BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044303
(428 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp
Length = 413
Score = 419 bits (1078), Expect = e-117, Method: Compositional matrix adjust.
Identities = 220/408 (53%), Positives = 279/408 (68%), Gaps = 12/408 (2%)
Query: 26 SFKPKALVVPVTKDSSTLQYLTQIQQRTPLVPVKLTLDLGGGFLWVNCEQGFVSSSYKPA 85
SF+P ALVVPV KD+STLQY+T I QRTPLV L +DLGG FLWV+C+Q +VSS+Y+P
Sbjct: 3 SFRPSALVVPVKKDASTLQYVTTINQRTPLVSENLVVDLGGRFLWVDCDQNYVSSTYRPV 62
Query: 86 RCGSAQCKIAGSESCVESCLPKGPGCNNNTCTHFPGNTVSHVSTFGELATDVVSIQSTDG 145
RC ++QC ++GS +C + PGCNNNTC FP N V + +T GE+A DVVS++STDG
Sbjct: 63 RCRTSQCSLSGSIACGDCFNGPRPGCNNNTCGVFPENPVINTATGGEVAEDVVSVESTDG 122
Query: 146 SKPGQVVPVPNIIFACGATFLLEGLASGFQGMAGLGRNKVSLPSQLSAAAFKLDRKFSIC 205
S G+VV VP IF+C T LL+ LASG GMAGLGR +++LPSQ A+AF RKF++C
Sbjct: 123 SSSGRVVTVPRFIFSCAPTSLLQNLASGVVGMAGLGRTRIALPSQF-ASAFSFKRKFAMC 181
Query: 206 L----SSNGAVFFGDVSF---PGI--DPKSLIYTRLIRNPVXXXXXXXXXXXXXXYFIGV 256
L SSN + FG+ + P I K+L YT L+ NPV YFIGV
Sbjct: 182 LSGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEPSVEYFIGV 241
Query: 257 KSILISGNVVPLNKSLLSINKEGFGGTKISTVFPYTVLETSIYKAFVKTFIKSYS--NIP 314
KSI I+ +V LN SLLSI+ G GGTKIST+ PYTVLETSIYKA + FIK + NI
Sbjct: 242 KSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNIT 301
Query: 315 RVKPMAPFGACFNSSFIGSTHVGAAAPEIHLYMPGTNRMWKIFGAHSMVRVGKHAMCLAF 374
RV +APFGACF++ I ST +G + P I L + + +W I G++SMV + + +CL
Sbjct: 302 RVASVAPFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDNVVCLGV 361
Query: 375 VDGGVNPTTSIVIGAYQLEDNLLQFDLAKSRLGFSSSLLARQTTCSNL 422
VDGG N TSIVIG +QLEDNL+QFDLA SR+GFS +LL +TTC+N
Sbjct: 362 VDGGSNLRTSIVIGGHQLEDNLVQFDLATSRVGFSGTLLGSRTTCANF 409
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp
pdb|3VLB|C Chain C, Crystal Structure Of Xeg-Edgp
Length = 413
Score = 419 bits (1078), Expect = e-117, Method: Compositional matrix adjust.
Identities = 220/408 (53%), Positives = 279/408 (68%), Gaps = 12/408 (2%)
Query: 26 SFKPKALVVPVTKDSSTLQYLTQIQQRTPLVPVKLTLDLGGGFLWVNCEQGFVSSSYKPA 85
SF+P ALVVPV KD+STLQY+T I QRTPLV L +DLGG FLWV+C+Q +VSS+Y+P
Sbjct: 3 SFRPSALVVPVKKDASTLQYVTTINQRTPLVSENLVVDLGGRFLWVDCDQNYVSSTYRPV 62
Query: 86 RCGSAQCKIAGSESCVESCLPKGPGCNNNTCTHFPGNTVSHVSTFGELATDVVSIQSTDG 145
RC ++QC ++GS +C + PGCNNNTC FP N V + +T GE+A DVVS++STDG
Sbjct: 63 RCRTSQCSLSGSIACGDCFNGPRPGCNNNTCGVFPENPVINTATGGEVAEDVVSVESTDG 122
Query: 146 SKPGQVVPVPNIIFACGATFLLEGLASGFQGMAGLGRNKVSLPSQLSAAAFKLDRKFSIC 205
S G+VV VP IF+C T LL+ LASG GMAGLGR +++LPSQ A+AF RKF++C
Sbjct: 123 SSSGRVVTVPRFIFSCAPTSLLQNLASGVVGMAGLGRTRIALPSQF-ASAFSFKRKFAMC 181
Query: 206 L----SSNGAVFFGDVSF---PGI--DPKSLIYTRLIRNPVXXXXXXXXXXXXXXYFIGV 256
L SSN + FG+ + P I K+L YT L+ NPV YFIGV
Sbjct: 182 LSGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEPSVEYFIGV 241
Query: 257 KSILISGNVVPLNKSLLSINKEGFGGTKISTVFPYTVLETSIYKAFVKTFIKSYS--NIP 314
KSI I+ +V LN SLLSI+ G GGTKIST+ PYTVLETSIYKA + FIK + NI
Sbjct: 242 KSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNIT 301
Query: 315 RVKPMAPFGACFNSSFIGSTHVGAAAPEIHLYMPGTNRMWKIFGAHSMVRVGKHAMCLAF 374
RV +APFGACF++ I ST +G + P I L + + +W I G++SMV + + +CL
Sbjct: 302 RVASVAPFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDNVVCLGV 361
Query: 375 VDGGVNPTTSIVIGAYQLEDNLLQFDLAKSRLGFSSSLLARQTTCSNL 422
VDGG N TSIVIG +QLEDNL+QFDLA SR+GFS +LL +TTC+N
Sbjct: 362 VDGGSNLRTSIVIGGHQLEDNLVQFDLATSRVGFSGTLLGSRTTCANF 409
>pdb|3AUP|A Chain A, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|B Chain B, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|C Chain C, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|D Chain D, Crystal Structure Of Basic 7s Globulin From Soybean
Length = 403
Score = 254 bits (649), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 164/414 (39%), Positives = 226/414 (54%), Gaps = 34/414 (8%)
Query: 25 TSFKPKALVV-PVTKDSSTLQYLTQIQQRTPLVPVKLTLDLGGGFLWVNCEQGFVSSSYK 83
T KP LVV PV D ST + +Q+RTPL+ V + +DL G LWVNCEQ + S +Y+
Sbjct: 2 TPTKPINLVVLPVQNDGSTGLHWANLQKRTPLMQVPVLVDLNGNHLWVNCEQQYSSKTYQ 61
Query: 84 PARCGSAQCKIAGSESCVESCLPKGPGCNNNTCTHFPGNTVSHVSTFGELATDVVSIQST 143
C S QC A + C+ PGC+ NTC N ++ + GEL DV++I +T
Sbjct: 62 APFCHSTQCSRANTHQCLSCPAASRPGCHKNTCGLMSTNPITQQTGLGELGEDVLAIHAT 121
Query: 144 DGS--KPGQVVPVPNIIFACGATFLLE-GLASGFQGMAGLGRNKVSLPSQLSAAAFKLDR 200
GS + G +V VP +F+C +FL++ GL QG+AGLG +SLP+QL A+ F L R
Sbjct: 122 QGSTQQLGPLVTVPQFLFSCAPSFLVQKGLPRNTQGVAGLGHAPISLPNQL-ASHFGLQR 180
Query: 201 KFSICLS----SNGAVFFGDV-----SFPGIDPKSLIYTRLIRNPVXXXXXXXXXXXXXX 251
+F+ CLS S GA+ FGD F D I+ L P+
Sbjct: 181 QFTTCLSRYPTSKGAIIFGDAPNNMRQFQNQD----IFHDLAFTPL-------TITLQGE 229
Query: 252 YFIGVKSILISGN-VVPLNKSLLSINKEGFGGTKISTVFPYTVLETSIYKAFVKTFIKSY 310
Y + V SI I+ + V PLNK +I GGT IST P+ VL+ S+Y+AF + F +
Sbjct: 230 YNVRVNSIRINQHSVFPLNKISSTIVGSTSGGTMISTSTPHMVLQQSVYQAFTQVFAQQL 289
Query: 311 SNIPRVKPMAPFGACFNSSFIGSTHVGAAAPEIHLYMPGTN-RMWKIFGAHSMVRVGKHA 369
+VK +APFG CFNS+ I A P + L M N +W+I G MV+
Sbjct: 290 PKQAQVKSVAPFGLCFNSNKIN------AYPSVDLVMDKPNGPVWRISGEDLMVQAQPGV 343
Query: 370 MCLAFVDGGVNPTTSIVIGAYQLEDNLLQFDLAKSRLGFS-SSLLARQTTCSNL 422
CL ++GG+ P I +GA QLE+NL+ FDLA+SR+GFS SSL + C++L
Sbjct: 344 TCLGVMNGGMQPRAEITLGARQLEENLVVFDLARSRVGFSTSSLHSHGVKCADL 397
>pdb|3HD8|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
pdb|3HD8|C Chain C, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
Length = 389
Score = 157 bits (397), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 121/395 (30%), Positives = 187/395 (47%), Gaps = 46/395 (11%)
Query: 32 LVVPVTKDSSTLQYLTQIQQRTPLVPVKLTLDLGGGFLWVNCEQGFVSSSYKPARCGSAQ 91
++ PVTKD++T Y LV LD+ G +W CE G S C S
Sbjct: 5 VLAPVTKDTATSLYTIPFHDGASLV-----LDVAGLLVWSTCEGG---QSPAEIACSSPT 56
Query: 92 CKIAGSESCVESCLPK-GPGCNNNTCTHFPGNTVSHVSTFGELATDVVSIQSTDGSKPGQ 150
C +A + P G ++ CT +P N V+ G L + +TDG+KP
Sbjct: 57 CLLANAYPAPGCPAPSCGSDRHDKPCTAYPSNPVTGACAAGSLFHTRFAANTTDGNKPVS 116
Query: 151 VVPVPNIIFACGATFLLEGLASGFQGMAGLGRNKVSLPSQLSAAAFKLDRKFSICLSSNG 210
V V ++ AC + LL L G G+AGL + ++LPSQ+ A+A K+ KF +CL + G
Sbjct: 117 EVNV-RVLAACAPSKLLASLPRGSTGVAGLAGSGLALPSQV-ASAQKVPNKFLLCLPTGG 174
Query: 211 ---AVFFGD-VSFPGIDPKSLIYTRLIRNPVXXXXXXXXXXXXXXYFIGVKSILISGNVV 266
A+F G + +P +S+ YT L+ ++I +SI + V
Sbjct: 175 PGVAIFGGGPLPWPQFT-QSMDYTPLVAK-----------GGSPAHYISARSIKVENTRV 222
Query: 267 PLNKSLLSINKEGFGGTKISTVFPYTVLETSIYKAFVKTFIKSYSNIPR--------VKP 318
P+++ L+ GG +ST PY +L +Y+ V F K+ + P VKP
Sbjct: 223 PISERALAT-----GGVMLSTRLPYVLLRRDVYRPLVDAFTKALAAQPANGAPVARAVKP 277
Query: 319 MAPFGACFNSSFIGSTHVGAAAPEIHLYMPGTNRMWKIFGAHSMVRVGKHAMCLAFV--- 375
+APF C+++ +G+ G P + L + G + W + G +SMV V C+AFV
Sbjct: 278 VAPFELCYDTKTLGNNPGGYWVPNVLLELDGGSD-WAMTGKNSMVDVKPGTACVAFVEMK 336
Query: 376 --DGGVNPTTSIVIGAYQLEDNLLQFDLAKSRLGF 408
D G ++++G Q+ED +L FD+ K RLGF
Sbjct: 337 GVDAGDGSAPAVILGGAQMEDFVLDFDMEKKRLGF 371
>pdb|1T6E|X Chain X, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor I
pdb|1T6G|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
pdb|1T6G|B Chain B, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
Length = 381
Score = 155 bits (392), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 127/411 (30%), Positives = 196/411 (47%), Gaps = 52/411 (12%)
Query: 32 LVVPVTKDSSTLQYLTQIQQRTPLVPVKLTLDLGGGFLWVNCEQGFVSSSYKPAR--CGS 89
++ PVTKD +T Y LV LD+ G +W C+ G PA C S
Sbjct: 3 VLAPVTKDPATSLYTIPFHDGASLV-----LDVAGPLVWSTCDGG-----QPPAEIPCSS 52
Query: 90 AQCKIAGSESCVESCLPK-GPGCNNNTCTHFPGNTVSHVSTFGELATDVVSIQSTDGSKP 148
C +A + P G ++ CT +P N VS G L+ +TDGSKP
Sbjct: 53 PTCLLANAYPAPGCPAPSCGSDKHDKPCTAYPYNPVSGACAAGSLSHTRFVANTTDGSKP 112
Query: 149 GQVVPVPNIIFACGATFLLEGLASGFQGMAGLGRNKVSLPSQLSAAAFKLDRKFSICLSS 208
V V ++ AC + LL L G G+AGL + ++LP+Q+ A+A K+ +F +CL +
Sbjct: 113 VSKVNV-GVLAACAPSKLLASLPRGSTGVAGLANSGLALPAQV-ASAQKVANRFLLCLPT 170
Query: 209 NG---AVFFGD-VSFPGIDPKSLIYTRLIRNPVXXXXXXXXXXXXXXYFIGVKSILISGN 264
G A+F G V +P +S+ YT L+ ++I +SI++
Sbjct: 171 GGPGVAIFGGGPVPWPQFT-QSMPYTPLVTK-----------GGSPAHYISARSIVVGDT 218
Query: 265 VVPLNKSLLSINKEGFGGTKISTVFPYTVLETSIYK----AFVKTFIKSYSN---IPR-V 316
VP+ + L+ GG +ST PY +L +Y+ AF K ++N + R V
Sbjct: 219 RVPVPEGALAT-----GGVMLSTRLPYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAV 273
Query: 317 KPMAPFGACFNSSFIGSTHVGAAAPEIHLYMPGTNRMWKIFGAHSMVRVGKHAMCLAFVD 376
+ +APFG C+++ +G+ G A P + L + G + W + G +SMV V + C+AFV+
Sbjct: 274 EAVAPFGVCYDTKTLGNNLGGYAVPNVQLGLDGGSD-WTMTGKNSMVDVKQGTACVAFVE 332
Query: 377 -----GGVNPTTSIVIGAYQLEDNLLQFDLAKSRLGFSSSLLARQTTCSNL 422
G ++++G Q+ED +L FD+ K RLGFS L T C L
Sbjct: 333 MKGVAAGDGRAPAVILGGAQMEDFVLDFDMEKKRLGFSR--LPHFTGCGGL 381
>pdb|2B42|A Chain A, Crystal Structure Of The Triticum Xylanse Inhibitor-I In
Complex With Bacillus Subtilis Xylanase
Length = 381
Score = 145 bits (367), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 126/411 (30%), Positives = 193/411 (46%), Gaps = 52/411 (12%)
Query: 32 LVVPVTKDSSTLQYLTQIQQRTPLVPVKLTLDLGGGFLWVNCEQGFVSSSYKPAR--CGS 89
++ PVTKD +T Y LV LD+ G +W C+ G PA C S
Sbjct: 3 VLAPVTKDPATSLYTIPFHDGASLV-----LDVAGPLVWSTCKGG-----QPPAEIPCSS 52
Query: 90 AQCKIAGSESCVESCLPK-GPGCNNNTCTHFPGNTVSHVSTFGELATDVVSIQSTDGSKP 148
C +A + P G ++ CT +P N VS G L+ +TDGSKP
Sbjct: 53 PTCLLANAYPAPGCPAPSCGSDKHDKPCTAYPYNPVSGACAAGSLSHTRFVANTTDGSKP 112
Query: 149 GQVVPVPNIIFACGATFLLEGLASGFQGMAGLGRNKVSLPSQLSAAAFKLDRKFSICLSS 208
V V ++ AC + LL L G G+AGL + ++LP+Q+ A+A K+ +F +CL +
Sbjct: 113 VSKVNV-GVLAACAPSKLLASLPRGSTGVAGLANSGLALPAQV-ASAQKVANRFLLCLPT 170
Query: 209 NG---AVFFGD-VSFPGIDPKSLIYTRLIRNPVXXXXXXXXXXXXXXYFIGVKSILISGN 264
G A+F G V +P +S+ YT L+ ++I +SI++
Sbjct: 171 GGPGVAIFGGGPVPWPQFT-QSMPYTPLVTK-----------GGSPAHYISARSIVVGDT 218
Query: 265 VVPLNKSLLSINKEGFGGTKISTVFPYTVLETSIYK----AFVKTFIKSYSN----IPRV 316
VP+ + L+ GG +ST PY +L +Y+ AF K ++N V
Sbjct: 219 RVPVPEGALAT-----GGVMLSTRLPYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAV 273
Query: 317 KPMAPFGACFNSSFIGSTHVGAAAPEIHLYMPGTNRMWKIFGAHSMVRVGKHAMCLAFVD 376
+APFG C+++ +G+ G A P + L + G + W + G +SMV V + C+AFV+
Sbjct: 274 VAVAPFGVCYDTKTLGNNLGGYAVPNVQLGLDGGSD-WTMTGKNSMVDVKQGTACVAFVE 332
Query: 377 -----GGVNPTTSIVIGAYQLEDNLLQFDLAKSRLGFSSSLLARQTTCSNL 422
G ++++G Q+ED +L FD+ K RLGFS L T C L
Sbjct: 333 MKGVAAGDGRAPAVILGGAQMEDFVLDFDMEKKRLGFSR--LPHFTGCGGL 381
>pdb|2EWY|A Chain A, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|B Chain B, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|C Chain C, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|D Chain D, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
Length = 383
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 11/79 (13%)
Query: 341 PEIHLYMPGTN--RMWKI-----FGAHSMVRVGKHAMCLAFVDGGVNPTT-SIVIGAYQL 392
P+I +Y+ N R ++I M+ G + C F G++P+T ++VIGA +
Sbjct: 279 PKISIYLRDENSSRSFRITILPQLYIQPMMGAGLNYECYRF---GISPSTNALVIGATVM 335
Query: 393 EDNLLQFDLAKSRLGFSSS 411
E + FD A+ R+GF++S
Sbjct: 336 EGFYVIFDRAQKRVGFAAS 354
>pdb|3AWE|A Chain A, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (248-576)
pdb|3AWE|B Chain B, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (248-576)
pdb|3AWE|C Chain C, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (248-576)
Length = 334
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 306 FIKSYSNIPRVKPMAPFGACFNSSFIGSTHVGAAAPEIHLYMPGTNRMWKIFGAHSMVRV 365
F+ + ++PR PF FN+S + HV EI P + WKI+ + V++
Sbjct: 269 FMSTSKSLPRGYDNCPFYFWFNTSLVEGDHVTLKREEID--NPHKKKTWKIYRDNFTVKL 326
>pdb|3AWG|A Chain A, Crystal Structure Of Pten-Like Domain Of Ci-Vsp G356a
Mutant (248-576)
pdb|3AWG|B Chain B, Crystal Structure Of Pten-Like Domain Of Ci-Vsp G356a
Mutant (248-576)
pdb|3AWG|C Chain C, Crystal Structure Of Pten-Like Domain Of Ci-Vsp G356a
Mutant (248-576)
Length = 334
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 306 FIKSYSNIPRVKPMAPFGACFNSSFIGSTHVGAAAPEIHLYMPGTNRMWKIFGAHSMVRV 365
F+ + ++PR PF FN+S + HV EI P + WKI+ + V++
Sbjct: 269 FMSTSKSLPRGYDNCPFYFWFNTSLVEGDHVTLKREEID--NPHKKKTWKIYRDNFTVKL 326
>pdb|3V0I|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
256-576, E411f
Length = 324
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 306 FIKSYSNIPRVKPMAPFGACFNSSFIGSTHVGAAAPEIHLYMPGTNRMWKIFGAHSMVRV 365
F+ + ++PR PF FN+S + HV EI P + WKI+ + V++
Sbjct: 259 FMSTSKSLPRGYDNCPFYFWFNTSLVEGDHVTLKREEID--NPHKKKTWKIYRDNFTVKL 316
>pdb|3V0E|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
256-576(C363s)
Length = 324
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 306 FIKSYSNIPRVKPMAPFGACFNSSFIGSTHVGAAAPEIHLYMPGTNRMWKIFGAHSMVRV 365
F+ + ++PR PF FN+S + HV EI P + WKI+ + V++
Sbjct: 259 FMSTSKSLPRGYDNCPFYFWFNTSLVEGDHVTLKREEID--NPHKKKTWKIYRDNFTVKL 316
>pdb|3AWF|A Chain A, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (236-576)
pdb|3AWF|B Chain B, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (236-576)
pdb|3AWF|C Chain C, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (236-576)
Length = 346
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 306 FIKSYSNIPRVKPMAPFGACFNSSFIGSTHVGAAAPEIHLYMPGTNRMWKIFGAHSMVRV 365
F+ + ++PR PF FN+S + HV EI P + WKI+ + V++
Sbjct: 281 FMSTSKSLPRGYDNCPFYFWFNTSLVEGDHVTLKREEID--NPHKKKTWKIYRDNFTVKL 338
>pdb|3V0J|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Deletion Of 401-405
pdb|3V0J|B Chain B, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Deletion Of 401-405
Length = 334
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 306 FIKSYSNIPRVKPMAPFGACFNSSFIGSTHVGAAAPEIHLYMPGTNRMWKIFGAHSMVRV 365
F+ + ++PR PF FN+S + HV EI P + WKI+ + V++
Sbjct: 269 FMSTSKSLPRGYDNCPFYFWFNTSLVEGDHVTLKREEID--NPHKKKTWKIYRDNFTVKL 326
>pdb|3V0D|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s)
pdb|3V0D|B Chain B, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s)
pdb|3V0F|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Ii
pdb|3V0F|B Chain B, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Ii
pdb|3V0G|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Iii
pdb|3V0G|B Chain B, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Iii
pdb|3V0G|C Chain C, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Iii
pdb|3V0G|D Chain D, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Iii
pdb|3V0H|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Complexed With D-Myo-
Inositol-1,4,5-Triphosphate
pdb|3V0H|B Chain B, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Complexed With D-Myo-
Inositol-1,4,5-Triphosphate
Length = 339
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 306 FIKSYSNIPRVKPMAPFGACFNSSFIGSTHVGAAAPEIHLYMPGTNRMWKIFGAHSMVRV 365
F+ + ++PR PF FN+S + HV EI P + WKI+ + V++
Sbjct: 274 FMSTSKSLPRGYDNCPFYFWFNTSLVEGDHVTLKREEID--NPHKKKTWKIYRDNFTVKL 331
>pdb|1XE3|A Chain A, Crystal Structure Of Purine Nucleoside Phosphorylase Deod
From Bacillus Anthracis
pdb|1XE3|B Chain B, Crystal Structure Of Purine Nucleoside Phosphorylase Deod
From Bacillus Anthracis
pdb|1XE3|C Chain C, Crystal Structure Of Purine Nucleoside Phosphorylase Deod
From Bacillus Anthracis
pdb|1XE3|D Chain D, Crystal Structure Of Purine Nucleoside Phosphorylase Deod
From Bacillus Anthracis
pdb|1XE3|E Chain E, Crystal Structure Of Purine Nucleoside Phosphorylase Deod
From Bacillus Anthracis
pdb|1XE3|F Chain F, Crystal Structure Of Purine Nucleoside Phosphorylase Deod
From Bacillus Anthracis
Length = 245
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 300 KAFVKTFIKSYSNIPRVKPMAPFGACFNSSFIGSTHVGAAAPEIHLYMPGTNRMWKIFGA 359
K +TF++ + V+ M F + + G P I +Y+ N + + +G
Sbjct: 36 KYIAETFLEDVTCYNNVRGMLGFTGTYKGKRVSVQGTGMGVPSISIYV---NELIQSYGV 92
Query: 360 HSMVRVG 366
+++RVG
Sbjct: 93 KNLIRVG 99
>pdb|3APR|E Chain E, Binding Of A Reduced Peptide Inhibitor To The Aspartic
Proteinase From Rhizopus Chinensis. Implications For A
Mechanism Of Action
pdb|4APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|5APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|6APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|2APR|A Chain A, Structure And Refinement At 1.8 Angstroms Resolution Of
The Aspartic Proteinase From Rhizopus Chinensis
Length = 325
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 8/67 (11%)
Query: 33 VVPVTKDSSTLQYLTQIQQRTPLVPVKLTLDLGGGFLWV------NCEQGFVSSSYKPAR 86
VP+T + ++Y Q+ TP L D G LW+ NC G + Y P +
Sbjct: 5 TVPMTDYGNDIEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNCGSG--QTKYDPNQ 62
Query: 87 CGSAQCK 93
+ Q
Sbjct: 63 SSTYQAD 69
>pdb|2AC7|A Chain A, Crystal Structure Of Adenosine Phosphorylase From Bacillus
Cereus With Adenosine Bound In The Active Site
pdb|2AC7|B Chain B, Crystal Structure Of Adenosine Phosphorylase From Bacillus
Cereus With Adenosine Bound In The Active Site
pdb|3UAV|A Chain A, Crystal Structure Of Adenosine Phosphorylase From Bacillus
Cereus
pdb|3UAW|A Chain A, Crystal Structure Of Adenosine Phosphorylase From Bacillus
Cereus Complexed With Adenosine
pdb|3UAX|A Chain A, Crystal Structure Of Adenosine Phosphorylase From Bacillus
Cereus Complexed With Inosine
Length = 235
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 300 KAFVKTFIKSYSNIPRVKPMAPFGACFNSSFIGSTHVGAAAPEIHLYMPGTNRMWKIFGA 359
K +TF++ + V+ M F + + G P I +Y+ N + + +G
Sbjct: 26 KYIAETFLEDVTCYNNVRGMLGFTGTYKGKRVSVQGTGMGVPSISIYV---NELIQSYGV 82
Query: 360 HSMVRVG 366
+++RVG
Sbjct: 83 KNLIRVG 89
>pdb|3UAY|A Chain A, Crystal Structure Of Bacillus Cereus Adenosine
Phosphorylase D204n Mutant Complexed With Adenosine
pdb|3UAZ|A Chain A, Crystal Structure Of Bacillus Cereus Adenosine
Phosphorylase D204n Mutant Complexed With Inosine
Length = 235
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 300 KAFVKTFIKSYSNIPRVKPMAPFGACFNSSFIGSTHVGAAAPEIHLYMPGTNRMWKIFGA 359
K +TF++ + V+ M F + + G P I +Y+ N + + +G
Sbjct: 26 KYIAETFLEDVTCYNNVRGMLGFTGTYKGKRVSVQGTGMGVPSISIYV---NELIQSYGV 82
Query: 360 HSMVRVG 366
+++RVG
Sbjct: 83 KNLIRVG 89
>pdb|1P69|A Chain A, Structural Basis For Variation In Adenovirus Affinity For
The Cellular Receptor Car (P417s Mutant)
Length = 185
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 197 KLDRKFSICLSSNGAVFFGDVSFPGI 222
+LD K ++CL+ NG++ G VS G+
Sbjct: 23 ELDAKLTLCLTKNGSIVNGIVSLVGV 48
>pdb|1KAC|A Chain A, Knob Domain From Adenovirus Serotype 12 In Complex With
Domain 1 Of Its Cellular Receptor Car
pdb|1NOB|A Chain A, Knob Domain From Adenovirus Serotype 12
pdb|1NOB|B Chain B, Knob Domain From Adenovirus Serotype 12
pdb|1NOB|C Chain C, Knob Domain From Adenovirus Serotype 12
pdb|1NOB|D Chain D, Knob Domain From Adenovirus Serotype 12
pdb|1NOB|E Chain E, Knob Domain From Adenovirus Serotype 12
pdb|1NOB|F Chain F, Knob Domain From Adenovirus Serotype 12
Length = 185
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 197 KLDRKFSICLSSNGAVFFGDVSFPGI 222
+LD K ++CL+ NG++ G VS G+
Sbjct: 23 ELDAKLTLCLTKNGSIVNGIVSLVGV 48
>pdb|1P6A|A Chain A, Structural Basis For Variation In Asdenovirus Affinity For
The Cellular Receptor Car (S489y Mutant)
Length = 185
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 197 KLDRKFSICLSSNGAVFFGDVSFPGI 222
+LD K ++CL+ NG++ G VS G+
Sbjct: 23 ELDAKLTLCLTKNGSIVNGIVSLVGV 48
>pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6
pdb|1UH8|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 8.0
pdb|1UH9|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 7.0
Length = 325
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 8/67 (11%)
Query: 33 VVPVTKDSSTLQYLTQIQQRTPLVPVKLTLDLGGGFLWV------NCEQGFVSSSYKPAR 86
VP+T + ++Y Q+ TP L D G LW+ NC G + Y P +
Sbjct: 5 TVPMTDYGNDIEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNC--GSRQTKYDPNQ 62
Query: 87 CGSAQCK 93
+ Q
Sbjct: 63 SSTYQAD 69
>pdb|3FPL|A Chain A, Chimera Of Alcohol Dehydrogenase By Exchange Of The
Cofactor Binding Domain Res 153-295 Of C. Beijerinckii
Adh By T. Brockii Adh
Length = 351
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 16/43 (37%)
Query: 120 PGNTVSHVSTFGELATDVVSIQSTDGSKPGQVVPVPNIIFACG 162
PG T+++V+ FGE G+V+PVP + + CG
Sbjct: 258 PGGTIANVNYFGE----------------GEVLPVPRLEWGCG 284
>pdb|1YKF|A Chain A, Nadp-Dependent Alcohol Dehydrogenase From Thermoanaerobium
Brockii
pdb|1YKF|B Chain B, Nadp-Dependent Alcohol Dehydrogenase From Thermoanaerobium
Brockii
pdb|1YKF|C Chain C, Nadp-Dependent Alcohol Dehydrogenase From Thermoanaerobium
Brockii
pdb|1YKF|D Chain D, Nadp-Dependent Alcohol Dehydrogenase From Thermoanaerobium
Brockii
pdb|1BXZ|A Chain A, Crystal Structure Of A Thermophilic Alcohol Dehydrogenase
Substrate Complex From Thermoanaerobacter Brockii
pdb|1BXZ|B Chain B, Crystal Structure Of A Thermophilic Alcohol Dehydrogenase
Substrate Complex From Thermoanaerobacter Brockii
pdb|1BXZ|C Chain C, Crystal Structure Of A Thermophilic Alcohol Dehydrogenase
Substrate Complex From Thermoanaerobacter Brockii
pdb|1BXZ|D Chain D, Crystal Structure Of A Thermophilic Alcohol Dehydrogenase
Substrate Complex From Thermoanaerobacter Brockii
Length = 352
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 16/43 (37%)
Query: 120 PGNTVSHVSTFGELATDVVSIQSTDGSKPGQVVPVPNIIFACG 162
PG T+++V+ FGE G+V+PVP + + CG
Sbjct: 258 PGGTIANVNYFGE----------------GEVLPVPRLEWGCG 284
>pdb|3GTN|A Chain A, Crystal Structure Of Xync From Bacillus Subtilis 168
pdb|3GTN|B Chain B, Crystal Structure Of Xync From Bacillus Subtilis 168
pdb|3KL0|A Chain A, Crystal Structure Of The Glucuronoxylan Xylanohydrolase
Xync From Bacillus Subtilis
pdb|3KL0|B Chain B, Crystal Structure Of The Glucuronoxylan Xylanohydrolase
Xync From Bacillus Subtilis
pdb|3KL0|C Chain C, Crystal Structure Of The Glucuronoxylan Xylanohydrolase
Xync From Bacillus Subtilis
pdb|3KL0|D Chain D, Crystal Structure Of The Glucuronoxylan Xylanohydrolase
Xync From Bacillus Subtilis
pdb|3KL3|A Chain A, Crystal Structure Of Ligand Bound Xync
pdb|3KL3|B Chain B, Crystal Structure Of Ligand Bound Xync
pdb|3KL3|C Chain C, Crystal Structure Of Ligand Bound Xync
pdb|3KL3|D Chain D, Crystal Structure Of Ligand Bound Xync
pdb|3KL5|A Chain A, Structure Analysis Of A Xylanase From Glycosyl Hydrolase
Family Thirty: Carbohydrate Ligand Complexes Reveal This
Family Of Enzymes Unique Mechanism Of Substrate
Specificity And Recognition
pdb|3KL5|B Chain B, Structure Analysis Of A Xylanase From Glycosyl Hydrolase
Family Thirty: Carbohydrate Ligand Complexes Reveal This
Family Of Enzymes Unique Mechanism Of Substrate
Specificity And Recognition
pdb|3KL5|C Chain C, Structure Analysis Of A Xylanase From Glycosyl Hydrolase
Family Thirty: Carbohydrate Ligand Complexes Reveal This
Family Of Enzymes Unique Mechanism Of Substrate
Specificity And Recognition
pdb|3KL5|D Chain D, Structure Analysis Of A Xylanase From Glycosyl Hydrolase
Family Thirty: Carbohydrate Ligand Complexes Reveal This
Family Of Enzymes Unique Mechanism Of Substrate
Specificity And Recognition
Length = 401
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/61 (22%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Query: 375 VDGGVNPTTSIVIGAYQLEDNLLQFDLAKSRLGFSSSLLARQTTCSNL-------TSNLK 427
+D NP ++ + AY+ ++ ++ + KS G + + + + + SN+ +SNL+
Sbjct: 304 IDATKNPNANVYVSAYKGDNKVVIVAINKSNTGVNQNFVLQNGSASNVSRWITSSSSNLQ 363
Query: 428 P 428
P
Sbjct: 364 P 364
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,981,758
Number of Sequences: 62578
Number of extensions: 483996
Number of successful extensions: 1006
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 960
Number of HSP's gapped (non-prelim): 35
length of query: 428
length of database: 14,973,337
effective HSP length: 102
effective length of query: 326
effective length of database: 8,590,381
effective search space: 2800464206
effective search space used: 2800464206
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)