Query 044302
Match_columns 830
No_of_seqs 725 out of 4972
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 23:23:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044302.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044302hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 9E-41 3.1E-45 401.8 30.8 441 136-579 197-722 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.6E-40 5.6E-45 399.6 31.9 436 135-578 174-697 (768)
3 3t6q_A CD180 antigen; protein- 100.0 1.4E-39 4.8E-44 382.4 37.8 452 111-572 33-558 (606)
4 3vq2_A TLR4, TOLL-like recepto 100.0 2.9E-39 9.8E-44 379.7 33.6 443 111-572 32-556 (606)
5 1ziw_A TOLL-like receptor 3; i 100.0 3.4E-36 1.2E-40 358.5 42.4 455 111-578 25-600 (680)
6 4eco_A Uncharacterized protein 100.0 3.7E-38 1.3E-42 370.4 23.4 424 111-553 81-600 (636)
7 3t6q_A CD180 antigen; protein- 100.0 1.7E-36 5.8E-41 356.1 36.3 154 140-295 34-199 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 2E-36 6.9E-41 355.5 34.3 425 139-579 32-538 (606)
9 2z63_A TOLL-like receptor 4, v 100.0 1.3E-36 4.3E-41 354.6 30.5 443 112-572 29-529 (570)
10 4ecn_A Leucine-rich repeat pro 100.0 9.9E-37 3.4E-41 364.0 30.0 423 111-553 323-840 (876)
11 3j0a_A TOLL-like receptor 5; m 100.0 9.6E-36 3.3E-40 361.8 34.7 447 111-570 24-556 (844)
12 1ziw_A TOLL-like receptor 3; i 100.0 1.3E-34 4.5E-39 344.8 40.3 435 139-578 25-576 (680)
13 2z63_A TOLL-like receptor 4, v 100.0 1.5E-35 5.3E-40 345.4 30.6 425 139-578 28-510 (570)
14 4eco_A Uncharacterized protein 100.0 5.2E-36 1.8E-40 352.1 23.9 400 161-573 82-599 (636)
15 3j0a_A TOLL-like receptor 5; m 100.0 9.5E-35 3.3E-39 353.0 33.4 425 137-572 22-537 (844)
16 2z81_A CD282 antigen, TOLL-lik 100.0 4.6E-35 1.6E-39 339.8 28.8 418 139-572 26-508 (549)
17 2z81_A CD282 antigen, TOLL-lik 100.0 8.3E-35 2.8E-39 337.6 27.2 420 111-552 26-509 (549)
18 4ecn_A Leucine-rich repeat pro 100.0 1.1E-34 3.8E-39 346.3 26.7 338 222-573 442-839 (876)
19 2z7x_B TOLL-like receptor 1, v 100.0 1.1E-34 3.8E-39 334.1 25.2 417 139-572 21-479 (520)
20 2z7x_B TOLL-like receptor 1, v 100.0 7.2E-33 2.5E-37 318.9 25.3 397 163-579 3-461 (520)
21 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 4.3E-32 1.5E-36 315.2 27.6 415 142-572 34-508 (562)
22 1o6v_A Internalin A; bacterial 100.0 4.3E-31 1.5E-35 299.3 31.3 340 161-551 47-386 (466)
23 3v47_A TOLL-like receptor 5B a 100.0 4.3E-31 1.5E-35 298.8 28.7 133 416-554 275-409 (455)
24 1jl5_A Outer protein YOPM; leu 100.0 4.5E-31 1.5E-35 296.6 26.3 401 111-573 11-428 (454)
25 3v47_A TOLL-like receptor 5B a 100.0 1.9E-30 6.6E-35 293.4 29.8 371 144-531 15-409 (455)
26 1o6v_A Internalin A; bacterial 100.0 5.8E-30 2E-34 290.0 32.9 341 181-572 45-386 (466)
27 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.7E-30 5.8E-35 301.8 29.2 400 161-579 32-490 (562)
28 4g8a_A TOLL-like receptor 4; l 100.0 3.7E-30 1.3E-34 303.9 32.1 422 140-572 53-578 (635)
29 1jl5_A Outer protein YOPM; leu 100.0 3E-30 1E-34 289.9 29.0 358 160-568 11-384 (454)
30 4g8a_A TOLL-like receptor 4; l 100.0 1.3E-29 4.4E-34 299.2 30.7 429 111-552 52-579 (635)
31 3bz5_A Internalin-J, INLJ; leu 100.0 6.5E-29 2.2E-33 279.3 26.7 353 134-557 37-391 (457)
32 4fmz_A Internalin; leucine ric 100.0 1.6E-28 5.4E-33 267.2 28.2 298 162-473 46-343 (347)
33 4fmz_A Internalin; leucine ric 100.0 5.6E-28 1.9E-32 262.8 27.4 306 134-453 39-346 (347)
34 3o6n_A APL1; leucine-rich repe 100.0 3.9E-28 1.3E-32 268.6 25.6 304 180-551 43-350 (390)
35 2id5_A Lingo-1, leucine rich r 100.0 8.9E-28 3E-32 273.2 28.3 309 163-474 14-331 (477)
36 2id5_A Lingo-1, leucine rich r 100.0 1.4E-27 4.6E-32 271.7 27.8 293 253-552 33-332 (477)
37 3bz5_A Internalin-J, INLJ; leu 100.0 5.4E-27 1.8E-31 263.6 27.2 327 155-550 38-365 (457)
38 3oja_B Anopheles plasmodium-re 100.0 3.2E-27 1.1E-31 275.7 25.7 304 180-551 49-356 (597)
39 3o6n_A APL1; leucine-rich repe 99.9 1.2E-26 4.1E-31 256.6 23.8 299 161-504 46-351 (390)
40 3oja_B Anopheles plasmodium-re 99.9 2.1E-25 7.3E-30 260.3 26.2 302 227-572 50-356 (597)
41 1xku_A Decorin; proteoglycan, 99.9 6.8E-25 2.3E-29 236.6 27.6 244 205-477 31-277 (330)
42 1xku_A Decorin; proteoglycan, 99.9 5.3E-25 1.8E-29 237.5 25.9 288 161-473 32-329 (330)
43 2ft3_A Biglycan; proteoglycan, 99.9 4.2E-25 1.4E-29 238.5 24.0 288 161-474 34-331 (332)
44 2ft3_A Biglycan; proteoglycan, 99.9 1.3E-24 4.4E-29 234.6 24.6 292 206-551 34-331 (332)
45 1ogq_A PGIP-2, polygalacturona 99.9 4.9E-25 1.7E-29 235.5 14.0 249 300-557 51-308 (313)
46 1z7x_W Ribonuclease inhibitor; 99.9 6.8E-27 2.3E-31 264.8 -7.6 104 159-262 2-123 (461)
47 1ogq_A PGIP-2, polygalacturona 99.9 2.3E-24 7.8E-29 230.3 11.5 243 184-451 52-302 (313)
48 1z7x_W Ribonuclease inhibitor; 99.9 8.4E-27 2.9E-31 264.0 -8.1 371 181-571 2-437 (461)
49 4fcg_A Uncharacterized protein 99.9 5E-23 1.7E-27 221.2 19.4 218 253-473 82-311 (328)
50 4fcg_A Uncharacterized protein 99.9 4.3E-23 1.5E-27 221.8 18.3 234 160-454 81-315 (328)
51 3ogk_B Coronatine-insensitive 99.9 1.8E-25 6.2E-30 261.5 -2.0 229 318-551 266-524 (592)
52 2z80_A TOLL-like receptor 2, v 99.9 5.2E-23 1.8E-27 224.1 14.5 272 254-552 33-313 (353)
53 3g06_A SSPH2 (leucine-rich rep 99.9 8.2E-22 2.8E-26 228.0 24.9 258 139-453 40-297 (622)
54 3ogk_B Coronatine-insensitive 99.9 4.1E-25 1.4E-29 258.5 -3.5 368 203-572 110-524 (592)
55 2z66_A Variable lymphocyte rec 99.9 5.4E-22 1.8E-26 211.5 20.2 241 303-551 11-259 (306)
56 3zyj_A Leucine-rich repeat-con 99.9 1.4E-21 4.9E-26 219.3 24.2 242 302-552 46-291 (440)
57 3zyi_A Leucine-rich repeat-con 99.9 2E-21 6.8E-26 218.9 23.5 240 303-551 58-301 (452)
58 3o53_A Protein LRIM1, AGAP0063 99.9 2.6E-23 9E-28 222.6 6.3 240 320-576 32-277 (317)
59 2z80_A TOLL-like receptor 2, v 99.9 9.4E-22 3.2E-26 214.1 18.3 268 164-454 35-315 (353)
60 3g06_A SSPH2 (leucine-rich rep 99.9 1.3E-20 4.4E-25 217.9 28.6 258 160-476 40-297 (622)
61 2z66_A Variable lymphocyte rec 99.9 3E-22 1E-26 213.4 13.4 240 164-406 11-262 (306)
62 3zyj_A Leucine-rich repeat-con 99.9 7.9E-21 2.7E-25 213.2 22.9 200 274-474 87-290 (440)
63 3zyi_A Leucine-rich repeat-con 99.9 1E-20 3.5E-25 213.1 23.7 200 274-474 98-301 (452)
64 2p1m_B Transport inhibitor res 99.9 1.6E-24 5.4E-29 253.6 -8.2 271 274-552 210-518 (594)
65 3o53_A Protein LRIM1, AGAP0063 99.9 4.5E-22 1.5E-26 213.0 10.8 264 276-556 11-278 (317)
66 1wwl_A Monocyte differentiatio 99.9 1.6E-22 5.5E-27 216.0 6.9 199 344-551 93-307 (312)
67 1ozn_A Reticulon 4 receptor; N 99.9 6.6E-21 2.3E-25 200.7 18.1 218 255-474 14-236 (285)
68 1ozn_A Reticulon 4 receptor; N 99.9 2.4E-21 8.4E-26 204.1 14.4 217 164-382 15-238 (285)
69 2p1m_B Transport inhibitor res 99.9 1.2E-23 4.2E-28 246.1 -3.8 344 227-573 129-518 (594)
70 3oja_A Leucine-rich immune mol 99.8 1.9E-20 6.7E-25 212.1 17.6 216 321-553 33-250 (487)
71 1wwl_A Monocyte differentiatio 99.8 1.1E-21 3.8E-26 209.4 4.4 203 274-505 94-309 (312)
72 3oja_A Leucine-rich immune mol 99.8 7.3E-21 2.5E-25 215.6 10.2 237 299-552 34-274 (487)
73 1p9a_G Platelet glycoprotein I 99.8 1.3E-18 4.6E-23 183.1 19.8 201 295-551 6-206 (290)
74 2z62_A TOLL-like receptor 4, v 99.8 2.5E-18 8.5E-23 180.1 17.5 198 183-382 29-237 (276)
75 2z62_A TOLL-like receptor 4, v 99.8 5.3E-18 1.8E-22 177.6 19.9 220 187-429 12-237 (276)
76 2o6q_A Variable lymphocyte rec 99.8 1.7E-17 6E-22 172.9 23.0 196 348-551 18-216 (270)
77 1p9a_G Platelet glycoprotein I 99.8 3.4E-18 1.1E-22 180.1 17.6 197 135-333 6-206 (290)
78 2o6q_A Variable lymphocyte rec 99.8 2.6E-17 8.9E-22 171.6 22.2 198 253-475 17-217 (270)
79 1h6u_A Internalin H; cell adhe 99.8 9.2E-18 3.2E-22 178.5 18.2 190 344-551 39-228 (308)
80 3rfs_A Internalin B, repeat mo 99.8 1.2E-17 4.3E-22 174.2 18.0 195 344-552 39-234 (272)
81 2xwt_C Thyrotropin receptor; s 99.8 7.1E-18 2.4E-22 172.5 15.7 203 265-473 23-236 (239)
82 4ay9_X Follicle-stimulating ho 99.7 2.5E-17 8.6E-22 178.6 19.6 235 163-424 12-254 (350)
83 2xwt_C Thyrotropin receptor; s 99.7 1.6E-17 5.6E-22 169.8 16.9 205 359-574 23-239 (239)
84 3rfs_A Internalin B, repeat mo 99.7 2.4E-17 8.3E-22 172.0 17.2 186 342-541 59-247 (272)
85 1h6u_A Internalin H; cell adhe 99.7 2.2E-17 7.6E-22 175.5 16.8 178 342-536 59-236 (308)
86 4ay9_X Follicle-stimulating ho 99.7 5.2E-17 1.8E-21 176.2 18.7 234 303-569 13-254 (350)
87 2ast_B S-phase kinase-associat 99.7 9E-19 3.1E-23 189.1 4.4 99 254-356 49-152 (336)
88 2ca6_A RAN GTPase-activating p 99.7 3.1E-19 1.1E-23 196.7 -0.5 250 301-551 11-314 (386)
89 4glp_A Monocyte differentiatio 99.7 1.3E-17 4.6E-22 177.6 11.7 203 274-506 90-308 (310)
90 2ast_B S-phase kinase-associat 99.7 1.4E-18 4.9E-23 187.5 3.9 200 346-550 70-282 (336)
91 3goz_A Leucine-rich repeat-con 99.7 1.5E-18 5.2E-23 189.2 4.0 248 282-530 5-297 (362)
92 3m19_A Variable lymphocyte rec 99.7 2E-16 6.8E-21 163.0 19.3 175 370-552 15-191 (251)
93 4glp_A Monocyte differentiatio 99.7 4.4E-17 1.5E-21 173.6 13.7 207 321-552 90-306 (310)
94 2ca6_A RAN GTPase-activating p 99.7 1.5E-18 5.1E-23 191.2 1.2 235 224-474 28-314 (386)
95 3m19_A Variable lymphocyte rec 99.7 2.1E-15 7.1E-20 155.3 19.0 152 300-453 15-168 (251)
96 3goz_A Leucine-rich repeat-con 99.7 1.4E-17 4.8E-22 181.6 2.7 247 304-551 3-295 (362)
97 3cvr_A Invasion plasmid antige 99.7 5E-16 1.7E-20 177.3 15.1 195 134-347 49-255 (571)
98 1h6t_A Internalin B; cell adhe 99.6 1E-15 3.4E-20 161.2 15.3 165 370-551 47-211 (291)
99 3cvr_A Invasion plasmid antige 99.6 5E-15 1.7E-19 169.1 18.7 178 323-554 60-244 (571)
100 1m9s_A Internalin B; cell inva 99.6 6.3E-15 2.2E-19 170.2 16.4 175 342-533 39-213 (605)
101 1h6t_A Internalin B; cell adhe 99.6 1E-14 3.6E-19 153.4 15.2 150 342-505 64-213 (291)
102 4ezg_A Putative uncharacterize 99.6 1.5E-14 5.1E-19 142.9 14.8 151 319-474 41-192 (197)
103 2o6s_A Variable lymphocyte rec 99.6 2.7E-14 9.3E-19 142.4 16.6 172 373-558 11-183 (208)
104 1m9s_A Internalin B; cell inva 99.6 8.2E-15 2.8E-19 169.2 14.2 171 296-505 40-210 (605)
105 2v9t_B SLIT homolog 2 protein 99.6 3.6E-14 1.2E-18 142.6 16.3 149 372-551 14-163 (220)
106 4ezg_A Putative uncharacterize 99.6 1E-14 3.5E-19 144.0 12.0 149 370-530 45-194 (197)
107 1dce_A Protein (RAB geranylger 99.6 6.3E-17 2.1E-21 185.8 -5.3 203 296-547 346-567 (567)
108 2o6s_A Variable lymphocyte rec 99.6 3.8E-14 1.3E-18 141.3 15.3 171 143-321 11-188 (208)
109 3e6j_A Variable lymphocyte rec 99.5 9.6E-14 3.3E-18 140.5 16.6 150 371-552 21-171 (229)
110 1xeu_A Internalin C; cellular 99.5 1.4E-14 4.9E-19 149.9 10.2 159 375-551 25-183 (263)
111 2v70_A SLIT-2, SLIT homolog 2 99.5 1E-13 3.5E-18 139.3 15.5 149 372-551 14-164 (220)
112 2xot_A Amphoterin-induced prot 99.5 7.4E-14 2.5E-18 151.9 14.0 171 372-551 21-200 (361)
113 1xeu_A Internalin C; cellular 99.5 2.1E-14 7.2E-19 148.6 9.3 151 367-534 39-189 (263)
114 2v9t_B SLIT homolog 2 protein 99.5 3.1E-13 1.1E-17 135.8 14.4 148 303-474 15-163 (220)
115 1dce_A Protein (RAB geranylger 99.5 1.6E-15 5.4E-20 174.2 -3.1 119 348-469 443-566 (567)
116 2v70_A SLIT-2, SLIT homolog 2 99.5 4.3E-13 1.5E-17 134.7 14.4 148 163-312 14-166 (220)
117 2xot_A Amphoterin-induced prot 99.5 3.2E-13 1.1E-17 146.8 14.1 170 163-356 21-199 (361)
118 3e6j_A Variable lymphocyte rec 99.4 1.7E-12 5.8E-17 131.3 17.4 126 349-476 22-148 (229)
119 2ell_A Acidic leucine-rich nuc 99.4 5.7E-13 2E-17 127.7 8.6 128 392-550 24-157 (168)
120 2ell_A Acidic leucine-rich nuc 99.3 2.2E-12 7.5E-17 123.6 9.3 133 181-315 23-163 (168)
121 2je0_A Acidic leucine-rich nuc 99.3 1.2E-12 4E-17 122.8 6.9 127 416-549 17-149 (149)
122 3sb4_A Hypothetical leucine ri 99.3 1E-11 3.5E-16 133.1 13.8 259 181-469 48-327 (329)
123 3sb4_A Hypothetical leucine ri 99.3 4.8E-12 1.6E-16 135.7 10.9 100 439-546 225-327 (329)
124 4b8c_D Glucose-repressible alc 99.3 6.9E-13 2.4E-17 157.1 4.6 137 223-362 219-357 (727)
125 4b8c_D Glucose-repressible alc 99.3 8.9E-13 3E-17 156.2 4.9 153 290-450 215-369 (727)
126 1w8a_A SLIT protein; signaling 99.3 2.4E-11 8.1E-16 119.1 13.4 80 372-453 11-91 (192)
127 1w8a_A SLIT protein; signaling 99.3 9E-12 3.1E-16 122.2 10.3 121 142-262 11-136 (192)
128 2je0_A Acidic leucine-rich nuc 99.3 9.4E-12 3.2E-16 116.6 9.5 125 346-471 17-148 (149)
129 2wfh_A SLIT homolog 2 protein 99.2 3.9E-11 1.3E-15 117.6 12.4 122 163-286 13-137 (193)
130 1a9n_A U2A', U2A'; complex (nu 99.2 2E-11 6.9E-16 117.8 9.4 128 344-474 17-151 (176)
131 2wfh_A SLIT homolog 2 protein 99.2 9.3E-11 3.2E-15 114.9 14.0 123 374-504 15-138 (193)
132 1a9n_A U2A', U2A'; complex (nu 99.2 1.8E-11 6.3E-16 118.1 8.3 135 364-530 14-153 (176)
133 2a5y_B CED-4; apoptosis; HET: 99.2 3.1E-12 1E-16 146.8 2.2 83 1-85 364-473 (549)
134 2o6r_A Variable lymphocyte rec 99.2 2.3E-10 7.7E-15 110.5 14.6 40 512-551 95-135 (177)
135 4fdw_A Leucine rich hypothetic 99.1 1.7E-09 5.8E-14 118.5 21.3 216 229-472 158-379 (401)
136 4fs7_A Uncharacterized protein 99.1 2.5E-09 8.6E-14 117.5 22.5 308 172-549 59-375 (394)
137 4fdw_A Leucine rich hypothetic 99.1 2.3E-09 7.9E-14 117.4 22.0 221 276-530 158-383 (401)
138 2o6r_A Variable lymphocyte rec 99.1 1.4E-09 4.7E-14 104.9 14.4 127 372-505 10-137 (177)
139 1ds9_A Outer arm dynein; leuci 99.1 5.7E-13 2E-17 131.5 -9.7 62 411-474 43-104 (198)
140 1ds9_A Outer arm dynein; leuci 99.0 4.7E-12 1.6E-16 124.9 -5.5 110 295-407 44-155 (198)
141 3g39_A Variable lymphocyte rec 99.0 2.3E-09 7.8E-14 102.6 11.9 103 442-552 11-114 (170)
142 2r9u_A Variable lymphocyte rec 99.0 3.2E-09 1.1E-13 101.9 12.1 101 443-551 15-116 (174)
143 4fs7_A Uncharacterized protein 99.0 2.6E-08 8.8E-13 109.4 21.0 324 127-468 59-393 (394)
144 3g39_A Variable lymphocyte rec 99.0 2.7E-09 9.1E-14 102.1 11.4 102 371-474 11-113 (170)
145 2r9u_A Variable lymphocyte rec 99.0 3.2E-09 1.1E-13 102.0 11.6 101 372-474 15-116 (174)
146 4gt6_A Cell surface protein; l 98.8 3.9E-07 1.3E-11 99.9 22.9 21 128-148 52-73 (394)
147 2ifg_A High affinity nerve gro 98.7 7.4E-08 2.5E-12 103.7 11.3 102 373-475 12-115 (347)
148 3sfz_A APAF-1, apoptotic pepti 98.6 5.2E-09 1.8E-13 132.9 1.6 82 2-83 366-452 (1249)
149 4gt6_A Cell surface protein; l 98.6 2.3E-06 7.9E-11 93.7 22.5 112 194-308 51-169 (394)
150 1vt4_I APAF-1 related killer D 98.6 5.4E-09 1.8E-13 122.7 0.8 75 2-76 357-436 (1221)
151 2ifg_A High affinity nerve gro 98.6 9.3E-08 3.2E-12 102.9 10.0 63 488-551 52-114 (347)
152 3un9_A NLR family member X1; l 98.6 3.1E-09 1.1E-13 115.2 -2.4 85 369-453 155-252 (372)
153 3un9_A NLR family member X1; l 98.6 5.8E-09 2E-13 113.1 -1.2 69 437-506 180-253 (372)
154 2ra8_A Uncharacterized protein 98.5 1.6E-08 5.6E-13 108.6 2.1 141 408-551 164-318 (362)
155 2ra8_A Uncharacterized protein 98.5 1E-07 3.5E-12 102.4 7.0 82 317-400 134-227 (362)
156 4h09_A Hypothetical leucine ri 98.4 3.2E-05 1.1E-09 84.0 23.9 118 111-237 46-167 (379)
157 4h09_A Hypothetical leucine ri 98.4 7.8E-05 2.7E-09 80.9 26.5 74 183-260 47-121 (379)
158 1z6t_A APAF-1, apoptotic prote 98.4 6.5E-08 2.2E-12 112.3 1.5 107 3-109 367-497 (591)
159 3e4g_A ATP synthase subunit S, 97.8 1.3E-05 4.4E-10 75.6 3.6 86 182-267 61-154 (176)
160 1io0_A Tropomodulin; LRR prote 97.7 1.9E-06 6.7E-11 83.2 -2.1 59 492-550 93-161 (185)
161 1io0_A Tropomodulin; LRR prote 97.6 1.9E-05 6.5E-10 76.2 3.2 14 491-504 150-163 (185)
162 3e4g_A ATP synthase subunit S, 97.6 1.1E-05 3.8E-10 75.9 0.5 17 538-554 137-153 (176)
163 3rw6_A Nuclear RNA export fact 97.2 0.00024 8.1E-09 72.2 5.1 40 513-553 192-233 (267)
164 3rw6_A Nuclear RNA export fact 96.9 0.00054 1.8E-08 69.5 4.6 17 250-267 168-184 (267)
165 3rfe_A Platelet glycoprotein I 95.1 0.022 7.6E-07 50.7 5.0 52 164-216 12-66 (130)
166 3rfe_A Platelet glycoprotein I 94.9 0.027 9.3E-07 50.1 5.2 52 143-194 12-67 (130)
167 1pgv_A TMD-1, tropomodulin TMD 94.2 0.023 7.7E-07 54.4 2.9 11 492-502 157-167 (197)
168 1pgv_A TMD-1, tropomodulin TMD 93.5 0.013 4.6E-07 56.0 -0.1 60 491-550 69-136 (197)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=9e-41 Score=401.82 Aligned_cols=441 Identities=20% Similarity=0.213 Sum_probs=244.9
Q ss_pred hCCCCCceEEEcCcccCCC---ccccccCcceEEEecCCCC-CCCCCC-CCCCceEEEccCCChhhcccCCCCCCcccEE
Q 044302 136 SLMTNLRLLKIGNVQLPKG---LEYLSNKLRLLVWHQYPLK-SLPSNL-QLDKIVEFEMCYSRIEELWKGIKPLNTLKVM 210 (830)
Q Consensus 136 ~~l~~Lr~L~l~~~~l~~~---~~~l~~~Lr~L~l~~~~l~-~lp~~~-~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L 210 (830)
..+++|++|++++|.+.+. +..+ ++|++|++++|.+. .+|..+ .+++|++|++++|.+....... .+++|++|
T Consensus 197 ~~l~~L~~L~Ls~n~l~~~~~~l~~l-~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L 274 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNNFSTGIPFLGDC-SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL-PLKSLQYL 274 (768)
T ss_dssp TTCTTCCEEECCSSCCCSCCCBCTTC-CSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC-CCTTCCEE
T ss_pred ccCCcCCEEECcCCcCCCCCcccccC-CCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc-ccCCCCEE
Confidence 4555666666665555432 2222 25566666655554 234333 5555555555555554321111 45555555
Q ss_pred EccCCCCCCCCC-CCCC-CCceeEEeeeCCcccccccccccCCCCccEEecCCCCCCccCCcc-cc-cCcccEEeccCcc
Q 044302 211 KLSHSENLIKTP-NFIE-VPNLEVLDLEGCTRLREIHSSLVRHNKLILLNLKGCTSLTTLPGE-IF-MKSLKTLVLSGCL 286 (830)
Q Consensus 211 ~L~~~~~~~~~~-~~~~-l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~c~~l~~lp~~-~~-l~~L~~L~L~~~~ 286 (830)
++++|.....+| .+.. +++|++|++++|.....+|..++++++|++|++++|.....+|.. +. +++|++|++++|.
T Consensus 275 ~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~ 354 (768)
T 3rgz_A 275 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 354 (768)
T ss_dssp ECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSE
T ss_pred ECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCc
Confidence 555554332322 2333 255555555555444455555555555555555553333344443 22 5555555555555
Q ss_pred cccccCCCCCccc-cceEeeccccccc-ccccchhc--ccCCcEEeccCCCCCCCCccccccCccCcEEeecCCCCCCcC
Q 044302 287 KLRKFPHVGGSME-CLQELFLDETDIK-EMPLSIEH--LSGLILLTLKYCKNLSSLPVTISSLKCLRTLKLSGCSKLKKF 362 (830)
Q Consensus 287 ~~~~~~~~~~~l~-~L~~L~L~~~~i~-~l~~~l~~--l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~ 362 (830)
+...+|..+..++ +|+.|++++|.+. .+|..+.. +++|+.|++++|.....+|..+..+++|++|++++|.....+
T Consensus 355 l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 434 (768)
T 3rgz_A 355 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI 434 (768)
T ss_dssp EEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCC
T ss_pred cCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcc
Confidence 5445555554444 5555555555544 33333333 445555555555544445555555555555555555444443
Q ss_pred Cc-ccCCCCCcEEEecCCccc-ccCcccCCCCCccEEecCCccCcccccccccCCCCCCEEeccCCCCCCccCcccCCCC
Q 044302 363 PQ-IVGMEGLSELYLDGTSIT-EVPSSIELLPGIELLNLNDCKNLVRLPRSINGLKALKTLSLSGCCKLENVPDTLGQVE 440 (830)
Q Consensus 363 ~~-~~~l~~L~~L~L~~~~i~-~l~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~ 440 (830)
|. +..+++|+.|++++|.+. .+|..+..+++|+.|++++|.....+|..+..+++|++|++++|.....+|..++.++
T Consensus 435 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 514 (768)
T 3rgz_A 435 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 514 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred cHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCC
Confidence 33 334555555555555554 4444455555555555555555545555555555555555555555545555555555
Q ss_pred CccEEecCCCccc-CCCcccccCCCCcEEEcCCCCCCCCCC---------------------------------------
Q 044302 441 SLEELDISGTATR-RPPCSIFHMKNLKTLSFSGCNGPPSTA--------------------------------------- 480 (830)
Q Consensus 441 ~L~~L~L~~n~i~-~l~~~l~~l~~L~~L~L~~~~~~~~~~--------------------------------------- 480 (830)
+|++|++++|.+. .+|..+..+++|++|++++|+.....+
T Consensus 515 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (768)
T 3rgz_A 515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL 594 (768)
T ss_dssp TCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEE
T ss_pred CCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccc
Confidence 5555555555544 444455555555555555544321100
Q ss_pred --------------------------ccccCCCCCCCCccCeecCCCCCCCCCccccccCCCCCCCEEeCCCCCCc-ccC
Q 044302 481 --------------------------SSLMLPSLSGLCSLTKLDLSDCGLGEGAILSDIGNLHSLKALYLSENNFV-TLP 533 (830)
Q Consensus 481 --------------------------~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~-~lp 533 (830)
.+...+.+..+++|+.|++++|+++ +.+|..++.+++|+.|+|++|.++ .+|
T Consensus 595 ~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~-g~ip~~l~~l~~L~~L~Ls~N~l~g~ip 673 (768)
T 3rgz_A 595 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS-GYIPKEIGSMPYLFILNLGHNDISGSIP 673 (768)
T ss_dssp ECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCB-SCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred ccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCccc-ccCCHHHhccccCCEEeCcCCccCCCCC
Confidence 1111223667788999999999987 778888999999999999999998 788
Q ss_pred cccCCCCccCEeeccccccccccCCC---CCCcceeeccCCcccccccc
Q 044302 534 ASISGLFNLEYLKLEDCKRLQSLPQL---PPNVHNVRLNGCASLVTLLG 579 (830)
Q Consensus 534 ~~l~~L~~L~~L~L~~c~~l~~lp~l---p~sL~~L~i~~C~~L~~~~~ 579 (830)
..+..+++|+.|+|++|+....+|.. .++|+.|+++++.--..+|.
T Consensus 674 ~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 674 DEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred hHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCC
Confidence 88999999999999998776677752 25788889888865444443
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.6e-40 Score=399.56 Aligned_cols=436 Identities=21% Similarity=0.185 Sum_probs=365.0
Q ss_pred hhCCCCCceEEEcCcccCCCc--cccccCcceEEEecCCCCCCCCCC-CCCCceEEEccCCChh-hcccCCCCCCcccEE
Q 044302 135 FSLMTNLRLLKIGNVQLPKGL--EYLSNKLRLLVWHQYPLKSLPSNL-QLDKIVEFEMCYSRIE-ELWKGIKPLNTLKVM 210 (830)
Q Consensus 135 f~~l~~Lr~L~l~~~~l~~~~--~~l~~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~i~-~l~~~~~~l~~L~~L 210 (830)
+.++++|+.|++++|.+.+.. ..+ .+|++|++++|.+...++.+ .+++|++|++++|.++ .+|..+..+++|++|
T Consensus 174 ~~~l~~L~~L~Ls~n~l~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 252 (768)
T 3rgz_A 174 SDGCGELKHLAISGNKISGDVDVSRC-VNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLL 252 (768)
T ss_dssp TTCCTTCCEEECCSSEEESCCBCTTC-TTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEE
T ss_pred hccCCCCCEEECCCCcccccCCcccC-CcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEE
Confidence 677777888888777765432 233 48888999888887644446 7888999999999887 467788889999999
Q ss_pred EccCCCCCCCCCCCCCCCceeEEeeeCCcccccccccccCC-CCccEEecCCCCCCccCCcccc-cCcccEEeccCcccc
Q 044302 211 KLSHSENLIKTPNFIEVPNLEVLDLEGCTRLREIHSSLVRH-NKLILLNLKGCTSLTTLPGEIF-MKSLKTLVLSGCLKL 288 (830)
Q Consensus 211 ~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~l~~l-~~L~~L~L~~c~~l~~lp~~~~-l~~L~~L~L~~~~~~ 288 (830)
++++|.....+|.. .+++|++|++++|.....+|..+... ++|++|++++|.....+|..+. +++|++|++++|.+.
T Consensus 253 ~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 331 (768)
T 3rgz_A 253 NISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 331 (768)
T ss_dssp ECCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred ECCCCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCccc
Confidence 99988765555555 78899999999887766888888775 8999999998665557777766 899999999998887
Q ss_pred cccCCC-CCccccceEeeccccccc-ccccchhccc-CCcEEeccCCCCCCCCcccccc--CccCcEEeecCCCCCCcCC
Q 044302 289 RKFPHV-GGSMECLQELFLDETDIK-EMPLSIEHLS-GLILLTLKYCKNLSSLPVTISS--LKCLRTLKLSGCSKLKKFP 363 (830)
Q Consensus 289 ~~~~~~-~~~l~~L~~L~L~~~~i~-~l~~~l~~l~-~L~~L~L~~~~~~~~~~~~l~~--l~~L~~L~L~~~~~~~~~~ 363 (830)
..+|.. ++.+++|++|++++|.+. .+|..+..++ +|+.|++++|......|..+.. +++|++|++++|.....+|
T Consensus 332 ~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p 411 (768)
T 3rgz_A 332 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 411 (768)
T ss_dssp EECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECC
T ss_pred CcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccC
Confidence 677755 888999999999999988 8888888887 8999999999887777777766 8899999999998887777
Q ss_pred c-ccCCCCCcEEEecCCccc-ccCcccCCCCCccEEecCCccCcccccccccCCCCCCEEeccCCCCCCccCcccCCCCC
Q 044302 364 Q-IVGMEGLSELYLDGTSIT-EVPSSIELLPGIELLNLNDCKNLVRLPRSINGLKALKTLSLSGCCKLENVPDTLGQVES 441 (830)
Q Consensus 364 ~-~~~l~~L~~L~L~~~~i~-~l~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~ 441 (830)
. +..+++|+.|++++|.+. .+|..+..+++|+.|++++|.....+|..+..+++|++|++++|.....+|..++.+++
T Consensus 412 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 491 (768)
T 3rgz_A 412 PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTN 491 (768)
T ss_dssp GGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred HHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCC
Confidence 5 778999999999999998 77888999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEecCCCccc-CCCcccccCCCCcEEEcCCCCCCCCCCccccCCCCCCCCccCeecCCCCCCCCCccc----------
Q 044302 442 LEELDISGTATR-RPPCSIFHMKNLKTLSFSGCNGPPSTASSLMLPSLSGLCSLTKLDLSDCGLGEGAIL---------- 510 (830)
Q Consensus 442 L~~L~L~~n~i~-~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~---------- 510 (830)
|++|++++|.+. .+|..++.+++|++|++++|+.... ....+..+++|+.|++++|.++ +.+|
T Consensus 492 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-----~p~~l~~l~~L~~L~Ls~N~l~-g~ip~~~~~~~~~~ 565 (768)
T 3rgz_A 492 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN-----IPAELGDCRSLIWLDLNTNLFN-GTIPAAMFKQSGKI 565 (768)
T ss_dssp CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEE-----CCGGGGGCTTCCEEECCSSEEE-SBCCGGGGTTTTCB
T ss_pred CCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCc-----CCHHHcCCCCCCEEECCCCccC-CcCChHHhcccchh
Confidence 999999999998 8899999999999999999986532 2234889999999999999775 2233
Q ss_pred ------------------------------------------------------------cccCCCCCCCEEeCCCCCCc
Q 044302 511 ------------------------------------------------------------SDIGNLHSLKALYLSENNFV 530 (830)
Q Consensus 511 ------------------------------------------------------------~~l~~l~~L~~L~L~~n~l~ 530 (830)
..+..+++|+.|+|++|+++
T Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~ 645 (768)
T 3rgz_A 566 AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS 645 (768)
T ss_dssp CCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCB
T ss_pred hhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCccc
Confidence 23455788999999999999
Q ss_pred -ccCcccCCCCccCEeeccccccccccCCC---CCCcceeeccCCccccccc
Q 044302 531 -TLPASISGLFNLEYLKLEDCKRLQSLPQL---PPNVHNVRLNGCASLVTLL 578 (830)
Q Consensus 531 -~lp~~l~~L~~L~~L~L~~c~~l~~lp~l---p~sL~~L~i~~C~~L~~~~ 578 (830)
.+|..+..+++|+.|+|++|.....+|.- .++|+.|+++++.--..++
T Consensus 646 g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip 697 (768)
T 3rgz_A 646 GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP 697 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCC
T ss_pred ccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCC
Confidence 88999999999999999999877788852 2689999999886444444
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.4e-39 Score=382.42 Aligned_cols=452 Identities=20% Similarity=0.209 Sum_probs=342.3
Q ss_pred ccEEEEEeeccCCCccccccChHhhhCCCCCceEEEcCcccC----CCccccccCcceEEEecCCCCCC-CCCC-CCCCc
Q 044302 111 EVVEGMIIDDHFFPENEMHLSAKAFSLMTNLRLLKIGNVQLP----KGLEYLSNKLRLLVWHQYPLKSL-PSNL-QLDKI 184 (830)
Q Consensus 111 ~~v~~i~l~~~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~l~----~~~~~l~~~Lr~L~l~~~~l~~l-p~~~-~l~~L 184 (830)
..++.+.+... .+ ..+.+.+|.++++|++|++++|.+. ..+..++ +|++|++++|.+..+ |..+ .+.+|
T Consensus 33 ~~l~~L~Ls~n-~i---~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L 107 (606)
T 3t6q_A 33 NSTECLEFSFN-VL---PTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQH-RLDTLVLTANPLIFMAETALSGPKAL 107 (606)
T ss_dssp TTCCEEECTTC-CC---SEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCT-TCCEEECTTCCCSEECTTTTSSCTTC
T ss_pred CcCcEEEccCC-cc---CcCChhHhccCccceEEECCCCccceeChhhccCcc-ccCeeeCCCCcccccChhhhcccccc
Confidence 35777777666 33 4566789999999999999999874 4466665 999999999999887 4455 89999
Q ss_pred eEEEccCCChhhc-ccCCCCCCcccEEEccCCCCCC-CCCCCCCCCceeEEeeeCCcccccccccccCCCCcc--EEecC
Q 044302 185 VEFEMCYSRIEEL-WKGIKPLNTLKVMKLSHSENLI-KTPNFIEVPNLEVLDLEGCTRLREIHSSLVRHNKLI--LLNLK 260 (830)
Q Consensus 185 ~~L~L~~n~i~~l-~~~~~~l~~L~~L~L~~~~~~~-~~~~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~--~L~L~ 260 (830)
++|++++|.++.+ +..+..+++|++|++++|.... ..+.+..+++|++|++++|......+..++.+++|+ .|+++
T Consensus 108 ~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~ 187 (606)
T 3t6q_A 108 KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLN 187 (606)
T ss_dssp CEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECT
T ss_pred cEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecC
Confidence 9999999999998 6789999999999999998655 447777799999999999876666677889999999 89999
Q ss_pred CCCCCccCCcccc-cC----------------------------------------------------cccEEeccCccc
Q 044302 261 GCTSLTTLPGEIF-MK----------------------------------------------------SLKTLVLSGCLK 287 (830)
Q Consensus 261 ~c~~l~~lp~~~~-l~----------------------------------------------------~L~~L~L~~~~~ 287 (830)
+|. +..++...+ .. +|+.|++++|.+
T Consensus 188 ~n~-l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l 266 (606)
T 3t6q_A 188 GND-IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF 266 (606)
T ss_dssp TCC-CCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCC
T ss_pred CCc-cCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCcc
Confidence 854 444433222 33 566666666666
Q ss_pred ccccCCCCCccccceEeecccccccccccchhcccCCcEEeccCCCCCCCCccccccCccCcEEeecCCCCCCcCCc--c
Q 044302 288 LRKFPHVGGSMECLQELFLDETDIKEMPLSIEHLSGLILLTLKYCKNLSSLPVTISSLKCLRTLKLSGCSKLKKFPQ--I 365 (830)
Q Consensus 288 ~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~--~ 365 (830)
....+..++.+++|++|++++|.++.+|..+..+++|++|++++|......|..+..+++|++|++++|.....++. +
T Consensus 267 ~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 346 (606)
T 3t6q_A 267 FNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCL 346 (606)
T ss_dssp SSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTT
T ss_pred CccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhh
Confidence 66666667788888888888888888888888888888888888877777777788888888888888877655544 5
Q ss_pred cCCCCCcEEEecCCccccc---CcccCCCCCccEEecCCccCcccccccccCCCCCCEEeccCCCCCCccCc-ccCCCCC
Q 044302 366 VGMEGLSELYLDGTSITEV---PSSIELLPGIELLNLNDCKNLVRLPRSINGLKALKTLSLSGCCKLENVPD-TLGQVES 441 (830)
Q Consensus 366 ~~l~~L~~L~L~~~~i~~l---~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~-~l~~l~~ 441 (830)
..+++|+.|++++|.+..+ +..+..+++|+.|++++|......|..+..+++|++|++++|......+. .+..+++
T Consensus 347 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 426 (606)
T 3t6q_A 347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHL 426 (606)
T ss_dssp TTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTT
T ss_pred hccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCccc
Confidence 6788888888888888755 55677888888888888887777777788888888888888877665543 3777888
Q ss_pred ccEEecCCCcccCC-CcccccCCCCcEEEcCCCCCCCCCCccccCCCCCCCCccCeecCCCCCCCCCccccccCCCCCCC
Q 044302 442 LEELDISGTATRRP-PCSIFHMKNLKTLSFSGCNGPPSTASSLMLPSLSGLCSLTKLDLSDCGLGEGAILSDIGNLHSLK 520 (830)
Q Consensus 442 L~~L~L~~n~i~~l-~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~ 520 (830)
|++|++++|.+... |..+..+++|++|++++|+...... .....+..+++|+.|++++|.++ +..+..+..+++|+
T Consensus 427 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~ 503 (606)
T 3t6q_A 427 LKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNI--QKTNSLQTLGRLEILVLSFCDLS-SIDQHAFTSLKMMN 503 (606)
T ss_dssp CCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEE--CSSCGGGGCTTCCEEECTTSCCC-EECTTTTTTCTTCC
T ss_pred CCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCcccc--ccchhhccCCCccEEECCCCccC-ccChhhhccccCCC
Confidence 88888888887744 5566778888888888887532100 01123677888888888888886 55567788888888
Q ss_pred EEeCCCCCCcc-cCcccCCCCccCEeeccccccccccCCC---CCCcceeeccCCc
Q 044302 521 ALYLSENNFVT-LPASISGLFNLEYLKLEDCKRLQSLPQL---PPNVHNVRLNGCA 572 (830)
Q Consensus 521 ~L~L~~n~l~~-lp~~l~~L~~L~~L~L~~c~~l~~lp~l---p~sL~~L~i~~C~ 572 (830)
.|++++|+++. .|..+..+++| .|++++|+.....|.. .++|+.|++++++
T Consensus 504 ~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 504 HVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp EEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCC
T ss_pred EEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCC
Confidence 88888888874 45677888888 8888888543332321 2467777777665
No 4
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.9e-39 Score=379.73 Aligned_cols=443 Identities=20% Similarity=0.227 Sum_probs=322.9
Q ss_pred ccEEEEEeeccCCCccccccChHhhhCCCCCceEEEcCcccCC----CccccccCcceEEEecCCCCCC-CCCC-CCCCc
Q 044302 111 EVVEGMIIDDHFFPENEMHLSAKAFSLMTNLRLLKIGNVQLPK----GLEYLSNKLRLLVWHQYPLKSL-PSNL-QLDKI 184 (830)
Q Consensus 111 ~~v~~i~l~~~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~l~~----~~~~l~~~Lr~L~l~~~~l~~l-p~~~-~l~~L 184 (830)
..++.+.+... . ...+.+.+|.++++|++|++++|.+.. .+..++ +|++|++++|.++.+ |..+ .+.+|
T Consensus 32 ~~l~~L~Ls~n-~---l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L 106 (606)
T 3vq2_A 32 SSTKNIDLSFN-P---LKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLH-HLSNLILTGNPIQSFSPGSFSGLTSL 106 (606)
T ss_dssp TTCCEEECTTS-C---CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT-TCCEEECTTCCCCCCCTTSSTTCTTC
T ss_pred CCcCEEECCCC-C---cCEeChhhccCCccCcEEeCCCCcccccCHHHhhchh-hcCEeECCCCcccccChhhcCCcccC
Confidence 45777777665 3 345666789999999999999988643 355554 899999999999888 5566 88999
Q ss_pred eEEEccCCChhhcc-cCCCCCCcccEEEccCCCCCC-CCC-CCCCCCceeEEeeeCCcccccccccccCCCCcc----EE
Q 044302 185 VEFEMCYSRIEELW-KGIKPLNTLKVMKLSHSENLI-KTP-NFIEVPNLEVLDLEGCTRLREIHSSLVRHNKLI----LL 257 (830)
Q Consensus 185 ~~L~L~~n~i~~l~-~~~~~l~~L~~L~L~~~~~~~-~~~-~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~----~L 257 (830)
++|++++|.++.++ ..++.+++|++|++++|.... .+| .+.++++|++|++++|......+..++.+++|+ +|
T Consensus 107 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L 186 (606)
T 3vq2_A 107 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSL 186 (606)
T ss_dssp CEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEE
T ss_pred CEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhcccccccee
Confidence 99999999998876 578899999999999987553 334 588999999999999766555566666665554 78
Q ss_pred ecCCCCCCccCCcccc-cCcccEEeccCcccc------------------------------------------------
Q 044302 258 NLKGCTSLTTLPGEIF-MKSLKTLVLSGCLKL------------------------------------------------ 288 (830)
Q Consensus 258 ~L~~c~~l~~lp~~~~-l~~L~~L~L~~~~~~------------------------------------------------ 288 (830)
++++ +.++.+|...+ ..+|+.|++++|...
T Consensus 187 ~l~~-n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~ 265 (606)
T 3vq2_A 187 DMSL-NPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDE 265 (606)
T ss_dssp ECTT-CCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEE
T ss_pred eccC-CCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhh
Confidence 8888 55667776655 558888888887542
Q ss_pred ----------cccCCCCCccccceEeecccccccccccchhcccCCcEEeccCCCCCCCCccccccCccCcEEeecCCCC
Q 044302 289 ----------RKFPHVGGSMECLQELFLDETDIKEMPLSIEHLSGLILLTLKYCKNLSSLPVTISSLKCLRTLKLSGCSK 358 (830)
Q Consensus 289 ----------~~~~~~~~~l~~L~~L~L~~~~i~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~ 358 (830)
...|. +..+++|+.|+++++.+..+| .+..+++|+.|++++|.. ..+| .+ .+++|+.|++++|..
T Consensus 266 l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~ 340 (606)
T 3vq2_A 266 FRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKG 340 (606)
T ss_dssp EEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSS
T ss_pred eeccccccccccccc-cccCCCCCEEEecCccchhhh-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcC
Confidence 11122 455677777777777777777 677777788888887776 5666 34 777888888877755
Q ss_pred CCcCCcccCCCCCcEEEecCCccccc---CcccCCCCCccEEecCCccCcccccccccCCCCCCEEeccCCCCCCccC-c
Q 044302 359 LKKFPQIVGMEGLSELYLDGTSITEV---PSSIELLPGIELLNLNDCKNLVRLPRSINGLKALKTLSLSGCCKLENVP-D 434 (830)
Q Consensus 359 ~~~~~~~~~l~~L~~L~L~~~~i~~l---~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~-~ 434 (830)
.... .+..+++|+.|++++|.++.+ |..+..+++|+.|++++|... .+|..+..+++|+.|++++|......+ .
T Consensus 341 ~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 418 (606)
T 3vq2_A 341 SISF-KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFS 418 (606)
T ss_dssp CEEC-CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTT
T ss_pred ccch-hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChh
Confidence 5544 455677888888888877755 666777788888888877643 355677778888888888877776666 5
Q ss_pred ccCCCCCccEEecCCCcccC-CCcccccCCCCcEEEcCCCCCCCCCCccccCCCCCCCCccCeecCCCCCCCCCcccccc
Q 044302 435 TLGQVESLEELDISGTATRR-PPCSIFHMKNLKTLSFSGCNGPPSTASSLMLPSLSGLCSLTKLDLSDCGLGEGAILSDI 513 (830)
Q Consensus 435 ~l~~l~~L~~L~L~~n~i~~-l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l 513 (830)
.+..+++|++|++++|.+.. .|..+..+++|++|++++|+.... .....++.+++|++|++++|.++ +..+..+
T Consensus 419 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~ 493 (606)
T 3vq2_A 419 AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDN----TLSNVFANTTNLTFLDLSKCQLE-QISWGVF 493 (606)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG----EECSCCTTCTTCCEEECTTSCCC-EECTTTT
T ss_pred hhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCc----chHHhhccCCCCCEEECCCCcCC-ccChhhh
Confidence 67778888888888887764 556677788888888888764321 01223677788888888888776 4556677
Q ss_pred CCCCCCCEEeCCCCCCccc-CcccCCCCccCEeeccccccccccCC----CCCCcceeeccCCc
Q 044302 514 GNLHSLKALYLSENNFVTL-PASISGLFNLEYLKLEDCKRLQSLPQ----LPPNVHNVRLNGCA 572 (830)
Q Consensus 514 ~~l~~L~~L~L~~n~l~~l-p~~l~~L~~L~~L~L~~c~~l~~lp~----lp~sL~~L~i~~C~ 572 (830)
..+++|+.|++++|++..+ |..+..+++|++|+|++|+ ++.+|. +|.+|+.|++.+++
T Consensus 494 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 494 DTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp TTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSCC
T ss_pred cccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCCC
Confidence 7888888888888888765 6677778888888888875 556664 45567777777654
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.4e-36 Score=358.47 Aligned_cols=455 Identities=21% Similarity=0.238 Sum_probs=310.8
Q ss_pred ccEEEEEeeccCCCccccccChHhhhCCCCCceEEEcCcccCCC----ccccccCcceEEEecCCCCCCCCC-C-CCCCc
Q 044302 111 EVVEGMIIDDHFFPENEMHLSAKAFSLMTNLRLLKIGNVQLPKG----LEYLSNKLRLLVWHQYPLKSLPSN-L-QLDKI 184 (830)
Q Consensus 111 ~~v~~i~l~~~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~l~~~----~~~l~~~Lr~L~l~~~~l~~lp~~-~-~l~~L 184 (830)
..++.+.+... .+ ..+++.+|.++++|++|++++|.+.+. +..++ +|++|++++|.++.+|.. + .+.+|
T Consensus 25 ~~l~~L~Ls~n-~l---~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~L 99 (680)
T 1ziw_A 25 TNITVLNLTHN-QL---RRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLP-MLKVLNLQHNELSQLSDKTFAFCTNL 99 (680)
T ss_dssp TTCSEEECCSS-CC---CCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCT-TCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCcEEECCCC-CC---CCcCHHHHhCCCcCcEEECCCCccCccCHHHHhccc-CcCEEECCCCccCccChhhhccCCCC
Confidence 46777777665 33 356677899999999999999887543 44554 899999999999999874 5 88999
Q ss_pred eEEEccCCChhhcc-cCCCCCCcccEEEccCCCCCCCCC-CCCCCCceeEEeeeCCcccccccccc--cCCCCccEEecC
Q 044302 185 VEFEMCYSRIEELW-KGIKPLNTLKVMKLSHSENLIKTP-NFIEVPNLEVLDLEGCTRLREIHSSL--VRHNKLILLNLK 260 (830)
Q Consensus 185 ~~L~L~~n~i~~l~-~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~L~~~~~l~~~~~~l--~~l~~L~~L~L~ 260 (830)
++|++++|.++.++ ..+..+++|++|+|++|......+ .+.++++|++|++++|......+..+ ..+++|+.|+++
T Consensus 100 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~ 179 (680)
T 1ziw_A 100 TELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELS 179 (680)
T ss_dssp SEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECT
T ss_pred CEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECC
Confidence 99999999998886 568889999999999987655443 47788889999988865433333333 244667777777
Q ss_pred CCCCCccCCc----------------------------------------------------ccc-c--CcccEEeccCc
Q 044302 261 GCTSLTTLPG----------------------------------------------------EIF-M--KSLKTLVLSGC 285 (830)
Q Consensus 261 ~c~~l~~lp~----------------------------------------------------~~~-l--~~L~~L~L~~~ 285 (830)
+| .++.++. .+. + ++|++|++++|
T Consensus 180 ~n-~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n 258 (680)
T 1ziw_A 180 SN-QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN 258 (680)
T ss_dssp TC-CCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTS
T ss_pred CC-cccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCC
Confidence 64 2322221 111 2 23666666666
Q ss_pred ccccccCCCCCccccceEeeccccccccc-ccchhcccCCcEEeccCCCCCC-----CCcc----ccccCccCcEEeecC
Q 044302 286 LKLRKFPHVGGSMECLQELFLDETDIKEM-PLSIEHLSGLILLTLKYCKNLS-----SLPV----TISSLKCLRTLKLSG 355 (830)
Q Consensus 286 ~~~~~~~~~~~~l~~L~~L~L~~~~i~~l-~~~l~~l~~L~~L~L~~~~~~~-----~~~~----~l~~l~~L~~L~L~~ 355 (830)
.+....+..++.+++|+.|++++|.+..+ |..+..+++|+.|+++++.... .+|. .+..+++|++|++++
T Consensus 259 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~ 338 (680)
T 1ziw_A 259 NLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMED 338 (680)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCS
T ss_pred CcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCC
Confidence 65555555666666666666666666533 2244444444444444322111 1111 334445555555555
Q ss_pred CCCCCcCCc-ccCC----------------------------CCCcEEEecCCccccc-CcccCCCCCccEEecCCccCc
Q 044302 356 CSKLKKFPQ-IVGM----------------------------EGLSELYLDGTSITEV-PSSIELLPGIELLNLNDCKNL 405 (830)
Q Consensus 356 ~~~~~~~~~-~~~l----------------------------~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~L~~~~~l 405 (830)
|......+. +.++ ++|+.|++++|.+..+ |..+..+++|+.|++++|...
T Consensus 339 n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 418 (680)
T 1ziw_A 339 NDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIG 418 (680)
T ss_dssp CCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCE
T ss_pred CccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCc
Confidence 544332222 2223 3566666666666655 456788999999999999887
Q ss_pred cccc-ccccCCCCCCEEeccCCCCCCccCcccCCCCCccEEecCCCccc---CCCcccccCCCCcEEEcCCCCCCCCCCc
Q 044302 406 VRLP-RSINGLKALKTLSLSGCCKLENVPDTLGQVESLEELDISGTATR---RPPCSIFHMKNLKTLSFSGCNGPPSTAS 481 (830)
Q Consensus 406 ~~l~-~~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~n~i~---~l~~~l~~l~~L~~L~L~~~~~~~~~~~ 481 (830)
..+| ..+.++++|++|++++|......+..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|++...
T Consensus 419 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i--- 495 (680)
T 1ziw_A 419 QELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANI--- 495 (680)
T ss_dssp EECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCC---
T ss_pred cccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcC---
Confidence 7665 67888999999999999887777788888899999999988875 5677788889999999998875532
Q ss_pred cccCCCCCCCCccCeecCCCCCCCCC---c----cccccCCCCCCCEEeCCCCCCcccCc-ccCCCCccCEeeccccccc
Q 044302 482 SLMLPSLSGLCSLTKLDLSDCGLGEG---A----ILSDIGNLHSLKALYLSENNFVTLPA-SISGLFNLEYLKLEDCKRL 553 (830)
Q Consensus 482 ~~~l~~l~~l~~L~~L~Ls~~~l~~~---~----~~~~l~~l~~L~~L~L~~n~l~~lp~-~l~~L~~L~~L~L~~c~~l 553 (830)
....+.++++|++|++++|.+... . ....+..+++|+.|+|++|.+..+|. .+..+++|++|++++| .+
T Consensus 496 --~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l 572 (680)
T 1ziw_A 496 --NDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLN-NL 572 (680)
T ss_dssp --CTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CC
T ss_pred --ChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCC-CC
Confidence 222377888889999998887631 1 11236788888999999888888886 4688888999999887 46
Q ss_pred cccCCC----CCCcceeeccCCccccccc
Q 044302 554 QSLPQL----PPNVHNVRLNGCASLVTLL 578 (830)
Q Consensus 554 ~~lp~l----p~sL~~L~i~~C~~L~~~~ 578 (830)
+.+|.- .++|+.|+++++ .|..++
T Consensus 573 ~~l~~~~~~~l~~L~~L~L~~N-~l~~~~ 600 (680)
T 1ziw_A 573 NTLPASVFNNQVSLKSLNLQKN-LITSVE 600 (680)
T ss_dssp CCCCTTTTTTCTTCCEEECTTS-CCCBCC
T ss_pred CcCCHhHhCCCCCCCEEECCCC-cCCccC
Confidence 666641 267888888887 344443
No 6
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.7e-38 Score=370.43 Aligned_cols=424 Identities=14% Similarity=0.161 Sum_probs=254.4
Q ss_pred ccEEEEEeeccCCCccccccChHhhhCCCCCceEEEcCcccC--C-Ccc------ccc----cCcceEEEecCCCCC-CC
Q 044302 111 EVVEGMIIDDHFFPENEMHLSAKAFSLMTNLRLLKIGNVQLP--K-GLE------YLS----NKLRLLVWHQYPLKS-LP 176 (830)
Q Consensus 111 ~~v~~i~l~~~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~l~--~-~~~------~l~----~~Lr~L~l~~~~l~~-lp 176 (830)
.+|+++.+... .. ...++ .+|..+++|++|++++|.+. . .+. .+| ..|| ++++.+.+.. +|
T Consensus 81 ~~V~~L~L~~~-~l--~g~lp-~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~-l~l~~~~l~~~~~ 155 (636)
T 4eco_A 81 GRVTGLSLEGF-GA--SGRVP-DAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR-MHYQKTFVDYDPR 155 (636)
T ss_dssp CCEEEEECTTS-CC--EEEEC-GGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHH-THHHHHHTCCCGG
T ss_pred CCEEEEEecCc-cc--CCcCC-hHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHH-hhHHHhhhccCch
Confidence 47888888776 55 34555 68999999999999999651 0 000 011 1222 2222221111 11
Q ss_pred CCC--------------------CCCCceEEEc--cCCChhhcccCCCCCCcccEEEccCCCCCC---------------
Q 044302 177 SNL--------------------QLDKIVEFEM--CYSRIEELWKGIKPLNTLKVMKLSHSENLI--------------- 219 (830)
Q Consensus 177 ~~~--------------------~l~~L~~L~L--~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~--------------- 219 (830)
..+ ....++.+.+ ..|+++.+|..++.+++|++|+|++|....
T Consensus 156 ~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~ 235 (636)
T 4eco_A 156 EDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYA 235 (636)
T ss_dssp GGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHH
T ss_pred hhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchh
Confidence 100 0011111111 134555566666666666666666665444
Q ss_pred ---CCCCCC--CCCceeEEeeeCCcccccccccccCCCCccEEecCCCCCCc--cCCcccc-c------CcccEEeccCc
Q 044302 220 ---KTPNFI--EVPNLEVLDLEGCTRLREIHSSLVRHNKLILLNLKGCTSLT--TLPGEIF-M------KSLKTLVLSGC 285 (830)
Q Consensus 220 ---~~~~~~--~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~c~~l~--~lp~~~~-l------~~L~~L~L~~~ 285 (830)
.++.+. ++++|++|++++|.....+|..++++++|++|++++|..++ .+|..+. + ++|++|++++|
T Consensus 236 ~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n 315 (636)
T 4eco_A 236 QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN 315 (636)
T ss_dssp HHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS
T ss_pred cccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC
Confidence 233455 66666666666665556666666666666666666644233 3555444 3 66666666666
Q ss_pred ccccccCC--CCCccccceEeeccccccc-ccccchhcccCCcEEeccCCCCCCCCccccccCcc-CcEEeecCCCCCCc
Q 044302 286 LKLRKFPH--VGGSMECLQELFLDETDIK-EMPLSIEHLSGLILLTLKYCKNLSSLPVTISSLKC-LRTLKLSGCSKLKK 361 (830)
Q Consensus 286 ~~~~~~~~--~~~~l~~L~~L~L~~~~i~-~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~-L~~L~L~~~~~~~~ 361 (830)
.+. .+|. .++.+++|+.|++++|.+. .+| .+..+++|+.|++++|... .+|..+..+++ |++|++++|... .
T Consensus 316 ~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~ 391 (636)
T 4eco_A 316 NLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-Y 391 (636)
T ss_dssp CCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-S
T ss_pred cCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-c
Confidence 555 5555 5666666666666666666 666 6666666666666666544 55555666666 666666666654 4
Q ss_pred CCcc-cC--CCCCcEEEecCCcccc-cCcccC-------CCCCccEEecCCccCcccccccccCCCCCCEEeccCCCCCC
Q 044302 362 FPQI-VG--MEGLSELYLDGTSITE-VPSSIE-------LLPGIELLNLNDCKNLVRLPRSINGLKALKTLSLSGCCKLE 430 (830)
Q Consensus 362 ~~~~-~~--l~~L~~L~L~~~~i~~-l~~~~~-------~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~ 430 (830)
+|.. .. +++|+.|++++|.+.. +|..+. .+++|+.|++++|......+..+..+++|++|++++|...
T Consensus 392 lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~- 470 (636)
T 4eco_A 392 IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT- 470 (636)
T ss_dssp CCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-
T ss_pred cchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-
Confidence 4442 22 2356666666666653 344444 5566677777766655332333445667777777776655
Q ss_pred ccCccc-CC-------CCCccEEecCCCcccCCCcccc--cCCCCcEEEcCCCCCCCCCCccccCCCCCCCCccCeecC-
Q 044302 431 NVPDTL-GQ-------VESLEELDISGTATRRPPCSIF--HMKNLKTLSFSGCNGPPSTASSLMLPSLSGLCSLTKLDL- 499 (830)
Q Consensus 431 ~~~~~l-~~-------l~~L~~L~L~~n~i~~l~~~l~--~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~l~~L~~L~L- 499 (830)
.+|... .. +++|++|++++|.+..+|..++ .+++|+.|+|++|++.. ....+..+++|+.|++
T Consensus 471 ~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~------ip~~~~~l~~L~~L~Ls 544 (636)
T 4eco_A 471 EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK------FPTQPLNSSTLKGFGIR 544 (636)
T ss_dssp BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS------CCCGGGGCSSCCEEECC
T ss_pred CcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC------cChhhhcCCCCCEEECC
Confidence 344322 22 2267777777777777776666 67777777777776542 1223556777777777
Q ss_pred -----CCCCCCCCccccccCCCCCCCEEeCCCCCCcccCcccCCCCccCEeeccccccc
Q 044302 500 -----SDCGLGEGAILSDIGNLHSLKALYLSENNFVTLPASISGLFNLEYLKLEDCKRL 553 (830)
Q Consensus 500 -----s~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~c~~l 553 (830)
++|.+. +.+|..+..+++|+.|+|++|.+..+|..+. ++|++|+|++|+..
T Consensus 545 ~N~~ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 545 NQRDAQGNRTL-REWPEGITLCPSLTQLQIGSNDIRKVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp SCBCTTCCBCC-CCCCTTGGGCSSCCEEECCSSCCCBCCSCCC--TTCCEEECCSCTTC
T ss_pred CCcccccCccc-ccChHHHhcCCCCCEEECCCCcCCccCHhHh--CcCCEEECcCCCCc
Confidence 445555 5678888999999999999999999998765 79999999999643
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.7e-36 Score=356.13 Aligned_cols=154 Identities=14% Similarity=0.074 Sum_probs=93.7
Q ss_pred CCceEEEcCcccC----CCccccccCcceEEEecCCCCCC-CCCC-CCCCceEEEccCCChhhc-ccCCCCCCcccEEEc
Q 044302 140 NLRLLKIGNVQLP----KGLEYLSNKLRLLVWHQYPLKSL-PSNL-QLDKIVEFEMCYSRIEEL-WKGIKPLNTLKVMKL 212 (830)
Q Consensus 140 ~Lr~L~l~~~~l~----~~~~~l~~~Lr~L~l~~~~l~~l-p~~~-~l~~L~~L~L~~n~i~~l-~~~~~~l~~L~~L~L 212 (830)
+++.|++++|.+. ..+..++ +|++|++++|.+..+ |..| .+.+|++|++++|.+..+ |..+..+++|++|++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLI-NLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCT-TCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred cCcEEEccCCccCcCChhHhccCc-cceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 5677777777653 2344444 677777777777665 3344 677777777777777665 456677777777777
Q ss_pred cCCCCCCC-CCCCCCCCceeEEeeeCCcccccccccccCCCCccEEecCCCCCCccCCcc-cc-cCccc--EEeccCccc
Q 044302 213 SHSENLIK-TPNFIEVPNLEVLDLEGCTRLREIHSSLVRHNKLILLNLKGCTSLTTLPGE-IF-MKSLK--TLVLSGCLK 287 (830)
Q Consensus 213 ~~~~~~~~-~~~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~c~~l~~lp~~-~~-l~~L~--~L~L~~~~~ 287 (830)
++|..... ...+.++++|++|++++|.....-...+..+++|++|++++ +.++.++.. +. +++|+ .|++++|.+
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~l~L~l~~n~l 191 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQN-NAIHYLSKEDMSSLQQATNLSLNLNGNDI 191 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCS-SCCCEECHHHHHTTTTCCSEEEECTTCCC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEccc-CcccccChhhhhhhcccceeEEecCCCcc
Confidence 77764432 23466777777777777544332223334477777777777 344444332 22 66666 667777666
Q ss_pred ccccCCCC
Q 044302 288 LRKFPHVG 295 (830)
Q Consensus 288 ~~~~~~~~ 295 (830)
....|..+
T Consensus 192 ~~~~~~~~ 199 (606)
T 3t6q_A 192 AGIEPGAF 199 (606)
T ss_dssp CEECTTTT
T ss_pred CccChhHh
Confidence 55554443
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2e-36 Score=355.51 Aligned_cols=425 Identities=16% Similarity=0.137 Sum_probs=298.4
Q ss_pred CCCceEEEcCcccCC----CccccccCcceEEEecCCCCCCCC-CC-CCCCceEEEccCCChhhc-ccCCCCCCcccEEE
Q 044302 139 TNLRLLKIGNVQLPK----GLEYLSNKLRLLVWHQYPLKSLPS-NL-QLDKIVEFEMCYSRIEEL-WKGIKPLNTLKVMK 211 (830)
Q Consensus 139 ~~Lr~L~l~~~~l~~----~~~~l~~~Lr~L~l~~~~l~~lp~-~~-~l~~L~~L~L~~n~i~~l-~~~~~~l~~L~~L~ 211 (830)
++|+.|++++|.+.+ .+..++ +|++|++++|.++.++. .| .+++|++|++++|.++.+ |..+..+++|++|+
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFS-ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCT-TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCcCEEECCCCCcCEeChhhccCCc-cCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 789999999998753 455665 89999999999998854 45 899999999999999988 77899999999999
Q ss_pred ccCCCCCCCC-CCCCCCCceeEEeeeCCcccc-cccccccCCCCccEEecCCCCCCccCCc-ccc-cCcc----cEEecc
Q 044302 212 LSHSENLIKT-PNFIEVPNLEVLDLEGCTRLR-EIHSSLVRHNKLILLNLKGCTSLTTLPG-EIF-MKSL----KTLVLS 283 (830)
Q Consensus 212 L~~~~~~~~~-~~~~~l~~L~~L~L~~~~~l~-~~~~~l~~l~~L~~L~L~~c~~l~~lp~-~~~-l~~L----~~L~L~ 283 (830)
|++|...... ..++++++|++|++++|.... .+|..++++++|++|++++| .++.++. .+. +.+| .+|+++
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~~l~~L~l~ 189 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN-YIQTITVNDLQFLRENPQVNLSLDMS 189 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS-CCCEECTTTTHHHHHCTTCCCEEECT
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC-cceecChhhhhhhhccccccceeecc
Confidence 9999865544 469999999999999986554 67999999999999999995 5555544 333 5554 489999
Q ss_pred CcccccccCCCCCccccceEeeccccccc--ccccc--------------------------------------------
Q 044302 284 GCLKLRKFPHVGGSMECLQELFLDETDIK--EMPLS-------------------------------------------- 317 (830)
Q Consensus 284 ~~~~~~~~~~~~~~l~~L~~L~L~~~~i~--~l~~~-------------------------------------------- 317 (830)
+|.+....+..+... +|+.|++++|.+. .+|..
T Consensus 190 ~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l 268 (606)
T 3vq2_A 190 LNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL 268 (606)
T ss_dssp TCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEE
T ss_pred CCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheec
Confidence 998776666655554 8999999988764 22222
Q ss_pred ------------hhcccCCcEEeccCCCCCCCCccccccCccCcEEeecCCCCCCcCCcccCCCCCcEEEecCCccc-cc
Q 044302 318 ------------IEHLSGLILLTLKYCKNLSSLPVTISSLKCLRTLKLSGCSKLKKFPQIVGMEGLSELYLDGTSIT-EV 384 (830)
Q Consensus 318 ------------l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~i~-~l 384 (830)
+..+++|+.|+++++.. ..+| .+..+++|++|++++|.. +.+|.+ .+++|+.|++++|... .+
T Consensus 269 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~l~-~l~~~~~L~~L~l~~n~l-~~lp~~-~l~~L~~L~l~~n~~~~~~ 344 (606)
T 3vq2_A 269 TYTNDFSDDIVKFHCLANVSAMSLAGVSI-KYLE-DVPKHFKWQSLSIIRCQL-KQFPTL-DLPFLKSLTLTMNKGSISF 344 (606)
T ss_dssp CCCTTCCGGGGSCGGGTTCSEEEEESCCC-CCCC-CCCTTCCCSEEEEESCCC-SSCCCC-CCSSCCEEEEESCSSCEEC
T ss_pred cccccccccccccccCCCCCEEEecCccc-hhhh-hccccccCCEEEcccccC-cccccC-CCCccceeeccCCcCccch
Confidence 33445556666665554 2233 555666666666666665 555555 6666666666666332 22
Q ss_pred CcccCCCCCccEEecCCccCccc--ccccccCCCCCCEEeccCCCCCCccCcccCCCCCccEEecCCCcccCCC--cccc
Q 044302 385 PSSIELLPGIELLNLNDCKNLVR--LPRSINGLKALKTLSLSGCCKLENVPDTLGQVESLEELDISGTATRRPP--CSIF 460 (830)
Q Consensus 385 ~~~~~~l~~L~~L~L~~~~~l~~--l~~~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~n~i~~l~--~~l~ 460 (830)
.+..+++|+.|++++|..... .+..+..+++|++|++++|... .+|..+..+++|++|++++|.+...+ ..+.
T Consensus 345 --~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 421 (606)
T 3vq2_A 345 --KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFL 421 (606)
T ss_dssp --CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTT
T ss_pred --hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhh
Confidence 345666777777776665443 2566667777777777776633 35566777777777777777776554 3566
Q ss_pred cCCCCcEEEcCCCCCCCCCCccccCCCCCCCCccCeecCCCCCCCCCccccccCCCCCCCEEeCCCCCCccc-CcccCCC
Q 044302 461 HMKNLKTLSFSGCNGPPSTASSLMLPSLSGLCSLTKLDLSDCGLGEGAILSDIGNLHSLKALYLSENNFVTL-PASISGL 539 (830)
Q Consensus 461 ~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~l-p~~l~~L 539 (830)
.+++|++|++++|..... ....+.++++|++|++++|.+....++..+..+++|+.|++++|.++.+ |..+..+
T Consensus 422 ~l~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 496 (606)
T 3vq2_A 422 SLEKLLYLDISYTNTKID-----FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTL 496 (606)
T ss_dssp TCTTCCEEECTTSCCEEC-----CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred ccccCCEEECcCCCCCcc-----chhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhccc
Confidence 677777777777764432 2223667777888888887776334667777778888888888877755 4557777
Q ss_pred CccCEeeccccccccccCC-C--CCCcceeeccCCcccccccc
Q 044302 540 FNLEYLKLEDCKRLQSLPQ-L--PPNVHNVRLNGCASLVTLLG 579 (830)
Q Consensus 540 ~~L~~L~L~~c~~l~~lp~-l--p~sL~~L~i~~C~~L~~~~~ 579 (830)
++|++|+|++|+.....|. + .++|+.|++++|. +++++.
T Consensus 497 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~ 538 (606)
T 3vq2_A 497 HRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKG 538 (606)
T ss_dssp TTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEES
T ss_pred ccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-CcccCH
Confidence 8888888887754433343 1 2467777777775 555543
No 9
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.3e-36 Score=354.59 Aligned_cols=443 Identities=20% Similarity=0.234 Sum_probs=263.5
Q ss_pred cEEEEEeeccCCCccccccChHhhhCCCCCceEEEcCcccC----CCccccccCcceEEEecCCCCCCCC-CC-CCCCce
Q 044302 112 VVEGMIIDDHFFPENEMHLSAKAFSLMTNLRLLKIGNVQLP----KGLEYLSNKLRLLVWHQYPLKSLPS-NL-QLDKIV 185 (830)
Q Consensus 112 ~v~~i~l~~~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~l~----~~~~~l~~~Lr~L~l~~~~l~~lp~-~~-~l~~L~ 185 (830)
.++.+.+... . ...+.+.+|.++++|++|++++|.+. ..+..++ +|++|++++|.++.+|. .+ .+.+|+
T Consensus 29 ~l~~L~Ls~n-~---l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (570)
T 2z63_A 29 STKNLDLSFN-P---LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS-HLSTLILTGNPIQSLALGAFSGLSSLQ 103 (570)
T ss_dssp SCCEEECCSC-C---CCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCT-TCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred cccEEEccCC-c---cCccChhHhhCCCCceEEECCCCcCCccCcccccCch-hCCEEeCcCCcCCccCHhhhcCccccc
Confidence 4555555444 2 23445556777777777777776653 2244443 67777777777766653 33 667777
Q ss_pred EEEccCCChhhccc-CCCCCCcccEEEccCCCCCC-C-CCCCCCCCceeEEeeeCCcccccccccccCCCCc----cEEe
Q 044302 186 EFEMCYSRIEELWK-GIKPLNTLKVMKLSHSENLI-K-TPNFIEVPNLEVLDLEGCTRLREIHSSLVRHNKL----ILLN 258 (830)
Q Consensus 186 ~L~L~~n~i~~l~~-~~~~l~~L~~L~L~~~~~~~-~-~~~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L----~~L~ 258 (830)
+|++++|.++.++. .++.+++|++|++++|.... . +..+.++++|++|++++|......+..++.+++| +.|+
T Consensus 104 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~ 183 (570)
T 2z63_A 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183 (570)
T ss_dssp EEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEE
T ss_pred cccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcc
Confidence 77777777776654 46677777777777765433 2 2346667777777777765444445556666666 6677
Q ss_pred cCCCCCCccCCcccc-cCcccEEeccCccccc-ccC------------------------------CCCCcccc--ceEe
Q 044302 259 LKGCTSLTTLPGEIF-MKSLKTLVLSGCLKLR-KFP------------------------------HVGGSMEC--LQEL 304 (830)
Q Consensus 259 L~~c~~l~~lp~~~~-l~~L~~L~L~~~~~~~-~~~------------------------------~~~~~l~~--L~~L 304 (830)
+++ +.+..++...+ ..+|+.|++++|.... .++ ..+..+.+ ++.+
T Consensus 184 l~~-n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l 262 (570)
T 2z63_A 184 LSL-NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262 (570)
T ss_dssp CTT-CCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEE
T ss_pred cCC-CCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhh
Confidence 776 34444443333 4466666666542110 000 01111111 1222
Q ss_pred ecccc-ccc-ccccchhcccCCcEEeccCCCCCCCCccccccCccCcEEeecCCCCCCcCCcccCCCCCcEEEecCCccc
Q 044302 305 FLDET-DIK-EMPLSIEHLSGLILLTLKYCKNLSSLPVTISSLKCLRTLKLSGCSKLKKFPQIVGMEGLSELYLDGTSIT 382 (830)
Q Consensus 305 ~L~~~-~i~-~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~i~ 382 (830)
.+..+ .+. .++..+..+++|+.|++++|... .+|..+..+ +|++|++++|... .+|. ..+++|+.|++++|.+.
T Consensus 263 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~-~~l~~L~~L~l~~n~~~ 338 (570)
T 2z63_A 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT-LKLKSLKRLTFTSNKGG 338 (570)
T ss_dssp EEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB-CBCSSCCEEEEESCBSC
T ss_pred hhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc-ccccccCEEeCcCCccc
Confidence 22222 221 34455666777777777776544 466666666 7777777776654 4443 35667777777777665
Q ss_pred ccCcccCCCCCccEEecCCccCcccc--cccccCCCCCCEEeccCCCCCCccCcccCCCCCccEEecCCCcccCCC--cc
Q 044302 383 EVPSSIELLPGIELLNLNDCKNLVRL--PRSINGLKALKTLSLSGCCKLENVPDTLGQVESLEELDISGTATRRPP--CS 458 (830)
Q Consensus 383 ~l~~~~~~l~~L~~L~L~~~~~l~~l--~~~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~n~i~~l~--~~ 458 (830)
..... ..+++|+.|++++|...... +..+..+++|++|++++|......+. +..+++|++|++++|.+...+ ..
T Consensus 339 ~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~ 416 (570)
T 2z63_A 339 NAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSV 416 (570)
T ss_dssp CBCCC-CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCT
T ss_pred ccccc-ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhh
Confidence 43332 56677777777777655432 55666777777777777665443333 667777777777777766543 24
Q ss_pred cccCCCCcEEEcCCCCCCCCCCccccCCCCCCCCccCeecCCCCCCCCCccccccCCCCCCCEEeCCCCCCccc-CcccC
Q 044302 459 IFHMKNLKTLSFSGCNGPPSTASSLMLPSLSGLCSLTKLDLSDCGLGEGAILSDIGNLHSLKALYLSENNFVTL-PASIS 537 (830)
Q Consensus 459 l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~l-p~~l~ 537 (830)
+..+++|++|++++|..... ....+.++++|++|++++|.+.++.+|..+..+++|+.|++++|.++.+ |..+.
T Consensus 417 ~~~l~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 491 (570)
T 2z63_A 417 FLSLRNLIYLDISHTHTRVA-----FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491 (570)
T ss_dssp TTTCTTCCEEECTTSCCEEC-----CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred hhcCCCCCEEeCcCCccccc-----chhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhh
Confidence 56677777777777764321 1223566777777777777765445666777777777777777777755 55667
Q ss_pred CCCccCEeeccccccccccCC--C--CCCcceeeccCCc
Q 044302 538 GLFNLEYLKLEDCKRLQSLPQ--L--PPNVHNVRLNGCA 572 (830)
Q Consensus 538 ~L~~L~~L~L~~c~~l~~lp~--l--p~sL~~L~i~~C~ 572 (830)
.+++|++|+|++|+ ++.+|. + .++|+.|++++++
T Consensus 492 ~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 492 SLSSLQVLNMASNQ-LKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp TCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cccCCCEEeCCCCc-CCCCCHHHhhcccCCcEEEecCCc
Confidence 77777777777773 444432 1 1456666666644
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=9.9e-37 Score=363.97 Aligned_cols=423 Identities=14% Similarity=0.146 Sum_probs=268.8
Q ss_pred ccEEEEEeeccCCCccccccChHhhhCCCCCceEEE-cCcccCCC--cccccc----------Ccce------EE-----
Q 044302 111 EVVEGMIIDDHFFPENEMHLSAKAFSLMTNLRLLKI-GNVQLPKG--LEYLSN----------KLRL------LV----- 166 (830)
Q Consensus 111 ~~v~~i~l~~~~~~~~~~~~~~~~f~~l~~Lr~L~l-~~~~l~~~--~~~l~~----------~Lr~------L~----- 166 (830)
.+|..+.+... .. ...++ .+|..+++|+.|++ ++|.+.+. +..... .+|. +.
T Consensus 323 ~~V~~L~Ls~~-~L--~G~ip-~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~ 398 (876)
T 4ecn_A 323 GRVTGLSLAGF-GA--KGRVP-DAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRL 398 (876)
T ss_dssp SCEEEEECTTT-CC--EEEEC-GGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGG
T ss_pred CCEEEEECccC-CC--CCcCc-hHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcch
Confidence 57888888766 54 34555 68999999999999 88876432 110000 0000 00
Q ss_pred ---------EecCCCCCCCCC-CCCCCceEEEccC--CChhhcccCCCCCCcccEEEccCCCCCC---------------
Q 044302 167 ---------WHQYPLKSLPSN-LQLDKIVEFEMCY--SRIEELWKGIKPLNTLKVMKLSHSENLI--------------- 219 (830)
Q Consensus 167 ---------l~~~~l~~lp~~-~~l~~L~~L~L~~--n~i~~l~~~~~~l~~L~~L~L~~~~~~~--------------- 219 (830)
+..++. ..+.. .....++.+.+.. |.++.+|..++.+++|++|+|++|....
T Consensus 399 ~~s~l~~~~l~~~~~-~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~ 477 (876)
T 4ecn_A 399 NLSDLLQDAINRNPE-MKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYA 477 (876)
T ss_dssp GSCHHHHHHHHTCTT-SCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHH
T ss_pred hhhHHHHHHhhhCcc-ccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccc
Confidence 000000 00000 0122233333332 5566677777777777777777776544
Q ss_pred ---CCCCCC--CCCceeEEeeeCCcccccccccccCCCCccEEecCCCCCCc--cCCcccc-c-------CcccEEeccC
Q 044302 220 ---KTPNFI--EVPNLEVLDLEGCTRLREIHSSLVRHNKLILLNLKGCTSLT--TLPGEIF-M-------KSLKTLVLSG 284 (830)
Q Consensus 220 ---~~~~~~--~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~c~~l~--~lp~~~~-l-------~~L~~L~L~~ 284 (830)
.++.++ ++++|++|+|++|.....+|..++++++|+.|++++|..++ .+|..+. + ++|++|++++
T Consensus 478 ~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~ 557 (876)
T 4ecn_A 478 KQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY 557 (876)
T ss_dssp HHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCS
T ss_pred cccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeC
Confidence 233455 67777777777766666777777777777777777754344 3555443 3 3777777777
Q ss_pred cccccccCC--CCCccccceEeecccccccccccchhcccCCcEEeccCCCCCCCCccccccCcc-CcEEeecCCCCCCc
Q 044302 285 CLKLRKFPH--VGGSMECLQELFLDETDIKEMPLSIEHLSGLILLTLKYCKNLSSLPVTISSLKC-LRTLKLSGCSKLKK 361 (830)
Q Consensus 285 ~~~~~~~~~--~~~~l~~L~~L~L~~~~i~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~-L~~L~L~~~~~~~~ 361 (830)
|.+. .+|. .++.+++|+.|++++|.+..+| .+..+++|+.|++++|... .+|..+..+++ |+.|++++|... .
T Consensus 558 N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~ 633 (876)
T 4ecn_A 558 NNLE-EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-Y 633 (876)
T ss_dssp SCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-S
T ss_pred CcCC-ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-c
Confidence 7666 6666 6777777777777777777777 6777777777777777665 66666777777 777777777655 4
Q ss_pred CCcc-cCC--CCCcEEEecCCcccccCc----ccC--CCCCccEEecCCccCccccccc-ccCCCCCCEEeccCCCCCCc
Q 044302 362 FPQI-VGM--EGLSELYLDGTSITEVPS----SIE--LLPGIELLNLNDCKNLVRLPRS-INGLKALKTLSLSGCCKLEN 431 (830)
Q Consensus 362 ~~~~-~~l--~~L~~L~L~~~~i~~l~~----~~~--~l~~L~~L~L~~~~~l~~l~~~-~~~l~~L~~L~L~~~~~l~~ 431 (830)
+|.. ..+ ++|+.|+|++|.+...+. .+. .+++|+.|+|++|... .+|.. +..+++|+.|+|++|... .
T Consensus 634 lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ 711 (876)
T 4ecn_A 634 IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-S 711 (876)
T ss_dssp CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-C
T ss_pred CchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-c
Confidence 4542 222 337777777777753322 222 3347777777777666 34433 346777777777777655 4
Q ss_pred cCcccCC--------CCCccEEecCCCcccCCCcccc--cCCCCcEEEcCCCCCCCCCCccccCCCCCCCCccCeecCCC
Q 044302 432 VPDTLGQ--------VESLEELDISGTATRRPPCSIF--HMKNLKTLSFSGCNGPPSTASSLMLPSLSGLCSLTKLDLSD 501 (830)
Q Consensus 432 ~~~~l~~--------l~~L~~L~L~~n~i~~l~~~l~--~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~ 501 (830)
+|..+.. +++|++|+|++|.+..+|..++ .+++|+.|+|++|++.. ....+..+++|+.|+|++
T Consensus 712 ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~------lp~~l~~L~~L~~L~Ls~ 785 (876)
T 4ecn_A 712 IPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS------FPTQPLNSSQLKAFGIRH 785 (876)
T ss_dssp CCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS------CCCGGGGCTTCCEEECCC
T ss_pred cChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc------cchhhhcCCCCCEEECCC
Confidence 4443322 2377788888877777777776 77778888887776542 122366777777777765
Q ss_pred ------CCCCCCccccccCCCCCCCEEeCCCCCCcccCcccCCCCccCEeeccccccc
Q 044302 502 ------CGLGEGAILSDIGNLHSLKALYLSENNFVTLPASISGLFNLEYLKLEDCKRL 553 (830)
Q Consensus 502 ------~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~c~~l 553 (830)
|.+. +.+|..+..+++|+.|+|++|.+..+|..+. ++|+.|+|++|+..
T Consensus 786 N~~ls~N~l~-~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l~--~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 786 QRDAEGNRIL-RQWPTGITTCPSLIQLQIGSNDIRKVDEKLT--PQLYILDIADNPNI 840 (876)
T ss_dssp CBCTTCCBCC-CCCCTTGGGCSSCCEEECCSSCCCBCCSCCC--SSSCEEECCSCTTC
T ss_pred CCCccccccc-ccChHHHhcCCCCCEEECCCCCCCccCHhhc--CCCCEEECCCCCCC
Confidence 5565 5678888899999999999999998988765 68999999998743
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=9.6e-36 Score=361.80 Aligned_cols=447 Identities=18% Similarity=0.200 Sum_probs=226.0
Q ss_pred ccEEEEEeeccCCCccccccChHhhhCCCCCceEEEcCccc-----CCCccccccCcceEEEecCCCCCC-CCCC-CCCC
Q 044302 111 EVVEGMIIDDHFFPENEMHLSAKAFSLMTNLRLLKIGNVQL-----PKGLEYLSNKLRLLVWHQYPLKSL-PSNL-QLDK 183 (830)
Q Consensus 111 ~~v~~i~l~~~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~l-----~~~~~~l~~~Lr~L~l~~~~l~~l-p~~~-~l~~ 183 (830)
..++.+.+... .+ ..+.+..|.++++|++|++++|.. +..+..++ +|++|++++|.+..+ |..+ .+.+
T Consensus 24 ~~l~~LdLs~N-~i---~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~-~L~~L~Ls~N~l~~~~p~~~~~l~~ 98 (844)
T 3j0a_A 24 NTTERLLLSFN-YI---RTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLP-NLRILDLGSSKIYFLHPDAFQGLFH 98 (844)
T ss_dssp TTCCEEEEESC-CC---CEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCT-TCCEEECTTCCCCEECTTSSCSCSS
T ss_pred CCcCEEECCCC-cC---CccChhHCcccccCeEEeCCCCCCccccCHHHhcCCC-CCCEEECCCCcCcccCHhHccCCcc
Confidence 44555555544 22 234445566666666666666632 23344443 666666666666655 4444 5666
Q ss_pred ceEEEccCCChhh-cccC--CCCCCcccEEEccCCCCCCCCC--CCCCCCceeEEeeeCCcccccccccccCC--CCccE
Q 044302 184 IVEFEMCYSRIEE-LWKG--IKPLNTLKVMKLSHSENLIKTP--NFIEVPNLEVLDLEGCTRLREIHSSLVRH--NKLIL 256 (830)
Q Consensus 184 L~~L~L~~n~i~~-l~~~--~~~l~~L~~L~L~~~~~~~~~~--~~~~l~~L~~L~L~~~~~l~~~~~~l~~l--~~L~~ 256 (830)
|++|+|++|.+.. +|.. +..+++|++|+|++|......+ .|+++++|++|++++|......+..+..+ ++|+.
T Consensus 99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~ 178 (844)
T 3j0a_A 99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF 178 (844)
T ss_dssp CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCC
T ss_pred cCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccce
Confidence 6666666666654 3332 5666666666666665433322 35666666666666655444445555544 56666
Q ss_pred EecCCCCCCccCCcccc-cC------cccEEeccCcccccccCCCCC---------------------------------
Q 044302 257 LNLKGCTSLTTLPGEIF-MK------SLKTLVLSGCLKLRKFPHVGG--------------------------------- 296 (830)
Q Consensus 257 L~L~~c~~l~~lp~~~~-l~------~L~~L~L~~~~~~~~~~~~~~--------------------------------- 296 (830)
|++++|......|..+. +. .|+.|++++|......+..+.
T Consensus 179 L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~ 258 (844)
T 3j0a_A 179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN 258 (844)
T ss_dssp CEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGT
T ss_pred EECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChh
Confidence 66666544444443322 22 266666666643332222111
Q ss_pred ---c--cccceEeeccccccccc-ccchhcccCCcEEeccCCCCCCCCccccccCccCcEEeecCCCCCCcCCc-ccCCC
Q 044302 297 ---S--MECLQELFLDETDIKEM-PLSIEHLSGLILLTLKYCKNLSSLPVTISSLKCLRTLKLSGCSKLKKFPQ-IVGME 369 (830)
Q Consensus 297 ---~--l~~L~~L~L~~~~i~~l-~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~-~~~l~ 369 (830)
. .++|+.|++++|.+..+ +..+..+++|+.|++++|......+..+..+++|++|++++|......+. +.+++
T Consensus 259 ~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 338 (844)
T 3j0a_A 259 TFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLP 338 (844)
T ss_dssp TTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCT
T ss_pred hhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCC
Confidence 1 13455555555555533 23455555555555555555555555555555555555555554443332 44555
Q ss_pred CCcEEEecCCcccccCc-ccCCCCCccEEecCCccCcccccccccCCCCCCEEeccCCCCCCccCcc-------------
Q 044302 370 GLSELYLDGTSITEVPS-SIELLPGIELLNLNDCKNLVRLPRSINGLKALKTLSLSGCCKLENVPDT------------- 435 (830)
Q Consensus 370 ~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~------------- 435 (830)
+|+.|++++|.+..++. .+..+++|+.|+|++|.... +..+++|+.|++++|... .+|..
T Consensus 339 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-----i~~~~~L~~L~l~~N~l~-~l~~~~~~l~~L~ls~N~ 412 (844)
T 3j0a_A 339 KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-----IHFIPSIPDIFLSGNKLV-TLPKINLTANLIHLSENR 412 (844)
T ss_dssp TCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-----CSSCCSCSEEEEESCCCC-CCCCCCTTCCEEECCSCC
T ss_pred CCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-----ccCCCCcchhccCCCCcc-cccccccccceeecccCc
Confidence 55566665555554443 24555555555555554332 112444555555544433 22211
Q ss_pred ---------cCCCCCccEEecCCCcccCCCcc--cccCCCCcEEEcCCCCCCCCCCccccCCCCCCCCccCeecCCCCCC
Q 044302 436 ---------LGQVESLEELDISGTATRRPPCS--IFHMKNLKTLSFSGCNGPPSTASSLMLPSLSGLCSLTKLDLSDCGL 504 (830)
Q Consensus 436 ---------l~~l~~L~~L~L~~n~i~~l~~~--l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l 504 (830)
+..+++|+.|++++|.+..++.. +..+++|+.|++++|..............+.++++|+.|+|++|.+
T Consensus 413 l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l 492 (844)
T 3j0a_A 413 LENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYL 492 (844)
T ss_dssp CCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHH
T ss_pred cccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcc
Confidence 12334444444444444322211 2223444444444444322111111122355556666666666665
Q ss_pred CCCccccccCCCCCCCEEeCCCCCCcccCcccCCCCccCEeeccccccccccCCCCCCcceeeccC
Q 044302 505 GEGAILSDIGNLHSLKALYLSENNFVTLPASISGLFNLEYLKLEDCKRLQSLPQLPPNVHNVRLNG 570 (830)
Q Consensus 505 ~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~c~~l~~lp~lp~sL~~L~i~~ 570 (830)
+ +..+..+..+++|+.|+|++|+++.+|..... ++|+.|+|++|......|....+|+.|++.+
T Consensus 493 ~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~l~~~~~~~~~~L~~l~l~~ 556 (844)
T 3j0a_A 493 N-SLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-ANLEILDISRNQLLAPNPDVFVSLSVLDITH 556 (844)
T ss_dssp T-TCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC-SCCCEEEEEEECCCCCCSCCCSSCCEEEEEE
T ss_pred c-ccChhHccchhhhheeECCCCCCCccChhhhh-ccccEEECCCCcCCCCChhHhCCcCEEEecC
Confidence 5 34444556666666666666666655544333 5666666666654444444444566666554
No 12
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.3e-34 Score=344.77 Aligned_cols=435 Identities=20% Similarity=0.155 Sum_probs=281.5
Q ss_pred CCCceEEEcCcccCCC----ccccccCcceEEEecCCCCCCCCC-C-CCCCceEEEccCCChhhccc-CCCCCCcccEEE
Q 044302 139 TNLRLLKIGNVQLPKG----LEYLSNKLRLLVWHQYPLKSLPSN-L-QLDKIVEFEMCYSRIEELWK-GIKPLNTLKVMK 211 (830)
Q Consensus 139 ~~Lr~L~l~~~~l~~~----~~~l~~~Lr~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~n~i~~l~~-~~~~l~~L~~L~ 211 (830)
++++.|++++|.+.+. +..++ +|++|++++|.++.++.. + .+++|++|++++|.++.+|. .+..+++|++|+
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYS-QLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGT-TCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCC-cCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 7899999999987643 44554 899999999999988655 4 89999999999999999987 599999999999
Q ss_pred ccCCCCCCCCC-CCCCCCceeEEeeeCCcccccccccccCCCCccEEecCCCCCCccCCccc----ccCcccEEeccCcc
Q 044302 212 LSHSENLIKTP-NFIEVPNLEVLDLEGCTRLREIHSSLVRHNKLILLNLKGCTSLTTLPGEI----FMKSLKTLVLSGCL 286 (830)
Q Consensus 212 L~~~~~~~~~~-~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~c~~l~~lp~~~----~l~~L~~L~L~~~~ 286 (830)
|++|......+ .|.++++|++|++++|......+..++++++|++|++++| .++.++... .+++|++|++++|.
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN-KIQALKSEELDIFANSSLKKLELSSNQ 182 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSS-CCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCC-cccccCHHHhhccccccccEEECCCCc
Confidence 99998654443 5999999999999998777777788999999999999994 566665432 25889999999887
Q ss_pred cccccCCCCCccc---------------------------cceEeeccccccccc-ccchhcccC--CcEEeccCCCCCC
Q 044302 287 KLRKFPHVGGSME---------------------------CLQELFLDETDIKEM-PLSIEHLSG--LILLTLKYCKNLS 336 (830)
Q Consensus 287 ~~~~~~~~~~~l~---------------------------~L~~L~L~~~~i~~l-~~~l~~l~~--L~~L~L~~~~~~~ 336 (830)
+....+..++.+. +|+.|++++|.+..+ |..+..++. |+.|++++|....
T Consensus 183 l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~ 262 (680)
T 1ziw_A 183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV 262 (680)
T ss_dssp CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCE
T ss_pred ccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCc
Confidence 7665554443332 333444444444422 223343332 5555555555444
Q ss_pred CCccccccCccCcEEeecCCCCCCcCC----------------------------------cccCCCCCcEEEecCCccc
Q 044302 337 SLPVTISSLKCLRTLKLSGCSKLKKFP----------------------------------QIVGMEGLSELYLDGTSIT 382 (830)
Q Consensus 337 ~~~~~l~~l~~L~~L~L~~~~~~~~~~----------------------------------~~~~l~~L~~L~L~~~~i~ 382 (830)
..+..+..+++|++|++++|......+ .+..+++|+.|++++|.+.
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~ 342 (680)
T 1ziw_A 263 VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP 342 (680)
T ss_dssp ECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBC
T ss_pred cCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccC
Confidence 444445555555555555544333222 2334566777777777666
Q ss_pred ccCc-ccCCCCCccEEecCCccCc-cccc-ccccC--CCCCCEEeccCCCCCCccCcccCCCCCccEEecCCCccc-CCC
Q 044302 383 EVPS-SIELLPGIELLNLNDCKNL-VRLP-RSING--LKALKTLSLSGCCKLENVPDTLGQVESLEELDISGTATR-RPP 456 (830)
Q Consensus 383 ~l~~-~~~~l~~L~~L~L~~~~~l-~~l~-~~~~~--l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~n~i~-~l~ 456 (830)
.++. .+..+++|+.|++++|... ..++ ..+.. .++|+.|++++|......|..+..+++|+.|++++|.+. .+|
T Consensus 343 ~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 422 (680)
T 1ziw_A 343 GIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELT 422 (680)
T ss_dssp CCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECC
T ss_pred CCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccC
Confidence 5533 3556666666666555321 0110 00110 123333333333333334444555555555555555543 222
Q ss_pred -cccccCCCCcEEEcCCCCCCCCCC---------------------ccccCCCCCCCCccCeecCCCCCCCCCccccccC
Q 044302 457 -CSIFHMKNLKTLSFSGCNGPPSTA---------------------SSLMLPSLSGLCSLTKLDLSDCGLGEGAILSDIG 514 (830)
Q Consensus 457 -~~l~~l~~L~~L~L~~~~~~~~~~---------------------~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~ 514 (830)
..+..+++|++|++++|+...... .+.....+..+++|+.|++++|.++ ...+..+.
T Consensus 423 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~ 501 (680)
T 1ziw_A 423 GQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA-NINDDMLE 501 (680)
T ss_dssp SGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCC-CCCTTTTT
T ss_pred cccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCC-cCChhhhc
Confidence 234444444444444444211100 0112234888999999999999997 55566789
Q ss_pred CCCCCCEEeCCCCCCcccCc---------ccCCCCccCEeeccccccccccCC--C--CCCcceeeccCCccccccc
Q 044302 515 NLHSLKALYLSENNFVTLPA---------SISGLFNLEYLKLEDCKRLQSLPQ--L--PPNVHNVRLNGCASLVTLL 578 (830)
Q Consensus 515 ~l~~L~~L~L~~n~l~~lp~---------~l~~L~~L~~L~L~~c~~l~~lp~--l--p~sL~~L~i~~C~~L~~~~ 578 (830)
.+++|+.|++++|.++.++. .+..+++|++|+|++| .++.+|. + .++|+.|+++++ .|+.++
T Consensus 502 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~ 576 (680)
T 1ziw_A 502 GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPVEVFKDLFELKIIDLGLN-NLNTLP 576 (680)
T ss_dssp TCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCC
T ss_pred cccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCCCHHHcccccCcceeECCCC-CCCcCC
Confidence 99999999999999997642 2788999999999998 4667774 2 257899998765 455544
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.5e-35 Score=345.41 Aligned_cols=425 Identities=18% Similarity=0.172 Sum_probs=336.9
Q ss_pred CCCceEEEcCcccCC----CccccccCcceEEEecCCCCCCCCC-C-CCCCceEEEccCCChhhcc-cCCCCCCcccEEE
Q 044302 139 TNLRLLKIGNVQLPK----GLEYLSNKLRLLVWHQYPLKSLPSN-L-QLDKIVEFEMCYSRIEELW-KGIKPLNTLKVMK 211 (830)
Q Consensus 139 ~~Lr~L~l~~~~l~~----~~~~l~~~Lr~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~n~i~~l~-~~~~~l~~L~~L~ 211 (830)
++++.|++++|.+.. .+..++ +|++|++++|.++.++.. + .+.+|++|++++|.++.++ ..+..+++|++|+
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFP-ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCS-SCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred ccccEEEccCCccCccChhHhhCCC-CceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 579999999998752 455665 899999999999988754 4 8899999999999999886 5789999999999
Q ss_pred ccCCCCCCCCC-CCCCCCceeEEeeeCCcccc-cccccccCCCCccEEecCCCCCCccCCc-ccc-cCcc----cEEecc
Q 044302 212 LSHSENLIKTP-NFIEVPNLEVLDLEGCTRLR-EIHSSLVRHNKLILLNLKGCTSLTTLPG-EIF-MKSL----KTLVLS 283 (830)
Q Consensus 212 L~~~~~~~~~~-~~~~l~~L~~L~L~~~~~l~-~~~~~l~~l~~L~~L~L~~c~~l~~lp~-~~~-l~~L----~~L~L~ 283 (830)
+++|......+ .++++++|++|++++|.... .+|..++++++|++|++++| .++.++. .+. +++| +.|+++
T Consensus 107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~~~~~L~l~ 185 (570)
T 2z63_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLS 185 (570)
T ss_dssp CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS-CCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred ccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCC-ccceecHHHccchhccchhhhhcccC
Confidence 99997544333 48899999999999976554 57889999999999999994 5555543 343 7777 889999
Q ss_pred CcccccccCCCCCccccceEeeccccccc--ccccchhcccCC--------------------------------cEEec
Q 044302 284 GCLKLRKFPHVGGSMECLQELFLDETDIK--EMPLSIEHLSGL--------------------------------ILLTL 329 (830)
Q Consensus 284 ~~~~~~~~~~~~~~l~~L~~L~L~~~~i~--~l~~~l~~l~~L--------------------------------~~L~L 329 (830)
+|.+....+..+..+ +|+.|++++|... .++..+..++++ +.+++
T Consensus 186 ~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l 264 (570)
T 2z63_A 186 LNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264 (570)
T ss_dssp TCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEE
T ss_pred CCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhh
Confidence 998887777777665 7999998876432 233333333333 33444
Q ss_pred cCC-CCCCCCccccccCccCcEEeecCCCCCCcCCc-ccCCCCCcEEEecCCcccccCcccCCCCCccEEecCCccCccc
Q 044302 330 KYC-KNLSSLPVTISSLKCLRTLKLSGCSKLKKFPQ-IVGMEGLSELYLDGTSITEVPSSIELLPGIELLNLNDCKNLVR 407 (830)
Q Consensus 330 ~~~-~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~ 407 (830)
.++ ......+..+..+++|+.|++++|.... +|. +..+ +|+.|++++|.+..+|. ..+++|+.|++.+|.....
T Consensus 265 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~-~L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~n~~~~~ 340 (570)
T 2z63_A 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNF-GWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNA 340 (570)
T ss_dssp EETTEEESCSTTTTGGGTTCSEEEEESCEECS-CCBCCSCC-CCSEEEEESCBCSSCCB--CBCSSCCEEEEESCBSCCB
T ss_pred hcchhhhhhchhhhcCcCcccEEEecCccchh-hhhhhccC-CccEEeeccCcccccCc--ccccccCEEeCcCCccccc
Confidence 444 3344566778889999999999987664 554 5566 99999999999998887 5789999999999987766
Q ss_pred ccccccCCCCCCEEeccCCCCCCcc--CcccCCCCCccEEecCCCcccCCCcccccCCCCcEEEcCCCCCCCCCCccccC
Q 044302 408 LPRSINGLKALKTLSLSGCCKLENV--PDTLGQVESLEELDISGTATRRPPCSIFHMKNLKTLSFSGCNGPPSTASSLML 485 (830)
Q Consensus 408 l~~~~~~l~~L~~L~L~~~~~l~~~--~~~l~~l~~L~~L~L~~n~i~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l 485 (830)
.+. ..+++|++|++++|...... +..+..+++|++|++++|.+..++..+..+++|++|++++|...... ..
T Consensus 341 ~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~ 414 (570)
T 2z63_A 341 FSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMS----EF 414 (570)
T ss_dssp CCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCT----TS
T ss_pred ccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCcccccc----ch
Confidence 655 78999999999999876543 67788999999999999999988888999999999999999854321 11
Q ss_pred CCCCCCCccCeecCCCCCCCCCccccccCCCCCCCEEeCCCCCCc--ccCcccCCCCccCEeeccccccccccCC---CC
Q 044302 486 PSLSGLCSLTKLDLSDCGLGEGAILSDIGNLHSLKALYLSENNFV--TLPASISGLFNLEYLKLEDCKRLQSLPQ---LP 560 (830)
Q Consensus 486 ~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~--~lp~~l~~L~~L~~L~L~~c~~l~~lp~---lp 560 (830)
..+.++++|+.|++++|.+. ...+..+..+++|+.|++++|.+. .+|..+..+++|++|+|++|+.....|. -.
T Consensus 415 ~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 493 (570)
T 2z63_A 415 SVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493 (570)
T ss_dssp CTTTTCTTCCEEECTTSCCE-ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred hhhhcCCCCCEEeCcCCccc-ccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcc
Confidence 24788999999999999987 567788999999999999999997 6899999999999999999965444353 23
Q ss_pred CCcceeeccCCccccccc
Q 044302 561 PNVHNVRLNGCASLVTLL 578 (830)
Q Consensus 561 ~sL~~L~i~~C~~L~~~~ 578 (830)
++|+.|++++| .+..++
T Consensus 494 ~~L~~L~l~~n-~l~~~~ 510 (570)
T 2z63_A 494 SSLQVLNMASN-QLKSVP 510 (570)
T ss_dssp TTCCEEECCSS-CCSCCC
T ss_pred cCCCEEeCCCC-cCCCCC
Confidence 68999999988 354443
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=5.2e-36 Score=352.11 Aligned_cols=400 Identities=14% Similarity=0.178 Sum_probs=316.3
Q ss_pred CcceEEEecCCCC-CCCCCC-CCCCceEEEccCCChhhcccCCC------------------------------------
Q 044302 161 KLRLLVWHQYPLK-SLPSNL-QLDKIVEFEMCYSRIEELWKGIK------------------------------------ 202 (830)
Q Consensus 161 ~Lr~L~l~~~~l~-~lp~~~-~l~~L~~L~L~~n~i~~l~~~~~------------------------------------ 202 (830)
+++.|+++++.+. .+|..+ .+++|++|+|++|.+..-+..++
T Consensus 82 ~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~ 161 (636)
T 4eco_A 82 RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDL 161 (636)
T ss_dssp CEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHH
T ss_pred CEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHH
Confidence 7889999999885 678777 89999999999997621110000
Q ss_pred -----------------CCCcccEEEcc--CCCCCCCCC-CCCCCCceeEEeeeCCccccc-----------------cc
Q 044302 203 -----------------PLNTLKVMKLS--HSENLIKTP-NFIEVPNLEVLDLEGCTRLRE-----------------IH 245 (830)
Q Consensus 203 -----------------~l~~L~~L~L~--~~~~~~~~~-~~~~l~~L~~L~L~~~~~l~~-----------------~~ 245 (830)
....++.+.+. .|.... +| .++++++|++|++++|..... +|
T Consensus 162 ~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip 240 (636)
T 4eco_A 162 IKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT 240 (636)
T ss_dssp HHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred HHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCc
Confidence 11112222222 122222 44 588899999999999764443 89
Q ss_pred cccc--CCCCccEEecCCCCCCccCCcccc-cCcccEEeccCcc-ccc-ccCCCCCcc------ccceEeeccccccccc
Q 044302 246 SSLV--RHNKLILLNLKGCTSLTTLPGEIF-MKSLKTLVLSGCL-KLR-KFPHVGGSM------ECLQELFLDETDIKEM 314 (830)
Q Consensus 246 ~~l~--~l~~L~~L~L~~c~~l~~lp~~~~-l~~L~~L~L~~~~-~~~-~~~~~~~~l------~~L~~L~L~~~~i~~l 314 (830)
..++ ++++|++|++++|.....+|..+. +++|++|++++|. +.. .+|..++.+ ++|++|++++|.++.+
T Consensus 241 ~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~i 320 (636)
T 4eco_A 241 EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTF 320 (636)
T ss_dssp SCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSC
T ss_pred hhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCcc
Confidence 9988 999999999999888888888777 9999999999987 655 678777776 8999999999999999
Q ss_pred cc--chhcccCCcEEeccCCCCCCCCccccccCccCcEEeecCCCCCCcCC-cccCCCC-CcEEEecCCcccccCcccCC
Q 044302 315 PL--SIEHLSGLILLTLKYCKNLSSLPVTISSLKCLRTLKLSGCSKLKKFP-QIVGMEG-LSELYLDGTSITEVPSSIEL 390 (830)
Q Consensus 315 ~~--~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~-~~~~l~~-L~~L~L~~~~i~~l~~~~~~ 390 (830)
|. .++.+++|+.|++++|.....+| .+..+++|+.|++++|... .+| .+..+++ |+.|++++|.++.+|..+..
T Consensus 321 p~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~ 398 (636)
T 4eco_A 321 PVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDA 398 (636)
T ss_dssp CCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCT
T ss_pred CchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhh
Confidence 98 89999999999999998877788 8889999999999998776 444 4677888 99999999999999988776
Q ss_pred CC--CccEEecCCccCccccccccc-------CCCCCCEEeccCCCCCCccCcccCCCCCccEEecCCCcccCCCccccc
Q 044302 391 LP--GIELLNLNDCKNLVRLPRSIN-------GLKALKTLSLSGCCKLENVPDTLGQVESLEELDISGTATRRPPCSIFH 461 (830)
Q Consensus 391 l~--~L~~L~L~~~~~l~~l~~~~~-------~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~n~i~~l~~~l~~ 461 (830)
++ +|+.|++++|......|..+. .+++|++|++++|......+..+..+++|++|++++|.+..+|..+..
T Consensus 399 ~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~ 478 (636)
T 4eco_A 399 KSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLK 478 (636)
T ss_dssp TCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSE
T ss_pred cccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhc
Confidence 55 899999999998888888777 788999999999887744444456689999999999999988876554
Q ss_pred C--------CCCcEEEcCCCCCCCCCCccccCCC-CC--CCCccCeecCCCCCCCCCccccccCCCCCCCEEeCCC----
Q 044302 462 M--------KNLKTLSFSGCNGPPSTASSLMLPS-LS--GLCSLTKLDLSDCGLGEGAILSDIGNLHSLKALYLSE---- 526 (830)
Q Consensus 462 l--------~~L~~L~L~~~~~~~~~~~~~~l~~-l~--~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~---- 526 (830)
. ++|++|++++|++.. +|. +. .+++|++|++++|.++. +|..+..+++|+.|+|++
T Consensus 479 ~~~~~~~~l~~L~~L~Ls~N~l~~-------lp~~~~~~~l~~L~~L~Ls~N~l~~--ip~~~~~l~~L~~L~Ls~N~~l 549 (636)
T 4eco_A 479 DENENFKNTYLLTSIDLRFNKLTK-------LSDDFRATTLPYLVGIDLSYNSFSK--FPTQPLNSSTLKGFGIRNQRDA 549 (636)
T ss_dssp ETTEECTTGGGCCEEECCSSCCCB-------CCGGGSTTTCTTCCEEECCSSCCSS--CCCGGGGCSSCCEEECCSCBCT
T ss_pred cccccccccCCccEEECcCCcCCc-------cChhhhhccCCCcCEEECCCCCCCC--cChhhhcCCCCCEEECCCCccc
Confidence 2 289999999988652 232 44 88999999999999974 788888999999999954
Q ss_pred --CCCc-ccCcccCCCCccCEeeccccccccccCC-CCCCcceeeccCCcc
Q 044302 527 --NNFV-TLPASISGLFNLEYLKLEDCKRLQSLPQ-LPPNVHNVRLNGCAS 573 (830)
Q Consensus 527 --n~l~-~lp~~l~~L~~L~~L~L~~c~~l~~lp~-lp~sL~~L~i~~C~~ 573 (830)
|++. .+|..+..+++|++|+|++|+. ..+|. ++++|+.|++++|+-
T Consensus 550 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~~~L~~L~Ls~N~l 599 (636)
T 4eco_A 550 QGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKITPNISVLDIKDNPN 599 (636)
T ss_dssp TCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCTTCCEEECCSCTT
T ss_pred ccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHhCcCCEEECcCCCC
Confidence 5544 7888899999999999999865 88886 668899999998863
No 15
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=9.5e-35 Score=353.02 Aligned_cols=425 Identities=19% Similarity=0.175 Sum_probs=335.0
Q ss_pred CCCCCceEEEcCcccC----CCccccccCcceEEEecC-CCCCC-CCCC-CCCCceEEEccCCChhhc-ccCCCCCCccc
Q 044302 137 LMTNLRLLKIGNVQLP----KGLEYLSNKLRLLVWHQY-PLKSL-PSNL-QLDKIVEFEMCYSRIEEL-WKGIKPLNTLK 208 (830)
Q Consensus 137 ~l~~Lr~L~l~~~~l~----~~~~~l~~~Lr~L~l~~~-~l~~l-p~~~-~l~~L~~L~L~~n~i~~l-~~~~~~l~~L~ 208 (830)
-.++|+.|++++|.+. ..+..++ +|++|++++| .+..+ |..+ .+++|++|+|++|.|+.+ |..+..+++|+
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~-~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 100 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLE-QLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLF 100 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCC-SCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccc-cCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccC
Confidence 4588999999999875 3566665 8999999999 45666 5556 899999999999999987 78899999999
Q ss_pred EEEccCCCCCCCCC-C--CCCCCceeEEeeeCCccccccc-ccccCCCCccEEecCCCCCCccCCcccc-c--CcccEEe
Q 044302 209 VMKLSHSENLIKTP-N--FIEVPNLEVLDLEGCTRLREIH-SSLVRHNKLILLNLKGCTSLTTLPGEIF-M--KSLKTLV 281 (830)
Q Consensus 209 ~L~L~~~~~~~~~~-~--~~~l~~L~~L~L~~~~~l~~~~-~~l~~l~~L~~L~L~~c~~l~~lp~~~~-l--~~L~~L~ 281 (830)
+|+|++|......+ . +.++++|++|++++|......+ ..++++++|++|++++|......|..+. + ++|+.|+
T Consensus 101 ~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~ 180 (844)
T 3j0a_A 101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180 (844)
T ss_dssp CEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCE
T ss_pred EeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEE
Confidence 99999998655433 3 8999999999999986655433 5799999999999999554444555554 4 8999999
Q ss_pred ccCcccccccCCCCCcccc------ceEeeccccccc-ccccchh-----------------------------------
Q 044302 282 LSGCLKLRKFPHVGGSMEC------LQELFLDETDIK-EMPLSIE----------------------------------- 319 (830)
Q Consensus 282 L~~~~~~~~~~~~~~~l~~------L~~L~L~~~~i~-~l~~~l~----------------------------------- 319 (830)
+++|.+....+..++.+.+ |+.|++++|.+. .++..+.
T Consensus 181 L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f 260 (844)
T 3j0a_A 181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTF 260 (844)
T ss_dssp ECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTT
T ss_pred CCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhh
Confidence 9999988888777776665 999999999765 2222221
Q ss_pred -c--ccCCcEEeccCCCCCCCCccccccCccCcEEeecCCCCCCcCCc-ccCCCCCcEEEecCCccccc-CcccCCCCCc
Q 044302 320 -H--LSGLILLTLKYCKNLSSLPVTISSLKCLRTLKLSGCSKLKKFPQ-IVGMEGLSELYLDGTSITEV-PSSIELLPGI 394 (830)
Q Consensus 320 -~--l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~L~~~~i~~l-~~~~~~l~~L 394 (830)
. .++|+.|++++|......+..+..+++|+.|++++|......+. +.++++|+.|+|++|.+..+ |..+..+++|
T Consensus 261 ~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 340 (844)
T 3j0a_A 261 AGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKV 340 (844)
T ss_dssp TTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTC
T ss_pred hccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCC
Confidence 1 26789999999988877788889999999999999987776654 66789999999999999876 6678899999
Q ss_pred cEEecCCccCcccccccccCCCCCCEEeccCCCCCCccCcccCCCCCccEEecCCCcccCCCcc----------------
Q 044302 395 ELLNLNDCKNLVRLPRSINGLKALKTLSLSGCCKLENVPDTLGQVESLEELDISGTATRRPPCS---------------- 458 (830)
Q Consensus 395 ~~L~L~~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~n~i~~l~~~---------------- 458 (830)
+.|++++|......+..+..+++|++|++++|..... ..+++|+.|++++|.+..+|..
T Consensus 341 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~ 415 (844)
T 3j0a_A 341 AYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLEN 415 (844)
T ss_dssp CEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCS
T ss_pred CEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcccccccccccceeecccCcccc
Confidence 9999999987777777888899999999999876532 2256677777777666655432
Q ss_pred ------cccCCCCcEEEcCCCCCCCCCCccccCCCCCCCCccCeecCCCCCCCC----CccccccCCCCCCCEEeCCCCC
Q 044302 459 ------IFHMKNLKTLSFSGCNGPPSTASSLMLPSLSGLCSLTKLDLSDCGLGE----GAILSDIGNLHSLKALYLSENN 528 (830)
Q Consensus 459 ------l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~----~~~~~~l~~l~~L~~L~L~~n~ 528 (830)
+..+++|+.|++++|+...... ...+..+++|+.|++++|.+.. +..+..+.++++|+.|+|++|+
T Consensus 416 l~~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 491 (844)
T 3j0a_A 416 LDILYFLLRVPHLQILILNQNRFSSCSG----DQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNY 491 (844)
T ss_dssp STTHHHHTTCTTCCEEEEESCCCCCCCS----SSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHH
T ss_pred CchhhhhhcCCccceeeCCCCccccccc----ccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCc
Confidence 3367888888888887653211 1124567899999999998852 2334568889999999999999
Q ss_pred CcccCcc-cCCCCccCEeeccccccccccCC--CCCCcceeeccCCc
Q 044302 529 FVTLPAS-ISGLFNLEYLKLEDCKRLQSLPQ--LPPNVHNVRLNGCA 572 (830)
Q Consensus 529 l~~lp~~-l~~L~~L~~L~L~~c~~l~~lp~--lp~sL~~L~i~~C~ 572 (830)
++.+|.. +..+++|++|+|++| .++.+|. ++++|+.|+++++.
T Consensus 492 l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~~L~~L~Ls~N~ 537 (844)
T 3j0a_A 492 LNSLPPGVFSHLTALRGLSLNSN-RLTVLSHNDLPANLEILDISRNQ 537 (844)
T ss_dssp HTTCCTTSSSSCCSCSEEEEESC-CCSSCCCCCCCSCCCEEEEEEEC
T ss_pred ccccChhHccchhhhheeECCCC-CCCccChhhhhccccEEECCCCc
Confidence 9987754 689999999999998 5677764 67899999998864
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=4.6e-35 Score=339.75 Aligned_cols=418 Identities=19% Similarity=0.224 Sum_probs=296.7
Q ss_pred CCCceEEEcCcccC----CCccccccCcceEEEecCCCCCCCC-CC-CCCCceEEEccCCChhhcccC-CCCCCcccEEE
Q 044302 139 TNLRLLKIGNVQLP----KGLEYLSNKLRLLVWHQYPLKSLPS-NL-QLDKIVEFEMCYSRIEELWKG-IKPLNTLKVMK 211 (830)
Q Consensus 139 ~~Lr~L~l~~~~l~----~~~~~l~~~Lr~L~l~~~~l~~lp~-~~-~l~~L~~L~L~~n~i~~l~~~-~~~l~~L~~L~ 211 (830)
++|++|++++|.+. ..+..++ +|++|++++|.++.++. .+ .+.+|++|++++|.++.++.. ++.+++|++|+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACA-NLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccCccChhhhhcCC-cccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 67888888888764 3345554 78888888888887764 34 788888888888888877654 78888888888
Q ss_pred ccCCCCCC-C-CCCCCCCCceeEEeeeCCccccccc-ccccCCCCccEEecCCCCCCccCCcccc-cCcccEEeccCccc
Q 044302 212 LSHSENLI-K-TPNFIEVPNLEVLDLEGCTRLREIH-SSLVRHNKLILLNLKGCTSLTTLPGEIF-MKSLKTLVLSGCLK 287 (830)
Q Consensus 212 L~~~~~~~-~-~~~~~~l~~L~~L~L~~~~~l~~~~-~~l~~l~~L~~L~L~~c~~l~~lp~~~~-l~~L~~L~L~~~~~ 287 (830)
+++|.... . ++.+.++++|++|++++|..+..++ ..+..+++|++|++++|......|..+. +++|++|++++|..
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc
Confidence 88887543 2 3457888888888888876566665 4688888888888888555445666665 78888888887765
Q ss_pred ccccCCCCCccccceEeecccccccccc---c-chhcccCCcEEeccCCCCCCCC----ccccccCccCcEEeecCCCCC
Q 044302 288 LRKFPHVGGSMECLQELFLDETDIKEMP---L-SIEHLSGLILLTLKYCKNLSSL----PVTISSLKCLRTLKLSGCSKL 359 (830)
Q Consensus 288 ~~~~~~~~~~l~~L~~L~L~~~~i~~l~---~-~l~~l~~L~~L~L~~~~~~~~~----~~~l~~l~~L~~L~L~~~~~~ 359 (830)
.......++.+++|+.|++++|.+..++ . ....+++|+.|++++|...... +..+..+++|+.|++++|...
T Consensus 185 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~ 264 (549)
T 2z81_A 185 AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLN 264 (549)
T ss_dssp TTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEE
T ss_pred cccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccc
Confidence 4332223345778888888888877642 1 1233556666666655433221 122334455555555554322
Q ss_pred Cc--------------------------CCc----------ccCCCCCcEEEecCCcccccCccc-CCCCCccEEecCCc
Q 044302 360 KK--------------------------FPQ----------IVGMEGLSELYLDGTSITEVPSSI-ELLPGIELLNLNDC 402 (830)
Q Consensus 360 ~~--------------------------~~~----------~~~l~~L~~L~L~~~~i~~l~~~~-~~l~~L~~L~L~~~ 402 (830)
.. ++. ....++|+.|++++|.+..+|..+ ..+++|+.|++++|
T Consensus 265 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N 344 (549)
T 2z81_A 265 GLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSEN 344 (549)
T ss_dssp CCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSS
T ss_pred ccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCC
Confidence 10 000 012457888888888888888776 57899999999999
Q ss_pred cCccccc---ccccCCCCCCEEeccCCCCCCccC--cccCCCCCccEEecCCCcccCCCcccccCCCCcEEEcCCCCCCC
Q 044302 403 KNLVRLP---RSINGLKALKTLSLSGCCKLENVP--DTLGQVESLEELDISGTATRRPPCSIFHMKNLKTLSFSGCNGPP 477 (830)
Q Consensus 403 ~~l~~l~---~~~~~l~~L~~L~L~~~~~l~~~~--~~l~~l~~L~~L~L~~n~i~~l~~~l~~l~~L~~L~L~~~~~~~ 477 (830)
......| ..++.+++|++|++++|......+ ..+..+++|++|++++|.+..+|..+..+++|++|++++|+...
T Consensus 345 ~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~ 424 (549)
T 2z81_A 345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRV 424 (549)
T ss_dssp CCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSC
T ss_pred ccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCccc
Confidence 8877664 336788999999999987765432 45788899999999999999999888889999999999988543
Q ss_pred CCCccccCCCCCCCCccCeecCCCCCCCCCccccccCCCCCCCEEeCCCCCCcccCcccCCCCccCEeeccccccccccC
Q 044302 478 STASSLMLPSLSGLCSLTKLDLSDCGLGEGAILSDIGNLHSLKALYLSENNFVTLPASISGLFNLEYLKLEDCKRLQSLP 557 (830)
Q Consensus 478 ~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~c~~l~~lp 557 (830)
. +. ...++|+.|++++|+++. + ...+++|+.|++++|+++.+|. ...+++|++|+|++|+ ++.+|
T Consensus 425 l-------~~-~~~~~L~~L~Ls~N~l~~--~---~~~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N~-l~~~~ 489 (549)
T 2z81_A 425 V-------KT-CIPQTLEVLDVSNNNLDS--F---SLFLPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRNQ-LKSVP 489 (549)
T ss_dssp C-------CT-TSCTTCSEEECCSSCCSC--C---CCCCTTCCEEECCSSCCSSCCC-GGGCTTCCEEECCSSC-CCCCC
T ss_pred c-------cc-hhcCCceEEECCCCChhh--h---cccCChhcEEECCCCccCcCCC-cccCccCCEEecCCCc-cCCcC
Confidence 1 11 112589999999998863 2 2578899999999999999886 4678999999999985 44443
Q ss_pred C----CCCCcceeeccCCc
Q 044302 558 Q----LPPNVHNVRLNGCA 572 (830)
Q Consensus 558 ~----lp~sL~~L~i~~C~ 572 (830)
. -.++|+.|++++++
T Consensus 490 ~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 490 DGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp TTGGGGCTTCCEEECCSSC
T ss_pred HHHHhcCcccCEEEecCCC
Confidence 2 12567778877766
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=8.3e-35 Score=337.58 Aligned_cols=420 Identities=17% Similarity=0.155 Sum_probs=333.6
Q ss_pred ccEEEEEeeccCCCccccccChHhhhCCCCCceEEEcCcccC----CCccccccCcceEEEecCCCCCCCCC-C-CCCCc
Q 044302 111 EVVEGMIIDDHFFPENEMHLSAKAFSLMTNLRLLKIGNVQLP----KGLEYLSNKLRLLVWHQYPLKSLPSN-L-QLDKI 184 (830)
Q Consensus 111 ~~v~~i~l~~~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~l~----~~~~~l~~~Lr~L~l~~~~l~~lp~~-~-~l~~L 184 (830)
..++.+.+... .+ ..+.+.+|.++++|++|++++|.+. ..+..++ +|++|++++|.++.+|.. + .+++|
T Consensus 26 ~~L~~L~Ls~n-~l---~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L 100 (549)
T 2z81_A 26 AAMKSLDLSFN-KI---TYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLG-SLEHLDLSDNHLSSLSSSWFGPLSSL 100 (549)
T ss_dssp TTCCEEECCSS-CC---CEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECTTSCCCSCCHHHHTTCTTC
T ss_pred CCccEEECcCC-cc---CccChhhhhcCCcccEEECCCCCcCccChhhccccc-cCCEEECCCCccCccCHHHhccCCCC
Confidence 46788877766 33 3455678999999999999999875 3455665 899999999999999876 4 89999
Q ss_pred eEEEccCCChhhc--ccCCCCCCcccEEEccCCCCCCCCC--CCCCCCceeEEeeeCCcccccccccccCCCCccEEecC
Q 044302 185 VEFEMCYSRIEEL--WKGIKPLNTLKVMKLSHSENLIKTP--NFIEVPNLEVLDLEGCTRLREIHSSLVRHNKLILLNLK 260 (830)
Q Consensus 185 ~~L~L~~n~i~~l--~~~~~~l~~L~~L~L~~~~~~~~~~--~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~ 260 (830)
++|++++|.++.+ |..+..+++|++|++++|.....++ .+.++++|++|++++|......|..++.+++|++|+++
T Consensus 101 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 180 (549)
T 2z81_A 101 KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH 180 (549)
T ss_dssp CEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred cEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecc
Confidence 9999999999964 6789999999999999997555443 69999999999999988777889999999999999999
Q ss_pred CCCCCccCCcccc--cCcccEEeccCccccccc---CCCCCccccceEeeccccccc-----ccccchhcccCCcEEecc
Q 044302 261 GCTSLTTLPGEIF--MKSLKTLVLSGCLKLRKF---PHVGGSMECLQELFLDETDIK-----EMPLSIEHLSGLILLTLK 330 (830)
Q Consensus 261 ~c~~l~~lp~~~~--l~~L~~L~L~~~~~~~~~---~~~~~~l~~L~~L~L~~~~i~-----~l~~~l~~l~~L~~L~L~ 330 (830)
+ +....+|.... +++|++|++++|.+.... ......+++|+.|+++++.+. .++..+..+++|+.++++
T Consensus 181 ~-n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~ 259 (549)
T 2z81_A 181 L-SESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFD 259 (549)
T ss_dssp C-SBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEE
T ss_pred c-CcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccc
Confidence 8 45566666553 899999999998876532 123345677888888887765 233344556667777766
Q ss_pred CCCCCCC-----------------------------------CccccccCccCcEEeecCCCCCCcCCc-c-cCCCCCcE
Q 044302 331 YCKNLSS-----------------------------------LPVTISSLKCLRTLKLSGCSKLKKFPQ-I-VGMEGLSE 373 (830)
Q Consensus 331 ~~~~~~~-----------------------------------~~~~l~~l~~L~~L~L~~~~~~~~~~~-~-~~l~~L~~ 373 (830)
+|..... ++..+...++|+.|++++|.. ..+|. + ..+++|+.
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l-~~ip~~~~~~l~~L~~ 338 (549)
T 2z81_A 260 DCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV-FLVPCSFSQHLKSLEF 338 (549)
T ss_dssp SCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCC-CCCCHHHHHHCTTCCE
T ss_pred cccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCcc-ccCCHHHHhcCccccE
Confidence 6543221 111123346788888888775 45555 3 36999999
Q ss_pred EEecCCcccc-c---CcccCCCCCccEEecCCccCccccc--ccccCCCCCCEEeccCCCCCCccCcccCCCCCccEEec
Q 044302 374 LYLDGTSITE-V---PSSIELLPGIELLNLNDCKNLVRLP--RSINGLKALKTLSLSGCCKLENVPDTLGQVESLEELDI 447 (830)
Q Consensus 374 L~L~~~~i~~-l---~~~~~~l~~L~~L~L~~~~~l~~l~--~~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L 447 (830)
|++++|.+.. + +..++.+++|+.|++++|......+ ..+..+++|++|++++|... .+|..+..+++|++|++
T Consensus 339 L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~L 417 (549)
T 2z81_A 339 LDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNL 417 (549)
T ss_dssp EECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEEC
T ss_pred EEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEEC
Confidence 9999999985 3 2347889999999999998765432 56889999999999999665 78888999999999999
Q ss_pred CCCcccCCCcccccCCCCcEEEcCCCCCCCCCCccccCCCCCCCCccCeecCCCCCCCCCccccccCCCCCCCEEeCCCC
Q 044302 448 SGTATRRPPCSIFHMKNLKTLSFSGCNGPPSTASSLMLPSLSGLCSLTKLDLSDCGLGEGAILSDIGNLHSLKALYLSEN 527 (830)
Q Consensus 448 ~~n~i~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n 527 (830)
++|.+..+|..+ .++|++|++++|+.... ...+++|++|++++|+++ .+|. ...+++|+.|+|++|
T Consensus 418 s~N~l~~l~~~~--~~~L~~L~Ls~N~l~~~---------~~~l~~L~~L~Ls~N~l~--~ip~-~~~l~~L~~L~Ls~N 483 (549)
T 2z81_A 418 SSTGIRVVKTCI--PQTLEVLDVSNNNLDSF---------SLFLPRLQELYISRNKLK--TLPD-ASLFPVLLVMKISRN 483 (549)
T ss_dssp TTSCCSCCCTTS--CTTCSEEECCSSCCSCC---------CCCCTTCCEEECCSSCCS--SCCC-GGGCTTCCEEECCSS
T ss_pred CCCCcccccchh--cCCceEEECCCCChhhh---------cccCChhcEEECCCCccC--cCCC-cccCccCCEEecCCC
Confidence 999999887655 37999999999986532 257899999999999997 3665 567999999999999
Q ss_pred CCcccCc-ccCCCCccCEeecccccc
Q 044302 528 NFVTLPA-SISGLFNLEYLKLEDCKR 552 (830)
Q Consensus 528 ~l~~lp~-~l~~L~~L~~L~L~~c~~ 552 (830)
+++.+|. .+..+++|+.|++++|+.
T Consensus 484 ~l~~~~~~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 484 QLKSVPDGIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp CCCCCCTTGGGGCTTCCEEECCSSCB
T ss_pred ccCCcCHHHHhcCcccCEEEecCCCc
Confidence 9998775 489999999999999974
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.1e-34 Score=346.30 Aligned_cols=338 Identities=15% Similarity=0.161 Sum_probs=271.1
Q ss_pred CCCCCCCceeEEeeeCCcccc-----------------ccccccc--CCCCccEEecCCCCCCccCCcccc-cCcccEEe
Q 044302 222 PNFIEVPNLEVLDLEGCTRLR-----------------EIHSSLV--RHNKLILLNLKGCTSLTTLPGEIF-MKSLKTLV 281 (830)
Q Consensus 222 ~~~~~l~~L~~L~L~~~~~l~-----------------~~~~~l~--~l~~L~~L~L~~c~~l~~lp~~~~-l~~L~~L~ 281 (830)
+.+.++++|++|+|++|.... .+|..++ ++++|++|+|++|.....+|..+. +++|+.|+
T Consensus 442 ~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~ 521 (876)
T 4ecn_A 442 KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLN 521 (876)
T ss_dssp GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEE
T ss_pred HHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEE
Confidence 358888999999999876544 2888887 899999999999888888887777 89999999
Q ss_pred ccCcc-ccc-ccCCCCCccc-------cceEeeccccccccccc--chhcccCCcEEeccCCCCCCCCccccccCccCcE
Q 044302 282 LSGCL-KLR-KFPHVGGSME-------CLQELFLDETDIKEMPL--SIEHLSGLILLTLKYCKNLSSLPVTISSLKCLRT 350 (830)
Q Consensus 282 L~~~~-~~~-~~~~~~~~l~-------~L~~L~L~~~~i~~l~~--~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~ 350 (830)
+++|. +.. .+|..++.++ +|+.|++++|.+..+|. .+..+++|+.|++++|... .+| .+..+++|+.
T Consensus 522 Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~ 599 (876)
T 4ecn_A 522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTD 599 (876)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESE
T ss_pred CcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceE
Confidence 99987 555 5776555555 89999999999999988 8899999999999998877 777 8888999999
Q ss_pred EeecCCCCCCcCC-cccCCCC-CcEEEecCCcccccCcccCCCCC--ccEEecCCccCccccccc---cc--CCCCCCEE
Q 044302 351 LKLSGCSKLKKFP-QIVGMEG-LSELYLDGTSITEVPSSIELLPG--IELLNLNDCKNLVRLPRS---IN--GLKALKTL 421 (830)
Q Consensus 351 L~L~~~~~~~~~~-~~~~l~~-L~~L~L~~~~i~~l~~~~~~l~~--L~~L~L~~~~~l~~l~~~---~~--~l~~L~~L 421 (830)
|++++|... .+| .+..+++ |+.|+|++|.++.+|..+..++. |+.|+|++|.....+|.. +. .+++|+.|
T Consensus 600 L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L 678 (876)
T 4ecn_A 600 LKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTV 678 (876)
T ss_dssp EECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEE
T ss_pred EECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEE
Confidence 999998877 555 4667888 99999999999988887776654 999999998887655532 22 34589999
Q ss_pred eccCCCCCCccCcc-cCCCCCccEEecCCCcccCCCcccccC--------CCCcEEEcCCCCCCCCCCccccCCC-CC--
Q 044302 422 SLSGCCKLENVPDT-LGQVESLEELDISGTATRRPPCSIFHM--------KNLKTLSFSGCNGPPSTASSLMLPS-LS-- 489 (830)
Q Consensus 422 ~L~~~~~l~~~~~~-l~~l~~L~~L~L~~n~i~~l~~~l~~l--------~~L~~L~L~~~~~~~~~~~~~~l~~-l~-- 489 (830)
++++|... .+|.. +..+++|+.|+|++|.+..+|..++.. ++|+.|+|++|++.. +|. +.
T Consensus 679 ~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~-------lp~~l~~~ 750 (876)
T 4ecn_A 679 TLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-------LSDDFRAT 750 (876)
T ss_dssp ECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCC-------CCGGGSTT
T ss_pred EccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCcc-------chHHhhhc
Confidence 99998877 45544 457889999999999988888766553 389999999987652 222 44
Q ss_pred CCCccCeecCCCCCCCCCccccccCCCCCCCEEeCCC------CCCc-ccCcccCCCCccCEeeccccccccccCC-CCC
Q 044302 490 GLCSLTKLDLSDCGLGEGAILSDIGNLHSLKALYLSE------NNFV-TLPASISGLFNLEYLKLEDCKRLQSLPQ-LPP 561 (830)
Q Consensus 490 ~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~------n~l~-~lp~~l~~L~~L~~L~L~~c~~l~~lp~-lp~ 561 (830)
.+++|+.|+|++|.+.. +|..+..+++|+.|+|++ |++. .+|..+..+++|++|+|++|+. ..+|. +++
T Consensus 751 ~l~~L~~L~Ls~N~L~~--lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~~ 827 (876)
T 4ecn_A 751 TLPYLSNMDVSYNCFSS--FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLTP 827 (876)
T ss_dssp TCTTCCEEECCSSCCSS--CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCS
T ss_pred cCCCcCEEEeCCCCCCc--cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhcC
Confidence 78899999999999874 788888999999999976 5544 6788888899999999999865 88886 667
Q ss_pred CcceeeccCCcc
Q 044302 562 NVHNVRLNGCAS 573 (830)
Q Consensus 562 sL~~L~i~~C~~ 573 (830)
+|+.|++++|+-
T Consensus 828 ~L~~LdLs~N~l 839 (876)
T 4ecn_A 828 QLYILDIADNPN 839 (876)
T ss_dssp SSCEEECCSCTT
T ss_pred CCCEEECCCCCC
Confidence 899999998873
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.1e-34 Score=334.07 Aligned_cols=417 Identities=17% Similarity=0.137 Sum_probs=278.4
Q ss_pred CCCceEEEcCcccCCC----ccccccCcceEEEecCCCCCC-CCCC-CCCCceEEEccCCChhhcccCCCCCCcccEEEc
Q 044302 139 TNLRLLKIGNVQLPKG----LEYLSNKLRLLVWHQYPLKSL-PSNL-QLDKIVEFEMCYSRIEELWKGIKPLNTLKVMKL 212 (830)
Q Consensus 139 ~~Lr~L~l~~~~l~~~----~~~l~~~Lr~L~l~~~~l~~l-p~~~-~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L 212 (830)
++|+.|++++|.+.+. +..++ +|++|++++|.++.+ |..+ .+++|++|+|++|.|+.+|.. .+++|++|+|
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLS-KLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCT-TCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccc-cccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEec
Confidence 5667777776665432 33343 677777777766666 3344 666777777777777666655 5667777777
Q ss_pred cCCCCCC-CC-CCCCCCCceeEEeeeCCcccccccccccCCCCc--cEEecCCCCC--CccCCcccc-cC-cccEEeccC
Q 044302 213 SHSENLI-KT-PNFIEVPNLEVLDLEGCTRLREIHSSLVRHNKL--ILLNLKGCTS--LTTLPGEIF-MK-SLKTLVLSG 284 (830)
Q Consensus 213 ~~~~~~~-~~-~~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L--~~L~L~~c~~--l~~lp~~~~-l~-~L~~L~L~~ 284 (830)
++|.... .. ..++++++|++|++++|.... ..+..+++| +.|++++|.. ....|..+. +. ....+++++
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 174 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT 174 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCS
T ss_pred cCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEecc
Confidence 7666443 22 346666777777776654332 234445555 6777666544 333443333 22 223445555
Q ss_pred cccccccC-CCCCccccceEeeccccc-------ccccccchhcccCCcEEeccCCCCCCCCcccc---ccCccCcEEee
Q 044302 285 CLKLRKFP-HVGGSMECLQELFLDETD-------IKEMPLSIEHLSGLILLTLKYCKNLSSLPVTI---SSLKCLRTLKL 353 (830)
Q Consensus 285 ~~~~~~~~-~~~~~l~~L~~L~L~~~~-------i~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l---~~l~~L~~L~L 353 (830)
|......+ ..+..+++|+.|++++|. +......+..+++|+.|++++|......+..+ ...++|++|++
T Consensus 175 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l 254 (520)
T 2z7x_B 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSI 254 (520)
T ss_dssp SSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEE
T ss_pred CcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEe
Confidence 55444333 345668888888888876 44333367788888888888765443222111 12458889999
Q ss_pred cCCCCCCcCCc-c-----cCCCCCcEEEecCCcccccC-cccCCC---CCccEEecCCccCcccccccccCCCCCCEEec
Q 044302 354 SGCSKLKKFPQ-I-----VGMEGLSELYLDGTSITEVP-SSIELL---PGIELLNLNDCKNLVRLPRSINGLKALKTLSL 423 (830)
Q Consensus 354 ~~~~~~~~~~~-~-----~~l~~L~~L~L~~~~i~~l~-~~~~~l---~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~L 423 (830)
++|...+.+|. + ..+++|+.+++++|.+ .+| ..+..+ ++|+.|++++|...... ....+++|++|++
T Consensus 255 ~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~L 331 (520)
T 2z7x_B 255 SNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDF 331 (520)
T ss_dssp EEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEEC
T ss_pred ecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEe
Confidence 88877766665 3 6688888888888888 676 334333 57889999888754432 1257888999999
Q ss_pred cCCCCCCccCcccCCCCCccEEecCCCcccC---CCcccccCCCCcEEEcCCCCCCCCCCccccCCCCCCCCccCeecCC
Q 044302 424 SGCCKLENVPDTLGQVESLEELDISGTATRR---PPCSIFHMKNLKTLSFSGCNGPPSTASSLMLPSLSGLCSLTKLDLS 500 (830)
Q Consensus 424 ~~~~~l~~~~~~l~~l~~L~~L~L~~n~i~~---l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls 500 (830)
++|......|..++.+++|++|++++|.+.. +|..+..+++|++|++++|+.... .....+..+++|++|+++
T Consensus 332 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~----l~~~~~~~l~~L~~L~Ls 407 (520)
T 2z7x_B 332 SNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYD----EKKGDCSWTKSLLSLNMS 407 (520)
T ss_dssp CSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCC----GGGCSCCCCTTCCEEECC
T ss_pred ECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcc----cccchhccCccCCEEECc
Confidence 9988888888888888999999999998885 345677889999999998886531 111236778889999999
Q ss_pred CCCCCCCccccccCCCCCCCEEeCCCCCCcccCcccCCCCccCEeeccccccccccCC--C--CCCcceeeccCCc
Q 044302 501 DCGLGEGAILSDIGNLHSLKALYLSENNFVTLPASISGLFNLEYLKLEDCKRLQSLPQ--L--PPNVHNVRLNGCA 572 (830)
Q Consensus 501 ~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~c~~l~~lp~--l--p~sL~~L~i~~C~ 572 (830)
+|.++ +..+..+. ++|+.|++++|+++.+|..+..+++|++|+|++|+ ++.+|. + .++|+.|++++++
T Consensus 408 ~N~l~-~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 408 SNILT-DTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQ-LKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp SSCCC-GGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCC-cchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCc-CCccCHHHhccCCcccEEECcCCC
Confidence 99886 44554443 78999999999999998888889999999999884 566765 2 2467777776654
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=7.2e-33 Score=318.92 Aligned_cols=397 Identities=17% Similarity=0.190 Sum_probs=293.1
Q ss_pred ceEEEecCCCCCCCCCCCCCCceEEEccCCChhhcc-cCCCCCCcccEEEccCCCCCCCCC-CCCCCCceeEEeeeCCcc
Q 044302 163 RLLVWHQYPLKSLPSNLQLDKIVEFEMCYSRIEELW-KGIKPLNTLKVMKLSHSENLIKTP-NFIEVPNLEVLDLEGCTR 240 (830)
Q Consensus 163 r~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~-~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~L~~~~~ 240 (830)
++|+++++.++.+|..+. ++|++|++++|.++.++ ..+..+++|++|+|++|......| .|.++++|++|++++| .
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~ 80 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-K 80 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-C
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-c
Confidence 579999999999998776 89999999999999886 578999999999999998655534 6999999999999996 4
Q ss_pred cccccccccCCCCccEEecCCCCCCcc--CCcccc-cCcccEEeccCcccccccCCCCCccccc--eEeecccccc--c-
Q 044302 241 LREIHSSLVRHNKLILLNLKGCTSLTT--LPGEIF-MKSLKTLVLSGCLKLRKFPHVGGSMECL--QELFLDETDI--K- 312 (830)
Q Consensus 241 l~~~~~~l~~l~~L~~L~L~~c~~l~~--lp~~~~-l~~L~~L~L~~~~~~~~~~~~~~~l~~L--~~L~L~~~~i--~- 312 (830)
+..+|.. .+++|++|++++| .+.. +|..+. +++|++|++++|.+.. ..++.+++| +.|++++|.+ .
T Consensus 81 l~~lp~~--~l~~L~~L~L~~N-~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~ 154 (520)
T 2z7x_B 81 LVKISCH--PTVNLKHLDLSFN-AFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEK 154 (520)
T ss_dssp CCEEECC--CCCCCSEEECCSS-CCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSS
T ss_pred eeecCcc--ccCCccEEeccCC-ccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccc
Confidence 5578877 8999999999995 4554 566666 9999999999988765 346677778 9999999988 3
Q ss_pred ccccchhccc-CCcEEeccCCCCCCCCcc-ccccCccCcEEeecCCC-------CCCcCCcccC----------------
Q 044302 313 EMPLSIEHLS-GLILLTLKYCKNLSSLPV-TISSLKCLRTLKLSGCS-------KLKKFPQIVG---------------- 367 (830)
Q Consensus 313 ~l~~~l~~l~-~L~~L~L~~~~~~~~~~~-~l~~l~~L~~L~L~~~~-------~~~~~~~~~~---------------- 367 (830)
..|..+..+. +...+++.+|.....++. .+..+++|+.|++++|. ..+.++.+..
T Consensus 155 ~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 234 (520)
T 2z7x_B 155 EDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTW 234 (520)
T ss_dssp CCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEH
T ss_pred cccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCH
Confidence 4555555433 122334444444333322 34445555555555443 1111111222
Q ss_pred -----------CCCCcEEEecCCccc-ccCccc-----CCCCCccEEecCCccCccccc-ccccCC---CCCCEEeccCC
Q 044302 368 -----------MEGLSELYLDGTSIT-EVPSSI-----ELLPGIELLNLNDCKNLVRLP-RSINGL---KALKTLSLSGC 426 (830)
Q Consensus 368 -----------l~~L~~L~L~~~~i~-~l~~~~-----~~l~~L~~L~L~~~~~l~~l~-~~~~~l---~~L~~L~L~~~ 426 (830)
.++|+.|++++|.+. .+|..+ ..+++|+.+++++|.. .+| ..+..+ ++|+.|++++|
T Consensus 235 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n 312 (520)
T 2z7x_B 235 NSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGT 312 (520)
T ss_dssp HHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESS
T ss_pred HHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCC
Confidence 346777777777777 677776 7778888888887776 444 334333 67888888888
Q ss_pred CCCCccCcccCCCCCccEEecCCCcccC-CCcccccCCCCcEEEcCCCCCCCCCCccccC-CCCCCCCccCeecCCCCCC
Q 044302 427 CKLENVPDTLGQVESLEELDISGTATRR-PPCSIFHMKNLKTLSFSGCNGPPSTASSLML-PSLSGLCSLTKLDLSDCGL 504 (830)
Q Consensus 427 ~~l~~~~~~l~~l~~L~~L~L~~n~i~~-l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l-~~l~~l~~L~~L~Ls~~~l 504 (830)
...... ....+++|++|++++|.+.. +|..+..+++|++|++++|++.... .+ ..+..+++|++|++++|.+
T Consensus 313 ~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~----~~~~~~~~l~~L~~L~Ls~N~l 386 (520)
T 2z7x_B 313 RMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELS----KIAEMTTQMKSLQQLDISQNSV 386 (520)
T ss_dssp CCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHH----HHHHHHTTCTTCCEEECCSSCC
T ss_pred cccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccc----cchHHHhhCCCCCEEECCCCcC
Confidence 754432 12678999999999999986 7888999999999999999865210 11 2277899999999999999
Q ss_pred CCCccccccCCCCCCCEEeCCCCCCc-ccCcccCCCCccCEeeccccccccccCC---CCCCcceeeccCCcccccccc
Q 044302 505 GEGAILSDIGNLHSLKALYLSENNFV-TLPASISGLFNLEYLKLEDCKRLQSLPQ---LPPNVHNVRLNGCASLVTLLG 579 (830)
Q Consensus 505 ~~~~~~~~l~~l~~L~~L~L~~n~l~-~lp~~l~~L~~L~~L~L~~c~~l~~lp~---lp~sL~~L~i~~C~~L~~~~~ 579 (830)
........+..+++|+.|++++|.++ .+|..+. ++|++|++++| .++.+|. -.++|+.|++++| .++.++.
T Consensus 387 ~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~ 461 (520)
T 2z7x_B 387 SYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASN-QLKSVPD 461 (520)
T ss_dssp BCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCCT
T ss_pred CcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCC-cccccchhhhcCCCCCEEECCCC-cCCccCH
Confidence 73233345888999999999999996 5555543 79999999999 4667775 2368999999998 4666654
No 21
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=4.3e-32 Score=315.21 Aligned_cols=415 Identities=15% Similarity=0.133 Sum_probs=233.1
Q ss_pred ceEEEcCcccCCCccccccCcceEEEecCCCCCCCC-CC-CCCCceEEEccCCChhhc-ccCCCCCCcccEEEccCCCCC
Q 044302 142 RLLKIGNVQLPKGLEYLSNKLRLLVWHQYPLKSLPS-NL-QLDKIVEFEMCYSRIEEL-WKGIKPLNTLKVMKLSHSENL 218 (830)
Q Consensus 142 r~L~l~~~~l~~~~~~l~~~Lr~L~l~~~~l~~lp~-~~-~l~~L~~L~L~~n~i~~l-~~~~~~l~~L~~L~L~~~~~~ 218 (830)
++++++++.+......+|++|++|++++|.++.+|. .+ .+++|++|++++|.|+.+ |..+..+++|++|+|++|...
T Consensus 34 ~~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 113 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ 113 (562)
T ss_dssp CEEECTTSCCCSCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred cEEEcCCCCCccCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC
Confidence 444444444443333334445555555555444442 22 444455555555554444 333444455555555544422
Q ss_pred CCCCCCCCCCceeEEeeeCCcccc-cccccccCCCCccEEecCCCCCCccCCcccccCcc--cEEeccCccc--ccccCC
Q 044302 219 IKTPNFIEVPNLEVLDLEGCTRLR-EIHSSLVRHNKLILLNLKGCTSLTTLPGEIFMKSL--KTLVLSGCLK--LRKFPH 293 (830)
Q Consensus 219 ~~~~~~~~l~~L~~L~L~~~~~l~-~~~~~l~~l~~L~~L~L~~c~~l~~lp~~~~l~~L--~~L~L~~~~~--~~~~~~ 293 (830)
.+|.. .+++|++|++++|.... .+|..++++++|++|++++| .+.... ...+++| ++|++++|.+ ....|.
T Consensus 114 -~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n-~l~~~~-~~~l~~L~L~~L~L~~n~l~~~~~~~~ 189 (562)
T 3a79_B 114 -NISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA-KFRQLD-LLPVAHLHLSCILLDLVSYHIKGGETE 189 (562)
T ss_dssp -EECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECS-BCCTTT-TGGGTTSCEEEEEEEESSCCCCSSSCC
T ss_pred -ccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCC-ccccCc-hhhhhhceeeEEEeecccccccccCcc
Confidence 22222 44455555555433222 12344444555555555442 222110 0012233 4444444443 222222
Q ss_pred --------------------------CCCccccceEeeccccc-----ccccccchhcccCCcEEeccCCCCCCC----C
Q 044302 294 --------------------------VGGSMECLQELFLDETD-----IKEMPLSIEHLSGLILLTLKYCKNLSS----L 338 (830)
Q Consensus 294 --------------------------~~~~l~~L~~L~L~~~~-----i~~l~~~l~~l~~L~~L~L~~~~~~~~----~ 338 (830)
.+..+++|+.|++++|. +......+..+++|+.|++.++..... +
T Consensus 190 ~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~ 269 (562)
T 3a79_B 190 SLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKL 269 (562)
T ss_dssp EEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHH
T ss_pred cccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHH
Confidence 23456677777777764 222233456666777777766543322 1
Q ss_pred ccccccCccCcEEeecCCCCCCcCCc-c-----cCCCCCcEEEecCCcccccCc-ccC---CCCCccEEecCCccCcccc
Q 044302 339 PVTISSLKCLRTLKLSGCSKLKKFPQ-I-----VGMEGLSELYLDGTSITEVPS-SIE---LLPGIELLNLNDCKNLVRL 408 (830)
Q Consensus 339 ~~~l~~l~~L~~L~L~~~~~~~~~~~-~-----~~l~~L~~L~L~~~~i~~l~~-~~~---~l~~L~~L~L~~~~~l~~l 408 (830)
+.. ...++|++|++++|...+.+|. + ..++.|+.+++..+.+ .+|. .+. ..++|+.|++++|......
T Consensus 270 ~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~ 347 (562)
T 3a79_B 270 FQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSISDTPFIHMV 347 (562)
T ss_dssp HHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEEESSCCCCCC
T ss_pred HHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceEEEccCCCccccc
Confidence 111 1234888888888877656654 2 3344555555555555 4442 111 1256888888887654322
Q ss_pred cccccCCCCCCEEeccCCCCCCccCcccCCCCCccEEecCCCcccCCC---cccccCCCCcEEEcCCCCCCCCCCccccC
Q 044302 409 PRSINGLKALKTLSLSGCCKLENVPDTLGQVESLEELDISGTATRRPP---CSIFHMKNLKTLSFSGCNGPPSTASSLML 485 (830)
Q Consensus 409 ~~~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~n~i~~l~---~~l~~l~~L~~L~L~~~~~~~~~~~~~~l 485 (830)
....+++|++|++++|......|..++.+++|++|++++|.+..++ ..+..+++|++|++++|+..... ..
T Consensus 348 --~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~----~~ 421 (562)
T 3a79_B 348 --CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHA----YD 421 (562)
T ss_dssp --CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCC----SS
T ss_pred --CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCcc----Ch
Confidence 1256788888888888877777788888888888888888887654 45677888888888888754311 11
Q ss_pred CCCCCCCccCeecCCCCCCCCCccccccCCCCCCCEEeCCCCCCcccCcccCCCCccCEeeccccccccccCCC----CC
Q 044302 486 PSLSGLCSLTKLDLSDCGLGEGAILSDIGNLHSLKALYLSENNFVTLPASISGLFNLEYLKLEDCKRLQSLPQL----PP 561 (830)
Q Consensus 486 ~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~c~~l~~lp~l----p~ 561 (830)
..+..+++|++|++++|.++ +..+..+. ++|+.|++++|+++.+|..+..+++|++|+|++|+ ++.+|.- .+
T Consensus 422 ~~~~~l~~L~~L~l~~n~l~-~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~ 497 (562)
T 3a79_B 422 RTCAWAESILVLNLSSNMLT-GSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQ-LKSVPDGVFDRLT 497 (562)
T ss_dssp CCCCCCTTCCEEECCSSCCC-GGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSC-CCCCCTTSTTTCT
T ss_pred hhhcCcccCCEEECCCCCCC-cchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCC-CCCCCHHHHhcCC
Confidence 23667788888888888876 34444333 68888888888888888877788888888888874 5566642 24
Q ss_pred CcceeeccCCc
Q 044302 562 NVHNVRLNGCA 572 (830)
Q Consensus 562 sL~~L~i~~C~ 572 (830)
+|+.|++++++
T Consensus 498 ~L~~L~l~~N~ 508 (562)
T 3a79_B 498 SLQYIWLHDNP 508 (562)
T ss_dssp TCCCEECCSCC
T ss_pred CCCEEEecCCC
Confidence 56666666544
No 22
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=4.3e-31 Score=299.33 Aligned_cols=340 Identities=19% Similarity=0.271 Sum_probs=183.0
Q ss_pred CcceEEEecCCCCCCCCCCCCCCceEEEccCCChhhcccCCCCCCcccEEEccCCCCCCCCCCCCCCCceeEEeeeCCcc
Q 044302 161 KLRLLVWHQYPLKSLPSNLQLDKIVEFEMCYSRIEELWKGIKPLNTLKVMKLSHSENLIKTPNFIEVPNLEVLDLEGCTR 240 (830)
Q Consensus 161 ~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~ 240 (830)
+|+.|+++++.++.+|....+++|++|++++|.++.++. +..+++|++|++++|......+ +.++++|++|++++|.
T Consensus 47 ~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~- 123 (466)
T 1o6v_A 47 QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQ- 123 (466)
T ss_dssp TCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-
T ss_pred cccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCC-
Confidence 334444444444444432244444555555554444443 4444555555554443222222 4444444555444432
Q ss_pred cccccccccCCCCccEEecCCCCCCccCCcccccCcccEEeccCcccccccCCCCCccccceEeecccccccccccchhc
Q 044302 241 LREIHSSLVRHNKLILLNLKGCTSLTTLPGEIFMKSLKTLVLSGCLKLRKFPHVGGSMECLQELFLDETDIKEMPLSIEH 320 (830)
Q Consensus 241 l~~~~~~l~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~l~~ 320 (830)
+..++. +.++++|++|++++| .+..++....+++|+.|++++ .... .+ .++.+++|+.|++++|.+..++ .+..
T Consensus 124 l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~-~~~~-~~-~~~~l~~L~~L~l~~n~l~~~~-~l~~ 197 (466)
T 1o6v_A 124 ITDIDP-LKNLTNLNRLELSSN-TISDISALSGLTSLQQLSFGN-QVTD-LK-PLANLTTLERLDISSNKVSDIS-VLAK 197 (466)
T ss_dssp CCCCGG-GTTCTTCSEEEEEEE-EECCCGGGTTCTTCSEEEEEE-SCCC-CG-GGTTCTTCCEEECCSSCCCCCG-GGGG
T ss_pred CCCChH-HcCCCCCCEEECCCC-ccCCChhhccCCcccEeecCC-cccC-ch-hhccCCCCCEEECcCCcCCCCh-hhcc
Confidence 222222 444444444444442 233333211244444444432 1111 11 1444555555555555555443 2444
Q ss_pred ccCCcEEeccCCCCCCCCccccccCccCcEEeecCCCCCCcCCcccCCCCCcEEEecCCcccccCcccCCCCCccEEecC
Q 044302 321 LSGLILLTLKYCKNLSSLPVTISSLKCLRTLKLSGCSKLKKFPQIVGMEGLSELYLDGTSITEVPSSIELLPGIELLNLN 400 (830)
Q Consensus 321 l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~ 400 (830)
+++|+.|++++|......+ ++.+++|+ .|++++|.++.++ .+..+++|+.|+++
T Consensus 198 l~~L~~L~l~~n~l~~~~~--~~~l~~L~-----------------------~L~l~~n~l~~~~-~l~~l~~L~~L~l~ 251 (466)
T 1o6v_A 198 LTNLESLIATNNQISDITP--LGILTNLD-----------------------ELSLNGNQLKDIG-TLASLTNLTDLDLA 251 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG--GGGCTTCC-----------------------EEECCSSCCCCCG-GGGGCTTCSEEECC
T ss_pred CCCCCEEEecCCccccccc--ccccCCCC-----------------------EEECCCCCcccch-hhhcCCCCCEEECC
Confidence 5555555555544433322 33344444 4444444444432 24455555555555
Q ss_pred CccCcccccccccCCCCCCEEeccCCCCCCccCcccCCCCCccEEecCCCcccCCCcccccCCCCcEEEcCCCCCCCCCC
Q 044302 401 DCKNLVRLPRSINGLKALKTLSLSGCCKLENVPDTLGQVESLEELDISGTATRRPPCSIFHMKNLKTLSFSGCNGPPSTA 480 (830)
Q Consensus 401 ~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~n~i~~l~~~l~~l~~L~~L~L~~~~~~~~~~ 480 (830)
+|......+ +..+++|+.|++++|......+ +..+++|++|++++|.+..++. +..+++|+.|++++|+...
T Consensus 252 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~--- 323 (466)
T 1o6v_A 252 NNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISD--- 323 (466)
T ss_dssp SSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSC---
T ss_pred CCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCC---
Confidence 555443332 5556666666666665544332 5666777777777777776654 6677788888888776543
Q ss_pred ccccCCCCCCCCccCeecCCCCCCCCCccccccCCCCCCCEEeCCCCCCcccCcccCCCCccCEeeccccc
Q 044302 481 SSLMLPSLSGLCSLTKLDLSDCGLGEGAILSDIGNLHSLKALYLSENNFVTLPASISGLFNLEYLKLEDCK 551 (830)
Q Consensus 481 ~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~c~ 551 (830)
.+.+..+++|++|++++|.+.. + ..+..+++|+.|++++|++..+++ +..+++|+.|++++|+
T Consensus 324 ----~~~~~~l~~L~~L~l~~n~l~~--~-~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 324 ----ISPVSSLTKLQRLFFYNNKVSD--V-SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQA 386 (466)
T ss_dssp ----CGGGGGCTTCCEEECCSSCCCC--C-GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEE
T ss_pred ----chhhccCccCCEeECCCCccCC--c-hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCc
Confidence 2226677888888888888863 2 467888899999999998887765 8888999999999885
No 23
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.98 E-value=4.3e-31 Score=298.75 Aligned_cols=133 Identities=20% Similarity=0.160 Sum_probs=102.3
Q ss_pred CCCCEEeccCCCCCCccCcccCCCCCccEEecCCCcccCC-CcccccCCCCcEEEcCCCCCCCCCCccccCCCCCCCCcc
Q 044302 416 KALKTLSLSGCCKLENVPDTLGQVESLEELDISGTATRRP-PCSIFHMKNLKTLSFSGCNGPPSTASSLMLPSLSGLCSL 494 (830)
Q Consensus 416 ~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~n~i~~l-~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~l~~L 494 (830)
++|+.|++++|......|..++.+++|++|++++|.+..+ |..+..+++|++|++++|..... ....+.++++|
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-----~~~~~~~l~~L 349 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSI-----DSRMFENLDKL 349 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE-----CGGGGTTCTTC
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCc-----ChhHhcCcccC
Confidence 5677777777777777777777777777777777777754 44666777888888887765321 12236778888
Q ss_pred CeecCCCCCCCCCccccccCCCCCCCEEeCCCCCCcccCcc-cCCCCccCEeecccccccc
Q 044302 495 TKLDLSDCGLGEGAILSDIGNLHSLKALYLSENNFVTLPAS-ISGLFNLEYLKLEDCKRLQ 554 (830)
Q Consensus 495 ~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~-l~~L~~L~~L~L~~c~~l~ 554 (830)
++|++++|.++ ...+..+..+++|++|++++|+++.+|.. +..+++|++|+|++|+.-.
T Consensus 350 ~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 350 EVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp CEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CEEECCCCccc-ccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCccc
Confidence 88899888886 55678899999999999999999988864 5889999999999997543
No 24
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.98 E-value=4.5e-31 Score=296.60 Aligned_cols=401 Identities=18% Similarity=0.182 Sum_probs=204.8
Q ss_pred ccEEEEEeeccCCCccccccChHhhhCCCCCceEEEcCccc----CCCccccc------------cCcceEEEecCCCCC
Q 044302 111 EVVEGMIIDDHFFPENEMHLSAKAFSLMTNLRLLKIGNVQL----PKGLEYLS------------NKLRLLVWHQYPLKS 174 (830)
Q Consensus 111 ~~v~~i~l~~~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~l----~~~~~~l~------------~~Lr~L~l~~~~l~~ 174 (830)
..++.+.+... .. ..++ ..|.++++|++|++++|.+ +..+..+. .++++|+++++.++.
T Consensus 11 ~~L~~L~l~~n-~l---~~iP-~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~ 85 (454)
T 1jl5_A 11 TFLQEPLRHSS-NL---TEMP-VEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS 85 (454)
T ss_dssp ----------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC
T ss_pred ccchhhhcccC-ch---hhCC-hhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc
Confidence 34556655554 22 2343 5688888899998888764 34444332 135888888888888
Q ss_pred CCCCCCCCCceEEEccCCChhhcccCCCCCCcccEEEccCCCCCCCCCCCCCCCceeEEeeeCCcccccccccccCCCCc
Q 044302 175 LPSNLQLDKIVEFEMCYSRIEELWKGIKPLNTLKVMKLSHSENLIKTPNFIEVPNLEVLDLEGCTRLREIHSSLVRHNKL 254 (830)
Q Consensus 175 lp~~~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L 254 (830)
+|. .+++|++|++++|.++.+|.. +++|++|++++|.. ..++.+ .++|++|++++|. +..+| +++++++|
T Consensus 86 lp~--~~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l-~~l~~~--~~~L~~L~L~~n~-l~~lp-~~~~l~~L 155 (454)
T 1jl5_A 86 LPE--LPPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNL-KALSDL--PPLLEYLGVSNNQ-LEKLP-ELQNSSFL 155 (454)
T ss_dssp CCS--CCTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCC-SCCCSC--CTTCCEEECCSSC-CSSCC-CCTTCTTC
T ss_pred CCC--CcCCCCEEEccCCcCCccccc---cCCCcEEECCCCcc-CcccCC--CCCCCEEECcCCC-CCCCc-ccCCCCCC
Confidence 887 357888888888888888753 37888888888853 333332 2688888888864 44576 58888888
Q ss_pred cEEecCCCCCCccCCcccccCcccEEeccCcccccccCCCCCccccceEeecccccccccccchhcccCCcEEeccCCCC
Q 044302 255 ILLNLKGCTSLTTLPGEIFMKSLKTLVLSGCLKLRKFPHVGGSMECLQELFLDETDIKEMPLSIEHLSGLILLTLKYCKN 334 (830)
Q Consensus 255 ~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~l~~l~~L~~L~L~~~~~ 334 (830)
++|++++ +.++.+|.. ..+|++|++++|.+.. +| .++.+++|+.|++++|.+..+|... ++|+.|++++|..
T Consensus 156 ~~L~l~~-N~l~~lp~~--~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~l 227 (454)
T 1jl5_A 156 KIIDVDN-NSLKKLPDL--PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNIL 227 (454)
T ss_dssp CEEECCS-SCCSCCCCC--CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSCC
T ss_pred CEEECCC-CcCcccCCC--cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCCcC
Confidence 8888888 456666653 3578888888876554 45 4777788888888888777766532 4677777777755
Q ss_pred CCCCccccccCccCcEEeecCCCCCCcCCcccCCCCCcEEEecCCcccccCcccCCCCCccEEecCCccCcccccccccC
Q 044302 335 LSSLPVTISSLKCLRTLKLSGCSKLKKFPQIVGMEGLSELYLDGTSITEVPSSIELLPGIELLNLNDCKNLVRLPRSING 414 (830)
Q Consensus 335 ~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~ 414 (830)
. .+| .+..+++|++|++++|.... +|. .+++|+.|++++|.++.+|.. +++|+.|++++|.... +|. .
T Consensus 228 ~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~--~~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~-l~~---~ 295 (454)
T 1jl5_A 228 E-ELP-ELQNLPFLTTIYADNNLLKT-LPD--LPPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSG-LSE---L 295 (454)
T ss_dssp S-SCC-CCTTCTTCCEEECCSSCCSS-CCS--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSE-ESC---C
T ss_pred C-ccc-ccCCCCCCCEEECCCCcCCc-ccc--cccccCEEECCCCcccccCcc---cCcCCEEECcCCccCc-ccC---c
Confidence 4 455 36677777777777665443 333 235667777777766666543 3566666666665433 111 1
Q ss_pred CCCCCEEeccCCCCCCccCcccCCCCCccEEecCCCcccCCCcccccCCCCcEEEcCCCCCCCCCCccccCCCCCCCCcc
Q 044302 415 LKALKTLSLSGCCKLENVPDTLGQVESLEELDISGTATRRPPCSIFHMKNLKTLSFSGCNGPPSTASSLMLPSLSGLCSL 494 (830)
Q Consensus 415 l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~n~i~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~l~~L 494 (830)
.++|+.|++++|.... ++. ..++|++|++++|.+..+|.. +++|++|++++|+... +|. .+++|
T Consensus 296 ~~~L~~L~l~~N~l~~-i~~---~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~l~~-------lp~--~l~~L 359 (454)
T 1jl5_A 296 PPNLYYLNASSNEIRS-LCD---LPPSLEELNVSNNKLIELPAL---PPRLERLIASFNHLAE-------VPE--LPQNL 359 (454)
T ss_dssp CTTCCEEECCSSCCSE-ECC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSC-------CCC--CCTTC
T ss_pred CCcCCEEECcCCcCCc-ccC---CcCcCCEEECCCCcccccccc---CCcCCEEECCCCcccc-------ccc--hhhhc
Confidence 1456666666654432 111 113566666666665555443 3555555555554331 122 24455
Q ss_pred CeecCCCCCCCCC-ccccccCCCCCCCEEeCCCCCCcccCcccCCCCccCEeeccccccccccCCCCCCcceeeccCCcc
Q 044302 495 TKLDLSDCGLGEG-AILSDIGNLHSLKALYLSENNFVTLPASISGLFNLEYLKLEDCKRLQSLPQLPPNVHNVRLNGCAS 573 (830)
Q Consensus 495 ~~L~Ls~~~l~~~-~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~c~~l~~lp~lp~sL~~L~i~~C~~ 573 (830)
++|++++|.+..- .+|..+. .|.. ++.+..+|. .+++|++|++++|+ ++.+|.+|++++.|.+.+|.-
T Consensus 360 ~~L~L~~N~l~~l~~ip~~l~------~L~~-n~~~~~i~~---~~~~L~~L~ls~N~-l~~~~~iP~sl~~L~~~~~~~ 428 (454)
T 1jl5_A 360 KQLHVEYNPLREFPDIPESVE------DLRM-NSHLAEVPE---LPQNLKQLHVETNP-LREFPDIPESVEDLRMNSERV 428 (454)
T ss_dssp CEEECCSSCCSSCCCCCTTCC------EEEC-CC----------------------------------------------
T ss_pred cEEECCCCCCCcCCCChHHHH------hhhh-ccccccccc---ccCcCCEEECCCCc-CCccccchhhHhheeCcCccc
Confidence 5555555555410 1222222 1211 111223332 13789999999875 666788888998888877653
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.97 E-value=1.9e-30 Score=293.44 Aligned_cols=371 Identities=16% Similarity=0.110 Sum_probs=244.3
Q ss_pred EEEcCcccCCCccccccCcceEEEecCCCCCC-CCCC-CCCCceEEEccCCChh-hc-ccCCCCCCcccEEEccCCCCCC
Q 044302 144 LKIGNVQLPKGLEYLSNKLRLLVWHQYPLKSL-PSNL-QLDKIVEFEMCYSRIE-EL-WKGIKPLNTLKVMKLSHSENLI 219 (830)
Q Consensus 144 L~l~~~~l~~~~~~l~~~Lr~L~l~~~~l~~l-p~~~-~l~~L~~L~L~~n~i~-~l-~~~~~~l~~L~~L~L~~~~~~~ 219 (830)
++.+++.+..... +|++|++|++++|.++.+ |..+ .+++|++|++++|.+. .+ +..+..+++|++|+|++|....
T Consensus 15 ~~c~~~~l~~lp~-l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~ 93 (455)
T 3v47_A 15 AICINRGLHQVPE-LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ 93 (455)
T ss_dssp EECCSSCCSSCCC-CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCE
T ss_pred cCcCCCCcccCCC-CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCc
Confidence 4444444443333 556777777777777766 4444 7777888888887775 44 3457777888888888776554
Q ss_pred CC-CCCCCCCceeEEeeeCCccccccccc--ccCCCCccEEecCCCCCCccCCcc-cc-cCcccEEeccCcccccccCCC
Q 044302 220 KT-PNFIEVPNLEVLDLEGCTRLREIHSS--LVRHNKLILLNLKGCTSLTTLPGE-IF-MKSLKTLVLSGCLKLRKFPHV 294 (830)
Q Consensus 220 ~~-~~~~~l~~L~~L~L~~~~~l~~~~~~--l~~l~~L~~L~L~~c~~l~~lp~~-~~-l~~L~~L~L~~~~~~~~~~~~ 294 (830)
.. ..|.++++|++|++++|.....++.. +..+++|++|++++|......|.. +. +++|++|++++|.+....+..
T Consensus 94 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 173 (455)
T 3v47_A 94 LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEED 173 (455)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTT
T ss_pred cChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhh
Confidence 43 35777788888888776554444444 777778888888774433333544 22 777888888877777666666
Q ss_pred CCcc--ccceEeecccccccccccc---------hhcccCCcEEeccCCCCCCCCccccccC---ccCcEEeecCCCCCC
Q 044302 295 GGSM--ECLQELFLDETDIKEMPLS---------IEHLSGLILLTLKYCKNLSSLPVTISSL---KCLRTLKLSGCSKLK 360 (830)
Q Consensus 295 ~~~l--~~L~~L~L~~~~i~~l~~~---------l~~l~~L~~L~L~~~~~~~~~~~~l~~l---~~L~~L~L~~~~~~~ 360 (830)
+..+ .+|+.|+++++.+..++.. +..+++|+.|++++|......|..+... ++|+.|++++|....
T Consensus 174 l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 253 (455)
T 3v47_A 174 LLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMG 253 (455)
T ss_dssp SGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTS
T ss_pred hhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccc
Confidence 6655 5777777777777765532 2344667777777776666555554433 666777776665433
Q ss_pred cCCcccCCCCCcEEEecCCcccccCcccCCCCCccEEecCCccCcccccccccCCCCCCEEeccCCCCCCccCcccCCCC
Q 044302 361 KFPQIVGMEGLSELYLDGTSITEVPSSIELLPGIELLNLNDCKNLVRLPRSINGLKALKTLSLSGCCKLENVPDTLGQVE 440 (830)
Q Consensus 361 ~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~ 440 (830)
.......++.+. .....-...++|+.|++++|......|..+..+++|++|++++|......|..++.++
T Consensus 254 ~~~~~~~~~~~~----------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 323 (455)
T 3v47_A 254 SSFGHTNFKDPD----------NFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLT 323 (455)
T ss_dssp CCTTCCSSCCCC----------TTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred cccchhhhccCc----------ccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcc
Confidence 211111100000 0000011235777777777777777777777788888888888777777777777888
Q ss_pred CccEEecCCCcccCC-CcccccCCCCcEEEcCCCCCCCCCCccccCCCCCCCCccCeecCCCCCCCCCccccccCCCCCC
Q 044302 441 SLEELDISGTATRRP-PCSIFHMKNLKTLSFSGCNGPPSTASSLMLPSLSGLCSLTKLDLSDCGLGEGAILSDIGNLHSL 519 (830)
Q Consensus 441 ~L~~L~L~~n~i~~l-~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L 519 (830)
+|++|++++|.+..+ +..+..+++|++|++++|++... ....+.++++|++|++++|+++ ...+..+..+++|
T Consensus 324 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-----~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L 397 (455)
T 3v47_A 324 HLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRAL-----GDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSL 397 (455)
T ss_dssp TCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEE-----CTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTC
T ss_pred cCCEEECCCCccCCcChhHhcCcccCCEEECCCCccccc-----ChhhccccccccEEECCCCccc-cCCHhHhccCCcc
Confidence 888888888887755 45667788888888888875421 2234778888899999998887 3444567889999
Q ss_pred CEEeCCCCCCcc
Q 044302 520 KALYLSENNFVT 531 (830)
Q Consensus 520 ~~L~L~~n~l~~ 531 (830)
+.|++++|.+..
T Consensus 398 ~~L~l~~N~l~~ 409 (455)
T 3v47_A 398 QKIWLHTNPWDC 409 (455)
T ss_dssp CEEECCSSCBCC
T ss_pred cEEEccCCCccc
Confidence 999999998873
No 26
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=5.8e-30 Score=290.05 Aligned_cols=341 Identities=18% Similarity=0.254 Sum_probs=249.6
Q ss_pred CCCceEEEccCCChhhcccCCCCCCcccEEEccCCCCCCCCCCCCCCCceeEEeeeCCcccccccccccCCCCccEEecC
Q 044302 181 LDKIVEFEMCYSRIEELWKGIKPLNTLKVMKLSHSENLIKTPNFIEVPNLEVLDLEGCTRLREIHSSLVRHNKLILLNLK 260 (830)
Q Consensus 181 l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~ 260 (830)
+.+|+.|++.++.++.+| ++..+++|++|+|++|.... .+.+..+++|++|++++|.. ..++. +.++++|++|+++
T Consensus 45 l~~l~~L~l~~~~i~~l~-~~~~l~~L~~L~Ls~n~l~~-~~~~~~l~~L~~L~l~~n~l-~~~~~-~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTD-ITPLKNLTKLVDILMNNNQI-ADITP-LANLTNLTGLTLF 120 (466)
T ss_dssp HHTCCEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSCC-CCCGG-GTTCTTCCEEECC
T ss_pred hccccEEecCCCCCccCc-chhhhcCCCEEECCCCccCC-chhhhccccCCEEECCCCcc-ccChh-hcCCCCCCEEECC
Confidence 567777888877777776 46677777777777775333 33377777777777777533 33333 6667777777776
Q ss_pred CCCCCccCCcccccCcccEEeccCcccccccCCCCCccccceEeecccccccccccchhcccCCcEEeccCCCCCCCCcc
Q 044302 261 GCTSLTTLPGEIFMKSLKTLVLSGCLKLRKFPHVGGSMECLQELFLDETDIKEMPLSIEHLSGLILLTLKYCKNLSSLPV 340 (830)
Q Consensus 261 ~c~~l~~lp~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~l~~l~~L~~L~L~~~~~~~~~~~ 340 (830)
+| .++.++. ++.+++|++|++++|.+..++ .+..+++|+.|++.+ ... ..+
T Consensus 121 ~n-~l~~~~~------------------------~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~-~~~-~~~- 171 (466)
T 1o6v_A 121 NN-QITDIDP------------------------LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGN-QVT-DLK- 171 (466)
T ss_dssp SS-CCCCCGG------------------------GTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEE-SCC-CCG-
T ss_pred CC-CCCCChH------------------------HcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCC-ccc-Cch-
Confidence 63 4444443 334444455555555554444 255566666666642 111 222
Q ss_pred ccccCccCcEEeecCCCCCCcCCcccCCCCCcEEEecCCcccccCcccCCCCCccEEecCCccCcccccccccCCCCCCE
Q 044302 341 TISSLKCLRTLKLSGCSKLKKFPQIVGMEGLSELYLDGTSITEVPSSIELLPGIELLNLNDCKNLVRLPRSINGLKALKT 420 (830)
Q Consensus 341 ~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~ 420 (830)
.+..+++|+.|++++|.. ..++.+..+++|+.|++++|.+..++. ++.+++|+.|++++|..... ..+..+++|+.
T Consensus 172 ~~~~l~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~ 247 (466)
T 1o6v_A 172 PLANLTTLERLDISSNKV-SDISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTD 247 (466)
T ss_dssp GGTTCTTCCEEECCSSCC-CCCGGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSE
T ss_pred hhccCCCCCEEECcCCcC-CCChhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccc--hhhhcCCCCCE
Confidence 266777777777777763 334557778889999999998887765 77899999999999986553 35788999999
Q ss_pred EeccCCCCCCccCcccCCCCCccEEecCCCcccCCCcccccCCCCcEEEcCCCCCCCCCCccccCCCCCCCCccCeecCC
Q 044302 421 LSLSGCCKLENVPDTLGQVESLEELDISGTATRRPPCSIFHMKNLKTLSFSGCNGPPSTASSLMLPSLSGLCSLTKLDLS 500 (830)
Q Consensus 421 L~L~~~~~l~~~~~~l~~l~~L~~L~L~~n~i~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls 500 (830)
|++++|......+ +..+++|++|++++|.+..++. +..+++|+.|++++|+... ++.+..+++|+.|+++
T Consensus 248 L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~-------~~~~~~l~~L~~L~L~ 317 (466)
T 1o6v_A 248 LDLANNQISNLAP--LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLED-------ISPISNLKNLTYLTLY 317 (466)
T ss_dssp EECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSC-------CGGGGGCTTCSEEECC
T ss_pred EECCCCccccchh--hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccC-------chhhcCCCCCCEEECc
Confidence 9999998776554 8899999999999999998876 8889999999999998653 3347889999999999
Q ss_pred CCCCCCCccccccCCCCCCCEEeCCCCCCcccCcccCCCCccCEeeccccccccccC-CCCCCcceeeccCCc
Q 044302 501 DCGLGEGAILSDIGNLHSLKALYLSENNFVTLPASISGLFNLEYLKLEDCKRLQSLP-QLPPNVHNVRLNGCA 572 (830)
Q Consensus 501 ~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~c~~l~~lp-~lp~sL~~L~i~~C~ 572 (830)
+|.+.+ ..+ +..+++|+.|++++|.+..++ .+..+++|+.|++++|+.....| .-.++|+.|++.+|+
T Consensus 318 ~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 318 FNNISD-ISP--VSSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQA 386 (466)
T ss_dssp SSCCSC-CGG--GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCBCGGGTTCTTCCEEECCCEE
T ss_pred CCcCCC-chh--hccCccCCEeECCCCccCCch-hhccCCCCCEEeCCCCccCccchhhcCCCCCEEeccCCc
Confidence 999973 333 789999999999999999885 78899999999999996544333 112578999998876
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=1.7e-30 Score=301.78 Aligned_cols=400 Identities=18% Similarity=0.155 Sum_probs=289.2
Q ss_pred CcceEEEecCCCCCCCCCCCCCCceEEEccCCChhhcc-cCCCCCCcccEEEccCCCCCCCCC-CCCCCCceeEEeeeCC
Q 044302 161 KLRLLVWHQYPLKSLPSNLQLDKIVEFEMCYSRIEELW-KGIKPLNTLKVMKLSHSENLIKTP-NFIEVPNLEVLDLEGC 238 (830)
Q Consensus 161 ~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~-~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~L~~~ 238 (830)
..++++++++.++.+|..+. ++|++|++++|.|+.++ ..+..+++|++|+|++|......+ .|.++++|++|++++|
T Consensus 32 ~~~~l~ls~~~L~~ip~~~~-~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 32 LESMVDYSNRNLTHVPKDLP-PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp -CCEEECTTSCCCSCCTTSC-TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred CCcEEEcCCCCCccCCCCCC-CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 45899999999999998764 89999999999999986 589999999999999998665544 5999999999999996
Q ss_pred cccccccccccCCCCccEEecCCCCCCccCC--cccc-cCcccEEeccCcccccccCCCCCccccc--eEeecccccc--
Q 044302 239 TRLREIHSSLVRHNKLILLNLKGCTSLTTLP--GEIF-MKSLKTLVLSGCLKLRKFPHVGGSMECL--QELFLDETDI-- 311 (830)
Q Consensus 239 ~~l~~~~~~l~~l~~L~~L~L~~c~~l~~lp--~~~~-l~~L~~L~L~~~~~~~~~~~~~~~l~~L--~~L~L~~~~i-- 311 (830)
. +..+|.. .+++|++|++++ +.+..+| ..+. +++|++|++++|.+... .+..+++| +.|++++|.+
T Consensus 111 ~-l~~lp~~--~l~~L~~L~Ls~-N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~ 183 (562)
T 3a79_B 111 R-LQNISCC--PMASLRHLDLSF-NDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHI 183 (562)
T ss_dssp C-CCEECSC--CCTTCSEEECCS-SCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCC
T ss_pred c-CCccCcc--ccccCCEEECCC-CCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccc
Confidence 5 5678877 899999999999 5566654 4555 99999999999887653 45556666 9999999988
Q ss_pred c-ccccchhccc-CCcEEeccCCCCCCCCcc-ccccCccCcEEeecCCCCC-----CcCCccc-----------------
Q 044302 312 K-EMPLSIEHLS-GLILLTLKYCKNLSSLPV-TISSLKCLRTLKLSGCSKL-----KKFPQIV----------------- 366 (830)
Q Consensus 312 ~-~l~~~l~~l~-~L~~L~L~~~~~~~~~~~-~l~~l~~L~~L~L~~~~~~-----~~~~~~~----------------- 366 (830)
. ..|..+..+. ..-.+++++|.....++. .+..+++|+.|++++|... ..++.+.
T Consensus 184 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~ 263 (562)
T 3a79_B 184 KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTW 263 (562)
T ss_dssp CSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECH
T ss_pred cccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcH
Confidence 4 4455555443 111345566655544332 4556677777777765310 0011111
Q ss_pred ----------CCCCCcEEEecCCccc-ccCccc-----CCCCCccEEecCCccCccccc-ccccC---CCCCCEEeccCC
Q 044302 367 ----------GMEGLSELYLDGTSIT-EVPSSI-----ELLPGIELLNLNDCKNLVRLP-RSING---LKALKTLSLSGC 426 (830)
Q Consensus 367 ----------~l~~L~~L~L~~~~i~-~l~~~~-----~~l~~L~~L~L~~~~~l~~l~-~~~~~---l~~L~~L~L~~~ 426 (830)
..++|+.|++++|.+. .+|..+ ..++.|+.+++..+.. .+| ..+.. ..+|+.|++++|
T Consensus 264 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n 341 (562)
T 3a79_B 264 KCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDT 341 (562)
T ss_dssp HHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESS
T ss_pred HHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCC
Confidence 2336777777777766 666655 4555555555555443 233 12211 256889999888
Q ss_pred CCCCccCcccCCCCCccEEecCCCcccC-CCcccccCCCCcEEEcCCCCCCCCCCccccCCCCCCCCccCeecCCCCCCC
Q 044302 427 CKLENVPDTLGQVESLEELDISGTATRR-PPCSIFHMKNLKTLSFSGCNGPPSTASSLMLPSLSGLCSLTKLDLSDCGLG 505 (830)
Q Consensus 427 ~~l~~~~~~l~~l~~L~~L~L~~n~i~~-l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~ 505 (830)
...... ..+.+++|++|++++|.+.. +|..+..+++|++|++++|+...... ....+.++++|++|++++|.+.
T Consensus 342 ~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~~~l~~L~~L~l~~N~l~ 416 (562)
T 3a79_B 342 PFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFK---VALMTKNMSSLETLDVSLNSLN 416 (562)
T ss_dssp CCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTH---HHHTTTTCTTCCEEECTTSCCB
T ss_pred Cccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCccc---chhhhcCCCCCCEEECCCCcCC
Confidence 764322 12678999999999999986 78889999999999999998653110 0123788999999999999997
Q ss_pred CCccccccCCCCCCCEEeCCCCCCc-ccCcccCCCCccCEeeccccccccccCC-C--CCCcceeeccCCcccccccc
Q 044302 506 EGAILSDIGNLHSLKALYLSENNFV-TLPASISGLFNLEYLKLEDCKRLQSLPQ-L--PPNVHNVRLNGCASLVTLLG 579 (830)
Q Consensus 506 ~~~~~~~l~~l~~L~~L~L~~n~l~-~lp~~l~~L~~L~~L~L~~c~~l~~lp~-l--p~sL~~L~i~~C~~L~~~~~ 579 (830)
.......+..+++|+.|++++|.++ .+|..+. ++|++|++++| .++.+|. + .++|+.|+++++. +++++.
T Consensus 417 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~ 490 (562)
T 3a79_B 417 SHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASNQ-LKSVPD 490 (562)
T ss_dssp SCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSSC-CCCCCT
T ss_pred CccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCC-cCcccChhhcCCCCCCEEECCCCC-CCCCCH
Confidence 3244456889999999999999997 4554443 79999999999 5777875 2 2689999998874 555554
No 28
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=3.7e-30 Score=303.86 Aligned_cols=422 Identities=18% Similarity=0.146 Sum_probs=251.9
Q ss_pred CCceEEEcCcccC----CCccccccCcceEEEecCCCCCCCCC-C-CCCCceEEEccCCChhhccc-CCCCCCcccEEEc
Q 044302 140 NLRLLKIGNVQLP----KGLEYLSNKLRLLVWHQYPLKSLPSN-L-QLDKIVEFEMCYSRIEELWK-GIKPLNTLKVMKL 212 (830)
Q Consensus 140 ~Lr~L~l~~~~l~----~~~~~l~~~Lr~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~n~i~~l~~-~~~~l~~L~~L~L 212 (830)
+++.|++++|+|. ..|..++ +|++|++++|.++.+|.. | .+++|++|+|++|+|+.+|. .+..+++|++|+|
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~-~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFP-ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCT-TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCC-CCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 5667777776653 2344554 677777777776666553 3 56677777777777766654 3566677777777
Q ss_pred cCCCCCCCCC-CCCCCCceeEEeeeCCcccc-cccccccCCCCccEEecCCCCCCccCCcc-cc-cCc----ccEEeccC
Q 044302 213 SHSENLIKTP-NFIEVPNLEVLDLEGCTRLR-EIHSSLVRHNKLILLNLKGCTSLTTLPGE-IF-MKS----LKTLVLSG 284 (830)
Q Consensus 213 ~~~~~~~~~~-~~~~l~~L~~L~L~~~~~l~-~~~~~l~~l~~L~~L~L~~c~~l~~lp~~-~~-l~~----L~~L~L~~ 284 (830)
++|......+ .|+++++|++|++++|.... .+|..++.+++|++|++++ +.++.++.. +. +.+ +..++++.
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~l~~L~~l~~~~~~~~ls~ 210 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS-NKIQSIYCTDLRVLHQMPLLNLSLDLSL 210 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS-SCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccC-ccccccccccccchhhhhhhhhhhhccc
Confidence 7665433332 36666777777776654332 3455666666777777766 344444322 22 222 23455555
Q ss_pred cccccccCCCCCccccceEeeccccccc--ccccchhcccCCcEEec---------------------------------
Q 044302 285 CLKLRKFPHVGGSMECLQELFLDETDIK--EMPLSIEHLSGLILLTL--------------------------------- 329 (830)
Q Consensus 285 ~~~~~~~~~~~~~l~~L~~L~L~~~~i~--~l~~~l~~l~~L~~L~L--------------------------------- 329 (830)
+.+....+..+ ....++.+.+.++... ..+..+..+..++...+
T Consensus 211 n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~ 289 (635)
T 4g8a_A 211 NPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 289 (635)
T ss_dssp CCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEE
T ss_pred CcccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhh
Confidence 54443333322 2233445555443221 11111222222222221
Q ss_pred ------------------------cCCCCCCCCccccccCccCcEEeecCCCCCCc--------------------CCcc
Q 044302 330 ------------------------KYCKNLSSLPVTISSLKCLRTLKLSGCSKLKK--------------------FPQI 365 (830)
Q Consensus 330 ------------------------~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~--------------------~~~~ 365 (830)
.++.... ...+.....|+.|++.+|..... .+..
T Consensus 290 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~ 367 (635)
T 4g8a_A 290 YLDYYLDGIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE 367 (635)
T ss_dssp CCCSCEEECTTTTGGGTTCSEEEEESCEEEE--CGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCC
T ss_pred hhcccccchhhhhhhhccccccccccccccc--ccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCccc
Confidence 1111000 01122333455555554432211 1112
Q ss_pred cCCCCCcEEEecCCcccc---cCcccCCCCCccEEecCCccCcccccccccCCCCCCEEeccCCCCCCccC-cccCCCCC
Q 044302 366 VGMEGLSELYLDGTSITE---VPSSIELLPGIELLNLNDCKNLVRLPRSINGLKALKTLSLSGCCKLENVP-DTLGQVES 441 (830)
Q Consensus 366 ~~l~~L~~L~L~~~~i~~---l~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~-~~l~~l~~ 441 (830)
..+++|+.|++++|.+.. .+.....+.+|+.|++..+.... .+..+..+++|+.+++..+......+ ..+..+++
T Consensus 368 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~ 446 (635)
T 4g8a_A 368 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 446 (635)
T ss_dssp CBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTT
T ss_pred ccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccccccccc
Confidence 235566666666665542 23334455666666666554433 34456678888888888776655444 45778889
Q ss_pred ccEEecCCCcccCC-CcccccCCCCcEEEcCCCCCCCCCCccccCCCCCCCCccCeecCCCCCCCCCccccccCCCCCCC
Q 044302 442 LEELDISGTATRRP-PCSIFHMKNLKTLSFSGCNGPPSTASSLMLPSLSGLCSLTKLDLSDCGLGEGAILSDIGNLHSLK 520 (830)
Q Consensus 442 L~~L~L~~n~i~~l-~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~ 520 (830)
++.++++.|.+... +..+..+++|+.|++++|..... .....+..+++|++|+|++|++. +..|..+.++++|+
T Consensus 447 l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~----~~~~~~~~l~~L~~L~Ls~N~L~-~l~~~~f~~l~~L~ 521 (635)
T 4g8a_A 447 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN----FLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQ 521 (635)
T ss_dssp CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG----EECSCCTTCTTCCEEECTTSCCC-EECTTTTTTCTTCC
T ss_pred cccccccccccccccccccccchhhhhhhhhhcccccc----cCchhhhhccccCEEECCCCccC-CcChHHHcCCCCCC
Confidence 99999999988744 45566789999999998874321 11234788999999999999997 56678899999999
Q ss_pred EEeCCCCCCcccCc-ccCCCCccCEeeccccccccccCC----CCCCcceeeccCCc
Q 044302 521 ALYLSENNFVTLPA-SISGLFNLEYLKLEDCKRLQSLPQ----LPPNVHNVRLNGCA 572 (830)
Q Consensus 521 ~L~L~~n~l~~lp~-~l~~L~~L~~L~L~~c~~l~~lp~----lp~sL~~L~i~~C~ 572 (830)
.|+|++|+++.++. .+..+++|++|+|++|+.....|+ +|++|+.|++++.+
T Consensus 522 ~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 522 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp EEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred EEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 99999999998864 578999999999999864443332 56789999888754
No 29
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.97 E-value=3e-30 Score=289.90 Aligned_cols=358 Identities=22% Similarity=0.243 Sum_probs=265.6
Q ss_pred cCcceEEEecCCCCCCCCCC-CCCCceEEEccCCChh-hcccCCCCCCcc-------------cEEEccCCCCCCCCCCC
Q 044302 160 NKLRLLVWHQYPLKSLPSNL-QLDKIVEFEMCYSRIE-ELWKGIKPLNTL-------------KVMKLSHSENLIKTPNF 224 (830)
Q Consensus 160 ~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~i~-~l~~~~~~l~~L-------------~~L~L~~~~~~~~~~~~ 224 (830)
..|++|.++++.++.+|..+ .+.+|++|++++|.+. .+|.+++.+.+| ++|++++|. +..+|.+
T Consensus 11 ~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~-l~~lp~~ 89 (454)
T 1jl5_A 11 TFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG-LSSLPEL 89 (454)
T ss_dssp -----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-CSCCCSC
T ss_pred ccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc-cccCCCC
Confidence 47888888888888888877 8999999999999887 578888888775 999999986 4445543
Q ss_pred CCCCceeEEeeeCCcccccccccccCCCCccEEecCCCCCCccCCcccccCcccEEeccCcccccccCCCCCccccceEe
Q 044302 225 IEVPNLEVLDLEGCTRLREIHSSLVRHNKLILLNLKGCTSLTTLPGEIFMKSLKTLVLSGCLKLRKFPHVGGSMECLQEL 304 (830)
Q Consensus 225 ~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L 304 (830)
.++|++|++++|. +..+|.. .++|++|++++ +.++.+|.. .++|++|++++|.+.. +| .++.+++|++|
T Consensus 90 --~~~L~~L~l~~n~-l~~lp~~---~~~L~~L~l~~-n~l~~l~~~--~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L 158 (454)
T 1jl5_A 90 --PPHLESLVASCNS-LTELPEL---PQSLKSLLVDN-NNLKALSDL--PPLLEYLGVSNNQLEK-LP-ELQNSSFLKII 158 (454)
T ss_dssp --CTTCSEEECCSSC-CSSCCCC---CTTCCEEECCS-SCCSCCCSC--CTTCCEEECCSSCCSS-CC-CCTTCTTCCEE
T ss_pred --cCCCCEEEccCCc-CCccccc---cCCCcEEECCC-CccCcccCC--CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEE
Confidence 4789999999864 4457653 37899999998 566666642 3789999999987765 66 58999999999
Q ss_pred ecccccccccccchhcccCCcEEeccCCCCCCCCccccccCccCcEEeecCCCCCCcCCcccCCCCCcEEEecCCccccc
Q 044302 305 FLDETDIKEMPLSIEHLSGLILLTLKYCKNLSSLPVTISSLKCLRTLKLSGCSKLKKFPQIVGMEGLSELYLDGTSITEV 384 (830)
Q Consensus 305 ~L~~~~i~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l 384 (830)
++++|.++.+|..+ .+|++|++++|.... +| .++.+++|+.|++++|.... +|.. .++|+.|++++|.+..+
T Consensus 159 ~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~--~~~L~~L~l~~n~l~~l 230 (454)
T 1jl5_A 159 DVDNNSLKKLPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL--PLSLESIVAGNNILEEL 230 (454)
T ss_dssp ECCSSCCSCCCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC--CTTCCEEECCSSCCSSC
T ss_pred ECCCCcCcccCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC--cCcccEEECcCCcCCcc
Confidence 99999999888654 589999999987665 55 68999999999999987654 4443 25899999999999988
Q ss_pred CcccCCCCCccEEecCCccCcccccccccCCCCCCEEeccCCCCCCccCcccCCCCCccEEecCCCcccCCCcccccCCC
Q 044302 385 PSSIELLPGIELLNLNDCKNLVRLPRSINGLKALKTLSLSGCCKLENVPDTLGQVESLEELDISGTATRRPPCSIFHMKN 464 (830)
Q Consensus 385 ~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~n~i~~l~~~l~~l~~ 464 (830)
|. +..+++|+.|++++|.... +|. .+++|+.|++++|.... +|.. +++|++|++++|.+..+|.. .++
T Consensus 231 p~-~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~~---~~~ 298 (454)
T 1jl5_A 231 PE-LQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSEL---PPN 298 (454)
T ss_dssp CC-CTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESCC---CTT
T ss_pred cc-cCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcccCc---CCc
Confidence 85 8899999999999987654 444 24889999999987654 5543 47899999999998876532 378
Q ss_pred CcEEEcCCCCCCCCCCccccCCCCCCC-CccCeecCCCCCCCCCccccccCCCCCCCEEeCCCCCCcccCcccCCCCccC
Q 044302 465 LKTLSFSGCNGPPSTASSLMLPSLSGL-CSLTKLDLSDCGLGEGAILSDIGNLHSLKALYLSENNFVTLPASISGLFNLE 543 (830)
Q Consensus 465 L~~L~L~~~~~~~~~~~~~~l~~l~~l-~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~ 543 (830)
|++|++++|+... +..+ ++|++|++++|.+.. +|.. +++|+.|++++|.++.+|. .+++|+
T Consensus 299 L~~L~l~~N~l~~----------i~~~~~~L~~L~Ls~N~l~~--lp~~---~~~L~~L~L~~N~l~~lp~---~l~~L~ 360 (454)
T 1jl5_A 299 LYYLNASSNEIRS----------LCDLPPSLEELNVSNNKLIE--LPAL---PPRLERLIASFNHLAEVPE---LPQNLK 360 (454)
T ss_dssp CCEEECCSSCCSE----------ECCCCTTCCEEECCSSCCSC--CCCC---CTTCCEEECCSSCCSCCCC---CCTTCC
T ss_pred CCEEECcCCcCCc----------ccCCcCcCCEEECCCCcccc--cccc---CCcCCEEECCCCccccccc---hhhhcc
Confidence 9999999987542 2223 589999999999873 5543 5899999999999999987 578999
Q ss_pred EeeccccccccccCCCCCCcceeec
Q 044302 544 YLKLEDCKRLQSLPQLPPNVHNVRL 568 (830)
Q Consensus 544 ~L~L~~c~~l~~lp~lp~sL~~L~i 568 (830)
+|++++| .+..+|.+|.++..|..
T Consensus 361 ~L~L~~N-~l~~l~~ip~~l~~L~~ 384 (454)
T 1jl5_A 361 QLHVEYN-PLREFPDIPESVEDLRM 384 (454)
T ss_dssp EEECCSS-CCSSCCCCCTTCCEEEC
T ss_pred EEECCCC-CCCcCCCChHHHHhhhh
Confidence 9999998 46777888888877753
No 30
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=1.3e-29 Score=299.22 Aligned_cols=429 Identities=20% Similarity=0.197 Sum_probs=314.9
Q ss_pred ccEEEEEeeccCCCccccccChHhhhCCCCCceEEEcCcccC----CCccccccCcceEEEecCCCCCCCCC-C-CCCCc
Q 044302 111 EVVEGMIIDDHFFPENEMHLSAKAFSLMTNLRLLKIGNVQLP----KGLEYLSNKLRLLVWHQYPLKSLPSN-L-QLDKI 184 (830)
Q Consensus 111 ~~v~~i~l~~~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~l~----~~~~~l~~~Lr~L~l~~~~l~~lp~~-~-~l~~L 184 (830)
..++.+.+... . ...+++.+|.++++|++|++++|+|. +.|..++ +|++|+|++|+++.+|.. | .+.+|
T Consensus 52 ~~~~~LdLs~N-~---i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~-~L~~L~Ls~N~l~~l~~~~f~~L~~L 126 (635)
T 4g8a_A 52 FSTKNLDLSFN-P---LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS-HLSTLILTGNPIQSLALGAFSGLSSL 126 (635)
T ss_dssp TTCCEEECTTS-C---CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT-TCCEEECTTCCCCEECGGGGTTCTTC
T ss_pred cCCCEEEeeCC-C---CCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCC-CCCEEEccCCcCCCCCHHHhcCCCCC
Confidence 45777777665 3 45678889999999999999999874 3466675 899999999999999875 4 89999
Q ss_pred eEEEccCCChhhccc-CCCCCCcccEEEccCCCCCC-CCC-CCCCCCceeEEeeeCCcccccccccccCCCCc----cEE
Q 044302 185 VEFEMCYSRIEELWK-GIKPLNTLKVMKLSHSENLI-KTP-NFIEVPNLEVLDLEGCTRLREIHSSLVRHNKL----ILL 257 (830)
Q Consensus 185 ~~L~L~~n~i~~l~~-~~~~l~~L~~L~L~~~~~~~-~~~-~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L----~~L 257 (830)
++|+|++|+++.++. .++.+++|++|+|++|.... ..| .+..+++|++|++++|......+..+..+.++ ..+
T Consensus 127 ~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~ 206 (635)
T 4g8a_A 127 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 206 (635)
T ss_dssp CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEE
T ss_pred CEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhh
Confidence 999999999999975 58999999999999997543 233 47889999999999976555555555544333 356
Q ss_pred ecCCCCCCccCCcccc-cCcccEEeccCcccc------------------------------------------------
Q 044302 258 NLKGCTSLTTLPGEIF-MKSLKTLVLSGCLKL------------------------------------------------ 288 (830)
Q Consensus 258 ~L~~c~~l~~lp~~~~-l~~L~~L~L~~~~~~------------------------------------------------ 288 (830)
+++. +.+..++...+ ...++.+++.++...
T Consensus 207 ~ls~-n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~ 285 (635)
T 4g8a_A 207 DLSL-NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 285 (635)
T ss_dssp ECTT-CCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEE
T ss_pred hccc-CcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhh
Confidence 6665 44444443332 333333333332110
Q ss_pred ----------cccCCCCCccccceEeecccccccccccchhcccCCcEEeccCCCCCCC-------------------Cc
Q 044302 289 ----------RKFPHVGGSMECLQELFLDETDIKEMPLSIEHLSGLILLTLKYCKNLSS-------------------LP 339 (830)
Q Consensus 289 ----------~~~~~~~~~l~~L~~L~L~~~~i~~l~~~l~~l~~L~~L~L~~~~~~~~-------------------~~ 339 (830)
......+..+.+++.+.+..+.+..++ .+.....|+.|++.+|..... .+
T Consensus 286 l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~ 364 (635)
T 4g8a_A 286 FRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK-DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA 364 (635)
T ss_dssp EEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG-GGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCB
T ss_pred hhhhhhcccccchhhhhhhhccccccccccccccccc-ccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCC
Confidence 000111122223333333333333222 123334555555555432211 11
Q ss_pred cccccCccCcEEeecCCCCCCc--CC-cccCCCCCcEEEecCCcccccCcccCCCCCccEEecCCccCccccc-ccccCC
Q 044302 340 VTISSLKCLRTLKLSGCSKLKK--FP-QIVGMEGLSELYLDGTSITEVPSSIELLPGIELLNLNDCKNLVRLP-RSINGL 415 (830)
Q Consensus 340 ~~l~~l~~L~~L~L~~~~~~~~--~~-~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~l~-~~~~~l 415 (830)
.....+++|+.|++++|..... .+ ....+.+|+.|++..+.+..++..+..+++|+.+++..+......+ ..+..+
T Consensus 365 ~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l 444 (635)
T 4g8a_A 365 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 444 (635)
T ss_dssp CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTC
T ss_pred cccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccc
Confidence 2334688999999998876432 22 2446889999999999999999899999999999999888776654 557889
Q ss_pred CCCCEEeccCCCCCCccCcccCCCCCccEEecCCCccc--CCCcccccCCCCcEEEcCCCCCCCCCCccccCCCCCCCCc
Q 044302 416 KALKTLSLSGCCKLENVPDTLGQVESLEELDISGTATR--RPPCSIFHMKNLKTLSFSGCNGPPSTASSLMLPSLSGLCS 493 (830)
Q Consensus 416 ~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~n~i~--~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~l~~ 493 (830)
++++.++++.|......+..+..+++|+.|++++|.+. ..|..+..+++|++|+|++|++... ....|.++++
T Consensus 445 ~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l-----~~~~f~~l~~ 519 (635)
T 4g8a_A 445 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL-----SPTAFNSLSS 519 (635)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE-----CTTTTTTCTT
T ss_pred cccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCc-----ChHHHcCCCC
Confidence 99999999999999888999999999999999999754 4677888999999999999986532 2234889999
Q ss_pred cCeecCCCCCCCCCccccccCCCCCCCEEeCCCCCCcccC-cccCCC-CccCEeecccccc
Q 044302 494 LTKLDLSDCGLGEGAILSDIGNLHSLKALYLSENNFVTLP-ASISGL-FNLEYLKLEDCKR 552 (830)
Q Consensus 494 L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp-~~l~~L-~~L~~L~L~~c~~ 552 (830)
|++|+|++|+++ ...+..+.++++|+.|+|++|+++.++ ..+..+ ++|++|+|++||.
T Consensus 520 L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~ 579 (635)
T 4g8a_A 520 LQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 579 (635)
T ss_dssp CCEEECTTSCCC-BCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCB
T ss_pred CCEEECCCCcCC-CCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCC
Confidence 999999999997 566777999999999999999999775 567777 6899999999973
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=6.5e-29 Score=279.30 Aligned_cols=353 Identities=18% Similarity=0.170 Sum_probs=234.6
Q ss_pred hhhCCCCCceEEEcCcccCC--CccccccCcceEEEecCCCCCCCCCCCCCCceEEEccCCChhhcccCCCCCCcccEEE
Q 044302 134 AFSLMTNLRLLKIGNVQLPK--GLEYLSNKLRLLVWHQYPLKSLPSNLQLDKIVEFEMCYSRIEELWKGIKPLNTLKVMK 211 (830)
Q Consensus 134 ~f~~l~~Lr~L~l~~~~l~~--~~~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~ 211 (830)
.+..+++|+.|++++|.+.+ ++..++ +|++|++++|.++.+| ...+++|++|++++|.++.++ ++.+++|++|+
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~~l~~l~-~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMTGIEKLT-GLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLN 112 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCTTGGGCT-TCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEE
T ss_pred ChhHcCCCCEEEccCCCcccChhhcccC-CCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee--cCCCCcCCEEE
Confidence 56678889999998888764 344444 7888888888888876 237788888888888888774 77788888888
Q ss_pred ccCCCCCCCCCCCCCCCceeEEeeeCCcccccccccccCCCCccEEecCCCCCCccCCcccccCcccEEeccCccccccc
Q 044302 212 LSHSENLIKTPNFIEVPNLEVLDLEGCTRLREIHSSLVRHNKLILLNLKGCTSLTTLPGEIFMKSLKTLVLSGCLKLRKF 291 (830)
Q Consensus 212 L~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~~~~~~~~ 291 (830)
+++|.... ++ +..+++|++|++++|. +..+ .++.+++|++|++++|..+..++ ...+++|++|++++|.+.. +
T Consensus 113 L~~N~l~~-l~-~~~l~~L~~L~l~~N~-l~~l--~l~~l~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~ls~n~l~~-l 185 (457)
T 3bz5_A 113 CDTNKLTK-LD-VSQNPLLTYLNCARNT-LTEI--DVSHNTQLTELDCHLNKKITKLD-VTPQTQLTTLDCSFNKITE-L 185 (457)
T ss_dssp CCSSCCSC-CC-CTTCTTCCEEECTTSC-CSCC--CCTTCTTCCEEECTTCSCCCCCC-CTTCTTCCEEECCSSCCCC-C
T ss_pred CCCCcCCe-ec-CCCCCcCCEEECCCCc-ccee--ccccCCcCCEEECCCCCcccccc-cccCCcCCEEECCCCccce-e
Confidence 88886433 43 7788888888888754 3334 36777888888888766666652 1226777777777765544 3
Q ss_pred CCCCCccccceEeecccccccccccchhcccCCcEEeccCCCCCCCCccccccCccCcEEeecCCCCCCcCCcccCCCCC
Q 044302 292 PHVGGSMECLQELFLDETDIKEMPLSIEHLSGLILLTLKYCKNLSSLPVTISSLKCLRTLKLSGCSKLKKFPQIVGMEGL 371 (830)
Q Consensus 292 ~~~~~~l~~L~~L~L~~~~i~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~L 371 (830)
| ++.+++|+.|++++|.++.++ +..+++|+.|++++|.... +| +..+++|+.|++++|..... + ...+++|
T Consensus 186 ~--l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~-~-~~~l~~L 256 (457)
T 3bz5_A 186 D--VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTEL-D-VSTLSKL 256 (457)
T ss_dssp C--CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C-CTTCTTC
T ss_pred c--cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCc-C-HHHCCCC
Confidence 3 566677777777777777663 5666677777777666554 33 56666666666666654442 2 3345566
Q ss_pred cEEEecCCcccccCcccCCCCCccEEecCCccCcccccccccCCCCCCEEeccCCCCCCccCcccCCCCCccEEecCCCc
Q 044302 372 SELYLDGTSITEVPSSIELLPGIELLNLNDCKNLVRLPRSINGLKALKTLSLSGCCKLENVPDTLGQVESLEELDISGTA 451 (830)
Q Consensus 372 ~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~n~ 451 (830)
+.|+++++ +|+.|++++|.....+| ++.+++|+.|++++|..++.+|. ...+|+.|++++
T Consensus 257 ~~L~l~~n-------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~-- 316 (457)
T 3bz5_A 257 TTLHCIQT-------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQ-- 316 (457)
T ss_dssp CEEECTTC-------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTT--
T ss_pred CEEeccCC-------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEechhh--
Confidence 66665543 34555666666666555 35677777777777776666653 234444444443
Q ss_pred ccCCCcccccCCCCcEEEcCCCCCCCCCCccccCCCCCCCCccCeecCCCCCCCCCccccccCCCCCCCEEeCCCCCCcc
Q 044302 452 TRRPPCSIFHMKNLKTLSFSGCNGPPSTASSLMLPSLSGLCSLTKLDLSDCGLGEGAILSDIGNLHSLKALYLSENNFVT 531 (830)
Q Consensus 452 i~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~ 531 (830)
+++|++|++++|+... + .++.+++|+.|++++|++.+ +++|..|++++|.+..
T Consensus 317 ----------~~~L~~L~L~~N~l~~-------l-~l~~l~~L~~L~l~~N~l~~---------l~~L~~L~l~~n~l~g 369 (457)
T 3bz5_A 317 ----------NPKLVYLYLNNTELTE-------L-DVSHNTKLKSLSCVNAHIQD---------FSSVGKIPALNNNFEA 369 (457)
T ss_dssp ----------CTTCCEEECTTCCCSC-------C-CCTTCTTCSEEECCSSCCCB---------CTTGGGSSGGGTSEEE
T ss_pred ----------cccCCEEECCCCcccc-------c-ccccCCcCcEEECCCCCCCC---------ccccccccccCCcEEe
Confidence 3677888888777543 1 26677788888888887762 3556666777777664
Q ss_pred cCcccCCCCccCEeeccccccccccC
Q 044302 532 LPASISGLFNLEYLKLEDCKRLQSLP 557 (830)
Q Consensus 532 lp~~l~~L~~L~~L~L~~c~~l~~lp 557 (830)
.+ .+..|+.+++++|..-..+|
T Consensus 370 ~~----~~~~l~~l~l~~N~l~g~ip 391 (457)
T 3bz5_A 370 EG----QTITMPKETLTNNSLTIAVS 391 (457)
T ss_dssp EE----EEEECCCBCCBTTBEEEECC
T ss_pred cc----eeeecCccccccCcEEEEcC
Confidence 43 45567788888886555554
No 32
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=1.6e-28 Score=267.19 Aligned_cols=298 Identities=17% Similarity=0.205 Sum_probs=140.4
Q ss_pred cceEEEecCCCCCCCCCCCCCCceEEEccCCChhhcccCCCCCCcccEEEccCCCCCCCCCCCCCCCceeEEeeeCCccc
Q 044302 162 LRLLVWHQYPLKSLPSNLQLDKIVEFEMCYSRIEELWKGIKPLNTLKVMKLSHSENLIKTPNFIEVPNLEVLDLEGCTRL 241 (830)
Q Consensus 162 Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~l 241 (830)
|+.|+++++.+..+|....+++|++|++++|.++.++. +..+++|++|++++|. ...++.+..+++|++|++++|. +
T Consensus 46 L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~-i~~~~~~~~l~~L~~L~l~~n~-i 122 (347)
T 4fmz_A 46 ITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNK-ITDISALQNLTNLRELYLNEDN-I 122 (347)
T ss_dssp CSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGGGTTCTTCSEEECTTSC-C
T ss_pred ccEEEEeCCccccchhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCc-ccCchHHcCCCcCCEEECcCCc-c
Confidence 33333344444444332244555555555555555443 5555555555555553 2233445555555555555533 2
Q ss_pred ccccccccCCCCccEEecCCCCCCccCCcccccCcccEEeccCcccccccCCCCCccccceEeecccccccccccchhcc
Q 044302 242 REIHSSLVRHNKLILLNLKGCTSLTTLPGEIFMKSLKTLVLSGCLKLRKFPHVGGSMECLQELFLDETDIKEMPLSIEHL 321 (830)
Q Consensus 242 ~~~~~~l~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~l~~l 321 (830)
..++. +..+++|++|++++|..+..++....+++|++|++++|......+ ++.+++|++|++++|.+..++. +..+
T Consensus 123 ~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l 198 (347)
T 4fmz_A 123 SDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP-LASL 198 (347)
T ss_dssp CCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG-GGGC
T ss_pred cCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc-ccCC
Confidence 23332 555555555555555444444432225555555555554333222 4455555666666655555544 5555
Q ss_pred cCCcEEeccCCCCCCCCccccccCccCcEEeecCCCCCCcCCcccCCCCCcEEEecCCcccccCcccCCCCCccEEecCC
Q 044302 322 SGLILLTLKYCKNLSSLPVTISSLKCLRTLKLSGCSKLKKFPQIVGMEGLSELYLDGTSITEVPSSIELLPGIELLNLND 401 (830)
Q Consensus 322 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~ 401 (830)
++|+.|++++|......+ +..+++|++|++++|..... +.+..+++|+.|++++|.++.++ .+..+++|+.|++++
T Consensus 199 ~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~ 274 (347)
T 4fmz_A 199 TSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDL-SPLANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGS 274 (347)
T ss_dssp TTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCS
T ss_pred CccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCC-cchhcCCCCCEEECCCCccCCCh-hHhcCCCcCEEEccC
Confidence 555566555554443322 44555555555555543322 22444555555555555554442 344445555555555
Q ss_pred ccCcccccccccCCCCCCEEeccCCCCCCccCcccCCCCCccEEecCCCcccCCCcccccCCCCcEEEcCCC
Q 044302 402 CKNLVRLPRSINGLKALKTLSLSGCCKLENVPDTLGQVESLEELDISGTATRRPPCSIFHMKNLKTLSFSGC 473 (830)
Q Consensus 402 ~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~n~i~~l~~~l~~l~~L~~L~L~~~ 473 (830)
|..... ..+..+++|+.|++++|......+..++.+++|++|++++|.+..++. +..+++|++|++++|
T Consensus 275 n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 275 NQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQ 343 (347)
T ss_dssp SCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC
T ss_pred CccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhh
Confidence 433322 223444444444444444444444444444444444444444443332 333333333333333
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=5.6e-28 Score=262.84 Aligned_cols=306 Identities=17% Similarity=0.219 Sum_probs=259.0
Q ss_pred hhhCCCCCceEEEcCcccCC--CccccccCcceEEEecCCCCCCCCCCCCCCceEEEccCCChhhcccCCCCCCcccEEE
Q 044302 134 AFSLMTNLRLLKIGNVQLPK--GLEYLSNKLRLLVWHQYPLKSLPSNLQLDKIVEFEMCYSRIEELWKGIKPLNTLKVMK 211 (830)
Q Consensus 134 ~f~~l~~Lr~L~l~~~~l~~--~~~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~ 211 (830)
.+..+++|+.|+++++.+.. ++..++ +|++|++++|.++.+|....+++|++|++++|.++.++ .+..+++|++|+
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~~~~~~~~~-~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~ 116 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVASIQGIEYLT-NLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELY 116 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCCCTTGGGCT-TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEE
T ss_pred cchhcccccEEEEeCCccccchhhhhcC-CccEEEccCCccccchhhhcCCcCCEEEccCCcccCch-HHcCCCcCCEEE
Confidence 45678899999999988753 355554 89999999999999988448999999999999999886 688999999999
Q ss_pred ccCCCCCCCCCCCCCCCceeEEeeeCCcccccccccccCCCCccEEecCCCCCCccCCcccccCcccEEeccCccccccc
Q 044302 212 LSHSENLIKTPNFIEVPNLEVLDLEGCTRLREIHSSLVRHNKLILLNLKGCTSLTTLPGEIFMKSLKTLVLSGCLKLRKF 291 (830)
Q Consensus 212 L~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~~~~~~~~ 291 (830)
+++|.. ...+.+..+++|++|++++|.....++. +..+++|++|++++| .+..++....+++|++|++++|.+....
T Consensus 117 l~~n~i-~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 193 (347)
T 4fmz_A 117 LNEDNI-SDISPLANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTES-KVKDVTPIANLTDLYSLSLNYNQIEDIS 193 (347)
T ss_dssp CTTSCC-CCCGGGTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECTTSCCCCCG
T ss_pred CcCCcc-cCchhhccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCC-CcCCchhhccCCCCCEEEccCCcccccc
Confidence 999874 4455588999999999999877666554 889999999999994 5666666344999999999998766543
Q ss_pred CCCCCccccceEeecccccccccccchhcccCCcEEeccCCCCCCCCccccccCccCcEEeecCCCCCCcCCcccCCCCC
Q 044302 292 PHVGGSMECLQELFLDETDIKEMPLSIEHLSGLILLTLKYCKNLSSLPVTISSLKCLRTLKLSGCSKLKKFPQIVGMEGL 371 (830)
Q Consensus 292 ~~~~~~l~~L~~L~L~~~~i~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~L 371 (830)
+ +..+++|+.|++++|.+..++. +..+++|+.|++++|......+ +..+++|++|++++|.... ++.+..+++|
T Consensus 194 ~--~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L 267 (347)
T 4fmz_A 194 P--LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-INAVKDLTKL 267 (347)
T ss_dssp G--GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CGGGTTCTTC
T ss_pred c--ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-ChhHhcCCCc
Confidence 3 7889999999999999998876 8899999999999998766544 8899999999999986554 5778889999
Q ss_pred cEEEecCCcccccCcccCCCCCccEEecCCccCcccccccccCCCCCCEEeccCCCCCCccCcccCCCCCccEEecCCCc
Q 044302 372 SELYLDGTSITEVPSSIELLPGIELLNLNDCKNLVRLPRSINGLKALKTLSLSGCCKLENVPDTLGQVESLEELDISGTA 451 (830)
Q Consensus 372 ~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~n~ 451 (830)
+.|++++|.++.++ .+..+++|+.|++++|......+..+..+++|++|++++|......| +..+++|++|++++|.
T Consensus 268 ~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 268 KMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQV 344 (347)
T ss_dssp CEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC-
T ss_pred CEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhc
Confidence 99999999999884 58899999999999999988888999999999999999999777665 8889999999999998
Q ss_pred cc
Q 044302 452 TR 453 (830)
Q Consensus 452 i~ 453 (830)
++
T Consensus 345 i~ 346 (347)
T 4fmz_A 345 IK 346 (347)
T ss_dssp --
T ss_pred cc
Confidence 75
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=3.9e-28 Score=268.57 Aligned_cols=304 Identities=19% Similarity=0.141 Sum_probs=175.6
Q ss_pred CCCCceEEEccCCChhhcccC-CCCCCcccEEEccCCCCCCCCC-CCCCCCceeEEeeeCCcccccccccccCCCCccEE
Q 044302 180 QLDKIVEFEMCYSRIEELWKG-IKPLNTLKVMKLSHSENLIKTP-NFIEVPNLEVLDLEGCTRLREIHSSLVRHNKLILL 257 (830)
Q Consensus 180 ~l~~L~~L~L~~n~i~~l~~~-~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L 257 (830)
.+.++++|+++++.++.+|.. +..+++|++|+|++|......+ .|..+++|++|++++|......|..++.+++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 344555555555555555543 3455556666666554333222 45566666666666654333334455666666666
Q ss_pred ecCCCCCCccCCcccc--cCcccEEeccCcccccccCCCCCccccceEeecccccccccccchhcccCCcEEeccCCCCC
Q 044302 258 NLKGCTSLTTLPGEIF--MKSLKTLVLSGCLKLRKFPHVGGSMECLQELFLDETDIKEMPLSIEHLSGLILLTLKYCKNL 335 (830)
Q Consensus 258 ~L~~c~~l~~lp~~~~--l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~l~~l~~L~~L~L~~~~~~ 335 (830)
++++ +.++.+|..++ +++|++|++++|.+....+..++.+++|+.|++++|.++.++ +..+++|+.|++++|...
T Consensus 123 ~L~~-n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 123 VLER-NDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp ECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCS
T ss_pred ECCC-CccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeeccccccc
Confidence 6666 35555665442 666666666666665555566667777777777777666553 344455555555544321
Q ss_pred CCCccccccCccCcEEeecCCCCCCcCCcccCCCCCcEEEecCCcccccCcccCCCCCccEEecCCccCcccccccccCC
Q 044302 336 SSLPVTISSLKCLRTLKLSGCSKLKKFPQIVGMEGLSELYLDGTSITEVPSSIELLPGIELLNLNDCKNLVRLPRSINGL 415 (830)
Q Consensus 336 ~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l 415 (830)
.+...++|+.|++++|.+..+|.. .+++|+.|++++|..... ..+..+
T Consensus 200 ----------------------------~~~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~~~--~~l~~l 247 (390)
T 3o6n_A 200 ----------------------------TLAIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTDT--AWLLNY 247 (390)
T ss_dssp ----------------------------EEECCSSCSEEECCSSCCCEEECC--CCSSCCEEECCSSCCCCC--GGGGGC
T ss_pred ----------------------------ccCCCCcceEEECCCCeeeecccc--ccccccEEECCCCCCccc--HHHcCC
Confidence 112234566666666666666443 245677777777665442 345666
Q ss_pred CCCCEEeccCCCCCCccCcccCCCCCccEEecCCCcccCCCcccccCCCCcEEEcCCCCCCCCCCccccCCCCCCCCccC
Q 044302 416 KALKTLSLSGCCKLENVPDTLGQVESLEELDISGTATRRPPCSIFHMKNLKTLSFSGCNGPPSTASSLMLPSLSGLCSLT 495 (830)
Q Consensus 416 ~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~n~i~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~l~~L~ 495 (830)
++|++|++++|......|..+..+++|++|++++|.+..+|..+..+ ++|+
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l-----------------------------~~L~ 298 (390)
T 3o6n_A 248 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPI-----------------------------PTLK 298 (390)
T ss_dssp TTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCC-----------------------------TTCC
T ss_pred CCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCC-----------------------------CCCC
Confidence 66666666666666555666666666666666666665554444344 4444
Q ss_pred eecCCCCCCCCCccccccCCCCCCCEEeCCCCCCcccCcccCCCCccCEeeccccc
Q 044302 496 KLDLSDCGLGEGAILSDIGNLHSLKALYLSENNFVTLPASISGLFNLEYLKLEDCK 551 (830)
Q Consensus 496 ~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~c~ 551 (830)
+|++++|.+. .++..+..+++|+.|++++|.++.+| +..+++|++|+|++|+
T Consensus 299 ~L~L~~n~l~--~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 299 VLDLSHNHLL--HVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHND 350 (390)
T ss_dssp EEECCSSCCC--CCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSC
T ss_pred EEECCCCcce--ecCccccccCcCCEEECCCCccceeC--chhhccCCEEEcCCCC
Confidence 5555555443 24555566667777777777776665 5566677777777764
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.96 E-value=8.9e-28 Score=273.20 Aligned_cols=309 Identities=19% Similarity=0.224 Sum_probs=209.3
Q ss_pred ceEEEecCCCCCCCCCCCCCCceEEEccCCChhhcc-cCCCCCCcccEEEccCCCCCCCC-CCCCCCCceeEEeeeCCcc
Q 044302 163 RLLVWHQYPLKSLPSNLQLDKIVEFEMCYSRIEELW-KGIKPLNTLKVMKLSHSENLIKT-PNFIEVPNLEVLDLEGCTR 240 (830)
Q Consensus 163 r~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~-~~~~~l~~L~~L~L~~~~~~~~~-~~~~~l~~L~~L~L~~~~~ 240 (830)
+.++.++..++.+|..+ ..++++|+|++|.|+.++ ..+..+++|++|+|++|...... ..|.++++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~- 91 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGI-PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR- 91 (477)
T ss_dssp TEEECCSCCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-
T ss_pred CEEEeCCCCcCcCCCCC-CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-
Confidence 34555555555666544 345666666666666653 45666666666666666543332 346666666666666643
Q ss_pred cccccc-cccCCCCccEEecCCCCCCccC-Ccccc-cCcccEEeccCcccccccCCCCCccccceEeeccccccccccc-
Q 044302 241 LREIHS-SLVRHNKLILLNLKGCTSLTTL-PGEIF-MKSLKTLVLSGCLKLRKFPHVGGSMECLQELFLDETDIKEMPL- 316 (830)
Q Consensus 241 l~~~~~-~l~~l~~L~~L~L~~c~~l~~l-p~~~~-l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~- 316 (830)
+..+|. .+.++++|++|++++| .+..+ |..+. +++|++|++++|.+....+..+..+++|++|++++|.++.++.
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 170 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISEN-KIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE 170 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred CCccCcccccCCCCCCEEECCCC-ccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence 333333 3566666666666663 33333 33333 6677777777776666667777888888888888888887775
Q ss_pred chhcccCCcEEeccCCCCCCCCccccccCccCcEEeecCCCCCCcCCc-ccCCCCCcEEEecCCcccccCc-ccCCCCCc
Q 044302 317 SIEHLSGLILLTLKYCKNLSSLPVTISSLKCLRTLKLSGCSKLKKFPQ-IVGMEGLSELYLDGTSITEVPS-SIELLPGI 394 (830)
Q Consensus 317 ~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~L~~~~i~~l~~-~~~~l~~L 394 (830)
.+..+++|+.|++++|......+..+..+++|+.|++++|.....++. .....+|+.|++++|.++.+|. .+..+++|
T Consensus 171 ~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 250 (477)
T 2id5_A 171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL 250 (477)
T ss_dssp HHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTC
T ss_pred HhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcccc
Confidence 577888888888888887777777788888899999988887776654 3345588888888888888774 46778888
Q ss_pred cEEecCCccCcccccccccCCCCCCEEeccCCCCCCccCcccCCCCCccEEecCCCcccCCCcc-cccCCCCcEEEcCCC
Q 044302 395 ELLNLNDCKNLVRLPRSINGLKALKTLSLSGCCKLENVPDTLGQVESLEELDISGTATRRPPCS-IFHMKNLKTLSFSGC 473 (830)
Q Consensus 395 ~~L~L~~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~n~i~~l~~~-l~~l~~L~~L~L~~~ 473 (830)
+.|+|++|......+..+..+++|+.|++++|......|..+..+++|+.|+|++|.++.++.. +..+++|+.|++++|
T Consensus 251 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 251 RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN 330 (477)
T ss_dssp CEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSS
T ss_pred CeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCC
Confidence 8888888877666666677777788888877777776677777777777777777777766543 334555555555555
Q ss_pred C
Q 044302 474 N 474 (830)
Q Consensus 474 ~ 474 (830)
+
T Consensus 331 ~ 331 (477)
T 2id5_A 331 P 331 (477)
T ss_dssp C
T ss_pred C
Confidence 4
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.96 E-value=1.4e-27 Score=271.69 Aligned_cols=293 Identities=23% Similarity=0.218 Sum_probs=223.9
Q ss_pred CccEEecCCCCCCccCCc-ccc-cCcccEEeccCcccccccCCCCCccccceEeeccccccccccc-chhcccCCcEEec
Q 044302 253 KLILLNLKGCTSLTTLPG-EIF-MKSLKTLVLSGCLKLRKFPHVGGSMECLQELFLDETDIKEMPL-SIEHLSGLILLTL 329 (830)
Q Consensus 253 ~L~~L~L~~c~~l~~lp~-~~~-l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~-~l~~l~~L~~L~L 329 (830)
+++.|++++ +.++.++. .+. +++|++|+|++|.+....|..++++++|+.|++++|.+..+|. .+..+++|++|++
T Consensus 33 ~l~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 33 ETRLLDLGK-NRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TCSEEECCS-SCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCcEEECCC-CccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 445555554 33333332 222 5555555555555555556666677777777777777776665 3567777777777
Q ss_pred cCCCCCCCCccccccCccCcEEeecCCCCCCcCC-cccCCCCCcEEEecCCcccccCcc-cCCCCCccEEecCCccCccc
Q 044302 330 KYCKNLSSLPVTISSLKCLRTLKLSGCSKLKKFP-QIVGMEGLSELYLDGTSITEVPSS-IELLPGIELLNLNDCKNLVR 407 (830)
Q Consensus 330 ~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~L~~~~~l~~ 407 (830)
++|......+..+..+++|++|++++|......+ .+.++++|+.|++++|.++.++.. +..+++|+.|++++|.....
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~ 191 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI 191 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe
Confidence 7777766667777778888888888877655444 366778888888888888877754 78888999999998888777
Q ss_pred ccccccCCCCCCEEeccCCCCCCccCcccCCCCCccEEecCCCcccCCCc-ccccCCCCcEEEcCCCCCCCCCCccccCC
Q 044302 408 LPRSINGLKALKTLSLSGCCKLENVPDTLGQVESLEELDISGTATRRPPC-SIFHMKNLKTLSFSGCNGPPSTASSLMLP 486 (830)
Q Consensus 408 l~~~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~n~i~~l~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~l~ 486 (830)
.+..+..+++|+.|++++|.....++.......+|++|++++|.+..+|. .+..+++|+.|+|++|++... ...
T Consensus 192 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-----~~~ 266 (477)
T 2id5_A 192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTI-----EGS 266 (477)
T ss_dssp CTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEE-----CTT
T ss_pred ChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCcc-----Chh
Confidence 77788889999999999998888888777777799999999999998884 577899999999999985532 233
Q ss_pred CCCCCCccCeecCCCCCCCCCccccccCCCCCCCEEeCCCCCCcccCcc-cCCCCccCEeecccccc
Q 044302 487 SLSGLCSLTKLDLSDCGLGEGAILSDIGNLHSLKALYLSENNFVTLPAS-ISGLFNLEYLKLEDCKR 552 (830)
Q Consensus 487 ~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~-l~~L~~L~~L~L~~c~~ 552 (830)
.+..+++|++|+|++|.+. ...+..+..+++|+.|+|++|.++.+|.. +..+++|++|+|++|+.
T Consensus 267 ~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 267 MLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp SCTTCTTCCEEECCSSCCS-EECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred hccccccCCEEECCCCccc-eECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence 4788999999999999997 56678899999999999999999998864 58899999999999974
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.95 E-value=5.4e-27 Score=263.64 Aligned_cols=327 Identities=16% Similarity=0.134 Sum_probs=249.1
Q ss_pred ccccccCcceEEEecCCCCCCCCCCCCCCceEEEccCCChhhcccCCCCCCcccEEEccCCCCCCCCCCCCCCCceeEEe
Q 044302 155 LEYLSNKLRLLVWHQYPLKSLPSNLQLDKIVEFEMCYSRIEELWKGIKPLNTLKVMKLSHSENLIKTPNFIEVPNLEVLD 234 (830)
Q Consensus 155 ~~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~ 234 (830)
+..+ ++|++|++++|.++.+|....+++|++|++++|.++.+| ++.+++|++|++++|.... ++ +..+++|++|+
T Consensus 38 ~~~l-~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~-~~-~~~l~~L~~L~ 112 (457)
T 3bz5_A 38 EEQL-ATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTN-LD-VTPLTKLTYLN 112 (457)
T ss_dssp HHHH-TTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC-CTTCTTCCEEE
T ss_pred hhHc-CCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCce-ee-cCCCCcCCEEE
Confidence 3344 489999999999999985348999999999999999986 8899999999999997443 44 88999999999
Q ss_pred eeCCcccccccccccCCCCccEEecCCCCCCccCCcccccCcccEEeccCcccccccCCCCCccccceEeeccccccccc
Q 044302 235 LEGCTRLREIHSSLVRHNKLILLNLKGCTSLTTLPGEIFMKSLKTLVLSGCLKLRKFPHVGGSMECLQELFLDETDIKEM 314 (830)
Q Consensus 235 L~~~~~l~~~~~~l~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l 314 (830)
+++|. +..++ ++.+++|++|++++ +.++.++ ...+++|++|++++|.....+ .++.+++|+.|++++|.++.+
T Consensus 113 L~~N~-l~~l~--~~~l~~L~~L~l~~-N~l~~l~-l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l 185 (457)
T 3bz5_A 113 CDTNK-LTKLD--VSQNPLLTYLNCAR-NTLTEID-VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITEL 185 (457)
T ss_dssp CCSSC-CSCCC--CTTCTTCCEEECTT-SCCSCCC-CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCC
T ss_pred CCCCc-CCeec--CCCCCcCCEEECCC-Cccceec-cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcccee
Confidence 99974 44554 88999999999999 5666664 223899999999998766655 477889999999999999988
Q ss_pred ccchhcccCCcEEeccCCCCCCCCccccccCccCcEEeecCCCCCCcCCcccCCCCCcEEEecCCcccccCcccCCCCCc
Q 044302 315 PLSIEHLSGLILLTLKYCKNLSSLPVTISSLKCLRTLKLSGCSKLKKFPQIVGMEGLSELYLDGTSITEVPSSIELLPGI 394 (830)
Q Consensus 315 ~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L 394 (830)
| +..+++|+.|++++|..... .+..+++|+.|++++|.... +| +..+++|+.|++++|.++.+| +..+++|
T Consensus 186 ~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip-~~~l~~L~~L~l~~N~l~~~~--~~~l~~L 256 (457)
T 3bz5_A 186 D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID-VTPLTQLTYFDCSVNPLTELD--VSTLSKL 256 (457)
T ss_dssp C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC-CTTCTTCSEEECCSSCCSCCC--CTTCTTC
T ss_pred c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC-ccccCCCCEEEeeCCcCCCcC--HHHCCCC
Confidence 7 77888899999988876654 37778888888888887665 45 667788888888888888776 4567778
Q ss_pred cEEecCCccCcccccccccCCCCCCEEeccCCCCCCccCcccCCCCCccEEecCCCccc-CCCcccccCCCCcEEEcCCC
Q 044302 395 ELLNLNDCKNLVRLPRSINGLKALKTLSLSGCCKLENVPDTLGQVESLEELDISGTATR-RPPCSIFHMKNLKTLSFSGC 473 (830)
Q Consensus 395 ~~L~L~~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~n~i~-~l~~~l~~l~~L~~L~L~~~ 473 (830)
+.|+++++ +|+.|++++|.....+| ++.+++|+.|++++|... .+|. ..++|+.|++++
T Consensus 257 ~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~- 316 (457)
T 3bz5_A 257 TTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQ- 316 (457)
T ss_dssp CEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTT-
T ss_pred CEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEechhh-
Confidence 88877653 56777788887776665 456777888888777643 3332 234455444444
Q ss_pred CCCCCCCccccCCCCCCCCccCeecCCCCCCCCCccccccCCCCCCCEEeCCCCCCcccCcccCCCCccCEeecccc
Q 044302 474 NGPPSTASSLMLPSLSGLCSLTKLDLSDCGLGEGAILSDIGNLHSLKALYLSENNFVTLPASISGLFNLEYLKLEDC 550 (830)
Q Consensus 474 ~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~c 550 (830)
+++|++|++++|+++. + .+..+++|+.|++++|+++.+ +.|..|++++|
T Consensus 317 -----------------~~~L~~L~L~~N~l~~--l--~l~~l~~L~~L~l~~N~l~~l-------~~L~~L~l~~n 365 (457)
T 3bz5_A 317 -----------------NPKLVYLYLNNTELTE--L--DVSHNTKLKSLSCVNAHIQDF-------SSVGKIPALNN 365 (457)
T ss_dssp -----------------CTTCCEEECTTCCCSC--C--CCTTCTTCSEEECCSSCCCBC-------TTGGGSSGGGT
T ss_pred -----------------cccCCEEECCCCcccc--c--ccccCCcCcEEECCCCCCCCc-------cccccccccCC
Confidence 3578888888888863 3 377888888888888887764 34555556554
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=3.2e-27 Score=275.72 Aligned_cols=304 Identities=19% Similarity=0.145 Sum_probs=176.6
Q ss_pred CCCCceEEEccCCChhhcccC-CCCCCcccEEEccCCCCCCCCC-CCCCCCceeEEeeeCCcccccccccccCCCCccEE
Q 044302 180 QLDKIVEFEMCYSRIEELWKG-IKPLNTLKVMKLSHSENLIKTP-NFIEVPNLEVLDLEGCTRLREIHSSLVRHNKLILL 257 (830)
Q Consensus 180 ~l~~L~~L~L~~n~i~~l~~~-~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L 257 (830)
.+.+++.|+++++.+..+|.. +..+++|++|+|++|......+ .|..+++|++|+|++|......|..++++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 344555555555555555543 3455666666666655333332 45666666666666654433334445666666666
Q ss_pred ecCCCCCCccCCcccc--cCcccEEeccCcccccccCCCCCccccceEeecccccccccccchhcccCCcEEeccCCCCC
Q 044302 258 NLKGCTSLTTLPGEIF--MKSLKTLVLSGCLKLRKFPHVGGSMECLQELFLDETDIKEMPLSIEHLSGLILLTLKYCKNL 335 (830)
Q Consensus 258 ~L~~c~~l~~lp~~~~--l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~l~~l~~L~~L~L~~~~~~ 335 (830)
++++ +.++.+|..++ +++|++|++++|.+....|..++.+++|+.|++++|.+..++ +..+++|+.|++++|...
T Consensus 129 ~L~~-n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 129 VLER-NDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp ECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCS
T ss_pred EeeC-CCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCccc
Confidence 6666 34555655442 666666666666666666666677777777777777766554 344455555555544321
Q ss_pred CCCccccccCccCcEEeecCCCCCCcCCcccCCCCCcEEEecCCcccccCcccCCCCCccEEecCCccCcccccccccCC
Q 044302 336 SSLPVTISSLKCLRTLKLSGCSKLKKFPQIVGMEGLSELYLDGTSITEVPSSIELLPGIELLNLNDCKNLVRLPRSINGL 415 (830)
Q Consensus 336 ~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l 415 (830)
.+...++|+.|++++|.+..++..+ .++|+.|+|++|.... +..+..+
T Consensus 206 ----------------------------~l~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~--~~~l~~l 253 (597)
T 3oja_B 206 ----------------------------TLAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTD--TAWLLNY 253 (597)
T ss_dssp ----------------------------EEECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCC--CGGGGGC
T ss_pred ----------------------------cccCCchhheeeccCCccccccccc--CCCCCEEECCCCCCCC--ChhhccC
Confidence 1122345666666666666555432 2566777777665544 2455666
Q ss_pred CCCCEEeccCCCCCCccCcccCCCCCccEEecCCCcccCCCcccccCCCCcEEEcCCCCCCCCCCccccCCCCCCCCccC
Q 044302 416 KALKTLSLSGCCKLENVPDTLGQVESLEELDISGTATRRPPCSIFHMKNLKTLSFSGCNGPPSTASSLMLPSLSGLCSLT 495 (830)
Q Consensus 416 ~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~n~i~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~l~~L~ 495 (830)
++|+.|++++|......|..++.+++|+.|+|++|.+..+|..+..++ +|+
T Consensus 254 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~-----------------------------~L~ 304 (597)
T 3oja_B 254 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIP-----------------------------TLK 304 (597)
T ss_dssp TTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCT-----------------------------TCC
T ss_pred CCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCC-----------------------------CCc
Confidence 666666666666666666666666666666666666655554444444 444
Q ss_pred eecCCCCCCCCCccccccCCCCCCCEEeCCCCCCcccCcccCCCCccCEeeccccc
Q 044302 496 KLDLSDCGLGEGAILSDIGNLHSLKALYLSENNFVTLPASISGLFNLEYLKLEDCK 551 (830)
Q Consensus 496 ~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~c~ 551 (830)
.|+|++|.+. .+|..+..+++|+.|+|++|.+..+| +..+++|+.|+|++|+
T Consensus 305 ~L~Ls~N~l~--~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 305 VLDLSHNHLL--HVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHND 356 (597)
T ss_dssp EEECCSSCCC--CCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSC
T ss_pred EEECCCCCCC--ccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCCC
Confidence 4444444443 24555566666666666666666654 5556667777777665
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.95 E-value=1.2e-26 Score=256.59 Aligned_cols=299 Identities=17% Similarity=0.135 Sum_probs=176.3
Q ss_pred CcceEEEecCCCCCCCCCC--CCCCceEEEccCCChhhccc-CCCCCCcccEEEccCCCCCCCCCC-CCCCCceeEEeee
Q 044302 161 KLRLLVWHQYPLKSLPSNL--QLDKIVEFEMCYSRIEELWK-GIKPLNTLKVMKLSHSENLIKTPN-FIEVPNLEVLDLE 236 (830)
Q Consensus 161 ~Lr~L~l~~~~l~~lp~~~--~l~~L~~L~L~~n~i~~l~~-~~~~l~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~L~ 236 (830)
++++|+++++.++.+|..+ .+++|++|++++|.++.++. .+..+++|++|+|++|......+. +..+++|++|+++
T Consensus 46 ~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 125 (390)
T 3o6n_A 46 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 125 (390)
T ss_dssp CCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECC
Confidence 4555555555555555443 45555555555555555533 455555566666655553333332 5555666666665
Q ss_pred CCccccccccc-ccCCCCccEEecCCCCCCccCCcc-cc-cCcccEEeccCcccccccCCCCCccccceEeecccccccc
Q 044302 237 GCTRLREIHSS-LVRHNKLILLNLKGCTSLTTLPGE-IF-MKSLKTLVLSGCLKLRKFPHVGGSMECLQELFLDETDIKE 313 (830)
Q Consensus 237 ~~~~l~~~~~~-l~~l~~L~~L~L~~c~~l~~lp~~-~~-l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~ 313 (830)
+| .+..+|.. +.++++|++|++++| .+..++.. +. +++|++|++++|.+... .++.+++|+.|++++|.+..
T Consensus 126 ~n-~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~ 200 (390)
T 3o6n_A 126 RN-DLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST 200 (390)
T ss_dssp SS-CCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE
T ss_pred CC-ccCcCCHHHhcCCCCCcEEECCCC-ccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc
Confidence 54 23344433 355566666666552 33333332 22 56666666666554432 24455667777777776664
Q ss_pred cccchhcccCCcEEeccCCCCCCCCccccccCccCcEEeecCCCCCCcCCcccCCCCCcEEEecCCcccccCcccCCCCC
Q 044302 314 MPLSIEHLSGLILLTLKYCKNLSSLPVTISSLKCLRTLKLSGCSKLKKFPQIVGMEGLSELYLDGTSITEVPSSIELLPG 393 (830)
Q Consensus 314 l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~ 393 (830)
++ ..++|+.|++++|..... |. ...++|+.|++++|.++.. ..+..+++
T Consensus 201 ~~----~~~~L~~L~l~~n~l~~~-~~-------------------------~~~~~L~~L~l~~n~l~~~-~~l~~l~~ 249 (390)
T 3o6n_A 201 LA----IPIAVEELDASHNSINVV-RG-------------------------PVNVELTILKLQHNNLTDT-AWLLNYPG 249 (390)
T ss_dssp EE----CCSSCSEEECCSSCCCEE-EC-------------------------CCCSSCCEEECCSSCCCCC-GGGGGCTT
T ss_pred cC----CCCcceEEECCCCeeeec-cc-------------------------cccccccEEECCCCCCccc-HHHcCCCC
Confidence 43 223555566655543221 11 1124566666666666654 35667778
Q ss_pred ccEEecCCccCcccccccccCCCCCCEEeccCCCCCCccCcccCCCCCccEEecCCCcccCCCcccccCCCCcEEEcCCC
Q 044302 394 IELLNLNDCKNLVRLPRSINGLKALKTLSLSGCCKLENVPDTLGQVESLEELDISGTATRRPPCSIFHMKNLKTLSFSGC 473 (830)
Q Consensus 394 L~~L~L~~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~n~i~~l~~~l~~l~~L~~L~L~~~ 473 (830)
|+.|++++|......|..+..+++|++|++++|.... ++..+..+++|++|++++|.+..+|..+..+++|++|++++|
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N 328 (390)
T 3o6n_A 250 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHN 328 (390)
T ss_dssp CSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSS
T ss_pred ccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCC
Confidence 8888888887777777778888888888888876543 566667788999999999999888888888888888888887
Q ss_pred CCCCCCCccccCCCCCCCCccCeecCCCCCC
Q 044302 474 NGPPSTASSLMLPSLSGLCSLTKLDLSDCGL 504 (830)
Q Consensus 474 ~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l 504 (830)
++... .+..+++|+.|++++|++
T Consensus 329 ~i~~~--------~~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 329 SIVTL--------KLSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp CCCCC--------CCCTTCCCSEEECCSSCE
T ss_pred cccee--------CchhhccCCEEEcCCCCc
Confidence 74321 133444445555554444
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=2.1e-25 Score=260.34 Aligned_cols=302 Identities=17% Similarity=0.167 Sum_probs=192.0
Q ss_pred CCceeEEeeeCCccccccccc-ccCCCCccEEecCCCCCCccCCc-ccc-cCcccEEeccCcccccccCCCCCccccceE
Q 044302 227 VPNLEVLDLEGCTRLREIHSS-LVRHNKLILLNLKGCTSLTTLPG-EIF-MKSLKTLVLSGCLKLRKFPHVGGSMECLQE 303 (830)
Q Consensus 227 l~~L~~L~L~~~~~l~~~~~~-l~~l~~L~~L~L~~c~~l~~lp~-~~~-l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~ 303 (830)
+++++.|++++| .+..+|.. +..+++|++|++++| .+..++. .+. +++|++|+|++|.+....|..++.+++|+.
T Consensus 50 l~~l~~l~l~~~-~l~~lp~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 50 LNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GCCCSEEEESSC-EESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCceEEEeeCC-CCCCcCHHHHccCCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 456666777664 33444433 455666666666663 3444443 222 556666666665555555555555566666
Q ss_pred eecccccccccccc-hhcccCCcEEeccCCCCCCCCccccccCccCcEEeecCCCCCCcCCcccCCCCCcEEEecCCccc
Q 044302 304 LFLDETDIKEMPLS-IEHLSGLILLTLKYCKNLSSLPVTISSLKCLRTLKLSGCSKLKKFPQIVGMEGLSELYLDGTSIT 382 (830)
Q Consensus 304 L~L~~~~i~~l~~~-l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~i~ 382 (830)
|++++|.+..+|.. +..+++|+.|++++|......|..+..+ ++|+.|++++|.++
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-----------------------~~L~~L~L~~N~l~ 184 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT-----------------------TSLQNLQLSSNRLT 184 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTC-----------------------TTCCEEECTTSCCS
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcC-----------------------CcCcEEECcCCCCC
Confidence 66665555555543 2455555555555554444444444444 44555555555555
Q ss_pred ccCcccCCCCCccEEecCCccCcccccccccCCCCCCEEeccCCCCCCccCcccCCCCCccEEecCCCcccCCCcccccC
Q 044302 383 EVPSSIELLPGIELLNLNDCKNLVRLPRSINGLKALKTLSLSGCCKLENVPDTLGQVESLEELDISGTATRRPPCSIFHM 462 (830)
Q Consensus 383 ~l~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~n~i~~l~~~l~~l 462 (830)
.++ +..+++|+.|++++|.... +...++|+.|++++|......+.. .++|+.|++++|.+... ..+..+
T Consensus 185 ~~~--~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~-~~l~~l 253 (597)
T 3oja_B 185 HVD--LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT-AWLLNY 253 (597)
T ss_dssp BCC--GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC-GGGGGC
T ss_pred CcC--hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCCC-hhhccC
Confidence 443 3445556666666554322 223456677777766554332222 25788888888887764 567788
Q ss_pred CCCcEEEcCCCCCCCCCCccccCCCCCCCCccCeecCCCCCCCCCccccccCCCCCCCEEeCCCCCCcccCcccCCCCcc
Q 044302 463 KNLKTLSFSGCNGPPSTASSLMLPSLSGLCSLTKLDLSDCGLGEGAILSDIGNLHSLKALYLSENNFVTLPASISGLFNL 542 (830)
Q Consensus 463 ~~L~~L~L~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L 542 (830)
++|+.|+|++|.+... ....+..+++|+.|+|++|.++. ++..+..+++|+.|+|++|.+..+|..+..+++|
T Consensus 254 ~~L~~L~Ls~N~l~~~-----~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L 326 (597)
T 3oja_B 254 PGLVEVDLSYNELEKI-----MYHPFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRL 326 (597)
T ss_dssp TTCSEEECCSSCCCEE-----ESGGGTTCSSCCEEECTTSCCCE--EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTC
T ss_pred CCCCEEECCCCccCCC-----CHHHhcCccCCCEEECCCCCCCC--CCcccccCCCCcEEECCCCCCCccCcccccCCCC
Confidence 8888888888875432 23347888999999999999864 6777888999999999999999999999999999
Q ss_pred CEeeccccccccccC-CCCCCcceeeccCCc
Q 044302 543 EYLKLEDCKRLQSLP-QLPPNVHNVRLNGCA 572 (830)
Q Consensus 543 ~~L~L~~c~~l~~lp-~lp~sL~~L~i~~C~ 572 (830)
++|+|++|+ +..+| ...++|+.|++++++
T Consensus 327 ~~L~L~~N~-l~~~~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 327 ENLYLDHNS-IVTLKLSTHHTLKNLTLSHND 356 (597)
T ss_dssp SEEECCSSC-CCCCCCCTTCCCSEEECCSSC
T ss_pred CEEECCCCC-CCCcChhhcCCCCEEEeeCCC
Confidence 999999996 44444 234577777777765
No 41
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.94 E-value=6.8e-25 Score=236.62 Aligned_cols=244 Identities=19% Similarity=0.194 Sum_probs=160.8
Q ss_pred CcccEEEccCCCCCCCCCCCCCCCceeEEeeeCCcccccccccccCCCCccEEecCCCCCCccCCcccccCcccEEeccC
Q 044302 205 NTLKVMKLSHSENLIKTPNFIEVPNLEVLDLEGCTRLREIHSSLVRHNKLILLNLKGCTSLTTLPGEIFMKSLKTLVLSG 284 (830)
Q Consensus 205 ~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~ 284 (830)
.+|+.++++++.....+..+ .++|++|++++|......+..++++++|++|++++
T Consensus 31 c~l~~l~~~~~~l~~lp~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~----------------------- 85 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILIN----------------------- 85 (330)
T ss_dssp EETTEEECTTSCCCSCCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS-----------------------
T ss_pred CCCeEEEecCCCccccCccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCC-----------------------
Confidence 35666666665432222222 24556666665432222223455555555555554
Q ss_pred cccccccCCCCCccccceEeecccccccccccchhcccCCcEEeccCCCCCCCCccccccCccCcEEeecCCCCCC--cC
Q 044302 285 CLKLRKFPHVGGSMECLQELFLDETDIKEMPLSIEHLSGLILLTLKYCKNLSSLPVTISSLKCLRTLKLSGCSKLK--KF 362 (830)
Q Consensus 285 ~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~--~~ 362 (830)
|.+....|..++.+++|++|++++|.++.+|..+. ++|+.|++++|......+..+..+++|+.|++++|.... ..
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 163 (330)
T 1xku_A 86 NKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE 163 (330)
T ss_dssp SCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBC
T ss_pred CcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcC
Confidence 44444445555666666666666666666665443 567777777766665556667777777777777766542 22
Q ss_pred -CcccCCCCCcEEEecCCcccccCcccCCCCCccEEecCCccCcccccccccCCCCCCEEeccCCCCCCccCcccCCCCC
Q 044302 363 -PQIVGMEGLSELYLDGTSITEVPSSIELLPGIELLNLNDCKNLVRLPRSINGLKALKTLSLSGCCKLENVPDTLGQVES 441 (830)
Q Consensus 363 -~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~ 441 (830)
..+..+++|+.|++++|.++.+|..+. ++|+.|++++|......+..+..+++|++|++++|......+..+..+++
T Consensus 164 ~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 241 (330)
T 1xku_A 164 NGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH 241 (330)
T ss_dssp TTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTT
T ss_pred hhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCC
Confidence 235567788888888888887776553 78888888888877777777888888888888888777766677788888
Q ss_pred ccEEecCCCcccCCCcccccCCCCcEEEcCCCCCCC
Q 044302 442 LEELDISGTATRRPPCSIFHMKNLKTLSFSGCNGPP 477 (830)
Q Consensus 442 L~~L~L~~n~i~~l~~~l~~l~~L~~L~L~~~~~~~ 477 (830)
|++|++++|.+..+|..+..+++|++|++++|++..
T Consensus 242 L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~ 277 (330)
T 1xku_A 242 LRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISA 277 (330)
T ss_dssp CCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCC
T ss_pred CCEEECCCCcCccCChhhccCCCcCEEECCCCcCCc
Confidence 888888888888888777778888888888777543
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.93 E-value=5.3e-25 Score=237.49 Aligned_cols=288 Identities=17% Similarity=0.165 Sum_probs=170.9
Q ss_pred CcceEEEecCCCCCCCCCCCCCCceEEEccCCChhhccc-CCCCCCcccEEEccCCCCCCC-CCCCCCCCceeEEeeeCC
Q 044302 161 KLRLLVWHQYPLKSLPSNLQLDKIVEFEMCYSRIEELWK-GIKPLNTLKVMKLSHSENLIK-TPNFIEVPNLEVLDLEGC 238 (830)
Q Consensus 161 ~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~-~~~~l~~L~~L~L~~~~~~~~-~~~~~~l~~L~~L~L~~~ 238 (830)
++++++++++.++.+|..+ .+.|++|++++|.|+.++. .+..+++|++|+|++|..... +..|..+++|++|++++|
T Consensus 32 ~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred CCeEEEecCCCccccCccC-CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence 5666666666666666554 2466777777777776654 566677777777777654443 234666777777777764
Q ss_pred cccccccccccCCCCccEEecCCCCCCccCCcccc--cCcccEEeccCccccc--ccCCCCCccccceEeeccccccccc
Q 044302 239 TRLREIHSSLVRHNKLILLNLKGCTSLTTLPGEIF--MKSLKTLVLSGCLKLR--KFPHVGGSMECLQELFLDETDIKEM 314 (830)
Q Consensus 239 ~~l~~~~~~l~~l~~L~~L~L~~c~~l~~lp~~~~--l~~L~~L~L~~~~~~~--~~~~~~~~l~~L~~L~L~~~~i~~l 314 (830)
. +..+|..+. ++|++|++++ +.+..++...+ +++|++|++++|.... ..+..++.+++|+.|++++|.+..+
T Consensus 111 ~-l~~l~~~~~--~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l 186 (330)
T 1xku_A 111 Q-LKELPEKMP--KTLQELRVHE-NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI 186 (330)
T ss_dssp C-CSBCCSSCC--TTCCEEECCS-SCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred c-CCccChhhc--ccccEEECCC-CcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC
Confidence 3 445555544 5677777776 34555544322 6677777777766542 4556667777777788877777777
Q ss_pred ccchhcccCCcEEeccCCCCCCCCccccccCccCcEEeecCCCCCCcCC-cccCCCCCcEEEecCCcccccCcccCCCCC
Q 044302 315 PLSIEHLSGLILLTLKYCKNLSSLPVTISSLKCLRTLKLSGCSKLKKFP-QIVGMEGLSELYLDGTSITEVPSSIELLPG 393 (830)
Q Consensus 315 ~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~ 393 (830)
|..+. ++|+.|++++|......+..+..+++|+.|++++|......+ .+..+++|+.|++++|.++.+|..+..+++
T Consensus 187 ~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~ 264 (330)
T 1xku_A 187 PQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKY 264 (330)
T ss_dssp CSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSS
T ss_pred Ccccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCC
Confidence 76543 677777777776666556666677777777777666554443 244566666666666666666666666666
Q ss_pred ccEEecCCccCcccccccccCCCCCCEEeccCCCCCCccCcccCCCCCccEEecCCCccc---CCCcccccCCCCcEEEc
Q 044302 394 IELLNLNDCKNLVRLPRSINGLKALKTLSLSGCCKLENVPDTLGQVESLEELDISGTATR---RPPCSIFHMKNLKTLSF 470 (830)
Q Consensus 394 L~~L~L~~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~n~i~---~l~~~l~~l~~L~~L~L 470 (830)
|+.|++++|......+..+.... ......+|+.|++++|.+. ..|..+..+++|+.++|
T Consensus 265 L~~L~l~~N~i~~~~~~~f~~~~------------------~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L 326 (330)
T 1xku_A 265 IQVVYLHNNNISAIGSNDFCPPG------------------YNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 326 (330)
T ss_dssp CCEEECCSSCCCCCCTTSSSCSS------------------CCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC
T ss_pred cCEEECCCCcCCccChhhcCCcc------------------cccccccccceEeecCcccccccCccccccccceeEEEe
Confidence 66666666654443333332110 0011245555555555554 22334445566666666
Q ss_pred CCC
Q 044302 471 SGC 473 (830)
Q Consensus 471 ~~~ 473 (830)
++|
T Consensus 327 ~~N 329 (330)
T 1xku_A 327 GNY 329 (330)
T ss_dssp ---
T ss_pred ccc
Confidence 655
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.93 E-value=4.2e-25 Score=238.45 Aligned_cols=288 Identities=16% Similarity=0.178 Sum_probs=179.5
Q ss_pred CcceEEEecCCCCCCCCCCCCCCceEEEccCCChhhcc-cCCCCCCcccEEEccCCCCCCCCC-CCCCCCceeEEeeeCC
Q 044302 161 KLRLLVWHQYPLKSLPSNLQLDKIVEFEMCYSRIEELW-KGIKPLNTLKVMKLSHSENLIKTP-NFIEVPNLEVLDLEGC 238 (830)
Q Consensus 161 ~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~-~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~L~~~ 238 (830)
+++.++++++.++.+|..+ .++|++|++++|.++.++ ..+..+++|++|+|++|......+ .|.++++|++|++++|
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 5667777777777777655 356777777777777764 357777777777777776444323 4677777777777774
Q ss_pred cccccccccccCCCCccEEecCCCCCCccCCcccc--cCcccEEeccCccccc--ccCCCCCccccceEeeccccccccc
Q 044302 239 TRLREIHSSLVRHNKLILLNLKGCTSLTTLPGEIF--MKSLKTLVLSGCLKLR--KFPHVGGSMECLQELFLDETDIKEM 314 (830)
Q Consensus 239 ~~l~~~~~~l~~l~~L~~L~L~~c~~l~~lp~~~~--l~~L~~L~L~~~~~~~--~~~~~~~~l~~L~~L~L~~~~i~~l 314 (830)
.+..+|..+. ++|++|++++ +.++.+|...+ +++|++|++++|.+.. ..+..++.+ +|+.|++++|.++.+
T Consensus 113 -~l~~l~~~~~--~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l 187 (332)
T 2ft3_A 113 -HLVEIPPNLP--SSLVELRIHD-NRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGI 187 (332)
T ss_dssp -CCCSCCSSCC--TTCCEEECCS-SCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSC
T ss_pred -cCCccCcccc--ccCCEEECCC-CccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCcc
Confidence 3445665554 6777777777 45566665433 7777777777776642 455666666 788888888888877
Q ss_pred ccchhcccCCcEEeccCCCCCCCCccccccCccCcEEeecCCCCCCcCC-cccCCCCCcEEEecCCcccccCcccCCCCC
Q 044302 315 PLSIEHLSGLILLTLKYCKNLSSLPVTISSLKCLRTLKLSGCSKLKKFP-QIVGMEGLSELYLDGTSITEVPSSIELLPG 393 (830)
Q Consensus 315 ~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~ 393 (830)
|..+. ++|+.|++++|......+..+..+++|+.|++++|......+ .+..+++|+.|++++|.++.+|..+..+++
T Consensus 188 ~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~ 265 (332)
T 2ft3_A 188 PKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKL 265 (332)
T ss_dssp CSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTT
T ss_pred Ccccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCcc
Confidence 76554 677778887777766666677777777777777766555444 255566666666666666666666666666
Q ss_pred ccEEecCCccCcccccccccCCCCCCEEeccCCCCCCccCcccCCCCCccEEecCCCccc---CCCcccccCCCCcEEEc
Q 044302 394 IELLNLNDCKNLVRLPRSINGLKALKTLSLSGCCKLENVPDTLGQVESLEELDISGTATR---RPPCSIFHMKNLKTLSF 470 (830)
Q Consensus 394 L~~L~L~~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~n~i~---~l~~~l~~l~~L~~L~L 470 (830)
|+.|++++|......+..+.... ......+|+.|++++|.+. ..|..+..+++|+.|++
T Consensus 266 L~~L~l~~N~l~~~~~~~~~~~~------------------~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l 327 (332)
T 2ft3_A 266 LQVVYLHTNNITKVGVNDFCPVG------------------FGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQF 327 (332)
T ss_dssp CCEEECCSSCCCBCCTTSSSCSS------------------CCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC
T ss_pred CCEEECCCCCCCccChhHccccc------------------cccccccccceEeecCcccccccCcccccccchhhhhhc
Confidence 66666666654443333332210 0001244555556555554 22334455666666666
Q ss_pred CCCC
Q 044302 471 SGCN 474 (830)
Q Consensus 471 ~~~~ 474 (830)
++|+
T Consensus 328 ~~n~ 331 (332)
T 2ft3_A 328 GNYK 331 (332)
T ss_dssp ----
T ss_pred cccc
Confidence 6654
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.93 E-value=1.3e-24 Score=234.63 Aligned_cols=292 Identities=16% Similarity=0.160 Sum_probs=177.2
Q ss_pred cccEEEccCCCCCCCCCCCCCCCceeEEeeeCCcccccccccccCCCCccEEecCCCCCCccCCcccccCcccEEeccCc
Q 044302 206 TLKVMKLSHSENLIKTPNFIEVPNLEVLDLEGCTRLREIHSSLVRHNKLILLNLKGCTSLTTLPGEIFMKSLKTLVLSGC 285 (830)
Q Consensus 206 ~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~~ 285 (830)
+|+.++++++.....+..+ .++|++|++++|......+..+.++++|++|++++ |
T Consensus 34 ~l~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~-----------------------n 88 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVN-----------------------N 88 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-----------------------S
T ss_pred cCCEEECCCCCccccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCC-----------------------C
Confidence 5677777766533222223 25666666666543333334555555555555555 4
Q ss_pred ccccccCCCCCccccceEeecccccccccccchhcccCCcEEeccCCCCCCCCccccccCccCcEEeecCCCCCC--cCC
Q 044302 286 LKLRKFPHVGGSMECLQELFLDETDIKEMPLSIEHLSGLILLTLKYCKNLSSLPVTISSLKCLRTLKLSGCSKLK--KFP 363 (830)
Q Consensus 286 ~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~--~~~ 363 (830)
.+....|..++.+++|++|++++|.+..+|..+. ++|++|++++|......+..+..+++|++|++++|.... ..+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 166 (332)
T 2ft3_A 89 KISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEP 166 (332)
T ss_dssp CCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCT
T ss_pred ccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCc
Confidence 4333344455556666666666666666665444 566677777666655555556777777777777776542 223
Q ss_pred c-ccCCCCCcEEEecCCcccccCcccCCCCCccEEecCCccCcccccccccCCCCCCEEeccCCCCCCccCcccCCCCCc
Q 044302 364 Q-IVGMEGLSELYLDGTSITEVPSSIELLPGIELLNLNDCKNLVRLPRSINGLKALKTLSLSGCCKLENVPDTLGQVESL 442 (830)
Q Consensus 364 ~-~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L 442 (830)
. +..+ +|+.|++++|.++.+|..+. ++|+.|++++|......+..+..+++|+.|++++|......+..+..+++|
T Consensus 167 ~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 243 (332)
T 2ft3_A 167 GAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTL 243 (332)
T ss_dssp TSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTC
T ss_pred ccccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCC
Confidence 2 3334 78888888888888776553 678888888887777666777778888888888877777666677777888
Q ss_pred cEEecCCCcccCCCcccccCCCCcEEEcCCCCCCCCCCccccCCCCCCCCccCeecCCCCCCCCCccccccCCCCCCCEE
Q 044302 443 EELDISGTATRRPPCSIFHMKNLKTLSFSGCNGPPSTASSLMLPSLSGLCSLTKLDLSDCGLGEGAILSDIGNLHSLKAL 522 (830)
Q Consensus 443 ~~L~L~~n~i~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L 522 (830)
++|++++|.+..+|..+..+++|++|++++|++....... +... ......++|+.|
T Consensus 244 ~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~-----~~~~-------------------~~~~~~~~l~~L 299 (332)
T 2ft3_A 244 RELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVND-----FCPV-------------------GFGVKRAYYNGI 299 (332)
T ss_dssp CEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTS-----SSCS-------------------SCCSSSCCBSEE
T ss_pred CEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhH-----cccc-------------------ccccccccccce
Confidence 8888888888777777777777777777777644321111 1100 000113456666
Q ss_pred eCCCCCCc--c-cCcccCCCCccCEeeccccc
Q 044302 523 YLSENNFV--T-LPASISGLFNLEYLKLEDCK 551 (830)
Q Consensus 523 ~L~~n~l~--~-lp~~l~~L~~L~~L~L~~c~ 551 (830)
++++|.+. . .|..+..+++|+.|++++|+
T Consensus 300 ~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 300 SLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp ECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred EeecCcccccccCcccccccchhhhhhccccc
Confidence 66666554 2 23445666666777766664
No 45
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.92 E-value=4.9e-25 Score=235.48 Aligned_cols=249 Identities=19% Similarity=0.250 Sum_probs=170.7
Q ss_pred cceEeeccccccc---ccccchhcccCCcEEeccC-CCCCCCCccccccCccCcEEeecCCCCCCcCCc-ccCCCCCcEE
Q 044302 300 CLQELFLDETDIK---EMPLSIEHLSGLILLTLKY-CKNLSSLPVTISSLKCLRTLKLSGCSKLKKFPQ-IVGMEGLSEL 374 (830)
Q Consensus 300 ~L~~L~L~~~~i~---~l~~~l~~l~~L~~L~L~~-~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L 374 (830)
+++.|+++++.+. .+|..+..+++|++|++++ |.....+|..+..+++|++|++++|.....+|. +..+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 3445555555554 3455555555555555553 444445555566666666666666655544443 4456666666
Q ss_pred EecCCccc-ccCcccCCCCCccEEecCCccCcccccccccCCC-CCCEEeccCCCCCCccCcccCCCCCccEEecCCCcc
Q 044302 375 YLDGTSIT-EVPSSIELLPGIELLNLNDCKNLVRLPRSINGLK-ALKTLSLSGCCKLENVPDTLGQVESLEELDISGTAT 452 (830)
Q Consensus 375 ~L~~~~i~-~l~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~-~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~n~i 452 (830)
++++|.+. .+|..+..+++|++|++++|.....+|..+..++ +|++|++++|.....+|..+..+. |++|++++|.+
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l 209 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence 66666666 5666677777777777777776666677777776 777777777776666777776665 77777777777
Q ss_pred c-CCCcccccCCCCcEEEcCCCCCCCCCCccccCCCCCCCCccCeecCCCCCCCCCccccccCCCCCCCEEeCCCCCCc-
Q 044302 453 R-RPPCSIFHMKNLKTLSFSGCNGPPSTASSLMLPSLSGLCSLTKLDLSDCGLGEGAILSDIGNLHSLKALYLSENNFV- 530 (830)
Q Consensus 453 ~-~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~- 530 (830)
. ..|..+..+++|+.|++++|.... ..+.+..+++|++|++++|.++ +.+|..+..+++|+.|++++|+++
T Consensus 210 ~~~~~~~~~~l~~L~~L~L~~N~l~~------~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~ 282 (313)
T 1ogq_A 210 EGDASVLFGSDKNTQKIHLAKNSLAF------DLGKVGLSKNLNGLDLRNNRIY-GTLPQGLTQLKFLHSLNVSFNNLCG 282 (313)
T ss_dssp EECCGGGCCTTSCCSEEECCSSEECC------BGGGCCCCTTCCEEECCSSCCE-ECCCGGGGGCTTCCEEECCSSEEEE
T ss_pred cCcCCHHHhcCCCCCEEECCCCceee------ecCcccccCCCCEEECcCCccc-CcCChHHhcCcCCCEEECcCCcccc
Confidence 6 455566677778888887776542 2334667788888888888886 568888899999999999999998
Q ss_pred ccCcccCCCCccCEeeccccccccccC
Q 044302 531 TLPASISGLFNLEYLKLEDCKRLQSLP 557 (830)
Q Consensus 531 ~lp~~l~~L~~L~~L~L~~c~~l~~lp 557 (830)
.+|.. ..+++|+.|++++|+.+...|
T Consensus 283 ~ip~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 283 EIPQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp ECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred cCCCC-ccccccChHHhcCCCCccCCC
Confidence 66654 888999999999998766543
No 46
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.91 E-value=6.8e-27 Score=264.80 Aligned_cols=104 Identities=15% Similarity=0.104 Sum_probs=54.9
Q ss_pred ccCcceEEEecCCCCCCCCC--C-CCCCceEEEccCCChh-----hcccCCCCCCcccEEEccCCCCCCC-CCC-CCCCC
Q 044302 159 SNKLRLLVWHQYPLKSLPSN--L-QLDKIVEFEMCYSRIE-----ELWKGIKPLNTLKVMKLSHSENLIK-TPN-FIEVP 228 (830)
Q Consensus 159 ~~~Lr~L~l~~~~l~~lp~~--~-~l~~L~~L~L~~n~i~-----~l~~~~~~l~~L~~L~L~~~~~~~~-~~~-~~~l~ 228 (830)
|++|++|+++++.++..+.. + .+++|++|++++|.++ .++..+..+++|++|+|++|..... +.. +..++
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 34666777776666544321 2 4556666666666665 3444555566666666666642211 111 11122
Q ss_pred ----ceeEEeeeCCcccc----cccccccCCCCccEEecCCC
Q 044302 229 ----NLEVLDLEGCTRLR----EIHSSLVRHNKLILLNLKGC 262 (830)
Q Consensus 229 ----~L~~L~L~~~~~l~----~~~~~l~~l~~L~~L~L~~c 262 (830)
+|++|++++|.... .++..+..+++|++|++++|
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n 123 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 123 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSS
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCC
Confidence 46666666654331 34555556666666666653
No 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.90 E-value=2.3e-24 Score=230.28 Aligned_cols=243 Identities=16% Similarity=0.211 Sum_probs=120.5
Q ss_pred ceEEEccCCChh---hcccCCCCCCcccEEEccC-CCCCCCCC-CCCCCCceeEEeeeCCcccccccccccCCCCccEEe
Q 044302 184 IVEFEMCYSRIE---ELWKGIKPLNTLKVMKLSH-SENLIKTP-NFIEVPNLEVLDLEGCTRLREIHSSLVRHNKLILLN 258 (830)
Q Consensus 184 L~~L~L~~n~i~---~l~~~~~~l~~L~~L~L~~-~~~~~~~~-~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~ 258 (830)
++.|+|+++.+. .+|..+..+++|++|+|++ |.....+| .|..+++|++|++++|.....+|..+.++++|++|+
T Consensus 52 l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 131 (313)
T 1ogq_A 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD 131 (313)
T ss_dssp EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEE
T ss_pred EEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEe
Confidence 344444444443 2344444555555555553 33222222 345555555555555443334555555555555555
Q ss_pred cCCCCCCccCCcccc-cCcccEEeccCcccccccCCCCCccc-cceEeeccccccc-ccccchhcccCCcEEeccCCCCC
Q 044302 259 LKGCTSLTTLPGEIF-MKSLKTLVLSGCLKLRKFPHVGGSME-CLQELFLDETDIK-EMPLSIEHLSGLILLTLKYCKNL 335 (830)
Q Consensus 259 L~~c~~l~~lp~~~~-l~~L~~L~L~~~~~~~~~~~~~~~l~-~L~~L~L~~~~i~-~l~~~l~~l~~L~~L~L~~~~~~ 335 (830)
+++|.....+|..+. +++|++|++++|.+...+|..++.++ +|+.|++++|.+. .+|..+..++ |+.|++++|...
T Consensus 132 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~ 210 (313)
T 1ogq_A 132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLE 210 (313)
T ss_dssp CCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEE
T ss_pred CCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCccc
Confidence 555322223444333 45555555555544444555555554 5555555555555 4455555554 555555555554
Q ss_pred CCCccccccCccCcEEeecCCCCCCcCCcccCCCCCcEEEecCCcccccCcccCCCCCccEEecCCccCcccccccccCC
Q 044302 336 SSLPVTISSLKCLRTLKLSGCSKLKKFPQIVGMEGLSELYLDGTSITEVPSSIELLPGIELLNLNDCKNLVRLPRSINGL 415 (830)
Q Consensus 336 ~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l 415 (830)
...|..+..+++|+.|++++|.....++. +..+++|++|+|++|.....+|..+..+
T Consensus 211 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-----------------------~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 267 (313)
T 1ogq_A 211 GDASVLFGSDKNTQKIHLAKNSLAFDLGK-----------------------VGLSKNLNGLDLRNNRIYGTLPQGLTQL 267 (313)
T ss_dssp ECCGGGCCTTSCCSEEECCSSEECCBGGG-----------------------CCCCTTCCEEECCSSCCEECCCGGGGGC
T ss_pred CcCCHHHhcCCCCCEEECCCCceeeecCc-----------------------ccccCCCCEEECcCCcccCcCChHHhcC
Confidence 44555555555555555555544433333 3444445555555554444445555555
Q ss_pred CCCCEEeccCCCCCCccCcccCCCCCccEEecCCCc
Q 044302 416 KALKTLSLSGCCKLENVPDTLGQVESLEELDISGTA 451 (830)
Q Consensus 416 ~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~n~ 451 (830)
++|+.|++++|.....+|.. +.+++|+.|++++|.
T Consensus 268 ~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 268 KFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp TTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred cCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 55555555555554444443 555556666666554
No 48
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.90 E-value=8.4e-27 Score=264.01 Aligned_cols=371 Identities=18% Similarity=0.178 Sum_probs=191.6
Q ss_pred CCCceEEEccCCChhhcc--cCCCCCCcccEEEccCCCCCCC-----CCCCCCCCceeEEeeeCCcccccccccc-cCCC
Q 044302 181 LDKIVEFEMCYSRIEELW--KGIKPLNTLKVMKLSHSENLIK-----TPNFIEVPNLEVLDLEGCTRLREIHSSL-VRHN 252 (830)
Q Consensus 181 l~~L~~L~L~~n~i~~l~--~~~~~l~~L~~L~L~~~~~~~~-----~~~~~~l~~L~~L~L~~~~~l~~~~~~l-~~l~ 252 (830)
+++|++|+|+++.+...+ ..+..+++|++|+|++|..... ...+..+++|++|++++|......+..+ ..++
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 356788888888877542 2256677788888887763311 1224556667777776654322222221 1222
Q ss_pred ----CccEEecCCCCCCccCCcccccCcccEEeccCcccccccCCCCCccccceEeeccccccccc-ccch-----hccc
Q 044302 253 ----KLILLNLKGCTSLTTLPGEIFMKSLKTLVLSGCLKLRKFPHVGGSMECLQELFLDETDIKEM-PLSI-----EHLS 322 (830)
Q Consensus 253 ----~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l-~~~l-----~~l~ 322 (830)
+|++|++++|. ++... ...++..+..+++|++|++++|.+... +..+ ...+
T Consensus 82 ~~~~~L~~L~L~~n~-i~~~~------------------~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~ 142 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCC-LTGAG------------------CGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQC 142 (461)
T ss_dssp STTCCCCEEECTTSC-CBGGG------------------HHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTC
T ss_pred hCCCceeEEEccCCC-CCHHH------------------HHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCC
Confidence 46666666532 22100 012233344444444444444444311 1111 1123
Q ss_pred CCcEEeccCCCCCCC----CccccccCccCcEEeecCCCCCCcCCc-cc-----CCCCCcEEEecCCcccc-----cCcc
Q 044302 323 GLILLTLKYCKNLSS----LPVTISSLKCLRTLKLSGCSKLKKFPQ-IV-----GMEGLSELYLDGTSITE-----VPSS 387 (830)
Q Consensus 323 ~L~~L~L~~~~~~~~----~~~~l~~l~~L~~L~L~~~~~~~~~~~-~~-----~l~~L~~L~L~~~~i~~-----l~~~ 387 (830)
+|++|++++|..... ++..+..+++|++|++++|......+. +. ..++|+.|++++|.++. ++..
T Consensus 143 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 222 (461)
T 1z7x_W 143 RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI 222 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHH
T ss_pred cceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHH
Confidence 455555555544332 233344455555555555543221111 11 23456666666666553 4555
Q ss_pred cCCCCCccEEecCCccCcccc-----cccccCCCCCCEEeccCCCCCCc----cCcccCCCCCccEEecCCCcccCC---
Q 044302 388 IELLPGIELLNLNDCKNLVRL-----PRSINGLKALKTLSLSGCCKLEN----VPDTLGQVESLEELDISGTATRRP--- 455 (830)
Q Consensus 388 ~~~l~~L~~L~L~~~~~l~~l-----~~~~~~l~~L~~L~L~~~~~l~~----~~~~l~~l~~L~~L~L~~n~i~~l--- 455 (830)
+..+++|+.|++++|.....- +..+..+++|++|++++|..... ++..+..+++|++|++++|.+...
T Consensus 223 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 302 (461)
T 1z7x_W 223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 302 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH
Confidence 556666677777666543321 12223466777777777655433 455555667777777777766421
Q ss_pred --Ccccc-cCCCCcEEEcCCCCCCCCCCccccCCCCCCCCccCeecCCCCCCCCCccc---cccCC-CCCCCEEeCCCCC
Q 044302 456 --PCSIF-HMKNLKTLSFSGCNGPPSTASSLMLPSLSGLCSLTKLDLSDCGLGEGAIL---SDIGN-LHSLKALYLSENN 528 (830)
Q Consensus 456 --~~~l~-~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~---~~l~~-l~~L~~L~L~~n~ 528 (830)
...+. ..++|++|++++|......... ....+..+++|++|++++|.+.+.... ..+.. .++|+.|++++|.
T Consensus 303 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~-l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 381 (461)
T 1z7x_W 303 LLCETLLEPGCQLESLWVKSCSFTAACCSH-FSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD 381 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCBGGGHHH-HHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHhccCCccceeeEcCCCCCchHHHHH-HHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC
Confidence 11111 1257777777777643210000 011244567777777777776532111 11222 5678888888888
Q ss_pred Cc-----ccCcccCCCCccCEeecccccccc--------ccCCCCCCcceeeccCC
Q 044302 529 FV-----TLPASISGLFNLEYLKLEDCKRLQ--------SLPQLPPNVHNVRLNGC 571 (830)
Q Consensus 529 l~-----~lp~~l~~L~~L~~L~L~~c~~l~--------~lp~lp~sL~~L~i~~C 571 (830)
++ .+|..+..+++|++|++++|+.-. .+|.-...|+.|.+.++
T Consensus 382 i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~ 437 (461)
T 1z7x_W 382 VSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDI 437 (461)
T ss_dssp CCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTC
T ss_pred CChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeeccc
Confidence 77 567777777888888888875321 12322335666665543
No 49
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=5e-23 Score=221.25 Aligned_cols=218 Identities=25% Similarity=0.447 Sum_probs=142.1
Q ss_pred CccEEecCCCCCCccCCcccc-cCcccEEeccCcccccccCCCCCccccceEeecccccccccccchhcccCCcEEeccC
Q 044302 253 KLILLNLKGCTSLTTLPGEIF-MKSLKTLVLSGCLKLRKFPHVGGSMECLQELFLDETDIKEMPLSIEHLSGLILLTLKY 331 (830)
Q Consensus 253 ~L~~L~L~~c~~l~~lp~~~~-l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~l~~l~~L~~L~L~~ 331 (830)
+++.|++++ +.++.+|..+. +++|++|++++|.+. .+|..++.+++|++|++++|.+..+|..+..+++|++|++++
T Consensus 82 ~l~~L~L~~-n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 82 GRVALELRS-VPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA 159 (328)
T ss_dssp TCCEEEEES-SCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEE
T ss_pred ceeEEEccC-CCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCC
Confidence 344444444 33334444433 445555555554444 455556666666777777777777777777777777777777
Q ss_pred CCCCCCCcccccc---------CccCcEEeecCCCCCCcCCc-ccCCCCCcEEEecCCcccccCcccCCCCCccEEecCC
Q 044302 332 CKNLSSLPVTISS---------LKCLRTLKLSGCSKLKKFPQ-IVGMEGLSELYLDGTSITEVPSSIELLPGIELLNLND 401 (830)
Q Consensus 332 ~~~~~~~~~~l~~---------l~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~ 401 (830)
|.....+|..+.. +++|++|++++|... .+|. +..+++|+.|++++|.+..+|..+..+++|+.|++++
T Consensus 160 n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~ 238 (328)
T 4fcg_A 160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRG 238 (328)
T ss_dssp ETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTT
T ss_pred CCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcC
Confidence 7777666665543 777777777776555 3333 5566777777777777777777777777777777777
Q ss_pred ccCcccccccccCCCCCCEEeccCCCCCCccCcccCCCCCccEEecCCCccc-CCCcccccCCCCcEEEcCCC
Q 044302 402 CKNLVRLPRSINGLKALKTLSLSGCCKLENVPDTLGQVESLEELDISGTATR-RPPCSIFHMKNLKTLSFSGC 473 (830)
Q Consensus 402 ~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~n~i~-~l~~~l~~l~~L~~L~L~~~ 473 (830)
|.....+|..+..+++|++|++++|.....+|..++.+++|++|+|++|.+. .+|..++++++|+.+.+..+
T Consensus 239 n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 239 CTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred CcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 7777777777777777777777777777777777777777777777776543 66667777777777766643
No 50
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=4.3e-23 Score=221.78 Aligned_cols=234 Identities=25% Similarity=0.387 Sum_probs=137.4
Q ss_pred cCcceEEEecCCCCCCCCCC-CCCCceEEEccCCChhhcccCCCCCCcccEEEccCCCCCCCCCCCCCCCceeEEeeeCC
Q 044302 160 NKLRLLVWHQYPLKSLPSNL-QLDKIVEFEMCYSRIEELWKGIKPLNTLKVMKLSHSENLIKTPNFIEVPNLEVLDLEGC 238 (830)
Q Consensus 160 ~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~ 238 (830)
..++.|+++++.++.+|..+ .+.+|++|+|++|.++.+|..+..+++|++|+|++|...
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-------------------- 140 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-------------------- 140 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC--------------------
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc--------------------
Confidence 35666666666666666554 555555555555555555555555555555555555433
Q ss_pred cccccccccccCCCCccEEecCCCCCCccCCcccccCcccEEeccCcccccccCCCCCccccceEeecccccccccccch
Q 044302 239 TRLREIHSSLVRHNKLILLNLKGCTSLTTLPGEIFMKSLKTLVLSGCLKLRKFPHVGGSMECLQELFLDETDIKEMPLSI 318 (830)
Q Consensus 239 ~~l~~~~~~l~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~l 318 (830)
.+|..++++++|++|++++|+.+..+|..+. .. ..+..++.+++|+.|++++|.++.+|..+
T Consensus 141 ----~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~-----~~---------~~~~~~~~l~~L~~L~L~~n~l~~lp~~l 202 (328)
T 4fcg_A 141 ----ALPASIASLNRLRELSIRACPELTELPEPLA-----ST---------DASGEHQGLVNLQSLRLEWTGIRSLPASI 202 (328)
T ss_dssp ----CCCGGGGGCTTCCEEEEEEETTCCCCCSCSE-----EE---------C-CCCEEESTTCCEEEEEEECCCCCCGGG
T ss_pred ----cCcHHHhcCcCCCEEECCCCCCccccChhHh-----hc---------cchhhhccCCCCCEEECcCCCcCcchHhh
Confidence 4444444444455555444444444443221 00 01122345566666666666666666666
Q ss_pred hcccCCcEEeccCCCCCCCCccccccCccCcEEeecCCCCCCcCCcccCCCCCcEEEecCCcccccCcccCCCCCccEEe
Q 044302 319 EHLSGLILLTLKYCKNLSSLPVTISSLKCLRTLKLSGCSKLKKFPQIVGMEGLSELYLDGTSITEVPSSIELLPGIELLN 398 (830)
Q Consensus 319 ~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~ 398 (830)
..+++|+.|++++|.... +|..+..+++|++|++++|.....+ |..+..+++|+.|+
T Consensus 203 ~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~----------------------p~~~~~l~~L~~L~ 259 (328)
T 4fcg_A 203 ANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNY----------------------PPIFGGRAPLKRLI 259 (328)
T ss_dssp GGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBC----------------------CCCTTCCCCCCEEE
T ss_pred cCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhh----------------------HHHhcCCCCCCEEE
Confidence 677777777777766553 4445666666666666665544433 33455556666666
Q ss_pred cCCccCcccccccccCCCCCCEEeccCCCCCCccCcccCCCCCccEEecCCCcccC
Q 044302 399 LNDCKNLVRLPRSINGLKALKTLSLSGCCKLENVPDTLGQVESLEELDISGTATRR 454 (830)
Q Consensus 399 L~~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~n~i~~ 454 (830)
|++|.....+|..+..+++|++|+|++|+..+.+|..++.+++|+.+++..+.+..
T Consensus 260 L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 260 LKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQ 315 (328)
T ss_dssp CTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC
T ss_pred CCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHH
Confidence 66666666666666777777777777777777777777777777777777655443
No 51
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.89 E-value=1.8e-25 Score=261.53 Aligned_cols=229 Identities=15% Similarity=0.154 Sum_probs=101.8
Q ss_pred hhcccCCcEEeccCCCCCCCCccccccCccCcEEeecCCCCCCc-CCc-ccCCCCCcEEEecCCccc--ccCcccCCCCC
Q 044302 318 IEHLSGLILLTLKYCKNLSSLPVTISSLKCLRTLKLSGCSKLKK-FPQ-IVGMEGLSELYLDGTSIT--EVPSSIELLPG 393 (830)
Q Consensus 318 l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~-~~~-~~~l~~L~~L~L~~~~i~--~l~~~~~~l~~ 393 (830)
+..+++|+.|.++++ ....+|..+..+++|++|++++|..... +.. +..+++|+.|++. +.+. .++.....+++
T Consensus 266 l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~ 343 (592)
T 3ogk_B 266 LVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQ 343 (592)
T ss_dssp CCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTT
T ss_pred hhccccccccCcccc-chhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCC
Confidence 344444444444442 2233344444444555555554441111 101 2344555555554 2222 22222344455
Q ss_pred ccEEecCC----------ccCccc--ccccccCCCCCCEEeccCCCCCCccCcccCC-CCCccEEecC----CCcccCCC
Q 044302 394 IELLNLND----------CKNLVR--LPRSINGLKALKTLSLSGCCKLENVPDTLGQ-VESLEELDIS----GTATRRPP 456 (830)
Q Consensus 394 L~~L~L~~----------~~~l~~--l~~~~~~l~~L~~L~L~~~~~l~~~~~~l~~-l~~L~~L~L~----~n~i~~l~ 456 (830)
|++|++++ |..... ++.....+++|++|+++.+......+..++. +++|++|+++ .+.++..|
T Consensus 344 L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p 423 (592)
T 3ogk_B 344 LKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLP 423 (592)
T ss_dssp CCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCC
T ss_pred CCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCch
Confidence 55555553 322221 2222334555555555444433333333332 4555555554 33344322
Q ss_pred ------cccccCCCCcEEEcCCCCCCCCCCccccCCC-CCCCCccCeecCCCCCCCCCccccccCCCCCCCEEeCCCCCC
Q 044302 457 ------CSIFHMKNLKTLSFSGCNGPPSTASSLMLPS-LSGLCSLTKLDLSDCGLGEGAILSDIGNLHSLKALYLSENNF 529 (830)
Q Consensus 457 ------~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~-l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l 529 (830)
..+..+++|++|+++.|... .....+.. ...+++|+.|++++|++++..++..+.++++|++|+|++|.+
T Consensus 424 ~~~~~~~~~~~~~~L~~L~L~~~~~~---l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l 500 (592)
T 3ogk_B 424 LDNGVRSLLIGCKKLRRFAFYLRQGG---LTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCF 500 (592)
T ss_dssp CHHHHHHHHHHCTTCCEEEEECCGGG---CCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCC
T ss_pred HHHHHHHHHHhCCCCCEEEEecCCCC---ccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCC
Confidence 12334566666666544321 00001111 123555666666666665434444455566666666666665
Q ss_pred c--ccCcccCCCCccCEeeccccc
Q 044302 530 V--TLPASISGLFNLEYLKLEDCK 551 (830)
Q Consensus 530 ~--~lp~~l~~L~~L~~L~L~~c~ 551 (830)
+ .++..+..+++|++|+|++|+
T Consensus 501 ~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 501 SERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp BHHHHHHHHHHCSSCCEEEEESCB
T ss_pred cHHHHHHHHHhcCccCeeECcCCc
Confidence 4 133334456666666666665
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.89 E-value=5.2e-23 Score=224.07 Aligned_cols=272 Identities=17% Similarity=0.159 Sum_probs=177.2
Q ss_pred ccEEecCCCCCCccCCcccccCcccEEeccCcccccccCCCCCccccceEeecccccccccccchhcccCCcEEeccCCC
Q 044302 254 LILLNLKGCTSLTTLPGEIFMKSLKTLVLSGCLKLRKFPHVGGSMECLQELFLDETDIKEMPLSIEHLSGLILLTLKYCK 333 (830)
Q Consensus 254 L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~l~~l~~L~~L~L~~~~ 333 (830)
....+.++ +.++.+|..+ .++|++|++++|.+....+..++.+++|+.|++++|.++.+
T Consensus 33 ~~~c~~~~-~~l~~iP~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~------------------- 91 (353)
T 2z80_A 33 NGICKGSS-GSLNSIPSGL-TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI------------------- 91 (353)
T ss_dssp TSEEECCS-TTCSSCCTTC-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEE-------------------
T ss_pred CeEeeCCC-CCcccccccc-cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCcc-------------------
Confidence 33455555 5566666533 24566666666555444444455555555555555555544
Q ss_pred CCCCCccccccCccCcEEeecCCCCCCcCCc-ccCCCCCcEEEecCCcccccCc--ccCCCCCccEEecCCccCccc-cc
Q 044302 334 NLSSLPVTISSLKCLRTLKLSGCSKLKKFPQ-IVGMEGLSELYLDGTSITEVPS--SIELLPGIELLNLNDCKNLVR-LP 409 (830)
Q Consensus 334 ~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~L~~~~i~~l~~--~~~~l~~L~~L~L~~~~~l~~-l~ 409 (830)
.+..+..+++|++|++++|......+. +..+++|++|++++|.++.+|. .+..+++|+.|++++|..... .+
T Consensus 92 ----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 167 (353)
T 2z80_A 92 ----EEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR 167 (353)
T ss_dssp ----CTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT
T ss_pred ----CHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCH
Confidence 333444555555555555444332222 4455666666666666666665 566777777777777753333 34
Q ss_pred ccccCCCCCCEEeccCCCCCCccCcccCCCCCccEEecCCCcccCCCcccc-cCCCCcEEEcCCCCCCCCCCccccCCCC
Q 044302 410 RSINGLKALKTLSLSGCCKLENVPDTLGQVESLEELDISGTATRRPPCSIF-HMKNLKTLSFSGCNGPPSTASSLMLPSL 488 (830)
Q Consensus 410 ~~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~n~i~~l~~~l~-~l~~L~~L~L~~~~~~~~~~~~~~l~~l 488 (830)
..+.++++|++|++++|......|..++.+++|++|++++|.+..+|..+. .+++|+.|++++|........ .++..
T Consensus 168 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~--~l~~~ 245 (353)
T 2z80_A 168 KDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFS--ELSTG 245 (353)
T ss_dssp TTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-------
T ss_pred HHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccc--ccccc
Confidence 567777888888888887777777778888888888888888877765544 478888888888876543221 12223
Q ss_pred CCCCccCeecCCCCCCCCC---ccccccCCCCCCCEEeCCCCCCcccCccc-CCCCccCEeecccccc
Q 044302 489 SGLCSLTKLDLSDCGLGEG---AILSDIGNLHSLKALYLSENNFVTLPASI-SGLFNLEYLKLEDCKR 552 (830)
Q Consensus 489 ~~l~~L~~L~Ls~~~l~~~---~~~~~l~~l~~L~~L~L~~n~l~~lp~~l-~~L~~L~~L~L~~c~~ 552 (830)
...+.++.++++++.+... .+|..+..+++|+.|++++|+++.+|..+ ..+++|++|+|++|+.
T Consensus 246 ~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 246 ETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp -CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCc
Confidence 4556777888888877532 35667889999999999999999999885 8999999999999964
No 53
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.89 E-value=8.2e-22 Score=227.96 Aligned_cols=258 Identities=21% Similarity=0.207 Sum_probs=151.0
Q ss_pred CCCceEEEcCcccCCCccccccCcceEEEecCCCCCCCCCCCCCCceEEEccCCChhhcccCCCCCCcccEEEccCCCCC
Q 044302 139 TNLRLLKIGNVQLPKGLEYLSNKLRLLVWHQYPLKSLPSNLQLDKIVEFEMCYSRIEELWKGIKPLNTLKVMKLSHSENL 218 (830)
Q Consensus 139 ~~Lr~L~l~~~~l~~~~~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~ 218 (830)
.+++.|++++|.+......++++|++|++++|.++.+|. .+++|++|+|++|.|+.+|. .+++|++|+|++|...
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~ 114 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLT 114 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCCTTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCC
T ss_pred CCCcEEEecCCCcCccChhhCCCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCC
Confidence 357777777777765545555678888888887777777 56777788888877777775 5677777777777533
Q ss_pred CCCCCCCCCCceeEEeeeCCcccccccccccCCCCccEEecCCCCCCccCCcccccCcccEEeccCcccccccCCCCCcc
Q 044302 219 IKTPNFIEVPNLEVLDLEGCTRLREIHSSLVRHNKLILLNLKGCTSLTTLPGEIFMKSLKTLVLSGCLKLRKFPHVGGSM 298 (830)
Q Consensus 219 ~~~~~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~~~~~~~~~~~~~~l 298 (830)
.+|. .+++|++|++++| .+..+|.. +++|++|++++ +.++.+|. .+.+|+.|++++|.+.. +| ..+
T Consensus 115 -~l~~--~l~~L~~L~L~~N-~l~~lp~~---l~~L~~L~Ls~-N~l~~l~~--~~~~L~~L~L~~N~l~~-l~---~~~ 180 (622)
T 3g06_A 115 -HLPA--LPSGLCKLWIFGN-QLTSLPVL---PPGLQELSVSD-NQLASLPA--LPSELCKLWAYNNQLTS-LP---MLP 180 (622)
T ss_dssp -CCCC--CCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCS-SCCSCCCC--CCTTCCEEECCSSCCSC-CC---CCC
T ss_pred -CCCC--CCCCcCEEECCCC-CCCcCCCC---CCCCCEEECcC-CcCCCcCC--ccCCCCEEECCCCCCCC-Cc---ccC
Confidence 3333 5567777777764 34445543 35666666666 34555543 23455556655554433 22 234
Q ss_pred ccceEeecccccccccccchhcccCCcEEeccCCCCCCCCccccccCccCcEEeecCCCCCCcCCcccCCCCCcEEEecC
Q 044302 299 ECLQELFLDETDIKEMPLSIEHLSGLILLTLKYCKNLSSLPVTISSLKCLRTLKLSGCSKLKKFPQIVGMEGLSELYLDG 378 (830)
Q Consensus 299 ~~L~~L~L~~~~i~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~ 378 (830)
++|+.|++++|.++.+|.. +++|+.| ++++|... .+|. .+++|+.|++++
T Consensus 181 ~~L~~L~Ls~N~l~~l~~~---~~~L~~L------------------------~L~~N~l~-~l~~--~~~~L~~L~Ls~ 230 (622)
T 3g06_A 181 SGLQELSVSDNQLASLPTL---PSELYKL------------------------WAYNNRLT-SLPA--LPSGLKELIVSG 230 (622)
T ss_dssp TTCCEEECCSSCCSCCCCC---CTTCCEE------------------------ECCSSCCS-SCCC--CCTTCCEEECCS
T ss_pred CCCcEEECCCCCCCCCCCc---cchhhEE------------------------ECcCCccc-ccCC--CCCCCCEEEccC
Confidence 5555555555555554432 2344444 44444322 2222 134556666666
Q ss_pred CcccccCcccCCCCCccEEecCCccCcccccccccCCCCCCEEeccCCCCCCccCcccCCCCCccEEecCCCccc
Q 044302 379 TSITEVPSSIELLPGIELLNLNDCKNLVRLPRSINGLKALKTLSLSGCCKLENVPDTLGQVESLEELDISGTATR 453 (830)
Q Consensus 379 ~~i~~l~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~n~i~ 453 (830)
|.++.+| ..+++|+.|+|++|.+. .+|. .+++|+.|++++|.+. .+|..+..+++|+.|+|++|.+.
T Consensus 231 N~L~~lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 231 NRLTSLP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp SCCSCCC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCC
T ss_pred CccCcCC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCC
Confidence 6666555 34456666666665443 3443 4556666666666544 55666666666666666666665
No 54
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.88 E-value=4.1e-25 Score=258.50 Aligned_cols=368 Identities=15% Similarity=0.079 Sum_probs=254.6
Q ss_pred CCCcccEEEccCCCCCCC-CCCCCC-CCc-eeEEeeeCCcccc--cccccccCCCCccEEecCCCCCCcc----CCcccc
Q 044302 203 PLNTLKVMKLSHSENLIK-TPNFIE-VPN-LEVLDLEGCTRLR--EIHSSLVRHNKLILLNLKGCTSLTT----LPGEIF 273 (830)
Q Consensus 203 ~l~~L~~L~L~~~~~~~~-~~~~~~-l~~-L~~L~L~~~~~l~--~~~~~l~~l~~L~~L~L~~c~~l~~----lp~~~~ 273 (830)
.+++|++|+|++|..... +..+.. +++ |++|++++|.... .++....++++|++|++++|..... ++....
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 567777777777642211 112333 333 8888888776332 2333344678888888888642111 222222
Q ss_pred -cCcccEEeccCcccc----cccCCCCCccccceEeecccccccccccchhcccCCcEEeccCCCCC---CCCccccccC
Q 044302 274 -MKSLKTLVLSGCLKL----RKFPHVGGSMECLQELFLDETDIKEMPLSIEHLSGLILLTLKYCKNL---SSLPVTISSL 345 (830)
Q Consensus 274 -l~~L~~L~L~~~~~~----~~~~~~~~~l~~L~~L~L~~~~i~~l~~~l~~l~~L~~L~L~~~~~~---~~~~~~l~~l 345 (830)
+++|++|++++|... ..++..+..+++|+.|+++++.+..++..+..+++|+.|+++.+... ...+..+..+
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~ 269 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFP 269 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhcc
Confidence 788888888887765 34555567789999999999999999999999999999999864433 3345567889
Q ss_pred ccCcEEeecCCCCCCcCCc-ccCCCCCcEEEecCCccc--ccCcccCCCCCccEEecCCccCcccccccccCCCCCCEEe
Q 044302 346 KCLRTLKLSGCSKLKKFPQ-IVGMEGLSELYLDGTSIT--EVPSSIELLPGIELLNLNDCKNLVRLPRSINGLKALKTLS 422 (830)
Q Consensus 346 ~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~L~~~~i~--~l~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~ 422 (830)
++|+.|.++++. ...++. +..+++|+.|++++|.++ .++..+..+++|+.|++.++.....++..+..+++|++|+
T Consensus 270 ~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~ 348 (592)
T 3ogk_B 270 RKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLR 348 (592)
T ss_dssp TTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEE
T ss_pred ccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEE
Confidence 999999999863 334444 456889999999999876 3334468999999999996544445566667899999999
Q ss_pred ccC----------CCCCCc--cCcccCCCCCccEEecCCCccc-CCCccccc-CCCCcEEEcCCCC---CCCCCCccccC
Q 044302 423 LSG----------CCKLEN--VPDTLGQVESLEELDISGTATR-RPPCSIFH-MKNLKTLSFSGCN---GPPSTASSLML 485 (830)
Q Consensus 423 L~~----------~~~l~~--~~~~l~~l~~L~~L~L~~n~i~-~l~~~l~~-l~~L~~L~L~~~~---~~~~~~~~~~l 485 (830)
+++ |..... ++.....+++|++|++..+.++ ..+..+.. +++|+.|++.++. .....+....+
T Consensus 349 L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~ 428 (592)
T 3ogk_B 349 IERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGV 428 (592)
T ss_dssp EECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHH
T ss_pred eecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHH
Confidence 995 555442 3333456899999999888776 33334444 8999999997432 22111000001
Q ss_pred CC-CCCCCccCeecCCCCC--CCCCccccccCCCCCCCEEeCCCCCCc--ccCcccCCCCccCEeeccccccccc--cCC
Q 044302 486 PS-LSGLCSLTKLDLSDCG--LGEGAILSDIGNLHSLKALYLSENNFV--TLPASISGLFNLEYLKLEDCKRLQS--LPQ 558 (830)
Q Consensus 486 ~~-l~~l~~L~~L~Ls~~~--l~~~~~~~~l~~l~~L~~L~L~~n~l~--~lp~~l~~L~~L~~L~L~~c~~l~~--lp~ 558 (830)
+. +.++++|+.|++++|. +++..+......+++|+.|++++|.++ .++..+..+++|++|+|++|+ +.. ++.
T Consensus 429 ~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~ 507 (592)
T 3ogk_B 429 RSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAA 507 (592)
T ss_dssp HHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHH
T ss_pred HHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHH
Confidence 11 5568999999998765 553333333345899999999999987 456667889999999999998 332 222
Q ss_pred ---CCCCcceeeccCCc
Q 044302 559 ---LPPNVHNVRLNGCA 572 (830)
Q Consensus 559 ---lp~sL~~L~i~~C~ 572 (830)
-.++|+.|++++|.
T Consensus 508 ~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 508 AVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHHHCSSCCEEEEESCB
T ss_pred HHHhcCccCeeECcCCc
Confidence 23689999999998
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.88 E-value=5.4e-22 Score=211.46 Aligned_cols=241 Identities=22% Similarity=0.189 Sum_probs=159.1
Q ss_pred EeecccccccccccchhcccCCcEEeccCCCCCCCCccccccCccCcEEeecCCCCCCc---CCcccCCCCCcEEEecCC
Q 044302 303 ELFLDETDIKEMPLSIEHLSGLILLTLKYCKNLSSLPVTISSLKCLRTLKLSGCSKLKK---FPQIVGMEGLSELYLDGT 379 (830)
Q Consensus 303 ~L~L~~~~i~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~---~~~~~~l~~L~~L~L~~~ 379 (830)
.++.+++.++.+|..+. ++|+.|++++|......+..+..+++|++|++++|..... ...+.++++|+.|++++|
T Consensus 11 ~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88 (306)
T ss_dssp EEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred EEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence 34555555555555332 4566666666655433333456666666666666654322 122445677777777777
Q ss_pred cccccCcccCCCCCccEEecCCccCccccc-ccccCCCCCCEEeccCCCCCCccCcccCCCCCccEEecCCCcccC--CC
Q 044302 380 SITEVPSSIELLPGIELLNLNDCKNLVRLP-RSINGLKALKTLSLSGCCKLENVPDTLGQVESLEELDISGTATRR--PP 456 (830)
Q Consensus 380 ~i~~l~~~~~~l~~L~~L~L~~~~~l~~l~-~~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~n~i~~--l~ 456 (830)
.+..+|..+..+++|+.|++++|......+ ..+..+++|++|++++|......+..+..+++|++|++++|.+.. +|
T Consensus 89 ~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 168 (306)
T 2z66_A 89 GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 168 (306)
T ss_dssp SEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEEC
T ss_pred ccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccch
Confidence 777777777777888888887776655444 467777888888888877777777777777888888888887764 66
Q ss_pred cccccCCCCcEEEcCCCCCCCCCCccccCCCCCCCCccCeecCCCCCCCCCccccccCCCCCCCEEeCCCCCCccc-Ccc
Q 044302 457 CSIFHMKNLKTLSFSGCNGPPSTASSLMLPSLSGLCSLTKLDLSDCGLGEGAILSDIGNLHSLKALYLSENNFVTL-PAS 535 (830)
Q Consensus 457 ~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~l-p~~ 535 (830)
..+..+++|++|++++|..... ....+..+++|++|++++|.+. ...+..+..+++|+.|++++|.+... |..
T Consensus 169 ~~~~~l~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 242 (306)
T 2z66_A 169 DIFTELRNLTFLDLSQCQLEQL-----SPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 242 (306)
T ss_dssp SCCTTCTTCCEEECTTSCCCEE-----CTTTTTTCTTCCEEECTTSCCS-BCCSGGGTTCTTCCEEECTTSCCCBCSSSS
T ss_pred hHHhhCcCCCEEECCCCCcCCc-----CHHHhcCCCCCCEEECCCCccC-ccChhhccCcccCCEeECCCCCCcccCHHH
Confidence 6777777777777777764421 1233666777777777777775 33344567777888888888877753 445
Q ss_pred cCCCC-ccCEeeccccc
Q 044302 536 ISGLF-NLEYLKLEDCK 551 (830)
Q Consensus 536 l~~L~-~L~~L~L~~c~ 551 (830)
+..++ +|++|+|++|+
T Consensus 243 ~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 243 LQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CCCCCTTCCEEECTTCC
T ss_pred HHhhhccCCEEEccCCC
Confidence 66663 77777777775
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.88 E-value=1.4e-21 Score=219.31 Aligned_cols=242 Identities=21% Similarity=0.252 Sum_probs=183.0
Q ss_pred eEeecccccccccccchhcccCCcEEeccCCCCCCCCccccccCccCcEEeecCCCCCCcCCc-ccCCCCCcEEEecCCc
Q 044302 302 QELFLDETDIKEMPLSIEHLSGLILLTLKYCKNLSSLPVTISSLKCLRTLKLSGCSKLKKFPQ-IVGMEGLSELYLDGTS 380 (830)
Q Consensus 302 ~~L~L~~~~i~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~L~~~~ 380 (830)
+.++..+..++.+|..+. ++++.|+|++|......+..+..+++|++|++++|......+. +.++++|+.|+|++|.
T Consensus 46 ~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 46 SKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp CEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred CEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 345555555666665443 5666666666666555556667777777777777665444332 5567777777777777
Q ss_pred ccccCc-ccCCCCCccEEecCCccCcccccccccCCCCCCEEeccCCCCCCccCc-ccCCCCCccEEecCCCcccCCCcc
Q 044302 381 ITEVPS-SIELLPGIELLNLNDCKNLVRLPRSINGLKALKTLSLSGCCKLENVPD-TLGQVESLEELDISGTATRRPPCS 458 (830)
Q Consensus 381 i~~l~~-~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~-~l~~l~~L~~L~L~~n~i~~l~~~ 458 (830)
++.++. .+..+++|+.|+|++|......+..+..+++|++|++++|+.+..++. .+..+++|++|++++|.+..+| .
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~ 202 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-N 202 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-C
T ss_pred CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-c
Confidence 777765 477788888888888877766666788888888888888777766654 6788899999999999998887 4
Q ss_pred cccCCCCcEEEcCCCCCCCCCCccccCCCCCCCCccCeecCCCCCCCCCccccccCCCCCCCEEeCCCCCCcccCcc-cC
Q 044302 459 IFHMKNLKTLSFSGCNGPPSTASSLMLPSLSGLCSLTKLDLSDCGLGEGAILSDIGNLHSLKALYLSENNFVTLPAS-IS 537 (830)
Q Consensus 459 l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~-l~ 537 (830)
+..+++|+.|+|++|++... ....+.++++|+.|++++|.+. ...+..+..+++|+.|+|++|+++.+|.. +.
T Consensus 203 ~~~l~~L~~L~Ls~N~l~~~-----~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 276 (440)
T 3zyj_A 203 LTPLIKLDELDLSGNHLSAI-----RPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLLPHDLFT 276 (440)
T ss_dssp CTTCSSCCEEECTTSCCCEE-----CTTTTTTCTTCCEEECTTCCCC-EECTTSSTTCTTCCEEECTTSCCCCCCTTTTS
T ss_pred cCCCcccCEEECCCCccCcc-----ChhhhccCccCCEEECCCCcee-EEChhhhcCCCCCCEEECCCCCCCccChhHhc
Confidence 77889999999999875432 2334788999999999999997 56677889999999999999999988764 57
Q ss_pred CCCccCEeecccccc
Q 044302 538 GLFNLEYLKLEDCKR 552 (830)
Q Consensus 538 ~L~~L~~L~L~~c~~ 552 (830)
.+++|+.|+|++|+.
T Consensus 277 ~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 277 PLHHLERIHLHHNPW 291 (440)
T ss_dssp SCTTCCEEECCSSCE
T ss_pred cccCCCEEEcCCCCc
Confidence 899999999999873
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.88 E-value=2e-21 Score=218.94 Aligned_cols=240 Identities=24% Similarity=0.236 Sum_probs=178.7
Q ss_pred EeecccccccccccchhcccCCcEEeccCCCCCCCCccccccCccCcEEeecCCCCCCcCCc-ccCCCCCcEEEecCCcc
Q 044302 303 ELFLDETDIKEMPLSIEHLSGLILLTLKYCKNLSSLPVTISSLKCLRTLKLSGCSKLKKFPQ-IVGMEGLSELYLDGTSI 381 (830)
Q Consensus 303 ~L~L~~~~i~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~L~~~~i 381 (830)
.++..+..++.+|..+. ++|+.|+|++|......+..+..+++|+.|++++|......+. +.++++|+.|+|++|.+
T Consensus 58 ~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l 135 (452)
T 3zyi_A 58 KVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135 (452)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence 44455555555555432 4666666666666655566667777777777777665554433 55677777777777777
Q ss_pred cccCcc-cCCCCCccEEecCCccCcccccccccCCCCCCEEeccCCCCCCccCc-ccCCCCCccEEecCCCcccCCCccc
Q 044302 382 TEVPSS-IELLPGIELLNLNDCKNLVRLPRSINGLKALKTLSLSGCCKLENVPD-TLGQVESLEELDISGTATRRPPCSI 459 (830)
Q Consensus 382 ~~l~~~-~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~-~l~~l~~L~~L~L~~n~i~~l~~~l 459 (830)
+.+|.. +..+++|+.|+|++|......+..+..+++|+.|++++|+.+..++. .+..+++|++|++++|.+..+| .+
T Consensus 136 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~ 214 (452)
T 3zyi_A 136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NL 214 (452)
T ss_dssp SBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CC
T ss_pred CccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cc
Confidence 777654 67788888888888877665566778888888888888777766654 5788888899999988888876 47
Q ss_pred ccCCCCcEEEcCCCCCCCCCCccccCCCCCCCCccCeecCCCCCCCCCccccccCCCCCCCEEeCCCCCCcccCcc-cCC
Q 044302 460 FHMKNLKTLSFSGCNGPPSTASSLMLPSLSGLCSLTKLDLSDCGLGEGAILSDIGNLHSLKALYLSENNFVTLPAS-ISG 538 (830)
Q Consensus 460 ~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~-l~~ 538 (830)
..+++|+.|+|++|++... ....+.++++|+.|++++|.+. ...+..+..+++|+.|+|++|+++.+|.. +..
T Consensus 215 ~~l~~L~~L~Ls~N~l~~~-----~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 288 (452)
T 3zyi_A 215 TPLVGLEELEMSGNHFPEI-----RPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLSSLPHDLFTP 288 (452)
T ss_dssp TTCTTCCEEECTTSCCSEE-----CGGGGTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCSCCCTTSSTT
T ss_pred cccccccEEECcCCcCccc-----CcccccCccCCCEEEeCCCcCc-eECHHHhcCCCCCCEEECCCCcCCccChHHhcc
Confidence 7788899999998875432 2234778889999999999887 55677788999999999999999988754 578
Q ss_pred CCccCEeeccccc
Q 044302 539 LFNLEYLKLEDCK 551 (830)
Q Consensus 539 L~~L~~L~L~~c~ 551 (830)
+++|++|+|++|+
T Consensus 289 l~~L~~L~L~~Np 301 (452)
T 3zyi_A 289 LRYLVELHLHHNP 301 (452)
T ss_dssp CTTCCEEECCSSC
T ss_pred ccCCCEEEccCCC
Confidence 9999999999986
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.87 E-value=2.6e-23 Score=222.61 Aligned_cols=240 Identities=16% Similarity=0.074 Sum_probs=142.4
Q ss_pred cccCCcEEeccCCCCCCCCccccccCccCcEEeecCCCCCCcCCcccCCCCCcEEEecCCcccccCcccCCCCCccEEec
Q 044302 320 HLSGLILLTLKYCKNLSSLPVTISSLKCLRTLKLSGCSKLKKFPQIVGMEGLSELYLDGTSITEVPSSIELLPGIELLNL 399 (830)
Q Consensus 320 ~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L 399 (830)
.+++|+.|++++|......|..+..+++|++|++++|......+ +..+++|+.|++++|.++.++. .++|+.|++
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~l 106 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHA 106 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEE----CTTCCEEEC
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccC----CCCcCEEEC
Confidence 34455555555555555444555555556666665555443332 5556666666666666665542 266666666
Q ss_pred CCccCcccccccccCCCCCCEEeccCCCCCCccCcccCCCCCccEEecCCCcccCCC-ccc-ccCCCCcEEEcCCCCCCC
Q 044302 400 NDCKNLVRLPRSINGLKALKTLSLSGCCKLENVPDTLGQVESLEELDISGTATRRPP-CSI-FHMKNLKTLSFSGCNGPP 477 (830)
Q Consensus 400 ~~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~n~i~~l~-~~l-~~l~~L~~L~L~~~~~~~ 477 (830)
++|......+. .+++|++|++++|......+..++.+++|++|++++|.+..++ ..+ ..+++|++|++++|.+..
T Consensus 107 ~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 183 (317)
T 3o53_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (317)
T ss_dssp CSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc
Confidence 66665444332 2556677777766666655666666677777777777666442 333 246777777777776432
Q ss_pred CCCccccCCCCCCCCccCeecCCCCCCCCCccccccCCCCCCCEEeCCCCCCcccCcccCCCCccCEeeccccccc-ccc
Q 044302 478 STASSLMLPSLSGLCSLTKLDLSDCGLGEGAILSDIGNLHSLKALYLSENNFVTLPASISGLFNLEYLKLEDCKRL-QSL 556 (830)
Q Consensus 478 ~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~c~~l-~~l 556 (830)
++....+++|++|++++|.+.. ++..+..+++|+.|++++|.++.+|..+..+++|+.|++++|+.. ..+
T Consensus 184 -------~~~~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~ 254 (317)
T 3o53_A 184 -------VKGQVVFAKLKTLDLSSNKLAF--MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTL 254 (317)
T ss_dssp -------EECCCCCTTCCEEECCSSCCCE--ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHH
T ss_pred -------cccccccccCCEEECCCCcCCc--chhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCH
Confidence 2333346777777777777752 455577777777777777777777777777777777777777654 233
Q ss_pred CCC---CCCcceeeccCCccccc
Q 044302 557 PQL---PPNVHNVRLNGCASLVT 576 (830)
Q Consensus 557 p~l---p~sL~~L~i~~C~~L~~ 576 (830)
|.. .+.|+.|++.+|..++.
T Consensus 255 ~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 255 RDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHS
T ss_pred HHHHhccccceEEECCCchhccC
Confidence 321 13455555555544443
No 59
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.87 E-value=9.4e-22 Score=214.07 Aligned_cols=268 Identities=19% Similarity=0.203 Sum_probs=148.9
Q ss_pred eEEEecCCCCCCCCCCCCCCceEEEccCCChhhccc-CCCCCCcccEEEccCCCCCCCCC-CCCCCCceeEEeeeCCccc
Q 044302 164 LLVWHQYPLKSLPSNLQLDKIVEFEMCYSRIEELWK-GIKPLNTLKVMKLSHSENLIKTP-NFIEVPNLEVLDLEGCTRL 241 (830)
Q Consensus 164 ~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~-~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~L~~~~~l 241 (830)
..+.+++.++.+|..+. ++|++|++++|.++.++. .+..+++|++|++++|......+ .|.++++|++|++++|..
T Consensus 35 ~c~~~~~~l~~iP~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l- 112 (353)
T 2z80_A 35 ICKGSSGSLNSIPSGLT-EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL- 112 (353)
T ss_dssp EEECCSTTCSSCCTTCC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-
T ss_pred EeeCCCCCccccccccc-ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC-
Confidence 35556666666666542 367777777777776654 56667777777777765443333 366677777777776533
Q ss_pred cccccc-ccCCCCccEEecCCCCCCccCCc--ccc-cCcccEEeccCcc-cccccCCCCCccccceEeeccccccccc-c
Q 044302 242 REIHSS-LVRHNKLILLNLKGCTSLTTLPG--EIF-MKSLKTLVLSGCL-KLRKFPHVGGSMECLQELFLDETDIKEM-P 315 (830)
Q Consensus 242 ~~~~~~-l~~l~~L~~L~L~~c~~l~~lp~--~~~-l~~L~~L~L~~~~-~~~~~~~~~~~l~~L~~L~L~~~~i~~l-~ 315 (830)
..++.. ++++++|++|++++ +.++.+|. .+. +++|++|++++|. .....+..++.+++|++|++++|.+..+ |
T Consensus 113 ~~~~~~~~~~l~~L~~L~L~~-n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 191 (353)
T 2z80_A 113 SNLSSSWFKPLSSLTFLNLLG-NPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP 191 (353)
T ss_dssp SSCCHHHHTTCTTCSEEECTT-CCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred CcCCHhHhCCCccCCEEECCC-CCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCH
Confidence 334433 66677777777776 45556655 222 6667777776664 3333345566666666666666666644 4
Q ss_pred cchhcccCCcEEeccCCCCCCCCccccccCccCcEEeecCCCCCCcCCcccCCCCCcEEEecCCcccccCcccCCCCCcc
Q 044302 316 LSIEHLSGLILLTLKYCKNLSSLPVTISSLKCLRTLKLSGCSKLKKFPQIVGMEGLSELYLDGTSITEVPSSIELLPGIE 395 (830)
Q Consensus 316 ~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~ 395 (830)
..+..+++|++|++++|.........+..+++|+.|++++|......+.. + ......+.++
T Consensus 192 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~------------------l-~~~~~~~~l~ 252 (353)
T 2z80_A 192 KSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSE------------------L-STGETNSLIK 252 (353)
T ss_dssp TTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-------------------------CCCCCC
T ss_pred HHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccc------------------c-ccccccchhh
Confidence 45555555555555555542222222333555555555554433211110 0 0012233444
Q ss_pred EEecCCccCcc----cccccccCCCCCCEEeccCCCCCCccCcc-cCCCCCccEEecCCCcccC
Q 044302 396 LLNLNDCKNLV----RLPRSINGLKALKTLSLSGCCKLENVPDT-LGQVESLEELDISGTATRR 454 (830)
Q Consensus 396 ~L~L~~~~~l~----~l~~~~~~l~~L~~L~L~~~~~l~~~~~~-l~~l~~L~~L~L~~n~i~~ 454 (830)
.++++++.... .+|..+..+++|+.|++++|... .+|.. ++.+++|++|++++|.+..
T Consensus 253 ~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 253 KFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp EEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccC
Confidence 45554444332 34555666777777777776655 34433 4677777777777777654
No 60
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.87 E-value=1.3e-20 Score=217.94 Aligned_cols=258 Identities=21% Similarity=0.221 Sum_probs=194.3
Q ss_pred cCcceEEEecCCCCCCCCCCCCCCceEEEccCCChhhcccCCCCCCcccEEEccCCCCCCCCCCCCCCCceeEEeeeCCc
Q 044302 160 NKLRLLVWHQYPLKSLPSNLQLDKIVEFEMCYSRIEELWKGIKPLNTLKVMKLSHSENLIKTPNFIEVPNLEVLDLEGCT 239 (830)
Q Consensus 160 ~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~ 239 (830)
..++.|+++++.++.+|..+. ++|++|++++|.|+.+|. .+++|++|+|++|.. ..+|. .+++|++|++++|
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l-~~lp~--~l~~L~~L~Ls~N- 111 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQL-TSLPV--LPPGLLELSIFSN- 111 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCC-SCCCC--CCTTCCEEEECSC-
T ss_pred CCCcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcC-CcCCC--CCCCCCEEECcCC-
Confidence 468999999999999998775 799999999999999886 578899999999874 34554 6788899999885
Q ss_pred ccccccccccCCCCccEEecCCCCCCccCCcccccCcccEEeccCcccccccCCCCCccccceEeecccccccccccchh
Q 044302 240 RLREIHSSLVRHNKLILLNLKGCTSLTTLPGEIFMKSLKTLVLSGCLKLRKFPHVGGSMECLQELFLDETDIKEMPLSIE 319 (830)
Q Consensus 240 ~l~~~~~~l~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~l~ 319 (830)
.+..+|. .+++|+.|++++ +.++.+|.. +++|++|++++|.+.. +|. .+.+|+.|++++|.++.+|
T Consensus 112 ~l~~l~~---~l~~L~~L~L~~-N~l~~lp~~--l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l~---- 177 (622)
T 3g06_A 112 PLTHLPA---LPSGLCKLWIFG-NQLTSLPVL--PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTSLP---- 177 (622)
T ss_dssp CCCCCCC---CCTTCCEEECCS-SCCSCCCCC--CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCC----
T ss_pred cCCCCCC---CCCCcCEEECCC-CCCCcCCCC--CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCCCc----
Confidence 4555555 567788888887 456666653 3666666666664432 222 2344555555555555544
Q ss_pred cccCCcEEeccCCCCCCCCccccccCccCcEEeecCCCCCCcCCcccCCCCCcEEEecCCcccccCcccCCCCCccEEec
Q 044302 320 HLSGLILLTLKYCKNLSSLPVTISSLKCLRTLKLSGCSKLKKFPQIVGMEGLSELYLDGTSITEVPSSIELLPGIELLNL 399 (830)
Q Consensus 320 ~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L 399 (830)
..+++|+.|++++|.... +|. .+++|+.|++++|.++.+|.. +++|+.|++
T Consensus 178 -----------------------~~~~~L~~L~Ls~N~l~~-l~~--~~~~L~~L~L~~N~l~~l~~~---~~~L~~L~L 228 (622)
T 3g06_A 178 -----------------------MLPSGLQELSVSDNQLAS-LPT--LPSELYKLWAYNNRLTSLPAL---PSGLKELIV 228 (622)
T ss_dssp -----------------------CCCTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSSCCCC---CTTCCEEEC
T ss_pred -----------------------ccCCCCcEEECCCCCCCC-CCC--ccchhhEEECcCCcccccCCC---CCCCCEEEc
Confidence 234556666666655432 333 247899999999999999864 589999999
Q ss_pred CCccCcccccccccCCCCCCEEeccCCCCCCccCcccCCCCCccEEecCCCcccCCCcccccCCCCcEEEcCCCCCC
Q 044302 400 NDCKNLVRLPRSINGLKALKTLSLSGCCKLENVPDTLGQVESLEELDISGTATRRPPCSIFHMKNLKTLSFSGCNGP 476 (830)
Q Consensus 400 ~~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~n~i~~l~~~l~~l~~L~~L~L~~~~~~ 476 (830)
++|.... +| ..+++|+.|++++|.+. .+|. .+++|+.|+|++|.+..+|..+..+++|+.|+|++|+..
T Consensus 229 s~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 229 SGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp CSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCC
T ss_pred cCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCC
Confidence 9997654 55 45789999999999665 5665 578999999999999999999999999999999999865
No 61
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.87 E-value=3e-22 Score=213.45 Aligned_cols=240 Identities=19% Similarity=0.249 Sum_probs=146.3
Q ss_pred eEEEecCCCCCCCCCCCCCCceEEEccCCChhhcccC-CCCCCcccEEEccCCCCCCC---CCCCCCCCceeEEeeeCCc
Q 044302 164 LLVWHQYPLKSLPSNLQLDKIVEFEMCYSRIEELWKG-IKPLNTLKVMKLSHSENLIK---TPNFIEVPNLEVLDLEGCT 239 (830)
Q Consensus 164 ~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~-~~~l~~L~~L~L~~~~~~~~---~~~~~~l~~L~~L~L~~~~ 239 (830)
.++++++.++.+|..+ .++|++|++++|.++.+|.. +..+++|++|+|++|..... ...+..+++|++|++++|
T Consensus 11 ~l~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n- 88 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGI-PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN- 88 (306)
T ss_dssp EEECCSSCCSSCCSCC-CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC-
T ss_pred EEEcCCCCcccCCCCC-CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC-
Confidence 3444555555555543 24555555555555555543 45556666666665543211 123344566666666664
Q ss_pred ccccccccccCCCCccEEecCCCCCCccCCc--ccc-cCcccEEeccCcccccccCCCCCccccceEeecccccccc--c
Q 044302 240 RLREIHSSLVRHNKLILLNLKGCTSLTTLPG--EIF-MKSLKTLVLSGCLKLRKFPHVGGSMECLQELFLDETDIKE--M 314 (830)
Q Consensus 240 ~l~~~~~~l~~l~~L~~L~L~~c~~l~~lp~--~~~-l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~--l 314 (830)
.+..++..+..+++|++|++++ +.++.++. .+. +++|++|++++|.+....+..++.+++|++|++++|.+.. +
T Consensus 89 ~i~~l~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 167 (306)
T 2z66_A 89 GVITMSSNFLGLEQLEHLDFQH-SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 167 (306)
T ss_dssp SEEEEEEEEETCTTCCEEECTT-SEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred ccccChhhcCCCCCCCEEECCC-CcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccc
Confidence 3344555566666666666666 34444443 222 6666777776666666666666677777777777777664 5
Q ss_pred ccchhcccCCcEEeccCCCCCCCCccccccCccCcEEeecCCCCCCcCC-cccCCCCCcEEEecCCccccc-CcccCCCC
Q 044302 315 PLSIEHLSGLILLTLKYCKNLSSLPVTISSLKCLRTLKLSGCSKLKKFP-QIVGMEGLSELYLDGTSITEV-PSSIELLP 392 (830)
Q Consensus 315 ~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~L~~~~i~~l-~~~~~~l~ 392 (830)
|..+..+++|+.|++++|......|..+..+++|++|++++|......+ .+..+++|+.|++++|.+... |..+..++
T Consensus 168 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ 247 (306)
T 2z66_A 168 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP 247 (306)
T ss_dssp CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCC
T ss_pred hhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhh
Confidence 6667777777777777776666666667777777777777776555443 255677777777777777743 44566664
Q ss_pred -CccEEecCCccCcc
Q 044302 393 -GIELLNLNDCKNLV 406 (830)
Q Consensus 393 -~L~~L~L~~~~~l~ 406 (830)
+|+.|+|++|+...
T Consensus 248 ~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 248 SSLAFLNLTQNDFAC 262 (306)
T ss_dssp TTCCEEECTTCCEEC
T ss_pred ccCCEEEccCCCeec
Confidence 78888888777654
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.86 E-value=7.9e-21 Score=213.24 Aligned_cols=200 Identities=20% Similarity=0.198 Sum_probs=121.1
Q ss_pred cCcccEEeccCcccccccCCCCCccccceEeeccccccccccc-chhcccCCcEEeccCCCCCCCCccccccCccCcEEe
Q 044302 274 MKSLKTLVLSGCLKLRKFPHVGGSMECLQELFLDETDIKEMPL-SIEHLSGLILLTLKYCKNLSSLPVTISSLKCLRTLK 352 (830)
Q Consensus 274 l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~-~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ 352 (830)
+++|++|+|++|.+....+..+..+++|++|++++|.++.++. .+..+++|+.|++++|......+..+..+++|++|+
T Consensus 87 l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 166 (440)
T 3zyj_A 87 LRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLD 166 (440)
T ss_dssp CSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeC
Confidence 4444444444444433333444555555555555555555444 345555555555555554444444566666666666
Q ss_pred ecCCCCCCcCCc--ccCCCCCcEEEecCCcccccCcccCCCCCccEEecCCccCcccccccccCCCCCCEEeccCCCCCC
Q 044302 353 LSGCSKLKKFPQ--IVGMEGLSELYLDGTSITEVPSSIELLPGIELLNLNDCKNLVRLPRSINGLKALKTLSLSGCCKLE 430 (830)
Q Consensus 353 L~~~~~~~~~~~--~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~ 430 (830)
+++|..+..++. +.++++|+.|++++|.++.+|. +..+++|+.|+|++|......|..+.++++|+.|++++|....
T Consensus 167 l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 245 (440)
T 3zyj_A 167 LGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQV 245 (440)
T ss_dssp CCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred CCCCCCcceeCcchhhcccccCeecCCCCcCccccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeE
Confidence 666655555443 5566777777777777777763 5667777777777776666666677777777777777777666
Q ss_pred ccCcccCCCCCccEEecCCCcccCCCcc-cccCCCCcEEEcCCCC
Q 044302 431 NVPDTLGQVESLEELDISGTATRRPPCS-IFHMKNLKTLSFSGCN 474 (830)
Q Consensus 431 ~~~~~l~~l~~L~~L~L~~n~i~~l~~~-l~~l~~L~~L~L~~~~ 474 (830)
..+..+..+++|++|+|++|.++.++.. +..+++|+.|+|++|+
T Consensus 246 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 246 IERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp ECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred EChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 6666677777777777777777655543 3345555555555554
No 63
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.86 E-value=1e-20 Score=213.14 Aligned_cols=200 Identities=22% Similarity=0.194 Sum_probs=128.1
Q ss_pred cCcccEEeccCcccccccCCCCCccccceEeecccccccccccc-hhcccCCcEEeccCCCCCCCCccccccCccCcEEe
Q 044302 274 MKSLKTLVLSGCLKLRKFPHVGGSMECLQELFLDETDIKEMPLS-IEHLSGLILLTLKYCKNLSSLPVTISSLKCLRTLK 352 (830)
Q Consensus 274 l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~-l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ 352 (830)
+++|++|+|++|.+....+..+..+++|++|++++|.++.++.. +..+++|++|++++|......+..+..+++|+.|+
T Consensus 98 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 177 (452)
T 3zyi_A 98 LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLD 177 (452)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEe
Confidence 44444444444444444444455555555555555555555442 45555566666665555444444566666777777
Q ss_pred ecCCCCCCcCCc--ccCCCCCcEEEecCCcccccCcccCCCCCccEEecCCccCcccccccccCCCCCCEEeccCCCCCC
Q 044302 353 LSGCSKLKKFPQ--IVGMEGLSELYLDGTSITEVPSSIELLPGIELLNLNDCKNLVRLPRSINGLKALKTLSLSGCCKLE 430 (830)
Q Consensus 353 L~~~~~~~~~~~--~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~ 430 (830)
+++|..+..++. +.++++|+.|+|++|.++.+|. +..+++|+.|+|++|.+....|..+.++++|+.|++++|....
T Consensus 178 l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 256 (452)
T 3zyi_A 178 LGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL 256 (452)
T ss_dssp CCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC-CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCE
T ss_pred CCCCCCccccChhhccCCCCCCEEECCCCccccccc-ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCce
Confidence 776666655553 5567777777777777777753 6677778888888877777777777778888888888877777
Q ss_pred ccCcccCCCCCccEEecCCCcccCCCcc-cccCCCCcEEEcCCCC
Q 044302 431 NVPDTLGQVESLEELDISGTATRRPPCS-IFHMKNLKTLSFSGCN 474 (830)
Q Consensus 431 ~~~~~l~~l~~L~~L~L~~n~i~~l~~~-l~~l~~L~~L~L~~~~ 474 (830)
..+..+..+++|+.|+|++|.+..++.. +..+++|+.|+|++|+
T Consensus 257 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 257 IERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred ECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 7777777777777777777777766543 3345666666666554
No 64
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.86 E-value=1.6e-24 Score=253.60 Aligned_cols=271 Identities=18% Similarity=0.147 Sum_probs=151.5
Q ss_pred cCcccEEeccCcccccccCCCCCccccceEeecc-------cccccccccchhcccCCcEE-eccCCCCCCCCccccccC
Q 044302 274 MKSLKTLVLSGCLKLRKFPHVGGSMECLQELFLD-------ETDIKEMPLSIEHLSGLILL-TLKYCKNLSSLPVTISSL 345 (830)
Q Consensus 274 l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~-------~~~i~~l~~~l~~l~~L~~L-~L~~~~~~~~~~~~l~~l 345 (830)
+++|++|++++|.....++..+..+++|++|.++ .+.+..++..+.++++|+.| .+.+.. ...++..+..+
T Consensus 210 ~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~-~~~l~~~~~~~ 288 (594)
T 2p1m_B 210 CPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAV-PAYLPAVYSVC 288 (594)
T ss_dssp CTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCC-GGGGGGGHHHH
T ss_pred CCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccc-hhhHHHHHHhh
Confidence 3555555555553333344444455555555532 33344455556666666666 333221 12334444456
Q ss_pred ccCcEEeecCCCCCCc-CCc-ccCCCCCcEEEecCCccc--ccCcccCCCCCccEEecCCc--------cCccc--cccc
Q 044302 346 KCLRTLKLSGCSKLKK-FPQ-IVGMEGLSELYLDGTSIT--EVPSSIELLPGIELLNLNDC--------KNLVR--LPRS 411 (830)
Q Consensus 346 ~~L~~L~L~~~~~~~~-~~~-~~~l~~L~~L~L~~~~i~--~l~~~~~~l~~L~~L~L~~~--------~~l~~--l~~~ 411 (830)
++|++|++++|..... +.. +..+++|+.|++++| +. .++.....+++|+.|++.+| ..... +...
T Consensus 289 ~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l 367 (594)
T 2p1m_B 289 SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV 367 (594)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHH
T ss_pred CCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHH
Confidence 6777777776662211 111 335667777777766 33 22222345677777777332 22211 1111
Q ss_pred ccCCCCCCEEeccCCCCCCccCcccC-CCCCccEEecC--C----CcccCCCc------ccccCCCCcEEEcCCCCCCCC
Q 044302 412 INGLKALKTLSLSGCCKLENVPDTLG-QVESLEELDIS--G----TATRRPPC------SIFHMKNLKTLSFSGCNGPPS 478 (830)
Q Consensus 412 ~~~l~~L~~L~L~~~~~l~~~~~~l~-~l~~L~~L~L~--~----n~i~~l~~------~l~~l~~L~~L~L~~~~~~~~ 478 (830)
..++++|+.|.+..+......+..+. .+++|+.|+++ + +.++..|. .+..+++|+.|++++ ...
T Consensus 368 ~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~-- 444 (594)
T 2p1m_B 368 SMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLT-- 444 (594)
T ss_dssp HHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCC--
T ss_pred HHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-ccc--
Confidence 23467788886665555443333333 46778888887 3 44443332 245678888888865 211
Q ss_pred CCccccCCCCCC-CCccCeecCCCCCCCCCccccccCCCCCCCEEeCCCCCCcc--cCcccCCCCccCEeecccccc
Q 044302 479 TASSLMLPSLSG-LCSLTKLDLSDCGLGEGAILSDIGNLHSLKALYLSENNFVT--LPASISGLFNLEYLKLEDCKR 552 (830)
Q Consensus 479 ~~~~~~l~~l~~-l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~--lp~~l~~L~~L~~L~L~~c~~ 552 (830)
...++.+.. +++|+.|++++|.+++..+.....++++|+.|+|++|.++. +...+..+++|++|+|++|+.
T Consensus 445 ---~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 445 ---DKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp ---HHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred ---HHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 111222333 77888999988888644343333668899999999998863 223445688999999999975
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.86 E-value=4.5e-22 Score=213.04 Aligned_cols=264 Identities=19% Similarity=0.134 Sum_probs=223.2
Q ss_pred cccEEeccCcccccccCCCCCccccceEeecccccccccc-cchhcccCCcEEeccCCCCCCCCccccccCccCcEEeec
Q 044302 276 SLKTLVLSGCLKLRKFPHVGGSMECLQELFLDETDIKEMP-LSIEHLSGLILLTLKYCKNLSSLPVTISSLKCLRTLKLS 354 (830)
Q Consensus 276 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~-~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~ 354 (830)
+++.++++.+.........+..+++|++|++++|.+..++ ..+..+++|+.|++++|......+ +..+++|++|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 4566677776665555566677889999999999999876 589999999999999998766554 8999999999999
Q ss_pred CCCCCCcCCcccCCCCCcEEEecCCcccccCcccCCCCCccEEecCCccCcccccccccCCCCCCEEeccCCCCCCccCc
Q 044302 355 GCSKLKKFPQIVGMEGLSELYLDGTSITEVPSSIELLPGIELLNLNDCKNLVRLPRSINGLKALKTLSLSGCCKLENVPD 434 (830)
Q Consensus 355 ~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~ 434 (830)
+|.... +...++|+.|++++|.++.++.. .+++|+.|++++|......+..+..+++|++|++++|......+.
T Consensus 89 ~n~l~~----l~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 162 (317)
T 3o53_A 89 NNYVQE----LLVGPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162 (317)
T ss_dssp SSEEEE----EEECTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGG
T ss_pred CCcccc----ccCCCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHH
Confidence 986443 22448999999999999987653 478999999999999888888899999999999999988887776
Q ss_pred cc-CCCCCccEEecCCCcccCCCcccccCCCCcEEEcCCCCCCCCCCccccCCCCCCCCccCeecCCCCCCCCCcccccc
Q 044302 435 TL-GQVESLEELDISGTATRRPPCSIFHMKNLKTLSFSGCNGPPSTASSLMLPSLSGLCSLTKLDLSDCGLGEGAILSDI 513 (830)
Q Consensus 435 ~l-~~l~~L~~L~L~~n~i~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l 513 (830)
.+ ..+++|++|++++|.+..++... .+++|++|++++|++.. ..+.+..+++|++|++++|.+.. +|..+
T Consensus 163 ~~~~~l~~L~~L~L~~N~l~~~~~~~-~l~~L~~L~Ls~N~l~~------l~~~~~~l~~L~~L~L~~N~l~~--l~~~~ 233 (317)
T 3o53_A 163 ELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAF------MGPEFQSAAGVTWISLRNNKLVL--IEKAL 233 (317)
T ss_dssp GGGGGTTTCCEEECTTSCCCEEECCC-CCTTCCEEECCSSCCCE------ECGGGGGGTTCSEEECTTSCCCE--ECTTC
T ss_pred HHhhccCcCCEEECCCCcCccccccc-ccccCCEEECCCCcCCc------chhhhcccCcccEEECcCCcccc--hhhHh
Confidence 66 47899999999999999886443 59999999999998653 22347889999999999999973 78889
Q ss_pred CCCCCCCEEeCCCCCCc--ccCcccCCCCccCEeecccccccccc
Q 044302 514 GNLHSLKALYLSENNFV--TLPASISGLFNLEYLKLEDCKRLQSL 556 (830)
Q Consensus 514 ~~l~~L~~L~L~~n~l~--~lp~~l~~L~~L~~L~L~~c~~l~~l 556 (830)
..+++|+.|++++|.+. .+|..+..+++|+.|++.+|+.++..
T Consensus 234 ~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp CCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred hcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCC
Confidence 99999999999999998 77888899999999999988777654
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.86 E-value=1.6e-22 Score=215.97 Aligned_cols=199 Identities=22% Similarity=0.223 Sum_probs=134.2
Q ss_pred cCccCcEEeecCCCCCCcCCc-c--cCCCCCcEEEecCCcccccCcccCCC-----CCccEEecCCccCcccccccccCC
Q 044302 344 SLKCLRTLKLSGCSKLKKFPQ-I--VGMEGLSELYLDGTSITEVPSSIELL-----PGIELLNLNDCKNLVRLPRSINGL 415 (830)
Q Consensus 344 ~l~~L~~L~L~~~~~~~~~~~-~--~~l~~L~~L~L~~~~i~~l~~~~~~l-----~~L~~L~L~~~~~l~~l~~~~~~l 415 (830)
.+++|++|++++|.....+|. + ..+++|+.|++++|.++.+|..+..+ ++|++|++++|......+..+..+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 345555555555554444433 2 44556666666666666555554444 667777777766666666667777
Q ss_pred CCCCEEeccCCCCCCc--cCccc--CCCCCccEEecCCCcccCCCc---c-cccCCCCcEEEcCCCCCCCCCCccccCCC
Q 044302 416 KALKTLSLSGCCKLEN--VPDTL--GQVESLEELDISGTATRRPPC---S-IFHMKNLKTLSFSGCNGPPSTASSLMLPS 487 (830)
Q Consensus 416 ~~L~~L~L~~~~~l~~--~~~~l--~~l~~L~~L~L~~n~i~~l~~---~-l~~l~~L~~L~L~~~~~~~~~~~~~~l~~ 487 (830)
++|++|++++|..... ++..+ +.+++|++|++++|.+..++. . +..+++|++|++++|++.... ..+.
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~----~~~~ 248 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA----GAPS 248 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC----CCSC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCccc----chhh
Confidence 7777777777765543 22233 677788888888887774432 2 235688888888888755421 1234
Q ss_pred CCCCCccCeecCCCCCCCCCccccccCCCCCCCEEeCCCCCCcccCcccCCCCccCEeeccccc
Q 044302 488 LSGLCSLTKLDLSDCGLGEGAILSDIGNLHSLKALYLSENNFVTLPASISGLFNLEYLKLEDCK 551 (830)
Q Consensus 488 l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~c~ 551 (830)
+..+++|++|++++|.++ .+|..+. ++|++|++++|+++.+|. +..+++|++|+|++|+
T Consensus 249 ~~~l~~L~~L~Ls~N~l~--~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 249 CDWPSQLNSLNLSFTGLK--QVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp CCCCTTCCEEECTTSCCS--SCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCT
T ss_pred hhhcCCCCEEECCCCccC--hhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCC
Confidence 566788999999999886 3676665 889999999999998876 8889999999999986
No 67
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.85 E-value=6.6e-21 Score=200.74 Aligned_cols=218 Identities=20% Similarity=0.212 Sum_probs=136.2
Q ss_pred cEEecCCCCCCccCCcccccCcccEEeccCcccccccCCCCCccccceEeeccccccccc-ccchhcccCCcEEeccCCC
Q 044302 255 ILLNLKGCTSLTTLPGEIFMKSLKTLVLSGCLKLRKFPHVGGSMECLQELFLDETDIKEM-PLSIEHLSGLILLTLKYCK 333 (830)
Q Consensus 255 ~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l-~~~l~~l~~L~~L~L~~~~ 333 (830)
+.++.++ ..++.+|..+ .++|++|++++|.+....+..++.+++|++|++++|.+..+ +..+..+++|++|++++|.
T Consensus 14 ~~~~c~~-~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQ-QGLQAVPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCS-SCCSSCCTTC-CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCc-CCcccCCcCC-CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 3445544 4555555432 45666677766666655556667777777777777777655 4566667777777777776
Q ss_pred -CCCCCccccccCccCcEEeecCCCCCCcCCc-ccCCCCCcEEEecCCcccccCcc-cCCCCCccEEecCCccCcccccc
Q 044302 334 -NLSSLPVTISSLKCLRTLKLSGCSKLKKFPQ-IVGMEGLSELYLDGTSITEVPSS-IELLPGIELLNLNDCKNLVRLPR 410 (830)
Q Consensus 334 -~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~L~~~~~l~~l~~ 410 (830)
.....+..+..+++|++|++++|......+. +..+++|+.|++++|.++.++.. +..+++|+.|++++|......+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 171 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER 171 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHH
Confidence 3333355666777777777777665554443 44566677777777776666543 56666777777776655544444
Q ss_pred cccCCCCCCEEeccCCCCCCccCcccCCCCCccEEecCCCcccCCCc-ccccCCCCcEEEcCCCC
Q 044302 411 SINGLKALKTLSLSGCCKLENVPDTLGQVESLEELDISGTATRRPPC-SIFHMKNLKTLSFSGCN 474 (830)
Q Consensus 411 ~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~n~i~~l~~-~l~~l~~L~~L~L~~~~ 474 (830)
.+..+++|++|++++|......|..+..+++|++|++++|.+..++. .+..+++|+.|++++|+
T Consensus 172 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred HhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 56666666666666666666556666666666666666666665553 24555666666666555
No 68
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.85 E-value=2.4e-21 Score=204.08 Aligned_cols=217 Identities=20% Similarity=0.199 Sum_probs=110.0
Q ss_pred eEEEecCCCCCCCCCCCCCCceEEEccCCChhhcc-cCCCCCCcccEEEccCCCCCCC-CCCCCCCCceeEEeeeCCccc
Q 044302 164 LLVWHQYPLKSLPSNLQLDKIVEFEMCYSRIEELW-KGIKPLNTLKVMKLSHSENLIK-TPNFIEVPNLEVLDLEGCTRL 241 (830)
Q Consensus 164 ~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~-~~~~~l~~L~~L~L~~~~~~~~-~~~~~~l~~L~~L~L~~~~~l 241 (830)
.++.+++.++.+|..+ +++|++|++++|.++.++ ..+..+++|++|++++|..... ...|..+++|++|++++|..+
T Consensus 15 ~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l 93 (285)
T 1ozn_A 15 TTSCPQQGLQAVPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93 (285)
T ss_dssp EEECCSSCCSSCCTTC-CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC
T ss_pred EEEcCcCCcccCCcCC-CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCc
Confidence 3444444444444332 334455555555554443 2344455555555555443222 123445555555555554323
Q ss_pred ccc-cccccCCCCccEEecCCCCCCccCC-cccc-cCcccEEeccCcccccccCCCCCccccceEeeccccccccccc-c
Q 044302 242 REI-HSSLVRHNKLILLNLKGCTSLTTLP-GEIF-MKSLKTLVLSGCLKLRKFPHVGGSMECLQELFLDETDIKEMPL-S 317 (830)
Q Consensus 242 ~~~-~~~l~~l~~L~~L~L~~c~~l~~lp-~~~~-l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~-~ 317 (830)
..+ +..+..+++|++|++++| .+..++ ..+. +++|++|++++|.+....+..++.+++|+.|++++|.++.++. .
T Consensus 94 ~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 172 (285)
T 1ozn_A 94 RSVDPATFHGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA 172 (285)
T ss_dssp CCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred cccCHHHhcCCcCCCEEECCCC-cCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHH
Confidence 333 344455555555555552 233332 2222 5555555555555444444445555666666666666655554 3
Q ss_pred hhcccCCcEEeccCCCCCCCCccccccCccCcEEeecCCCCCCcCCc-ccCCCCCcEEEecCCccc
Q 044302 318 IEHLSGLILLTLKYCKNLSSLPVTISSLKCLRTLKLSGCSKLKKFPQ-IVGMEGLSELYLDGTSIT 382 (830)
Q Consensus 318 l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~L~~~~i~ 382 (830)
+..+++|+.|++++|......|..+..+++|+.|++++|......+. +..+++|+.|++++|.+.
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred hcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 55566666666666665555555666666666666666655443333 445666666666666655
No 69
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.85 E-value=1.2e-23 Score=246.06 Aligned_cols=344 Identities=16% Similarity=0.122 Sum_probs=194.1
Q ss_pred CCceeEEeeeCCccccc--ccccccCCCCccEEecCCCCCCcc-----CCccc-ccCcccEEeccCcc--cc-cccCCCC
Q 044302 227 VPNLEVLDLEGCTRLRE--IHSSLVRHNKLILLNLKGCTSLTT-----LPGEI-FMKSLKTLVLSGCL--KL-RKFPHVG 295 (830)
Q Consensus 227 l~~L~~L~L~~~~~l~~--~~~~l~~l~~L~~L~L~~c~~l~~-----lp~~~-~l~~L~~L~L~~~~--~~-~~~~~~~ 295 (830)
+++|++|++++|..+.. ++..+.++++|++|++++|. ++. ++... .+++|++|++++|. .. ..++...
T Consensus 129 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~ 207 (594)
T 2p1m_B 129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLV 207 (594)
T ss_dssp CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHH
T ss_pred CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHH
Confidence 45555555555533332 33333455566666666543 221 11111 15566666666654 11 1122223
Q ss_pred CccccceEeecccc-cccccccchhcccCCcEEeccCCCCC------CCCccccccCccCcEE-eecCCCCCCcCCcc-c
Q 044302 296 GSMECLQELFLDET-DIKEMPLSIEHLSGLILLTLKYCKNL------SSLPVTISSLKCLRTL-KLSGCSKLKKFPQI-V 366 (830)
Q Consensus 296 ~~l~~L~~L~L~~~-~i~~l~~~l~~l~~L~~L~L~~~~~~------~~~~~~l~~l~~L~~L-~L~~~~~~~~~~~~-~ 366 (830)
..+++|+.|+++++ .+..++..+..+++|+.|++..+... ..++..+..+++|+.| .+.+... ..++.+ .
T Consensus 208 ~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~ 286 (594)
T 2p1m_B 208 TRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP-AYLPAVYS 286 (594)
T ss_dssp HHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCG-GGGGGGHH
T ss_pred HhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccch-hhHHHHHH
Confidence 44678888888877 55567777788888888887766431 1234456778888887 3433221 233332 2
Q ss_pred CCCCCcEEEecCCcccc--cCcccCCCCCccEEecCCccCcccccccccCCCCCCEEeccCC--------CCCCc-cCcc
Q 044302 367 GMEGLSELYLDGTSITE--VPSSIELLPGIELLNLNDCKNLVRLPRSINGLKALKTLSLSGC--------CKLEN-VPDT 435 (830)
Q Consensus 367 ~l~~L~~L~L~~~~i~~--l~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~L~~~--------~~l~~-~~~~ 435 (830)
.+++|+.|++++|.++. ++..+..+++|+.|++.+|.....++.....+++|++|++++| ..... ....
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~ 366 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVS 366 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHH
T ss_pred hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHH
Confidence 46788888888887652 3334567788888888877322233333445788888888543 22211 1111
Q ss_pred -cCCCCCccEEecCCCcccC-CCcccc-cCCCCcEEEcC-----CCCCCCCCCccccCCC-CCCCCccCeecCCCCCCCC
Q 044302 436 -LGQVESLEELDISGTATRR-PPCSIF-HMKNLKTLSFS-----GCNGPPSTASSLMLPS-LSGLCSLTKLDLSDCGLGE 506 (830)
Q Consensus 436 -l~~l~~L~~L~L~~n~i~~-l~~~l~-~l~~L~~L~L~-----~~~~~~~~~~~~~l~~-l~~l~~L~~L~Ls~~~l~~ 506 (830)
...+++|++|.+..+.++. ....+. .+++|+.|++. +|...........++. +.++++|+.|++++ .+++
T Consensus 367 l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~ 445 (594)
T 2p1m_B 367 VSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTD 445 (594)
T ss_dssp HHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCH
T ss_pred HHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccH
Confidence 1246788888777777652 122232 47888888887 3332221110001111 45677888888876 5553
Q ss_pred CccccccCCCCCCCEEeCCCCCCcc--cCcccCCCCccCEeeccccccccc----cCCCCCCcceeeccCCcc
Q 044302 507 GAILSDIGNLHSLKALYLSENNFVT--LPASISGLFNLEYLKLEDCKRLQS----LPQLPPNVHNVRLNGCAS 573 (830)
Q Consensus 507 ~~~~~~l~~l~~L~~L~L~~n~l~~--lp~~l~~L~~L~~L~L~~c~~l~~----lp~lp~sL~~L~i~~C~~ 573 (830)
..+......+++|+.|+|++|.++. ++.....+++|++|+|++|+.-.. +..-.++|+.|++++|+.
T Consensus 446 ~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 446 KVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 2222222237888888888888762 222225578888888888875211 111125788888888864
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=1.9e-20 Score=212.12 Aligned_cols=216 Identities=16% Similarity=0.065 Sum_probs=175.3
Q ss_pred ccCCcEEeccCCCCCCCCccccccCccCcEEeecCCCCCCcCCcccCCCCCcEEEecCCcccccCcccCCCCCccEEecC
Q 044302 321 LSGLILLTLKYCKNLSSLPVTISSLKCLRTLKLSGCSKLKKFPQIVGMEGLSELYLDGTSITEVPSSIELLPGIELLNLN 400 (830)
Q Consensus 321 l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~ 400 (830)
+++|+.|+|++|......|..+..+++|++|++++|......+ +..+++|+.|+|++|.++.+|.. ++|+.|+++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~L~ 107 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVG----PSIETLHAA 107 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEEC----TTCCEEECC
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCC----CCcCEEECc
Confidence 3477888888877777777778888888888888877655444 77788888888888888877643 889999999
Q ss_pred CccCcccccccccCCCCCCEEeccCCCCCCccCcccCCCCCccEEecCCCcccC-CCcccc-cCCCCcEEEcCCCCCCCC
Q 044302 401 DCKNLVRLPRSINGLKALKTLSLSGCCKLENVPDTLGQVESLEELDISGTATRR-PPCSIF-HMKNLKTLSFSGCNGPPS 478 (830)
Q Consensus 401 ~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~n~i~~-l~~~l~-~l~~L~~L~L~~~~~~~~ 478 (830)
+|......+. .+++|+.|++++|......|..++.+++|+.|++++|.+.. .|..+. .+++|++|+|++|.+..
T Consensus 108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~- 183 (487)
T 3oja_A 108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD- 183 (487)
T ss_dssp SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-
T ss_pred CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc-
Confidence 8887766553 46789999999998888888888889999999999999885 455555 68999999999988653
Q ss_pred CCccccCCCCCCCCccCeecCCCCCCCCCccccccCCCCCCCEEeCCCCCCcccCcccCCCCccCEeeccccccc
Q 044302 479 TASSLMLPSLSGLCSLTKLDLSDCGLGEGAILSDIGNLHSLKALYLSENNFVTLPASISGLFNLEYLKLEDCKRL 553 (830)
Q Consensus 479 ~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~c~~l 553 (830)
++....+++|+.|+|++|.++. ++..+..+++|+.|+|++|.++.+|..+..+++|+.|++++|+..
T Consensus 184 ------~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 184 ------VKGQVVFAKLKTLDLSSNKLAF--MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp ------EECCCCCTTCCEEECCSSCCCE--ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred ------ccccccCCCCCEEECCCCCCCC--CCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence 2445568899999999999973 666688999999999999999999999999999999999998754
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.83 E-value=1.1e-21 Score=209.43 Aligned_cols=203 Identities=19% Similarity=0.144 Sum_probs=118.6
Q ss_pred cCcccEEeccCcccccccCCCC--CccccceEeecccccccccccchhcc-----cCCcEEeccCCCCCCCCccccccCc
Q 044302 274 MKSLKTLVLSGCLKLRKFPHVG--GSMECLQELFLDETDIKEMPLSIEHL-----SGLILLTLKYCKNLSSLPVTISSLK 346 (830)
Q Consensus 274 l~~L~~L~L~~~~~~~~~~~~~--~~l~~L~~L~L~~~~i~~l~~~l~~l-----~~L~~L~L~~~~~~~~~~~~l~~l~ 346 (830)
+++|++|++++|.+....|..+ +.+++|++|++++|.+..+|..+..+ ++|++|++++|......+..++.++
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~ 173 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence 4555555555555555555543 66666666666666666666555555 6666666666666555555666666
Q ss_pred cCcEEeecCCCCCCcCCcccCCCCCcEEEecCCcccccCccc--CCCCCccEEecCCccCcc--ccc-ccccCCCCCCEE
Q 044302 347 CLRTLKLSGCSKLKKFPQIVGMEGLSELYLDGTSITEVPSSI--ELLPGIELLNLNDCKNLV--RLP-RSINGLKALKTL 421 (830)
Q Consensus 347 ~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~--~~l~~L~~L~L~~~~~l~--~l~-~~~~~l~~L~~L 421 (830)
+|++|++++|...+..+ ++..+ ..+++|+.|++++|.... .++ ..+..+++|++|
T Consensus 174 ~L~~L~Ls~N~l~~~~~--------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L 233 (312)
T 1wwl_A 174 ALSTLDLSDNPELGERG--------------------LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGL 233 (312)
T ss_dssp SCCEEECCSCTTCHHHH--------------------HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEE
T ss_pred CCCEEECCCCCcCcchH--------------------HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEE
Confidence 66666666555433210 12222 444555555555554431 111 223455666666
Q ss_pred eccCCCCCCccC-cccCCCCCccEEecCCCcccCCCcccccCCCCcEEEcCCCCCCCCCCccccCCCCCCCCccCeecCC
Q 044302 422 SLSGCCKLENVP-DTLGQVESLEELDISGTATRRPPCSIFHMKNLKTLSFSGCNGPPSTASSLMLPSLSGLCSLTKLDLS 500 (830)
Q Consensus 422 ~L~~~~~l~~~~-~~l~~l~~L~~L~L~~n~i~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls 500 (830)
++++|......| ..+..+++|++|++++|.++.+|..+. ++|++|++++|++.. +|.+..+++|++|+++
T Consensus 234 ~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~-------~p~~~~l~~L~~L~L~ 304 (312)
T 1wwl_A 234 DLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDR-------NPSPDELPQVGNLSLK 304 (312)
T ss_dssp ECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCS-------CCCTTTSCEEEEEECT
T ss_pred ECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCC-------ChhHhhCCCCCEEecc
Confidence 666666555443 344556677777777777777766665 677777777776542 2346677778888888
Q ss_pred CCCCC
Q 044302 501 DCGLG 505 (830)
Q Consensus 501 ~~~l~ 505 (830)
+|+++
T Consensus 305 ~N~l~ 309 (312)
T 1wwl_A 305 GNPFL 309 (312)
T ss_dssp TCTTT
T ss_pred CCCCC
Confidence 87775
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.82 E-value=7.3e-21 Score=215.63 Aligned_cols=237 Identities=20% Similarity=0.137 Sum_probs=169.1
Q ss_pred ccceEeecccccccccc-cchhcccCCcEEeccCCCCCCCCccccccCccCcEEeecCCCCCCcCCcccCCCCCcEEEec
Q 044302 299 ECLQELFLDETDIKEMP-LSIEHLSGLILLTLKYCKNLSSLPVTISSLKCLRTLKLSGCSKLKKFPQIVGMEGLSELYLD 377 (830)
Q Consensus 299 ~~L~~L~L~~~~i~~l~-~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~ 377 (830)
++|+.|++++|.+..++ ..+..+++|++|+|++|......| +..+++|++|++++|.... + ...++|+.|+++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l---~~~~~L~~L~L~ 107 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-L---LVGPSIETLHAA 107 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE-E---EECTTCCEEECC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC-C---CCCCCcCEEECc
Confidence 34444555555444433 244555555555555554433332 5555666666666654322 1 123677788888
Q ss_pred CCcccccCcccCCCCCccEEecCCccCcccccccccCCCCCCEEeccCCCCCCccCcccC-CCCCccEEecCCCcccCCC
Q 044302 378 GTSITEVPSSIELLPGIELLNLNDCKNLVRLPRSINGLKALKTLSLSGCCKLENVPDTLG-QVESLEELDISGTATRRPP 456 (830)
Q Consensus 378 ~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~l~-~l~~L~~L~L~~n~i~~l~ 456 (830)
+|.+..++.. .+++|+.|+|++|......|..+..+++|+.|++++|......|..+. .+++|+.|+|++|.+..++
T Consensus 108 ~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~ 185 (487)
T 3oja_A 108 NNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK 185 (487)
T ss_dssp SSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE
T ss_pred CCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc
Confidence 8887766543 467888888888888777777788888888888888888777777665 6888888888888888775
Q ss_pred cccccCCCCcEEEcCCCCCCCCCCccccCCCCCCCCccCeecCCCCCCCCCccccccCCCCCCCEEeCCCCCCc--ccCc
Q 044302 457 CSIFHMKNLKTLSFSGCNGPPSTASSLMLPSLSGLCSLTKLDLSDCGLGEGAILSDIGNLHSLKALYLSENNFV--TLPA 534 (830)
Q Consensus 457 ~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~--~lp~ 534 (830)
. ...+++|+.|+|++|.+.. ..+.+..+++|+.|++++|.++. +|..+..+++|+.|++++|.+. .+|.
T Consensus 186 ~-~~~l~~L~~L~Ls~N~l~~------~~~~~~~l~~L~~L~Ls~N~l~~--lp~~l~~l~~L~~L~l~~N~l~c~~~~~ 256 (487)
T 3oja_A 186 G-QVVFAKLKTLDLSSNKLAF------MGPEFQSAAGVTWISLRNNKLVL--IEKALRFSQNLEHFDLRGNGFHCGTLRD 256 (487)
T ss_dssp C-CCCCTTCCEEECCSSCCCE------ECGGGGGGTTCSEEECTTSCCCE--ECTTCCCCTTCCEEECTTCCBCHHHHHH
T ss_pred c-cccCCCCCEEECCCCCCCC------CCHhHcCCCCccEEEecCCcCcc--cchhhccCCCCCEEEcCCCCCcCcchHH
Confidence 4 3358889999999888653 23347788999999999999973 7888999999999999999998 7888
Q ss_pred ccCCCCccCEeecccccc
Q 044302 535 SISGLFNLEYLKLEDCKR 552 (830)
Q Consensus 535 ~l~~L~~L~~L~L~~c~~ 552 (830)
.+..++.|+.|++..+..
T Consensus 257 ~~~~l~~L~~l~~~~~~~ 274 (487)
T 3oja_A 257 FFSKNQRVQTVAKQTVKK 274 (487)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCCCcEEecccccc
Confidence 888999999998875443
No 73
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.80 E-value=1.3e-18 Score=183.10 Aligned_cols=201 Identities=21% Similarity=0.202 Sum_probs=127.0
Q ss_pred CCccccceEeecccccccccccchhcccCCcEEeccCCCCCCCCccccccCccCcEEeecCCCCCCcCCcccCCCCCcEE
Q 044302 295 GGSMECLQELFLDETDIKEMPLSIEHLSGLILLTLKYCKNLSSLPVTISSLKCLRTLKLSGCSKLKKFPQIVGMEGLSEL 374 (830)
Q Consensus 295 ~~~l~~L~~L~L~~~~i~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L 374 (830)
+++++++++++++++.++.+|..+. ++++.|++++|......+..+..+++|+.|++++|.... ++....+++|+.|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L 82 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVDGTLPVLGTL 82 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECCSCCTTCCEE
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCCCCCCcCCEE
Confidence 4456677777777777777776553 567777777776655555666666666666666654332 2222344555555
Q ss_pred EecCCcccccCcccCCCCCccEEecCCccCcccccccccCCCCCCEEeccCCCCCCccCcccCCCCCccEEecCCCcccC
Q 044302 375 YLDGTSITEVPSSIELLPGIELLNLNDCKNLVRLPRSINGLKALKTLSLSGCCKLENVPDTLGQVESLEELDISGTATRR 454 (830)
Q Consensus 375 ~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~n~i~~ 454 (830)
++++|.++.+|. .+..+++|++|++++|......+..+..+++|++|++++|.+..
T Consensus 83 ~Ls~N~l~~l~~------------------------~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ 138 (290)
T 1p9a_G 83 DLSHNQLQSLPL------------------------LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138 (290)
T ss_dssp ECCSSCCSSCCC------------------------CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC
T ss_pred ECCCCcCCcCch------------------------hhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCc
Confidence 555555554444 44455555555555555555555666777777777777777765
Q ss_pred CCcccccCCCCcEEEcCCCCCCCCCCccccCCCCCCCCccCeecCCCCCCCCCccccccCCCCCCCEEeCCCCCCcccCc
Q 044302 455 PPCSIFHMKNLKTLSFSGCNGPPSTASSLMLPSLSGLCSLTKLDLSDCGLGEGAILSDIGNLHSLKALYLSENNFVTLPA 534 (830)
Q Consensus 455 l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~ 534 (830)
+|... +..+++|+.|++++|++. ...+..+..+++|+.|+|++|.++.+|.
T Consensus 139 ~~~~~----------------------------~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~ip~ 189 (290)
T 1p9a_G 139 LPPGL----------------------------LTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIPK 189 (290)
T ss_dssp CCTTT----------------------------TTTCTTCCEEECTTSCCS-CCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred cChhh----------------------------cccccCCCEEECCCCcCC-ccCHHHhcCcCCCCEEECCCCcCCccCh
Confidence 55322 223344444555555554 2233446778888888898888888998
Q ss_pred ccCCCCccCEeeccccc
Q 044302 535 SISGLFNLEYLKLEDCK 551 (830)
Q Consensus 535 ~l~~L~~L~~L~L~~c~ 551 (830)
.+..+++|+.|+|++|+
T Consensus 190 ~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 190 GFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp TTTTTCCCSEEECCSCC
T ss_pred hhcccccCCeEEeCCCC
Confidence 88888889999999886
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.78 E-value=2.5e-18 Score=180.07 Aligned_cols=198 Identities=18% Similarity=0.173 Sum_probs=92.7
Q ss_pred CceEEEccCCChhhccc-CCCCCCcccEEEccCCCCCCCCC-CCCCCCceeEEeeeCCcccccccccccCCCCccEEecC
Q 044302 183 KIVEFEMCYSRIEELWK-GIKPLNTLKVMKLSHSENLIKTP-NFIEVPNLEVLDLEGCTRLREIHSSLVRHNKLILLNLK 260 (830)
Q Consensus 183 ~L~~L~L~~n~i~~l~~-~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~ 260 (830)
+|++|++++|.++.++. .+..+++|++|++++|......+ .|..+++|++|++++|......+..+..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 34444444444444332 34444444444444443222221 24444444444444433322223344444444444444
Q ss_pred CCCCCccCCc-ccc-cCcccEEeccCccccc-ccCCCCCccccceEeeccccccccccc-chhcccCCc----EEeccCC
Q 044302 261 GCTSLTTLPG-EIF-MKSLKTLVLSGCLKLR-KFPHVGGSMECLQELFLDETDIKEMPL-SIEHLSGLI----LLTLKYC 332 (830)
Q Consensus 261 ~c~~l~~lp~-~~~-l~~L~~L~L~~~~~~~-~~~~~~~~l~~L~~L~L~~~~i~~l~~-~l~~l~~L~----~L~L~~~ 332 (830)
+ +.+..++. .+. +++|++|++++|.+.. .+|..++.+++|+.|++++|.++.++. .+..+++|+ .|++++|
T Consensus 109 ~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 109 E-TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp T-SCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred C-CCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 4 22333332 122 4455555555544433 234555555555556665555554432 444444444 5566665
Q ss_pred CCCCCCccccccCccCcEEeecCCCCCCcCCc-ccCCCCCcEEEecCCccc
Q 044302 333 KNLSSLPVTISSLKCLRTLKLSGCSKLKKFPQ-IVGMEGLSELYLDGTSIT 382 (830)
Q Consensus 333 ~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~L~~~~i~ 382 (830)
......+..+ ...+|+.|++++|......+. +..+++|+.|++++|.+.
T Consensus 188 ~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 188 PMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred cccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 5443333222 233566666666664443333 345667777777777665
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.78 E-value=5.3e-18 Score=177.57 Aligned_cols=220 Identities=19% Similarity=0.131 Sum_probs=141.7
Q ss_pred EEccCCChhhcccCCCCCCcccEEEccCCCCCCCCC-CCCCCCceeEEeeeCCcccccccccccCCCCccEEecCCCCCC
Q 044302 187 FEMCYSRIEELWKGIKPLNTLKVMKLSHSENLIKTP-NFIEVPNLEVLDLEGCTRLREIHSSLVRHNKLILLNLKGCTSL 265 (830)
Q Consensus 187 L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~c~~l 265 (830)
.+..+..+..+|..+. ++|++|++++|......+ .|.++++|++|++++|......+..+..+++|++|++++ +.+
T Consensus 12 ~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l 88 (276)
T 2z62_A 12 YQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG-NPI 88 (276)
T ss_dssp EECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT-CCC
T ss_pred EEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCC-Ccc
Confidence 4455556666776554 579999999987554444 688899999999998755444445788888888888888 445
Q ss_pred ccCCcc-cc-cCcccEEeccCcccccccCCCCCccccceEeecccccccc--cccchhcccCCcEEeccCCCCCCCCccc
Q 044302 266 TTLPGE-IF-MKSLKTLVLSGCLKLRKFPHVGGSMECLQELFLDETDIKE--MPLSIEHLSGLILLTLKYCKNLSSLPVT 341 (830)
Q Consensus 266 ~~lp~~-~~-l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~--l~~~l~~l~~L~~L~L~~~~~~~~~~~~ 341 (830)
+.++.. +. +++|++|++++|.+....+..++.+++|++|++++|.+.. +|..+..+++|+.|++++|......+..
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 168 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHH
Confidence 555533 33 7788888888777666655567777777777777777775 5667777777777777777666555555
Q ss_pred cccCccCcEEeecCCCCCCcCCcccCCCCCc-EEEecCCcccccCcccCCCCCccEEecCCccCcccccccccCCCCCCE
Q 044302 342 ISSLKCLRTLKLSGCSKLKKFPQIVGMEGLS-ELYLDGTSITEVPSSIELLPGIELLNLNDCKNLVRLPRSINGLKALKT 420 (830)
Q Consensus 342 l~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~-~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~ 420 (830)
+..+++|+ .|. .|++++|.+..++.......+|+.|++++|......+..+..+++|+.
T Consensus 169 ~~~l~~L~--------------------~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 228 (276)
T 2z62_A 169 LRVLHQMP--------------------LLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQK 228 (276)
T ss_dssp GHHHHTCT--------------------TCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCE
T ss_pred hhhhhhcc--------------------ccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccE
Confidence 55555555 111 444555555555444434445555555555544333344455566666
Q ss_pred EeccCCCCC
Q 044302 421 LSLSGCCKL 429 (830)
Q Consensus 421 L~L~~~~~l 429 (830)
|++++|+..
T Consensus 229 L~l~~N~~~ 237 (276)
T 2z62_A 229 IWLHTNPWD 237 (276)
T ss_dssp EECCSSCBC
T ss_pred EEccCCccc
Confidence 666655443
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.77 E-value=1.7e-17 Score=172.93 Aligned_cols=196 Identities=22% Similarity=0.223 Sum_probs=130.3
Q ss_pred CcEEeecCCCCCCcCCcccCCCCCcEEEecCCcccccCc-ccCCCCCccEEecCCccCcccccccccCCCCCCEEeccCC
Q 044302 348 LRTLKLSGCSKLKKFPQIVGMEGLSELYLDGTSITEVPS-SIELLPGIELLNLNDCKNLVRLPRSINGLKALKTLSLSGC 426 (830)
Q Consensus 348 L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~L~~~ 426 (830)
.+.++++++... .+|... .++|+.|++++|.+..++. .+..+++|++|+|++|......+..+..+++|++|++++|
T Consensus 18 ~~~l~~~~~~l~-~ip~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 18 KNSVDCSSKKLT-AIPSNI-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTEEECTTSCCS-SCCSCC-CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCEEEccCCCCC-ccCCCC-CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 445555554433 233211 2456677777777776654 4667777777777777665544455566777777777777
Q ss_pred CCCCccCcccCCCCCccEEecCCCcccCCCcc-cccCCCCcEEEcCCCCCCCCCCccccCCCCCCCCccCeecCCCCCCC
Q 044302 427 CKLENVPDTLGQVESLEELDISGTATRRPPCS-IFHMKNLKTLSFSGCNGPPSTASSLMLPSLSGLCSLTKLDLSDCGLG 505 (830)
Q Consensus 427 ~~l~~~~~~l~~l~~L~~L~L~~n~i~~l~~~-l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~ 505 (830)
......+..+..+++|++|++++|.+..++.. +..+++|++|++++|.+... ....+..+++|++|++++|.+.
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~L~~n~l~ 170 (270)
T 2o6q_A 96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSL-----PKGVFDKLTSLKELRLYNNQLK 170 (270)
T ss_dssp CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-----CTTTTTTCTTCCEEECCSSCCS
T ss_pred cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCcc-----CHhHccCCcccceeEecCCcCc
Confidence 66665556667777777777777777766543 45677777777777765421 1222667778888888888776
Q ss_pred CCccccccCCCCCCCEEeCCCCCCcccCcc-cCCCCccCEeeccccc
Q 044302 506 EGAILSDIGNLHSLKALYLSENNFVTLPAS-ISGLFNLEYLKLEDCK 551 (830)
Q Consensus 506 ~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~-l~~L~~L~~L~L~~c~ 551 (830)
...+..+..+++|+.|++++|.++.+|.. +..+++|+.|+|++|+
T Consensus 171 -~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 171 -RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp -CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred -EeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 33444577788888888888888877754 6778888888888876
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.77 E-value=3.4e-18 Score=180.05 Aligned_cols=197 Identities=19% Similarity=0.146 Sum_probs=104.4
Q ss_pred hhCCCCCceEEEcCcccCCCccccccCcceEEEecCCCCCCCCC-C-CCCCceEEEccCCChhhcccCCCCCCcccEEEc
Q 044302 135 FSLMTNLRLLKIGNVQLPKGLEYLSNKLRLLVWHQYPLKSLPSN-L-QLDKIVEFEMCYSRIEELWKGIKPLNTLKVMKL 212 (830)
Q Consensus 135 f~~l~~Lr~L~l~~~~l~~~~~~l~~~Lr~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L 212 (830)
+..+++++.++++++.+......+++.+++|++++|.++.++.. + .+.+|++|+|++|.|+.++.. ..+++|++|+|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~L 84 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDL 84 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEEC
T ss_pred ccccCCccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEEC
Confidence 44566666666666666554444555666666666666555422 2 556666666666666655533 55566666666
Q ss_pred cCCCCCCCCCCCCCCCceeEEeeeCCcccccccccccCCCCccEEecCCCCCCccCCcccc--cCcccEEeccCcccccc
Q 044302 213 SHSENLIKTPNFIEVPNLEVLDLEGCTRLREIHSSLVRHNKLILLNLKGCTSLTTLPGEIF--MKSLKTLVLSGCLKLRK 290 (830)
Q Consensus 213 ~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~c~~l~~lp~~~~--l~~L~~L~L~~~~~~~~ 290 (830)
++|.....+..+..+++|++|++++|......+..+..+++|++|++++ +.++.+|...+ +++|+.|++++|.+...
T Consensus 85 s~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 163 (290)
T 1p9a_G 85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANNNLTEL 163 (290)
T ss_dssp CSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred CCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCC-CCCCccChhhcccccCCCEEECCCCcCCcc
Confidence 6655433333355555666666655433322234455555555555555 34444444332 45555555555544433
Q ss_pred cCCCCCccccceEeecccccccccccchhcccCCcEEeccCCC
Q 044302 291 FPHVGGSMECLQELFLDETDIKEMPLSIEHLSGLILLTLKYCK 333 (830)
Q Consensus 291 ~~~~~~~l~~L~~L~L~~~~i~~l~~~l~~l~~L~~L~L~~~~ 333 (830)
.+..+..+++|+.|++++|.++.+|..+....+|+.|++.+|+
T Consensus 164 ~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 164 PAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred CHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence 3344445555555555555555555544444444455444443
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.76 E-value=2.6e-17 Score=171.63 Aligned_cols=198 Identities=18% Similarity=0.181 Sum_probs=111.9
Q ss_pred CccEEecCCCCCCccCCcccccCcccEEeccCcccccccCCCCCccccceEeecccccccccccc-hhcccCCcEEeccC
Q 044302 253 KLILLNLKGCTSLTTLPGEIFMKSLKTLVLSGCLKLRKFPHVGGSMECLQELFLDETDIKEMPLS-IEHLSGLILLTLKY 331 (830)
Q Consensus 253 ~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~-l~~l~~L~~L~L~~ 331 (830)
+.+.+++++ +.++.+|..+ .++|++|++++|.+....+..++.+++|++|++++|.++.++.. +..+++|++|++++
T Consensus 17 ~~~~l~~~~-~~l~~ip~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSS-KKLTAIPSNI-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTT-SCCSSCCSCC-CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccC-CCCCccCCCC-CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 355666666 5566666533 25666667766665555555666677777777777766666653 34556666666666
Q ss_pred CCCCCCCccccccCccCcEEeecCCCCCCcCCcccCCCCCcEEEecCCcccccCcc-cCCCCCccEEecCCccCcccccc
Q 044302 332 CKNLSSLPVTISSLKCLRTLKLSGCSKLKKFPQIVGMEGLSELYLDGTSITEVPSS-IELLPGIELLNLNDCKNLVRLPR 410 (830)
Q Consensus 332 ~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~L~~~~~l~~l~~ 410 (830)
|......+..+..+++|++|++++| .++.++.. +..+++|+.|+|++|......+.
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n-----------------------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 151 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRN-----------------------QLKSLPPRVFDSLTKLTYLSLGYNELQSLPKG 151 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSS-----------------------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CcCCcCCHhHcccccCCCEEECCCC-----------------------ccCeeCHHHhCcCcCCCEEECCCCcCCccCHh
Confidence 5544444444455555555555544 44433322 34455555555555544433333
Q ss_pred cccCCCCCCEEeccCCCCCCccCcccCCCCCccEEecCCCcccCCCcc-cccCCCCcEEEcCCCCC
Q 044302 411 SINGLKALKTLSLSGCCKLENVPDTLGQVESLEELDISGTATRRPPCS-IFHMKNLKTLSFSGCNG 475 (830)
Q Consensus 411 ~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~n~i~~l~~~-l~~l~~L~~L~L~~~~~ 475 (830)
.+..+++|++|++++|......+..+..+++|++|++++|.+..+|.. +..+++|+.|++++|+.
T Consensus 152 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 152 VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred HccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 455555666666665555554445556666666666666666655543 44566677777766653
No 79
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.76 E-value=9.2e-18 Score=178.48 Aligned_cols=190 Identities=23% Similarity=0.288 Sum_probs=135.3
Q ss_pred cCccCcEEeecCCCCCCcCCcccCCCCCcEEEecCCcccccCcccCCCCCccEEecCCccCcccccccccCCCCCCEEec
Q 044302 344 SLKCLRTLKLSGCSKLKKFPQIVGMEGLSELYLDGTSITEVPSSIELLPGIELLNLNDCKNLVRLPRSINGLKALKTLSL 423 (830)
Q Consensus 344 ~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~L 423 (830)
.+++|++|++++|.. ..++.+..+++|+.|++++|.+..++. +..+++|+.|++++|.... ++ .+..+++|++|++
T Consensus 39 ~l~~L~~L~l~~~~i-~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 39 DLDGITTLSAFGTGV-TTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHHTCCEEECTTSCC-CCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEEC
T ss_pred HcCCcCEEEeeCCCc-cCchhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEEC
Confidence 344455555555432 223445555666666666666666655 6667777777777766433 33 4667777777777
Q ss_pred cCCCCCCccCcccCCCCCccEEecCCCcccCCCcccccCCCCcEEEcCCCCCCCCCCccccCCCCCCCCccCeecCCCCC
Q 044302 424 SGCCKLENVPDTLGQVESLEELDISGTATRRPPCSIFHMKNLKTLSFSGCNGPPSTASSLMLPSLSGLCSLTKLDLSDCG 503 (830)
Q Consensus 424 ~~~~~l~~~~~~l~~l~~L~~L~L~~n~i~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~ 503 (830)
++|.... ++ .+..+++|++|++++|.+..++. +..+++|+.|++++|.... ++.+..+++|+.|++++|.
T Consensus 115 ~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-------~~~l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 115 TSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSD-------LTPLANLSKLTTLKADDNK 184 (308)
T ss_dssp TTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-------CGGGTTCTTCCEEECCSSC
T ss_pred CCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCC-------ChhhcCCCCCCEEECCCCc
Confidence 7776544 33 27778888888888888887765 7788888888888887543 3337788899999999998
Q ss_pred CCCCccccccCCCCCCCEEeCCCCCCcccCcccCCCCccCEeeccccc
Q 044302 504 LGEGAILSDIGNLHSLKALYLSENNFVTLPASISGLFNLEYLKLEDCK 551 (830)
Q Consensus 504 l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~c~ 551 (830)
+.+ ++. +..+++|+.|++++|.+..++. +..+++|+.|++++|+
T Consensus 185 l~~--~~~-l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 185 ISD--ISP-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQT 228 (308)
T ss_dssp CCC--CGG-GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEE
T ss_pred cCc--Chh-hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCe
Confidence 863 332 7889999999999999998884 8889999999999986
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.76 E-value=1.2e-17 Score=174.22 Aligned_cols=195 Identities=17% Similarity=0.165 Sum_probs=92.9
Q ss_pred cCccCcEEeecCCCCCCcCCcccCCCCCcEEEecCCcccccCcccCCCCCccEEecCCccCcccccccccCCCCCCEEec
Q 044302 344 SLKCLRTLKLSGCSKLKKFPQIVGMEGLSELYLDGTSITEVPSSIELLPGIELLNLNDCKNLVRLPRSINGLKALKTLSL 423 (830)
Q Consensus 344 ~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~L 423 (830)
.+++|+.|++++|. ...++.+..+++|+.|++++|.+..++ .+..+++|++|++++|......+..+..+++|++|++
T Consensus 39 ~l~~L~~L~l~~~~-i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 39 ELNSIDQIIANNSD-IKSVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp HHTTCCEEECTTSC-CCCCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cccceeeeeeCCCC-cccccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence 34444444444433 222333444455555555555555442 3455555555555555544444444555555555555
Q ss_pred cCCCCCCccCcccCCCCCccEEecCCCcccCCCcc-cccCCCCcEEEcCCCCCCCCCCccccCCCCCCCCccCeecCCCC
Q 044302 424 SGCCKLENVPDTLGQVESLEELDISGTATRRPPCS-IFHMKNLKTLSFSGCNGPPSTASSLMLPSLSGLCSLTKLDLSDC 502 (830)
Q Consensus 424 ~~~~~l~~~~~~l~~l~~L~~L~L~~n~i~~l~~~-l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~ 502 (830)
++|......+..++.+++|++|++++|.+..++.. +..+++|++|++++|+.... ....+..+++|++|++++|
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~L~~N 191 (272)
T 3rfs_A 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL-----PEGVFDKLTQLKDLRLYQN 191 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-----CTTTTTTCTTCCEEECCSS
T ss_pred CCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCcc-----CHHHhcCCccCCEEECCCC
Confidence 55555444444455555555555555555544432 23455555555555543211 1111344455555555555
Q ss_pred CCCCCccccccCCCCCCCEEeCCCCCCcccCcccCCCCccCEeecccccc
Q 044302 503 GLGEGAILSDIGNLHSLKALYLSENNFVTLPASISGLFNLEYLKLEDCKR 552 (830)
Q Consensus 503 ~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~c~~ 552 (830)
.+. +..+..+..+++|+.|++++|.+. ..+++|+.|+++.|..
T Consensus 192 ~l~-~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~ 234 (272)
T 3rfs_A 192 QLK-SVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKH 234 (272)
T ss_dssp CCS-CCCTTTTTTCTTCCEEECCSSCBC------CCTTTTHHHHHHHHHT
T ss_pred cCC-ccCHHHHhCCcCCCEEEccCCCcc------ccCcHHHHHHHHHHhC
Confidence 544 233333455555555555555433 1233445555554443
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.75 E-value=7.1e-18 Score=172.50 Aligned_cols=203 Identities=17% Similarity=0.156 Sum_probs=109.3
Q ss_pred CccCCcccccCcccEEeccCcccccccCCCCCccccceEeeccccc-cccccc-chhcccCCcEEeccC-CCCCCCCccc
Q 044302 265 LTTLPGEIFMKSLKTLVLSGCLKLRKFPHVGGSMECLQELFLDETD-IKEMPL-SIEHLSGLILLTLKY-CKNLSSLPVT 341 (830)
Q Consensus 265 l~~lp~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~-i~~l~~-~l~~l~~L~~L~L~~-~~~~~~~~~~ 341 (830)
++.+|. ...+|++|++++|.+....+..++.+++|+.|++++|. ++.++. .+..+++|++|++++ |......+..
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~ 100 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA 100 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence 445554 33456666666655554444456666666666666664 655554 455566666666665 4433333345
Q ss_pred cccCccCcEEeecCCCCCCcCCcccCCCCCc---EEEecCC-cccccCcc-cCCCCCcc-EEecCCccCcccccccccCC
Q 044302 342 ISSLKCLRTLKLSGCSKLKKFPQIVGMEGLS---ELYLDGT-SITEVPSS-IELLPGIE-LLNLNDCKNLVRLPRSINGL 415 (830)
Q Consensus 342 l~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~---~L~L~~~-~i~~l~~~-~~~l~~L~-~L~L~~~~~l~~l~~~~~~l 415 (830)
+..+++|++|++++|.... +|.+..+++|+ .|++++| .++.+|.. +..+++|+ .|++++|... .+|......
T Consensus 101 f~~l~~L~~L~l~~n~l~~-lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~ 178 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTGLKM-FPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG 178 (239)
T ss_dssp EECCTTCCEEEEEEECCCS-CCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT
T ss_pred hCCCCCCCEEeCCCCCCcc-ccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC
Confidence 5566666666666655333 44444555555 6666666 66655543 55566666 6666665544 333222222
Q ss_pred CCCCEEeccCCC-CCCccCcccCCC-CCccEEecCCCcccCCCcccccCCCCcEEEcCCC
Q 044302 416 KALKTLSLSGCC-KLENVPDTLGQV-ESLEELDISGTATRRPPCSIFHMKNLKTLSFSGC 473 (830)
Q Consensus 416 ~~L~~L~L~~~~-~l~~~~~~l~~l-~~L~~L~L~~n~i~~l~~~l~~l~~L~~L~L~~~ 473 (830)
++|+.|++++|. .....+..+..+ ++|++|++++|.++.+|.. .+++|+.|.+.++
T Consensus 179 ~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 179 TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence 556666666654 333333445555 5666666666665555543 4555555555543
No 82
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.75 E-value=2.5e-17 Score=178.62 Aligned_cols=235 Identities=22% Similarity=0.273 Sum_probs=156.3
Q ss_pred ceEEEecCCCCCCCCCCCCCCceEEEccCCChhhccc-CCCCCCcccEEEccCCCCCCCCC--CCCCCCceeEEeeeCCc
Q 044302 163 RLLVWHQYPLKSLPSNLQLDKIVEFEMCYSRIEELWK-GIKPLNTLKVMKLSHSENLIKTP--NFIEVPNLEVLDLEGCT 239 (830)
Q Consensus 163 r~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~-~~~~l~~L~~L~L~~~~~~~~~~--~~~~l~~L~~L~L~~~~ 239 (830)
+.++.+++.++++|..+ +.++++|+|++|+|+.+|. .+..+++|++|+|++|.....++ .|.++++|+++...+++
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 56777888888888876 5688999999999999986 57899999999999998655444 47888888775555545
Q ss_pred ccccc-cccccCCCCccEEecCCCCCCccCCcccc--cCcccEEeccCcccccccC-CCCCcc-ccceEeeccccccccc
Q 044302 240 RLREI-HSSLVRHNKLILLNLKGCTSLTTLPGEIF--MKSLKTLVLSGCLKLRKFP-HVGGSM-ECLQELFLDETDIKEM 314 (830)
Q Consensus 240 ~l~~~-~~~l~~l~~L~~L~L~~c~~l~~lp~~~~--l~~L~~L~L~~~~~~~~~~-~~~~~l-~~L~~L~L~~~~i~~l 314 (830)
.+..+ +..+..+++|++|++++ +.++.+|...+ ..++..|++.++.....++ ..+..+ ..++.|++++|.++.+
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i 169 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISN-TGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI 169 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEE-ECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred cccccCchhhhhccccccccccc-cccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence 56655 56788899999999998 66777776554 5567778887655544444 344444 3577788888888877
Q ss_pred ccchhcccCCcEEeccCCCCCCCCccccccCccCcEEeecCCCCCCcCCcccCCCCCcEEEecCCcccccCcccCCCCCc
Q 044302 315 PLSIEHLSGLILLTLKYCKNLSSLPVTISSLKCLRTLKLSGCSKLKKFPQIVGMEGLSELYLDGTSITEVPSSIELLPGI 394 (830)
Q Consensus 315 ~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L 394 (830)
+.......+|+.|.+.++...+.+|.. .+.++++|+.|+|++|.++.+|.. .+.+|
T Consensus 170 ~~~~f~~~~L~~l~l~~~n~l~~i~~~----------------------~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L 225 (350)
T 4ay9_X 170 HNSAFNGTQLDELNLSDNNNLEELPND----------------------VFHGASGPVILDISRTRIHSLPSY--GLENL 225 (350)
T ss_dssp CTTSSTTEEEEEEECTTCTTCCCCCTT----------------------TTTTEECCSEEECTTSCCCCCCSS--SCTTC
T ss_pred ChhhccccchhHHhhccCCcccCCCHH----------------------HhccCcccchhhcCCCCcCccChh--hhccc
Confidence 765555555555555544444333321 033445555666666666666652 35556
Q ss_pred cEEecCCccCcccccccccCCCCCCEEecc
Q 044302 395 ELLNLNDCKNLVRLPRSINGLKALKTLSLS 424 (830)
Q Consensus 395 ~~L~L~~~~~l~~l~~~~~~l~~L~~L~L~ 424 (830)
+.|.+.++..++.+|. +..+++|+.+++.
T Consensus 226 ~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 226 KKLRARSTYNLKKLPT-LEKLVALMEASLT 254 (350)
T ss_dssp CEEECTTCTTCCCCCC-TTTCCSCCEEECS
T ss_pred hHhhhccCCCcCcCCC-chhCcChhhCcCC
Confidence 6666665555555552 4455555555554
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.75 E-value=1.6e-17 Score=169.77 Aligned_cols=205 Identities=19% Similarity=0.234 Sum_probs=134.6
Q ss_pred CCcCCcccCCCCCcEEEecCCcccccCc-ccCCCCCccEEecCCcc-CcccccccccCCCCCCEEeccC-CCCCCccCcc
Q 044302 359 LKKFPQIVGMEGLSELYLDGTSITEVPS-SIELLPGIELLNLNDCK-NLVRLPRSINGLKALKTLSLSG-CCKLENVPDT 435 (830)
Q Consensus 359 ~~~~~~~~~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~L~~~~-~l~~l~~~~~~l~~L~~L~L~~-~~~l~~~~~~ 435 (830)
++.+|. -.++|+.|++++|.++.+|. .+..+++|+.|++++|. .....+..+.++++|++|++++ |......+..
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~ 100 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA 100 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence 444454 23467777777777777765 46777777777777776 3333344677777888888877 4444444456
Q ss_pred cCCCCCccEEecCCCcccCCCcccccCCCCc---EEEcCCC-CCCCCCCccccCCCCCCCCccC-eecCCCCCCCCCccc
Q 044302 436 LGQVESLEELDISGTATRRPPCSIFHMKNLK---TLSFSGC-NGPPSTASSLMLPSLSGLCSLT-KLDLSDCGLGEGAIL 510 (830)
Q Consensus 436 l~~l~~L~~L~L~~n~i~~l~~~l~~l~~L~---~L~L~~~-~~~~~~~~~~~l~~l~~l~~L~-~L~Ls~~~l~~~~~~ 510 (830)
+..+++|++|++++|.+..+|. +..+++|+ +|++++| .... .....+.++++|+ +|++++|++. .++
T Consensus 101 f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~-----i~~~~~~~l~~L~~~L~l~~n~l~--~i~ 172 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTS-----IPVNAFQGLCNETLTLKLYNNGFT--SVQ 172 (239)
T ss_dssp EECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCE-----ECTTTTTTTBSSEEEEECCSCCCC--EEC
T ss_pred hCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhh-----cCcccccchhcceeEEEcCCCCCc--ccC
Confidence 7777788888888887777776 66677776 8888777 4321 1122367777888 8888888775 244
Q ss_pred cccCCCCCCCEEeCCCCC-CcccCc-ccCCC-CccCEeeccccccccccCC-CCCCcceeeccCCccc
Q 044302 511 SDIGNLHSLKALYLSENN-FVTLPA-SISGL-FNLEYLKLEDCKRLQSLPQ-LPPNVHNVRLNGCASL 574 (830)
Q Consensus 511 ~~l~~l~~L~~L~L~~n~-l~~lp~-~l~~L-~~L~~L~L~~c~~l~~lp~-lp~sL~~L~i~~C~~L 574 (830)
......++|+.|++++|. ++.+|. .+..+ ++|++|++++|+ ++.+|. ..++|+.|++.++..|
T Consensus 173 ~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~-l~~l~~~~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 173 GYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS-VTALPSKGLEHLKELIARNTWTL 239 (239)
T ss_dssp TTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC-CCCCCCTTCTTCSEEECTTC---
T ss_pred HhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc-cccCChhHhccCceeeccCccCC
Confidence 433333778888888884 777754 45677 788888888764 556654 3567777777776543
No 84
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.74 E-value=2.4e-17 Score=171.99 Aligned_cols=186 Identities=19% Similarity=0.160 Sum_probs=109.2
Q ss_pred cccCccCcEEeecCCCCCCcCCcccCCCCCcEEEecCCcccccCcc-cCCCCCccEEecCCccCcccccccccCCCCCCE
Q 044302 342 ISSLKCLRTLKLSGCSKLKKFPQIVGMEGLSELYLDGTSITEVPSS-IELLPGIELLNLNDCKNLVRLPRSINGLKALKT 420 (830)
Q Consensus 342 l~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~ 420 (830)
+..+++|++|++++|.... ++.+..+++|++|++++|.++.++.. +..+++|+.|++++|......+..+..+++|++
T Consensus 59 l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 137 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHD-ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY 137 (272)
T ss_dssp GGGCTTCCEEECTTSCCCC-CGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred cccCCCCcEEECCCCCCCC-chhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCE
Confidence 4444455555555444322 33444555555666666655555443 455666666666666655555555566666666
Q ss_pred EeccCCCCCCccCcccCCCCCccEEecCCCcccCCCcc-cccCCCCcEEEcCCCCCCCCCCccccCCCCCCCCccCeecC
Q 044302 421 LSLSGCCKLENVPDTLGQVESLEELDISGTATRRPPCS-IFHMKNLKTLSFSGCNGPPSTASSLMLPSLSGLCSLTKLDL 499 (830)
Q Consensus 421 L~L~~~~~l~~~~~~l~~l~~L~~L~L~~n~i~~l~~~-l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~l~~L~~L~L 499 (830)
|++++|......+..++.+++|++|++++|.+..++.. +..+++|++|++++|+.... ....+..+++|+.|++
T Consensus 138 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-----~~~~~~~l~~L~~L~l 212 (272)
T 3rfs_A 138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV-----PDGVFDRLTSLQYIWL 212 (272)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-----CTTTTTTCTTCCEEEC
T ss_pred EECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCcc-----CHHHHhCCcCCCEEEc
Confidence 66666655554455556666666777766666655443 35566777777776664421 1122566777777777
Q ss_pred CCCCCCCCccccccCCCCCCCEEeCCCCCCc-ccCcccCCCCc
Q 044302 500 SDCGLGEGAILSDIGNLHSLKALYLSENNFV-TLPASISGLFN 541 (830)
Q Consensus 500 s~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~-~lp~~l~~L~~ 541 (830)
++|.+. +.+++|+.|+++.|.+. .+|.++..++.
T Consensus 213 ~~N~~~--------~~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 213 HDNPWD--------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp CSSCBC--------CCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred cCCCcc--------ccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 777654 23566777777777766 66766665544
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.74 E-value=2.2e-17 Score=175.54 Aligned_cols=178 Identities=20% Similarity=0.270 Sum_probs=109.5
Q ss_pred cccCccCcEEeecCCCCCCcCCcccCCCCCcEEEecCCcccccCcccCCCCCccEEecCCccCcccccccccCCCCCCEE
Q 044302 342 ISSLKCLRTLKLSGCSKLKKFPQIVGMEGLSELYLDGTSITEVPSSIELLPGIELLNLNDCKNLVRLPRSINGLKALKTL 421 (830)
Q Consensus 342 l~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L 421 (830)
+..+++|+.|++++|.... ++.+..+++|+.|++++|.++.++ .+..+++|+.|++++|.... ++. +..+++|++|
T Consensus 59 ~~~l~~L~~L~L~~n~i~~-~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L 134 (308)
T 1h6u_A 59 VQYLNNLIGLELKDNQITD-LAPLKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVL 134 (308)
T ss_dssp GGGCTTCCEEECCSSCCCC-CGGGTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEE
T ss_pred hhccCCCCEEEccCCcCCC-ChhHccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEE
Confidence 3334444444444443222 122444444555555555555443 34555555555555555433 222 5556666666
Q ss_pred eccCCCCCCccCcccCCCCCccEEecCCCcccCCCcccccCCCCcEEEcCCCCCCCCCCccccCCCCCCCCccCeecCCC
Q 044302 422 SLSGCCKLENVPDTLGQVESLEELDISGTATRRPPCSIFHMKNLKTLSFSGCNGPPSTASSLMLPSLSGLCSLTKLDLSD 501 (830)
Q Consensus 422 ~L~~~~~l~~~~~~l~~l~~L~~L~L~~n~i~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~ 501 (830)
++++|......+ ++.+++|+.|++++|.+..++. +..+++|+.|++++|.... ++.+..+++|++|++++
T Consensus 135 ~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-------~~~l~~l~~L~~L~L~~ 204 (308)
T 1h6u_A 135 YLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISD-------ISPLASLPNLIEVHLKN 204 (308)
T ss_dssp ECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-------CGGGGGCTTCCEEECTT
T ss_pred ECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCc-------ChhhcCCCCCCEEEccC
Confidence 666665443322 6667777777777777776665 6777888888888877542 23367788888899999
Q ss_pred CCCCCCccccccCCCCCCCEEeCCCCCCcccCccc
Q 044302 502 CGLGEGAILSDIGNLHSLKALYLSENNFVTLPASI 536 (830)
Q Consensus 502 ~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l 536 (830)
|.+.. ++ .+..+++|+.|++++|.++..|..+
T Consensus 205 N~l~~--~~-~l~~l~~L~~L~l~~N~i~~~~~~~ 236 (308)
T 1h6u_A 205 NQISD--VS-PLANTSNLFIVTLTNQTITNQPVFY 236 (308)
T ss_dssp SCCCB--CG-GGTTCTTCCEEEEEEEEEECCCEEC
T ss_pred CccCc--cc-cccCCCCCCEEEccCCeeecCCeee
Confidence 88873 33 3788999999999999998777543
No 86
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.73 E-value=5.2e-17 Score=176.16 Aligned_cols=234 Identities=16% Similarity=0.148 Sum_probs=137.5
Q ss_pred EeecccccccccccchhcccCCcEEeccCCCCCCCCccccccCccCcEEeecCCCCCCcCCc--ccCCCCCcE-EEecCC
Q 044302 303 ELFLDETDIKEMPLSIEHLSGLILLTLKYCKNLSSLPVTISSLKCLRTLKLSGCSKLKKFPQ--IVGMEGLSE-LYLDGT 379 (830)
Q Consensus 303 ~L~L~~~~i~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~--~~~l~~L~~-L~L~~~ 379 (830)
.++.++++++.+|..+ .+++++|+|++|++....+..|..+++|++|+|++|...+.++. +.+++++.. +.+.+|
T Consensus 13 ~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp EEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred EEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 3444555555565544 24566666666554433334566666666666666665554443 345555543 445556
Q ss_pred cccccC-cccCCCCCccEEecCCccCcccccccccCCCCCCEEeccCCCCCCccCc-ccCCC-CCccEEecCCCcccCCC
Q 044302 380 SITEVP-SSIELLPGIELLNLNDCKNLVRLPRSINGLKALKTLSLSGCCKLENVPD-TLGQV-ESLEELDISGTATRRPP 456 (830)
Q Consensus 380 ~i~~l~-~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~-~l~~l-~~L~~L~L~~n~i~~l~ 456 (830)
.++.++ ..+..+++|+.|++++|......+..+....++..|++.++..+..++. .+..+ ..++.|++++|.++.++
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~ 170 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIH 170 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEEC
T ss_pred cccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCC
Confidence 677664 4466777777777777766555554555556666777766555554443 34443 35667777777777666
Q ss_pred cccccCCCCcEEEcCCCCCCCCCCccccCCCCCCCCccCeecCCCCCCCCCccccccCCCCCCCEEeCCCCCCcccCccc
Q 044302 457 CSIFHMKNLKTLSFSGCNGPPSTASSLMLPSLSGLCSLTKLDLSDCGLGEGAILSDIGNLHSLKALYLSENNFVTLPASI 536 (830)
Q Consensus 457 ~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l 536 (830)
...+..++|++|.+.++. .+. ...+..|..+++|+.|+|++|+|+.+|..
T Consensus 171 ~~~f~~~~L~~l~l~~~n----------------------------~l~-~i~~~~f~~l~~L~~LdLs~N~l~~lp~~- 220 (350)
T 4ay9_X 171 NSAFNGTQLDELNLSDNN----------------------------NLE-ELPNDVFHGASGPVILDISRTRIHSLPSY- 220 (350)
T ss_dssp TTSSTTEEEEEEECTTCT----------------------------TCC-CCCTTTTTTEECCSEEECTTSCCCCCCSS-
T ss_pred hhhccccchhHHhhccCC----------------------------ccc-CCCHHHhccCcccchhhcCCCCcCccChh-
Confidence 555555555555554433 222 22233467777788888888887777753
Q ss_pred CCCCccCEeeccccccccccCCCC--CCcceeecc
Q 044302 537 SGLFNLEYLKLEDCKRLQSLPQLP--PNVHNVRLN 569 (830)
Q Consensus 537 ~~L~~L~~L~L~~c~~l~~lp~lp--~sL~~L~i~ 569 (830)
.+.+|+.|.+.+|..++.+|.+. ++|+.+++.
T Consensus 221 -~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 221 -GLENLKKLRARSTYNLKKLPTLEKLVALMEASLT 254 (350)
T ss_dssp -SCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECS
T ss_pred -hhccchHhhhccCCCcCcCCCchhCcChhhCcCC
Confidence 35667777777777777777543 455555553
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.73 E-value=9e-19 Score=189.12 Aligned_cols=99 Identities=20% Similarity=0.166 Sum_probs=51.5
Q ss_pred ccEEecCCCCCCccCCcccc-c--CcccEEeccCcccccccCCCCCccccceEeecccccccc--cccchhcccCCcEEe
Q 044302 254 LILLNLKGCTSLTTLPGEIF-M--KSLKTLVLSGCLKLRKFPHVGGSMECLQELFLDETDIKE--MPLSIEHLSGLILLT 328 (830)
Q Consensus 254 L~~L~L~~c~~l~~lp~~~~-l--~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~--l~~~l~~l~~L~~L~ 328 (830)
++.++++++. +. |..+. + +.++.|+++++.+....+. +..+++|++|++++|.+.. ++..+..+++|++|+
T Consensus 49 ~~~l~l~~~~-~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKN-LH--PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCB-CC--HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeecccccc-CC--HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 5666666632 22 22222 2 5666666666655444433 3345666666666665542 455555555555555
Q ss_pred ccCCCCCCCCccccccCccCcEEeecCC
Q 044302 329 LKYCKNLSSLPVTISSLKCLRTLKLSGC 356 (830)
Q Consensus 329 L~~~~~~~~~~~~l~~l~~L~~L~L~~~ 356 (830)
+++|......+..+..+++|++|++++|
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~ 152 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGC 152 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTC
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCC
Confidence 5555544444444445555555555544
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.72 E-value=3.1e-19 Score=196.66 Aligned_cols=250 Identities=17% Similarity=0.136 Sum_probs=141.4
Q ss_pred ceEeecccccccccccchhcccCCcEEeccCCCCCCCCc----cccccCccCcEEeecCCCCC---CcCCc--------c
Q 044302 301 LQELFLDETDIKEMPLSIEHLSGLILLTLKYCKNLSSLP----VTISSLKCLRTLKLSGCSKL---KKFPQ--------I 365 (830)
Q Consensus 301 L~~L~L~~~~i~~l~~~l~~l~~L~~L~L~~~~~~~~~~----~~l~~l~~L~~L~L~~~~~~---~~~~~--------~ 365 (830)
|+...+....+..++..+..+++|+.|++++|......+ ..+..+++|++|++++|... ..+|. +
T Consensus 11 L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l 90 (386)
T 2ca6_A 11 LKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQAL 90 (386)
T ss_dssp CEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHH
Confidence 333344444555666666666777777777765554322 33556677777777665322 12221 2
Q ss_pred cCCCCCcEEEecCCcccc-----cCcccCCCCCccEEecCCccCcccc----cccccCC---------CCCCEEeccCCC
Q 044302 366 VGMEGLSELYLDGTSITE-----VPSSIELLPGIELLNLNDCKNLVRL----PRSINGL---------KALKTLSLSGCC 427 (830)
Q Consensus 366 ~~l~~L~~L~L~~~~i~~-----l~~~~~~l~~L~~L~L~~~~~l~~l----~~~~~~l---------~~L~~L~L~~~~ 427 (830)
..+++|+.|+|++|.+.. +|..+..+++|+.|+|++|...... +..+..+ ++|++|++++|.
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 355666677777666664 5555666777777777777654322 2223333 677777777766
Q ss_pred CC-CccC---cccCCCCCccEEecCCCccc------CCCcccccCCCCcEEEcCCCCCCCCCCccccCCCCCCCCccCee
Q 044302 428 KL-ENVP---DTLGQVESLEELDISGTATR------RPPCSIFHMKNLKTLSFSGCNGPPSTASSLMLPSLSGLCSLTKL 497 (830)
Q Consensus 428 ~l-~~~~---~~l~~l~~L~~L~L~~n~i~------~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~l~~L~~L 497 (830)
.. ..++ ..+..+++|++|++++|.+. ..+..+..+++|++|+|++|.+..... ......+..+++|++|
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~-~~l~~~l~~~~~L~~L 249 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGS-SALAIALKSWPNLREL 249 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHH-HHHHHHGGGCTTCCEE
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHH-HHHHHHHccCCCcCEE
Confidence 55 2333 34555667777777777665 223355666677777777666321000 0001124556667777
Q ss_pred cCCCCCCCCC---cccccc--CCCCCCCEEeCCCCCCcc-----cCccc-CCCCccCEeeccccc
Q 044302 498 DLSDCGLGEG---AILSDI--GNLHSLKALYLSENNFVT-----LPASI-SGLFNLEYLKLEDCK 551 (830)
Q Consensus 498 ~Ls~~~l~~~---~~~~~l--~~l~~L~~L~L~~n~l~~-----lp~~l-~~L~~L~~L~L~~c~ 551 (830)
+|++|.++.. .++..+ +.+++|+.|+|++|.+.. +|..+ .++++|++|++++|+
T Consensus 250 ~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 250 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred ECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 7777766521 123344 336777777777777765 66655 446777777777764
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.72 E-value=1.3e-17 Score=177.61 Aligned_cols=203 Identities=18% Similarity=0.122 Sum_probs=125.2
Q ss_pred cCcccEEeccCcccccccCCCC--CccccceEeecccccccccc-----cchhcccCCcEEeccCCCCCCCCccccccCc
Q 044302 274 MKSLKTLVLSGCLKLRKFPHVG--GSMECLQELFLDETDIKEMP-----LSIEHLSGLILLTLKYCKNLSSLPVTISSLK 346 (830)
Q Consensus 274 l~~L~~L~L~~~~~~~~~~~~~--~~l~~L~~L~L~~~~i~~l~-----~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~ 346 (830)
+++|++|++++|.+....|..+ +.+++|++|++++|.+.... ..+..+++|++|++++|......+..+..++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 4557777777766666666655 66677777777777666321 1223455555555555555444444455555
Q ss_pred cCcEEeecCCCCCCcCCcccCCCCCcEEEecCCcccccC--cccCCCCCccEEecCCccCcccccc----cccCCCCCCE
Q 044302 347 CLRTLKLSGCSKLKKFPQIVGMEGLSELYLDGTSITEVP--SSIELLPGIELLNLNDCKNLVRLPR----SINGLKALKT 420 (830)
Q Consensus 347 ~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~--~~~~~l~~L~~L~L~~~~~l~~l~~----~~~~l~~L~~ 420 (830)
+|++|++++|...... .++ ..+..+++|++|+|++|... .++. .+..+++|++
T Consensus 170 ~L~~L~Ls~N~l~~~~--------------------~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~ 228 (310)
T 4glp_A 170 ALTSLDLSDNPGLGER--------------------GLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHS 228 (310)
T ss_dssp TCCEEECCSCTTCHHH--------------------HHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSS
T ss_pred CCCEEECCCCCCccch--------------------hhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCE
Confidence 5555555444432110 021 12345566666666666543 2222 2456677777
Q ss_pred EeccCCCCCCccCcccCCC---CCccEEecCCCcccCCCcccccCCCCcEEEcCCCCCCCCCCccccCCCCCCCCccCee
Q 044302 421 LSLSGCCKLENVPDTLGQV---ESLEELDISGTATRRPPCSIFHMKNLKTLSFSGCNGPPSTASSLMLPSLSGLCSLTKL 497 (830)
Q Consensus 421 L~L~~~~~l~~~~~~l~~l---~~L~~L~L~~n~i~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~l~~L~~L 497 (830)
|++++|......|..+..+ ++|++|++++|.++.+|..+. ++|++|+|++|++.. +|.+..+++|+.|
T Consensus 229 L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~-------~~~~~~l~~L~~L 299 (310)
T 4glp_A 229 LDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNR-------APQPDELPEVDNL 299 (310)
T ss_dssp EECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCS-------CCCTTSCCCCSCE
T ss_pred EECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCC-------CchhhhCCCccEE
Confidence 7777777766666666555 588888888888888877664 788888888887652 2446778889999
Q ss_pred cCCCCCCCC
Q 044302 498 DLSDCGLGE 506 (830)
Q Consensus 498 ~Ls~~~l~~ 506 (830)
++++|++++
T Consensus 300 ~L~~N~l~~ 308 (310)
T 4glp_A 300 TLDGNPFLV 308 (310)
T ss_dssp ECSSTTTSC
T ss_pred ECcCCCCCC
Confidence 999988863
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.72 E-value=1.4e-18 Score=187.49 Aligned_cols=200 Identities=17% Similarity=0.196 Sum_probs=121.5
Q ss_pred ccCcEEeecCCCCCCcCCcccCCCCCcEEEecCCcccc--cCcccCCCCCccEEecCCccCcccccccccCCCCCCEEec
Q 044302 346 KCLRTLKLSGCSKLKKFPQIVGMEGLSELYLDGTSITE--VPSSIELLPGIELLNLNDCKNLVRLPRSINGLKALKTLSL 423 (830)
Q Consensus 346 ~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~--l~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~L 423 (830)
++++.|++++|......+.+..+++|+.|++++|.+.. ++..+..+++|++|++++|......+..+..+++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 45555555555544444445556666666666666652 5555666777777777777655556666666777777777
Q ss_pred cCCCCCC--ccCcccCCCCCccEEecCCC-cccC--CCcccccCC-CCcEEEcCCCCC-CCCCCccccCC-CCCCCCccC
Q 044302 424 SGCCKLE--NVPDTLGQVESLEELDISGT-ATRR--PPCSIFHMK-NLKTLSFSGCNG-PPSTASSLMLP-SLSGLCSLT 495 (830)
Q Consensus 424 ~~~~~l~--~~~~~l~~l~~L~~L~L~~n-~i~~--l~~~l~~l~-~L~~L~L~~~~~-~~~~~~~~~l~-~l~~l~~L~ 495 (830)
++|.... .++..+..+++|++|++++| .++. ++..+..++ +|++|++++|.. .. ...++ .+..+++|+
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~----~~~l~~~~~~~~~L~ 225 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQ----KSDLSTLVRRCPNLV 225 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSC----HHHHHHHHHHCTTCS
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCC----HHHHHHHHhhCCCCC
Confidence 7774333 25555666677777777777 6653 455566677 777777777641 10 00111 245567777
Q ss_pred eecCCCCC-CCCCccccccCCCCCCCEEeCCCCC-Cc-ccCcccCCCCccCEeecccc
Q 044302 496 KLDLSDCG-LGEGAILSDIGNLHSLKALYLSENN-FV-TLPASISGLFNLEYLKLEDC 550 (830)
Q Consensus 496 ~L~Ls~~~-l~~~~~~~~l~~l~~L~~L~L~~n~-l~-~lp~~l~~L~~L~~L~L~~c 550 (830)
+|++++|. ++ ...+..+..+++|+.|++++|. +. .....+..+++|++|+|++|
T Consensus 226 ~L~l~~~~~l~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 226 HLDLSDSVMLK-NDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp EEECTTCTTCC-GGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred EEeCCCCCcCC-HHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 77777777 43 3445566777777777777774 22 11124566777777777777
No 91
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.71 E-value=1.5e-18 Score=189.22 Aligned_cols=248 Identities=14% Similarity=0.056 Sum_probs=122.7
Q ss_pred ccCcccccccCCCCCccccceEeecccccccccc-----cchhccc-CCcEEeccCCCCCCCCccccccC-----ccCcE
Q 044302 282 LSGCLKLRKFPHVGGSMECLQELFLDETDIKEMP-----LSIEHLS-GLILLTLKYCKNLSSLPVTISSL-----KCLRT 350 (830)
Q Consensus 282 L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~-----~~l~~l~-~L~~L~L~~~~~~~~~~~~l~~l-----~~L~~ 350 (830)
++.+.+...+|..+...++|++|++++|.++..+ ..+..++ +|++|++++|......+..+..+ ++|++
T Consensus 5 ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~ 84 (362)
T 3goz_A 5 LTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTS 84 (362)
T ss_dssp CCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCE
T ss_pred cccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccE
Confidence 3344444444444444444555555555555443 3444455 56666666555544444444443 56666
Q ss_pred EeecCCCCCCcCCc-----ccCC-CCCcEEEecCCcccccCcc-----cCC-CCCccEEecCCccCcc----cccccccC
Q 044302 351 LKLSGCSKLKKFPQ-----IVGM-EGLSELYLDGTSITEVPSS-----IEL-LPGIELLNLNDCKNLV----RLPRSING 414 (830)
Q Consensus 351 L~L~~~~~~~~~~~-----~~~l-~~L~~L~L~~~~i~~l~~~-----~~~-l~~L~~L~L~~~~~l~----~l~~~~~~ 414 (830)
|++++|......+. +... ++|+.|++++|.++..+.. +.. .++|++|+|++|.... .++..+..
T Consensus 85 L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~ 164 (362)
T 3goz_A 85 LNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAA 164 (362)
T ss_dssp EECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHT
T ss_pred EECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhc
Confidence 66666554433322 2223 5666666666666544321 233 2466666666665553 23333444
Q ss_pred CC-CCCEEeccCCCCCCccCcc----cCCC-CCccEEecCCCcccC-----CCccccc-CCCCcEEEcCCCCCCCCCCcc
Q 044302 415 LK-ALKTLSLSGCCKLENVPDT----LGQV-ESLEELDISGTATRR-----PPCSIFH-MKNLKTLSFSGCNGPPSTASS 482 (830)
Q Consensus 415 l~-~L~~L~L~~~~~l~~~~~~----l~~l-~~L~~L~L~~n~i~~-----l~~~l~~-l~~L~~L~L~~~~~~~~~~~~ 482 (830)
++ +|++|++++|......+.. +... ++|++|+|++|.+.. ++..+.. .++|++|+|++|++.......
T Consensus 165 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~ 244 (362)
T 3goz_A 165 IPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLEN 244 (362)
T ss_dssp SCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHH
T ss_pred CCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHH
Confidence 44 6666666666554443322 2233 466666666666654 3444444 236666666666544321110
Q ss_pred ccCCCCCCCCccCeecCCCCCCCC------CccccccCCCCCCCEEeCCCCCCc
Q 044302 483 LMLPSLSGLCSLTKLDLSDCGLGE------GAILSDIGNLHSLKALYLSENNFV 530 (830)
Q Consensus 483 ~~l~~l~~l~~L~~L~Ls~~~l~~------~~~~~~l~~l~~L~~L~L~~n~l~ 530 (830)
. ...+..+++|+.|++++|.+.. ..++..+..+++|+.|++++|.+.
T Consensus 245 l-~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~ 297 (362)
T 3goz_A 245 L-KLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297 (362)
T ss_dssp H-HHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred H-HHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence 0 0113445556666666655221 012233445555666666666554
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.71 E-value=2e-16 Score=162.97 Aligned_cols=175 Identities=22% Similarity=0.238 Sum_probs=137.5
Q ss_pred CCcEEEecCCcccccCcccCCCCCccEEecCCccCcccccccccCCCCCCEEeccCCCCCCccCcccCCCCCccEEecCC
Q 044302 370 GLSELYLDGTSITEVPSSIELLPGIELLNLNDCKNLVRLPRSINGLKALKTLSLSGCCKLENVPDTLGQVESLEELDISG 449 (830)
Q Consensus 370 ~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~ 449 (830)
+.+.++++++.++.+|..+. ++|+.|+|++|......+..+.++++|++|++++|......+..+..+++|++|++++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 34567777777777776654 5788888888887777777788888888888888887777777788888888888888
Q ss_pred CcccCCCc-ccccCCCCcEEEcCCCCCCCCCCccccCCCCCCCCccCeecCCCCCCCCCccccccCCCCCCCEEeCCCCC
Q 044302 450 TATRRPPC-SIFHMKNLKTLSFSGCNGPPSTASSLMLPSLSGLCSLTKLDLSDCGLGEGAILSDIGNLHSLKALYLSENN 528 (830)
Q Consensus 450 n~i~~l~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~ 528 (830)
|.+..++. .+..+++|++|+|++|++... ....+..+++|++|++++|.+. ...+..+..+++|+.|+|++|.
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-----~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~ 166 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSL-----PSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQ 166 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCC-----CTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCc-----ChhHhccCCcccEEECcCCcCC-ccCHHHcCcCcCCCEEECCCCc
Confidence 88887764 456788888888888875531 1222678889999999999887 4444568899999999999999
Q ss_pred CcccCc-ccCCCCccCEeecccccc
Q 044302 529 FVTLPA-SISGLFNLEYLKLEDCKR 552 (830)
Q Consensus 529 l~~lp~-~l~~L~~L~~L~L~~c~~ 552 (830)
+..+|. .+..+++|++|+|++|+.
T Consensus 167 l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 167 LQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred CCccCHHHHhCCCCCCEEEeeCCce
Confidence 998875 678899999999999863
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.71 E-value=4.4e-17 Score=173.61 Aligned_cols=207 Identities=20% Similarity=0.191 Sum_probs=118.9
Q ss_pred ccCCcEEeccCCCCCCCCcccc--ccCccCcEEeecCCCCCCcCCcccCCCCCcEEEecCCcccccCcccCCCCCccEEe
Q 044302 321 LSGLILLTLKYCKNLSSLPVTI--SSLKCLRTLKLSGCSKLKKFPQIVGMEGLSELYLDGTSITEVPSSIELLPGIELLN 398 (830)
Q Consensus 321 l~~L~~L~L~~~~~~~~~~~~l--~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~ 398 (830)
+++|++|++++|......|..+ ..+++|++|++++|......+.+.. ..+..+++|+.|+
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~------------------~~~~~~~~L~~L~ 151 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAE------------------LQQWLKPGLKVLS 151 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHH------------------HHTTBCSCCCEEE
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHH------------------HHhhhccCCCEEE
Confidence 4557777777776666666555 6666666666666655543332110 1122344444444
Q ss_pred cCCccCcccccccccCCCCCCEEeccCCCCCCc--c--CcccCCCCCccEEecCCCcccCCCcc----cccCCCCcEEEc
Q 044302 399 LNDCKNLVRLPRSINGLKALKTLSLSGCCKLEN--V--PDTLGQVESLEELDISGTATRRPPCS----IFHMKNLKTLSF 470 (830)
Q Consensus 399 L~~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~--~--~~~l~~l~~L~~L~L~~n~i~~l~~~----l~~l~~L~~L~L 470 (830)
|++|......+..+..+++|++|++++|..... + +..++.+++|++|++++|.++.++.. +..+++|++|+|
T Consensus 152 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~L 231 (310)
T 4glp_A 152 IAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDL 231 (310)
T ss_dssp EECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEEC
T ss_pred eeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEEC
Confidence 444444444444445555555555555544321 1 12234556666666666666544432 345677777777
Q ss_pred CCCCCCCCCCccccCCCCCCCCccCeecCCCCCCCCCccccccCCCCCCCEEeCCCCCCcccCcccCCCCccCEeecccc
Q 044302 471 SGCNGPPSTASSLMLPSLSGLCSLTKLDLSDCGLGEGAILSDIGNLHSLKALYLSENNFVTLPASISGLFNLEYLKLEDC 550 (830)
Q Consensus 471 ~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~c 550 (830)
++|++....+. .+..+..+++|++|++++|+++ .+|..+. ++|+.|+|++|+++.+|. +..+++|+.|+|++|
T Consensus 232 s~N~l~~~~p~--~~~~~~~~~~L~~L~Ls~N~l~--~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 232 SHNSLRATVNP--SAPRCMWSSALNSLNLSFAGLE--QVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGN 304 (310)
T ss_dssp TTSCCCCCCCS--CCSSCCCCTTCCCEECCSSCCC--SCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSST
T ss_pred CCCCCCccchh--hHHhccCcCcCCEEECCCCCCC--chhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEECcCC
Confidence 77765432111 0112223368888888888886 3565553 788888888888888765 677888888888888
Q ss_pred cc
Q 044302 551 KR 552 (830)
Q Consensus 551 ~~ 552 (830)
+.
T Consensus 305 ~l 306 (310)
T 4glp_A 305 PF 306 (310)
T ss_dssp TT
T ss_pred CC
Confidence 63
No 94
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.70 E-value=1.5e-18 Score=191.21 Aligned_cols=235 Identities=15% Similarity=0.139 Sum_probs=106.1
Q ss_pred CCCCCceeEEeeeCCccccc----ccccccCCCCccEEecCCCC--CCc-cCCcccccCcccEEeccCcccccccCCCCC
Q 044302 224 FIEVPNLEVLDLEGCTRLRE----IHSSLVRHNKLILLNLKGCT--SLT-TLPGEIFMKSLKTLVLSGCLKLRKFPHVGG 296 (830)
Q Consensus 224 ~~~l~~L~~L~L~~~~~l~~----~~~~l~~l~~L~~L~L~~c~--~l~-~lp~~~~l~~L~~L~L~~~~~~~~~~~~~~ 296 (830)
+..+++|++|++++|..... ++..+..+++|++|++++|. .+. .+|..+ ..+...+.
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~----------------~~l~~~l~ 91 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEAL----------------RLLLQALL 91 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHH----------------HHHHHHHT
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHH----------------HHHHHHHh
Confidence 44566777777777644333 33345566677777776641 111 122211 00011123
Q ss_pred ccccceEeecccccccc-----cccchhcccCCcEEeccCCCCCCCCcc----ccccC---------ccCcEEeecCCCC
Q 044302 297 SMECLQELFLDETDIKE-----MPLSIEHLSGLILLTLKYCKNLSSLPV----TISSL---------KCLRTLKLSGCSK 358 (830)
Q Consensus 297 ~l~~L~~L~L~~~~i~~-----l~~~l~~l~~L~~L~L~~~~~~~~~~~----~l~~l---------~~L~~L~L~~~~~ 358 (830)
.+++|++|++++|.+.. ++..+..+++|++|+|++|......+. .+..+ ++|++|++++|..
T Consensus 92 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l 171 (386)
T 2ca6_A 92 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL 171 (386)
T ss_dssp TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC
T ss_pred hCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCC
Confidence 33444444444444443 344444455555555555443221111 12222 4555555555443
Q ss_pred C-CcCC----cccCCCCCcEEEecCCccc------ccCcccCCCCCccEEecCCccCc----ccccccccCCCCCCEEec
Q 044302 359 L-KKFP----QIVGMEGLSELYLDGTSIT------EVPSSIELLPGIELLNLNDCKNL----VRLPRSINGLKALKTLSL 423 (830)
Q Consensus 359 ~-~~~~----~~~~l~~L~~L~L~~~~i~------~l~~~~~~l~~L~~L~L~~~~~l----~~l~~~~~~l~~L~~L~L 423 (830)
. ..++ .+..+++|+.|++++|.+. -++..+..+++|+.|+|++|... ..+|..+..+++|++|+|
T Consensus 172 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L 251 (386)
T 2ca6_A 172 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL 251 (386)
T ss_dssp TGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEEC
T ss_pred CcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEEC
Confidence 3 1222 1223445555555555544 12224445555555555555543 344445555555555555
Q ss_pred cCCCCCCc----cCccc--CCCCCccEEecCCCcccC-----CCccc-ccCCCCcEEEcCCCC
Q 044302 424 SGCCKLEN----VPDTL--GQVESLEELDISGTATRR-----PPCSI-FHMKNLKTLSFSGCN 474 (830)
Q Consensus 424 ~~~~~l~~----~~~~l--~~l~~L~~L~L~~n~i~~-----l~~~l-~~l~~L~~L~L~~~~ 474 (830)
++|..... ++..+ +.+++|++|+|++|.+.. +|..+ .++++|++|++++|+
T Consensus 252 ~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 252 NDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp TTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred CCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 55554332 23333 224555555555555543 44444 234444444444444
No 95
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.66 E-value=2.1e-15 Score=155.31 Aligned_cols=152 Identities=16% Similarity=0.128 Sum_probs=77.6
Q ss_pred cceEeecccccccccccchhcccCCcEEeccCCCCCCCCccccccCccCcEEeecCCCCCCcCCc-ccCCCCCcEEEecC
Q 044302 300 CLQELFLDETDIKEMPLSIEHLSGLILLTLKYCKNLSSLPVTISSLKCLRTLKLSGCSKLKKFPQ-IVGMEGLSELYLDG 378 (830)
Q Consensus 300 ~L~~L~L~~~~i~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~L~~ 378 (830)
..+.++++++.++.+|..+. ++|+.|++++|......+..+..+++|++|++++|......+. +..+++|+.|+|++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 34566666667776666543 4666677766666665555666666666666666554443333 34455555555555
Q ss_pred CcccccCc-ccCCCCCccEEecCCccCcccccccccCCCCCCEEeccCCCCCCccCcccCCCCCccEEecCCCccc
Q 044302 379 TSITEVPS-SIELLPGIELLNLNDCKNLVRLPRSINGLKALKTLSLSGCCKLENVPDTLGQVESLEELDISGTATR 453 (830)
Q Consensus 379 ~~i~~l~~-~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~n~i~ 453 (830)
|.++.++. .+..+++|+.|+|++|......+..+..+++|++|++++|......+..++.+++|++|+|++|.+.
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 168 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC
Confidence 55554442 2344445555555444443333333344444444444444333333333444444444444444444
No 96
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.66 E-value=1.4e-17 Score=181.58 Aligned_cols=247 Identities=15% Similarity=0.127 Sum_probs=151.8
Q ss_pred eeccccccccc-ccchhcccCCcEEeccCCCCCCCCc----cccccCc-cCcEEeecCCCCCCcCCc-ccC-----CCCC
Q 044302 304 LFLDETDIKEM-PLSIEHLSGLILLTLKYCKNLSSLP----VTISSLK-CLRTLKLSGCSKLKKFPQ-IVG-----MEGL 371 (830)
Q Consensus 304 L~L~~~~i~~l-~~~l~~l~~L~~L~L~~~~~~~~~~----~~l~~l~-~L~~L~L~~~~~~~~~~~-~~~-----l~~L 371 (830)
+.++.|.+... |..+...++|++|++++|......+ ..+..++ +|++|++++|......+. +.. .++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 46777777744 4444555569999999888766655 6677787 888888888876554332 222 2788
Q ss_pred cEEEecCCcccccCcc-----cCCC-CCccEEecCCccCccccccc----ccC-CCCCCEEeccCCCCCCc----cCccc
Q 044302 372 SELYLDGTSITEVPSS-----IELL-PGIELLNLNDCKNLVRLPRS----ING-LKALKTLSLSGCCKLEN----VPDTL 436 (830)
Q Consensus 372 ~~L~L~~~~i~~l~~~-----~~~l-~~L~~L~L~~~~~l~~l~~~----~~~-l~~L~~L~L~~~~~l~~----~~~~l 436 (830)
++|+|++|.++..+.. +..+ ++|+.|+|++|......+.. +.. .++|++|++++|..... ++..+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 8888888888755432 4445 78888888888765554433 333 25788888888766532 33334
Q ss_pred CCCC-CccEEecCCCcccCCCc-----ccccC-CCCcEEEcCCCCCCCCCCccccCCCCCC-CCccCeecCCCCCCCCCc
Q 044302 437 GQVE-SLEELDISGTATRRPPC-----SIFHM-KNLKTLSFSGCNGPPSTASSLMLPSLSG-LCSLTKLDLSDCGLGEGA 508 (830)
Q Consensus 437 ~~l~-~L~~L~L~~n~i~~l~~-----~l~~l-~~L~~L~L~~~~~~~~~~~~~~l~~l~~-l~~L~~L~Ls~~~l~~~~ 508 (830)
..++ +|++|++++|.+..... .+..+ ++|++|+|++|.+....... ....+.. .++|++|++++|.+.+..
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~-l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAE-LAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHH-HHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHH-HHHHHhcCCCCceEEECcCCCCCcHH
Confidence 4444 78888888877764432 23334 47777777777644311100 0011222 246777777777776422
Q ss_pred ---cccccCCCCCCCEEeCCCCCCc--------ccCcccCCCCccCEeeccccc
Q 044302 509 ---ILSDIGNLHSLKALYLSENNFV--------TLPASISGLFNLEYLKLEDCK 551 (830)
Q Consensus 509 ---~~~~l~~l~~L~~L~L~~n~l~--------~lp~~l~~L~~L~~L~L~~c~ 551 (830)
+...+..+++|+.|++++|.+. .++..+..+++|+.|++++|+
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 1334566677777777777633 333455666677777777764
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.66 E-value=5e-16 Score=177.32 Aligned_cols=195 Identities=21% Similarity=0.240 Sum_probs=151.9
Q ss_pred hhhCCC-----CCceEEEcCcccCCCccccccCcceEEEecCCCCCCCCCCCCCCceEEEccCCChhhcccCCCCCCccc
Q 044302 134 AFSLMT-----NLRLLKIGNVQLPKGLEYLSNKLRLLVWHQYPLKSLPSNLQLDKIVEFEMCYSRIEELWKGIKPLNTLK 208 (830)
Q Consensus 134 ~f~~l~-----~Lr~L~l~~~~l~~~~~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~ 208 (830)
+|.+++ +|+.|++++|.+.+....++++|++|++++|.++.+| -.+++|++|++++|.|+.+|. +.. +|+
T Consensus 49 ~~~~l~~C~~~~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~ 123 (571)
T 3cvr_A 49 AVSLLKECLINQFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE-LPA--SLK 123 (571)
T ss_dssp HHHHHHHHHHTTCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC-CCT--TCC
T ss_pred hhhhccccccCCccEEEeCCCCCCccCHhHcCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch-hhc--CCC
Confidence 555554 8999999999887644445678999999999999999 357899999999999999887 655 899
Q ss_pred EEEccCCCCCCCCCCCCCCCceeEEeeeCCcccccccccccCCCCccEEecCCCCCCccCCcccccCcccEEeccCcccc
Q 044302 209 VMKLSHSENLIKTPNFIEVPNLEVLDLEGCTRLREIHSSLVRHNKLILLNLKGCTSLTTLPGEIFMKSLKTLVLSGCLKL 288 (830)
Q Consensus 209 ~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~~~~~ 288 (830)
+|+|++|.... +|. .+++|++|++++|. +..+|. .+++|++|++++ +.++.+|. +. ++|+.|+|++|.+.
T Consensus 124 ~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~-N~L~~lp~-l~-~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 124 HLDVDNNQLTM-LPE--LPALLEYINADNNQ-LTMLPE---LPTSLEVLSVRN-NQLTFLPE-LP-ESLEALDVSTNLLE 193 (571)
T ss_dssp EEECCSSCCSC-CCC--CCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCS-SCCSCCCC-CC-TTCCEEECCSSCCS
T ss_pred EEECCCCcCCC-CCC--cCccccEEeCCCCc-cCcCCC---cCCCcCEEECCC-CCCCCcch-hh-CCCCEEECcCCCCC
Confidence 99999987444 555 78899999999864 455766 578899999998 56777887 44 88999999988765
Q ss_pred cccCCCCCccccc-------eEeecccccccccccchhcccCCcEEeccCCCCCCCCccccccCcc
Q 044302 289 RKFPHVGGSMECL-------QELFLDETDIKEMPLSIEHLSGLILLTLKYCKNLSSLPVTISSLKC 347 (830)
Q Consensus 289 ~~~~~~~~~l~~L-------~~L~L~~~~i~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~ 347 (830)
.+|. +.. +| +.|++++|.++.+|..+..+++|+.|+|++|......|..+..++.
T Consensus 194 -~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 194 -SLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp -SCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred -chhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 5555 443 66 8888988888888888888888888888888887777776665543
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.65 E-value=1e-15 Score=161.23 Aligned_cols=165 Identities=27% Similarity=0.392 Sum_probs=109.6
Q ss_pred CCcEEEecCCcccccCcccCCCCCccEEecCCccCcccccccccCCCCCCEEeccCCCCCCccCcccCCCCCccEEecCC
Q 044302 370 GLSELYLDGTSITEVPSSIELLPGIELLNLNDCKNLVRLPRSINGLKALKTLSLSGCCKLENVPDTLGQVESLEELDISG 449 (830)
Q Consensus 370 ~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~ 449 (830)
+|+.|++++|.+..++. +..+++|+.|++++|......+ +..+++|++|++++|.... ++ .+..+++|++|++++
T Consensus 47 ~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~ 121 (291)
T 1h6t_A 47 SIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEH 121 (291)
T ss_dssp TCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTT
T ss_pred cccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCC
Confidence 34444444444444432 4444555555555554433222 4555556666665554433 22 366677777777777
Q ss_pred CcccCCCcccccCCCCcEEEcCCCCCCCCCCccccCCCCCCCCccCeecCCCCCCCCCccccccCCCCCCCEEeCCCCCC
Q 044302 450 TATRRPPCSIFHMKNLKTLSFSGCNGPPSTASSLMLPSLSGLCSLTKLDLSDCGLGEGAILSDIGNLHSLKALYLSENNF 529 (830)
Q Consensus 450 n~i~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l 529 (830)
|.+..++ .+..+++|+.|++++|+... ++.+..+++|++|++++|.+.+ ++. +..+++|+.|++++|.+
T Consensus 122 n~i~~~~-~l~~l~~L~~L~l~~n~l~~-------~~~l~~l~~L~~L~L~~N~l~~--~~~-l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 122 NGISDIN-GLVHLPQLESLYLGNNKITD-------ITVLSRLTKLDTLSLEDNQISD--IVP-LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp SCCCCCG-GGGGCTTCCEEECCSSCCCC-------CGGGGGCTTCSEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCC
T ss_pred CcCCCCh-hhcCCCCCCEEEccCCcCCc-------chhhccCCCCCEEEccCCcccc--chh-hcCCCccCEEECCCCcC
Confidence 7777663 56677888888888877543 2457788888888888888863 333 88899999999999999
Q ss_pred cccCcccCCCCccCEeeccccc
Q 044302 530 VTLPASISGLFNLEYLKLEDCK 551 (830)
Q Consensus 530 ~~lp~~l~~L~~L~~L~L~~c~ 551 (830)
+.+|. +..+++|+.|++++|+
T Consensus 191 ~~l~~-l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 191 SDLRA-LAGLKNLDVLELFSQE 211 (291)
T ss_dssp CBCGG-GTTCTTCSEEEEEEEE
T ss_pred CCChh-hccCCCCCEEECcCCc
Confidence 98874 8899999999999986
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.62 E-value=5e-15 Score=169.06 Aligned_cols=178 Identities=20% Similarity=0.195 Sum_probs=86.7
Q ss_pred CCcEEeccCCCCCCCCccccccCccCcEEeecCCCCCCcCCcccCCCCCcEEEecCCcccccCcccCCCCCccEEecCCc
Q 044302 323 GLILLTLKYCKNLSSLPVTISSLKCLRTLKLSGCSKLKKFPQIVGMEGLSELYLDGTSITEVPSSIELLPGIELLNLNDC 402 (830)
Q Consensus 323 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~ 402 (830)
+|+.|++++|.... +|..+ +++|+.|++++|... .+| ..+++|+.|++++|.++.+|. +.. +|+.|+|++|
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip--~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP--ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC--CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc--cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC
Confidence 56666666655433 44433 245555555555433 333 334555555555555555544 322 4555555544
Q ss_pred cCcccccccccCCCCCCEEeccCCCCCCccCcccCCCCCccEEecCCCcccCCCcccccCCCCcEEEcCCCCCCCCCCcc
Q 044302 403 KNLVRLPRSINGLKALKTLSLSGCCKLENVPDTLGQVESLEELDISGTATRRPPCSIFHMKNLKTLSFSGCNGPPSTASS 482 (830)
Q Consensus 403 ~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~n~i~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~ 482 (830)
.+.. +| . .+++|+.|++++|.++.+|. .+++|++|+|++|++..
T Consensus 131 ~l~~-lp------------------------~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~----- 174 (571)
T 3cvr_A 131 QLTM-LP------------------------E---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTF----- 174 (571)
T ss_dssp CCSC-CC------------------------C---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-----
T ss_pred cCCC-CC------------------------C---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCC-----
Confidence 4333 33 3 34455555555555554443 34455555555554332
Q ss_pred ccCCCCCCCCccCeecCCCCCCCCCccccccCCCCCC-------CEEeCCCCCCcccCcccCCCCccCEeecccccccc
Q 044302 483 LMLPSLSGLCSLTKLDLSDCGLGEGAILSDIGNLHSL-------KALYLSENNFVTLPASISGLFNLEYLKLEDCKRLQ 554 (830)
Q Consensus 483 ~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L-------~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~c~~l~ 554 (830)
+|.+. ++|+.|+|++|.++. +|. +.. +| +.|+|++|.|+.+|..+..+++|+.|+|++|+.-.
T Consensus 175 --lp~l~--~~L~~L~Ls~N~L~~--lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 175 --LPELP--ESLEALDVSTNLLES--LPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp --CCCCC--TTCCEEECCSSCCSS--CCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCH
T ss_pred --cchhh--CCCCEEECcCCCCCc--hhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCC
Confidence 11122 455555555555542 333 322 44 66666666666666655556666666666665433
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.60 E-value=6.3e-15 Score=170.20 Aligned_cols=175 Identities=23% Similarity=0.332 Sum_probs=97.2
Q ss_pred cccCccCcEEeecCCCCCCcCCcccCCCCCcEEEecCCcccccCcccCCCCCccEEecCCccCcccccccccCCCCCCEE
Q 044302 342 ISSLKCLRTLKLSGCSKLKKFPQIVGMEGLSELYLDGTSITEVPSSIELLPGIELLNLNDCKNLVRLPRSINGLKALKTL 421 (830)
Q Consensus 342 l~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L 421 (830)
+..+++|+.|++++|.. ..++.+..+++|+.|+|++|.+..++. +..+++|+.|+|++|.... ++ .+..+++|+.|
T Consensus 39 ~~~L~~L~~L~l~~n~i-~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDI-KSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSL 114 (605)
T ss_dssp HHHHTTCCCCBCTTCCC-CCCTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEE
T ss_pred hhcCCCCCEEECcCCCC-CCChHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEE
Confidence 45677777777777653 334556666777777777777666655 6666666666666665433 22 45555666666
Q ss_pred eccCCCCCCccCcccCCCCCccEEecCCCcccCCCcccccCCCCcEEEcCCCCCCCCCCccccCCCCCCCCccCeecCCC
Q 044302 422 SLSGCCKLENVPDTLGQVESLEELDISGTATRRPPCSIFHMKNLKTLSFSGCNGPPSTASSLMLPSLSGLCSLTKLDLSD 501 (830)
Q Consensus 422 ~L~~~~~l~~~~~~l~~l~~L~~L~L~~n~i~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~ 501 (830)
+|++|.... + ..+..+++|+.|+|++|.+..+ ..+..+++|+.|+|++|.+.. ++.+..+++|+.|+|++
T Consensus 115 ~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~-------~~~l~~l~~L~~L~Ls~ 184 (605)
T 1m9s_A 115 SLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISD-------IVPLAGLTKLQNLYLSK 184 (605)
T ss_dssp ECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCC-------CGGGTTCTTCCEEECCS
T ss_pred EecCCCCCC-C-ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCC-------chhhccCCCCCEEECcC
Confidence 666655443 1 2355555555555555555554 345555555555555555332 11144555555555555
Q ss_pred CCCCCCccccccCCCCCCCEEeCCCCCCcccC
Q 044302 502 CGLGEGAILSDIGNLHSLKALYLSENNFVTLP 533 (830)
Q Consensus 502 ~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp 533 (830)
|.+.+ + ..+..+++|+.|+|++|.+...|
T Consensus 185 N~i~~--l-~~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 185 NHISD--L-RALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp SCCCB--C-GGGTTCTTCSEEECCSEEEECCC
T ss_pred CCCCC--C-hHHccCCCCCEEEccCCcCcCCc
Confidence 55542 2 23455555555555555554433
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.59 E-value=1e-14 Score=153.42 Aligned_cols=150 Identities=20% Similarity=0.213 Sum_probs=89.9
Q ss_pred cccCccCcEEeecCCCCCCcCCcccCCCCCcEEEecCCcccccCcccCCCCCccEEecCCccCcccccccccCCCCCCEE
Q 044302 342 ISSLKCLRTLKLSGCSKLKKFPQIVGMEGLSELYLDGTSITEVPSSIELLPGIELLNLNDCKNLVRLPRSINGLKALKTL 421 (830)
Q Consensus 342 l~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L 421 (830)
+..+++|+.|++++|...... .+..+++|+.|++++|.++.++. +..+++|+.|++++|..... ..+..+++|+.|
T Consensus 64 ~~~l~~L~~L~L~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L 139 (291)
T 1h6t_A 64 IQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESL 139 (291)
T ss_dssp GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEE
T ss_pred HhcCCCCCEEEccCCccCCCc-ccccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCCcCCCC--hhhcCCCCCCEE
Confidence 344444444444444333222 24445555555555555555443 55556666666666554432 245556666666
Q ss_pred eccCCCCCCccCcccCCCCCccEEecCCCcccCCCcccccCCCCcEEEcCCCCCCCCCCccccCCCCCCCCccCeecCCC
Q 044302 422 SLSGCCKLENVPDTLGQVESLEELDISGTATRRPPCSIFHMKNLKTLSFSGCNGPPSTASSLMLPSLSGLCSLTKLDLSD 501 (830)
Q Consensus 422 ~L~~~~~l~~~~~~l~~l~~L~~L~L~~n~i~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~ 501 (830)
++++|..... ..+..+++|++|++++|.+..++. +..+++|+.|++++|.+.. ++.+..+++|+.|++++
T Consensus 140 ~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~-------l~~l~~l~~L~~L~l~~ 209 (291)
T 1h6t_A 140 YLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISD-------LRALAGLKNLDVLELFS 209 (291)
T ss_dssp ECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCB-------CGGGTTCTTCSEEEEEE
T ss_pred EccCCcCCcc--hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCC-------ChhhccCCCCCEEECcC
Confidence 6666655443 456667777777777777776665 6777777888887776542 34467788888888888
Q ss_pred CCCC
Q 044302 502 CGLG 505 (830)
Q Consensus 502 ~~l~ 505 (830)
|.+.
T Consensus 210 n~i~ 213 (291)
T 1h6t_A 210 QECL 213 (291)
T ss_dssp EEEE
T ss_pred Cccc
Confidence 8775
No 102
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.58 E-value=1.5e-14 Score=142.86 Aligned_cols=151 Identities=18% Similarity=0.249 Sum_probs=80.2
Q ss_pred hcccCCcEEeccCCCCCCCCccccccCccCcEEeecCCCCCCcCCcccCCCCCcEEEecCCcccc-cCcccCCCCCccEE
Q 044302 319 EHLSGLILLTLKYCKNLSSLPVTISSLKCLRTLKLSGCSKLKKFPQIVGMEGLSELYLDGTSITE-VPSSIELLPGIELL 397 (830)
Q Consensus 319 ~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~-l~~~~~~l~~L~~L 397 (830)
..+++|+.|++++|... .+| .+..+++|++|++++| ....++.+..+++|+.|++++|.++. .+..+..+++|+.|
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNI-HATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESC-CCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCC-CCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 34444555555544433 222 3455555555555555 33334445555666666666666653 45555666666666
Q ss_pred ecCCccCcccccccccCCCCCCEEeccCCCCCCccCcccCCCCCccEEecCCCcccCCCcccccCCCCcEEEcCCCC
Q 044302 398 NLNDCKNLVRLPRSINGLKALKTLSLSGCCKLENVPDTLGQVESLEELDISGTATRRPPCSIFHMKNLKTLSFSGCN 474 (830)
Q Consensus 398 ~L~~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~n~i~~l~~~l~~l~~L~~L~L~~~~ 474 (830)
++++|......+..+..+++|++|++++|.....++ .+..+++|++|++++|.+..++ .+..+++|++|++++|+
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC-
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcc
Confidence 666666555555555666666666666655333343 3455555555555555555444 44445555555555444
No 103
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.58 E-value=2.7e-14 Score=142.36 Aligned_cols=172 Identities=19% Similarity=0.139 Sum_probs=113.3
Q ss_pred EEEecCCcccccCcccCCCCCccEEecCCccCcccccccccCCCCCCEEeccCCCCCCccCcccCCCCCccEEecCCCcc
Q 044302 373 ELYLDGTSITEVPSSIELLPGIELLNLNDCKNLVRLPRSINGLKALKTLSLSGCCKLENVPDTLGQVESLEELDISGTAT 452 (830)
Q Consensus 373 ~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~n~i 452 (830)
.++.++++++.+|..+ .++|+.|++++|......+..+..+++|++|++++|......+..+..+++|++|++++|.+
T Consensus 11 ~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence 5566666666666543 45677777777766655555566777777777777766655555567777777777777777
Q ss_pred cCCCcc-cccCCCCcEEEcCCCCCCCCCCccccCCCCCCCCccCeecCCCCCCCCCccccccCCCCCCCEEeCCCCCCcc
Q 044302 453 RRPPCS-IFHMKNLKTLSFSGCNGPPSTASSLMLPSLSGLCSLTKLDLSDCGLGEGAILSDIGNLHSLKALYLSENNFVT 531 (830)
Q Consensus 453 ~~l~~~-l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~ 531 (830)
..++.. +..+++|++|++++|++... ....+..+++|+.|++++|.++ ...+..+..+++|+.|++++|.+.
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~-----~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~- 161 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTNQLQSL-----PDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWD- 161 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCC-----CTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSCCBC-
T ss_pred CccCHhHhcCccCCCEEEcCCCcCccc-----CHhHhccCCcCCEEECCCCccc-eeCHHHhccCCCccEEEecCCCee-
Confidence 766554 45677777777777764421 1122566777777777777775 333444677778888888877554
Q ss_pred cCcccCCCCccCEeeccccccccccCC
Q 044302 532 LPASISGLFNLEYLKLEDCKRLQSLPQ 558 (830)
Q Consensus 532 lp~~l~~L~~L~~L~L~~c~~l~~lp~ 558 (830)
..+++|+.|+++.|..-..+|.
T Consensus 162 -----~~~~~l~~L~~~~n~~~g~ip~ 183 (208)
T 2o6s_A 162 -----CTCPGIRYLSEWINKHSGVVRN 183 (208)
T ss_dssp -----CCTTTTHHHHHHHHHCTTTBBC
T ss_pred -----cCCCCHHHHHHHHHhCCceeec
Confidence 3456777777777765555553
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.57 E-value=8.2e-15 Score=169.22 Aligned_cols=171 Identities=22% Similarity=0.276 Sum_probs=94.0
Q ss_pred CccccceEeecccccccccccchhcccCCcEEeccCCCCCCCCccccccCccCcEEeecCCCCCCcCCcccCCCCCcEEE
Q 044302 296 GSMECLQELFLDETDIKEMPLSIEHLSGLILLTLKYCKNLSSLPVTISSLKCLRTLKLSGCSKLKKFPQIVGMEGLSELY 375 (830)
Q Consensus 296 ~~l~~L~~L~L~~~~i~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~ 375 (830)
..+++|+.|+++++.+..++ .+..+++|+.|+|++|......+ +..++ +|+.|+
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~-----------------------~L~~L~ 93 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLK-----------------------NLGWLF 93 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCT-----------------------TCCEEE
T ss_pred hcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh--hccCC-----------------------CCCEEE
Confidence 34555555555555555554 34555555555555554433322 44444 455555
Q ss_pred ecCCcccccCcccCCCCCccEEecCCccCcccccccccCCCCCCEEeccCCCCCCccCcccCCCCCccEEecCCCcccCC
Q 044302 376 LDGTSITEVPSSIELLPGIELLNLNDCKNLVRLPRSINGLKALKTLSLSGCCKLENVPDTLGQVESLEELDISGTATRRP 455 (830)
Q Consensus 376 L~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~n~i~~l 455 (830)
|++|.+..++ .+..+++|+.|+|++|.... + ..+..+++|+.|+|++|..... ..+..+++|+.|+|++|.+..+
T Consensus 94 Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~ 168 (605)
T 1m9s_A 94 LDENKIKDLS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI 168 (605)
T ss_dssp CCSSCCCCCT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCC
T ss_pred CcCCCCCCCh-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCc
Confidence 5555554443 34555555555555554433 2 2345556666666666554433 4455666666666666666655
Q ss_pred CcccccCCCCcEEEcCCCCCCCCCCccccCCCCCCCCccCeecCCCCCCC
Q 044302 456 PCSIFHMKNLKTLSFSGCNGPPSTASSLMLPSLSGLCSLTKLDLSDCGLG 505 (830)
Q Consensus 456 ~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~ 505 (830)
+. +..+++|+.|+|++|.+.. ++.+..+++|+.|+|++|.+.
T Consensus 169 ~~-l~~l~~L~~L~Ls~N~i~~-------l~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 169 VP-LAGLTKLQNLYLSKNHISD-------LRALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp GG-GTTCTTCCEEECCSSCCCB-------CGGGTTCTTCSEEECCSEEEE
T ss_pred hh-hccCCCCCEEECcCCCCCC-------ChHHccCCCCCEEEccCCcCc
Confidence 44 6666666666666665432 244666677777777777664
No 105
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.56 E-value=3.6e-14 Score=142.65 Aligned_cols=149 Identities=25% Similarity=0.333 Sum_probs=101.7
Q ss_pred cEEEecCCcccccCcccCCCCCccEEecCCccCcccccccccCCCCCCEEeccCCCCCCccCcccCCCCCccEEecCCCc
Q 044302 372 SELYLDGTSITEVPSSIELLPGIELLNLNDCKNLVRLPRSINGLKALKTLSLSGCCKLENVPDTLGQVESLEELDISGTA 451 (830)
Q Consensus 372 ~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~n~ 451 (830)
+.+++++++++.+|..+. ++|+.|++++|.+....+..+..+++|+.|++++|......|..|..+++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 467777788888877543 677888888777666555667777777777777777666667777777777777777777
Q ss_pred ccCCCcccccCCCCcEEEcCCCCCCCCCCccccCCCCCCCCccCeecCCCCCCCCCccccccCCCCCCCEEeCCCCCCcc
Q 044302 452 TRRPPCSIFHMKNLKTLSFSGCNGPPSTASSLMLPSLSGLCSLTKLDLSDCGLGEGAILSDIGNLHSLKALYLSENNFVT 531 (830)
Q Consensus 452 i~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~ 531 (830)
+..+|..+ +.++++|+.|+|++|.+. ...+..+..+++|+.|+|++|.++.
T Consensus 92 l~~l~~~~----------------------------f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~ 142 (220)
T 2v9t_B 92 ITELPKSL----------------------------FEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQT 142 (220)
T ss_dssp CCCCCTTT----------------------------TTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCccCHhH----------------------------ccCCCCCCEEECCCCCCC-EeCHHHcCCCCCCCEEECCCCcCCE
Confidence 76665432 334445555555555554 3445567777777777777777777
Q ss_pred cCc-ccCCCCccCEeeccccc
Q 044302 532 LPA-SISGLFNLEYLKLEDCK 551 (830)
Q Consensus 532 lp~-~l~~L~~L~~L~L~~c~ 551 (830)
++. .+..+++|++|+|++|+
T Consensus 143 ~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 143 IAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CCTTTTTTCTTCCEEECCSSC
T ss_pred ECHHHHhCCCCCCEEEeCCCC
Confidence 665 36677778888887775
No 106
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.56 E-value=1e-14 Score=144.03 Aligned_cols=149 Identities=22% Similarity=0.271 Sum_probs=81.8
Q ss_pred CCcEEEecCCcccccCcccCCCCCccEEecCCccCcccccccccCCCCCCEEeccCCCCCCccCcccCCCCCccEEecCC
Q 044302 370 GLSELYLDGTSITEVPSSIELLPGIELLNLNDCKNLVRLPRSINGLKALKTLSLSGCCKLENVPDTLGQVESLEELDISG 449 (830)
Q Consensus 370 ~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~ 449 (830)
+|+.|++++|.+..+| .+..+++|+.|++++|.. ..+ ..+..+++|++|++++|......+..++.+++|++|++++
T Consensus 45 ~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~-~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~ 121 (197)
T 4ezg_A 45 SLTYITLANINVTDLT-GIEYAHNIKDLTINNIHA-TNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121 (197)
T ss_dssp TCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCC-SCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCS
T ss_pred CccEEeccCCCccChH-HHhcCCCCCEEEccCCCC-Ccc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecC
Confidence 3444444444444444 344455555555555522 222 2445555666666666555555555556666666666666
Q ss_pred CcccC-CCcccccCCCCcEEEcCCCCCCCCCCccccCCCCCCCCccCeecCCCCCCCCCccccccCCCCCCCEEeCCCCC
Q 044302 450 TATRR-PPCSIFHMKNLKTLSFSGCNGPPSTASSLMLPSLSGLCSLTKLDLSDCGLGEGAILSDIGNLHSLKALYLSENN 528 (830)
Q Consensus 450 n~i~~-l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~ 528 (830)
|.+.. .+..+..+++|++|++++|+... .++.+..+++|++|++++|.+.+ ++ .+..+++|+.|++++|+
T Consensus 122 n~i~~~~~~~l~~l~~L~~L~L~~n~~i~------~~~~l~~l~~L~~L~l~~n~i~~--~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 122 SAHDDSILTKINTLPKVNSIDLSYNGAIT------DIMPLKTLPELKSLNIQFDGVHD--YR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp SBCBGGGHHHHTTCSSCCEEECCSCTBCC------CCGGGGGCSSCCEEECTTBCCCC--CT-TGGGCSSCCEEEECBC-
T ss_pred CccCcHhHHHHhhCCCCCEEEccCCCCcc------ccHhhcCCCCCCEEECCCCCCcC--hH-HhccCCCCCEEEeeCcc
Confidence 66653 44455566666666666665221 12345666777777777777653 32 56677777777777777
Q ss_pred Cc
Q 044302 529 FV 530 (830)
Q Consensus 529 l~ 530 (830)
+.
T Consensus 193 i~ 194 (197)
T 4ezg_A 193 IG 194 (197)
T ss_dssp --
T ss_pred cC
Confidence 64
No 107
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.56 E-value=6.3e-17 Score=185.84 Aligned_cols=203 Identities=17% Similarity=0.122 Sum_probs=126.1
Q ss_pred CccccceEeecccccccccccchhcccCCcEEeccCCC-------------CCCCCccccccCccCcEEe-ecCCCCCCc
Q 044302 296 GSMECLQELFLDETDIKEMPLSIEHLSGLILLTLKYCK-------------NLSSLPVTISSLKCLRTLK-LSGCSKLKK 361 (830)
Q Consensus 296 ~~l~~L~~L~L~~~~i~~l~~~l~~l~~L~~L~L~~~~-------------~~~~~~~~l~~l~~L~~L~-L~~~~~~~~ 361 (830)
...++|+.|++++|.++.+|..++.+++|+.|++++|. .....|..++.+++|+.|+ ++.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~---- 421 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY---- 421 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH----
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcc----
Confidence 45677788888888888888888888888888876543 2223334444455554444 22210
Q ss_pred CCcccCCCCCcEEEecCCcccccCcccCCCCCccEEecCCccCcccccccccCCCCCCEEeccCCCCCCccCcccCCCCC
Q 044302 362 FPQIVGMEGLSELYLDGTSITEVPSSIELLPGIELLNLNDCKNLVRLPRSINGLKALKTLSLSGCCKLENVPDTLGQVES 441 (830)
Q Consensus 362 ~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~ 441 (830)
+.+|+.+.+.+|.+..++. ..|+.|++++|.... +|. ++.+++
T Consensus 422 ------~~~L~~l~l~~n~i~~l~~-----------------------------~~L~~L~Ls~n~l~~-lp~-~~~l~~ 464 (567)
T 1dce_A 422 ------LDDLRSKFLLENSVLKMEY-----------------------------ADVRVLHLAHKDLTV-LCH-LEQLLL 464 (567)
T ss_dssp ------HHHHHHHHHHHHHHHHHHH-----------------------------TTCSEEECTTSCCSS-CCC-GGGGTT
T ss_pred ------cchhhhhhhhcccccccCc-----------------------------cCceEEEecCCCCCC-CcC-cccccc
Confidence 0112222222222222221 135666666664443 454 677777
Q ss_pred ccEEecCCCcccCCCcccccCCCCcEEEcCCCCCCCCCCccccCCCCCCCCccCeecCCCCCCCCCcc-ccccCCCCCCC
Q 044302 442 LEELDISGTATRRPPCSIFHMKNLKTLSFSGCNGPPSTASSLMLPSLSGLCSLTKLDLSDCGLGEGAI-LSDIGNLHSLK 520 (830)
Q Consensus 442 L~~L~L~~n~i~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~-~~~l~~l~~L~ 520 (830)
|+.|+|++|.+..+|..++.+++|+.|+|++|.+.. +|.++.+++|+.|+|++|.++. .. |..+..+++|+
T Consensus 465 L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~-------lp~l~~l~~L~~L~Ls~N~l~~-~~~p~~l~~l~~L~ 536 (567)
T 1dce_A 465 VTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN-------VDGVANLPRLQELLLCNNRLQQ-SAAIQPLVSCPRLV 536 (567)
T ss_dssp CCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-------CGGGTTCSSCCEEECCSSCCCS-SSTTGGGGGCTTCC
T ss_pred CcEeecCcccccccchhhhcCCCCCEEECCCCCCCC-------CcccCCCCCCcEEECCCCCCCC-CCCcHHHhcCCCCC
Confidence 777777777777777777777777777777776542 3356677777777777777763 33 77788888888
Q ss_pred EEeCCCCCCcccCcccC----CCCccCEeec
Q 044302 521 ALYLSENNFVTLPASIS----GLFNLEYLKL 547 (830)
Q Consensus 521 ~L~L~~n~l~~lp~~l~----~L~~L~~L~L 547 (830)
.|+|++|.++.+|+.+. .+++|+.|++
T Consensus 537 ~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 537 LLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp EEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred EEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 88888888887765442 3667777653
No 108
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.56 E-value=3.8e-14 Score=141.32 Aligned_cols=171 Identities=16% Similarity=0.133 Sum_probs=97.9
Q ss_pred eEEEcCcccCCCccccccCcceEEEecCCCCCCCCCC--CCCCceEEEccCCChhhcccC-CCCCCcccEEEccCCCCCC
Q 044302 143 LLKIGNVQLPKGLEYLSNKLRLLVWHQYPLKSLPSNL--QLDKIVEFEMCYSRIEELWKG-IKPLNTLKVMKLSHSENLI 219 (830)
Q Consensus 143 ~L~l~~~~l~~~~~~l~~~Lr~L~l~~~~l~~lp~~~--~l~~L~~L~L~~n~i~~l~~~-~~~l~~L~~L~L~~~~~~~ 219 (830)
.++++++.+......++++|++|++++|.++.+|... .+++|++|++++|.++.++.. +..+++|++|+|++|....
T Consensus 11 ~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 90 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90 (208)
T ss_dssp EEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred EEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCc
Confidence 3445555544444444556777777777777666543 667777777777777766543 4667777777777765443
Q ss_pred CCCC-CCCCCceeEEeeeCCcccccccccccCCCCccEEecCCCCCCccCCcccc--cCcccEEeccCcccccccCCCCC
Q 044302 220 KTPN-FIEVPNLEVLDLEGCTRLREIHSSLVRHNKLILLNLKGCTSLTTLPGEIF--MKSLKTLVLSGCLKLRKFPHVGG 296 (830)
Q Consensus 220 ~~~~-~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~c~~l~~lp~~~~--l~~L~~L~L~~~~~~~~~~~~~~ 296 (830)
..+. +..+++|++|++++|......+..+..+++|++|++++ +.++.+|...+ +++|++|++++|... +
T Consensus 91 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~ 162 (208)
T 2o6s_A 91 LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQ-NQLKSVPDGVFDRLTSLQYIWLHDNPWD-------C 162 (208)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSCCBC-------C
T ss_pred cCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCC-CccceeCHHHhccCCCccEEEecCCCee-------c
Confidence 3332 56667777777766543322333356666666666666 34555554432 566666666665332 3
Q ss_pred ccccceEeeccccccc-ccccchhcc
Q 044302 297 SMECLQELFLDETDIK-EMPLSIEHL 321 (830)
Q Consensus 297 ~l~~L~~L~L~~~~i~-~l~~~l~~l 321 (830)
.+++|+.|.+..|.+. .+|..++.+
T Consensus 163 ~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 163 TCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp CTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred CCCCHHHHHHHHHhCCceeeccCccc
Confidence 3445555555555554 455444433
No 109
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.54 E-value=9.6e-14 Score=140.51 Aligned_cols=150 Identities=20% Similarity=0.187 Sum_probs=93.8
Q ss_pred CcEEEecCCcccccCcccCCCCCccEEecCCccCcccccccccCCCCCCEEeccCCCCCCccCcccCCCCCccEEecCCC
Q 044302 371 LSELYLDGTSITEVPSSIELLPGIELLNLNDCKNLVRLPRSINGLKALKTLSLSGCCKLENVPDTLGQVESLEELDISGT 450 (830)
Q Consensus 371 L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~n 450 (830)
.+.++.+++.++.+|..+. ++|+.|+|++|.+....|..+..+++|++|++++|......+..+..+++|+.|+|++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 3466677777777776442 55666666665555544555555555555555554443333333444444444444444
Q ss_pred cccCCCcccccCCCCcEEEcCCCCCCCCCCccccCCCCCCCCccCeecCCCCCCCCCccccccCCCCCCCEEeCCCCCCc
Q 044302 451 ATRRPPCSIFHMKNLKTLSFSGCNGPPSTASSLMLPSLSGLCSLTKLDLSDCGLGEGAILSDIGNLHSLKALYLSENNFV 530 (830)
Q Consensus 451 ~i~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~ 530 (830)
.++.++. ..+..+++|++|++++|.+. .+|..+..+++|+.|+|++|.+.
T Consensus 99 ~l~~l~~----------------------------~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~L~~N~l~ 148 (229)
T 3e6j_A 99 QLTVLPS----------------------------AVFDRLVHLKELFMCCNKLT--ELPRGIERLTHLTHLALDQNQLK 148 (229)
T ss_dssp CCCCCCT----------------------------TTTTTCTTCCEEECCSSCCC--SCCTTGGGCTTCSEEECCSSCCC
T ss_pred cCCccCh----------------------------hHhCcchhhCeEeccCCccc--ccCcccccCCCCCEEECCCCcCC
Confidence 4443332 12556677777777777775 36777888889999999999888
Q ss_pred ccCc-ccCCCCccCEeecccccc
Q 044302 531 TLPA-SISGLFNLEYLKLEDCKR 552 (830)
Q Consensus 531 ~lp~-~l~~L~~L~~L~L~~c~~ 552 (830)
.+|. .+..+++|+.|+|++|+.
T Consensus 149 ~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 149 SIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCB
T ss_pred ccCHHHHhCCCCCCEEEeeCCCc
Confidence 8874 477888999999998863
No 110
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.53 E-value=1.4e-14 Score=149.92 Aligned_cols=159 Identities=23% Similarity=0.250 Sum_probs=99.2
Q ss_pred EecCCcccccCcccCCCCCccEEecCCccCcccccccccCCCCCCEEeccCCCCCCccCcccCCCCCccEEecCCCcccC
Q 044302 375 YLDGTSITEVPSSIELLPGIELLNLNDCKNLVRLPRSINGLKALKTLSLSGCCKLENVPDTLGQVESLEELDISGTATRR 454 (830)
Q Consensus 375 ~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~n~i~~ 454 (830)
+++++.++.++ .+..+++|+.|++++|... .++ .+..+++|+.|++++|......+ +..+++|++|++++|.+..
T Consensus 25 ~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~ 99 (263)
T 1xeu_A 25 NLGKQSVTDLV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN 99 (263)
T ss_dssp HHTCSCTTSEE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC
T ss_pred HhcCCCccccc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC
Confidence 33334444333 2344444555555444322 222 34455555555555554433322 5666666666666666666
Q ss_pred CCcccccCCCCcEEEcCCCCCCCCCCccccCCCCCCCCccCeecCCCCCCCCCccccccCCCCCCCEEeCCCCCCcccCc
Q 044302 455 PPCSIFHMKNLKTLSFSGCNGPPSTASSLMLPSLSGLCSLTKLDLSDCGLGEGAILSDIGNLHSLKALYLSENNFVTLPA 534 (830)
Q Consensus 455 l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~ 534 (830)
++.... ++|++|++++|.+.. ++.+..+++|+.|++++|.+++ ++ .+..+++|+.|++++|.+..+ .
T Consensus 100 l~~~~~--~~L~~L~L~~N~l~~-------~~~l~~l~~L~~L~Ls~N~i~~--~~-~l~~l~~L~~L~L~~N~i~~~-~ 166 (263)
T 1xeu_A 100 LNGIPS--ACLSRLFLDNNELRD-------TDSLIHLKNLEILSIRNNKLKS--IV-MLGFLSKLEVLDLHGNEITNT-G 166 (263)
T ss_dssp CTTCCC--SSCCEEECCSSCCSB-------SGGGTTCTTCCEEECTTSCCCB--CG-GGGGCTTCCEEECTTSCCCBC-T
T ss_pred cCcccc--CcccEEEccCCccCC-------ChhhcCcccccEEECCCCcCCC--Ch-HHccCCCCCEEECCCCcCcch-H
Confidence 654333 777777777776442 2446777888888888888763 33 577888888888888888877 5
Q ss_pred ccCCCCccCEeeccccc
Q 044302 535 SISGLFNLEYLKLEDCK 551 (830)
Q Consensus 535 ~l~~L~~L~~L~L~~c~ 551 (830)
.+..+++|+.|++++|+
T Consensus 167 ~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 167 GLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp TSTTCCCCCEEEEEEEE
T ss_pred HhccCCCCCEEeCCCCc
Confidence 67888888899888885
No 111
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.52 E-value=1e-13 Score=139.34 Aligned_cols=149 Identities=18% Similarity=0.189 Sum_probs=92.8
Q ss_pred cEEEecCCcccccCcccCCCCCccEEecCCccCccccc-ccccCCCCCCEEeccCCCCCCccCcccCCCCCccEEecCCC
Q 044302 372 SELYLDGTSITEVPSSIELLPGIELLNLNDCKNLVRLP-RSINGLKALKTLSLSGCCKLENVPDTLGQVESLEELDISGT 450 (830)
Q Consensus 372 ~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~l~-~~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~n 450 (830)
+.++++++.++.+|..+ .+.++.|+|++|.+....+ ..+..+++|++|++++|.+....+..+..+++|++|+|++|
T Consensus 14 ~~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 36777777777777644 3345677777776555433 34566666666666666655555556666666666666666
Q ss_pred cccCCCcccccCCCCcEEEcCCCCCCCCCCccccCCCCCCCCccCeecCCCCCCCCCccccccCCCCCCCEEeCCCCCCc
Q 044302 451 ATRRPPCSIFHMKNLKTLSFSGCNGPPSTASSLMLPSLSGLCSLTKLDLSDCGLGEGAILSDIGNLHSLKALYLSENNFV 530 (830)
Q Consensus 451 ~i~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~ 530 (830)
.+..++.. .+.++++|++|++++|.+. ...+..+..+++|+.|+|++|.++
T Consensus 92 ~l~~~~~~----------------------------~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~ 142 (220)
T 2v70_A 92 RLENVQHK----------------------------MFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT 142 (220)
T ss_dssp CCCCCCGG----------------------------GGTTCSSCCEEECTTSCCC-CBCTTSSTTCTTCSEEECTTSCCC
T ss_pred ccCccCHh----------------------------HhcCCcCCCEEECCCCcCC-eECHhHcCCCccCCEEECCCCcCC
Confidence 66554432 1344455555555555554 344566667777777777777777
Q ss_pred cc-CcccCCCCccCEeeccccc
Q 044302 531 TL-PASISGLFNLEYLKLEDCK 551 (830)
Q Consensus 531 ~l-p~~l~~L~~L~~L~L~~c~ 551 (830)
.+ |..+..+++|++|+|++|+
T Consensus 143 ~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 143 TVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp CBCTTTTTTCTTCCEEECCSCC
T ss_pred EECHHHhcCCCCCCEEEecCcC
Confidence 66 5566777777777777775
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.51 E-value=7.4e-14 Score=151.87 Aligned_cols=171 Identities=21% Similarity=0.152 Sum_probs=106.9
Q ss_pred cEEEecCCcccccCcccCCCCCccEEecCCccCccccccccc-CCCCCCEEeccCCCCCCccCcccCCCCCccEEecCCC
Q 044302 372 SELYLDGTSITEVPSSIELLPGIELLNLNDCKNLVRLPRSIN-GLKALKTLSLSGCCKLENVPDTLGQVESLEELDISGT 450 (830)
Q Consensus 372 ~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~l~~~~~-~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~n 450 (830)
+.++++++.++.+|..+ .+.++.|+|++|.+....+..+. .+++|+.|+|++|.+....+..|..+++|++|+|++|
T Consensus 21 ~~l~c~~~~l~~iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 35666666666666543 23466777777666555555555 6777777777777666666666777777777777777
Q ss_pred cccCCCc-ccccCCCCcEEEcCCCCCCCCCCccccCCCCCCCCccCeecCCCCCCCCCccccc-c---CCCCCCCEEeCC
Q 044302 451 ATRRPPC-SIFHMKNLKTLSFSGCNGPPSTASSLMLPSLSGLCSLTKLDLSDCGLGEGAILSD-I---GNLHSLKALYLS 525 (830)
Q Consensus 451 ~i~~l~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~-l---~~l~~L~~L~L~ 525 (830)
.+..++. .+..+++|++|+|++|++... ....+.++++|+.|+|++|.+.. ++.. + ..+++|+.|+|+
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~-----~~~~~~~l~~L~~L~L~~N~l~~--l~~~~~~~~~~l~~L~~L~L~ 171 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVV-----DRNAFEDMAQLQKLYLSQNQISR--FPVELIKDGNKLPKLMLLDLS 171 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEE-----CTTTTTTCTTCCEEECCSSCCCS--CCGGGTC----CTTCCEEECC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEE-----CHHHhCCcccCCEEECCCCcCCe--eCHHHhcCcccCCcCCEEECC
Confidence 7765544 355567777777776664321 12236666777777777777653 3332 3 457777777777
Q ss_pred CCCCcccCc-ccCCCCc--cCEeeccccc
Q 044302 526 ENNFVTLPA-SISGLFN--LEYLKLEDCK 551 (830)
Q Consensus 526 ~n~l~~lp~-~l~~L~~--L~~L~L~~c~ 551 (830)
+|.|..+|. .+..++. |+.|+|.+|+
T Consensus 172 ~N~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 172 SNKLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp SSCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred CCCCCccCHHHhhhccHhhcceEEecCCC
Confidence 777777763 3455555 3667777765
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.51 E-value=2.1e-14 Score=148.61 Aligned_cols=151 Identities=20% Similarity=0.279 Sum_probs=102.0
Q ss_pred CCCCCcEEEecCCcccccCcccCCCCCccEEecCCccCcccccccccCCCCCCEEeccCCCCCCccCcccCCCCCccEEe
Q 044302 367 GMEGLSELYLDGTSITEVPSSIELLPGIELLNLNDCKNLVRLPRSINGLKALKTLSLSGCCKLENVPDTLGQVESLEELD 446 (830)
Q Consensus 367 ~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~ 446 (830)
.+++|+.|++++|.++.++ .+..+++|+.|++++|......+ +..+++|++|++++|.... ++... . ++|++|+
T Consensus 39 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~~~-~-~~L~~L~ 112 (263)
T 1xeu_A 39 ELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNGIP-S-ACLSRLF 112 (263)
T ss_dssp HHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTTCC-C-SSCCEEE
T ss_pred hcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCccc-c-CcccEEE
Confidence 3444455555555555554 45555556666665554443322 5566666666666665443 33222 2 7788888
Q ss_pred cCCCcccCCCcccccCCCCcEEEcCCCCCCCCCCccccCCCCCCCCccCeecCCCCCCCCCccccccCCCCCCCEEeCCC
Q 044302 447 ISGTATRRPPCSIFHMKNLKTLSFSGCNGPPSTASSLMLPSLSGLCSLTKLDLSDCGLGEGAILSDIGNLHSLKALYLSE 526 (830)
Q Consensus 447 L~~n~i~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~ 526 (830)
+++|.+..++ .+..+++|+.|++++|++.. ++.+..+++|+.|++++|.+.+ + ..+..+++|+.|++++
T Consensus 113 L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~-------~~~l~~l~~L~~L~L~~N~i~~--~-~~l~~l~~L~~L~l~~ 181 (263)
T 1xeu_A 113 LDNNELRDTD-SLIHLKNLEILSIRNNKLKS-------IVMLGFLSKLEVLDLHGNEITN--T-GGLTRLKKVNWIDLTG 181 (263)
T ss_dssp CCSSCCSBSG-GGTTCTTCCEEECTTSCCCB-------CGGGGGCTTCCEEECTTSCCCB--C-TTSTTCCCCCEEEEEE
T ss_pred ccCCccCCCh-hhcCcccccEEECCCCcCCC-------ChHHccCCCCCEEECCCCcCcc--h-HHhccCCCCCEEeCCC
Confidence 8888888765 57788888888888887553 3457788899999999999874 2 6788899999999999
Q ss_pred CCCcccCc
Q 044302 527 NNFVTLPA 534 (830)
Q Consensus 527 n~l~~lp~ 534 (830)
|.+...|.
T Consensus 182 N~~~~~~~ 189 (263)
T 1xeu_A 182 QKCVNEPV 189 (263)
T ss_dssp EEEECCCE
T ss_pred CcccCCcc
Confidence 99887764
No 114
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.47 E-value=3.1e-13 Score=135.77 Aligned_cols=148 Identities=16% Similarity=0.126 Sum_probs=76.3
Q ss_pred EeecccccccccccchhcccCCcEEeccCCCCCCCCccccccCccCcEEeecCCCCCCcCCcccCCCCCcEEEecCCccc
Q 044302 303 ELFLDETDIKEMPLSIEHLSGLILLTLKYCKNLSSLPVTISSLKCLRTLKLSGCSKLKKFPQIVGMEGLSELYLDGTSIT 382 (830)
Q Consensus 303 ~L~L~~~~i~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~i~ 382 (830)
.++++++.++.+|..+. ++|+.|++++|......+..+..+++|+.|++++|......
T Consensus 15 ~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~-------------------- 72 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA-------------------- 72 (220)
T ss_dssp EEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEEC--------------------
T ss_pred EEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcC--------------------
Confidence 45555666666665432 45555555555444333334444444444444444333322
Q ss_pred ccCcccCCCCCccEEecCCccCcccccccccCCCCCCEEeccCCCCCCccCcccCCCCCccEEecCCCcccCCCc-cccc
Q 044302 383 EVPSSIELLPGIELLNLNDCKNLVRLPRSINGLKALKTLSLSGCCKLENVPDTLGQVESLEELDISGTATRRPPC-SIFH 461 (830)
Q Consensus 383 ~l~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~n~i~~l~~-~l~~ 461 (830)
|..+..+++|+.|+|++|.+....+..|.++++|++|++++|......+..+..+++|+.|+|++|.+..++. .+..
T Consensus 73 --~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 150 (220)
T 2v9t_B 73 --PDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSP 150 (220)
T ss_dssp --TTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred --HHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhC
Confidence 3334444444444444444443333334555555555555555555555555566666666666666665544 2445
Q ss_pred CCCCcEEEcCCCC
Q 044302 462 MKNLKTLSFSGCN 474 (830)
Q Consensus 462 l~~L~~L~L~~~~ 474 (830)
+++|+.|+|++|+
T Consensus 151 l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 151 LRAIQTMHLAQNP 163 (220)
T ss_dssp CTTCCEEECCSSC
T ss_pred CCCCCEEEeCCCC
Confidence 6666666666665
No 115
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.47 E-value=1.6e-15 Score=174.16 Aligned_cols=119 Identities=15% Similarity=0.163 Sum_probs=67.0
Q ss_pred CcEEeecCCCCCCcCCcccCCCCCcEEEecCCcccccCcccCCCCCccEEecCCccCcccccccccCCCCCCEEeccCCC
Q 044302 348 LRTLKLSGCSKLKKFPQIVGMEGLSELYLDGTSITEVPSSIELLPGIELLNLNDCKNLVRLPRSINGLKALKTLSLSGCC 427 (830)
Q Consensus 348 L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~L~~~~ 427 (830)
|+.|++++|.... +|.+..+++|+.|+|++|.++.+|..++.+++|+.|+|++|.... +| .++.+++|+.|++++|.
T Consensus 443 L~~L~Ls~n~l~~-lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 443 VRVLHLAHKDLTV-LCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNR 519 (567)
T ss_dssp CSEEECTTSCCSS-CCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSC
T ss_pred ceEEEecCCCCCC-CcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCC
Confidence 4455555543332 344555555666666666666666666666666666666665443 44 55666666666666665
Q ss_pred CCCcc-CcccCCCCCccEEecCCCcccCCCcccc----cCCCCcEEE
Q 044302 428 KLENV-PDTLGQVESLEELDISGTATRRPPCSIF----HMKNLKTLS 469 (830)
Q Consensus 428 ~l~~~-~~~l~~l~~L~~L~L~~n~i~~l~~~l~----~l~~L~~L~ 469 (830)
..... |..++.+++|+.|+|++|.+..+|.... .+++|+.|+
T Consensus 520 l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 520 LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 55444 5666666666666666666655544322 245555554
No 116
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.46 E-value=4.3e-13 Score=134.74 Aligned_cols=148 Identities=15% Similarity=0.127 Sum_probs=84.5
Q ss_pred ceEEEecCCCCCCCCCCCCCCceEEEccCCChhhccc--CCCCCCcccEEEccCCCCCCCCC-CCCCCCceeEEeeeCCc
Q 044302 163 RLLVWHQYPLKSLPSNLQLDKIVEFEMCYSRIEELWK--GIKPLNTLKVMKLSHSENLIKTP-NFIEVPNLEVLDLEGCT 239 (830)
Q Consensus 163 r~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~--~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~L~~~~ 239 (830)
+.++++++.++.+|..+ ...+++|+|++|.|+.++. .+..+++|++|+|++|......+ .|.++++|++|++++|.
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 45666666666666654 3345677777777776632 35667777777777766443333 46666667777776654
Q ss_pred ccccccccccCCCCccEEecCCCCCCccCC-cccc-cCcccEEeccCcccccccCCCCCccccceEeeccccccc
Q 044302 240 RLREIHSSLVRHNKLILLNLKGCTSLTTLP-GEIF-MKSLKTLVLSGCLKLRKFPHVGGSMECLQELFLDETDIK 312 (830)
Q Consensus 240 ~l~~~~~~l~~l~~L~~L~L~~c~~l~~lp-~~~~-l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~ 312 (830)
.....+..+..+++|++|++++ +.++.++ ..+. +++|++|+|++|.+....|..+..+++|+.|++++|.+.
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRS-NRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTT-SCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred cCccCHhHhcCCcCCCEEECCC-CcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 4434444466666666666666 3344332 2222 555555555555555444555555555555555555544
No 117
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.46 E-value=3.2e-13 Score=146.82 Aligned_cols=170 Identities=22% Similarity=0.265 Sum_probs=98.9
Q ss_pred ceEEEecCCCCCCCCCCCCCCceEEEccCCChhhcccC-CC-CCCcccEEEccCCCCCCCCC-CCCCCCceeEEeeeCCc
Q 044302 163 RLLVWHQYPLKSLPSNLQLDKIVEFEMCYSRIEELWKG-IK-PLNTLKVMKLSHSENLIKTP-NFIEVPNLEVLDLEGCT 239 (830)
Q Consensus 163 r~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~-~~-~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~L~~~~ 239 (830)
+.++++++.++.+|..+ ...+++|+|++|.|+.++.. +. .+++|++|+|++|......+ .|..+++|++|+|++|.
T Consensus 21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp TEEECCSSCCSSCCSSC-CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCccC-CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 56777777777777655 34567777777777776543 33 66666666666665433332 35555556666555543
Q ss_pred ccccccccccCCCCccEEecCCCCCCccCCcccccCcccEEeccCcccccccCCCCCccccceEeecccccccccccch-
Q 044302 240 RLREIHSSLVRHNKLILLNLKGCTSLTTLPGEIFMKSLKTLVLSGCLKLRKFPHVGGSMECLQELFLDETDIKEMPLSI- 318 (830)
Q Consensus 240 ~l~~~~~~l~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~l- 318 (830)
.....+..+.. +++|++|+|++|.+....+..+..+++|+.|+|++|.+..+|..+
T Consensus 100 l~~~~~~~~~~-----------------------l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~ 156 (361)
T 2xot_A 100 LHTLDEFLFSD-----------------------LQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELI 156 (361)
T ss_dssp CCEECTTTTTT-----------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGT
T ss_pred CCcCCHHHhCC-----------------------CcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHh
Confidence 22222223444 445555555555555555566677777777777777777777644
Q ss_pred ---hcccCCcEEeccCCCCCCCCccccccCccC--cEEeecCC
Q 044302 319 ---EHLSGLILLTLKYCKNLSSLPVTISSLKCL--RTLKLSGC 356 (830)
Q Consensus 319 ---~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L--~~L~L~~~ 356 (830)
..+++|+.|+|++|......+..+..++.+ +.|++.+|
T Consensus 157 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 157 KDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp C----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred cCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCC
Confidence 456677777777766555444455555542 44444444
No 118
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.44 E-value=1.7e-12 Score=131.31 Aligned_cols=126 Identities=17% Similarity=0.133 Sum_probs=95.9
Q ss_pred cEEeecCCCCCCcCCcccCCCCCcEEEecCCccccc-CcccCCCCCccEEecCCccCcccccccccCCCCCCEEeccCCC
Q 044302 349 RTLKLSGCSKLKKFPQIVGMEGLSELYLDGTSITEV-PSSIELLPGIELLNLNDCKNLVRLPRSINGLKALKTLSLSGCC 427 (830)
Q Consensus 349 ~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~L~~~~ 427 (830)
+.++.+++. +..+|.. -.++|+.|+|++|.+..+ |..+..+++|+.|+|++|.+....+..+..+++|+.|++++|.
T Consensus 22 ~~v~c~~~~-l~~ip~~-~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 22 TTVDCRSKR-HASVPAG-IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TEEECTTSC-CSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEeEccCCC-cCccCCC-CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 445554433 3333331 126788888888888876 5567888889999998888765555667889999999999988
Q ss_pred CCCccCcccCCCCCccEEecCCCcccCCCcccccCCCCcEEEcCCCCCC
Q 044302 428 KLENVPDTLGQVESLEELDISGTATRRPPCSIFHMKNLKTLSFSGCNGP 476 (830)
Q Consensus 428 ~l~~~~~~l~~l~~L~~L~L~~n~i~~l~~~l~~l~~L~~L~L~~~~~~ 476 (830)
.....+..+..+++|++|++++|.+..+|..+..+++|+.|+|++|++.
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~ 148 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLK 148 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCC
T ss_pred CCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCC
Confidence 7777677788999999999999999988888887888888888777643
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.38 E-value=5.7e-13 Score=127.73 Aligned_cols=128 Identities=23% Similarity=0.232 Sum_probs=69.4
Q ss_pred CCccEEecCCccCc-ccccccccCCCCCCEEeccCCCCCCccCcccCCCCCccEEecCCCcccC-CCcccccCCCCcEEE
Q 044302 392 PGIELLNLNDCKNL-VRLPRSINGLKALKTLSLSGCCKLENVPDTLGQVESLEELDISGTATRR-PPCSIFHMKNLKTLS 469 (830)
Q Consensus 392 ~~L~~L~L~~~~~l-~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~n~i~~-l~~~l~~l~~L~~L~ 469 (830)
++|+.|++++|... ..+|..+..+++|+.|++++|..... ..+..+++|++|++++|.+.. +|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 44555555555443 34444455556666666666554333 556666777777777777665 444444466666666
Q ss_pred cCCCCCCCCCCccccCCCCCCCCccCeecCCCCCCCCCccccccCCCCCCCEEeCCCCCCcccCc----ccCCCCccCEe
Q 044302 470 FSGCNGPPSTASSLMLPSLSGLCSLTKLDLSDCGLGEGAILSDIGNLHSLKALYLSENNFVTLPA----SISGLFNLEYL 545 (830)
Q Consensus 470 L~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~----~l~~L~~L~~L 545 (830)
+++|.+... ..+..+..+++|+.|++++|.+..+|. .+..+++|++|
T Consensus 102 Ls~N~l~~~-----------------------------~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L 152 (168)
T 2ell_A 102 LSGNKLKDI-----------------------------STLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYL 152 (168)
T ss_dssp CBSSSCCSS-----------------------------GGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEE
T ss_pred ccCCccCcc-----------------------------hhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEe
Confidence 666553210 011334445555555555555555554 45555555566
Q ss_pred ecccc
Q 044302 546 KLEDC 550 (830)
Q Consensus 546 ~L~~c 550 (830)
++++|
T Consensus 153 ~l~~n 157 (168)
T 2ell_A 153 DGYDR 157 (168)
T ss_dssp TTEET
T ss_pred cCCCC
Confidence 55555
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.33 E-value=2.2e-12 Score=123.62 Aligned_cols=133 Identities=18% Similarity=0.177 Sum_probs=72.9
Q ss_pred CCCceEEEccCCChh--hcccCCCCCCcccEEEccCCCCCCCCCCCCCCCceeEEeeeCCcccccccccccCCCCccEEe
Q 044302 181 LDKIVEFEMCYSRIE--ELWKGIKPLNTLKVMKLSHSENLIKTPNFIEVPNLEVLDLEGCTRLREIHSSLVRHNKLILLN 258 (830)
Q Consensus 181 l~~L~~L~L~~n~i~--~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~ 258 (830)
+++|++|++++|.++ .+|..+..+++|++|++++|... .++.+..+++|++|++++|.....+|..+..+++|++|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCC-CCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCC-ChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 345666666666666 56656666677777777776533 235566677777777776554444555555566666666
Q ss_pred cCCCCCCccCC--cccc-cCcccEEeccCcccccccC---CCCCccccceEeecccccccccc
Q 044302 259 LKGCTSLTTLP--GEIF-MKSLKTLVLSGCLKLRKFP---HVGGSMECLQELFLDETDIKEMP 315 (830)
Q Consensus 259 L~~c~~l~~lp--~~~~-l~~L~~L~L~~~~~~~~~~---~~~~~l~~L~~L~L~~~~i~~l~ 315 (830)
+++ +.++.+| ..+. +++|++|++++|.+....+ ..+..+++|+.|++++|.+..+|
T Consensus 102 Ls~-N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 102 LSG-NKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp CBS-SSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred ccC-CccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 666 3444443 2222 4555555555544332222 23444455555555555444444
No 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.33 E-value=1.2e-12 Score=122.79 Aligned_cols=127 Identities=22% Similarity=0.208 Sum_probs=70.2
Q ss_pred CCCCEEeccCCCCC-CccCcccCCCCCccEEecCCCcccCCCcccccCCCCcEEEcCCCCCCCCCCccccCCC-CCCCCc
Q 044302 416 KALKTLSLSGCCKL-ENVPDTLGQVESLEELDISGTATRRPPCSIFHMKNLKTLSFSGCNGPPSTASSLMLPS-LSGLCS 493 (830)
Q Consensus 416 ~~L~~L~L~~~~~l-~~~~~~l~~l~~L~~L~L~~n~i~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~-l~~l~~ 493 (830)
++|+.|++++|... ..+|..+..+++|++|++++|.+..+ ..+..+++|++|++++|.+... +|. +..+++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~------~~~~~~~l~~ 89 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGG------LEVLAEKCPN 89 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSC------THHHHHHCTT
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccch------HHHHhhhCCC
Confidence 34444444444443 34444445555555555555555544 3444555555555555553321 111 334556
Q ss_pred cCeecCCCCCCCCCccccccCCCCCCCEEeCCCCCCcccCc----ccCCCCccCEeeccc
Q 044302 494 LTKLDLSDCGLGEGAILSDIGNLHSLKALYLSENNFVTLPA----SISGLFNLEYLKLED 549 (830)
Q Consensus 494 L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~----~l~~L~~L~~L~L~~ 549 (830)
|++|++++|.++....+..+..+++|++|++++|.++.+|. .+..+++|+.|++++
T Consensus 90 L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 90 LTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 66666666666532233567777777777777777777665 466677777777653
No 122
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.31 E-value=1e-11 Score=133.10 Aligned_cols=259 Identities=12% Similarity=0.043 Sum_probs=138.1
Q ss_pred CCCceEEEccCCChhhcccCCCCCCcccEEEccCCCCCCCCCCCCC--------CCceeEEeeeCCccccccc-ccccCC
Q 044302 181 LDKIVEFEMCYSRIEELWKGIKPLNTLKVMKLSHSENLIKTPNFIE--------VPNLEVLDLEGCTRLREIH-SSLVRH 251 (830)
Q Consensus 181 l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~--------l~~L~~L~L~~~~~l~~~~-~~l~~l 251 (830)
+.+|++|||++|+|.......+.++.++.+.+..+ ......|.+ +++|++|+|.+ .+..++ .+|..+
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~--~I~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~~ 123 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN--FVPAYAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFKGC 123 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT--EECTTTTEEEETTEEEECTTCCC-CBCT--TCCEECTTTTTTC
T ss_pred hccCeEEecCcceeEEecCcccccccccccccccc--ccCHHHhcccccccccccCCCcEEECCc--cccchhHHHhhcC
Confidence 55677777777777632222223333455555554 122234666 77777777776 344443 456677
Q ss_pred CCccEEecCCCCCCccCCcccc--cCcccEEeccCcccccccCCCCCccccceEeecccccccccc-cchhcccCCc-EE
Q 044302 252 NKLILLNLKGCTSLTTLPGEIF--MKSLKTLVLSGCLKLRKFPHVGGSMECLQELFLDETDIKEMP-LSIEHLSGLI-LL 327 (830)
Q Consensus 252 ~~L~~L~L~~c~~l~~lp~~~~--l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~-~~l~~l~~L~-~L 327 (830)
++|+.|++.+ +.+..++...+ +.++..+.+...... .....+. ..+..+..|+ .+
T Consensus 124 ~~L~~l~l~~-n~i~~i~~~aF~~~~~l~~l~~~~~~~~--------------------~~~~~i~~~~f~~~~~L~~~i 182 (329)
T 3sb4_A 124 DNLKICQIRK-KTAPNLLPEALADSVTAIFIPLGSSDAY--------------------RFKNRWEHFAFIEGEPLETTI 182 (329)
T ss_dssp TTCCEEEBCC-SSCCEECTTSSCTTTCEEEECTTCTHHH--------------------HTSTTTTTSCEEESCCCEEEE
T ss_pred cccceEEcCC-CCccccchhhhcCCCceEEecCcchhhh--------------------hccccccccccccccccceeE
Confidence 7777777776 44555555544 333333333221000 0000000 0122222232 22
Q ss_pred eccCCCCCCCCccc----cccCccCcEEeecCCCCCCcCCccc-CCCCCcEEEecCCcccccCcc-cCCCCCccEEecCC
Q 044302 328 TLKYCKNLSSLPVT----ISSLKCLRTLKLSGCSKLKKFPQIV-GMEGLSELYLDGTSITEVPSS-IELLPGIELLNLND 401 (830)
Q Consensus 328 ~L~~~~~~~~~~~~----l~~l~~L~~L~L~~~~~~~~~~~~~-~l~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~L~~ 401 (830)
.+.... .++.. -....++..+.+.+.-....+..+. .+++|+.|+|.+|.++.+|.. |..+++|+.|+|.+
T Consensus 183 ~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~ 259 (329)
T 3sb4_A 183 QVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPH 259 (329)
T ss_dssp EECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCT
T ss_pred EecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCc
Confidence 222111 11111 0123444555554432111111111 256788888888888888764 77888888888887
Q ss_pred ccCcccccccccCCCCCC-EEeccCCCCCCccCcccCCCCCccEEecCCCcccCCCc-ccccCCCCcEEE
Q 044302 402 CKNLVRLPRSINGLKALK-TLSLSGCCKLENVPDTLGQVESLEELDISGTATRRPPC-SIFHMKNLKTLS 469 (830)
Q Consensus 402 ~~~l~~l~~~~~~l~~L~-~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~n~i~~l~~-~l~~l~~L~~L~ 469 (830)
+ ....-+.+|.++++|+ .+.+.+ .....-+.+|.++++|+.|+++++.+..++. .+.++++|+.+.
T Consensus 260 n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 260 N-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp T-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred c-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 6 3333446678888888 888877 4444455777888888888888777776655 444566776664
No 123
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.30 E-value=4.8e-12 Score=135.67 Aligned_cols=100 Identities=16% Similarity=0.133 Sum_probs=60.8
Q ss_pred CCCccEEecCCCcccCCCcc-cccCCCCcEEEcCCCCCCCCCCccccCCCCCCCCccC-eecCCCCCCCCCccccccCCC
Q 044302 439 VESLEELDISGTATRRPPCS-IFHMKNLKTLSFSGCNGPPSTASSLMLPSLSGLCSLT-KLDLSDCGLGEGAILSDIGNL 516 (830)
Q Consensus 439 l~~L~~L~L~~n~i~~l~~~-l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~l~~L~-~L~Ls~~~l~~~~~~~~l~~l 516 (830)
+++|+.|+|++|.+..++.. +.++++|+.|++.++ .. ...-..|.++++|+ .+++.+ .+. ..-+..|.++
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~-----~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c 296 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LK-----TIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGC 296 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CC-----EECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTC
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cc-----eehHHHhhCChhccEEEEEcc-cce-EEchhhhhCC
Confidence 45556666665555555443 334556666666554 11 11122366666776 777766 443 3344667788
Q ss_pred CCCCEEeCCCCCCcccCc-ccCCCCccCEee
Q 044302 517 HSLKALYLSENNFVTLPA-SISGLFNLEYLK 546 (830)
Q Consensus 517 ~~L~~L~L~~n~l~~lp~-~l~~L~~L~~L~ 546 (830)
++|+.|++++|.+..++. .+.++++|+.|+
T Consensus 297 ~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 297 DNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred ccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 888888888888887775 567777777765
No 124
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.30 E-value=6.9e-13 Score=157.09 Aligned_cols=137 Identities=20% Similarity=0.203 Sum_probs=77.2
Q ss_pred CCCCCCceeEEeeeCCcccccccccccCCCCccEEecCCCCCCccCCcccc-cCcccEEeccCcccccccCCCCCccccc
Q 044302 223 NFIEVPNLEVLDLEGCTRLREIHSSLVRHNKLILLNLKGCTSLTTLPGEIF-MKSLKTLVLSGCLKLRKFPHVGGSMECL 301 (830)
Q Consensus 223 ~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~c~~l~~lp~~~~-l~~L~~L~L~~~~~~~~~~~~~~~l~~L 301 (830)
.+..+++|+.|+|++|. +..+|..+..+++|++|+|++ +.++.+|..+. +++|++|+|++|.+. .+|..++.+++|
T Consensus 219 ~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~-N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L 295 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNG-NSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQL 295 (727)
T ss_dssp ---CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTT-SCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTC
T ss_pred hhccCCCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeC-CcCcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCC
Confidence 35555666666666543 335555555666666666666 34445665554 666666666666554 456666666666
Q ss_pred eEeecccccccccccchhcccCCcEEeccCCCCCCCCccccccCcc-CcEEeecCCCCCCcC
Q 044302 302 QELFLDETDIKEMPLSIEHLSGLILLTLKYCKNLSSLPVTISSLKC-LRTLKLSGCSKLKKF 362 (830)
Q Consensus 302 ~~L~L~~~~i~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~-L~~L~L~~~~~~~~~ 362 (830)
+.|+|++|.++.+|..++.+++|+.|+|++|.....+|..+..+.. +..|++++|.....+
T Consensus 296 ~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~ 357 (727)
T 4b8c_D 296 KYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPL 357 (727)
T ss_dssp SEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_pred CEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcC
Confidence 6666666666666666666666666666666666555555443321 122445555544433
No 125
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.29 E-value=8.9e-13 Score=156.18 Aligned_cols=153 Identities=17% Similarity=0.109 Sum_probs=99.5
Q ss_pred ccCCCCCccccceEeecccccccccccchhcccCCcEEeccCCCCCCCCccccccCccCcEEeecCCCCCCcCCc-ccCC
Q 044302 290 KFPHVGGSMECLQELFLDETDIKEMPLSIEHLSGLILLTLKYCKNLSSLPVTISSLKCLRTLKLSGCSKLKKFPQ-IVGM 368 (830)
Q Consensus 290 ~~~~~~~~l~~L~~L~L~~~~i~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~-~~~l 368 (830)
..+..+..++.|+.|+|++|.+..+|..+..+++|++|+|++|... .+|..+..+++|+.|+|++|... .+|. +..+
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 292 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC 292 (727)
T ss_dssp -------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence 4456667777788888888888777777777888888888887666 67777777888888888877766 3443 6667
Q ss_pred CCCcEEEecCCcccccCcccCCCCCccEEecCCccCcccccccccCCCC-CCEEeccCCCCCCccCcccCCCCCccEEec
Q 044302 369 EGLSELYLDGTSITEVPSSIELLPGIELLNLNDCKNLVRLPRSINGLKA-LKTLSLSGCCKLENVPDTLGQVESLEELDI 447 (830)
Q Consensus 369 ~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~-L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L 447 (830)
++|+.|+|++|.++.+|..+..+++|+.|+|++|.+...+|..+..+.. +..|++++|.....+|. .|+.|++
T Consensus 293 ~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l 366 (727)
T 4b8c_D 293 FQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEI 366 (727)
T ss_dssp TTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C------
T ss_pred CCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEe
Confidence 7888888888888888888888888888888888877777766544321 12356777766655553 3455555
Q ss_pred CCC
Q 044302 448 SGT 450 (830)
Q Consensus 448 ~~n 450 (830)
+.|
T Consensus 367 ~~n 369 (727)
T 4b8c_D 367 NTD 369 (727)
T ss_dssp ---
T ss_pred ecc
Confidence 555
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.28 E-value=2.4e-11 Score=119.14 Aligned_cols=80 Identities=19% Similarity=0.187 Sum_probs=43.8
Q ss_pred cEEEecCCcccccCcccCCCCCccEEecCCccCcccccc-cccCCCCCCEEeccCCCCCCccCcccCCCCCccEEecCCC
Q 044302 372 SELYLDGTSITEVPSSIELLPGIELLNLNDCKNLVRLPR-SINGLKALKTLSLSGCCKLENVPDTLGQVESLEELDISGT 450 (830)
Q Consensus 372 ~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~l~~-~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~n 450 (830)
+.+++++++++.+|..+. ++|+.|++++|.+....+. .+..+++|++|++++|......|..+..+++|++|+|++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 467777777777776443 2666666666655443332 2455555555555555544444444444444444444444
Q ss_pred ccc
Q 044302 451 ATR 453 (830)
Q Consensus 451 ~i~ 453 (830)
.+.
T Consensus 89 ~l~ 91 (192)
T 1w8a_A 89 KIK 91 (192)
T ss_dssp CCC
T ss_pred cCC
Confidence 443
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.28 E-value=9e-12 Score=122.16 Aligned_cols=121 Identities=15% Similarity=0.172 Sum_probs=66.9
Q ss_pred ceEEEcCcccCCCccccccCcceEEEecCCCCCCCCC--C-CCCCceEEEccCCChhhc-ccCCCCCCcccEEEccCCCC
Q 044302 142 RLLKIGNVQLPKGLEYLSNKLRLLVWHQYPLKSLPSN--L-QLDKIVEFEMCYSRIEEL-WKGIKPLNTLKVMKLSHSEN 217 (830)
Q Consensus 142 r~L~l~~~~l~~~~~~l~~~Lr~L~l~~~~l~~lp~~--~-~l~~L~~L~L~~n~i~~l-~~~~~~l~~L~~L~L~~~~~ 217 (830)
+.++++++.+......++..|++|++++|.++.+|.. + .+++|++|+|++|.|+.+ |..+..+++|++|+|++|..
T Consensus 11 ~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 90 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90 (192)
T ss_dssp TEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCC
T ss_pred CEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcC
Confidence 4555555555444444445566666666666655543 3 555666666666666655 44555666666666666654
Q ss_pred CCCCCC-CCCCCceeEEeeeCCcccccccccccCCCCccEEecCCC
Q 044302 218 LIKTPN-FIEVPNLEVLDLEGCTRLREIHSSLVRHNKLILLNLKGC 262 (830)
Q Consensus 218 ~~~~~~-~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~c 262 (830)
....+. |..+++|++|++++|......|..+..+++|++|++++|
T Consensus 91 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 91 KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp CEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred CccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 333332 555666666666655444444555555555666655553
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.27 E-value=9.4e-12 Score=116.55 Aligned_cols=125 Identities=19% Similarity=0.141 Sum_probs=66.3
Q ss_pred ccCcEEeecCCCCC-CcCCc-ccCCCCCcEEEecCCcccccCcccCCCCCccEEecCCccCcccccccccCCCCCCEEec
Q 044302 346 KCLRTLKLSGCSKL-KKFPQ-IVGMEGLSELYLDGTSITEVPSSIELLPGIELLNLNDCKNLVRLPRSINGLKALKTLSL 423 (830)
Q Consensus 346 ~~L~~L~L~~~~~~-~~~~~-~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~L 423 (830)
++|+.|++++|... ..+|. +..+++|+.|++++|.++.+ ..+..+++|+.|++++|.....+|..+..+++|++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 34444444444433 23332 23445555555555555554 44555566666666666555545555555666666666
Q ss_pred cCCCCCCc-cCcccCCCCCccEEecCCCcccCCCc----ccccCCCCcEEEcC
Q 044302 424 SGCCKLEN-VPDTLGQVESLEELDISGTATRRPPC----SIFHMKNLKTLSFS 471 (830)
Q Consensus 424 ~~~~~l~~-~~~~l~~l~~L~~L~L~~n~i~~l~~----~l~~l~~L~~L~L~ 471 (830)
++|..... .+..++.+++|++|++++|.+..++. .+..+++|+.|+++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 66554432 22455556666666666666655544 34455555555543
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.24 E-value=3.9e-11 Score=117.61 Aligned_cols=122 Identities=18% Similarity=0.214 Sum_probs=80.7
Q ss_pred ceEEEecCCCCCCCCCCCCCCceEEEccCCChhhcccCCCCCCcccEEEccCCCCCCCCC-CCCCCCceeEEeeeCCccc
Q 044302 163 RLLVWHQYPLKSLPSNLQLDKIVEFEMCYSRIEELWKGIKPLNTLKVMKLSHSENLIKTP-NFIEVPNLEVLDLEGCTRL 241 (830)
Q Consensus 163 r~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~L~~~~~l 241 (830)
++++++++.++.+|..+ ..+|++|++++|.|+.+|..+..+++|++|+|++|......+ .|.++++|++|+|++|...
T Consensus 13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~ 91 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91 (193)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEEcCCCCCCcCCCCC-CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC
Confidence 45666777777777654 357777777777777777777777778888887776544433 3777777777777776544
Q ss_pred ccccccccCCCCccEEecCCCCCCccCCcccc--cCcccEEeccCcc
Q 044302 242 REIHSSLVRHNKLILLNLKGCTSLTTLPGEIF--MKSLKTLVLSGCL 286 (830)
Q Consensus 242 ~~~~~~l~~l~~L~~L~L~~c~~l~~lp~~~~--l~~L~~L~L~~~~ 286 (830)
...+..+..+++|++|+|++ +.++.+|...+ +++|+.|++++|+
T Consensus 92 ~i~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 92 CIPPRTFDGLKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp BCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred EeCHHHhCCCCCCCEEECCC-CCCCeeChhhhhcCccccEEEeCCCC
Confidence 44445677777777777777 45555555432 5556666555554
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.22 E-value=2e-11 Score=117.84 Aligned_cols=128 Identities=17% Similarity=0.176 Sum_probs=61.0
Q ss_pred cCccCcEEeecCCCCCCcCCcccCCC-CCcEEEecCCcccccCcccCCCCCccEEecCCccCcccccccccCCCCCCEEe
Q 044302 344 SLKCLRTLKLSGCSKLKKFPQIVGME-GLSELYLDGTSITEVPSSIELLPGIELLNLNDCKNLVRLPRSINGLKALKTLS 422 (830)
Q Consensus 344 ~l~~L~~L~L~~~~~~~~~~~~~~l~-~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~ 422 (830)
.+++|+.|++++|... .++.+..+. +|+.|++++|.++.+ ..+..+++|+.|++++|......+..+..+++|++|+
T Consensus 17 ~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp CTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred CcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 3444455555544333 223333322 555555555555554 3445555555555555544433223334555555555
Q ss_pred ccCCCCCCccCc--ccCCCCCccEEecCCCcccCCCcc----cccCCCCcEEEcCCCC
Q 044302 423 LSGCCKLENVPD--TLGQVESLEELDISGTATRRPPCS----IFHMKNLKTLSFSGCN 474 (830)
Q Consensus 423 L~~~~~l~~~~~--~l~~l~~L~~L~L~~n~i~~l~~~----l~~l~~L~~L~L~~~~ 474 (830)
+++|.. ..+|. .+..+++|+.|++++|.+..+|.. +..+++|+.|++++|.
T Consensus 95 L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 95 LTNNSL-VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCCCcC-CcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 555543 22333 444555555555555555554443 4444555555444443
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.22 E-value=9.3e-11 Score=114.88 Aligned_cols=123 Identities=19% Similarity=0.212 Sum_probs=55.7
Q ss_pred EEecCCcccccCcccCCCCCccEEecCCccCcccccccccCCCCCCEEeccCCCCCCccCcccCCCCCccEEecCCCccc
Q 044302 374 LYLDGTSITEVPSSIELLPGIELLNLNDCKNLVRLPRSINGLKALKTLSLSGCCKLENVPDTLGQVESLEELDISGTATR 453 (830)
Q Consensus 374 L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~n~i~ 453 (830)
++++++.++.+|..+ .++|+.|++++|.+. .+|..+..+++|+.|++++|.+....+..|..+++|++|+|++|.+.
T Consensus 15 l~~~~~~l~~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~ 91 (193)
T 2wfh_A 15 VRCSNKGLKVLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91 (193)
T ss_dssp EECTTSCCSSCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EEcCCCCCCcCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC
Confidence 344444444444322 134444444444332 33344444444444444444444444444444555555555555554
Q ss_pred CCCc-ccccCCCCcEEEcCCCCCCCCCCccccCCCCCCCCccCeecCCCCCC
Q 044302 454 RPPC-SIFHMKNLKTLSFSGCNGPPSTASSLMLPSLSGLCSLTKLDLSDCGL 504 (830)
Q Consensus 454 ~l~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l 504 (830)
.++. .+..+++|++|+|++|.+... ....+..+++|+.|++++|.+
T Consensus 92 ~i~~~~f~~l~~L~~L~L~~N~l~~~-----~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 92 CIPPRTFDGLKSLRLLSLHGNDISVV-----PEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp BCCTTTTTTCTTCCEEECCSSCCCBC-----CTTTTTTCTTCCEEECCSSCE
T ss_pred EeCHHHhCCCCCCCEEECCCCCCCee-----ChhhhhcCccccEEEeCCCCe
Confidence 4432 344455555555555543311 111244555666666666655
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.21 E-value=1.8e-11 Score=118.12 Aligned_cols=135 Identities=17% Similarity=0.099 Sum_probs=70.4
Q ss_pred cccCCCCCcEEEecCCcccccCcccCCCCCccEEecCCccCcccccccccCCCCCCEEeccCCCCCCccCcccCCCCCcc
Q 044302 364 QIVGMEGLSELYLDGTSITEVPSSIELLPGIELLNLNDCKNLVRLPRSINGLKALKTLSLSGCCKLENVPDTLGQVESLE 443 (830)
Q Consensus 364 ~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~ 443 (830)
.+..+.+|+.|++++|.++.++......++|+.|++++|..... ..+..+++ |+
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~------------------------L~ 67 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRR------------------------LK 67 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSS------------------------CC
T ss_pred hcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCC------------------------CC
Confidence 34455667777777777666654333333666666666554332 33444444 44
Q ss_pred EEecCCCcccCCCccc-ccCCCCcEEEcCCCCCCCCCCccccCCCCCCCCccCeecCCCCCCCCCccccc----cCCCCC
Q 044302 444 ELDISGTATRRPPCSI-FHMKNLKTLSFSGCNGPPSTASSLMLPSLSGLCSLTKLDLSDCGLGEGAILSD----IGNLHS 518 (830)
Q Consensus 444 ~L~L~~n~i~~l~~~l-~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~----l~~l~~ 518 (830)
+|++++|.+..+|..+ ..+++|++|++++|.+.... .+..+..+++|+.|++++|.+.. ++.. +..+++
T Consensus 68 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~----~~~~l~~l~~L~~L~l~~N~i~~--~~~~~~~~~~~l~~ 141 (176)
T 1a9n_A 68 TLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELG----DLDPLASLKSLTYLCILRNPVTN--KKHYRLYVIYKVPQ 141 (176)
T ss_dssp EEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGG----GGGGGGGCTTCCEEECCSSGGGG--STTHHHHHHHHCTT
T ss_pred EEECCCCcccccCcchhhcCCCCCEEECCCCcCCcch----hhHhhhcCCCCCEEEecCCCCCC--cHhHHHHHHHHCCc
Confidence 5555555444444333 44555555555555432100 01124455556666666665542 3332 666777
Q ss_pred CCEEeCCCCCCc
Q 044302 519 LKALYLSENNFV 530 (830)
Q Consensus 519 L~~L~L~~n~l~ 530 (830)
|+.|++++|.+.
T Consensus 142 L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 142 VRVLDFQKVKLK 153 (176)
T ss_dssp CSEETTEECCHH
T ss_pred cceeCCCcCCHH
Confidence 777777776654
No 133
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.19 E-value=3.1e-12 Score=146.82 Aligned_cols=83 Identities=12% Similarity=0.053 Sum_probs=70.0
Q ss_pred CCcceecccccchhhhhhhh-----------hhcccCCCCChHHHHHHhhhc--CCCccc-----------hhhhhccCc
Q 044302 1 MSILQISFDGLQDSEKKIFL-----------DVACFFKQKNRDYVTKILEGY--GFFPVI-----------GIEVLIERS 56 (830)
Q Consensus 1 ~~iL~lSYd~L~~~~K~cFl-----------~~a~fp~~~~~~~l~~~w~a~--g~~~~~-----------~~~~L~~~~ 56 (830)
+++|++||++||+++|.||+ |||+||+|++++ +++|+|+ ||+... ++++|++||
T Consensus 364 ~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L~~rs 441 (549)
T 2a5y_B 364 ECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLKRLSKRG 441 (549)
T ss_dssp CCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHHHTTTBS
T ss_pred HHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHHHHHHHHHcC
Confidence 36899999999999999999 999999999888 8999999 888432 588999999
Q ss_pred ceEEeCC---CceehhHHHHHHHHHHHhhhcc
Q 044302 57 LLTVDDC---NTLGMHDLLQELGQLIVTRQSL 85 (830)
Q Consensus 57 li~~~~~---~~v~mHDll~d~a~~i~~~e~~ 85 (830)
||+.... ++++|||+|||+|++++.+++.
T Consensus 442 Ll~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 442 ALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp SCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred CeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence 9997642 4689999999999999988764
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.18 E-value=2.3e-10 Score=110.52 Aligned_cols=40 Identities=28% Similarity=0.361 Sum_probs=24.9
Q ss_pred ccCCCCCCCEEeCCCCCCcccCccc-CCCCccCEeeccccc
Q 044302 512 DIGNLHSLKALYLSENNFVTLPASI-SGLFNLEYLKLEDCK 551 (830)
Q Consensus 512 ~l~~l~~L~~L~L~~n~l~~lp~~l-~~L~~L~~L~L~~c~ 551 (830)
.+..+++|+.|++++|.++.+|..+ ..+++|++|++++|+
T Consensus 95 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 95 VFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred HhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 3455666666666666666665543 556667777777664
No 135
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.15 E-value=1.7e-09 Score=118.49 Aligned_cols=216 Identities=11% Similarity=0.133 Sum_probs=96.4
Q ss_pred ceeEEeeeCCccccccc-ccccCCCCccEEecCCCCCCccCCcccc-cCcccEEeccCcccccccCCCCCccccceEeec
Q 044302 229 NLEVLDLEGCTRLREIH-SSLVRHNKLILLNLKGCTSLTTLPGEIF-MKSLKTLVLSGCLKLRKFPHVGGSMECLQELFL 306 (830)
Q Consensus 229 ~L~~L~L~~~~~l~~~~-~~l~~l~~L~~L~L~~c~~l~~lp~~~~-l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L 306 (830)
+|+.+.+.. .+..+. .+|.++.+|+.+++.. +.++.++...+ ..+|+.+.+..+ ....-...|.++++|+.+.+
T Consensus 158 ~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~-n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 158 TVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSK-TKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp CCCEEECCT--TCCEECSSTTTTCTTCCEEECTT-SCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEEC
T ss_pred CceEEEeCC--CccEehHHHhhCcccCCeeecCC-CcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEec
Confidence 355555443 222222 3344555555555544 34444544444 445555555432 22233344555555555555
Q ss_pred cccccccccc-chhcccCCcEEeccCCCCCCCCccccccCccCcEEeecCCCCCCcCCcccCCCCCcEEEecCCcccccC
Q 044302 307 DETDIKEMPL-SIEHLSGLILLTLKYCKNLSSLPVTISSLKCLRTLKLSGCSKLKKFPQIVGMEGLSELYLDGTSITEVP 385 (830)
Q Consensus 307 ~~~~i~~l~~-~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~ 385 (830)
..+ ++.++. +|.+ .+|+.+.+.+ .....-...|..+++|+.+.+.++.... +.+..++
T Consensus 234 ~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~------------------~~~~~I~ 292 (401)
T 4fdw_A 234 PEN-VSTIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFND------------------DPEAMIH 292 (401)
T ss_dssp CTT-CCEECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCC------------------CTTCEEC
T ss_pred CCC-ccCcccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccC------------------CcccEEC
Confidence 442 333333 2222 4455554422 1111122344444555555444432210 0001222
Q ss_pred -cccCCCCCccEEecCCccCcccccccccCCCCCCEEeccCCCCCCccCcccCCCCCccEEecCCCcccCCCcc-cccC-
Q 044302 386 -SSIELLPGIELLNLNDCKNLVRLPRSINGLKALKTLSLSGCCKLENVPDTLGQVESLEELDISGTATRRPPCS-IFHM- 462 (830)
Q Consensus 386 -~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~n~i~~l~~~-l~~l- 462 (830)
..+..+++|+.+.|.++ ....-...|.++++|+.+.|..+ ....-..+|.++ +|+.+++.+|....++.. +..+
T Consensus 293 ~~aF~~c~~L~~l~l~~~-i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~ 369 (401)
T 4fdw_A 293 PYCLEGCPKLARFEIPES-IRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFP 369 (401)
T ss_dssp TTTTTTCTTCCEECCCTT-CCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSC
T ss_pred HHHhhCCccCCeEEeCCc-eEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCC
Confidence 23455555555555532 22222345556666666666432 223334456666 666666666665544432 3334
Q ss_pred CCCcEEEcCC
Q 044302 463 KNLKTLSFSG 472 (830)
Q Consensus 463 ~~L~~L~L~~ 472 (830)
.+++.|.+..
T Consensus 370 ~~l~~l~vp~ 379 (401)
T 4fdw_A 370 DDITVIRVPA 379 (401)
T ss_dssp TTCCEEEECG
T ss_pred CCccEEEeCH
Confidence 3566666654
No 136
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.14 E-value=2.5e-09 Score=117.46 Aligned_cols=308 Identities=14% Similarity=0.125 Sum_probs=138.8
Q ss_pred CCCCCCC-C-CCCCceEEEccCCChhhccc-CCCCCCcccEEEccCCCCCCCCCCCCCCCceeEEeeeCCccccccc-cc
Q 044302 172 LKSLPSN-L-QLDKIVEFEMCYSRIEELWK-GIKPLNTLKVMKLSHSENLIKTPNFIEVPNLEVLDLEGCTRLREIH-SS 247 (830)
Q Consensus 172 l~~lp~~-~-~l~~L~~L~L~~n~i~~l~~-~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~-~~ 247 (830)
++++... | .+.+|+.+.+.. .++.++. .|..+.+|+.+++..+-.......|.++++|+.+.+.. .+..+. .+
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~c~~L~~i~~p~--~l~~i~~~a 135 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDSVKMIGRCTFSGCYALKSILLPL--MLKSIGVEA 135 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCTTCCCCCCCT--TCCEECTTT
T ss_pred EeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCCceEccchhhcccccchhhcccC--ceeeeccee
Confidence 3444433 3 556677777653 3565543 46666677777665542222233466666666655543 122221 22
Q ss_pred ccCCCCccEEecCCCCCCccCCcccc--cCcccEEeccCcccccccCCCCCccccceEeecccccccccccchhcccCCc
Q 044302 248 LVRHNKLILLNLKGCTSLTTLPGEIF--MKSLKTLVLSGCLKLRKFPHVGGSMECLQELFLDETDIKEMPLSIEHLSGLI 325 (830)
Q Consensus 248 l~~l~~L~~L~L~~c~~l~~lp~~~~--l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~l~~l~~L~ 325 (830)
+.++..+..... .....+....+ +.+|+.+.+..+ ........+..+.+|+.+.+..+ ++.++
T Consensus 136 F~~~~~~~~~~~---~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~---------- 200 (394)
T 4fs7_A 136 FKGCDFKEITIP---EGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIR---------- 200 (394)
T ss_dssp TTTCCCSEEECC---TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEEC----------
T ss_pred eecccccccccC---ccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeC----------
Confidence 333322221111 11222222222 444555544432 11222233444444444444332 22222
Q ss_pred EEeccCCCCCCCCccccccCccCcEEeecCCCCCCcCCcccCCCCCcEEEecCCcccccC-cccCCCCCccEEecCCccC
Q 044302 326 LLTLKYCKNLSSLPVTISSLKCLRTLKLSGCSKLKKFPQIVGMEGLSELYLDGTSITEVP-SSIELLPGIELLNLNDCKN 404 (830)
Q Consensus 326 ~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~-~~~~~l~~L~~L~L~~~~~ 404 (830)
...+..+..|+.+.+..+...- -.......+|+.+.+... ++.+. ..+..+..|+.+.+..+.
T Consensus 201 -------------~~~F~~~~~L~~i~~~~~~~~i-~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~- 264 (394)
T 4fs7_A 201 -------------DYCFAECILLENMEFPNSLYYL-GDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNK- 264 (394)
T ss_dssp -------------TTTTTTCTTCCBCCCCTTCCEE-CTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTT-
T ss_pred -------------chhhccccccceeecCCCceEe-ehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCc-
Confidence 2234444444444443321110 011122345555555432 22332 235566667777665432
Q ss_pred cccccccccCCCCCCEEeccCCCCCCccCcccCCCCCccEEecCCCcccCCCc-ccccCCCCcEEEcCCCCCCCCCCccc
Q 044302 405 LVRLPRSINGLKALKTLSLSGCCKLENVPDTLGQVESLEELDISGTATRRPPC-SIFHMKNLKTLSFSGCNGPPSTASSL 483 (830)
Q Consensus 405 l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~n~i~~l~~-~l~~l~~L~~L~L~~~~~~~~~~~~~ 483 (830)
.......+..+..++.+...... .....+..+.+|+.+.+..+ +..++. .+.++++|+.++|..
T Consensus 265 ~~i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~----------- 329 (394)
T 4fs7_A 265 LRIGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY----------- 329 (394)
T ss_dssp CEECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-----------
T ss_pred ceeeccccccccccceeccCcee---eccccccccccccccccccc-cceechhhhcCCCCCCEEEeCC-----------
Confidence 22333456666777776665432 22245666777777777643 333322 233445555554432
Q ss_pred cCCCCCCCCccCeecCCCCCCCCCccccccCCCCCCCEEeCCCCCCcccCc-ccCCCCccCEeeccc
Q 044302 484 MLPSLSGLCSLTKLDLSDCGLGEGAILSDIGNLHSLKALYLSENNFVTLPA-SISGLFNLEYLKLED 549 (830)
Q Consensus 484 ~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~-~l~~L~~L~~L~L~~ 549 (830)
+ +. ..-...|.++++|+.+.+..+ +..|+. .+.++++|+.++|..
T Consensus 330 ------------------~-v~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 330 ------------------L-VE-EIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp ------------------T-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred ------------------c-cc-EEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence 1 11 112334555666666666544 555543 456666666666643
No 137
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.14 E-value=2.3e-09 Score=117.42 Aligned_cols=221 Identities=10% Similarity=0.074 Sum_probs=108.0
Q ss_pred cccEEeccCcccccccCCCCCccccceEeecccccccccccchhcccCCcEEeccCCCCCCCCccccccCccCcEEeecC
Q 044302 276 SLKTLVLSGCLKLRKFPHVGGSMECLQELFLDETDIKEMPLSIEHLSGLILLTLKYCKNLSSLPVTISSLKCLRTLKLSG 355 (830)
Q Consensus 276 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~ 355 (830)
+|+.+.+.. .....-...|.++.+|+.+.+..|.++.++.......+|+.+.+..+ ....-...|..+++|+.+.+..
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC
Confidence 455555543 23333345566667777777777777766664444566777776532 2222334566667777776665
Q ss_pred CCCCCcCCc--ccCCCCCcEEEecCCcccccC-cccCCCCCccEEecCCccCcccccccccCCCCCCEEeccCCCCCCcc
Q 044302 356 CSKLKKFPQ--IVGMEGLSELYLDGTSITEVP-SSIELLPGIELLNLNDCKNLVRLPRSINGLKALKTLSLSGCCKLENV 432 (830)
Q Consensus 356 ~~~~~~~~~--~~~l~~L~~L~L~~~~i~~l~-~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~ 432 (830)
+ +..++. +.+ .+|+.+.+ .+.++.++ ..+..+++|+.+.+.++.... +......
T Consensus 236 ~--l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~-------------------~~~~~I~ 292 (401)
T 4fdw_A 236 N--VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFND-------------------DPEAMIH 292 (401)
T ss_dssp T--CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCC-------------------CTTCEEC
T ss_pred C--ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccC-------------------CcccEEC
Confidence 3 222221 222 45555555 23344443 234555555555554433220 0000122
Q ss_pred CcccCCCCCccEEecCCCcccCCCc-ccccCCCCcEEEcCCCCCCCCCCccccCCCCCCCCccCeecCCCCCCCCCcccc
Q 044302 433 PDTLGQVESLEELDISGTATRRPPC-SIFHMKNLKTLSFSGCNGPPSTASSLMLPSLSGLCSLTKLDLSDCGLGEGAILS 511 (830)
Q Consensus 433 ~~~l~~l~~L~~L~L~~n~i~~l~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~ 511 (830)
+..|.++++|+.+.+.+ .+..++. .+.++++|+.+.|..+- .......|.++ +|+.+++.+|.+. .....
T Consensus 293 ~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~l------~~I~~~aF~~~-~L~~l~l~~n~~~-~l~~~ 363 (401)
T 4fdw_A 293 PYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPANV------TQINFSAFNNT-GIKEVKVEGTTPP-QVFEK 363 (401)
T ss_dssp TTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTTC------CEECTTSSSSS-CCCEEEECCSSCC-BCCCS
T ss_pred HHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECccc------cEEcHHhCCCC-CCCEEEEcCCCCc-ccccc
Confidence 33444555555555542 2333322 23345555555554321 11112235566 6666666666554 23344
Q ss_pred ccCCCC-CCCEEeCCCCCCc
Q 044302 512 DIGNLH-SLKALYLSENNFV 530 (830)
Q Consensus 512 ~l~~l~-~L~~L~L~~n~l~ 530 (830)
.|.+++ +++.|.+..+.+.
T Consensus 364 ~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 364 VWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp SCCCSCTTCCEEEECGGGHH
T ss_pred cccCCCCCccEEEeCHHHHH
Confidence 455563 6677777665433
No 138
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.07 E-value=1.4e-09 Score=104.95 Aligned_cols=127 Identities=20% Similarity=0.148 Sum_probs=78.0
Q ss_pred cEEEecCCcccccCcccCCCCCccEEecCCccCcccccccccCCCCCCEEeccCCCCCCccCcccCCCCCccEEecCCCc
Q 044302 372 SELYLDGTSITEVPSSIELLPGIELLNLNDCKNLVRLPRSINGLKALKTLSLSGCCKLENVPDTLGQVESLEELDISGTA 451 (830)
Q Consensus 372 ~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~n~ 451 (830)
+.+++++++++.+|..+ .++|+.|++++|......+..+..+++|++|++++|......+..+..+++|++|++++|.
T Consensus 10 ~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 35555556666655433 3566666666666554444455666677777777666555555556667777777777777
Q ss_pred ccCCCcc-cccCCCCcEEEcCCCCCCCCCCccccCCCCCCCCccCeecCCCCCCC
Q 044302 452 TRRPPCS-IFHMKNLKTLSFSGCNGPPSTASSLMLPSLSGLCSLTKLDLSDCGLG 505 (830)
Q Consensus 452 i~~l~~~-l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~ 505 (830)
++.++.. +..+++|++|++++|.+... ....+..+++|++|++++|.+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~-----~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLKSV-----PDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCC-----CTTTTTTCTTCCEEECCSSCBC
T ss_pred ccccCHHHhhCCcccCEEECcCCcceEe-----CHHHhcCCcccCEEEecCCCee
Confidence 7766554 45677777777777764421 1112566777777777777765
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.07 E-value=5.7e-13 Score=131.53 Aligned_cols=62 Identities=23% Similarity=0.185 Sum_probs=31.4
Q ss_pred cccCCCCCCEEeccCCCCCCccCcccCCCCCccEEecCCCcccCCCcccccCCCCcEEEcCCCC
Q 044302 411 SINGLKALKTLSLSGCCKLENVPDTLGQVESLEELDISGTATRRPPCSIFHMKNLKTLSFSGCN 474 (830)
Q Consensus 411 ~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~n~i~~l~~~l~~l~~L~~L~L~~~~ 474 (830)
.+..+++|++|++++|.... +| .+..+++|+.|++++|.+..+|..+..+++|++|++++|+
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~ 104 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ 104 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc
Confidence 44455555555555544333 33 4455555555555555555555444444555555555544
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.02 E-value=4.7e-12 Score=124.95 Aligned_cols=110 Identities=18% Similarity=0.163 Sum_probs=49.3
Q ss_pred CCccccceEeecccccccccccchhcccCCcEEeccCCCCCCCCccccccCccCcEEeecCCCCCCcCCcccCCCCCcEE
Q 044302 295 GGSMECLQELFLDETDIKEMPLSIEHLSGLILLTLKYCKNLSSLPVTISSLKCLRTLKLSGCSKLKKFPQIVGMEGLSEL 374 (830)
Q Consensus 295 ~~~l~~L~~L~L~~~~i~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L 374 (830)
++.+++|+.|++++|.+..+| .+..+++|+.|++++|... .+|..+..+++|+.|++++|.... +|.+..+++|+.|
T Consensus 44 ~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~~~~~l~~L~~L 120 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LSGIEKLVNLRVL 120 (198)
T ss_dssp HHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HHHHHHHHHSSEE
T ss_pred HhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CCccccCCCCCEE
Confidence 334444444444444444444 4444444444444444332 233333334444444444443222 2333334445555
Q ss_pred EecCCcccccCc--ccCCCCCccEEecCCccCccc
Q 044302 375 YLDGTSITEVPS--SIELLPGIELLNLNDCKNLVR 407 (830)
Q Consensus 375 ~L~~~~i~~l~~--~~~~l~~L~~L~L~~~~~l~~ 407 (830)
++++|.++.++. .+..+++|+.|++++|+....
T Consensus 121 ~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp EESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred ECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 555555554433 345555555555555554433
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.99 E-value=2.3e-09 Score=102.59 Aligned_cols=103 Identities=21% Similarity=0.201 Sum_probs=78.1
Q ss_pred ccEEecCCCcccCCCcccccCCCCcEEEcCCCCCCCCCCccccCCCCCCCCccCeecCCCCCCCCCccccccCCCCCCCE
Q 044302 442 LEELDISGTATRRPPCSIFHMKNLKTLSFSGCNGPPSTASSLMLPSLSGLCSLTKLDLSDCGLGEGAILSDIGNLHSLKA 521 (830)
Q Consensus 442 L~~L~L~~n~i~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~ 521 (830)
.+.++++++.+..+|..+. ++|++|+|++|.+... ....+.++++|++|+|++|++. ...+..+..+++|+.
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~-----~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~ 82 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKL-----EPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQ 82 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCC-----CTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCcc-----ChhhhcCcccCCEEECCCCCcC-ccChhhccCCCCCCE
Confidence 4567777777777776553 7777888877775532 1223778888888888888886 444556788999999
Q ss_pred EeCCCCCCcccCcc-cCCCCccCEeecccccc
Q 044302 522 LYLSENNFVTLPAS-ISGLFNLEYLKLEDCKR 552 (830)
Q Consensus 522 L~L~~n~l~~lp~~-l~~L~~L~~L~L~~c~~ 552 (830)
|+|++|+++.+|.. +..+++|++|+|++|+.
T Consensus 83 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 83 LSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred EECCCCccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 99999999988864 78899999999999863
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.97 E-value=3.2e-09 Score=101.90 Aligned_cols=101 Identities=16% Similarity=0.155 Sum_probs=74.6
Q ss_pred cEEecCCCcccCCCcccccCCCCcEEEcCCCCCCCCCCccccCCCCCCCCccCeecCCCCCCCCCccccccCCCCCCCEE
Q 044302 443 EELDISGTATRRPPCSIFHMKNLKTLSFSGCNGPPSTASSLMLPSLSGLCSLTKLDLSDCGLGEGAILSDIGNLHSLKAL 522 (830)
Q Consensus 443 ~~L~L~~n~i~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L 522 (830)
+.++++++.+..+|..+. ++|++|+|++|.+... ....+.++++|+.|+|++|++. ...+..+..+++|+.|
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~-----~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L 86 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKL-----EPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQL 86 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCC-----CTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCcccc-----CHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchhhEE
Confidence 466777777777776554 6777777777765432 1223677888888888888886 3333446888999999
Q ss_pred eCCCCCCcccCcc-cCCCCccCEeeccccc
Q 044302 523 YLSENNFVTLPAS-ISGLFNLEYLKLEDCK 551 (830)
Q Consensus 523 ~L~~n~l~~lp~~-l~~L~~L~~L~L~~c~ 551 (830)
+|++|++..+|.. +..+++|++|+|++|+
T Consensus 87 ~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 87 DLNDNHLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred ECCCCccceeCHHHhccccCCCEEEeCCCC
Confidence 9999999988875 7889999999999986
No 143
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.96 E-value=2.6e-08 Score=109.36 Aligned_cols=324 Identities=12% Similarity=0.119 Sum_probs=194.8
Q ss_pred ccccChHhhhCCCCCceEEEcCc--ccCC-CccccccCcceEEEecCCCCCCCCCC--CCCCceEEEccCCChhhccc-C
Q 044302 127 EMHLSAKAFSLMTNLRLLKIGNV--QLPK-GLEYLSNKLRLLVWHQYPLKSLPSNL--QLDKIVEFEMCYSRIEELWK-G 200 (830)
Q Consensus 127 ~~~~~~~~f~~l~~Lr~L~l~~~--~l~~-~~~~l~~~Lr~L~l~~~~l~~lp~~~--~l~~L~~L~L~~n~i~~l~~-~ 200 (830)
...+...||.++.+|+.+.+..+ .+.. .|... .+|+.+++..+ ++.++... .+..|+.+.+..+ ++.+.. .
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~i~~I~~~aF~~c-~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a 135 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPSTVREIGEFAFENC-SKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEA 135 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTTCCEECTTTTTTC-TTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCCccCcchhHhhCC-CCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeeccee
Confidence 34567788888888888888643 2332 34444 37888877543 56665443 6667777666543 444432 3
Q ss_pred CCCCCcccEEEccCCCCCCCCCCCCCCCceeEEeeeCCcccccc-cccccCCCCccEEecCCCCCCccCCcccc--cCcc
Q 044302 201 IKPLNTLKVMKLSHSENLIKTPNFIEVPNLEVLDLEGCTRLREI-HSSLVRHNKLILLNLKGCTSLTTLPGEIF--MKSL 277 (830)
Q Consensus 201 ~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~-~~~l~~l~~L~~L~L~~c~~l~~lp~~~~--l~~L 277 (830)
+.....+... +...........|.++++|+.+.+.++ ...+ ...+.++.+|+.+.+.. .++.++...+ +..|
T Consensus 136 F~~~~~~~~~-~~~~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~--~~~~I~~~~F~~~~~L 210 (394)
T 4fs7_A 136 FKGCDFKEIT-IPEGVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPR--NLKIIRDYCFAECILL 210 (394)
T ss_dssp TTTCCCSEEE-CCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCT--TCCEECTTTTTTCTTC
T ss_pred eecccccccc-cCccccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCC--CceEeCchhhcccccc
Confidence 4444333332 222222233345778888888888652 2333 34566777888777764 3566665555 6677
Q ss_pred cEEeccCcccccccCCCCCccccceEeecccccccccc-cchhcccCCcEEeccCCCCCCCCccccccCccCcEEeecCC
Q 044302 278 KTLVLSGCLKLRKFPHVGGSMECLQELFLDETDIKEMP-LSIEHLSGLILLTLKYCKNLSSLPVTISSLKCLRTLKLSGC 356 (830)
Q Consensus 278 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~-~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~ 356 (830)
+.+.+..+.. .+........+|+.+.+.... ..+. ..+..+..|+.+.+..+. .......+..+..++.+.....
T Consensus 211 ~~i~~~~~~~--~i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~~ 286 (394)
T 4fs7_A 211 ENMEFPNSLY--YLGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNK-LRIGGSLFYNCSGLKKVIYGSV 286 (394)
T ss_dssp CBCCCCTTCC--EECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTT-CEECSCTTTTCTTCCEEEECSS
T ss_pred ceeecCCCce--EeehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCc-ceeeccccccccccceeccCce
Confidence 7776654321 222233344566666665432 2232 355667777777776542 2233345667777777766543
Q ss_pred CCCCcCCcccCCCCCcEEEecCCcccccCc-ccCCCCCccEEecCCccCcccccccccCCCCCCEEeccCCCCCCccCcc
Q 044302 357 SKLKKFPQIVGMEGLSELYLDGTSITEVPS-SIELLPGIELLNLNDCKNLVRLPRSINGLKALKTLSLSGCCKLENVPDT 435 (830)
Q Consensus 357 ~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~ 435 (830)
.. .-..+.++.+|+.+.+..+ ++.++. .+..+++|+.++|.++ ....-..+|.++.+|+.+.+..+ ....-..+
T Consensus 287 ~i--~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~a 361 (394)
T 4fs7_A 287 IV--PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANA 361 (394)
T ss_dssp EE--CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTT
T ss_pred ee--ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHH
Confidence 21 1112456778888888654 666654 4778899999998653 22233467888999999999765 33444567
Q ss_pred cCCCCCccEEecCCCcccCCCcccccCCCCcEE
Q 044302 436 LGQVESLEELDISGTATRRPPCSIFHMKNLKTL 468 (830)
Q Consensus 436 l~~l~~L~~L~L~~n~i~~l~~~l~~l~~L~~L 468 (830)
|.++++|+.+++..+ +..+...+.++++|+.+
T Consensus 362 F~~C~~L~~i~lp~~-~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 362 FQGCINLKKVELPKR-LEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp BTTCTTCCEEEEEGG-GGGGGGGBCTTCEEEEE
T ss_pred hhCCCCCCEEEECCC-CEEhhheecCCCCCcEE
Confidence 889999999999754 44445567777777765
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.96 E-value=2.7e-09 Score=102.10 Aligned_cols=102 Identities=18% Similarity=0.209 Sum_probs=67.7
Q ss_pred CcEEEecCCcccccCcccCCCCCccEEecCCccCcccccccccCCCCCCEEeccCCCCCCccCcccCCCCCccEEecCCC
Q 044302 371 LSELYLDGTSITEVPSSIELLPGIELLNLNDCKNLVRLPRSINGLKALKTLSLSGCCKLENVPDTLGQVESLEELDISGT 450 (830)
Q Consensus 371 L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~n 450 (830)
.+.++++++.++.+|..+ .++|+.|+|++|.+....|..+.++++|++|++++|.+....+..|..+++|++|+|++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 457777788888777655 367777777777766666666777777777777777666555555666777777777777
Q ss_pred cccCCCcc-cccCCCCcEEEcCCCC
Q 044302 451 ATRRPPCS-IFHMKNLKTLSFSGCN 474 (830)
Q Consensus 451 ~i~~l~~~-l~~l~~L~~L~L~~~~ 474 (830)
.+..++.. +..+++|++|+|++|+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 66665543 4455555555555554
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.96 E-value=3.2e-09 Score=101.97 Aligned_cols=101 Identities=16% Similarity=0.191 Sum_probs=63.6
Q ss_pred cEEEecCCcccccCcccCCCCCccEEecCCccCcccccccccCCCCCCEEeccCCCCCCccCcccCCCCCccEEecCCCc
Q 044302 372 SELYLDGTSITEVPSSIELLPGIELLNLNDCKNLVRLPRSINGLKALKTLSLSGCCKLENVPDTLGQVESLEELDISGTA 451 (830)
Q Consensus 372 ~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~n~ 451 (830)
+.++++++.++.+|..+. ++|+.|+|++|.+....|..+.++++|++|+|++|.+....+..+..+++|+.|+|++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 477777888887777553 677777777776666656666666666666666665554444445666666666666666
Q ss_pred ccCCCcc-cccCCCCcEEEcCCCC
Q 044302 452 TRRPPCS-IFHMKNLKTLSFSGCN 474 (830)
Q Consensus 452 i~~l~~~-l~~l~~L~~L~L~~~~ 474 (830)
+..+|.. +..+++|++|+|++|+
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSC
T ss_pred cceeCHHHhccccCCCEEEeCCCC
Confidence 6655543 4445555555555544
No 146
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.80 E-value=3.9e-07 Score=99.91 Aligned_cols=21 Identities=14% Similarity=0.260 Sum_probs=15.0
Q ss_pred cccChHhhhCCC-CCceEEEcC
Q 044302 128 MHLSAKAFSLMT-NLRLLKIGN 148 (830)
Q Consensus 128 ~~~~~~~f~~l~-~Lr~L~l~~ 148 (830)
..+...+|.+++ .|+.+.+..
T Consensus 52 t~Ig~~aF~~~~~~L~sI~iP~ 73 (394)
T 4gt6_A 52 SKIGDRVFCNYKYVLTSVQIPD 73 (394)
T ss_dssp EEECTTTTTTCCSCCCEEEECT
T ss_pred eEcCHhhccCCCCcCEEEEECC
Confidence 456778888875 588887754
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.66 E-value=7.4e-08 Score=103.74 Aligned_cols=102 Identities=17% Similarity=0.132 Sum_probs=78.3
Q ss_pred EEEecCC-cccccCcccCCCCCccEEecCC-ccCcccccccccCCCCCCEEeccCCCCCCccCcccCCCCCccEEecCCC
Q 044302 373 ELYLDGT-SITEVPSSIELLPGIELLNLND-CKNLVRLPRSINGLKALKTLSLSGCCKLENVPDTLGQVESLEELDISGT 450 (830)
Q Consensus 373 ~L~L~~~-~i~~l~~~~~~l~~L~~L~L~~-~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~n 450 (830)
.++++++ +++.+|. +..+++|+.|+|++ |.+....+..|.++++|+.|+|++|.+....|..|..+++|+.|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 4567776 7888888 88888888888886 6666656677888888888888888777777778888888888888888
Q ss_pred cccCCCcccccCCCCcEEEcCCCCC
Q 044302 451 ATRRPPCSIFHMKNLKTLSFSGCNG 475 (830)
Q Consensus 451 ~i~~l~~~l~~l~~L~~L~L~~~~~ 475 (830)
.+..+|..++....|+.|+|.+|+.
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~~ 115 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNPL 115 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred ccceeCHHHcccCCceEEEeeCCCc
Confidence 8888776655544477777777663
No 148
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=98.63 E-value=5.2e-09 Score=132.85 Aligned_cols=82 Identities=16% Similarity=0.122 Sum_probs=73.4
Q ss_pred CcceecccccchhhhhhhhhhcccCCCC--ChHHHHHHhhhcCCCccchhhhhccCcceEEeCCCc---eehhHHHHHHH
Q 044302 2 SILQISFDGLQDSEKKIFLDVACFFKQK--NRDYVTKILEGYGFFPVIGIEVLIERSLLTVDDCNT---LGMHDLLQELG 76 (830)
Q Consensus 2 ~iL~lSYd~L~~~~K~cFl~~a~fp~~~--~~~~l~~~w~a~g~~~~~~~~~L~~~~li~~~~~~~---v~mHDll~d~a 76 (830)
.+|++||+.||+++|.||+|||+||+++ .++.++.+|.+++..++.++++|+++|||+...+|. ++|||++|++|
T Consensus 366 ~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~ 445 (1249)
T 3sfz_A 366 EAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFL 445 (1249)
T ss_dssp HHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHH
Confidence 3688999999999999999999999986 668999999998877889999999999999876665 89999999999
Q ss_pred HHHHhhh
Q 044302 77 QLIVTRQ 83 (830)
Q Consensus 77 ~~i~~~e 83 (830)
++.+.+|
T Consensus 446 ~~~~~~~ 452 (1249)
T 3sfz_A 446 TEKNRSQ 452 (1249)
T ss_dssp HHHTGGG
T ss_pred HhhhhHH
Confidence 9887654
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.63 E-value=2.3e-06 Score=93.69 Aligned_cols=112 Identities=13% Similarity=0.175 Sum_probs=67.3
Q ss_pred hhhccc-CCCCCC-cccEEEccCCCCCCCCCCCCCCCceeEEeeeCC--ccccccc-ccccCCCCccEEecCCCCCCccC
Q 044302 194 IEELWK-GIKPLN-TLKVMKLSHSENLIKTPNFIEVPNLEVLDLEGC--TRLREIH-SSLVRHNKLILLNLKGCTSLTTL 268 (830)
Q Consensus 194 i~~l~~-~~~~l~-~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~--~~l~~~~-~~l~~l~~L~~L~L~~c~~l~~l 268 (830)
++++.. .|..+. .|+.+.+..+-......+|.++.+|+.+.+..+ ..+..+. .+|..+.+|+.+.+.. .++.+
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~--~~~~I 128 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDTVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILD--SVTEI 128 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTTCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGT--TCSEE
T ss_pred eeEcCHhhccCCCCcCEEEEECCCeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCC--cccee
Confidence 344543 466664 589999977533334456889999999998764 2344443 4466677777766653 45555
Q ss_pred Ccccc--cCcccEEeccCcccccccCCCCCccccceEeeccc
Q 044302 269 PGEIF--MKSLKTLVLSGCLKLRKFPHVGGSMECLQELFLDE 308 (830)
Q Consensus 269 p~~~~--l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~ 308 (830)
+...+ +.+|+.+.+... ........+..+..|+.+.+..
T Consensus 129 ~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~ 169 (394)
T 4gt6_A 129 DSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPD 169 (394)
T ss_dssp CTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCT
T ss_pred hhhhhhhhcccccccccce-eeeecccceecccccccccccc
Confidence 55544 667777776542 2223334555666666666543
No 150
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=98.61 E-value=5.4e-09 Score=122.68 Aligned_cols=75 Identities=19% Similarity=0.200 Sum_probs=64.7
Q ss_pred Ccceecccccchhh-hhhhhhhcccCCCCC--hHHHHHHhhhcCC-CccchhhhhccCcceEEeC-CCceehhHHHHHHH
Q 044302 2 SILQISFDGLQDSE-KKIFLDVACFFKQKN--RDYVTKILEGYGF-FPVIGIEVLIERSLLTVDD-CNTLGMHDLLQELG 76 (830)
Q Consensus 2 ~iL~lSYd~L~~~~-K~cFl~~a~fp~~~~--~~~l~~~w~a~g~-~~~~~~~~L~~~~li~~~~-~~~v~mHDll~d~a 76 (830)
.+|++||+.||+++ |+||+|||+||+++. ++.++.+|+++|. .++.++++|++||||+... .++++||||+++++
T Consensus 357 aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 357 TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 36889999999999 999999999999864 5779999999973 2567889999999999863 56899999999865
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.60 E-value=9.3e-08 Score=102.92 Aligned_cols=63 Identities=25% Similarity=0.196 Sum_probs=36.8
Q ss_pred CCCCCccCeecCCCCCCCCCccccccCCCCCCCEEeCCCCCCcccCcccCCCCccCEeeccccc
Q 044302 488 LSGLCSLTKLDLSDCGLGEGAILSDIGNLHSLKALYLSENNFVTLPASISGLFNLEYLKLEDCK 551 (830)
Q Consensus 488 l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~c~ 551 (830)
|.++++|+.|+|++|.+. +..+..|..+++|+.|+|++|+|..+|..+.....|+.|+|.+|+
T Consensus 52 ~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 52 LRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp SCSCCCCSEEECCSSCCC-EECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred hccccCCCEEECCCCccc-eeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCceEEEeeCCC
Confidence 455555666666666554 344455666666666666666666666544333336666666664
No 152
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.58 E-value=3.1e-09 Score=115.25 Aligned_cols=85 Identities=14% Similarity=0.078 Sum_probs=48.8
Q ss_pred CCCcEEEecCCcccc-----cCcccCCCCCccEEecCCccCcc----cccccccCCCCCCEEeccCCCCCCc----cCcc
Q 044302 369 EGLSELYLDGTSITE-----VPSSIELLPGIELLNLNDCKNLV----RLPRSINGLKALKTLSLSGCCKLEN----VPDT 435 (830)
Q Consensus 369 ~~L~~L~L~~~~i~~-----l~~~~~~l~~L~~L~L~~~~~l~----~l~~~~~~l~~L~~L~L~~~~~l~~----~~~~ 435 (830)
++|+.|+|++|.++. ++..+...++|++|+|++|.+.. .++..+...++|++|+|++|.+... ++..
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~ 234 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA 234 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence 345555555555442 33334555666666666665443 2344455566777777777765432 3334
Q ss_pred cCCCCCccEEecCCCccc
Q 044302 436 LGQVESLEELDISGTATR 453 (830)
Q Consensus 436 l~~l~~L~~L~L~~n~i~ 453 (830)
+...++|++|+|++|.+.
T Consensus 235 L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 235 AREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHCSSCCEEECTTSSCC
T ss_pred HHhCCCCCEEeccCCCCC
Confidence 445677778888877765
No 153
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.55 E-value=5.8e-09 Score=113.06 Aligned_cols=69 Identities=16% Similarity=0.063 Sum_probs=34.2
Q ss_pred CCCCCccEEecCCCcccC-----CCcccccCCCCcEEEcCCCCCCCCCCccccCCCCCCCCccCeecCCCCCCCC
Q 044302 437 GQVESLEELDISGTATRR-----PPCSIFHMKNLKTLSFSGCNGPPSTASSLMLPSLSGLCSLTKLDLSDCGLGE 506 (830)
Q Consensus 437 ~~l~~L~~L~L~~n~i~~-----l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~ 506 (830)
...++|++|+|++|.+.. +...+...++|++|+|++|.+...... .....+...++|++|+|++|.+++
T Consensus 180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~-~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL-ALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH-HHHHHHHHCSSCCEEECTTSSCCH
T ss_pred hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH-HHHHHHHhCCCCCEEeccCCCCCH
Confidence 344555555555555441 233344455666666666654321000 001113345677777777777763
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.54 E-value=1.6e-08 Score=108.59 Aligned_cols=141 Identities=16% Similarity=0.189 Sum_probs=74.7
Q ss_pred ccccccCCCCCCEEeccCCCCCCccCcccCCCCCccEEecCCCcccC-CCcccc--cCCCCcEEEcCCCC---CCCCCCc
Q 044302 408 LPRSINGLKALKTLSLSGCCKLENVPDTLGQVESLEELDISGTATRR-PPCSIF--HMKNLKTLSFSGCN---GPPSTAS 481 (830)
Q Consensus 408 l~~~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~~n~i~~-l~~~l~--~l~~L~~L~L~~~~---~~~~~~~ 481 (830)
+...+..+|+|+.|.|++|.... ++. + .+++|++|++..+.+.. ....+. .+|+|+.|+|+.+. .......
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l~-l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~ 240 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNLS-IGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN 240 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTCB-CCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred HHHHHhcCCCCcEEEEeCCCCce-ecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence 33445556777777776663222 222 2 25677777777666541 111222 56777777774321 1000000
Q ss_pred cc-cCCCCCCCCccCeecCCCCCCCCCccc--cccCCCCCCCEEeCCCCCCcc-----cCcccCCCCccCEeeccccc
Q 044302 482 SL-MLPSLSGLCSLTKLDLSDCGLGEGAIL--SDIGNLHSLKALYLSENNFVT-----LPASISGLFNLEYLKLEDCK 551 (830)
Q Consensus 482 ~~-~l~~l~~l~~L~~L~Ls~~~l~~~~~~--~~l~~l~~L~~L~L~~n~l~~-----lp~~l~~L~~L~~L~L~~c~ 551 (830)
.. ..-....+|+|+.|++++|.+.+.... .....+++|+.|+|+.|.+.. ++..+..+++|+.|+|++|.
T Consensus 241 ~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 00 000113467788888877776531111 111356778888888777763 44455566777777777763
No 155
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.50 E-value=1e-07 Score=102.40 Aligned_cols=82 Identities=20% Similarity=0.203 Sum_probs=39.1
Q ss_pred chhcccCCcEEeccCCCC---------CCCCccccccCccCcEEeecCCCCCCcCCcccCCCCCcEEEecCCccccc-Cc
Q 044302 317 SIEHLSGLILLTLKYCKN---------LSSLPVTISSLKCLRTLKLSGCSKLKKFPQIVGMEGLSELYLDGTSITEV-PS 386 (830)
Q Consensus 317 ~l~~l~~L~~L~L~~~~~---------~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l-~~ 386 (830)
++..+++|+.|.+..... ...+...+..+|+|+.|.+++|... .++.+ .+++|+.|.|..+.+..- ..
T Consensus 134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~~-~~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGKK-PRPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCSC-BCTTCSEEEEECSBCCHHHHH
T ss_pred hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eeccc-cCCCCcEEEEecCCCChHHHH
Confidence 445566666666644321 1123334455666777777665322 12222 255666666665554311 01
Q ss_pred cc--CCCCCccEEecC
Q 044302 387 SI--ELLPGIELLNLN 400 (830)
Q Consensus 387 ~~--~~l~~L~~L~L~ 400 (830)
.+ ..+|+|+.|+|+
T Consensus 212 ~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHHHSBCTTCCEEEEE
T ss_pred HHHHccCCCCcEEEEe
Confidence 11 245556665553
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.40 E-value=3.2e-05 Score=83.98 Aligned_cols=118 Identities=14% Similarity=0.154 Sum_probs=57.9
Q ss_pred ccEEEEEeeccCCCccccccChHhhhCCCCCceEEEcCc--ccCC-CccccccCcceEEEecCCCCCCCCCC-CCCCceE
Q 044302 111 EVVEGMIIDDHFFPENEMHLSAKAFSLMTNLRLLKIGNV--QLPK-GLEYLSNKLRLLVWHQYPLKSLPSNL-QLDKIVE 186 (830)
Q Consensus 111 ~~v~~i~l~~~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~--~l~~-~~~~l~~~Lr~L~l~~~~l~~lp~~~-~l~~L~~ 186 (830)
+.++.+.+... -..+...+|.++.+|+.+.+..+ .+.. .|... +|..+.+.. .++.++... ...+|+.
T Consensus 46 ~~i~~v~ip~~-----vt~Ig~~aF~~C~~L~~I~lp~~v~~Ig~~aF~~c--~l~~i~~~~-~l~~I~~~aF~~~~L~~ 117 (379)
T 4h09_A 46 DRISEVRVNSG-----ITSIGEANFNSCYNMTKVTVASTVTSIGDGAFADT--KLQSYTGME-RVKKFGDYVFQGTDLDD 117 (379)
T ss_dssp GGCSEEEECTT-----EEEECTTTTTTCTTCCEEEECTTCCEECTTTTTTC--CCCEEEECT-TCCEECTTTTTTCCCSE
T ss_pred cCCEEEEeCCC-----ccChHHHHhhCCCCCCEEEeCCcceEechhhhcCC--CCceEECCc-eeeEeccceeccCCccc
Confidence 35666666443 56788899999999999988653 1222 22221 355444432 234443322 3335555
Q ss_pred EEccCCChhhcccCCCCCCcccEEEccCCCCCCCCCCCCCCCceeEEeeeC
Q 044302 187 FEMCYSRIEELWKGIKPLNTLKVMKLSHSENLIKTPNFIEVPNLEVLDLEG 237 (830)
Q Consensus 187 L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~ 237 (830)
+.+..+ ++.+......-.+|+.+.+..+-.......|..+.+++.+.+..
T Consensus 118 i~lp~~-~~~i~~~~F~~~~l~~~~~~~~v~~i~~~~f~~~~~l~~~~~~~ 167 (379)
T 4h09_A 118 FEFPGA-TTEIGNYIFYNSSVKRIVIPKSVTTIKDGIGYKAENLEKIEVSS 167 (379)
T ss_dssp EECCTT-CCEECTTTTTTCCCCEEEECTTCCEECSCTTTTCTTCCEEEECT
T ss_pred ccCCCc-cccccccccccceeeeeeccceeeccccchhccccccccccccc
Confidence 555543 33332222122244444444332222233455555555555543
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.39 E-value=7.8e-05 Score=80.93 Aligned_cols=74 Identities=11% Similarity=0.159 Sum_probs=32.6
Q ss_pred CceEEEccCCChhhccc-CCCCCCcccEEEccCCCCCCCCCCCCCCCceeEEeeeCCcccccccccccCCCCccEEecC
Q 044302 183 KIVEFEMCYSRIEELWK-GIKPLNTLKVMKLSHSENLIKTPNFIEVPNLEVLDLEGCTRLREIHSSLVRHNKLILLNLK 260 (830)
Q Consensus 183 ~L~~L~L~~n~i~~l~~-~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~l~~l~~L~~L~L~ 260 (830)
+|+.+.+.. .++.++. .|..+.+|+.+.|..+-......+|.++ +|+.+.+-. .+..+........+|+.+.+.
T Consensus 47 ~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~v~~Ig~~aF~~c-~l~~i~~~~--~l~~I~~~aF~~~~L~~i~lp 121 (379)
T 4h09_A 47 RISEVRVNS-GITSIGEANFNSCYNMTKVTVASTVTSIGDGAFADT-KLQSYTGME--RVKKFGDYVFQGTDLDDFEFP 121 (379)
T ss_dssp GCSEEEECT-TEEEECTTTTTTCTTCCEEEECTTCCEECTTTTTTC-CCCEEEECT--TCCEECTTTTTTCCCSEEECC
T ss_pred CCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCcceEechhhhcCC-CCceEECCc--eeeEeccceeccCCcccccCC
Confidence 344444432 3444433 3555666666666543211222345554 455554432 233333332233355655554
No 158
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.37 E-value=6.5e-08 Score=112.32 Aligned_cols=107 Identities=15% Similarity=0.128 Sum_probs=82.0
Q ss_pred cceecccccchhhhhhhhhhcccCCCC--ChHHHHHHhhhcCCCccchhhhhccCcceEEeCCC---ceehhHHHHHHHH
Q 044302 3 ILQISFDGLQDSEKKIFLDVACFFKQK--NRDYVTKILEGYGFFPVIGIEVLIERSLLTVDDCN---TLGMHDLLQELGQ 77 (830)
Q Consensus 3 iL~lSYd~L~~~~K~cFl~~a~fp~~~--~~~~l~~~w~a~g~~~~~~~~~L~~~~li~~~~~~---~v~mHDll~d~a~ 77 (830)
+|+.||+.||+++|.||+++|+||+|+ ..+.++.+|.+++..+...++.|+++|||++..+| .++|||++|++++
T Consensus 367 ~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~ 446 (591)
T 1z6t_A 367 AMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLT 446 (591)
T ss_dssp HHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHH
Confidence 578899999999999999999999985 55789999987654567789999999999976433 5899999999988
Q ss_pred HHHh------------hhc-------cCCCCCceecccchhhHHHhhcCcC
Q 044302 78 LIVT------------RQS-------LEEPGKRSRLWRQEEVRHVLTKNAG 109 (830)
Q Consensus 78 ~i~~------------~e~-------~~~~~~~~~l~~~~~i~~vl~~~~~ 109 (830)
+... ... ...++.+...|..+.++|++..+..
T Consensus 447 ~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~a~~~ 497 (591)
T 1z6t_A 447 EKNCSQLQDLHKKIITQFQRYHQPHTLSPDQEDCMYWYNFLAYHMASAKMH 497 (591)
T ss_dssp HHTGGGHHHHHHHHHHHHTTTCCGGGCCTTSTTHHHHHHHHHHHHHHTTCH
T ss_pred hhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCCCEEeehhhHHHHHHhcCCH
Confidence 7621 110 1223455667777788888776643
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.75 E-value=1.3e-05 Score=75.56 Aligned_cols=86 Identities=13% Similarity=0.202 Sum_probs=57.1
Q ss_pred CCceEEEccCCChhhc-ccCCCCCCcccEEEccCCCCCCC--CCCCCCC----CceeEEeeeCCccccc-ccccccCCCC
Q 044302 182 DKIVEFEMCYSRIEEL-WKGIKPLNTLKVMKLSHSENLIK--TPNFIEV----PNLEVLDLEGCTRLRE-IHSSLVRHNK 253 (830)
Q Consensus 182 ~~L~~L~L~~n~i~~l-~~~~~~l~~L~~L~L~~~~~~~~--~~~~~~l----~~L~~L~L~~~~~l~~-~~~~l~~l~~ 253 (830)
.+|+.||++++.|+.. -..+..+++|+.|+|++|..++. +..++.+ ++|++|+|++|..++. --..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 4577777777766642 12456788888888888875443 2234443 4788888888876553 2244567788
Q ss_pred ccEEecCCCCCCcc
Q 044302 254 LILLNLKGCTSLTT 267 (830)
Q Consensus 254 L~~L~L~~c~~l~~ 267 (830)
|++|++++|..++.
T Consensus 141 L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 141 LKYLFLSDLPGVKE 154 (176)
T ss_dssp CCEEEEESCTTCCC
T ss_pred CCEEECCCCCCCCc
Confidence 88888888877765
No 160
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.75 E-value=1.9e-06 Score=83.21 Aligned_cols=59 Identities=10% Similarity=0.089 Sum_probs=29.9
Q ss_pred CccCeecCCCCCCCCCc---cccccCCCCCCCEEeC--CCCCCcc-----cCcccCCCCccCEeecccc
Q 044302 492 CSLTKLDLSDCGLGEGA---ILSDIGNLHSLKALYL--SENNFVT-----LPASISGLFNLEYLKLEDC 550 (830)
Q Consensus 492 ~~L~~L~Ls~~~l~~~~---~~~~l~~l~~L~~L~L--~~n~l~~-----lp~~l~~L~~L~~L~L~~c 550 (830)
++|++|+|++|.+.+.. +...+...++|++|+| ++|.+.. +...+...++|++|+|++|
T Consensus 93 ~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 93 NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp SSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred CCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 34555555555554221 2334445556666666 5566552 3334444556666666655
No 161
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.65 E-value=1.9e-05 Score=76.16 Aligned_cols=14 Identities=14% Similarity=-0.040 Sum_probs=7.4
Q ss_pred CCccCeecCCCCCC
Q 044302 491 LCSLTKLDLSDCGL 504 (830)
Q Consensus 491 l~~L~~L~Ls~~~l 504 (830)
.++|++|+|++|.+
T Consensus 150 n~~L~~L~L~~n~i 163 (185)
T 1io0_A 150 NTTLLKFGYHFTQQ 163 (185)
T ss_dssp CSSCCEEECCCSSH
T ss_pred CCCcCEEeccCCCC
Confidence 34555555555554
No 162
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.58 E-value=1.1e-05 Score=75.94 Aligned_cols=17 Identities=35% Similarity=0.471 Sum_probs=8.1
Q ss_pred CCCccCEeecccccccc
Q 044302 538 GLFNLEYLKLEDCKRLQ 554 (830)
Q Consensus 538 ~L~~L~~L~L~~c~~l~ 554 (830)
.+++|++|+|++|+.++
T Consensus 137 ~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 137 HFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp GCTTCCEEEEESCTTCC
T ss_pred cCCCCCEEECCCCCCCC
Confidence 34455555555554433
No 163
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.22 E-value=0.00024 Score=72.17 Aligned_cols=40 Identities=25% Similarity=0.237 Sum_probs=18.8
Q ss_pred cCCCCCCCEEeCCCCCCcccCcccCCCC--ccCEeeccccccc
Q 044302 513 IGNLHSLKALYLSENNFVTLPASISGLF--NLEYLKLEDCKRL 553 (830)
Q Consensus 513 l~~l~~L~~L~L~~n~l~~lp~~l~~L~--~L~~L~L~~c~~l 553 (830)
+..+++|+.|+|++|.|..+. .+..+. +|++|+|++|+.-
T Consensus 192 ~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 192 VQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTG
T ss_pred HhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCc
Confidence 344555555555555555432 122222 5555555555533
No 164
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.94 E-value=0.00054 Score=69.54 Aligned_cols=17 Identities=29% Similarity=0.346 Sum_probs=9.7
Q ss_pred CCCCccEEecCCCCCCcc
Q 044302 250 RHNKLILLNLKGCTSLTT 267 (830)
Q Consensus 250 ~l~~L~~L~L~~c~~l~~ 267 (830)
++++|+.|+|++ +.+..
T Consensus 168 ~l~~L~~L~Ls~-N~l~~ 184 (267)
T 3rw6_A 168 NIPELLSLNLSN-NRLYR 184 (267)
T ss_dssp HCTTCCEEECTT-SCCCC
T ss_pred hCCCCCEEECCC-CCCCC
Confidence 456666666666 34443
No 165
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.06 E-value=0.022 Score=50.72 Aligned_cols=52 Identities=19% Similarity=0.208 Sum_probs=32.0
Q ss_pred eEEEecCCCC--CCCCCCCCCCceEEEccCCChhhccc-CCCCCCcccEEEccCCC
Q 044302 164 LLVWHQYPLK--SLPSNLQLDKIVEFEMCYSRIEELWK-GIKPLNTLKVMKLSHSE 216 (830)
Q Consensus 164 ~L~l~~~~l~--~lp~~~~l~~L~~L~L~~n~i~~l~~-~~~~l~~L~~L~L~~~~ 216 (830)
.++.+++.++ .+|..+ ..+|++|+|++|+|+.++. .+..+++|++|+|++|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l-p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF-PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCC-CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCC-CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 4455555555 566543 3356666777777766654 35667777777777775
No 166
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.93 E-value=0.027 Score=50.14 Aligned_cols=52 Identities=19% Similarity=0.154 Sum_probs=27.5
Q ss_pred eEEEcCcccC--CCccccccCcceEEEecCCCCCCCCCC--CCCCceEEEccCCCh
Q 044302 143 LLKIGNVQLP--KGLEYLSNKLRLLVWHQYPLKSLPSNL--QLDKIVEFEMCYSRI 194 (830)
Q Consensus 143 ~L~l~~~~l~--~~~~~l~~~Lr~L~l~~~~l~~lp~~~--~l~~L~~L~L~~n~i 194 (830)
.++.+++.+. .....+|.+|++|+|++|.++.+|... .+.+|++|+|.+|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4445555554 444445555555555555555555543 455555555555533
No 167
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.15 E-value=0.023 Score=54.41 Aligned_cols=11 Identities=27% Similarity=0.229 Sum_probs=5.2
Q ss_pred CccCeecCCCC
Q 044302 492 CSLTKLDLSDC 502 (830)
Q Consensus 492 ~~L~~L~Ls~~ 502 (830)
++|+.|+++.+
T Consensus 157 ~tL~~L~l~~~ 167 (197)
T 1pgv_A 157 ESLLRVGISFA 167 (197)
T ss_dssp SSCCEEECCCC
T ss_pred CCcCeEeccCC
Confidence 34455555444
No 168
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.47 E-value=0.013 Score=56.00 Aligned_cols=60 Identities=17% Similarity=0.196 Sum_probs=34.5
Q ss_pred CCccCeecCCCCCCCCC---ccccccCCCCCCCEEeCCCCCCc-----ccCcccCCCCccCEeecccc
Q 044302 491 LCSLTKLDLSDCGLGEG---AILSDIGNLHSLKALYLSENNFV-----TLPASISGLFNLEYLKLEDC 550 (830)
Q Consensus 491 l~~L~~L~Ls~~~l~~~---~~~~~l~~l~~L~~L~L~~n~l~-----~lp~~l~~L~~L~~L~L~~c 550 (830)
-+.|+.|+|++|.+.+. .+...+..-+.|+.|+|++|.|. .+-..+..-+.|++|+|++|
T Consensus 69 N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 69 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 34566666666665431 12233344466777777777776 23345555666777777765
Done!