
Sbjct: 50 D-----------KPTPPDELLPQAIEFVNQYYGSFKEAKIEEHLARVEAVTKEIETTGTY 98
Query: 211 KLSHSENLIKTPNF----------IEVPNLEVLDLEGCTRLREIHSSLVRHNKLILLNLK 260
+L+ E + T I+ NL+V D C+ RE+ + RH + N
Sbjct: 99 QLTGDELIFATKQAWRNAPRCIGRIQWSNLQVFDARSCSTAREMFEHICRHVRYSTNNGN 158
Query: 261 GCTSLTTLP 269
+++T P
Sbjct: 159 IRSAITVFP 167
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 40/86 (46%), Gaps = 13/86 (15%)
Query: 475 GPPSTASSLMLPS----------LSGLCSLTKLDLSDCGLGEGAILS--DIGNLHSLKAL 522
G PS+A+ L L S L LTKL LS GL S D G SLK L
Sbjct: 25 GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT-SLKYL 83
Query: 523 YLSENNFVTLPASISGLFNLEYLKLE 548
LS N +T+ ++ GL LE+L +
Sbjct: 84 DLSFNGVITMSSNFLGLEQLEHLDFQ 109
>pdb|3EJ8|A Chain A, Structure Of Double Mutant Of Human Inos Oxygenase Domain
With Bound Immidazole
pdb|3EJ8|B Chain B, Structure Of Double Mutant Of Human Inos Oxygenase Domain
With Bound Immidazole
pdb|3EJ8|C Chain C, Structure Of Double Mutant Of Human Inos Oxygenase Domain
With Bound Immidazole
pdb|3EJ8|D Chain D, Structure Of Double Mutant Of Human Inos Oxygenase Domain
With Bound Immidazole
Length = 424
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 69/189 (36%), Gaps = 43/189 (22%)
Query: 101 RHVLTKNAGSEVVEGMIIDDHFFPENEMHLSAKAFSLMTNLRLLKIGNVQLPKGLEYLSN 160
RHV KN GS GM D L KA ++T +G++ PK L
Sbjct: 2 RHVRIKNWGS----GMTFQDT--------LHHKAKGILTCRSKSCLGSIMTPKSLTRGPR 49
Query: 161 KLRLLVWHQYPLKSLPSNLQLDKIVEFEMCY------SRIEELWKGI----KPLNTLKVM 210
K P + L + +EF Y ++IEE + K + T
Sbjct: 50 D-----------KPTPPDELLPQAIEFVNQYYGSFKEAKIEEHLARVEAVTKEIETTGTY 98
Query: 211 KLSHSENLIKTPNF----------IEVPNLEVLDLEGCTRLREIHSSLVRHNKLILLNLK 260
+L+ E + T I+ NL+V D C+ RE+ + RH + N
Sbjct: 99 QLTGDELIFATKQAWRNAPRCIGRIQWSNLQVFDARSCSTAREMFEHICRHVRYSTNNGN 158
Query: 261 GCTSLTTLP 269
+++T P
Sbjct: 159 IRSAITVFP 167
>pdb|1E7Q|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase S107a
Length = 321
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 34/75 (45%)
Query: 595 DSLKLLGKNDLATSMLREHLEAVSAPDSKLSIVVPGSEIPKWFMYQNEGSSITVTRPSYL 654
D L LL + E ++ V +K+ +V + P F+YQN + ++
Sbjct: 37 DELNLLDSRAVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQ 96
Query: 655 HNVNKVVGYAVCCVF 669
++VNK++ C++
Sbjct: 97 NDVNKLLFLGASCIY 111
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 93/368 (25%), Positives = 147/368 (39%), Gaps = 45/368 (12%)
Query: 200 GIKPLNTLKVMKLSHSENL---------IKTPNFIEVPNLEVLDLEGCTR---LREIHSS 247
GI L + V L + E+L I P NL+VLD + R+ +S
Sbjct: 115 GISNLEFIPVHNLENLESLHLGSNHISSINLPENFPTQNLKVLDFQNNAIHYISRKDTNS 174
Query: 248 LVRHNKLILLNLKGCTSLTTLPGEIFMKSLKTLVLSGCLKLRKFPHVGGSMECLQELFL- 306
L + L L N G PG K ++L G L L G LQ L+L
Sbjct: 175 LEQATNLSL-NFNGNDIKGIEPGAFISKIFQSLKFGGSLNLFII-FKGLQNSTLQSLWLG 232
Query: 307 --DETDIKEMPLSIEHLSGLILLTLKYCKNLSSLPVTISSLKCLRTLKLSGCSKLKKFPQ 364
++TD + LT + L + V +L+ R LS S + F +
Sbjct: 233 TFEDTDDQ-------------YLTSATFEGLCDMSVESINLQKHRFSDLSS-STFRCFTR 278
Query: 365 IVGMEGLSELYLDGTSITEVPSSIELLPGIE--LLNLNDCKNLVRLPRSINGLKALKTLS 422
+ EL L + +PS IE + ++ +LN N L ++ + +L+ L
Sbjct: 279 V------QELDLTAAHLNGLPSGIEGMNSLKKLVLNANSFDQLCQINAA--SFPSLRDLY 330
Query: 423 LSGCC-KLENVPDTLGQVESLEELDISGTATRRPPCSIFHMKNLKTLSFSGCNGPPSTAS 481
+ G KL+ L ++E+L++LD+S + C +KNL+ L + N +
Sbjct: 331 IKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQY--LNLSYNEPL 388
Query: 482 SLMLPSLSGLCSLTKLDLSDCGLGEGAILSDIGNLHSLKALYLSENNFVTLPAS-ISGLF 540
L + L LD++ L A S NLH L+ L LS T ++GL
Sbjct: 389 GLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQ 448
Query: 541 NLEYLKLE 548
+L +L L+
Sbjct: 449 DLRHLNLQ 456
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 516 LHSLKALYLSENNFVTLPASI-SGLFNLEYLKLEDCKRLQSLP 557
L L+ LYL++N TLPA I L NLE L + D K LQ+LP
Sbjct: 60 LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK-LQALP 101
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 78/177 (44%), Gaps = 33/177 (18%)
Query: 130 LSAKAFSLMTNLRLLKIGNVQLP----------KGLEYL---SNKLRLL---VWHQY--- 170
L +KAF +T LRLL + + +L K LE L NKL+ L V+ Q
Sbjct: 52 LPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNL 111
Query: 171 --------PLKSLPSNL--QLDKIVEFEMCYSRIEELWKGI-KPLNTLKVMKLSHSENLI 219
LKSLP + L K+ + Y+ ++ L KG+ L +LK ++L ++ L
Sbjct: 112 AELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRL-YNNQLK 170
Query: 220 KTPN--FIEVPNLEVLDLEGCTRLREIHSSLVRHNKLILLNLKGCTSLTTLPGEIFM 274
+ P F ++ L+ L L+ R + KL +L L+ T G I+M
Sbjct: 171 RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIYM 227
>pdb|4H09|A Chain A, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|B Chain B, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|C Chain C, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|D Chain D, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|E Chain E, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
Length = 379
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 10/109 (9%)
Query: 259 LKGCTSLTTLPGEIFMKSLKTLVLSGCLKLRKFPHVGGSMECLQ-ELFLDETDIKEMPLS 317
L+ CT+L TL +K++ L+ SGC L K ++E L+ +F D + + L
Sbjct: 259 LQNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVVXDNSAIETLEPRVFXDCVKLSSVTLP 318
Query: 318 IEHLSGLILLTLKYCKNLSSLPVTISSLKCLRTLKLSGC---SKLKKFP 363
L + + K CK LS TIS K + TL SG S + K+P
Sbjct: 319 -TALKTIQVYAFKNCKALS----TISYPKSI-TLIESGAFEGSSITKYP 361
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 71/176 (40%), Gaps = 36/176 (20%)
Query: 173 KSLPSNLQLDKIVEFEMCYSRIEELWKGIKPLNTLKVMKLSHSE-NLIKTPNFIEVPNLE 231
+SLPS L + + SR+ W + L L + LSH+ N I + F+ VPNL
Sbjct: 35 QSLPSYTALLDLSHNNL--SRLRAEWTPTR-LTNLHSLLLSHNHLNFISSEAFVPVPNLR 91
Query: 232 VLDLEGCTRLREIHSSLVRHNKLILLNLKGCTSLTTLPGEIF--MKSLKTLVLSGCLKLR 289
LDL L TL +F +++L+ L+L +
Sbjct: 92 YLDLSS-------------------------NHLHTLDEFLFSDLQALEVLLLYNNHIVV 126
Query: 290 KFPHVGGSMECLQELFLDETDIKEMPLSI----EHLSGLILLTLKYCKNLSSLPVT 341
+ M LQ+L+L + I P+ + L L+LL L K L LP+T
Sbjct: 127 VDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK-LKKLPLT 181
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 49/93 (52%), Gaps = 5/93 (5%)
Query: 241 LREIHSSLVRHNKLILLNLKGCTSLTTLPGEIFMKSLKTLVLS-GCLKLRKFPHVGGSME 299
++EIH+S +L LNL +L LP ++F + ++L ++ P G +E
Sbjct: 166 IQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG--LE 223
Query: 300 CLQELFLDET-DIKEMPLSIEHLSGLILLTLKY 331
L++L T ++K++P ++E L L+ +L Y
Sbjct: 224 NLKKLRARSTYNLKKLP-TLEKLVALMEASLTY 255
>pdb|1E7R|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase Y136e
Length = 321
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 34/75 (45%)
Query: 595 DSLKLLGKNDLATSMLREHLEAVSAPDSKLSIVVPGSEIPKWFMYQNEGSSITVTRPSYL 654
D L LL + E ++ V +K+ +V + P F+YQN + ++
Sbjct: 37 DELNLLDSRAVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQ 96
Query: 655 HNVNKVVGYAVCCVF 669
++VNK++ C++
Sbjct: 97 NDVNKLLFLGSSCIY 111
>pdb|1E6U|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase
Length = 321
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 34/75 (45%)
Query: 595 DSLKLLGKNDLATSMLREHLEAVSAPDSKLSIVVPGSEIPKWFMYQNEGSSITVTRPSYL 654
D L LL + E ++ V +K+ +V + P F+YQN + ++
Sbjct: 37 DELNLLDSRAVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQ 96
Query: 655 HNVNKVVGYAVCCVF 669
++VNK++ C++
Sbjct: 97 NDVNKLLFLGSSCIY 111
>pdb|1BWS|A Chain A, Crystal Structure Of Gdp-4-Keto-6-Deoxy-D-Mannose
EpimeraseREDUCTASE From Escherichia Coli A Key Enzyme In
The Biosynthesis Of Gdp-L- Fucose
Length = 321
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 34/75 (45%)
Query: 595 DSLKLLGKNDLATSMLREHLEAVSAPDSKLSIVVPGSEIPKWFMYQNEGSSITVTRPSYL 654
D L LL + E ++ V +K+ +V + P F+YQN + ++
Sbjct: 37 DELNLLDSRAVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQ 96
Query: 655 HNVNKVVGYAVCCVF 669
++VNK++ C++
Sbjct: 97 NDVNKLLFLGSSCIY 111
>pdb|1BSV|A Chain A, Gdp-Fucose Synthetase From Escherichia Coli Complex With
Nadph
pdb|1FXS|A Chain A, Gdp-fucose Synthetase From Escherichia Coli Complex With
Nadp
pdb|1GFS|A Chain A, Gdp-Fucose Synthetase From E. Coli
Length = 321
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 34/75 (45%)
Query: 595 DSLKLLGKNDLATSMLREHLEAVSAPDSKLSIVVPGSEIPKWFMYQNEGSSITVTRPSYL 654
D L LL + E ++ V +K+ +V + P F+YQN + ++
Sbjct: 37 DELNLLDSRAVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQ 96
Query: 655 HNVNKVVGYAVCCVF 669
++VNK++ C++
Sbjct: 97 NDVNKLLFLGSSCIY 111
>pdb|1E7S|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase K140r
Length = 321
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 34/75 (45%)
Query: 595 DSLKLLGKNDLATSMLREHLEAVSAPDSKLSIVVPGSEIPKWFMYQNEGSSITVTRPSYL 654
D L LL + E ++ V +K+ +V + P F+YQN + ++
Sbjct: 37 DELNLLDSRAVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQ 96
Query: 655 HNVNKVVGYAVCCVF 669
++VNK++ C++
Sbjct: 97 NDVNKLLFLGSSCIY 111
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 45/89 (50%), Gaps = 10/89 (11%)
Query: 462 MKNLKTLSFSGCNGPPSTASSLMLPSLSGLCSLTKLDLSDCGLGEGAILS--DIGNLHSL 519
+K+LK L+F+ G + S + LPSL L DLS GL S D G SL
Sbjct: 324 LKSLKRLTFTSNKGG-NAFSEVDLPSLEFL------DLSRNGLSFKGCCSQSDFGTT-SL 375
Query: 520 KALYLSENNFVTLPASISGLFNLEYLKLE 548
K L LS N +T+ ++ GL LE+L +
Sbjct: 376 KYLDLSFNGVITMSSNFLGLEQLEHLDFQ 404
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 45/89 (50%), Gaps = 10/89 (11%)
Query: 462 MKNLKTLSFSGCNGPPSTASSLMLPSLSGLCSLTKLDLSDCGLGEGAILS--DIGNLHSL 519
+K+LK L+F+ G + S + LPSL L DLS GL S D G SL
Sbjct: 324 LKSLKRLTFTSNKGG-NAFSEVDLPSLEFL------DLSRNGLSFKGCCSQSDFGTT-SL 375
Query: 520 KALYLSENNFVTLPASISGLFNLEYLKLE 548
K L LS N +T+ ++ GL LE+L +
Sbjct: 376 KYLDLSFNGVITMSSNFLGLEQLEHLDFQ 404
>pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
Length = 272
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 195 EELWKGIKPLNTLKVMKLSHSENLIKTPNFI--EVPNLEVLDLEGCTRLREIHSSLVRHN 252
E LW+ + ++ M LS+S + T + I + L+ L LEG I ++L +++
Sbjct: 46 ESLWQTLDEFR-VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNS 104
Query: 253 KLILLNLKGCTSLTTLPGEIFMKS---LKTLVLSGCL 286
L+ LNL GC+ + + + S L L LS C
Sbjct: 105 NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF 141
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 8/102 (7%)
Query: 122 FFPENEM-HLSAKAFSLMTNLRLLKIGNVQL---PKGLEYLSNKLRLLVWHQYPLKSLPS 177
+ +N++ L F + NL+ L +G+ QL P G+ +L +L L LPS
Sbjct: 46 YLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPS 105
Query: 178 NLQLDKIV---EFEMCYSRIEELWKGIKPLNTLKVMKLSHSE 216
+ D++V E MC +++ EL +GI+ L L + L ++
Sbjct: 106 AV-FDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ 146
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 274 MKSLKTLVL--SGCLKLRKFPHVGGSMECLQELFLDETDIKEMPLSIEHLSGLILLTLKY 331
+ L+TL+L + +L K + M+ LQ+L DI + +S + G T
Sbjct: 347 LTELETLILQMNQLKELSKIAEMTTQMKSLQQL-----DISQNSVSYDEKKGDCSWTKSL 401
Query: 332 CK-NLSSLPVTISSLKCL----RTLKLSGCSKLKKFP-QIVGMEGLSELYLDGTSITEVP 385
N+SS +T + +CL + L L +K+K P Q+V +E L EL + + VP
Sbjct: 402 LSLNMSSNILTDTIFRCLPPRIKVLDLHS-NKIKSIPKQVVKLEALQELNVASNQLKSVP 460
Query: 386 SSI 388
I
Sbjct: 461 DGI 463
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 10/50 (20%)
Query: 512 DIGNLHSLKALYLSENNFVTLPASISGLFNLEYLKLEDCKRLQSLPQLPP 561
D+G L L+ Y+SE F GLFNL+YL L C ++ +P L P
Sbjct: 177 DLGELKKLE--YISEGAF-------EGLFNLKYLNLGMCN-IKDMPNLTP 216
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,603,645
Number of Sequences: 62578
Number of extensions: 961890
Number of successful extensions: 2348
Number of sequences better than 100.0: 92
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 80
Number of HSP's that attempted gapping in prelim test: 2220
Number of HSP's gapped (non-prelim): 168
length of query: 830
length of database: 14,973,337
effective HSP length: 107
effective length of query: 723
effective length of database: 8,277,491
effective search space: 5984625993
effective search space used: 5984625993
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)