Query 044303
Match_columns 428
No_of_seqs 184 out of 1147
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 13:19:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044303.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044303hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 7.7E-58 1.7E-62 460.7 36.6 330 41-422 81-431 (431)
2 cd05489 xylanase_inhibitor_I_l 100.0 1.9E-57 4.1E-62 448.3 36.0 348 51-412 2-362 (362)
3 cd05472 cnd41_like Chloroplast 100.0 8.9E-55 1.9E-59 421.0 33.4 293 44-419 1-299 (299)
4 KOG1339 Aspartyl protease [Pos 100.0 4.5E-53 9.8E-58 423.6 32.5 326 41-412 43-393 (398)
5 cd06096 Plasmepsin_5 Plasmepsi 100.0 2.7E-51 5.8E-56 401.1 30.1 295 43-420 2-326 (326)
6 cd05478 pepsin_A Pepsin A, asp 100.0 2.9E-51 6.3E-56 399.5 28.8 302 35-410 2-317 (317)
7 cd05490 Cathepsin_D2 Cathepsin 100.0 3.3E-51 7E-56 400.6 29.2 303 41-410 3-325 (325)
8 PTZ00165 aspartyl protease; Pr 100.0 7.5E-51 1.6E-55 412.1 31.7 310 32-411 109-446 (482)
9 cd05486 Cathespin_E Cathepsin 100.0 6.8E-51 1.5E-55 396.7 27.8 296 45-410 1-316 (316)
10 cd05475 nucellin_like Nucellin 100.0 2.1E-50 4.5E-55 385.1 29.4 266 43-419 1-273 (273)
11 cd06098 phytepsin Phytepsin, a 100.0 3.2E-50 7E-55 391.9 30.1 296 35-410 2-317 (317)
12 cd05476 pepsin_A_like_plant Ch 100.0 3.5E-50 7.7E-55 382.1 28.4 258 44-419 1-265 (265)
13 cd05488 Proteinase_A_fungi Fun 100.0 2.8E-50 6E-55 393.0 28.1 304 34-410 1-320 (320)
14 cd05477 gastricsin Gastricsins 100.0 6.2E-50 1.4E-54 390.4 30.5 299 42-410 1-317 (318)
15 cd05485 Cathepsin_D_like Cathe 100.0 2.1E-49 4.5E-54 388.1 29.5 307 35-410 3-329 (329)
16 cd05487 renin_like Renin stimu 100.0 3.9E-49 8.4E-54 385.9 29.1 301 41-410 5-325 (326)
17 PTZ00013 plasmepsin 4 (PM4); P 100.0 8.5E-49 1.8E-53 393.5 31.5 307 30-412 125-449 (450)
18 PTZ00147 plasmepsin-1; Provisi 100.0 7.2E-49 1.6E-53 394.8 29.5 308 29-412 125-450 (453)
19 cd05473 beta_secretase_like Be 100.0 2.2E-47 4.8E-52 379.0 29.6 316 43-422 2-350 (364)
20 cd05474 SAP_like SAPs, pepsin- 100.0 9.5E-47 2.1E-51 364.2 26.5 272 43-410 1-294 (295)
21 cd06097 Aspergillopepsin_like 100.0 1.8E-45 3.8E-50 352.3 23.7 264 45-410 1-278 (278)
22 PF00026 Asp: Eukaryotic aspar 100.0 9.4E-44 2E-48 346.4 20.8 298 44-410 1-316 (317)
23 cd05471 pepsin_like Pepsin-lik 100.0 3.9E-42 8.5E-47 329.4 27.5 269 45-410 1-283 (283)
24 PF14543 TAXi_N: Xylanase inhi 100.0 3.8E-29 8.2E-34 219.9 14.0 155 45-216 1-164 (164)
25 PF14541 TAXi_C: Xylanase inhi 100.0 2.9E-27 6.2E-32 207.7 15.8 158 251-410 1-161 (161)
26 cd05470 pepsin_retropepsin_lik 99.8 9.3E-19 2E-23 143.3 11.0 107 47-180 1-109 (109)
27 cd05483 retropepsin_like_bacte 97.7 9.7E-05 2.1E-09 58.1 6.8 93 44-182 2-94 (96)
28 TIGR02281 clan_AA_DTGA clan AA 96.5 0.015 3.3E-07 48.1 8.3 102 34-182 2-103 (121)
29 PF13650 Asp_protease_2: Aspar 95.3 0.11 2.3E-06 40.0 7.7 24 47-72 1-24 (90)
30 cd05479 RP_DDI RP_DDI; retrope 95.2 0.27 6E-06 40.8 10.5 25 384-408 100-124 (124)
31 cd05479 RP_DDI RP_DDI; retrope 93.7 0.51 1.1E-05 39.1 8.8 31 41-73 13-43 (124)
32 PF08284 RVP_2: Retroviral asp 92.3 0.92 2E-05 38.3 8.4 26 385-410 106-131 (135)
33 cd05484 retropepsin_like_LTR_2 91.1 0.25 5.4E-06 38.4 3.4 27 45-73 1-27 (91)
34 TIGR03698 clan_AA_DTGF clan AA 88.8 3.6 7.8E-05 33.1 8.5 23 384-406 85-107 (107)
35 PF13975 gag-asp_proteas: gag- 87.2 1.1 2.4E-05 33.2 4.3 31 41-73 5-35 (72)
36 TIGR02281 clan_AA_DTGA clan AA 86.9 1.7 3.6E-05 35.9 5.6 36 249-302 9-44 (121)
37 PF13650 Asp_protease_2: Aspar 85.3 1.3 2.8E-05 33.7 4.0 20 283-302 12-31 (90)
38 cd05484 retropepsin_like_LTR_2 83.2 1.9 4.1E-05 33.4 4.1 30 258-302 4-33 (91)
39 PF00077 RVP: Retroviral aspar 81.9 2 4.4E-05 33.7 3.9 28 45-74 6-33 (100)
40 cd05483 retropepsin_like_bacte 77.9 4.4 9.6E-05 31.0 4.6 20 283-302 16-35 (96)
41 PF13975 gag-asp_proteas: gag- 77.8 4.3 9.2E-05 30.0 4.2 30 258-302 12-41 (72)
42 cd06095 RP_RTVL_H_like Retrope 77.3 3.3 7.3E-05 31.7 3.7 29 259-302 3-31 (86)
43 COG3577 Predicted aspartyl pro 69.7 18 0.00038 32.6 6.7 41 30-73 92-132 (215)
44 PF00077 RVP: Retroviral aspar 68.0 5.4 0.00012 31.2 3.0 26 257-297 8-33 (100)
45 PF12384 Peptidase_A2B: Ty3 tr 68.0 18 0.0004 31.3 6.2 21 282-302 47-67 (177)
46 cd05482 HIV_retropepsin_like R 65.1 8.2 0.00018 29.8 3.3 24 48-73 2-25 (87)
47 cd06095 RP_RTVL_H_like Retrope 63.7 8.4 0.00018 29.4 3.2 25 48-74 2-26 (86)
48 cd05481 retropepsin_like_LTR_1 61.0 10 0.00022 29.6 3.2 20 283-302 13-32 (93)
49 COG3577 Predicted aspartyl pro 60.7 19 0.00041 32.4 5.1 35 249-301 103-137 (215)
50 PF12384 Peptidase_A2B: Ty3 tr 54.1 17 0.00036 31.6 3.6 42 32-73 18-61 (177)
51 cd06094 RP_Saci_like RP_Saci_l 52.1 1.1E+02 0.0024 23.7 7.7 18 280-297 9-26 (89)
52 COG5550 Predicted aspartyl pro 49.9 12 0.00025 30.8 1.9 20 283-302 29-49 (125)
53 cd05475 nucellin_like Nucellin 49.4 24 0.00051 33.3 4.3 44 31-74 145-194 (273)
54 PF09668 Asp_protease: Asparty 46.6 27 0.00059 28.9 3.6 29 258-301 28-56 (124)
55 PF09668 Asp_protease: Asparty 45.7 31 0.00068 28.6 3.9 30 41-72 21-50 (124)
56 PF02160 Peptidase_A3: Caulifl 39.9 1.9E+02 0.004 26.2 8.1 26 384-410 92-117 (201)
57 PF11925 DUF3443: Protein of u 39.3 1.5E+02 0.0032 29.4 8.0 31 43-73 22-57 (370)
58 PLN03146 aspartyl protease fam 37.3 45 0.00099 33.9 4.4 43 31-73 267-323 (431)
59 PF12508 DUF3714: Protein of u 34.6 1.3E+02 0.0028 27.2 6.3 52 249-311 100-151 (200)
60 cd05471 pepsin_like Pepsin-lik 32.4 68 0.0015 29.8 4.6 45 29-74 167-219 (283)
61 cd05476 pepsin_A_like_plant Ch 31.6 81 0.0018 29.4 4.9 46 29-74 131-193 (265)
62 TIGR03698 clan_AA_DTGF clan AA 31.3 60 0.0013 25.9 3.4 26 47-72 2-32 (107)
63 PF07172 GRP: Glycine rich pro 31.2 34 0.00074 26.9 1.8 23 1-24 1-25 (95)
64 cd06097 Aspergillopepsin_like 28.2 85 0.0019 29.5 4.4 42 30-73 166-214 (278)
65 cd05474 SAP_like SAPs, pepsin- 27.8 85 0.0018 29.7 4.4 44 31-74 139-195 (295)
66 cd05472 cnd41_like Chloroplast 27.4 62 0.0013 30.8 3.4 45 29-73 131-187 (299)
67 PF08284 RVP_2: Retroviral asp 24.4 99 0.0022 25.9 3.6 29 43-73 20-48 (135)
68 cd06098 phytepsin Phytepsin, a 24.1 72 0.0016 30.8 3.2 31 43-73 188-226 (317)
69 cd06096 Plasmepsin_5 Plasmepsi 23.7 94 0.002 30.1 3.9 39 32-73 200-247 (326)
70 KOG1339 Aspartyl protease [Pos 23.5 1.2E+02 0.0027 30.3 4.8 43 31-74 231-285 (398)
71 PF15240 Pro-rich: Proline-ric 22.8 51 0.0011 29.0 1.6 18 8-25 1-18 (179)
72 cd00303 retropepsin_like Retro 21.0 1.6E+02 0.0034 20.6 3.9 20 282-301 11-30 (92)
73 cd05485 Cathepsin_D_like Cathe 20.3 1.2E+02 0.0026 29.5 3.8 40 31-73 181-226 (329)
74 PF15409 PH_8: Pleckstrin homo 20.3 2.5E+02 0.0055 21.7 4.8 29 280-308 56-87 (89)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=7.7e-58 Score=460.68 Aligned_cols=330 Identities=26% Similarity=0.454 Sum_probs=265.6
Q ss_pred CCceEEEEEEecCCCceEEEEEecCCCceeecCCCC-------------CCCCCcccccCCCcccCCCCCCC-ccCCCCC
Q 044303 41 STLQYLTQIQQRTPLVPVKLTLDLGGGFLWVNCEQG-------------FVSSSYKPARCGSAQCKIAGSES-CVESCLP 106 (428)
Q Consensus 41 ~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~c-------------~~S~t~~~~~c~s~~C~~~~~~~-c~~~~~~ 106 (428)
.+++|+++|.||||||++.|+|||||+++||+|.+| .+|+||+.++|.++.|+...... |.
T Consensus 81 ~~~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~~~c~----- 155 (431)
T PLN03146 81 NGGEYLMNISIGTPPVPILAIADTGSDLIWTQCKPCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQASCS----- 155 (431)
T ss_pred CCccEEEEEEcCCCCceEEEEECCCCCcceEcCCCCcccccCCCCcccCCCCCCCcccCCCCcccccCCCCCCCC-----
Confidence 467999999999999999999999999999999876 27999999999999997654322 32
Q ss_pred CCCCCCCCCCcceecCCCCCceeeeEEEEEEEEeecCCCCCCCcceecCceEEeccccccccCcCCCcceEEecCCCCCc
Q 044303 107 KGPGCNNNTCTHFPGNTVSHVSTFGELATDVVSIQSTDGSKPGQVVPVPNIIFACGATFLLEGLASGFQGMAGLGRNKVS 186 (428)
Q Consensus 107 ~~~~~~~~~c~~~~~Y~~~~~~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~GIlGLg~~~~S 186 (428)
.++.|.|.+.|+ |++.+.|.+++|+|+|++..+ +.++++++.|||++.+.+. +....+||||||++++|
T Consensus 156 -----~~~~c~y~i~Yg-dgs~~~G~l~~Dtltlg~~~~----~~~~v~~~~FGc~~~~~g~-f~~~~~GilGLG~~~~S 224 (431)
T PLN03146 156 -----DENTCTYSYSYG-DGSFTKGNLAVETLTIGSTSG----RPVSFPGIVFGCGHNNGGT-FDEKGSGIVGLGGGPLS 224 (431)
T ss_pred -----CCCCCeeEEEeC-CCCceeeEEEEEEEEeccCCC----CcceeCCEEEeCCCCCCCC-ccCCCceeEecCCCCcc
Confidence 335699999996 888899999999999987421 2246889999999987322 22357999999999999
Q ss_pred hHHhhhhhhccCCCcEEEecCC-----C--CceEecCCCCCCCCCCCceEeeceeCCCCCCCCCcCCCCCcceEEEEeEE
Q 044303 187 LPSQLSAAAFKLDRKFSICLSS-----N--GAVFFGDVSFPGIDPKSLIYTRLIRNPVSSAGASFEGESSAEYFIGVKSI 259 (428)
Q Consensus 187 ~~~ql~~~~~~~~~~FS~~L~~-----~--G~l~fGg~d~~~~~~g~l~~tpl~~~~~~~~~~~~~~~~~~~y~v~l~~i 259 (428)
+++|+.. . +.++||+||.+ . |.|+||+.... ..+.+.||||+.+. .+.+|.|+|++|
T Consensus 225 l~sql~~-~--~~~~FSycL~~~~~~~~~~g~l~fG~~~~~--~~~~~~~tPl~~~~-----------~~~~y~V~L~gI 288 (431)
T PLN03146 225 LISQLGS-S--IGGKFSYCLVPLSSDSNGTSKINFGTNAIV--SGSGVVSTPLVSKD-----------PDTFYYLTLEAI 288 (431)
T ss_pred HHHHhhH-h--hCCcEEEECCCCCCCCCCcceEEeCCcccc--CCCCceEcccccCC-----------CCCeEEEeEEEE
Confidence 9999976 3 44699999963 1 89999996421 11358999998643 257899999999
Q ss_pred EEcCeEeeccccccccccCCCCCeEEeccccceecCHHHHHHHHHHHHHhccCCCCCCCCCCCccceecCCCCCCCcCCC
Q 044303 260 LISGNVVPLNKSLLSINKEGFGGTKISTVFPYTVLETSIYKAFVKTFIKSYSNIPRVKPMAPFGACFNSSFIGSTHVGAA 339 (428)
Q Consensus 260 ~v~~~~l~~~~~~~~~~~~~~~~~iiDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~ 339 (428)
+||++++.++...+. ..+.+++||||||++++||+++|++|+++|.+.+...+..+....+..||+.... ..
T Consensus 289 sVgg~~l~~~~~~~~--~~~~g~~iiDSGTt~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~------~~ 360 (431)
T PLN03146 289 SVGSKKLPYTGSSKN--GVEEGNIIIDSGTTLTLLPSDFYSELESAVEEAIGGERVSDPQGLLSLCYSSTSD------IK 360 (431)
T ss_pred EECCEECcCCccccc--cCCCCcEEEeCCccceecCHHHHHHHHHHHHHHhccccCCCCCCCCCccccCCCC------CC
Confidence 999999887765443 2334689999999999999999999999999888632222223346789975321 36
Q ss_pred CCeEEEEEcCCceEEEEeccccEEEeCCCeEEEEEEeCCCCCCCceeechhhhcceEEEEeCCCCEEEEeecCccccCCc
Q 044303 340 APEIHLYMPGTNRMWKIFGAHSMVRVGKHAMCLAFVDGGVNPTTSIVIGAYQLEDNLLQFDLAKSRLGFSSSLLARQTTC 419 (428)
Q Consensus 340 ~P~i~~~f~g~~~~~~i~~~~y~~~~~~~~~C~~~~~~~~~~~~~~ILG~~flr~~yvvFD~e~~rIGfa~~~~~~~~~C 419 (428)
+|+|+|+|+| +.++|++++|++...++..|+++.... +.||||+.|||++|||||.+++|||||+ ++|
T Consensus 361 ~P~i~~~F~G--a~~~l~~~~~~~~~~~~~~Cl~~~~~~----~~~IlG~~~q~~~~vvyDl~~~~igFa~------~~C 428 (431)
T PLN03146 361 LPIITAHFTG--ADVKLQPLNTFVKVSEDLVCFAMIPTS----SIAIFGNLAQMNFLVGYDLESKTVSFKP------TDC 428 (431)
T ss_pred CCeEEEEECC--CeeecCcceeEEEcCCCcEEEEEecCC----CceEECeeeEeeEEEEEECCCCEEeeec------CCc
Confidence 8999999997 899999999999877778999987652 3699999999999999999999999998 899
Q ss_pred ccc
Q 044303 420 SNL 422 (428)
Q Consensus 420 ~~~ 422 (428)
.++
T Consensus 429 ~~~ 431 (431)
T PLN03146 429 TKM 431 (431)
T ss_pred CcC
Confidence 864
No 2
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=1.9e-57 Score=448.28 Aligned_cols=348 Identities=49% Similarity=0.842 Sum_probs=274.4
Q ss_pred ecCCCce-EEEEEecCCCceeecCCCCCCCCCcccccCCCcccCCCCCCCccCCCCC-CCCCCCCCCCcceec-CCCCCc
Q 044303 51 QRTPLVP-VKLTLDLGGGFLWVNCEQGFVSSSYKPARCGSAQCKIAGSESCVESCLP-KGPGCNNNTCTHFPG-NTVSHV 127 (428)
Q Consensus 51 iGtP~Q~-~~v~~DTGSs~~wv~~~~c~~S~t~~~~~c~s~~C~~~~~~~c~~~~~~-~~~~~~~~~c~~~~~-Y~~~~~ 127 (428)
+|||..+ +.|+|||||+++||+|.+| +|+||+.++|.+..|+.+..++|.+.|.. .+..|.++.|.|... |+ +++
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~~-~sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~c~~~~C~y~~~~y~-~gs 79 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDAG-HSSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPGCGNNTCTAHPYNPV-TGE 79 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCCC-CcCCCCccCcCChhhccccccCCCccccCCCCCCCCCCcCeeEccccc-cCc
Confidence 6889888 9999999999999999987 46699999999999998877777654543 234677778998765 63 788
Q ss_pred eeeeEEEEEEEEeecCCCCCCCcceecCceEEeccccccccCcCCCcceEEecCCCCCchHHhhhhhhccCCCcEEEecC
Q 044303 128 STFGELATDVVSIQSTDGSKPGQVVPVPNIIFACGATFLLEGLASGFQGMAGLGRNKVSLPSQLSAAAFKLDRKFSICLS 207 (428)
Q Consensus 128 ~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~GIlGLg~~~~S~~~ql~~~~~~~~~~FS~~L~ 207 (428)
.+.|++++|+|+|+..++.... .++++++.|||+......++....+||||||++++|++.||.. ++..+++||+||.
T Consensus 80 ~t~G~l~~Dtl~~~~~~g~~~~-~~~~~~~~FGC~~~~~~~~~~~~~dGIlGLg~~~lSl~sql~~-~~~~~~~FS~CL~ 157 (362)
T cd05489 80 CATGDLTQDVLSANTTDGSNPL-LVVIFNFVFSCAPSLLLKGLPPGAQGVAGLGRSPLSLPAQLAS-AFGVARKFALCLP 157 (362)
T ss_pred EeeEEEEEEEEEecccCCCCcc-cceeCCEEEEcCCcccccCCccccccccccCCCccchHHHhhh-hcCCCcceEEEeC
Confidence 9999999999999865432111 1367899999998864334445689999999999999999988 6556789999998
Q ss_pred CC----CceEecCCCCCCC----CC-CCceEeeceeCCCCCCCCCcCCCCCcceEEEEeEEEEcCeEeeccccccccccC
Q 044303 208 SN----GAVFFGDVSFPGI----DP-KSLIYTRLIRNPVSSAGASFEGESSAEYFIGVKSILISGNVVPLNKSLLSINKE 278 (428)
Q Consensus 208 ~~----G~l~fGg~d~~~~----~~-g~l~~tpl~~~~~~~~~~~~~~~~~~~y~v~l~~i~v~~~~l~~~~~~~~~~~~ 278 (428)
++ |.|+||+.+.... +. +.+.||||+.++. .+.+|.|+|++|+||++++.+++..++....
T Consensus 158 ~~~~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~----------~~~~Y~v~l~~IsVg~~~l~~~~~~~~~~~~ 227 (362)
T cd05489 158 SSPGGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPR----------KSGEYYIGVTSIAVNGHAVPLNPTLSANDRL 227 (362)
T ss_pred CCCCCCeeEEECCCchhcccccccccCCccccccccCCC----------CCCceEEEEEEEEECCEECCCCchhcccccc
Confidence 73 9999999873111 12 6899999997641 2479999999999999999877665554445
Q ss_pred CCCCeEEeccccceecCHHHHHHHHHHHHHhccCCCCCCCC-CCCccceecCCCCCCCcCCCCCeEEEEEcCCceEEEEe
Q 044303 279 GFGGTKISTVFPYTVLETSIYKAFVKTFIKSYSNIPRVKPM-APFGACFNSSFIGSTHVGAAAPEIHLYMPGTNRMWKIF 357 (428)
Q Consensus 279 ~~~~~iiDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~~~~~-~~~~~C~~~~~~~~~~~~~~~P~i~~~f~g~~~~~~i~ 357 (428)
+.+++||||||++++||+++|++|.+++.+++......... ...+.||+............+|+|+|+|+|++++|+|+
T Consensus 228 ~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~it~~f~g~g~~~~l~ 307 (362)
T cd05489 228 GPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPRVPAAAVFPELCYPASALGNTRLGYAVPAIDLVLDGGGVNWTIF 307 (362)
T ss_pred CCCcEEEecCCceEEECHHHHHHHHHHHHHHhcccCcCCCCCCCcCccccCCCcCCcccccccceEEEEEeCCCeEEEEc
Confidence 56789999999999999999999999999887643322221 12368998653221112358999999998635999999
Q ss_pred ccccEEEeCCCeEEEEEEeCCCCCCCceeechhhhcceEEEEeCCCCEEEEeecC
Q 044303 358 GAHSMVRVGKHAMCLAFVDGGVNPTTSIVIGAYQLEDNLLQFDLAKSRLGFSSSL 412 (428)
Q Consensus 358 ~~~y~~~~~~~~~C~~~~~~~~~~~~~~ILG~~flr~~yvvFD~e~~rIGfa~~~ 412 (428)
|++|+++..++..|+++...+....+.||||+.|||++|+|||.+++|||||+++
T Consensus 308 ~~ny~~~~~~~~~Cl~f~~~~~~~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~~ 362 (362)
T cd05489 308 GANSMVQVKGGVACLAFVDGGSEPRPAVVIGGHQMEDNLLVFDLEKSRLGFSSSL 362 (362)
T ss_pred CCceEEEcCCCcEEEEEeeCCCCCCceEEEeeheecceEEEEECCCCEeecccCC
Confidence 9999998777789999987654324579999999999999999999999999864
No 3
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=8.9e-55 Score=420.98 Aligned_cols=293 Identities=28% Similarity=0.505 Sum_probs=237.0
Q ss_pred eEEEEEEecCCCceEEEEEecCCCceeecCCCCCCCCCcccccCCCcccCCCCCCCccCCCCCCCCCCCCCCCcceecCC
Q 044303 44 QYLTQIQQRTPLVPVKLTLDLGGGFLWVNCEQGFVSSSYKPARCGSAQCKIAGSESCVESCLPKGPGCNNNTCTHFPGNT 123 (428)
Q Consensus 44 ~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~c~~S~t~~~~~c~s~~C~~~~~~~c~~~~~~~~~~~~~~~c~~~~~Y~ 123 (428)
+|+++|.||||||++.|+|||||+++||+|.+| |.|.+.|+
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c---------------------------------------~~~~i~Yg 41 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC---------------------------------------CLYQVSYG 41 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCCC---------------------------------------CeeeeEeC
Confidence 599999999999999999999999999987532 45889996
Q ss_pred CCCceeeeEEEEEEEEeecCCCCCCCcceecCceEEeccccccccCcCCCcceEEecCCCCCchHHhhhhhhccCCCcEE
Q 044303 124 VSHVSTFGELATDVVSIQSTDGSKPGQVVPVPNIIFACGATFLLEGLASGFQGMAGLGRNKVSLPSQLSAAAFKLDRKFS 203 (428)
Q Consensus 124 ~~~~~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~GIlGLg~~~~S~~~ql~~~~~~~~~~FS 203 (428)
+++.++|.+++|+|+|++.. .++++.|||+..+. +.....+||||||++..+++.|+.. + .+++||
T Consensus 42 -~Gs~~~G~~~~D~v~ig~~~--------~~~~~~Fg~~~~~~--~~~~~~~GilGLg~~~~s~~~ql~~-~--~~~~FS 107 (299)
T cd05472 42 -DGSYTTGDLATDTLTLGSSD--------VVPGFAFGCGHDNE--GLFGGAAGLLGLGRGKLSLPSQTAS-S--YGGVFS 107 (299)
T ss_pred -CCceEEEEEEEEEEEeCCCC--------ccCCEEEECCccCC--CccCCCCEEEECCCCcchHHHHhhH-h--hcCceE
Confidence 88888999999999998741 57889999998773 3334689999999999999999876 4 458999
Q ss_pred EecCC---C--CceEecCCCCCCCCCCCceEeeceeCCCCCCCCCcCCCCCcceEEEEeEEEEcCeEeeccccccccccC
Q 044303 204 ICLSS---N--GAVFFGDVSFPGIDPKSLIYTRLIRNPVSSAGASFEGESSAEYFIGVKSILISGNVVPLNKSLLSINKE 278 (428)
Q Consensus 204 ~~L~~---~--G~l~fGg~d~~~~~~g~l~~tpl~~~~~~~~~~~~~~~~~~~y~v~l~~i~v~~~~l~~~~~~~~~~~~ 278 (428)
+||.+ . |+|+|||+|.. .+++.|+|++.++. .+.+|.|+|++|+|+++.+..+... .
T Consensus 108 ~~L~~~~~~~~G~l~fGg~d~~---~g~l~~~pv~~~~~----------~~~~y~v~l~~i~vg~~~~~~~~~~-----~ 169 (299)
T cd05472 108 YCLPDRSSSSSGYLSFGAAASV---PAGASFTPMLSNPR----------VPTFYYVGLTGISVGGRRLPIPPAS-----F 169 (299)
T ss_pred EEccCCCCCCCceEEeCCcccc---CCCceECCCccCCC----------CCCeEEEeeEEEEECCEECCCCccc-----c
Confidence 99986 3 99999999943 28999999987642 2469999999999999988654211 1
Q ss_pred CCCCeEEeccccceecCHHHHHHHHHHHHHhccCCCCCCCCCCCccceecCCCCCCCcCCCCCeEEEEEcCCceEEEEec
Q 044303 279 GFGGTKISTVFPYTVLETSIYKAFVKTFIKSYSNIPRVKPMAPFGACFNSSFIGSTHVGAAAPEIHLYMPGTNRMWKIFG 358 (428)
Q Consensus 279 ~~~~~iiDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~~~f~g~~~~~~i~~ 358 (428)
....+||||||++++||+++|++|.+++.+......+......+..|++.++.. ...+|+|+|+|++ +++++|+|
T Consensus 170 ~~~~~ivDSGTt~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~----~~~~P~i~f~f~~-g~~~~l~~ 244 (299)
T cd05472 170 GAGGVIIDSGTVITRLPPSAYAALRDAFRAAMAAYPRAPGFSILDTCYDLSGFR----SVSVPTVSLHFQG-GADVELDA 244 (299)
T ss_pred CCCCeEEeCCCcceecCHHHHHHHHHHHHHHhccCCCCCCCCCCCccCcCCCCc----CCccCCEEEEECC-CCEEEeCc
Confidence 246799999999999999999999999998764333222223334698765322 2479999999985 48999999
Q ss_pred cccEEEe-CCCeEEEEEEeCCCCCCCceeechhhhcceEEEEeCCCCEEEEeecCccccCCc
Q 044303 359 AHSMVRV-GKHAMCLAFVDGGVNPTTSIVIGAYQLEDNLLQFDLAKSRLGFSSSLLARQTTC 419 (428)
Q Consensus 359 ~~y~~~~-~~~~~C~~~~~~~~~~~~~~ILG~~flr~~yvvFD~e~~rIGfa~~~~~~~~~C 419 (428)
++|++.. ..+..|+++..... ..+.||||+.|||++|+|||++++|||||+ ++|
T Consensus 245 ~~y~~~~~~~~~~C~~~~~~~~-~~~~~ilG~~fl~~~~vvfD~~~~~igfa~------~~C 299 (299)
T cd05472 245 SGVLYPVDDSSQVCLAFAGTSD-DGGLSIIGNVQQQTFRVVYDVAGGRIGFAP------GGC 299 (299)
T ss_pred ccEEEEecCCCCEEEEEeCCCC-CCCCEEEchHHccceEEEEECCCCEEeEec------CCC
Confidence 9999843 34678998876532 235799999999999999999999999997 687
No 4
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-53 Score=423.63 Aligned_cols=326 Identities=34% Similarity=0.530 Sum_probs=264.7
Q ss_pred CCceEEEEEEecCCCceEEEEEecCCCceeecCCCCC--------------CCCCcccccCCCcccCCCCCCCccCCCCC
Q 044303 41 STLQYLTQIQQRTPLVPVKLTLDLGGGFLWVNCEQGF--------------VSSSYKPARCGSAQCKIAGSESCVESCLP 106 (428)
Q Consensus 41 ~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~c~--------------~S~t~~~~~c~s~~C~~~~~~~c~~~~~~ 106 (428)
..++|+++|.||||||+|+|+|||||+++||||..|. +|+||+.+.|.+..|...... |
T Consensus 43 ~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~~~-~------ 115 (398)
T KOG1339|consen 43 SSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSSACYSQHNPIFDPSASSTYKSVGCSSPRCKSLPQS-C------ 115 (398)
T ss_pred cccccEEEEecCCCCeeeEEEEeCCCCceeeccccccccccccCCCccCccccccccccCCCCccccccccC-c------
Confidence 4679999999999999999999999999999997772 588899999998888765433 2
Q ss_pred CCCCCCCCCCcceecCCCCCceeeeEEEEEEEEeecCCCCCCCcceecCceEEeccccccccCcC-CCcceEEecCCCCC
Q 044303 107 KGPGCNNNTCTHFPGNTVSHVSTFGELATDVVSIQSTDGSKPGQVVPVPNIIFACGATFLLEGLA-SGFQGMAGLGRNKV 185 (428)
Q Consensus 107 ~~~~~~~~~c~~~~~Y~~~~~~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~~fG~~~~~~~~~~~-~~~~GIlGLg~~~~ 185 (428)
+.++.|.|.+.|+ ++++++|++++|+|++++.+ .+.+++++|||+..+...... ...+||||||+.++
T Consensus 116 ----~~~~~C~y~i~Yg-d~~~~~G~l~~Dtv~~~~~~------~~~~~~~~FGc~~~~~g~~~~~~~~dGIlGLg~~~~ 184 (398)
T KOG1339|consen 116 ----SPNSSCPYSIQYG-DGSSTSGYLATDTVTFGGTT------SLPVPNQTFGCGTNNPGSFGLFAAFDGILGLGRGSL 184 (398)
T ss_pred ----ccCCcCceEEEeC-CCCceeEEEEEEEEEEcccc------ccccccEEEEeeecCccccccccccceEeecCCCCc
Confidence 2578999999996 88999999999999999842 126678999999998543111 46899999999999
Q ss_pred chHHhhhhhhccCCCcEEEecCCC-------CceEecCCCCCCCCC-CCceEeeceeCCCCCCCCCcCCCCCcceEEEEe
Q 044303 186 SLPSQLSAAAFKLDRKFSICLSSN-------GAVFFGDVSFPGIDP-KSLIYTRLIRNPVSSAGASFEGESSAEYFIGVK 257 (428)
Q Consensus 186 S~~~ql~~~~~~~~~~FS~~L~~~-------G~l~fGg~d~~~~~~-g~l~~tpl~~~~~~~~~~~~~~~~~~~y~v~l~ 257 (428)
|++.|+.. .....++||+||.+. |.|+||+.|.+ ++ +.+.|+||+.+. +.+|.|.+.
T Consensus 185 S~~~q~~~-~~~~~~~FS~cL~~~~~~~~~~G~i~fG~~d~~--~~~~~l~~tPl~~~~------------~~~y~v~l~ 249 (398)
T KOG1339|consen 185 SVPSQLPS-FYNAINVFSYCLSSNGSPSSGGGSIIFGGVDSS--HYTGSLTYTPLLSNP------------STYYQVNLD 249 (398)
T ss_pred cceeeccc-ccCCceeEEEEeCCCCCCCCCCcEEEECCCccc--CcCCceEEEeeccCC------------CccEEEEEe
Confidence 99999988 655556899999865 99999999843 33 789999999864 259999999
Q ss_pred EEEEcCeEeeccccccccccCCCCCeEEeccccceecCHHHHHHHHHHHHHhccCCCCCCCCCCCccceecCCCCCCCcC
Q 044303 258 SILISGNVVPLNKSLLSINKEGFGGTKISTVFPYTVLETSIYKAFVKTFIKSYSNIPRVKPMAPFGACFNSSFIGSTHVG 337 (428)
Q Consensus 258 ~i~v~~~~l~~~~~~~~~~~~~~~~~iiDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~ 337 (428)
+|+|+++. .++...+.. +.+++|+||||++++||+++|++|++++.+... . .......+..|+......
T Consensus 250 ~I~vgg~~-~~~~~~~~~---~~~~~iiDSGTs~t~lp~~~y~~i~~~~~~~~~-~-~~~~~~~~~~C~~~~~~~----- 318 (398)
T KOG1339|consen 250 GISVGGKR-PIGSSLFCT---DGGGAIIDSGTSLTYLPTSAYNALREAIGAEVS-V-VGTDGEYFVPCFSISTSG----- 318 (398)
T ss_pred EEEECCcc-CCCcceEec---CCCCEEEECCcceeeccHHHHHHHHHHHHhhee-c-cccCCceeeecccCCCCc-----
Confidence 99999977 555444432 147899999999999999999999999998641 0 011123456899875321
Q ss_pred CCCCeEEEEEcCCceEEEEeccccEEEeCCCeE-EEEEEeCCCCCCCceeechhhhcceEEEEeCC-CCEEEEeecC
Q 044303 338 AAAPEIHLYMPGTNRMWKIFGAHSMVRVGKHAM-CLAFVDGGVNPTTSIVIGAYQLEDNLLQFDLA-KSRLGFSSSL 412 (428)
Q Consensus 338 ~~~P~i~~~f~g~~~~~~i~~~~y~~~~~~~~~-C~~~~~~~~~~~~~~ILG~~flr~~yvvFD~e-~~rIGfa~~~ 412 (428)
..+|+|+|+|++ ++.|.+++++|++...++.. |++++...... ..||||+.|||+++++||.. ++|||||+++
T Consensus 319 ~~~P~i~~~f~~-g~~~~l~~~~y~~~~~~~~~~Cl~~~~~~~~~-~~~ilG~~~~~~~~~~~D~~~~~riGfa~~~ 393 (398)
T KOG1339|consen 319 VKLPDITFHFGG-GAVFSLPPKNYLVEVSDGGGVCLAFFNGMDSG-PLWILGDVFQQNYLVVFDLGENSRVGFAPAL 393 (398)
T ss_pred ccCCcEEEEECC-CcEEEeCccceEEEECCCCCceeeEEecCCCC-ceEEEchHHhCCEEEEEeCCCCCEEEecccc
Confidence 259999999996 59999999999998876444 99988765432 58999999999999999999 9999999854
No 5
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=2.7e-51 Score=401.08 Aligned_cols=295 Identities=21% Similarity=0.265 Sum_probs=227.1
Q ss_pred ceEEEEEEecCCCceEEEEEecCCCceeecCCCCC-------------CCCCcccccCCCcccCCCCCCCccCCCCCCCC
Q 044303 43 LQYLTQIQQRTPLVPVKLTLDLGGGFLWVNCEQGF-------------VSSSYKPARCGSAQCKIAGSESCVESCLPKGP 109 (428)
Q Consensus 43 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~c~-------------~S~t~~~~~c~s~~C~~~~~~~c~~~~~~~~~ 109 (428)
+.|+++|+||||+|++.|+|||||+++||+|..|. +|+|++.+.|.+..|.. ..
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~-------------~~ 68 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCKNCGIHMEPPYNLNNSITSSILYCDCNKCCY-------------CL 68 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCCCcCCCCCCCcCcccccccccccCCCccccc-------------cC
Confidence 58999999999999999999999999999988762 67888889998887742 12
Q ss_pred CCCCCCCcceecCCCCCceeeeEEEEEEEEeecCCCCCCCcceecCceEEeccccccccCcCCCcceEEecCCCCCc-h-
Q 044303 110 GCNNNTCTHFPGNTVSHVSTFGELATDVVSIQSTDGSKPGQVVPVPNIIFACGATFLLEGLASGFQGMAGLGRNKVS-L- 187 (428)
Q Consensus 110 ~~~~~~c~~~~~Y~~~~~~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~GIlGLg~~~~S-~- 187 (428)
+|.++.|.|.+.|+ +++.+.|.+++|+|+|++..... .+.++ .++.|||+..+.........+||||||+.+.+ .
T Consensus 69 ~~~~~~~~~~i~Y~-~gs~~~G~~~~D~v~lg~~~~~~-~~~~~-~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~ 145 (326)
T cd06096 69 SCLNNKCEYSISYS-EGSSISGFYFSDFVSFESYLNSN-SEKES-FKKIFGCHTHETNLFLTQQATGILGLSLTKNNGLP 145 (326)
T ss_pred cCCCCcCcEEEEEC-CCCceeeEEEEEEEEeccCCCCc-ccccc-ccEEeccCccccCcccccccceEEEccCCcccccC
Confidence 34567899999996 88889999999999998752110 00011 25789999876332223467999999998642 2
Q ss_pred --HHhhhhhhcc-C--CCcEEEecCCC-CceEecCCCCCCCC---------CCCceEeeceeCCCCCCCCCcCCCCCcce
Q 044303 188 --PSQLSAAAFK-L--DRKFSICLSSN-GAVFFGDVSFPGID---------PKSLIYTRLIRNPVSSAGASFEGESSAEY 252 (428)
Q Consensus 188 --~~ql~~~~~~-~--~~~FS~~L~~~-G~l~fGg~d~~~~~---------~g~l~~tpl~~~~~~~~~~~~~~~~~~~y 252 (428)
..++.+ +.. . +++||+||+++ |+|+|||+|..... .+++.|+|+.. ..+|
T Consensus 146 ~~~~~l~~-~~~~~~~~~~FS~~l~~~~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~--------------~~~y 210 (326)
T cd06096 146 TPIILLFT-KRPKLKKDKIFSICLSEDGGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITR--------------KYYY 210 (326)
T ss_pred chhHHHHH-hcccccCCceEEEEEcCCCeEEEECccChhhhcccccccccccCCceEEeccC--------------CceE
Confidence 112333 322 2 38999999988 99999999832111 16899999874 3689
Q ss_pred EEEEeEEEEcCeEeeccccccccccCCCCCeEEeccccceecCHHHHHHHHHHHHHhccCCCCCCCCCCCccceecCCCC
Q 044303 253 FIGVKSILISGNVVPLNKSLLSINKEGFGGTKISTVFPYTVLETSIYKAFVKTFIKSYSNIPRVKPMAPFGACFNSSFIG 332 (428)
Q Consensus 253 ~v~l~~i~v~~~~l~~~~~~~~~~~~~~~~~iiDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~ 332 (428)
.|.+++|+|+++...... .....+||||||++++||+++|++|.+++
T Consensus 211 ~v~l~~i~vg~~~~~~~~-------~~~~~aivDSGTs~~~lp~~~~~~l~~~~-------------------------- 257 (326)
T cd06096 211 YVKLEGLSVYGTTSNSGN-------TKGLGMLVDSGSTLSHFPEDLYNKINNFF-------------------------- 257 (326)
T ss_pred EEEEEEEEEcccccceec-------ccCCCEEEeCCCCcccCCHHHHHHHHhhc--------------------------
Confidence 999999999988611100 12467999999999999999999887654
Q ss_pred CCCcCCCCCeEEEEEcCCceEEEEeccccEEEeCCCeEEEEEEeCCCCCCCceeechhhhcceEEEEeCCCCEEEEeecC
Q 044303 333 STHVGAAAPEIHLYMPGTNRMWKIFGAHSMVRVGKHAMCLAFVDGGVNPTTSIVIGAYQLEDNLLQFDLAKSRLGFSSSL 412 (428)
Q Consensus 333 ~~~~~~~~P~i~~~f~g~~~~~~i~~~~y~~~~~~~~~C~~~~~~~~~~~~~~ILG~~flr~~yvvFD~e~~rIGfa~~~ 412 (428)
|+|+|+|++ +++++++|++|++...+..+|+++.... +.+|||++|||++|+|||++++|||||+
T Consensus 258 --------P~i~~~f~~-g~~~~i~p~~y~~~~~~~~c~~~~~~~~----~~~ILG~~flr~~y~vFD~~~~riGfa~-- 322 (326)
T cd06096 258 --------PTITIIFEN-NLKIDWKPSSYLYKKESFWCKGGEKSVS----NKPILGASFFKNKQIIFDLDNNRIGFVE-- 322 (326)
T ss_pred --------CcEEEEEcC-CcEEEECHHHhccccCCceEEEEEecCC----CceEEChHHhcCcEEEEECcCCEEeeEc--
Confidence 689999995 4999999999999765555666654432 4789999999999999999999999997
Q ss_pred ccccCCcc
Q 044303 413 LARQTTCS 420 (428)
Q Consensus 413 ~~~~~~C~ 420 (428)
++|.
T Consensus 323 ----~~C~ 326 (326)
T cd06096 323 ----SNCP 326 (326)
T ss_pred ----CCCC
Confidence 7884
No 6
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=2.9e-51 Score=399.52 Aligned_cols=302 Identities=19% Similarity=0.219 Sum_probs=236.7
Q ss_pred EEeeCCCCceEEEEEEecCCCceEEEEEecCCCceeecCCCCCCCCCcccccCCCcccCCCCCCCccCCCCCCCCCCCCC
Q 044303 35 PVTKDSSTLQYLTQIQQRTPLVPVKLTLDLGGGFLWVNCEQGFVSSSYKPARCGSAQCKIAGSESCVESCLPKGPGCNNN 114 (428)
Q Consensus 35 Pl~~~~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~c~~S~t~~~~~c~s~~C~~~~~~~c~~~~~~~~~~~~~~ 114 (428)
||.+. .+.+|+++|.||||+|++.|+|||||+++||+|..| ....|..++.+++. .++++...
T Consensus 2 ~l~n~-~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C-----------~~~~c~~~~~f~~~-----~Sst~~~~ 64 (317)
T cd05478 2 PLTNY-LDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYC-----------SSQACSNHNRFNPR-----QSSTYQST 64 (317)
T ss_pred ccccc-cCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCC-----------CcccccccCcCCCC-----CCcceeeC
Confidence 56653 488999999999999999999999999999999765 33456555555433 23344456
Q ss_pred CCcceecCCCCCceeeeEEEEEEEEeecCCCCCCCcceecCceEEeccccccccCc-CCCcceEEecCCCCC------ch
Q 044303 115 TCTHFPGNTVSHVSTFGELATDVVSIQSTDGSKPGQVVPVPNIIFACGATFLLEGL-ASGFQGMAGLGRNKV------SL 187 (428)
Q Consensus 115 ~c~~~~~Y~~~~~~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~~fG~~~~~~~~~~-~~~~~GIlGLg~~~~------S~ 187 (428)
.|.|.+.|+ +++ +.|.+++|+|++++. .++++.|||+........ ....+||||||++.. ++
T Consensus 65 ~~~~~~~yg-~gs-~~G~~~~D~v~ig~~---------~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~ 133 (317)
T cd05478 65 GQPLSIQYG-TGS-MTGILGYDTVQVGGI---------SDTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGATPV 133 (317)
T ss_pred CcEEEEEEC-Cce-EEEEEeeeEEEECCE---------EECCEEEEEEEecCccccccccccceeeeccchhcccCCCCH
Confidence 789999995 555 899999999999875 788999999976532211 134799999998754 47
Q ss_pred HHhhhhhhccC-CCcEEEecCCC----CceEecCCCCCCCCC-CCceEeeceeCCCCCCCCCcCCCCCcceEEEEeEEEE
Q 044303 188 PSQLSAAAFKL-DRKFSICLSSN----GAVFFGDVSFPGIDP-KSLIYTRLIRNPVSSAGASFEGESSAEYFIGVKSILI 261 (428)
Q Consensus 188 ~~ql~~~~~~~-~~~FS~~L~~~----G~l~fGg~d~~~~~~-g~l~~tpl~~~~~~~~~~~~~~~~~~~y~v~l~~i~v 261 (428)
..+|++ ++.+ +++||+||.++ |+|+|||+|. .++ |++.|+|+.. +.+|.|.+++|+|
T Consensus 134 ~~~L~~-~g~i~~~~FS~~L~~~~~~~g~l~~Gg~d~--~~~~g~l~~~p~~~--------------~~~w~v~l~~v~v 196 (317)
T cd05478 134 FDNMMS-QGLVSQDLFSVYLSSNGQQGSVVTFGGIDP--SYYTGSLNWVPVTA--------------ETYWQITVDSVTI 196 (317)
T ss_pred HHHHHh-CCCCCCCEEEEEeCCCCCCCeEEEEcccCH--HHccCceEEEECCC--------------CcEEEEEeeEEEE
Confidence 788988 8777 58999999985 8999999983 234 8999999963 4699999999999
Q ss_pred cCeEeeccccccccccCCCCCeEEeccccceecCHHHHHHHHHHHHHhccCCCCCCCCCCCccceecCCCCCCCcCCCCC
Q 044303 262 SGNVVPLNKSLLSINKEGFGGTKISTVFPYTVLETSIYKAFVKTFIKSYSNIPRVKPMAPFGACFNSSFIGSTHVGAAAP 341 (428)
Q Consensus 262 ~~~~l~~~~~~~~~~~~~~~~~iiDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P 341 (428)
+++.+.... +..+||||||++++||+++|++|.+++..... . ......+|+.. ..+|
T Consensus 197 ~g~~~~~~~---------~~~~iiDTGts~~~lp~~~~~~l~~~~~~~~~---~--~~~~~~~C~~~---------~~~P 253 (317)
T cd05478 197 NGQVVACSG---------GCQAIVDTGTSLLVGPSSDIANIQSDIGASQN---Q--NGEMVVNCSSI---------SSMP 253 (317)
T ss_pred CCEEEccCC---------CCEEEECCCchhhhCCHHHHHHHHHHhCCccc---c--CCcEEeCCcCc---------ccCC
Confidence 999875421 35799999999999999999999998854321 1 11122367654 3689
Q ss_pred eEEEEEcCCceEEEEeccccEEEeCCCeEEEE-EEeCCCCCCCceeechhhhcceEEEEeCCCCEEEEee
Q 044303 342 EIHLYMPGTNRMWKIFGAHSMVRVGKHAMCLA-FVDGGVNPTTSIVIGAYQLEDNLLQFDLAKSRLGFSS 410 (428)
Q Consensus 342 ~i~~~f~g~~~~~~i~~~~y~~~~~~~~~C~~-~~~~~~~~~~~~ILG~~flr~~yvvFD~e~~rIGfa~ 410 (428)
.|+|+|+| ++++|||++|+... +..|+. +..... .+.||||+.|||++|+|||++++|||||+
T Consensus 254 ~~~f~f~g--~~~~i~~~~y~~~~--~~~C~~~~~~~~~--~~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 254 DVVFTING--VQYPLPPSAYILQD--QGSCTSGFQSMGL--GELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred cEEEEECC--EEEEECHHHheecC--CCEEeEEEEeCCC--CCeEEechHHhcceEEEEeCCCCEEeecC
Confidence 99999976 89999999999865 568985 444332 35799999999999999999999999995
No 7
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=3.3e-51 Score=400.62 Aligned_cols=303 Identities=19% Similarity=0.271 Sum_probs=232.7
Q ss_pred CCceEEEEEEecCCCceEEEEEecCCCceeecCCCCCCCCCcccccCCCcccCCCCCCCccCCCCCCCCCCCCCCCccee
Q 044303 41 STLQYLTQIQQRTPLVPVKLTLDLGGGFLWVNCEQGFVSSSYKPARCGSAQCKIAGSESCVESCLPKGPGCNNNTCTHFP 120 (428)
Q Consensus 41 ~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~c~~S~t~~~~~c~s~~C~~~~~~~c~~~~~~~~~~~~~~~c~~~~ 120 (428)
.+.+|+++|.||||+|++.|+|||||+++||+|..|.. | +..|..+..+++. .++++....|.|.+
T Consensus 3 ~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~--------~-~~~C~~~~~y~~~-----~SsT~~~~~~~~~i 68 (325)
T cd05490 3 MDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSL--------L-DIACWLHHKYNSS-----KSSTYVKNGTEFAI 68 (325)
T ss_pred cCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCC--------C-CccccCcCcCCcc-----cCcceeeCCcEEEE
Confidence 46899999999999999999999999999999987731 1 2346555555543 23344456789999
Q ss_pred cCCCCCceeeeEEEEEEEEeecCCCCCCCcceecCceEEeccccccccCc-CCCcceEEecCCCCCc------hHHhhhh
Q 044303 121 GNTVSHVSTFGELATDVVSIQSTDGSKPGQVVPVPNIIFACGATFLLEGL-ASGFQGMAGLGRNKVS------LPSQLSA 193 (428)
Q Consensus 121 ~Y~~~~~~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~~fG~~~~~~~~~~-~~~~~GIlGLg~~~~S------~~~ql~~ 193 (428)
.|+ +| ++.|.+++|+|+|++. +++++.|||++......+ ....+||||||++..+ +..+|.+
T Consensus 69 ~Yg-~G-~~~G~~~~D~v~~g~~---------~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~ 137 (325)
T cd05490 69 QYG-SG-SLSGYLSQDTVSIGGL---------QVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVTPVFDNIMA 137 (325)
T ss_pred EEC-Cc-EEEEEEeeeEEEECCE---------EEcCEEEEEEeeccCCcccceeeeEEEecCCccccccCCCCHHHHHHh
Confidence 995 65 5899999999999875 788999999987632211 2357999999987654 4567777
Q ss_pred hhccC-CCcEEEecCCC------CceEecCCCCCCCCC-CCceEeeceeCCCCCCCCCcCCCCCcceEEEEeEEEEcCeE
Q 044303 194 AAFKL-DRKFSICLSSN------GAVFFGDVSFPGIDP-KSLIYTRLIRNPVSSAGASFEGESSAEYFIGVKSILISGNV 265 (428)
Q Consensus 194 ~~~~~-~~~FS~~L~~~------G~l~fGg~d~~~~~~-g~l~~tpl~~~~~~~~~~~~~~~~~~~y~v~l~~i~v~~~~ 265 (428)
++.+ +++||+||.++ |+|+|||+|. .++ +++.|+|+.. ..+|.|++++|+|+++.
T Consensus 138 -~g~i~~~~FS~~L~~~~~~~~~G~l~~Gg~d~--~~~~g~l~~~~~~~--------------~~~w~v~l~~i~vg~~~ 200 (325)
T cd05490 138 -QKLVEQNVFSFYLNRDPDAQPGGELMLGGTDP--KYYTGDLHYVNVTR--------------KAYWQIHMDQVDVGSGL 200 (325)
T ss_pred -cCCCCCCEEEEEEeCCCCCCCCCEEEECccCH--HHcCCceEEEEcCc--------------ceEEEEEeeEEEECCee
Confidence 7666 68899999753 9999999983 234 8999999864 46999999999999864
Q ss_pred eeccccccccccCCCCCeEEeccccceecCHHHHHHHHHHHHHhccCCCCCCCCCCCccceecCCCCCCCcCCCCCeEEE
Q 044303 266 VPLNKSLLSINKEGFGGTKISTVFPYTVLETSIYKAFVKTFIKSYSNIPRVKPMAPFGACFNSSFIGSTHVGAAAPEIHL 345 (428)
Q Consensus 266 l~~~~~~~~~~~~~~~~~iiDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~~ 345 (428)
.... ....+||||||+++++|++++++|.+++.+. +.... ....+|+.. ..+|+|+|
T Consensus 201 ~~~~---------~~~~aiiDSGTt~~~~p~~~~~~l~~~~~~~----~~~~~-~~~~~C~~~---------~~~P~i~f 257 (325)
T cd05490 201 TLCK---------GGCEAIVDTGTSLITGPVEEVRALQKAIGAV----PLIQG-EYMIDCEKI---------PTLPVISF 257 (325)
T ss_pred eecC---------CCCEEEECCCCccccCCHHHHHHHHHHhCCc----cccCC-CEEeccccc---------ccCCCEEE
Confidence 3211 1357999999999999999999999888532 11111 223567754 36899999
Q ss_pred EEcCCceEEEEeccccEEEeCC--CeEEEE-EEeCCC--CCCCceeechhhhcceEEEEeCCCCEEEEee
Q 044303 346 YMPGTNRMWKIFGAHSMVRVGK--HAMCLA-FVDGGV--NPTTSIVIGAYQLEDNLLQFDLAKSRLGFSS 410 (428)
Q Consensus 346 ~f~g~~~~~~i~~~~y~~~~~~--~~~C~~-~~~~~~--~~~~~~ILG~~flr~~yvvFD~e~~rIGfa~ 410 (428)
+|+| ..++|+|++|+++... ...|+. +..... ...+.||||+.|||++|+|||++++|||||+
T Consensus 258 ~fgg--~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 258 SLGG--KVYPLTGEDYILKVSQRGTTICLSGFMGLDIPPPAGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred EECC--EEEEEChHHeEEeccCCCCCEEeeEEEECCCCCCCCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 9987 8999999999987543 357984 544321 1245799999999999999999999999995
No 8
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=7.5e-51 Score=412.10 Aligned_cols=310 Identities=17% Similarity=0.224 Sum_probs=236.6
Q ss_pred eEEEEeeCCCCceEEEEEEecCCCceEEEEEecCCCceeecCCCCCCCCCcccccCCCcccCCCCCCCccCCCCCCCCCC
Q 044303 32 LVVPVTKDSSTLQYLTQIQQRTPLVPVKLTLDLGGGFLWVNCEQGFVSSSYKPARCGSAQCKIAGSESCVESCLPKGPGC 111 (428)
Q Consensus 32 ~~~Pl~~~~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~c~~S~t~~~~~c~s~~C~~~~~~~c~~~~~~~~~~~ 111 (428)
+..||.+. .+.+|+++|+||||||+|.|+|||||+++||||..| .+..|..+..+++.. ..++...+
T Consensus 109 ~~~~l~n~-~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~~C-----------~~~~C~~~~~yd~s~-SSTy~~~~ 175 (482)
T PTZ00165 109 LQQDLLNF-HNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSKEC-----------KSGGCAPHRKFDPKK-SSTYTKLK 175 (482)
T ss_pred cceecccc-cCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEchhc-----------CcccccccCCCCccc-cCCcEecC
Confidence 45666653 688999999999999999999999999999999755 444676666666541 11221111
Q ss_pred CCC-CCcceecCCCCCceeeeEEEEEEEEeecCCCCCCCcceecCceEEeccccccccCc-CCCcceEEecCCCCC----
Q 044303 112 NNN-TCTHFPGNTVSHVSTFGELATDVVSIQSTDGSKPGQVVPVPNIIFACGATFLLEGL-ASGFQGMAGLGRNKV---- 185 (428)
Q Consensus 112 ~~~-~c~~~~~Y~~~~~~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~~fG~~~~~~~~~~-~~~~~GIlGLg~~~~---- 185 (428)
.+. ...+.+.|+ .+++.|.+++|+|++++. +++++.|||++......+ ....|||||||++..
T Consensus 176 ~~~~~~~~~i~YG--sGs~~G~l~~DtV~ig~l---------~i~~q~FG~a~~~s~~~f~~~~~DGILGLg~~~~s~~s 244 (482)
T PTZ00165 176 LGDESAETYIQYG--TGECVLALGKDTVKIGGL---------KVKHQSIGLAIEESLHPFADLPFDGLVGLGFPDKDFKE 244 (482)
T ss_pred CCCccceEEEEeC--CCcEEEEEEEEEEEECCE---------EEccEEEEEEEeccccccccccccceeecCCCcccccc
Confidence 111 125778994 456789999999999875 789999999987632222 246899999998764
Q ss_pred -----chHHhhhhhhccC-CCcEEEecCCC----CceEecCCCCCCCC-C-CCceEeeceeCCCCCCCCCcCCCCCcceE
Q 044303 186 -----SLPSQLSAAAFKL-DRKFSICLSSN----GAVFFGDVSFPGID-P-KSLIYTRLIRNPVSSAGASFEGESSAEYF 253 (428)
Q Consensus 186 -----S~~~ql~~~~~~~-~~~FS~~L~~~----G~l~fGg~d~~~~~-~-g~l~~tpl~~~~~~~~~~~~~~~~~~~y~ 253 (428)
++..+|.+ ++.+ +++||+||+++ |+|+|||+| ++.. . +++.|+|+.. ..+|+
T Consensus 245 ~~~~~p~~~~l~~-qgli~~~~FS~yL~~~~~~~G~l~fGGiD-~~~~~~~g~i~~~Pv~~--------------~~yW~ 308 (482)
T PTZ00165 245 SKKALPIVDNIKK-QNLLKRNIFSFYMSKDLNQPGSISFGSAD-PKYTLEGHKIWWFPVIS--------------TDYWE 308 (482)
T ss_pred cCCCCCHHHHHHH-cCCcccceEEEEeccCCCCCCEEEeCCcC-HHHcCCCCceEEEEccc--------------cceEE
Confidence 35667887 7776 68999999864 999999998 3211 1 6899999974 46999
Q ss_pred EEEeEEEEcCeEeeccccccccccCCCCCeEEeccccceecCHHHHHHHHHHHHHhccCCCCCCCCCCCccceecCCCCC
Q 044303 254 IGVKSILISGNVVPLNKSLLSINKEGFGGTKISTVFPYTVLETSIYKAFVKTFIKSYSNIPRVKPMAPFGACFNSSFIGS 333 (428)
Q Consensus 254 v~l~~i~v~~~~l~~~~~~~~~~~~~~~~~iiDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~ 333 (428)
|.+++|+|+++.+.... +...+|+||||+++++|++++++|.+++... .+|...
T Consensus 309 i~l~~i~vgg~~~~~~~--------~~~~aIiDTGTSli~lP~~~~~~i~~~i~~~-------------~~C~~~----- 362 (482)
T PTZ00165 309 IEVVDILIDGKSLGFCD--------RKCKAAIDTGSSLITGPSSVINPLLEKIPLE-------------EDCSNK----- 362 (482)
T ss_pred EEeCeEEECCEEeeecC--------CceEEEEcCCCccEeCCHHHHHHHHHHcCCc-------------cccccc-----
Confidence 99999999998776431 1357999999999999999999998877421 258764
Q ss_pred CCcCCCCCeEEEEEcCC---ceEEEEeccccEEEe----CCCeEEE-EEEeCCC--CCCCceeechhhhcceEEEEeCCC
Q 044303 334 THVGAAAPEIHLYMPGT---NRMWKIFGAHSMVRV----GKHAMCL-AFVDGGV--NPTTSIVIGAYQLEDNLLQFDLAK 403 (428)
Q Consensus 334 ~~~~~~~P~i~~~f~g~---~~~~~i~~~~y~~~~----~~~~~C~-~~~~~~~--~~~~~~ILG~~flr~~yvvFD~e~ 403 (428)
..+|+|+|+|++. .++++++|++|+++. ..+..|+ ++...+. ..++.||||++|||+||+|||.++
T Consensus 363 ----~~lP~itf~f~g~~g~~v~~~l~p~dYi~~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd~Flr~yy~VFD~~n 438 (482)
T PTZ00165 363 ----DSLPRISFVLEDVNGRKIKFDMDPEDYVIEEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGNNFIRKYYSIFDRDH 438 (482)
T ss_pred ----ccCCceEEEECCCCCceEEEEEchHHeeeecccCCCCCCeEEEEEEECCCCCCCCceEEEchhhheeEEEEEeCCC
Confidence 3689999999861 258999999999974 2346897 6665432 124679999999999999999999
Q ss_pred CEEEEeec
Q 044303 404 SRLGFSSS 411 (428)
Q Consensus 404 ~rIGfa~~ 411 (428)
+|||||++
T Consensus 439 ~rIGfA~a 446 (482)
T PTZ00165 439 MMVGLVPA 446 (482)
T ss_pred CEEEEEee
Confidence 99999984
No 9
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=6.8e-51 Score=396.73 Aligned_cols=296 Identities=18% Similarity=0.193 Sum_probs=229.8
Q ss_pred EEEEEEecCCCceEEEEEecCCCceeecCCCCCCCCCcccccCCCcccCCCCCCCccCCCCCCCCCCCCCCCcceecCCC
Q 044303 45 YLTQIQQRTPLVPVKLTLDLGGGFLWVNCEQGFVSSSYKPARCGSAQCKIAGSESCVESCLPKGPGCNNNTCTHFPGNTV 124 (428)
Q Consensus 45 Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~c~~S~t~~~~~c~s~~C~~~~~~~c~~~~~~~~~~~~~~~c~~~~~Y~~ 124 (428)
|+++|+||||+|+++|+|||||+++||+|..| .+..|..+..+++. .++++....|.|.+.|+
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C-----------~~~~C~~~~~y~~~-----~SsT~~~~~~~~~i~Yg- 63 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYC-----------TSQACTKHNRFQPS-----ESSTYVSNGEAFSIQYG- 63 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCC-----------CCcccCccceECCC-----CCcccccCCcEEEEEeC-
Confidence 89999999999999999999999999998755 33456655555543 23345567899999995
Q ss_pred CCceeeeEEEEEEEEeecCCCCCCCcceecCceEEeccccccccCc-CCCcceEEecCCCCCc------hHHhhhhhhcc
Q 044303 125 SHVSTFGELATDVVSIQSTDGSKPGQVVPVPNIIFACGATFLLEGL-ASGFQGMAGLGRNKVS------LPSQLSAAAFK 197 (428)
Q Consensus 125 ~~~~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~~fG~~~~~~~~~~-~~~~~GIlGLg~~~~S------~~~ql~~~~~~ 197 (428)
++ ++.|.+++|+|++++. +++++.|||+..+....+ ....+||||||++..+ +..+|.+ ++.
T Consensus 64 ~g-~~~G~~~~D~v~ig~~---------~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~-qg~ 132 (316)
T cd05486 64 TG-SLTGIIGIDQVTVEGI---------TVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMMA-QNL 132 (316)
T ss_pred Cc-EEEEEeeecEEEECCE---------EEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHHHHh-cCC
Confidence 55 6899999999999875 788999999876532212 2367999999987654 4667777 776
Q ss_pred C-CCcEEEecCCC------CceEecCCCCCCCCC-CCceEeeceeCCCCCCCCCcCCCCCcceEEEEeEEEEcCeEeecc
Q 044303 198 L-DRKFSICLSSN------GAVFFGDVSFPGIDP-KSLIYTRLIRNPVSSAGASFEGESSAEYFIGVKSILISGNVVPLN 269 (428)
Q Consensus 198 ~-~~~FS~~L~~~------G~l~fGg~d~~~~~~-g~l~~tpl~~~~~~~~~~~~~~~~~~~y~v~l~~i~v~~~~l~~~ 269 (428)
+ +++||+||.++ |+|+|||+|. .++ |++.|+|+.. ..+|.|++++|+|+++.+...
T Consensus 133 i~~~~FS~~L~~~~~~~~~g~l~fGg~d~--~~~~g~l~~~pi~~--------------~~~w~v~l~~i~v~g~~~~~~ 196 (316)
T cd05486 133 VELPMFSVYMSRNPNSADGGELVFGGFDT--SRFSGQLNWVPVTV--------------QGYWQIQLDNIQVGGTVIFCS 196 (316)
T ss_pred CCCCEEEEEEccCCCCCCCcEEEEcccCH--HHcccceEEEECCC--------------ceEEEEEeeEEEEecceEecC
Confidence 6 57899999853 9999999983 244 8999999864 469999999999999876432
Q ss_pred ccccccccCCCCCeEEeccccceecCHHHHHHHHHHHHHhccCCCCCCCCCCCccceecCCCCCCCcCCCCCeEEEEEcC
Q 044303 270 KSLLSINKEGFGGTKISTVFPYTVLETSIYKAFVKTFIKSYSNIPRVKPMAPFGACFNSSFIGSTHVGAAAPEIHLYMPG 349 (428)
Q Consensus 270 ~~~~~~~~~~~~~~iiDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~~~f~g 349 (428)
. ...+||||||+++++|++++++|.+++.+.. ... ....+|... ..+|+|+|+|+|
T Consensus 197 ~---------~~~aiiDTGTs~~~lP~~~~~~l~~~~~~~~-----~~~-~~~~~C~~~---------~~~p~i~f~f~g 252 (316)
T cd05486 197 D---------GCQAIVDTGTSLITGPSGDIKQLQNYIGATA-----TDG-EYGVDCSTL---------SLMPSVTFTING 252 (316)
T ss_pred C---------CCEEEECCCcchhhcCHHHHHHHHHHhCCcc-----cCC-cEEEecccc---------ccCCCEEEEECC
Confidence 1 3579999999999999999999988774321 111 122367643 368999999987
Q ss_pred CceEEEEeccccEEEeC--CCeEEE-EEEeCCC--CCCCceeechhhhcceEEEEeCCCCEEEEee
Q 044303 350 TNRMWKIFGAHSMVRVG--KHAMCL-AFVDGGV--NPTTSIVIGAYQLEDNLLQFDLAKSRLGFSS 410 (428)
Q Consensus 350 ~~~~~~i~~~~y~~~~~--~~~~C~-~~~~~~~--~~~~~~ILG~~flr~~yvvFD~e~~rIGfa~ 410 (428)
+.++|+|++|++... .+..|+ ++..... ...+.||||+.|||++|+|||.+++|||||+
T Consensus 253 --~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 253 --IPYSLSPQAYTLEDQSDGGGYCSSGFQGLDIPPPAGPLWILGDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred --EEEEeCHHHeEEecccCCCCEEeeEEEECCCCCCCCCeEEEchHHhcceEEEEeCCCCEeeccC
Confidence 999999999998752 346898 4544321 1245799999999999999999999999995
No 10
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=2.1e-50 Score=385.12 Aligned_cols=266 Identities=27% Similarity=0.456 Sum_probs=215.6
Q ss_pred ceEEEEEEecCCCceEEEEEecCCCceeecCCCCCCCCCcccccCCCcccCCCCCCCccCCCCCCCCCCCCCCCcceecC
Q 044303 43 LQYLTQIQQRTPLVPVKLTLDLGGGFLWVNCEQGFVSSSYKPARCGSAQCKIAGSESCVESCLPKGPGCNNNTCTHFPGN 122 (428)
Q Consensus 43 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~c~~S~t~~~~~c~s~~C~~~~~~~c~~~~~~~~~~~~~~~c~~~~~Y 122 (428)
++|+++|.||||||++.|+|||||+++||+|+. .|. .| .|.|.+.|
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~----------~c~--~c----------------------~c~~~i~Y 46 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDA----------PCT--GC----------------------QCDYEIEY 46 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCC----------CCC--CC----------------------cCccEeEe
Confidence 479999999999999999999999999999841 121 11 36799999
Q ss_pred CCCCceeeeEEEEEEEEeecCCCCCCCcceecCceEEeccccccccC--cCCCcceEEecCCCCCchHHhhhhhhccCCC
Q 044303 123 TVSHVSTFGELATDVVSIQSTDGSKPGQVVPVPNIIFACGATFLLEG--LASGFQGMAGLGRNKVSLPSQLSAAAFKLDR 200 (428)
Q Consensus 123 ~~~~~~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~~fG~~~~~~~~~--~~~~~~GIlGLg~~~~S~~~ql~~~~~~~~~ 200 (428)
+ +++.++|.+++|+|+++..++. ..++++.|||+..+.... .....+||||||+++.+++.||.. ++.+++
T Consensus 47 g-d~~~~~G~~~~D~v~~~~~~~~-----~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~~-~~~i~~ 119 (273)
T cd05475 47 A-DGGSSMGVLVTDIFSLKLTNGS-----RAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKISLPSQLAS-QGIIKN 119 (273)
T ss_pred C-CCCceEEEEEEEEEEEeecCCC-----cccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCCHHHHHHh-cCCcCc
Confidence 6 8999999999999999764321 256789999997653221 224689999999999999999998 776788
Q ss_pred cEEEecCCC--CceEecCCCCCCCCCCCceEeeceeCCCCCCCCCcCCCCCcceEEEEeEEEEcCeEeeccccccccccC
Q 044303 201 KFSICLSSN--GAVFFGDVSFPGIDPKSLIYTRLIRNPVSSAGASFEGESSAEYFIGVKSILISGNVVPLNKSLLSINKE 278 (428)
Q Consensus 201 ~FS~~L~~~--G~l~fGg~d~~~~~~g~l~~tpl~~~~~~~~~~~~~~~~~~~y~v~l~~i~v~~~~l~~~~~~~~~~~~ 278 (428)
+||+||++. |.|+||+...+ .+++.|+|+..++ ...+|.|++.+|+|+++.+..
T Consensus 120 ~Fs~~l~~~~~g~l~~G~~~~~---~g~i~ytpl~~~~-----------~~~~y~v~l~~i~vg~~~~~~---------- 175 (273)
T cd05475 120 VIGHCLSSNGGGFLFFGDDLVP---SSGVTWTPMRRES-----------QKKHYSPGPASLLFNGQPTGG---------- 175 (273)
T ss_pred eEEEEccCCCCeEEEECCCCCC---CCCeeecccccCC-----------CCCeEEEeEeEEEECCEECcC----------
Confidence 999999976 89999964322 1789999998653 146999999999999985321
Q ss_pred CCCCeEEeccccceecCHHHHHHHHHHHHHhccCCCCCCCCCCCccceecCCCCCCCcCCCCCeEEEEEcCC--ceEEEE
Q 044303 279 GFGGTKISTVFPYTVLETSIYKAFVKTFIKSYSNIPRVKPMAPFGACFNSSFIGSTHVGAAAPEIHLYMPGT--NRMWKI 356 (428)
Q Consensus 279 ~~~~~iiDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~~~f~g~--~~~~~i 356 (428)
+...+||||||++++||+++| +|+|+|+|++. +++++|
T Consensus 176 ~~~~~ivDTGTt~t~lp~~~y----------------------------------------~p~i~~~f~~~~~~~~~~l 215 (273)
T cd05475 176 KGLEVVFDSGSSYTYFNAQAY----------------------------------------FKPLTLKFGKGWRTRLLEI 215 (273)
T ss_pred CCceEEEECCCceEEcCCccc----------------------------------------cccEEEEECCCCceeEEEe
Confidence 245799999999999998765 37899999872 279999
Q ss_pred eccccEEEeCCCeEEEEEEeCCCC-CCCceeechhhhcceEEEEeCCCCEEEEeecCccccCCc
Q 044303 357 FGAHSMVRVGKHAMCLAFVDGGVN-PTTSIVIGAYQLEDNLLQFDLAKSRLGFSSSLLARQTTC 419 (428)
Q Consensus 357 ~~~~y~~~~~~~~~C~~~~~~~~~-~~~~~ILG~~flr~~yvvFD~e~~rIGfa~~~~~~~~~C 419 (428)
+|++|++...++..|++++..... ..+.||||+.|||++|+|||++++|||||+ ++|
T Consensus 216 ~~~~y~~~~~~~~~Cl~~~~~~~~~~~~~~ilG~~~l~~~~~vfD~~~~riGfa~------~~C 273 (273)
T cd05475 216 PPENYLIISEKGNVCLGILNGSEIGLGNTNIIGDISMQGLMVIYDNEKQQIGWVR------SDC 273 (273)
T ss_pred CCCceEEEcCCCCEEEEEecCCCcCCCceEEECceEEEeeEEEEECcCCEeCccc------CCC
Confidence 999999876666799988865431 235799999999999999999999999998 677
No 11
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=3.2e-50 Score=391.94 Aligned_cols=296 Identities=20% Similarity=0.282 Sum_probs=228.6
Q ss_pred EEeeCCCCceEEEEEEecCCCceEEEEEecCCCceeecCCCCCCCCCcccccCCCcccCCCCCCCccCCCCCCCCCCCCC
Q 044303 35 PVTKDSSTLQYLTQIQQRTPLVPVKLTLDLGGGFLWVNCEQGFVSSSYKPARCGSAQCKIAGSESCVESCLPKGPGCNNN 114 (428)
Q Consensus 35 Pl~~~~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~c~~S~t~~~~~c~s~~C~~~~~~~c~~~~~~~~~~~~~~ 114 (428)
||.+ ..+.+|+++|.||||+|++.|+|||||+++||+|..|.. +..|..+..+++. .++++...
T Consensus 2 ~l~n-~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~----------~~~C~~~~~y~~~-----~SsT~~~~ 65 (317)
T cd06098 2 ALKN-YLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYF----------SIACYFHSKYKSS-----KSSTYKKN 65 (317)
T ss_pred cccc-cCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCC----------CccccccCcCCcc-----cCCCcccC
Confidence 5554 357899999999999999999999999999999987631 2346555555544 23344455
Q ss_pred CCcceecCCCCCceeeeEEEEEEEEeecCCCCCCCcceecCceEEecccccccc-CcCCCcceEEecCCCCCc------h
Q 044303 115 TCTHFPGNTVSHVSTFGELATDVVSIQSTDGSKPGQVVPVPNIIFACGATFLLE-GLASGFQGMAGLGRNKVS------L 187 (428)
Q Consensus 115 ~c~~~~~Y~~~~~~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~~fG~~~~~~~~-~~~~~~~GIlGLg~~~~S------~ 187 (428)
.+.+.+.|+ +| ++.|.+++|+|++++. +++++.|||++..... ......+||||||++..+ +
T Consensus 66 ~~~~~i~Yg-~G-~~~G~~~~D~v~ig~~---------~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~ 134 (317)
T cd06098 66 GTSASIQYG-TG-SISGFFSQDSVTVGDL---------VVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKAVPV 134 (317)
T ss_pred CCEEEEEcC-Cc-eEEEEEEeeEEEECCE---------EECCEEEEEEEecCCccccccccceeccccccchhhcCCCCH
Confidence 678899995 44 5899999999999875 7889999999865221 122467999999987654 4
Q ss_pred HHhhhhhhccC-CCcEEEecCCC------CceEecCCCCCCCCC-CCceEeeceeCCCCCCCCCcCCCCCcceEEEEeEE
Q 044303 188 PSQLSAAAFKL-DRKFSICLSSN------GAVFFGDVSFPGIDP-KSLIYTRLIRNPVSSAGASFEGESSAEYFIGVKSI 259 (428)
Q Consensus 188 ~~ql~~~~~~~-~~~FS~~L~~~------G~l~fGg~d~~~~~~-g~l~~tpl~~~~~~~~~~~~~~~~~~~y~v~l~~i 259 (428)
..+|.+ ++.+ +++||+||.++ |+|+|||+|. .++ |++.|+|+.. ..+|.|.+++|
T Consensus 135 ~~~l~~-qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~--~~~~g~l~~~pv~~--------------~~~w~v~l~~i 197 (317)
T cd06098 135 WYNMVE-QGLVKEPVFSFWLNRNPDEEEGGELVFGGVDP--KHFKGEHTYVPVTR--------------KGYWQFEMGDV 197 (317)
T ss_pred HHHHHh-cCCCCCCEEEEEEecCCCCCCCcEEEECccCh--hhcccceEEEecCc--------------CcEEEEEeCeE
Confidence 456777 7666 57899999752 9999999983 245 8999999964 36899999999
Q ss_pred EEcCeEeeccccccccccCCCCCeEEeccccceecCHHHHHHHHHHHHHhccCCCCCCCCCCCccceecCCCCCCCcCCC
Q 044303 260 LISGNVVPLNKSLLSINKEGFGGTKISTVFPYTVLETSIYKAFVKTFIKSYSNIPRVKPMAPFGACFNSSFIGSTHVGAA 339 (428)
Q Consensus 260 ~v~~~~l~~~~~~~~~~~~~~~~~iiDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~ 339 (428)
+|+++.+.... ....+||||||+++++|+++++++. ...+|+.. ..
T Consensus 198 ~v~g~~~~~~~--------~~~~aivDTGTs~~~lP~~~~~~i~-----------------~~~~C~~~---------~~ 243 (317)
T cd06098 198 LIGGKSTGFCA--------GGCAAIADSGTSLLAGPTTIVTQIN-----------------SAVDCNSL---------SS 243 (317)
T ss_pred EECCEEeeecC--------CCcEEEEecCCcceeCCHHHHHhhh-----------------ccCCcccc---------cc
Confidence 99998865432 1356999999999999998766542 12468764 26
Q ss_pred CCeEEEEEcCCceEEEEeccccEEEeCC--CeEEEE-EEeCCC--CCCCceeechhhhcceEEEEeCCCCEEEEee
Q 044303 340 APEIHLYMPGTNRMWKIFGAHSMVRVGK--HAMCLA-FVDGGV--NPTTSIVIGAYQLEDNLLQFDLAKSRLGFSS 410 (428)
Q Consensus 340 ~P~i~~~f~g~~~~~~i~~~~y~~~~~~--~~~C~~-~~~~~~--~~~~~~ILG~~flr~~yvvFD~e~~rIGfa~ 410 (428)
+|+|+|+|+| ..++|+|++|+++..+ ...|++ +..... ...+.||||+.|||++|+|||++++|||||+
T Consensus 244 ~P~i~f~f~g--~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 244 MPNVSFTIGG--KTFELTPEQYILKVGEGAAAQCISGFTALDVPPPRGPLWILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred CCcEEEEECC--EEEEEChHHeEEeecCCCCCEEeceEEECCCCCCCCCeEEechHHhcccEEEEeCCCCEEeecC
Confidence 8999999977 9999999999987643 358984 543321 1235799999999999999999999999995
No 12
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=3.5e-50 Score=382.09 Aligned_cols=258 Identities=32% Similarity=0.596 Sum_probs=217.3
Q ss_pred eEEEEEEecCCCceEEEEEecCCCceeecCCCCCCCCCcccccCCCcccCCCCCCCccCCCCCCCCCCCCCCCcceecCC
Q 044303 44 QYLTQIQQRTPLVPVKLTLDLGGGFLWVNCEQGFVSSSYKPARCGSAQCKIAGSESCVESCLPKGPGCNNNTCTHFPGNT 123 (428)
Q Consensus 44 ~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~c~~S~t~~~~~c~s~~C~~~~~~~c~~~~~~~~~~~~~~~c~~~~~Y~ 123 (428)
+|+++|+||||+|++.|+|||||+++||+| |.|.+.|+
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~------------------------------------------~~~~~~Y~ 38 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC------------------------------------------CSYEYSYG 38 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC------------------------------------------CceEeEeC
Confidence 599999999999999999999999999985 23778895
Q ss_pred CCCceeeeEEEEEEEEeecCCCCCCCcceecCceEEeccccccccCcCCCcceEEecCCCCCchHHhhhhhhccCCCcEE
Q 044303 124 VSHVSTFGELATDVVSIQSTDGSKPGQVVPVPNIIFACGATFLLEGLASGFQGMAGLGRNKVSLPSQLSAAAFKLDRKFS 203 (428)
Q Consensus 124 ~~~~~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~GIlGLg~~~~S~~~ql~~~~~~~~~~FS 203 (428)
+++.++|++++|+|+|++.+ ++++++.|||+..... ......+||||||++..|++.||.. ++ ++||
T Consensus 39 -dg~~~~G~~~~D~v~~g~~~-------~~~~~~~Fg~~~~~~~-~~~~~~~GIlGLg~~~~s~~~ql~~-~~---~~Fs 105 (265)
T cd05476 39 -DGSSTSGVLATETFTFGDSS-------VSVPNVAFGCGTDNEG-GSFGGADGILGLGRGPLSLVSQLGS-TG---NKFS 105 (265)
T ss_pred -CCceeeeeEEEEEEEecCCC-------CccCCEEEEecccccC-CccCCCCEEEECCCCcccHHHHhhc-cc---CeeE
Confidence 89999999999999998752 2568899999998743 3345689999999999999999987 55 7999
Q ss_pred EecCC----C--CceEecCCCCCCCCC-CCceEeeceeCCCCCCCCCcCCCCCcceEEEEeEEEEcCeEeeccccccccc
Q 044303 204 ICLSS----N--GAVFFGDVSFPGIDP-KSLIYTRLIRNPVSSAGASFEGESSAEYFIGVKSILISGNVVPLNKSLLSIN 276 (428)
Q Consensus 204 ~~L~~----~--G~l~fGg~d~~~~~~-g~l~~tpl~~~~~~~~~~~~~~~~~~~y~v~l~~i~v~~~~l~~~~~~~~~~ 276 (428)
+||.+ . |+|+||++|.. + +++.|+|++.++. ...+|.|++++|+|+++.+.++.......
T Consensus 106 ~~l~~~~~~~~~G~l~fGg~d~~---~~~~l~~~p~~~~~~----------~~~~~~v~l~~i~v~~~~~~~~~~~~~~~ 172 (265)
T cd05476 106 YCLVPHDDTGGSSPLILGDAADL---GGSGVVYTPLVKNPA----------NPTYYYVNLEGISVGGKRLPIPPSVFAID 172 (265)
T ss_pred EEccCCCCCCCCCeEEECCcccc---cCCCceEeecccCCC----------CCCceEeeeEEEEECCEEecCCchhcccc
Confidence 99986 2 99999999932 4 8999999987531 25799999999999999887654333222
Q ss_pred cCCCCCeEEeccccceecCHHHHHHHHHHHHHhccCCCCCCCCCCCccceecCCCCCCCcCCCCCeEEEEEcCCceEEEE
Q 044303 277 KEGFGGTKISTVFPYTVLETSIYKAFVKTFIKSYSNIPRVKPMAPFGACFNSSFIGSTHVGAAAPEIHLYMPGTNRMWKI 356 (428)
Q Consensus 277 ~~~~~~~iiDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~~~f~g~~~~~~i 356 (428)
......+||||||++++||+++| |+|+|+|++ ++++.+
T Consensus 173 ~~~~~~ai~DTGTs~~~lp~~~~-----------------------------------------P~i~~~f~~-~~~~~i 210 (265)
T cd05476 173 SDGSGGTIIDSGTTLTYLPDPAY-----------------------------------------PDLTLHFDG-GADLEL 210 (265)
T ss_pred cCCCCcEEEeCCCcceEcCcccc-----------------------------------------CCEEEEECC-CCEEEe
Confidence 23457899999999999998665 689999995 499999
Q ss_pred eccccEEEeCCCeEEEEEEeCCCCCCCceeechhhhcceEEEEeCCCCEEEEeecCccccCCc
Q 044303 357 FGAHSMVRVGKHAMCLAFVDGGVNPTTSIVIGAYQLEDNLLQFDLAKSRLGFSSSLLARQTTC 419 (428)
Q Consensus 357 ~~~~y~~~~~~~~~C~~~~~~~~~~~~~~ILG~~flr~~yvvFD~e~~rIGfa~~~~~~~~~C 419 (428)
++++|++...++..|+++..... .+.||||+.|||++|+|||.+++|||||+ ++|
T Consensus 211 ~~~~y~~~~~~~~~C~~~~~~~~--~~~~ilG~~fl~~~~~vFD~~~~~iGfa~------~~C 265 (265)
T cd05476 211 PPENYFVDVGEGVVCLAILSSSS--GGVSILGNIQQQNFLVEYDLENSRLGFAP------ADC 265 (265)
T ss_pred CcccEEEECCCCCEEEEEecCCC--CCcEEEChhhcccEEEEEECCCCEEeeec------CCC
Confidence 99999997666789999887642 46899999999999999999999999998 677
No 13
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=2.8e-50 Score=393.02 Aligned_cols=304 Identities=20% Similarity=0.240 Sum_probs=233.7
Q ss_pred EEEeeCCCCceEEEEEEecCCCceEEEEEecCCCceeecCCCCCCCCCcccccCCCcccCCCCCCCccCCCCCCCCCCCC
Q 044303 34 VPVTKDSSTLQYLTQIQQRTPLVPVKLTLDLGGGFLWVNCEQGFVSSSYKPARCGSAQCKIAGSESCVESCLPKGPGCNN 113 (428)
Q Consensus 34 ~Pl~~~~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~c~~S~t~~~~~c~s~~C~~~~~~~c~~~~~~~~~~~~~ 113 (428)
+||.+. .+.+|+++|.||||+|++.|+|||||+++||+|..| .+..|..+..++|. .++++..
T Consensus 1 ~~l~n~-~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C-----------~~~~C~~~~~y~~~-----~Sst~~~ 63 (320)
T cd05488 1 VPLTNY-LNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKC-----------GSIACFLHSKYDSS-----ASSTYKA 63 (320)
T ss_pred Cccccc-CCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCC-----------CCcccCCcceECCC-----CCcceee
Confidence 356653 468999999999999999999999999999999755 44456655555543 2344556
Q ss_pred CCCcceecCCCCCceeeeEEEEEEEEeecCCCCCCCcceecCceEEeccccccccCc-CCCcceEEecCCCCCchH----
Q 044303 114 NTCTHFPGNTVSHVSTFGELATDVVSIQSTDGSKPGQVVPVPNIIFACGATFLLEGL-ASGFQGMAGLGRNKVSLP---- 188 (428)
Q Consensus 114 ~~c~~~~~Y~~~~~~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~~fG~~~~~~~~~~-~~~~~GIlGLg~~~~S~~---- 188 (428)
+.|.+.+.|+ ++ +++|.+++|++++++. .++++.|||+.......+ ....+||||||++..+..
T Consensus 64 ~~~~~~~~y~-~g-~~~G~~~~D~v~ig~~---------~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~~~ 132 (320)
T cd05488 64 NGTEFKIQYG-SG-SLEGFVSQDTLSIGDL---------TIKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIVP 132 (320)
T ss_pred CCCEEEEEEC-Cc-eEEEEEEEeEEEECCE---------EECCEEEEEEecCCCcceeeeeeceEEecCCccccccCCCC
Confidence 7899999995 55 5899999999999875 788999999976632111 235799999999876543
Q ss_pred --HhhhhhhccC-CCcEEEecCCC----CceEecCCCCCCCCC-CCceEeeceeCCCCCCCCCcCCCCCcceEEEEeEEE
Q 044303 189 --SQLSAAAFKL-DRKFSICLSSN----GAVFFGDVSFPGIDP-KSLIYTRLIRNPVSSAGASFEGESSAEYFIGVKSIL 260 (428)
Q Consensus 189 --~ql~~~~~~~-~~~FS~~L~~~----G~l~fGg~d~~~~~~-g~l~~tpl~~~~~~~~~~~~~~~~~~~y~v~l~~i~ 260 (428)
.+|.+ ++.+ +++||+||.+. |.|+|||+|. .++ +++.|+|++. ..+|.|++++|+
T Consensus 133 ~~~~l~~-qg~i~~~~FS~~L~~~~~~~G~l~fGg~d~--~~~~g~l~~~p~~~--------------~~~w~v~l~~i~ 195 (320)
T cd05488 133 PFYNMIN-QGLLDEPVFSFYLGSSEEDGGEATFGGIDE--SRFTGKITWLPVRR--------------KAYWEVELEKIG 195 (320)
T ss_pred HHHHHHh-cCCCCCCEEEEEecCCCCCCcEEEECCcCH--HHcCCceEEEeCCc--------------CcEEEEEeCeEE
Confidence 35666 6666 68899999874 9999999983 234 8999999974 368999999999
Q ss_pred EcCeEeeccccccccccCCCCCeEEeccccceecCHHHHHHHHHHHHHhccCCCCCCCCCCCccceecCCCCCCCcCCCC
Q 044303 261 ISGNVVPLNKSLLSINKEGFGGTKISTVFPYTVLETSIYKAFVKTFIKSYSNIPRVKPMAPFGACFNSSFIGSTHVGAAA 340 (428)
Q Consensus 261 v~~~~l~~~~~~~~~~~~~~~~~iiDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~ 340 (428)
|+++.+... +..++|||||++++||+++++++.+++.+... .......+|.+. ..+
T Consensus 196 vg~~~~~~~----------~~~~ivDSGtt~~~lp~~~~~~l~~~~~~~~~-----~~~~~~~~C~~~---------~~~ 251 (320)
T cd05488 196 LGDEELELE----------NTGAAIDTGTSLIALPSDLAEMLNAEIGAKKS-----WNGQYTVDCSKV---------DSL 251 (320)
T ss_pred ECCEEeccC----------CCeEEEcCCcccccCCHHHHHHHHHHhCCccc-----cCCcEEeecccc---------ccC
Confidence 999876543 24699999999999999999998888753221 111112356643 368
Q ss_pred CeEEEEEcCCceEEEEeccccEEEeCCCeEEEEEEeCCC---CCCCceeechhhhcceEEEEeCCCCEEEEee
Q 044303 341 PEIHLYMPGTNRMWKIFGAHSMVRVGKHAMCLAFVDGGV---NPTTSIVIGAYQLEDNLLQFDLAKSRLGFSS 410 (428)
Q Consensus 341 P~i~~~f~g~~~~~~i~~~~y~~~~~~~~~C~~~~~~~~---~~~~~~ILG~~flr~~yvvFD~e~~rIGfa~ 410 (428)
|+|+|+|+| ++++|||++|++.. +..|+..+.... ...+.||||+.|||++|+|||++++|||||+
T Consensus 252 P~i~f~f~g--~~~~i~~~~y~~~~--~g~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 252 PDLTFNFDG--YNFTLGPFDYTLEV--SGSCISAFTGMDFPEPVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred CCEEEEECC--EEEEECHHHheecC--CCeEEEEEEECcCCCCCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 999999987 89999999999853 357986554321 1134799999999999999999999999995
No 14
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=6.2e-50 Score=390.39 Aligned_cols=299 Identities=18% Similarity=0.214 Sum_probs=234.9
Q ss_pred CceEEEEEEecCCCceEEEEEecCCCceeecCCCCCCCCCcccccCCCcccCCCCCCCccCCCCCCCCCCCCCCCcceec
Q 044303 42 TLQYLTQIQQRTPLVPVKLTLDLGGGFLWVNCEQGFVSSSYKPARCGSAQCKIAGSESCVESCLPKGPGCNNNTCTHFPG 121 (428)
Q Consensus 42 ~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~c~~S~t~~~~~c~s~~C~~~~~~~c~~~~~~~~~~~~~~~c~~~~~ 121 (428)
+..|+++|.||||||++.|+|||||+++||+|..| ....|..+..+++. .++++....|.|.+.
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C-----------~~~~C~~~~~f~~~-----~SsT~~~~~~~~~~~ 64 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLC-----------QSQACTNHTKFNPS-----QSSTYSTNGETFSLQ 64 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccCCC-----------CCccccccCCCCcc-----cCCCceECCcEEEEE
Confidence 46899999999999999999999999999999765 34456665555544 234455678999999
Q ss_pred CCCCCceeeeEEEEEEEEeecCCCCCCCcceecCceEEeccccccccC-cCCCcceEEecCCCC------CchHHhhhhh
Q 044303 122 NTVSHVSTFGELATDVVSIQSTDGSKPGQVVPVPNIIFACGATFLLEG-LASGFQGMAGLGRNK------VSLPSQLSAA 194 (428)
Q Consensus 122 Y~~~~~~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~~fG~~~~~~~~~-~~~~~~GIlGLg~~~------~S~~~ql~~~ 194 (428)
|+ ++ ++.|.+++|++++++. +++++.|||+....... .....+||||||++. .+++.||.+
T Consensus 65 Yg-~G-s~~G~~~~D~i~~g~~---------~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~- 132 (318)
T cd05477 65 YG-SG-SLTGIFGYDTVTVQGI---------IITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGMMQ- 132 (318)
T ss_pred EC-Cc-EEEEEEEeeEEEECCE---------EEcCEEEEEEEecccccccccceeeEeecCcccccccCCCCHHHHHHh-
Confidence 95 65 5799999999999875 78899999998763221 123579999999853 467889988
Q ss_pred hccC-CCcEEEecCCC-----CceEecCCCCCCCCC-CCceEeeceeCCCCCCCCCcCCCCCcceEEEEeEEEEcCeEee
Q 044303 195 AFKL-DRKFSICLSSN-----GAVFFGDVSFPGIDP-KSLIYTRLIRNPVSSAGASFEGESSAEYFIGVKSILISGNVVP 267 (428)
Q Consensus 195 ~~~~-~~~FS~~L~~~-----G~l~fGg~d~~~~~~-g~l~~tpl~~~~~~~~~~~~~~~~~~~y~v~l~~i~v~~~~l~ 267 (428)
++.+ +++||+||.++ |.|+|||+|. .++ +++.|+|+.. ..+|.|++++|+|+++++.
T Consensus 133 ~g~i~~~~FS~~L~~~~~~~~g~l~fGg~d~--~~~~g~l~~~pv~~--------------~~~w~v~l~~i~v~g~~~~ 196 (318)
T cd05477 133 QNLLQAPIFSFYLSGQQGQQGGELVFGGVDN--NLYTGQIYWTPVTS--------------ETYWQIGIQGFQINGQATG 196 (318)
T ss_pred cCCcCCCEEEEEEcCCCCCCCCEEEEcccCH--HHcCCceEEEecCC--------------ceEEEEEeeEEEECCEEec
Confidence 7766 68999999864 9999999983 234 8999999864 4699999999999998865
Q ss_pred ccccccccccCCCCCeEEeccccceecCHHHHHHHHHHHHHhccCCCCCCCCCCCccceecCCCCCCCcCCCCCeEEEEE
Q 044303 268 LNKSLLSINKEGFGGTKISTVFPYTVLETSIYKAFVKTFIKSYSNIPRVKPMAPFGACFNSSFIGSTHVGAAAPEIHLYM 347 (428)
Q Consensus 268 ~~~~~~~~~~~~~~~~iiDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~~~f 347 (428)
... .+..+||||||+++++|+++|++|.+++..... .......+|+.. ..+|+|+|+|
T Consensus 197 ~~~--------~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~~-----~~~~~~~~C~~~---------~~~p~l~~~f 254 (318)
T cd05477 197 WCS--------QGCQAIVDTGTSLLTAPQQVMSTLMQSIGAQQD-----QYGQYVVNCNNI---------QNLPTLTFTI 254 (318)
T ss_pred ccC--------CCceeeECCCCccEECCHHHHHHHHHHhCCccc-----cCCCEEEeCCcc---------ccCCcEEEEE
Confidence 321 135689999999999999999999998865432 111122456653 3689999999
Q ss_pred cCCceEEEEeccccEEEeCCCeEEE-EEEeCC---CCCCCceeechhhhcceEEEEeCCCCEEEEee
Q 044303 348 PGTNRMWKIFGAHSMVRVGKHAMCL-AFVDGG---VNPTTSIVIGAYQLEDNLLQFDLAKSRLGFSS 410 (428)
Q Consensus 348 ~g~~~~~~i~~~~y~~~~~~~~~C~-~~~~~~---~~~~~~~ILG~~flr~~yvvFD~e~~rIGfa~ 410 (428)
++ ++++|++++|+... +..|+ ++.... ..+.+.||||+.|||++|+|||++++|||||+
T Consensus 255 ~g--~~~~v~~~~y~~~~--~~~C~~~i~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~ig~a~ 317 (318)
T cd05477 255 NG--VSFPLPPSAYILQN--NGYCTVGIEPTYLPSQNGQPLWILGDVFLRQYYSVYDLGNNQVGFAT 317 (318)
T ss_pred CC--EEEEECHHHeEecC--CCeEEEEEEecccCCCCCCceEEEcHHHhhheEEEEeCCCCEEeeee
Confidence 87 99999999999864 45786 665432 11235799999999999999999999999997
No 15
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=2.1e-49 Score=388.11 Aligned_cols=307 Identities=19% Similarity=0.259 Sum_probs=235.3
Q ss_pred EEeeCCCCceEEEEEEecCCCceEEEEEecCCCceeecCCCCCCCCCcccccCCCcccCCCCCCCccCCCCCCCCCCCCC
Q 044303 35 PVTKDSSTLQYLTQIQQRTPLVPVKLTLDLGGGFLWVNCEQGFVSSSYKPARCGSAQCKIAGSESCVESCLPKGPGCNNN 114 (428)
Q Consensus 35 Pl~~~~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~c~~S~t~~~~~c~s~~C~~~~~~~c~~~~~~~~~~~~~~ 114 (428)
||.+ ..+.+|+++|.||||+|++.|+|||||+++||+|..|.. | ...|..+..++|. .++++...
T Consensus 3 ~~~n-~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~--------~-~~~c~~~~~y~~~-----~Sst~~~~ 67 (329)
T cd05485 3 PLSN-YMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSW--------T-NIACLLHNKYDST-----KSSTYKKN 67 (329)
T ss_pred ccee-ccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCC--------C-CccccCCCeECCc-----CCCCeEEC
Confidence 4554 357899999999999999999999999999999987721 1 1245544444443 23445567
Q ss_pred CCcceecCCCCCceeeeEEEEEEEEeecCCCCCCCcceecCceEEecccccccc-CcCCCcceEEecCCCCCc------h
Q 044303 115 TCTHFPGNTVSHVSTFGELATDVVSIQSTDGSKPGQVVPVPNIIFACGATFLLE-GLASGFQGMAGLGRNKVS------L 187 (428)
Q Consensus 115 ~c~~~~~Y~~~~~~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~~fG~~~~~~~~-~~~~~~~GIlGLg~~~~S------~ 187 (428)
.|.|.+.|+ ++ ++.|.+++|++++++. +++++.|||+..+... ......+||||||++..+ +
T Consensus 68 ~~~~~i~Y~-~g-~~~G~~~~D~v~ig~~---------~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~ 136 (329)
T cd05485 68 GTEFAIQYG-SG-SLSGFLSTDTVSVGGV---------SVKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGVVPV 136 (329)
T ss_pred CeEEEEEEC-Cc-eEEEEEecCcEEECCE---------EECCEEEEEEEecCCccccccccceEEEcCCccccccCCCCH
Confidence 899999995 65 4899999999999875 7789999999765221 112457999999998665 4
Q ss_pred HHhhhhhhccC-CCcEEEecCCC------CceEecCCCCCCCCC-CCceEeeceeCCCCCCCCCcCCCCCcceEEEEeEE
Q 044303 188 PSQLSAAAFKL-DRKFSICLSSN------GAVFFGDVSFPGIDP-KSLIYTRLIRNPVSSAGASFEGESSAEYFIGVKSI 259 (428)
Q Consensus 188 ~~ql~~~~~~~-~~~FS~~L~~~------G~l~fGg~d~~~~~~-g~l~~tpl~~~~~~~~~~~~~~~~~~~y~v~l~~i 259 (428)
..||.+ ++.+ +++||+||.+. |+|+|||+|. .++ |++.|+|+.. ..+|.|.+++|
T Consensus 137 ~~~l~~-qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~--~~~~g~l~~~p~~~--------------~~~~~v~~~~i 199 (329)
T cd05485 137 FYNMVN-QKLVDAPVFSFYLNRDPSAKEGGELILGGSDP--KHYTGNFTYLPVTR--------------KGYWQFKMDSV 199 (329)
T ss_pred HHHHHh-CCCCCCCEEEEEecCCCCCCCCcEEEEcccCH--HHcccceEEEEcCC--------------ceEEEEEeeEE
Confidence 567877 7776 67899999863 9999999983 244 8999999963 46999999999
Q ss_pred EEcCeEeeccccccccccCCCCCeEEeccccceecCHHHHHHHHHHHHHhccCCCCCCCCCCCccceecCCCCCCCcCCC
Q 044303 260 LISGNVVPLNKSLLSINKEGFGGTKISTVFPYTVLETSIYKAFVKTFIKSYSNIPRVKPMAPFGACFNSSFIGSTHVGAA 339 (428)
Q Consensus 260 ~v~~~~l~~~~~~~~~~~~~~~~~iiDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~ 339 (428)
+++++.+.. .+..+||||||+++++|++++++|.+++.... ........+|+.. .+
T Consensus 200 ~v~~~~~~~----------~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~-----~~~~~~~~~C~~~---------~~ 255 (329)
T cd05485 200 SVGEGEFCS----------GGCQAIADTGTSLIAGPVDEIEKLNNAIGAKP-----IIGGEYMVNCSAI---------PS 255 (329)
T ss_pred EECCeeecC----------CCcEEEEccCCcceeCCHHHHHHHHHHhCCcc-----ccCCcEEEecccc---------cc
Confidence 999987542 13469999999999999999999988875421 1111123466643 36
Q ss_pred CCeEEEEEcCCceEEEEeccccEEEeCC--CeEEE-EEEeCCC--CCCCceeechhhhcceEEEEeCCCCEEEEee
Q 044303 340 APEIHLYMPGTNRMWKIFGAHSMVRVGK--HAMCL-AFVDGGV--NPTTSIVIGAYQLEDNLLQFDLAKSRLGFSS 410 (428)
Q Consensus 340 ~P~i~~~f~g~~~~~~i~~~~y~~~~~~--~~~C~-~~~~~~~--~~~~~~ILG~~flr~~yvvFD~e~~rIGfa~ 410 (428)
+|+|+|+|++ ++++|+|++|+++..+ ...|+ ++..... ...+.||||+.|||++|+|||++++|||||+
T Consensus 256 ~p~i~f~fgg--~~~~i~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 256 LPDITFVLGG--KSFSLTGKDYVLKVTQMGQTICLSGFMGIDIPPPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred CCcEEEEECC--EEeEEChHHeEEEecCCCCCEEeeeEEECcCCCCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 8999999987 8999999999987653 46898 4554321 1235799999999999999999999999984
No 16
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=3.9e-49 Score=385.94 Aligned_cols=301 Identities=18% Similarity=0.247 Sum_probs=232.6
Q ss_pred CCceEEEEEEecCCCceEEEEEecCCCceeecCCCCCCCCCcccccCCCcccCCCCCCCccCCCCCCCCCCCCCCCccee
Q 044303 41 STLQYLTQIQQRTPLVPVKLTLDLGGGFLWVNCEQGFVSSSYKPARCGSAQCKIAGSESCVESCLPKGPGCNNNTCTHFP 120 (428)
Q Consensus 41 ~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~c~~S~t~~~~~c~s~~C~~~~~~~c~~~~~~~~~~~~~~~c~~~~ 120 (428)
.+.+|+++|+||||+|+++|+|||||+++||+|..|.. | ...|..+..++|. .++++....|.|.+
T Consensus 5 ~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~--------~-~~~c~~~~~y~~~-----~SsT~~~~~~~~~~ 70 (326)
T cd05487 5 LDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSP--------L-YTACVTHNLYDAS-----DSSTYKENGTEFTI 70 (326)
T ss_pred CCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcC--------c-chhhcccCcCCCC-----CCeeeeECCEEEEE
Confidence 57899999999999999999999999999999876621 1 1346666666654 23445567899999
Q ss_pred cCCCCCceeeeEEEEEEEEeecCCCCCCCcceecCceEEeccccccc-cCcCCCcceEEecCCCCCc------hHHhhhh
Q 044303 121 GNTVSHVSTFGELATDVVSIQSTDGSKPGQVVPVPNIIFACGATFLL-EGLASGFQGMAGLGRNKVS------LPSQLSA 193 (428)
Q Consensus 121 ~Y~~~~~~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~~fG~~~~~~~-~~~~~~~~GIlGLg~~~~S------~~~ql~~ 193 (428)
.|+ ++ ++.|.+++|+|++++. .+ ++.||++..... .......+||||||++..+ +..+|..
T Consensus 71 ~Yg-~g-~~~G~~~~D~v~~g~~---------~~-~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~ 138 (326)
T cd05487 71 HYA-SG-TVKGFLSQDIVTVGGI---------PV-TQMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVTPVFDNIMS 138 (326)
T ss_pred EeC-Cc-eEEEEEeeeEEEECCE---------Ee-eEEEEEEEeccCCccceeecceEEecCChhhcccCCCCHHHHHHh
Confidence 995 55 5899999999999875 45 478999876421 1122457999999987543 4566777
Q ss_pred hhccC-CCcEEEecCCC------CceEecCCCCCCCCC-CCceEeeceeCCCCCCCCCcCCCCCcceEEEEeEEEEcCeE
Q 044303 194 AAFKL-DRKFSICLSSN------GAVFFGDVSFPGIDP-KSLIYTRLIRNPVSSAGASFEGESSAEYFIGVKSILISGNV 265 (428)
Q Consensus 194 ~~~~~-~~~FS~~L~~~------G~l~fGg~d~~~~~~-g~l~~tpl~~~~~~~~~~~~~~~~~~~y~v~l~~i~v~~~~ 265 (428)
++.+ +++||+||.++ |+|+|||+|. .++ |++.|+|+.. ..+|+|.+++|+|+++.
T Consensus 139 -qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~--~~y~g~l~~~~~~~--------------~~~w~v~l~~i~vg~~~ 201 (326)
T cd05487 139 -QGVLKEDVFSVYYSRDSSHSLGGEIVLGGSDP--QHYQGDFHYINTSK--------------TGFWQIQMKGVSVGSST 201 (326)
T ss_pred -cCCCCCCEEEEEEeCCCCCCCCcEEEECCcCh--hhccCceEEEECCc--------------CceEEEEecEEEECCEE
Confidence 6666 68999999863 9999999983 245 8999999863 46899999999999987
Q ss_pred eeccccccccccCCCCCeEEeccccceecCHHHHHHHHHHHHHhccCCCCCCCCCCCccceecCCCCCCCcCCCCCeEEE
Q 044303 266 VPLNKSLLSINKEGFGGTKISTVFPYTVLETSIYKAFVKTFIKSYSNIPRVKPMAPFGACFNSSFIGSTHVGAAAPEIHL 345 (428)
Q Consensus 266 l~~~~~~~~~~~~~~~~~iiDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~~ 345 (428)
+.... +..+||||||++++||+++++++++++.+... ......+|+.. ..+|+|+|
T Consensus 202 ~~~~~---------~~~aiiDSGts~~~lP~~~~~~l~~~~~~~~~------~~~y~~~C~~~---------~~~P~i~f 257 (326)
T cd05487 202 LLCED---------GCTAVVDTGASFISGPTSSISKLMEALGAKER------LGDYVVKCNEV---------PTLPDISF 257 (326)
T ss_pred EecCC---------CCEEEECCCccchhCcHHHHHHHHHHhCCccc------CCCEEEecccc---------CCCCCEEE
Confidence 65321 35699999999999999999999998854321 11123467654 36899999
Q ss_pred EEcCCceEEEEeccccEEEeCC--CeEEE-EEEeCCC--CCCCceeechhhhcceEEEEeCCCCEEEEee
Q 044303 346 YMPGTNRMWKIFGAHSMVRVGK--HAMCL-AFVDGGV--NPTTSIVIGAYQLEDNLLQFDLAKSRLGFSS 410 (428)
Q Consensus 346 ~f~g~~~~~~i~~~~y~~~~~~--~~~C~-~~~~~~~--~~~~~~ILG~~flr~~yvvFD~e~~rIGfa~ 410 (428)
+|++ .+++|++++|+++..+ +..|+ ++...+. ..++.||||+.|||++|+|||++++|||||+
T Consensus 258 ~fgg--~~~~v~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~flr~~y~vfD~~~~~IGfA~ 325 (326)
T cd05487 258 HLGG--KEYTLSSSDYVLQDSDFSDKLCTVAFHAMDIPPPTGPLWVLGATFIRKFYTEFDRQNNRIGFAL 325 (326)
T ss_pred EECC--EEEEeCHHHhEEeccCCCCCEEEEEEEeCCCCCCCCCeEEEehHHhhccEEEEeCCCCEEeeee
Confidence 9976 8999999999997643 56887 5554321 1235799999999999999999999999997
No 17
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=8.5e-49 Score=393.50 Aligned_cols=307 Identities=16% Similarity=0.228 Sum_probs=231.9
Q ss_pred CceEEEEeeCCCCceEEEEEEecCCCceEEEEEecCCCceeecCCCCCCCCCcccccCCCcccCCCCCCCccCCCCCCCC
Q 044303 30 KALVVPVTKDSSTLQYLTQIQQRTPLVPVKLTLDLGGGFLWVNCEQGFVSSSYKPARCGSAQCKIAGSESCVESCLPKGP 109 (428)
Q Consensus 30 ~~~~~Pl~~~~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~c~~S~t~~~~~c~s~~C~~~~~~~c~~~~~~~~~ 109 (428)
..-.+||... .+.+|+++|.||||+|++.|+|||||+++||+|..| .+..|..+..++|. .++
T Consensus 125 ~~~~~~l~d~-~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C-----------~~~~C~~~~~yd~s-----~Ss 187 (450)
T PTZ00013 125 ENDVIELDDV-ANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKC-----------DSIGCSIKNLYDSS-----KSK 187 (450)
T ss_pred CCCceeeecc-CCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccC-----------CccccccCCCccCc-----cCc
Confidence 3456777753 578999999999999999999999999999999765 34457666666665 233
Q ss_pred CCCCCCCcceecCCCCCceeeeEEEEEEEEeecCCCCCCCcceecCceEEecccccc-cc--CcCCCcceEEecCCCCCc
Q 044303 110 GCNNNTCTHFPGNTVSHVSTFGELATDVVSIQSTDGSKPGQVVPVPNIIFACGATFL-LE--GLASGFQGMAGLGRNKVS 186 (428)
Q Consensus 110 ~~~~~~c~~~~~Y~~~~~~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~~fG~~~~~~-~~--~~~~~~~GIlGLg~~~~S 186 (428)
++....|.+.+.|+ +| ++.|.+++|+|++++. +++ ..|+++.... .. ......+||||||++..+
T Consensus 188 T~~~~~~~~~i~YG-~G-sv~G~~~~Dtv~iG~~---------~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s 255 (450)
T PTZ00013 188 SYEKDGTKVDITYG-SG-TVKGFFSKDLVTLGHL---------SMP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLS 255 (450)
T ss_pred ccccCCcEEEEEEC-Cc-eEEEEEEEEEEEECCE---------EEc-cEEEEEEeccccccceecccccceecccCCccc
Confidence 44566789999995 55 5999999999999875 565 5788876541 11 112357999999987653
Q ss_pred ------hHHhhhhhhccC-CCcEEEecCCC----CceEecCCCCCCCCC-CCceEeeceeCCCCCCCCCcCCCCCcceEE
Q 044303 187 ------LPSQLSAAAFKL-DRKFSICLSSN----GAVFFGDVSFPGIDP-KSLIYTRLIRNPVSSAGASFEGESSAEYFI 254 (428)
Q Consensus 187 ------~~~ql~~~~~~~-~~~FS~~L~~~----G~l~fGg~d~~~~~~-g~l~~tpl~~~~~~~~~~~~~~~~~~~y~v 254 (428)
++.+|.+ ++.+ +++||+||++. |.|+|||+|. ..+ |++.|+|+.. ..+|.|
T Consensus 256 ~~~~~p~~~~L~~-qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~--~~y~G~L~y~pv~~--------------~~yW~I 318 (450)
T PTZ00013 256 IGSIDPIVVELKN-QNKIDNALFTFYLPVHDVHAGYLTIGGIEE--KFYEGNITYEKLNH--------------DLYWQI 318 (450)
T ss_pred cccCCCHHHHHHh-ccCcCCcEEEEEecCCCCCCCEEEECCcCc--cccccceEEEEcCc--------------CceEEE
Confidence 5678887 7776 57899999854 9999999983 245 9999999963 468999
Q ss_pred EEeEEEEcCeEeeccccccccccCCCCCeEEeccccceecCHHHHHHHHHHHHHhccCCCCCCCCCCCccceecCCCCCC
Q 044303 255 GVKSILISGNVVPLNKSLLSINKEGFGGTKISTVFPYTVLETSIYKAFVKTFIKSYSNIPRVKPMAPFGACFNSSFIGST 334 (428)
Q Consensus 255 ~l~~i~v~~~~l~~~~~~~~~~~~~~~~~iiDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~ 334 (428)
.++ +.++.... .+..+||||||+++++|+++++++.+++.... .+. ......+|+.
T Consensus 319 ~l~-v~~G~~~~------------~~~~aIlDSGTSli~lP~~~~~~i~~~l~~~~--~~~--~~~y~~~C~~------- 374 (450)
T PTZ00013 319 DLD-VHFGKQTM------------QKANVIVDSGTTTITAPSEFLNKFFANLNVIK--VPF--LPFYVTTCDN------- 374 (450)
T ss_pred EEE-EEECceec------------cccceEECCCCccccCCHHHHHHHHHHhCCee--cCC--CCeEEeecCC-------
Confidence 997 66654332 13569999999999999999998888775321 111 1112345753
Q ss_pred CcCCCCCeEEEEEcCCceEEEEeccccEEEeC--CCeEEE-EEEeCCCCCCCceeechhhhcceEEEEeCCCCEEEEeec
Q 044303 335 HVGAAAPEIHLYMPGTNRMWKIFGAHSMVRVG--KHAMCL-AFVDGGVNPTTSIVIGAYQLEDNLLQFDLAKSRLGFSSS 411 (428)
Q Consensus 335 ~~~~~~P~i~~~f~g~~~~~~i~~~~y~~~~~--~~~~C~-~~~~~~~~~~~~~ILG~~flr~~yvvFD~e~~rIGfa~~ 411 (428)
..+|+|+|+|+| .+++|+|++|+.+.. ++..|+ ++.+... ..+.||||++|||++|+|||++++|||||++
T Consensus 375 ---~~lP~i~F~~~g--~~~~L~p~~Yi~~~~~~~~~~C~~~i~~~~~-~~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a 448 (450)
T PTZ00013 375 ---KEMPTLEFKSAN--NTYTLEPEYYMNPLLDVDDTLCMITMLPVDI-DDNTFILGDPFMRKYFTVFDYDKESVGFAIA 448 (450)
T ss_pred ---CCCCeEEEEECC--EEEEECHHHheehhccCCCCeeEEEEEECCC-CCCCEEECHHHhccEEEEEECCCCEEEEEEe
Confidence 257999999987 899999999987532 346898 5544332 2357999999999999999999999999986
Q ss_pred C
Q 044303 412 L 412 (428)
Q Consensus 412 ~ 412 (428)
+
T Consensus 449 ~ 449 (450)
T PTZ00013 449 K 449 (450)
T ss_pred C
Confidence 4
No 18
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=7.2e-49 Score=394.80 Aligned_cols=308 Identities=16% Similarity=0.224 Sum_probs=234.4
Q ss_pred CCceEEEEeeCCCCceEEEEEEecCCCceEEEEEecCCCceeecCCCCCCCCCcccccCCCcccCCCCCCCccCCCCCCC
Q 044303 29 PKALVVPVTKDSSTLQYLTQIQQRTPLVPVKLTLDLGGGFLWVNCEQGFVSSSYKPARCGSAQCKIAGSESCVESCLPKG 108 (428)
Q Consensus 29 ~~~~~~Pl~~~~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~c~~S~t~~~~~c~s~~C~~~~~~~c~~~~~~~~ 108 (428)
.....+||.. ..+.+|+++|+||||||++.|+|||||+++||+|..| .+..|..+..+++. .+
T Consensus 125 ~~~~~v~L~n-~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C-----------~~~~C~~~~~yd~s-----~S 187 (453)
T PTZ00147 125 SEFDNVELKD-LANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKC-----------TTEGCETKNLYDSS-----KS 187 (453)
T ss_pred CCCCeeeccc-cCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCC-----------CcccccCCCccCCc-----cC
Confidence 3446778875 3578999999999999999999999999999999765 34457666666654 23
Q ss_pred CCCCCCCCcceecCCCCCceeeeEEEEEEEEeecCCCCCCCcceecCceEEeccccccc-c--CcCCCcceEEecCCCCC
Q 044303 109 PGCNNNTCTHFPGNTVSHVSTFGELATDVVSIQSTDGSKPGQVVPVPNIIFACGATFLL-E--GLASGFQGMAGLGRNKV 185 (428)
Q Consensus 109 ~~~~~~~c~~~~~Y~~~~~~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~~fG~~~~~~~-~--~~~~~~~GIlGLg~~~~ 185 (428)
++|....|.|.+.|+ +| ++.|.+++|+|++++. +++ ..|+|+..... + ......|||||||++..
T Consensus 188 sT~~~~~~~f~i~Yg-~G-svsG~~~~DtVtiG~~---------~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~ 255 (453)
T PTZ00147 188 KTYEKDGTKVEMNYV-SG-TVSGFFSKDLVTIGNL---------SVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDL 255 (453)
T ss_pred cceEECCCEEEEEeC-CC-CEEEEEEEEEEEECCE---------EEE-EEEEEEEeccCcccccccccccceecccCCcc
Confidence 445567789999995 55 6899999999999875 666 57888765421 1 11235799999999865
Q ss_pred c------hHHhhhhhhccC-CCcEEEecCCC----CceEecCCCCCCCCC-CCceEeeceeCCCCCCCCCcCCCCCcceE
Q 044303 186 S------LPSQLSAAAFKL-DRKFSICLSSN----GAVFFGDVSFPGIDP-KSLIYTRLIRNPVSSAGASFEGESSAEYF 253 (428)
Q Consensus 186 S------~~~ql~~~~~~~-~~~FS~~L~~~----G~l~fGg~d~~~~~~-g~l~~tpl~~~~~~~~~~~~~~~~~~~y~ 253 (428)
+ ++.+|.. ++.+ +++||+||.+. |.|+|||+|. ..+ |++.|+|+.. ..+|.
T Consensus 256 S~~~~~p~~~~L~~-qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~--~ky~G~l~y~pl~~--------------~~~W~ 318 (453)
T PTZ00147 256 SIGSVDPYVVELKN-QNKIEQAVFTFYLPPEDKHKGYLTIGGIEE--RFYEGPLTYEKLNH--------------DLYWQ 318 (453)
T ss_pred ccccCCCHHHHHHH-cCCCCccEEEEEecCCCCCCeEEEECCcCh--hhcCCceEEEEcCC--------------CceEE
Confidence 4 4568887 7767 67899999864 9999999983 234 8999999953 46899
Q ss_pred EEEeEEEEcCeEeeccccccccccCCCCCeEEeccccceecCHHHHHHHHHHHHHhccCCCCCCCCCCCccceecCCCCC
Q 044303 254 IGVKSILISGNVVPLNKSLLSINKEGFGGTKISTVFPYTVLETSIYKAFVKTFIKSYSNIPRVKPMAPFGACFNSSFIGS 333 (428)
Q Consensus 254 v~l~~i~v~~~~l~~~~~~~~~~~~~~~~~iiDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~ 333 (428)
|.++ +.+++... ....+||||||+++++|+++++++.+++.... .+.. .....+|+.
T Consensus 319 V~l~-~~vg~~~~------------~~~~aIiDSGTsli~lP~~~~~ai~~~l~~~~--~~~~--~~y~~~C~~------ 375 (453)
T PTZ00147 319 VDLD-VHFGNVSS------------EKANVIVDSGTSVITVPTEFLNKFVESLDVFK--VPFL--PLYVTTCNN------ 375 (453)
T ss_pred EEEE-EEECCEec------------CceeEEECCCCchhcCCHHHHHHHHHHhCCee--cCCC--CeEEEeCCC------
Confidence 9997 46765421 13579999999999999999999998885321 1111 112346764
Q ss_pred CCcCCCCCeEEEEEcCCceEEEEeccccEEEeCC--CeEEE-EEEeCCCCCCCceeechhhhcceEEEEeCCCCEEEEee
Q 044303 334 THVGAAAPEIHLYMPGTNRMWKIFGAHSMVRVGK--HAMCL-AFVDGGVNPTTSIVIGAYQLEDNLLQFDLAKSRLGFSS 410 (428)
Q Consensus 334 ~~~~~~~P~i~~~f~g~~~~~~i~~~~y~~~~~~--~~~C~-~~~~~~~~~~~~~ILG~~flr~~yvvFD~e~~rIGfa~ 410 (428)
..+|+|+|.|++ ..++|+|++|+....+ ...|+ ++...+. ..+.||||++|||++|+|||++++|||||+
T Consensus 376 ----~~lP~~~f~f~g--~~~~L~p~~yi~~~~~~~~~~C~~~i~~~~~-~~~~~ILGd~FLr~~YtVFD~~n~rIGfA~ 448 (453)
T PTZ00147 376 ----TKLPTLEFRSPN--KVYTLEPEYYLQPIEDIGSALCMLNIIPIDL-EKNTFILGDPFMRKYFTVFDYDNHTVGFAL 448 (453)
T ss_pred ----CCCCeEEEEECC--EEEEECHHHheeccccCCCcEEEEEEEECCC-CCCCEEECHHHhccEEEEEECCCCEEEEEE
Confidence 258999999987 8999999999976432 35797 4655432 235799999999999999999999999998
Q ss_pred cC
Q 044303 411 SL 412 (428)
Q Consensus 411 ~~ 412 (428)
++
T Consensus 449 a~ 450 (453)
T PTZ00147 449 AK 450 (453)
T ss_pred ec
Confidence 53
No 19
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=2.2e-47 Score=379.01 Aligned_cols=316 Identities=19% Similarity=0.184 Sum_probs=226.7
Q ss_pred ceEEEEEEecCCCceEEEEEecCCCceeecCCCCCCCCCcccccCCCcccCCCCCCCccCCCCCCCCCCCCCCCcceecC
Q 044303 43 LQYLTQIQQRTPLVPVKLTLDLGGGFLWVNCEQGFVSSSYKPARCGSAQCKIAGSESCVESCLPKGPGCNNNTCTHFPGN 122 (428)
Q Consensus 43 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~c~~S~t~~~~~c~s~~C~~~~~~~c~~~~~~~~~~~~~~~c~~~~~Y 122 (428)
..|+++|.||||+|++.|+|||||+++||+|.+|. ..+..+++. .++++....|.|.+.|
T Consensus 2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~~---------------~~~~~f~~~-----~SsT~~~~~~~~~i~Y 61 (364)
T cd05473 2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPHP---------------FIHTYFHRE-----LSSTYRDLGKGVTVPY 61 (364)
T ss_pred CceEEEEEecCCCceEEEEEecCCcceEEEcCCCc---------------cccccCCch-----hCcCcccCCceEEEEE
Confidence 47999999999999999999999999999997651 112223332 2334456789999999
Q ss_pred CCCCceeeeEEEEEEEEeecCCCCCCCcceecCceEEeccccccccCcC-CCcceEEecCCCCCc--------hHHhhhh
Q 044303 123 TVSHVSTFGELATDVVSIQSTDGSKPGQVVPVPNIIFACGATFLLEGLA-SGFQGMAGLGRNKVS--------LPSQLSA 193 (428)
Q Consensus 123 ~~~~~~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~~fG~~~~~~~~~~~-~~~~GIlGLg~~~~S--------~~~ql~~ 193 (428)
+ +| ++.|.+++|+|+|++.. .+.+ .+.|++.......... ...+||||||++.++ +..+|.+
T Consensus 62 g-~G-s~~G~~~~D~v~ig~~~------~~~~-~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~ 132 (364)
T cd05473 62 T-QG-SWEGELGTDLVSIPKGP------NVTF-RANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEPFFDSLVK 132 (364)
T ss_pred C-cc-eEEEEEEEEEEEECCCC------ccce-EEeeEEEeccccceecccccceeeeecccccccCCCCCCCHHHHHHh
Confidence 5 55 67999999999997531 0122 1345555443111111 257999999987653 4557777
Q ss_pred hhccCCCcEEEecC-------C-----C-CceEecCCCCCCCCC-CCceEeeceeCCCCCCCCCcCCCCCcceEEEEeEE
Q 044303 194 AAFKLDRKFSICLS-------S-----N-GAVFFGDVSFPGIDP-KSLIYTRLIRNPVSSAGASFEGESSAEYFIGVKSI 259 (428)
Q Consensus 194 ~~~~~~~~FS~~L~-------~-----~-G~l~fGg~d~~~~~~-g~l~~tpl~~~~~~~~~~~~~~~~~~~y~v~l~~i 259 (428)
++.++++||+||. + . |.|+|||+|. .++ |++.|+|++. ..+|.|.+++|
T Consensus 133 -q~~~~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~--~~~~g~l~~~p~~~--------------~~~~~v~l~~i 195 (364)
T cd05473 133 -QTGIPDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDP--SLYKGDIWYTPIRE--------------EWYYEVIILKL 195 (364)
T ss_pred -ccCCccceEEEecccccccccccccCCCcEEEeCCcCH--hhcCCCceEEecCc--------------ceeEEEEEEEE
Confidence 6656779999773 1 1 9999999983 234 8999999974 36899999999
Q ss_pred EEcCeEeeccccccccccCCCCCeEEeccccceecCHHHHHHHHHHHHHhccCCCCCCCC---CCCccceecCCCCCCCc
Q 044303 260 LISGNVVPLNKSLLSINKEGFGGTKISTVFPYTVLETSIYKAFVKTFIKSYSNIPRVKPM---APFGACFNSSFIGSTHV 336 (428)
Q Consensus 260 ~v~~~~l~~~~~~~~~~~~~~~~~iiDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~~~~~---~~~~~C~~~~~~~~~~~ 336 (428)
+|+++.+..+...+. ...+||||||++++||+++|++|.+++.++... +..+.. .....|+..... .
T Consensus 196 ~vg~~~~~~~~~~~~-----~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~~~C~~~~~~----~ 265 (364)
T cd05473 196 EVGGQSLNLDCKEYN-----YDKAIVDSGTTNLRLPVKVFNAAVDAIKAASLI-EDFPDGFWLGSQLACWQKGTT----P 265 (364)
T ss_pred EECCEeccccccccc-----CccEEEeCCCcceeCCHHHHHHHHHHHHhhccc-ccCCccccCcceeecccccCc----h
Confidence 999998865432211 246999999999999999999999999887531 111111 112468764321 1
Q ss_pred CCCCCeEEEEEcCC----ceEEEEeccccEEEeC---CCeEEEEEEeCCCCCCCceeechhhhcceEEEEeCCCCEEEEe
Q 044303 337 GAAAPEIHLYMPGT----NRMWKIFGAHSMVRVG---KHAMCLAFVDGGVNPTTSIVIGAYQLEDNLLQFDLAKSRLGFS 409 (428)
Q Consensus 337 ~~~~P~i~~~f~g~----~~~~~i~~~~y~~~~~---~~~~C~~~~~~~~~~~~~~ILG~~flr~~yvvFD~e~~rIGfa 409 (428)
...+|+|+|+|++. +++++|+|++|+.... .+..|+++..... .+.||||+.|||++|+|||++++|||||
T Consensus 266 ~~~~P~i~~~f~g~~~~~~~~l~l~p~~Y~~~~~~~~~~~~C~~~~~~~~--~~~~ILG~~flr~~yvvfD~~~~rIGfa 343 (364)
T cd05473 266 WEIFPKISIYLRDENSSQSFRITILPQLYLRPVEDHGTQLDCYKFAISQS--TNGTVIGAVIMEGFYVVFDRANKRVGFA 343 (364)
T ss_pred HhhCCcEEEEEccCCCCceEEEEECHHHhhhhhccCCCcceeeEEeeecC--CCceEEeeeeEcceEEEEECCCCEEeeE
Confidence 13699999999862 3578999999998643 2468986433222 2469999999999999999999999999
Q ss_pred ecCccccCCcccc
Q 044303 410 SSLLARQTTCSNL 422 (428)
Q Consensus 410 ~~~~~~~~~C~~~ 422 (428)
+ ++|.++
T Consensus 344 ~------~~C~~~ 350 (364)
T cd05473 344 V------STCAEH 350 (364)
T ss_pred e------cccccc
Confidence 8 688763
No 20
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=9.5e-47 Score=364.21 Aligned_cols=272 Identities=19% Similarity=0.252 Sum_probs=222.4
Q ss_pred ceEEEEEEecCCCceEEEEEecCCCceeecCCCCCCCCCcccccCCCcccCCCCCCCccCCCCCCCCCCCCCCCcceecC
Q 044303 43 LQYLTQIQQRTPLVPVKLTLDLGGGFLWVNCEQGFVSSSYKPARCGSAQCKIAGSESCVESCLPKGPGCNNNTCTHFPGN 122 (428)
Q Consensus 43 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~c~~S~t~~~~~c~s~~C~~~~~~~c~~~~~~~~~~~~~~~c~~~~~Y 122 (428)
..|+++|.||||+|++.|+|||||+++||+ +|.+.|
T Consensus 1 ~~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~--------------------------------------------~~~~~Y 36 (295)
T cd05474 1 TYYSAELSVGTPPQKVTVLLDTGSSDLWVP--------------------------------------------DFSISY 36 (295)
T ss_pred CeEEEEEEECCCCcEEEEEEeCCCCcceee--------------------------------------------eeEEEe
Confidence 369999999999999999999999999996 167789
Q ss_pred CCCCceeeeEEEEEEEEeecCCCCCCCcceecCceEEeccccccccCcCCCcceEEecCCCCC-----------chHHhh
Q 044303 123 TVSHVSTFGELATDVVSIQSTDGSKPGQVVPVPNIIFACGATFLLEGLASGFQGMAGLGRNKV-----------SLPSQL 191 (428)
Q Consensus 123 ~~~~~~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~GIlGLg~~~~-----------S~~~ql 191 (428)
+ +++.+.|.+++|+|++++. +++++.|||++.. ...+||||||+.+. +++.||
T Consensus 37 ~-~g~~~~G~~~~D~v~~g~~---------~~~~~~fg~~~~~------~~~~GilGLg~~~~~~~~~~~~~~~s~~~~L 100 (295)
T cd05474 37 G-DGTSASGTWGTDTVSIGGA---------TVKNLQFAVANST------SSDVGVLGIGLPGNEATYGTGYTYPNFPIAL 100 (295)
T ss_pred c-cCCcEEEEEEEEEEEECCe---------EecceEEEEEecC------CCCcceeeECCCCCcccccCCCcCCCHHHHH
Confidence 5 8899999999999999875 7789999999884 24699999999775 688999
Q ss_pred hhhhccC-CCcEEEecCCC----CceEecCCCCCCCCC-CCceEeeceeCCCCCCCCCcCCCCCcceEEEEeEEEEcCeE
Q 044303 192 SAAAFKL-DRKFSICLSSN----GAVFFGDVSFPGIDP-KSLIYTRLIRNPVSSAGASFEGESSAEYFIGVKSILISGNV 265 (428)
Q Consensus 192 ~~~~~~~-~~~FS~~L~~~----G~l~fGg~d~~~~~~-g~l~~tpl~~~~~~~~~~~~~~~~~~~y~v~l~~i~v~~~~ 265 (428)
.+ ++.+ +++||+||.+. |.|+|||+|.. ++ +++.|+|+..+... ....+|.|.+++|+++++.
T Consensus 101 ~~-~g~i~~~~Fsl~l~~~~~~~g~l~~Gg~d~~--~~~g~~~~~p~~~~~~~--------~~~~~~~v~l~~i~v~~~~ 169 (295)
T cd05474 101 KK-QGLIKKNAYSLYLNDLDASTGSILFGGVDTA--KYSGDLVTLPIVNDNGG--------SEPSELSVTLSSISVNGSS 169 (295)
T ss_pred HH-CCcccceEEEEEeCCCCCCceeEEEeeeccc--eeeceeEEEeCcCcCCC--------CCceEEEEEEEEEEEEcCC
Confidence 98 7777 57899999983 99999999832 34 89999999875310 1237999999999999988
Q ss_pred eeccccccccccCCCCCeEEeccccceecCHHHHHHHHHHHHHhccCCCCCCCCCCCccceecCCCCCCCcCCCCCeEEE
Q 044303 266 VPLNKSLLSINKEGFGGTKISTVFPYTVLETSIYKAFVKTFIKSYSNIPRVKPMAPFGACFNSSFIGSTHVGAAAPEIHL 345 (428)
Q Consensus 266 l~~~~~~~~~~~~~~~~~iiDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~~ 345 (428)
+..+.. .+...+||||||++++||+++|++|.+++.+.... ........|+... . |+|+|
T Consensus 170 ~~~~~~------~~~~~~iiDSGt~~~~lP~~~~~~l~~~~~~~~~~----~~~~~~~~C~~~~---------~-p~i~f 229 (295)
T cd05474 170 GNTTLL------SKNLPALLDSGTTLTYLPSDIVDAIAKQLGATYDS----DEGLYVVDCDAKD---------D-GSLTF 229 (295)
T ss_pred Cccccc------CCCccEEECCCCccEeCCHHHHHHHHHHhCCEEcC----CCcEEEEeCCCCC---------C-CEEEE
Confidence 653211 23568999999999999999999999999765431 1122345677542 3 99999
Q ss_pred EEcCCceEEEEeccccEEEeC----CCeEEE-EEEeCCCCCCCceeechhhhcceEEEEeCCCCEEEEee
Q 044303 346 YMPGTNRMWKIFGAHSMVRVG----KHAMCL-AFVDGGVNPTTSIVIGAYQLEDNLLQFDLAKSRLGFSS 410 (428)
Q Consensus 346 ~f~g~~~~~~i~~~~y~~~~~----~~~~C~-~~~~~~~~~~~~~ILG~~flr~~yvvFD~e~~rIGfa~ 410 (428)
+|+| ++++||+++|+++.. .+..|+ ++.+... +.||||++|||++|+|||.+++|||||+
T Consensus 230 ~f~g--~~~~i~~~~~~~~~~~~~~~~~~C~~~i~~~~~---~~~iLG~~fl~~~y~vfD~~~~~ig~a~ 294 (295)
T cd05474 230 NFGG--ATISVPLSDLVLPASTDDGGDGACYLGIQPSTS---DYNILGDTFLRSAYVVYDLDNNEISLAQ 294 (295)
T ss_pred EECC--eEEEEEHHHhEeccccCCCCCCCeEEEEEeCCC---CcEEeChHHhhcEEEEEECCCCEEEeec
Confidence 9987 999999999998764 256775 6665542 5799999999999999999999999997
No 21
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=1.8e-45 Score=352.32 Aligned_cols=264 Identities=19% Similarity=0.187 Sum_probs=200.0
Q ss_pred EEEEEEecCCCceEEEEEecCCCceeecCCCCCCCCCcccccCCCcccCCCCCCCccCCCCCCCCCCC-CCCCcceecCC
Q 044303 45 YLTQIQQRTPLVPVKLTLDLGGGFLWVNCEQGFVSSSYKPARCGSAQCKIAGSESCVESCLPKGPGCN-NNTCTHFPGNT 123 (428)
Q Consensus 45 Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~c~~S~t~~~~~c~s~~C~~~~~~~c~~~~~~~~~~~~-~~~c~~~~~Y~ 123 (428)
|+++|+||||+|++.|+|||||+++||+|..|. .| .|..+..++|. .++++. ...|.|.+.|+
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~--------~~---~~~~~~~y~~~-----~Sst~~~~~~~~~~i~Y~ 64 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETP--------AA---QQGGHKLYDPS-----KSSTAKLLPGATWSISYG 64 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCC--------ch---hhccCCcCCCc-----cCccceecCCcEEEEEeC
Confidence 899999999999999999999999999998762 12 23333334433 222332 34689999996
Q ss_pred CCCceeeeEEEEEEEEeecCCCCCCCcceecCceEEeccccccccC-cCCCcceEEecCCCCCc---------hHHhhhh
Q 044303 124 VSHVSTFGELATDVVSIQSTDGSKPGQVVPVPNIIFACGATFLLEG-LASGFQGMAGLGRNKVS---------LPSQLSA 193 (428)
Q Consensus 124 ~~~~~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~~fG~~~~~~~~~-~~~~~~GIlGLg~~~~S---------~~~ql~~ 193 (428)
+++.+.|.+++|+|+|++. +++++.|||++...... .....+||||||++..+ +..+|.+
T Consensus 65 -~G~~~~G~~~~D~v~ig~~---------~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~ 134 (278)
T cd06097 65 -DGSSASGIVYTDTVSIGGV---------EVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFENALS 134 (278)
T ss_pred -CCCeEEEEEEEEEEEECCE---------EECCeEEEEEeecCccccccccccceeeeccccccccccCCCCCHHHHHHH
Confidence 8888999999999999875 78899999998763211 12468999999987653 3445655
Q ss_pred hhccCCCcEEEecCCC--CceEecCCCCCCCCC-CCceEeeceeCCCCCCCCCcCCCCCcceEEEEeEEEEcCeEeeccc
Q 044303 194 AAFKLDRKFSICLSSN--GAVFFGDVSFPGIDP-KSLIYTRLIRNPVSSAGASFEGESSAEYFIGVKSILISGNVVPLNK 270 (428)
Q Consensus 194 ~~~~~~~~FS~~L~~~--G~l~fGg~d~~~~~~-g~l~~tpl~~~~~~~~~~~~~~~~~~~y~v~l~~i~v~~~~l~~~~ 270 (428)
++. +++||+||.+. |+|+|||+|. .++ |++.|+|+..+ ..+|.|++++|+|+++.....
T Consensus 135 -~~~-~~~Fs~~l~~~~~G~l~fGg~D~--~~~~g~l~~~pi~~~-------------~~~w~v~l~~i~v~~~~~~~~- 196 (278)
T cd06097 135 -SLD-APLFTADLRKAAPGFYTFGYIDE--SKYKGEISWTPVDNS-------------SGFWQFTSTSYTVGGDAPWSR- 196 (278)
T ss_pred -hcc-CceEEEEecCCCCcEEEEeccCh--HHcCCceEEEEccCC-------------CcEEEEEEeeEEECCcceeec-
Confidence 443 68999999965 9999999983 234 89999999753 369999999999998843221
Q ss_pred cccccccCCCCCeEEeccccceecCHHHHHHHHHHHHHhccCCCCCCCCCCCccceecCCCCCCCcCCCCCeEEEEEcCC
Q 044303 271 SLLSINKEGFGGTKISTVFPYTVLETSIYKAFVKTFIKSYSNIPRVKPMAPFGACFNSSFIGSTHVGAAAPEIHLYMPGT 350 (428)
Q Consensus 271 ~~~~~~~~~~~~~iiDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~~~f~g~ 350 (428)
....+||||||+++++|+++++++.+++.... +... ..+|..++. ..+|+|+|+|
T Consensus 197 --------~~~~~iiDSGTs~~~lP~~~~~~l~~~l~g~~--~~~~------~~~~~~~C~------~~~P~i~f~~--- 251 (278)
T cd06097 197 --------SGFSAIADTGTTLILLPDAIVEAYYSQVPGAY--YDSE------YGGWVFPCD------TTLPDLSFAV--- 251 (278)
T ss_pred --------CCceEEeecCCchhcCCHHHHHHHHHhCcCCc--ccCC------CCEEEEECC------CCCCCEEEEE---
Confidence 14579999999999999999999988873211 1110 112333322 1379999887
Q ss_pred ceEEEEeccccEEEeCCCeEEEEEEeCCCCCCCceeechhhhcceEEEEeCCCCEEEEee
Q 044303 351 NRMWKIFGAHSMVRVGKHAMCLAFVDGGVNPTTSIVIGAYQLEDNLLQFDLAKSRLGFSS 410 (428)
Q Consensus 351 ~~~~~i~~~~y~~~~~~~~~C~~~~~~~~~~~~~~ILG~~flr~~yvvFD~e~~rIGfa~ 410 (428)
.||||++|||++|+|||++++|||||+
T Consensus 252 ---------------------------------~~ilGd~fl~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 252 ---------------------------------FSILGDVFLKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred ---------------------------------EEEEcchhhCceeEEEcCCCceeeecC
Confidence 589999999999999999999999995
No 22
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=9.4e-44 Score=346.43 Aligned_cols=298 Identities=21% Similarity=0.322 Sum_probs=228.8
Q ss_pred eEEEEEEecCCCceEEEEEecCCCceeecCCCCCCCCCcccccCCCcccCCCCCCCccCCCCCCCCCCCCCCCcceecCC
Q 044303 44 QYLTQIQQRTPLVPVKLTLDLGGGFLWVNCEQGFVSSSYKPARCGSAQCKIAGSESCVESCLPKGPGCNNNTCTHFPGNT 123 (428)
Q Consensus 44 ~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~c~~S~t~~~~~c~s~~C~~~~~~~c~~~~~~~~~~~~~~~c~~~~~Y~ 123 (428)
+|+++|.||||+|++.|++||||+++||++..|... ..|.....++|. .+++|.+..+.+.+.|+
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~----------~~~~~~~~y~~~-----~S~t~~~~~~~~~~~y~ 65 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSC----------SSCASSGFYNPS-----KSSTFSNQGKPFSISYG 65 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSH----------THHCTSC-BBGG-----GSTTEEEEEEEEEEEET
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceeccccc----------cccccccccccc-----cccccccceeeeeeecc
Confidence 699999999999999999999999999998765321 134444444443 12233445677999995
Q ss_pred CCCceeeeEEEEEEEEeecCCCCCCCcceecCceEEecccccccc-CcCCCcceEEecCCCC-------CchHHhhhhhh
Q 044303 124 VSHVSTFGELATDVVSIQSTDGSKPGQVVPVPNIIFACGATFLLE-GLASGFQGMAGLGRNK-------VSLPSQLSAAA 195 (428)
Q Consensus 124 ~~~~~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~~fG~~~~~~~~-~~~~~~~GIlGLg~~~-------~S~~~ql~~~~ 195 (428)
++. ++|.+++|+|+|++. .+.++.||++...... ......+||||||++. .+++.+|.+ +
T Consensus 66 -~g~-~~G~~~~D~v~ig~~---------~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~-~ 133 (317)
T PF00026_consen 66 -DGS-VSGNLVSDTVSIGGL---------TIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQ-Q 133 (317)
T ss_dssp -TEE-EEEEEEEEEEEETTE---------EEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHH-T
T ss_pred -Ccc-cccccccceEeeeec---------cccccceeccccccccccccccccccccccCCcccccccCCcceecchh-h
Confidence 655 999999999999886 7778999999885211 1134689999999743 467789988 7
Q ss_pred ccC-CCcEEEecCCC----CceEecCCCCCCCCC-CCceEeeceeCCCCCCCCCcCCCCCcceEEEEeEEEEcCeEeecc
Q 044303 196 FKL-DRKFSICLSSN----GAVFFGDVSFPGIDP-KSLIYTRLIRNPVSSAGASFEGESSAEYFIGVKSILISGNVVPLN 269 (428)
Q Consensus 196 ~~~-~~~FS~~L~~~----G~l~fGg~d~~~~~~-g~l~~tpl~~~~~~~~~~~~~~~~~~~y~v~l~~i~v~~~~l~~~ 269 (428)
+.+ +++||++|.+. |.|+|||+|. ..+ +++.|+|+.. ..+|.|.+.+|.++++.....
T Consensus 134 g~i~~~~fsl~l~~~~~~~g~l~~Gg~d~--~~~~g~~~~~~~~~--------------~~~w~v~~~~i~i~~~~~~~~ 197 (317)
T PF00026_consen 134 GLISSNVFSLYLNPSDSQNGSLTFGGYDP--SKYDGDLVWVPLVS--------------SGYWSVPLDSISIGGESVFSS 197 (317)
T ss_dssp TSSSSSEEEEEEESTTSSEEEEEESSEEG--GGEESEEEEEEBSS--------------TTTTEEEEEEEEETTEEEEEE
T ss_pred ccccccccceeeeecccccchheeecccc--ccccCceeccCccc--------------ccccccccccccccccccccc
Confidence 777 68899999886 9999999983 234 8999999983 479999999999999832221
Q ss_pred ccccccccCCCCCeEEeccccceecCHHHHHHHHHHHHHhccCCCCCCCCCCCccceecCCCCCCCcCCCCCeEEEEEcC
Q 044303 270 KSLLSINKEGFGGTKISTVFPYTVLETSIYKAFVKTFIKSYSNIPRVKPMAPFGACFNSSFIGSTHVGAAAPEIHLYMPG 349 (428)
Q Consensus 270 ~~~~~~~~~~~~~~iiDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~~~f~g 349 (428)
. ...++||||+++++||++++++|++++...... .....+|... ..+|.++|.|++
T Consensus 198 ~---------~~~~~~Dtgt~~i~lp~~~~~~i~~~l~~~~~~------~~~~~~c~~~---------~~~p~l~f~~~~ 253 (317)
T PF00026_consen 198 S---------GQQAILDTGTSYIYLPRSIFDAIIKALGGSYSD------GVYSVPCNST---------DSLPDLTFTFGG 253 (317)
T ss_dssp E---------EEEEEEETTBSSEEEEHHHHHHHHHHHTTEEEC------SEEEEETTGG---------GGSEEEEEEETT
T ss_pred c---------ceeeecccccccccccchhhHHHHhhhcccccc------eeEEEecccc---------cccceEEEeeCC
Confidence 1 235899999999999999999999999766431 1123456544 368999999997
Q ss_pred CceEEEEeccccEEEeCCC--eEEEEEEeC-C-CCCCCceeechhhhcceEEEEeCCCCEEEEee
Q 044303 350 TNRMWKIFGAHSMVRVGKH--AMCLAFVDG-G-VNPTTSIVIGAYQLEDNLLQFDLAKSRLGFSS 410 (428)
Q Consensus 350 ~~~~~~i~~~~y~~~~~~~--~~C~~~~~~-~-~~~~~~~ILG~~flr~~yvvFD~e~~rIGfa~ 410 (428)
.+++|+|++|+.+.... ..|...+.. + ....+.+|||.+|||++|+|||.|++|||||+
T Consensus 254 --~~~~i~~~~~~~~~~~~~~~~C~~~i~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~A~ 316 (317)
T PF00026_consen 254 --VTFTIPPSDYIFKIEDGNGGYCYLGIQPMDSSDDSDDWILGSPFLRNYYVVFDYENNRIGFAQ 316 (317)
T ss_dssp --EEEEEEHHHHEEEESSTTSSEEEESEEEESSTTSSSEEEEEHHHHTTEEEEEETTTTEEEEEE
T ss_pred --EEEEecchHhcccccccccceeEeeeecccccccCCceEecHHHhhceEEEEeCCCCEEEEec
Confidence 99999999999987653 378744433 1 12356899999999999999999999999997
No 23
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=3.9e-42 Score=329.42 Aligned_cols=269 Identities=25% Similarity=0.383 Sum_probs=208.5
Q ss_pred EEEEEEecCCCceEEEEEecCCCceeecCCCCCCCCCcccccCCCcccCCCCCCCccCCCCCCCCCCCCCCCcceecCCC
Q 044303 45 YLTQIQQRTPLVPVKLTLDLGGGFLWVNCEQGFVSSSYKPARCGSAQCKIAGSESCVESCLPKGPGCNNNTCTHFPGNTV 124 (428)
Q Consensus 45 Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~c~~S~t~~~~~c~s~~C~~~~~~~c~~~~~~~~~~~~~~~c~~~~~Y~~ 124 (428)
|+++|.||+|+|++.|+|||||+++||+|..|. .|....+... .+.+ ..+.+|.+..|.|.+.|+
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~--------~~~~~~~~~~-~~~~-----~~s~~~~~~~~~~~~~Y~- 65 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCT--------SCSCQKHPRF-KYDS-----SKSSTYKDTGCTFSITYG- 65 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCC--------ccccccCCCC-ccCc-----cCCceeecCCCEEEEEEC-
Confidence 789999999999999999999999999998773 1211111100 0000 122334678899999995
Q ss_pred CCceeeeEEEEEEEEeecCCCCCCCcceecCceEEeccccccccCcCCCcceEEecCCCC------CchHHhhhhhhccC
Q 044303 125 SHVSTFGELATDVVSIQSTDGSKPGQVVPVPNIIFACGATFLLEGLASGFQGMAGLGRNK------VSLPSQLSAAAFKL 198 (428)
Q Consensus 125 ~~~~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~GIlGLg~~~------~S~~~ql~~~~~~~ 198 (428)
+ +.+.|.+++|++++++. .++++.|||++...........+||||||+.. .+++.||.+ ++.+
T Consensus 66 ~-g~~~g~~~~D~v~~~~~---------~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~-~~~i 134 (283)
T cd05471 66 D-GSVTGGLGTDTVTIGGL---------TIPNQTFGCATSESGDFSSSGFDGILGLGFPSLSVDGVPSFFDQLKS-QGLI 134 (283)
T ss_pred C-CeEEEEEEEeEEEECCE---------EEeceEEEEEeccCCcccccccceEeecCCcccccccCCCHHHHHHH-CCCC
Confidence 5 68999999999999986 67899999999874322335689999999988 789999998 7765
Q ss_pred -CCcEEEecCC-----C-CceEecCCCCCCCCC-CCceEeeceeCCCCCCCCCcCCCCCcceEEEEeEEEEcCeEeeccc
Q 044303 199 -DRKFSICLSS-----N-GAVFFGDVSFPGIDP-KSLIYTRLIRNPVSSAGASFEGESSAEYFIGVKSILISGNVVPLNK 270 (428)
Q Consensus 199 -~~~FS~~L~~-----~-G~l~fGg~d~~~~~~-g~l~~tpl~~~~~~~~~~~~~~~~~~~y~v~l~~i~v~~~~l~~~~ 270 (428)
+++||+||.+ . |.|+|||+|.. ++ +++.|+|++... ..+|.|.+++|.|+++.....
T Consensus 135 ~~~~Fs~~l~~~~~~~~~g~l~~Gg~d~~--~~~~~~~~~p~~~~~------------~~~~~v~l~~i~v~~~~~~~~- 199 (283)
T cd05471 135 SSPVFSFYLGRDGDGGNGGELTFGGIDPS--KYTGDLTYTPVVSNG------------PGYWQVPLDGISVGGKSVISS- 199 (283)
T ss_pred CCCEEEEEEcCCCCCCCCCEEEEcccCcc--ccCCceEEEecCCCC------------CCEEEEEeCeEEECCceeeec-
Confidence 7899999987 2 99999999832 23 899999998752 479999999999999751111
Q ss_pred cccccccCCCCCeEEeccccceecCHHHHHHHHHHHHHhccCCCCCCCCCCCccceecCCCCCCCcCCCCCeEEEEEcCC
Q 044303 271 SLLSINKEGFGGTKISTVFPYTVLETSIYKAFVKTFIKSYSNIPRVKPMAPFGACFNSSFIGSTHVGAAAPEIHLYMPGT 350 (428)
Q Consensus 271 ~~~~~~~~~~~~~iiDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~~~f~g~ 350 (428)
.....++|||||++++||+++|++|.+++.+.... ...|+...+.. ...+|+|+|+|
T Consensus 200 -------~~~~~~iiDsGt~~~~lp~~~~~~l~~~~~~~~~~---------~~~~~~~~~~~----~~~~p~i~f~f--- 256 (283)
T cd05471 200 -------SGGGGAIVDSGTSLIYLPSSVYDAILKALGAAVSS---------SDGGYGVDCSP----CDTLPDITFTF--- 256 (283)
T ss_pred -------CCCcEEEEecCCCCEeCCHHHHHHHHHHhCCcccc---------cCCcEEEeCcc----cCcCCCEEEEE---
Confidence 22467999999999999999999999999766531 11232222211 14789999998
Q ss_pred ceEEEEeccccEEEeCCCeEEEEEEeCCCCCCCceeechhhhcceEEEEeCCCCEEEEee
Q 044303 351 NRMWKIFGAHSMVRVGKHAMCLAFVDGGVNPTTSIVIGAYQLEDNLLQFDLAKSRLGFSS 410 (428)
Q Consensus 351 ~~~~~i~~~~y~~~~~~~~~C~~~~~~~~~~~~~~ILG~~flr~~yvvFD~e~~rIGfa~ 410 (428)
.+|||++|||++|++||.+++|||||+
T Consensus 257 ---------------------------------~~ilG~~fl~~~y~vfD~~~~~igfa~ 283 (283)
T cd05471 257 ---------------------------------LWILGDVFLRNYYTVFDLDNNRIGFAP 283 (283)
T ss_pred ---------------------------------EEEccHhhhhheEEEEeCCCCEEeecC
Confidence 589999999999999999999999984
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.96 E-value=3.8e-29 Score=219.85 Aligned_cols=155 Identities=39% Similarity=0.689 Sum_probs=125.0
Q ss_pred EEEEEEecCCCceEEEEEecCCCceeecC----CCCCCCCCcccccCCCcccCCCCCCCccCCCCCCCCCCCCCCCccee
Q 044303 45 YLTQIQQRTPLVPVKLTLDLGGGFLWVNC----EQGFVSSSYKPARCGSAQCKIAGSESCVESCLPKGPGCNNNTCTHFP 120 (428)
Q Consensus 45 Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~----~~c~~S~t~~~~~c~s~~C~~~~~~~c~~~~~~~~~~~~~~~c~~~~ 120 (428)
|+++|.||||+|++.|++||||+++|++| -...+|+||+.++|.++.|...... +. ...|.+..|.|.+
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C~~~~f~~~~Sst~~~v~C~s~~C~~~~~~-~~------~~~~~~~~C~y~~ 73 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQCPDPPFDPSKSSTYRPVPCSSPQCSSAPSF-CP------CCCCSNNSCPYSQ 73 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET----STT-TTSSBEC-BTTSHHHHHCTSS-BT------CCTCESSEEEEEE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcCCCcccCCccCCcccccCCCCcchhhcccc-cc------cCCCCcCccccee
Confidence 89999999999999999999999999999 4567999999999999999866543 11 1112568899999
Q ss_pred cCCCCCceeeeEEEEEEEEeecCCCCCCCcceecCceEEeccccccccCcCCCcceEEecCCCCCchHHhhhhhhccCCC
Q 044303 121 GNTVSHVSTFGELATDVVSIQSTDGSKPGQVVPVPNIIFACGATFLLEGLASGFQGMAGLGRNKVSLPSQLSAAAFKLDR 200 (428)
Q Consensus 121 ~Y~~~~~~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~GIlGLg~~~~S~~~ql~~~~~~~~~ 200 (428)
.|+ +++.+.|.+++|+|+++..++. ...+.++.|||++.. .+.....+||||||+.++||++||.. + ..+
T Consensus 74 ~y~-~~s~~~G~l~~D~~~~~~~~~~----~~~~~~~~FGC~~~~--~g~~~~~~GilGLg~~~~Sl~sQl~~-~--~~~ 143 (164)
T PF14543_consen 74 SYG-DGSSSSGFLASDTLTFGSSSGG----SNSVPDFIFGCATSN--SGLFYGADGILGLGRGPLSLPSQLAS-S--SGN 143 (164)
T ss_dssp EET-TTEEEEEEEEEEEEEEEEESSS----SEEEEEEEEEEE-GG--GTSSTTEEEEEE-SSSTTSHHHHHHH-H----S
T ss_pred ecC-CCccccCceEEEEEEecCCCCC----CceeeeEEEEeeecc--ccCCcCCCcccccCCCcccHHHHHHH-h--cCC
Confidence 996 8999999999999999986422 246778999999998 35555899999999999999999987 5 568
Q ss_pred cEEEecCC-C----CceEecC
Q 044303 201 KFSICLSS-N----GAVFFGD 216 (428)
Q Consensus 201 ~FS~~L~~-~----G~l~fGg 216 (428)
+|||||.+ + |+|+||+
T Consensus 144 ~FSyCL~~~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 144 KFSYCLPSSSPSSSGFLSFGD 164 (164)
T ss_dssp EEEEEB-S-SSSSEEEEEECS
T ss_pred eEEEECCCCCCCCCEEEEeCc
Confidence 99999999 2 9999996
No 25
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.95 E-value=2.9e-27 Score=207.68 Aligned_cols=158 Identities=28% Similarity=0.513 Sum_probs=124.1
Q ss_pred ceEEEEeEEEEcCeEeeccccccccccCCCCCeEEeccccceecCHHHHHHHHHHHHHhccCC--CC-CCCCCCCcccee
Q 044303 251 EYFIGVKSILISGNVVPLNKSLLSINKEGFGGTKISTVFPYTVLETSIYKAFVKTFIKSYSNI--PR-VKPMAPFGACFN 327 (428)
Q Consensus 251 ~y~v~l~~i~v~~~~l~~~~~~~~~~~~~~~~~iiDSGTs~~~lp~~~~~~l~~~l~~~~~~~--~~-~~~~~~~~~C~~ 327 (428)
+|.|+|.+|+|+++++.+++..++. +.+.+++||||||++++||+++|++|+++|.+++... .+ ......+..||+
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~-~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy~ 79 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQL-SDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCYN 79 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCE-TTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EEE
T ss_pred CccEEEEEEEECCEEecCChHHhhc-cCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCceee
Confidence 4899999999999999999888766 6678899999999999999999999999999998743 22 234567789999
Q ss_pred cCCCCCCCcCCCCCeEEEEEcCCceEEEEeccccEEEeCCCeEEEEEEeCCCCCCCceeechhhhcceEEEEeCCCCEEE
Q 044303 328 SSFIGSTHVGAAAPEIHLYMPGTNRMWKIFGAHSMVRVGKHAMCLAFVDGGVNPTTSIVIGAYQLEDNLLQFDLAKSRLG 407 (428)
Q Consensus 328 ~~~~~~~~~~~~~P~i~~~f~g~~~~~~i~~~~y~~~~~~~~~C~~~~~~~~~~~~~~ILG~~flr~~yvvFD~e~~rIG 407 (428)
.+....+.....+|+|+|+|.+ +++|++++++|++...++..|+++.+......+..|||+.+|++++++||++++|||
T Consensus 80 ~~~~~~~~~~~~~P~i~l~F~~-ga~l~l~~~~y~~~~~~~~~Cla~~~~~~~~~~~~viG~~~~~~~~v~fDl~~~~ig 158 (161)
T PF14541_consen 80 LSSFGVNRDWAKFPTITLHFEG-GADLTLPPENYFVQVSPGVFCLAFVPSDADDDGVSVIGNFQQQNYHVVFDLENGRIG 158 (161)
T ss_dssp GGCS-EETTEESS--EEEEETT-SEEEEE-HHHHEEEECTTEEEESEEEETSTTSSSEEE-HHHCCTEEEEEETTTTEEE
T ss_pred ccccccccccccCCeEEEEEeC-CcceeeeccceeeeccCCCEEEEEEccCCCCCCcEEECHHHhcCcEEEEECCCCEEE
Confidence 8863222345789999999998 699999999999999888999999988222346899999999999999999999999
Q ss_pred Eee
Q 044303 408 FSS 410 (428)
Q Consensus 408 fa~ 410 (428)
|++
T Consensus 159 F~~ 161 (161)
T PF14541_consen 159 FAP 161 (161)
T ss_dssp EEE
T ss_pred EeC
Confidence 986
No 26
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.78 E-value=9.3e-19 Score=143.29 Aligned_cols=107 Identities=27% Similarity=0.295 Sum_probs=78.0
Q ss_pred EEEEecCCCceEEEEEecCCCceeecCCCCCCCCCcccccCCCcccCCCCCC-CccCCCCCCCCCCCCCCCcceecCCCC
Q 044303 47 TQIQQRTPLVPVKLTLDLGGGFLWVNCEQGFVSSSYKPARCGSAQCKIAGSE-SCVESCLPKGPGCNNNTCTHFPGNTVS 125 (428)
Q Consensus 47 ~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~c~~S~t~~~~~c~s~~C~~~~~~-~c~~~~~~~~~~~~~~~c~~~~~Y~~~ 125 (428)
++|.||||||++.|+|||||+++||+|+.|. .|. |.....+ ++. .++++....|.|.+.|+ +
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~--------~~~---~~~~~~~~~~~-----~sst~~~~~~~~~~~Y~-~ 63 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQ--------SLA---IYSHSSYDDPS-----ASSTYSDNGCTFSITYG-T 63 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCC--------Ccc---cccccccCCcC-----CCCCCCCCCcEEEEEeC-C
Confidence 4799999999999999999999999998762 121 1111111 111 11223456799999995 6
Q ss_pred CceeeeEEEEEEEEeecCCCCCCCcceecCceEEeccccccccC-cCCCcceEEec
Q 044303 126 HVSTFGELATDVVSIQSTDGSKPGQVVPVPNIIFACGATFLLEG-LASGFQGMAGL 180 (428)
Q Consensus 126 ~~~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~~fG~~~~~~~~~-~~~~~~GIlGL 180 (428)
+ ++.|.+++|+|+|++. .++++.|||++...... .....+|||||
T Consensus 64 g-~~~g~~~~D~v~ig~~---------~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 64 G-SLSGGLSTDTVSIGDI---------EVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred C-eEEEEEEEEEEEECCE---------EECCEEEEEEEecCCccccccccccccCC
Confidence 5 6789999999999875 68899999999874321 12468999998
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=97.73 E-value=9.7e-05 Score=58.12 Aligned_cols=93 Identities=14% Similarity=0.148 Sum_probs=60.2
Q ss_pred eEEEEEEecCCCceEEEEEecCCCceeecCCCCCCCCCcccccCCCcccCCCCCCCccCCCCCCCCCCCCCCCcceecCC
Q 044303 44 QYLTQIQQRTPLVPVKLTLDLGGGFLWVNCEQGFVSSSYKPARCGSAQCKIAGSESCVESCLPKGPGCNNNTCTHFPGNT 123 (428)
Q Consensus 44 ~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~c~~S~t~~~~~c~s~~C~~~~~~~c~~~~~~~~~~~~~~~c~~~~~Y~ 123 (428)
.|++++.|+. +++.++|||||+.+|++... .+ .+... ........+..
T Consensus 2 ~~~v~v~i~~--~~~~~llDTGa~~s~i~~~~------~~-------~l~~~----------------~~~~~~~~~~~- 49 (96)
T cd05483 2 HFVVPVTING--QPVRFLLDTGASTTVISEEL------AE-------RLGLP----------------LTLGGKVTVQT- 49 (96)
T ss_pred cEEEEEEECC--EEEEEEEECCCCcEEcCHHH------HH-------HcCCC----------------ccCCCcEEEEe-
Confidence 6899999995 99999999999999997421 00 01100 01112234444
Q ss_pred CCCceeeeEEEEEEEEeecCCCCCCCcceecCceEEeccccccccCcCCCcceEEecCC
Q 044303 124 VSHVSTFGELATDVVSIQSTDGSKPGQVVPVPNIIFACGATFLLEGLASGFQGMAGLGR 182 (428)
Q Consensus 124 ~~~~~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~GIlGLg~ 182 (428)
.++.........+.+++++. +++++.+........ ..+||||+.+
T Consensus 50 ~~G~~~~~~~~~~~i~ig~~---------~~~~~~~~v~d~~~~-----~~~gIlG~d~ 94 (96)
T cd05483 50 ANGRVRAARVRLDSLQIGGI---------TLRNVPAVVLPGDAL-----GVDGLLGMDF 94 (96)
T ss_pred cCCCccceEEEcceEEECCc---------EEeccEEEEeCCccc-----CCceEeChHH
Confidence 25555666666888999875 666777765554411 4799999863
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=96.52 E-value=0.015 Score=48.13 Aligned_cols=102 Identities=16% Similarity=0.082 Sum_probs=62.7
Q ss_pred EEEeeCCCCceEEEEEEecCCCceEEEEEecCCCceeecCCCCCCCCCcccccCCCcccCCCCCCCccCCCCCCCCCCCC
Q 044303 34 VPVTKDSSTLQYLTQIQQRTPLVPVKLTLDLGGGFLWVNCEQGFVSSSYKPARCGSAQCKIAGSESCVESCLPKGPGCNN 113 (428)
Q Consensus 34 ~Pl~~~~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~c~~S~t~~~~~c~s~~C~~~~~~~c~~~~~~~~~~~~~ 113 (428)
+||..+ .++.|++++.|.. +++.+++|||++.+-++.+- -+.+.. . . ..
T Consensus 2 ~~i~~~-~~g~~~v~~~InG--~~~~flVDTGAs~t~is~~~------A~~Lgl-----------~-------~----~~ 50 (121)
T TIGR02281 2 VQLAKD-GDGHFYATGRVNG--RNVRFLVDTGATSVALNEED------AQRLGL-----------D-------L----NR 50 (121)
T ss_pred EEEEEc-CCCeEEEEEEECC--EEEEEEEECCCCcEEcCHHH------HHHcCC-----------C-------c----cc
Confidence 567764 5789999999987 79999999999998876421 001100 0 0 00
Q ss_pred CCCcceecCCCCCceeeeEEEEEEEEeecCCCCCCCcceecCceEEeccccccccCcCCCcceEEecCC
Q 044303 114 NTCTHFPGNTVSHVSTFGELATDVVSIQSTDGSKPGQVVPVPNIIFACGATFLLEGLASGFQGMAGLGR 182 (428)
Q Consensus 114 ~~c~~~~~Y~~~~~~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~GIlGLg~ 182 (428)
..-...+. +.+|........-|.+.+++. .+.|+.+.+.... ...+|+||+.+
T Consensus 51 ~~~~~~~~-ta~G~~~~~~~~l~~l~iG~~---------~~~nv~~~v~~~~------~~~~~LLGm~f 103 (121)
T TIGR02281 51 LGYTVTVS-TANGQIKAARVTLDRVAIGGI---------VVNDVDAMVAEGG------ALSESLLGMSF 103 (121)
T ss_pred CCceEEEE-eCCCcEEEEEEEeCEEEECCE---------EEeCcEEEEeCCC------cCCceEcCHHH
Confidence 01112222 224444445567788999886 6777887665432 11379999873
No 29
>PF13650 Asp_protease_2: Aspartyl protease
Probab=95.27 E-value=0.11 Score=39.97 Aligned_cols=24 Identities=17% Similarity=0.401 Sum_probs=19.9
Q ss_pred EEEEecCCCceEEEEEecCCCceeec
Q 044303 47 TQIQQRTPLVPVKLTLDLGGGFLWVN 72 (428)
Q Consensus 47 ~~i~iGtP~Q~~~v~~DTGSs~~wv~ 72 (428)
+++.|+. +++.+++|||++.+.+.
T Consensus 1 V~v~vng--~~~~~liDTGa~~~~i~ 24 (90)
T PF13650_consen 1 VPVKVNG--KPVRFLIDTGASISVIS 24 (90)
T ss_pred CEEEECC--EEEEEEEcCCCCcEEEC
Confidence 3567776 89999999999987775
No 30
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=95.23 E-value=0.27 Score=40.76 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=22.3
Q ss_pred ceeechhhhcceEEEEeCCCCEEEE
Q 044303 384 SIVIGAYQLEDNLLQFDLAKSRLGF 408 (428)
Q Consensus 384 ~~ILG~~flr~~yvvFD~e~~rIGf 408 (428)
..|||..||+.+-.+.|+.+++|-+
T Consensus 100 d~ILG~d~L~~~~~~ID~~~~~i~~ 124 (124)
T cd05479 100 DFLIGLDMLKRHQCVIDLKENVLRI 124 (124)
T ss_pred CEEecHHHHHhCCeEEECCCCEEEC
Confidence 3599999999999999999998853
No 31
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=93.73 E-value=0.51 Score=39.13 Aligned_cols=31 Identities=19% Similarity=0.237 Sum_probs=26.9
Q ss_pred CCceEEEEEEecCCCceEEEEEecCCCceeecC
Q 044303 41 STLQYLTQIQQRTPLVPVKLTLDLGGGFLWVNC 73 (428)
Q Consensus 41 ~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~ 73 (428)
....+++++.|+. +++.+++|||++.+++..
T Consensus 13 ~~~~~~v~~~Ing--~~~~~LvDTGAs~s~Is~ 43 (124)
T cd05479 13 KVPMLYINVEING--VPVKAFVDSGAQMTIMSK 43 (124)
T ss_pred eeeEEEEEEEECC--EEEEEEEeCCCceEEeCH
Confidence 4568899999997 889999999999999863
No 32
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=92.31 E-value=0.92 Score=38.25 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=24.8
Q ss_pred eeechhhhcceEEEEeCCCCEEEEee
Q 044303 385 IVIGAYQLEDNLLQFDLAKSRLGFSS 410 (428)
Q Consensus 385 ~ILG~~flr~~yvvFD~e~~rIGfa~ 410 (428)
.|||..+|+.|..+-|+.+++|-|..
T Consensus 106 vILGm~WL~~~~~~IDw~~k~v~f~~ 131 (135)
T PF08284_consen 106 VILGMDWLKKHNPVIDWATKTVTFNS 131 (135)
T ss_pred eEeccchHHhCCCEEEccCCEEEEeC
Confidence 69999999999999999999999986
No 33
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=91.09 E-value=0.25 Score=38.44 Aligned_cols=27 Identities=19% Similarity=0.266 Sum_probs=24.4
Q ss_pred EEEEEEecCCCceEEEEEecCCCceeecC
Q 044303 45 YLTQIQQRTPLVPVKLTLDLGGGFLWVNC 73 (428)
Q Consensus 45 Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~ 73 (428)
|++++.|+. +++.+++||||+.++++-
T Consensus 1 ~~~~~~Ing--~~i~~lvDTGA~~svis~ 27 (91)
T cd05484 1 KTVTLLVNG--KPLKFQLDTGSAITVISE 27 (91)
T ss_pred CEEEEEECC--EEEEEEEcCCcceEEeCH
Confidence 578899998 899999999999999974
No 34
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=88.77 E-value=3.6 Score=33.11 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=20.2
Q ss_pred ceeechhhhcceEEEEeCCCCEE
Q 044303 384 SIVIGAYQLEDNLLQFDLAKSRL 406 (428)
Q Consensus 384 ~~ILG~~flr~~yvvFD~e~~rI 406 (428)
..+||..||+.+-.+-|+.++++
T Consensus 85 ~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 85 EPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred ccEecHHHHhhCCEEEehhhCcC
Confidence 46999999999999999988753
No 35
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=87.24 E-value=1.1 Score=33.20 Aligned_cols=31 Identities=16% Similarity=0.147 Sum_probs=27.7
Q ss_pred CCceEEEEEEecCCCceEEEEEecCCCceeecC
Q 044303 41 STLQYLTQIQQRTPLVPVKLTLDLGGGFLWVNC 73 (428)
Q Consensus 41 ~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~ 73 (428)
..+.+++++.||. +.+.+++||||+...++.
T Consensus 5 ~~g~~~v~~~I~g--~~~~alvDtGat~~fis~ 35 (72)
T PF13975_consen 5 DPGLMYVPVSIGG--VQVKALVDTGATHNFISE 35 (72)
T ss_pred cCCEEEEEEEECC--EEEEEEEeCCCcceecCH
Confidence 4578999999999 999999999999988864
No 36
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=86.91 E-value=1.7 Score=35.93 Aligned_cols=36 Identities=11% Similarity=0.124 Sum_probs=26.8
Q ss_pred CcceEEEEeEEEEcCeEeeccccccccccCCCCCeEEeccccceecCHHHHHHH
Q 044303 249 SAEYFIGVKSILISGNVVPLNKSLLSINKEGFGGTKISTVFPYTVLETSIYKAF 302 (428)
Q Consensus 249 ~~~y~v~l~~i~v~~~~l~~~~~~~~~~~~~~~~~iiDSGTs~~~lp~~~~~~l 302 (428)
.++|.+ .++|+|+.+. ++||||++.+.++.+..+++
T Consensus 9 ~g~~~v---~~~InG~~~~---------------flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 9 DGHFYA---TGRVNGRNVR---------------FLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CCeEEE---EEEECCEEEE---------------EEEECCCCcEEcCHHHHHHc
Confidence 466664 4678887543 79999999999998766543
No 37
>PF13650 Asp_protease_2: Aspartyl protease
Probab=85.27 E-value=1.3 Score=33.74 Aligned_cols=20 Identities=25% Similarity=0.203 Sum_probs=17.1
Q ss_pred eEEeccccceecCHHHHHHH
Q 044303 283 TKISTVFPYTVLETSIYKAF 302 (428)
Q Consensus 283 ~iiDSGTs~~~lp~~~~~~l 302 (428)
++||||++.+.++++.++++
T Consensus 12 ~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 12 FLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEEcCCCCcEEECHHHHHHc
Confidence 78999999999998777654
No 38
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=83.19 E-value=1.9 Score=33.38 Aligned_cols=30 Identities=17% Similarity=0.383 Sum_probs=24.7
Q ss_pred EEEEcCeEeeccccccccccCCCCCeEEeccccceecCHHHHHHH
Q 044303 258 SILISGNVVPLNKSLLSINKEGFGGTKISTVFPYTVLETSIYKAF 302 (428)
Q Consensus 258 ~i~v~~~~l~~~~~~~~~~~~~~~~~iiDSGTs~~~lp~~~~~~l 302 (428)
.+.|+|+.+. +.||||++.+.++.+.+.++
T Consensus 4 ~~~Ing~~i~---------------~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 4 TLLVNGKPLK---------------FQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEEECCEEEE---------------EEEcCCcceEEeCHHHHHHh
Confidence 4678888764 57999999999999887754
No 39
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=81.87 E-value=2 Score=33.67 Aligned_cols=28 Identities=14% Similarity=0.153 Sum_probs=23.6
Q ss_pred EEEEEEecCCCceEEEEEecCCCceeecCC
Q 044303 45 YLTQIQQRTPLVPVKLTLDLGGGFLWVNCE 74 (428)
Q Consensus 45 Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~ 74 (428)
-+++|.+.. +++.+++||||+.+-++.+
T Consensus 6 p~i~v~i~g--~~i~~LlDTGA~vsiI~~~ 33 (100)
T PF00077_consen 6 PYITVKING--KKIKALLDTGADVSIISEK 33 (100)
T ss_dssp SEEEEEETT--EEEEEEEETTBSSEEESSG
T ss_pred ceEEEeECC--EEEEEEEecCCCcceeccc
Confidence 367788887 8999999999999888753
No 40
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=77.89 E-value=4.4 Score=31.05 Aligned_cols=20 Identities=15% Similarity=0.112 Sum_probs=16.7
Q ss_pred eEEeccccceecCHHHHHHH
Q 044303 283 TKISTVFPYTVLETSIYKAF 302 (428)
Q Consensus 283 ~iiDSGTs~~~lp~~~~~~l 302 (428)
++||||++.+.++.+..+.+
T Consensus 16 ~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 16 FLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEEECCCCcEEcCHHHHHHc
Confidence 78999999999998765543
No 41
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=77.83 E-value=4.3 Score=29.99 Aligned_cols=30 Identities=20% Similarity=0.216 Sum_probs=23.7
Q ss_pred EEEEcCeEeeccccccccccCCCCCeEEeccccceecCHHHHHHH
Q 044303 258 SILISGNVVPLNKSLLSINKEGFGGTKISTVFPYTVLETSIYKAF 302 (428)
Q Consensus 258 ~i~v~~~~l~~~~~~~~~~~~~~~~~iiDSGTs~~~lp~~~~~~l 302 (428)
.+.|+++.+. +++|||++-.+++.+..+.+
T Consensus 12 ~~~I~g~~~~---------------alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 12 PVSIGGVQVK---------------ALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEEECCEEEE---------------EEEeCCCcceecCHHHHHHh
Confidence 4667776653 68999999999999777665
No 42
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=77.27 E-value=3.3 Score=31.69 Aligned_cols=29 Identities=17% Similarity=0.132 Sum_probs=23.3
Q ss_pred EEEcCeEeeccccccccccCCCCCeEEeccccceecCHHHHHHH
Q 044303 259 ILISGNVVPLNKSLLSINKEGFGGTKISTVFPYTVLETSIYKAF 302 (428)
Q Consensus 259 i~v~~~~l~~~~~~~~~~~~~~~~~iiDSGTs~~~lp~~~~~~l 302 (428)
+.|||+.+. +++|||.+.+.++++..+.+
T Consensus 3 v~InG~~~~---------------fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPIV---------------FLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEEE---------------EEEECCCCeEEECHHHhhhc
Confidence 567777654 68999999999999877664
No 43
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=69.67 E-value=18 Score=32.62 Aligned_cols=41 Identities=15% Similarity=0.080 Sum_probs=33.8
Q ss_pred CceEEEEeeCCCCceEEEEEEecCCCceEEEEEecCCCceeecC
Q 044303 30 KALVVPVTKDSSTLQYLTQIQQRTPLVPVKLTLDLGGGFLWVNC 73 (428)
Q Consensus 30 ~~~~~Pl~~~~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~ 73 (428)
...++-|..+ .++.|.++..|-. |++..++|||-+.+-++.
T Consensus 92 g~~~v~Lak~-~~GHF~a~~~VNG--k~v~fLVDTGATsVal~~ 132 (215)
T COG3577 92 GYQEVSLAKS-RDGHFEANGRVNG--KKVDFLVDTGATSVALNE 132 (215)
T ss_pred CceEEEEEec-CCCcEEEEEEECC--EEEEEEEecCcceeecCH
Confidence 3456666664 5889999999988 999999999999888864
No 44
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=68.04 E-value=5.4 Score=31.19 Aligned_cols=26 Identities=12% Similarity=0.233 Sum_probs=20.5
Q ss_pred eEEEEcCeEeeccccccccccCCCCCeEEeccccceecCHH
Q 044303 257 KSILISGNVVPLNKSLLSINKEGFGGTKISTVFPYTVLETS 297 (428)
Q Consensus 257 ~~i~v~~~~l~~~~~~~~~~~~~~~~~iiDSGTs~~~lp~~ 297 (428)
..|.++|+.+. ++||||++.+.++.+
T Consensus 8 i~v~i~g~~i~---------------~LlDTGA~vsiI~~~ 33 (100)
T PF00077_consen 8 ITVKINGKKIK---------------ALLDTGADVSIISEK 33 (100)
T ss_dssp EEEEETTEEEE---------------EEEETTBSSEEESSG
T ss_pred EEEeECCEEEE---------------EEEecCCCcceeccc
Confidence 35677777654 789999999999964
No 45
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=67.98 E-value=18 Score=31.33 Aligned_cols=21 Identities=10% Similarity=0.191 Sum_probs=16.5
Q ss_pred CeEEeccccceecCHHHHHHH
Q 044303 282 GTKISTVFPYTVLETSIYKAF 302 (428)
Q Consensus 282 ~~iiDSGTs~~~lp~~~~~~l 302 (428)
.+++|||+...++.+++.+.|
T Consensus 47 ~vLfDSGSPTSfIr~di~~kL 67 (177)
T PF12384_consen 47 KVLFDSGSPTSFIRSDIVEKL 67 (177)
T ss_pred EEEEeCCCccceeehhhHHhh
Confidence 478999999999887665544
No 46
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=65.06 E-value=8.2 Score=29.82 Aligned_cols=24 Identities=13% Similarity=0.011 Sum_probs=20.2
Q ss_pred EEEecCCCceEEEEEecCCCceeecC
Q 044303 48 QIQQRTPLVPVKLTLDLGGGFLWVNC 73 (428)
Q Consensus 48 ~i~iGtP~Q~~~v~~DTGSs~~wv~~ 73 (428)
.+.|+. |.+.+++|||+.++-+.-
T Consensus 2 ~~~i~g--~~~~~llDTGAd~Tvi~~ 25 (87)
T cd05482 2 TLYING--KLFEGLLDTGADVSIIAE 25 (87)
T ss_pred EEEECC--EEEEEEEccCCCCeEEcc
Confidence 456675 999999999999999864
No 47
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=63.74 E-value=8.4 Score=29.42 Aligned_cols=25 Identities=20% Similarity=0.357 Sum_probs=20.0
Q ss_pred EEEecCCCceEEEEEecCCCceeecCC
Q 044303 48 QIQQRTPLVPVKLTLDLGGGFLWVNCE 74 (428)
Q Consensus 48 ~i~iGtP~Q~~~v~~DTGSs~~wv~~~ 74 (428)
.+.|.. +++.+++|||++.+-+...
T Consensus 2 ~v~InG--~~~~fLvDTGA~~tii~~~ 26 (86)
T cd06095 2 TITVEG--VPIVFLVDTGATHSVLKSD 26 (86)
T ss_pred EEEECC--EEEEEEEECCCCeEEECHH
Confidence 355555 8999999999999998743
No 48
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=60.96 E-value=10 Score=29.63 Aligned_cols=20 Identities=20% Similarity=0.160 Sum_probs=17.3
Q ss_pred eEEeccccceecCHHHHHHH
Q 044303 283 TKISTVFPYTVLETSIYKAF 302 (428)
Q Consensus 283 ~iiDSGTs~~~lp~~~~~~l 302 (428)
+.+|||++...+|...|+.+
T Consensus 13 ~~vDtGA~vnllp~~~~~~l 32 (93)
T cd05481 13 FQLDTGATCNVLPLRWLKSL 32 (93)
T ss_pred EEEecCCEEEeccHHHHhhh
Confidence 67999999999998877654
No 49
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=60.72 E-value=19 Score=32.44 Aligned_cols=35 Identities=11% Similarity=0.040 Sum_probs=27.3
Q ss_pred CcceEEEEeEEEEcCeEeeccccccccccCCCCCeEEeccccceecCHHHHHH
Q 044303 249 SAEYFIGVKSILISGNVVPLNKSLLSINKEGFGGTKISTVFPYTVLETSIYKA 301 (428)
Q Consensus 249 ~~~y~v~l~~i~v~~~~l~~~~~~~~~~~~~~~~~iiDSGTs~~~lp~~~~~~ 301 (428)
.++|.+ ...|||+.+. .+||||.|...++++....
T Consensus 103 ~GHF~a---~~~VNGk~v~---------------fLVDTGATsVal~~~dA~R 137 (215)
T COG3577 103 DGHFEA---NGRVNGKKVD---------------FLVDTGATSVALNEEDARR 137 (215)
T ss_pred CCcEEE---EEEECCEEEE---------------EEEecCcceeecCHHHHHH
Confidence 466664 5788998865 6899999999999876554
No 50
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=54.06 E-value=17 Score=31.57 Aligned_cols=42 Identities=14% Similarity=0.224 Sum_probs=27.5
Q ss_pred eEEEEeeCC--CCceEEEEEEecCCCceEEEEEecCCCceeecC
Q 044303 32 LVVPVTKDS--STLQYLTQIQQRTPLVPVKLTLDLGGGFLWVNC 73 (428)
Q Consensus 32 ~~~Pl~~~~--~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~ 73 (428)
-..||.... ....=..++.++.-..++.++|||||+..++..
T Consensus 18 ~~~PIV~~~~~Pevg~T~~v~l~~~~t~i~vLfDSGSPTSfIr~ 61 (177)
T PF12384_consen 18 TTCPIVHYIAIPEVGKTAIVQLNCKGTPIKVLFDSGSPTSFIRS 61 (177)
T ss_pred eeeeeEEEeeccccCcEEEEEEeecCcEEEEEEeCCCccceeeh
Confidence 456666532 123334455555556899999999999877753
No 51
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=52.09 E-value=1.1e+02 Score=23.72 Aligned_cols=18 Identities=22% Similarity=-0.071 Sum_probs=15.2
Q ss_pred CCCeEEeccccceecCHH
Q 044303 280 FGGTKISTVFPYTVLETS 297 (428)
Q Consensus 280 ~~~~iiDSGTs~~~lp~~ 297 (428)
+-..+||||+....+|..
T Consensus 9 ~~~fLVDTGA~vSviP~~ 26 (89)
T cd06094 9 GLRFLVDTGAAVSVLPAS 26 (89)
T ss_pred CcEEEEeCCCceEeeccc
Confidence 456899999999999963
No 52
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=49.86 E-value=12 Score=30.82 Aligned_cols=20 Identities=30% Similarity=0.434 Sum_probs=17.5
Q ss_pred eEEecccc-ceecCHHHHHHH
Q 044303 283 TKISTVFP-YTVLETSIYKAF 302 (428)
Q Consensus 283 ~iiDSGTs-~~~lp~~~~~~l 302 (428)
.+||||.+ ++.+|+++++++
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~ 49 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKL 49 (125)
T ss_pred eEEecCCceeEEeCHHHHHhc
Confidence 47999999 999999888765
No 53
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=49.41 E-value=24 Score=33.35 Aligned_cols=44 Identities=14% Similarity=0.277 Sum_probs=30.1
Q ss_pred ceEEEEeeCCCCceEEEE---EEecC---CCceEEEEEecCCCceeecCC
Q 044303 31 ALVVPVTKDSSTLQYLTQ---IQQRT---PLVPVKLTLDLGGGFLWVNCE 74 (428)
Q Consensus 31 ~~~~Pl~~~~~~~~Y~~~---i~iGt---P~Q~~~v~~DTGSs~~wv~~~ 74 (428)
..-+|+........|.++ |.||. +.....++||||++.+.+|..
T Consensus 145 i~ytpl~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~ivDTGTt~t~lp~~ 194 (273)
T cd05475 145 VTWTPMRRESQKKHYSPGPASLLFNGQPTGGKGLEVVFDSGSSYTYFNAQ 194 (273)
T ss_pred eeecccccCCCCCeEEEeEeEEEECCEECcCCCceEEEECCCceEEcCCc
Confidence 345677654333567666 68874 234567999999999999854
No 54
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=46.61 E-value=27 Score=28.92 Aligned_cols=29 Identities=21% Similarity=0.139 Sum_probs=22.1
Q ss_pred EEEEcCeEeeccccccccccCCCCCeEEeccccceecCHHHHHH
Q 044303 258 SILISGNVVPLNKSLLSINKEGFGGTKISTVFPYTVLETSIYKA 301 (428)
Q Consensus 258 ~i~v~~~~l~~~~~~~~~~~~~~~~~iiDSGTs~~~lp~~~~~~ 301 (428)
.++++|+.+. ++||||+-.+.++.+..++
T Consensus 28 ~~~ing~~vk---------------A~VDtGAQ~tims~~~a~r 56 (124)
T PF09668_consen 28 NCKINGVPVK---------------AFVDTGAQSTIMSKSCAER 56 (124)
T ss_dssp EEEETTEEEE---------------EEEETT-SS-EEEHHHHHH
T ss_pred EEEECCEEEE---------------EEEeCCCCccccCHHHHHH
Confidence 5778888764 7899999999999877665
No 55
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=45.70 E-value=31 Score=28.55 Aligned_cols=30 Identities=20% Similarity=0.191 Sum_probs=21.5
Q ss_pred CCceEEEEEEecCCCceEEEEEecCCCceeec
Q 044303 41 STLQYLTQIQQRTPLVPVKLTLDLGGGFLWVN 72 (428)
Q Consensus 41 ~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~ 72 (428)
.....|++++|+. ++..+++|||+..+-++
T Consensus 21 ~v~mLyI~~~ing--~~vkA~VDtGAQ~tims 50 (124)
T PF09668_consen 21 QVSMLYINCKING--VPVKAFVDTGAQSTIMS 50 (124)
T ss_dssp -----EEEEEETT--EEEEEEEETT-SS-EEE
T ss_pred CcceEEEEEEECC--EEEEEEEeCCCCccccC
Confidence 3568899999999 99999999999988875
No 56
>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis
Probab=39.95 E-value=1.9e+02 Score=26.17 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=20.7
Q ss_pred ceeechhhhcceEEEEeCCCCEEEEee
Q 044303 384 SIVIGAYQLEDNLLQFDLAKSRLGFSS 410 (428)
Q Consensus 384 ~~ILG~~flr~~yvvFD~e~~rIGfa~ 410 (428)
-.|||+.|+|.|+=-.+++ .+|-|..
T Consensus 92 d~IlG~NF~r~y~Pfiq~~-~~I~f~~ 117 (201)
T PF02160_consen 92 DIILGNNFLRLYEPFIQTE-DRIQFHK 117 (201)
T ss_pred CEEecchHHHhcCCcEEEc-cEEEEEe
Confidence 4799999999988777775 5788764
No 57
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=39.34 E-value=1.5e+02 Score=29.35 Aligned_cols=31 Identities=13% Similarity=0.035 Sum_probs=22.1
Q ss_pred ceEEEEEEecCCC----ceE-EEEEecCCCceeecC
Q 044303 43 LQYLTQIQQRTPL----VPV-KLTLDLGGGFLWVNC 73 (428)
Q Consensus 43 ~~Y~~~i~iGtP~----Q~~-~v~~DTGSs~~wv~~ 73 (428)
+.-++.|.|=.|. |++ +|++||||.=+-+..
T Consensus 22 N~p~VsVtVC~PGts~CqTIdnvlVDTGS~GLRi~~ 57 (370)
T PF11925_consen 22 NIPTVSVTVCAPGTSNCQTIDNVLVDTGSYGLRIFA 57 (370)
T ss_pred cceeeEEEEeCCCCCCceeeCcEEEeccchhhhHHH
Confidence 4567777775553 566 899999998666543
No 58
>PLN03146 aspartyl protease family protein; Provisional
Probab=37.34 E-value=45 Score=33.93 Aligned_cols=43 Identities=12% Similarity=0.182 Sum_probs=28.9
Q ss_pred ceEEEEeeCCCCceEEEE---EEecC-----CCce------EEEEEecCCCceeecC
Q 044303 31 ALVVPVTKDSSTLQYLTQ---IQQRT-----PLVP------VKLTLDLGGGFLWVNC 73 (428)
Q Consensus 31 ~~~~Pl~~~~~~~~Y~~~---i~iGt-----P~Q~------~~v~~DTGSs~~wv~~ 73 (428)
....||........|++. |.||. |+-. -.++||||+.++++|.
T Consensus 267 ~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~~iiDSGTt~t~Lp~ 323 (431)
T PLN03146 267 VVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNGVEEGNIIIDSGTTLTLLPS 323 (431)
T ss_pred ceEcccccCCCCCeEEEeEEEEEECCEECcCCccccccCCCCcEEEeCCccceecCH
Confidence 455787753334567766 68885 2211 2689999999999985
No 59
>PF12508 DUF3714: Protein of unknown function (DUF3714) ; InterPro: IPR022187 Proteins in this entry are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage.
Probab=34.59 E-value=1.3e+02 Score=27.22 Aligned_cols=52 Identities=17% Similarity=0.227 Sum_probs=39.4
Q ss_pred CcceEEEEeEEEEcCeEeeccccccccccCCCCCeEEeccccceecCHHHHHHHHHHHHHhcc
Q 044303 249 SAEYFIGVKSILISGNVVPLNKSLLSINKEGFGGTKISTVFPYTVLETSIYKAFVKTFIKSYS 311 (428)
Q Consensus 249 ~~~y~v~l~~i~v~~~~l~~~~~~~~~~~~~~~~~iiDSGTs~~~lp~~~~~~l~~~l~~~~~ 311 (428)
...-.+.+++|.++|+.+++.-+.|. .| |-.-+|+|........+.+.+.+.
T Consensus 100 ~~Rl~i~I~SI~~~~~IipV~L~vYD----------~D-G~eGlyVP~s~~~~a~ke~~~~~~ 151 (200)
T PF12508_consen 100 GQRLLITITSIEYGGNIIPVELSVYD----------LD-GQEGLYVPNSAEREAAKEMAANAG 151 (200)
T ss_pred ccEEEEEEEEEEECCEEEEEEEEEEC----------CC-CCcccccCCchHHHHHHHHHHHHh
Confidence 35788999999999999887655543 12 677799999888777777766553
No 60
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=32.42 E-value=68 Score=29.82 Aligned_cols=45 Identities=11% Similarity=0.102 Sum_probs=31.5
Q ss_pred CCceEEEEeeCCCCceEEEE---EEecC-----CCceEEEEEecCCCceeecCC
Q 044303 29 PKALVVPVTKDSSTLQYLTQ---IQQRT-----PLVPVKLTLDLGGGFLWVNCE 74 (428)
Q Consensus 29 ~~~~~~Pl~~~~~~~~Y~~~---i~iGt-----P~Q~~~v~~DTGSs~~wv~~~ 74 (428)
.+...+|+... ....|.+. |.+|. ......++||||++.+|+|..
T Consensus 167 ~~~~~~p~~~~-~~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt~~~~lp~~ 219 (283)
T cd05471 167 GDLTYTPVVSN-GPGYWQVPLDGISVGGKSVISSSGGGGAIVDSGTSLIYLPSS 219 (283)
T ss_pred CceEEEecCCC-CCCEEEEEeCeEEECCceeeecCCCcEEEEecCCCCEeCCHH
Confidence 34566677653 24566655 56775 246789999999999999854
No 61
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=31.57 E-value=81 Score=29.44 Aligned_cols=46 Identities=13% Similarity=0.150 Sum_probs=30.3
Q ss_pred CCceEEEEeeCC-CCceEEEE---EEecCC-------------CceEEEEEecCCCceeecCC
Q 044303 29 PKALVVPVTKDS-STLQYLTQ---IQQRTP-------------LVPVKLTLDLGGGFLWVNCE 74 (428)
Q Consensus 29 ~~~~~~Pl~~~~-~~~~Y~~~---i~iGtP-------------~Q~~~v~~DTGSs~~wv~~~ 74 (428)
.+..-+|+.... ....|.++ |.||.- .....++||||++.+.+|..
T Consensus 131 ~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGTs~~~lp~~ 193 (265)
T cd05476 131 SGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTLTYLPDP 193 (265)
T ss_pred CCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCCcceEcCcc
Confidence 445667776642 13456554 788851 23456899999999999853
No 62
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=31.32 E-value=60 Score=25.92 Aligned_cols=26 Identities=19% Similarity=0.195 Sum_probs=19.8
Q ss_pred EEEEecCCCc----eEEEEEecCCCcee-ec
Q 044303 47 TQIQQRTPLV----PVKLTLDLGGGFLW-VN 72 (428)
Q Consensus 47 ~~i~iGtP~Q----~~~v~~DTGSs~~w-v~ 72 (428)
+++.|..|.| ++.+++|||.+..- ++
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~ 32 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFLLVP 32 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEEecC
Confidence 5788888733 67899999998664 55
No 63
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=31.23 E-value=34 Score=26.87 Aligned_cols=23 Identities=35% Similarity=0.457 Sum_probs=9.7
Q ss_pred CcchhhHHHH--HHHHHHHHhhcccc
Q 044303 1 MALAYNFLFF--CLSLVFFISHSEAK 24 (428)
Q Consensus 1 ~~~~~~~~~~--~~~~~~~~~~~~~~ 24 (428)
|+++- |+|| +|+++|+++..++|
T Consensus 1 MaSK~-~llL~l~LA~lLlisSevaa 25 (95)
T PF07172_consen 1 MASKA-FLLLGLLLAALLLISSEVAA 25 (95)
T ss_pred CchhH-HHHHHHHHHHHHHHHhhhhh
Confidence 66642 3333 33333444444444
No 64
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=28.16 E-value=85 Score=29.51 Aligned_cols=42 Identities=10% Similarity=0.001 Sum_probs=28.5
Q ss_pred CceEEEEeeCCCCceEEEE---EEecCC----CceEEEEEecCCCceeecC
Q 044303 30 KALVVPVTKDSSTLQYLTQ---IQQRTP----LVPVKLTLDLGGGFLWVNC 73 (428)
Q Consensus 30 ~~~~~Pl~~~~~~~~Y~~~---i~iGtP----~Q~~~v~~DTGSs~~wv~~ 73 (428)
+..-+|+..+ ...|.++ |.||.- .....++||||++.+++|-
T Consensus 166 ~l~~~pi~~~--~~~w~v~l~~i~v~~~~~~~~~~~~~iiDSGTs~~~lP~ 214 (278)
T cd06097 166 EISWTPVDNS--SGFWQFTSTSYTVGGDAPWSRSGFSAIADTGTTLILLPD 214 (278)
T ss_pred ceEEEEccCC--CcEEEEEEeeEEECCcceeecCCceEEeecCCchhcCCH
Confidence 3456666542 3456555 567742 3567899999999999984
No 65
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=27.81 E-value=85 Score=29.65 Aligned_cols=44 Identities=14% Similarity=0.245 Sum_probs=28.7
Q ss_pred ceEEEEeeCCCC---ceEEEE---EEecCC-------CceEEEEEecCCCceeecCC
Q 044303 31 ALVVPVTKDSST---LQYLTQ---IQQRTP-------LVPVKLTLDLGGGFLWVNCE 74 (428)
Q Consensus 31 ~~~~Pl~~~~~~---~~Y~~~---i~iGtP-------~Q~~~v~~DTGSs~~wv~~~ 74 (428)
...+|+..+... ..|.++ |.+|.. .....++||||++.+++|-.
T Consensus 139 ~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~iiDSGt~~~~lP~~ 195 (295)
T cd05474 139 LVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTLLSKNLPALLDSGTTLTYLPSD 195 (295)
T ss_pred eEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCcccccCCCccEEECCCCccEeCCHH
Confidence 345666654321 455554 677752 34568899999999999854
No 66
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=27.41 E-value=62 Score=30.83 Aligned_cols=45 Identities=13% Similarity=0.060 Sum_probs=29.9
Q ss_pred CCceEEEEeeCCC-CceEEEE---EEecCCC--------ceEEEEEecCCCceeecC
Q 044303 29 PKALVVPVTKDSS-TLQYLTQ---IQQRTPL--------VPVKLTLDLGGGFLWVNC 73 (428)
Q Consensus 29 ~~~~~~Pl~~~~~-~~~Y~~~---i~iGtP~--------Q~~~v~~DTGSs~~wv~~ 73 (428)
.+..-+|+..+.. ...|.++ |.||.-. ....+++|||++++++|.
T Consensus 131 g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~lp~ 187 (299)
T cd05472 131 AGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPP 187 (299)
T ss_pred CCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceecCH
Confidence 3456677766432 3467666 6887521 233689999999999984
No 67
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=24.42 E-value=99 Score=25.87 Aligned_cols=29 Identities=10% Similarity=0.220 Sum_probs=24.2
Q ss_pred ceEEEEEEecCCCceEEEEEecCCCceeecC
Q 044303 43 LQYLTQIQQRTPLVPVKLTLDLGGGFLWVNC 73 (428)
Q Consensus 43 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~ 73 (428)
..-.+.+.|.+ ++..++||+|++...+..
T Consensus 20 ~vi~g~~~I~~--~~~~vLiDSGAThsFIs~ 48 (135)
T PF08284_consen 20 DVITGTFLINS--IPASVLIDSGATHSFISS 48 (135)
T ss_pred CeEEEEEEecc--EEEEEEEecCCCcEEccH
Confidence 45677788888 999999999999888753
No 68
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=24.14 E-value=72 Score=30.76 Aligned_cols=31 Identities=10% Similarity=-0.110 Sum_probs=22.5
Q ss_pred ceEEEE---EEecCC-----CceEEEEEecCCCceeecC
Q 044303 43 LQYLTQ---IQQRTP-----LVPVKLTLDLGGGFLWVNC 73 (428)
Q Consensus 43 ~~Y~~~---i~iGtP-----~Q~~~v~~DTGSs~~wv~~ 73 (428)
..|.++ |.||.. .+...++||||++.+++|-
T Consensus 188 ~~w~v~l~~i~v~g~~~~~~~~~~~aivDTGTs~~~lP~ 226 (317)
T cd06098 188 GYWQFEMGDVLIGGKSTGFCAGGCAAIADSGTSLLAGPT 226 (317)
T ss_pred cEEEEEeCeEEECCEEeeecCCCcEEEEecCCcceeCCH
Confidence 355555 677752 2346799999999999984
No 69
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=23.68 E-value=94 Score=30.08 Aligned_cols=39 Identities=13% Similarity=0.216 Sum_probs=26.5
Q ss_pred eEEEEeeCCCCceEEEE---EEecCC------CceEEEEEecCCCceeecC
Q 044303 32 LVVPVTKDSSTLQYLTQ---IQQRTP------LVPVKLTLDLGGGFLWVNC 73 (428)
Q Consensus 32 ~~~Pl~~~~~~~~Y~~~---i~iGtP------~Q~~~v~~DTGSs~~wv~~ 73 (428)
.-+|+... ..|.++ |.||.. .....+++|||++++++|.
T Consensus 200 ~~~p~~~~---~~y~v~l~~i~vg~~~~~~~~~~~~~aivDSGTs~~~lp~ 247 (326)
T cd06096 200 VWTPITRK---YYYYVKLEGLSVYGTTSNSGNTKGLGMLVDSGSTLSHFPE 247 (326)
T ss_pred eEEeccCC---ceEEEEEEEEEEcccccceecccCCCEEEeCCCCcccCCH
Confidence 34455542 466555 677753 2456789999999999985
No 70
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=23.55 E-value=1.2e+02 Score=30.32 Aligned_cols=43 Identities=14% Similarity=0.142 Sum_probs=29.9
Q ss_pred ceEEEEeeCCCCceEEEE---EEecC----CCc-----eEEEEEecCCCceeecCC
Q 044303 31 ALVVPVTKDSSTLQYLTQ---IQQRT----PLV-----PVKLTLDLGGGFLWVNCE 74 (428)
Q Consensus 31 ~~~~Pl~~~~~~~~Y~~~---i~iGt----P~Q-----~~~v~~DTGSs~~wv~~~ 74 (428)
..-+||..... ..|.+. |.||. ++- ...+++|||++++++|.+
T Consensus 231 l~~tPl~~~~~-~~y~v~l~~I~vgg~~~~~~~~~~~~~~~~iiDSGTs~t~lp~~ 285 (398)
T KOG1339|consen 231 LTYTPLLSNPS-TYYQVNLDGISVGGKRPIGSSLFCTDGGGAIIDSGTSLTYLPTS 285 (398)
T ss_pred eEEEeeccCCC-ccEEEEEeEEEECCccCCCcceEecCCCCEEEECCcceeeccHH
Confidence 45788888543 466655 66885 322 245799999999999853
No 71
>PF15240 Pro-rich: Proline-rich
Probab=22.78 E-value=51 Score=29.03 Aligned_cols=18 Identities=22% Similarity=0.362 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHhhccccc
Q 044303 8 LFFCLSLVFFISHSEAKT 25 (428)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~ 25 (428)
||++||.+++++++.|..
T Consensus 1 MLlVLLSvALLALSSAQ~ 18 (179)
T PF15240_consen 1 MLLVLLSVALLALSSAQS 18 (179)
T ss_pred ChhHHHHHHHHHhhhccc
Confidence 344555555555566664
No 72
>cd00303 retropepsin_like Retropepsins; pepsin-like aspartate proteases. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements, as well as eukaryotic dna-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples
Probab=20.98 E-value=1.6e+02 Score=20.60 Aligned_cols=20 Identities=10% Similarity=0.092 Sum_probs=16.4
Q ss_pred CeEEeccccceecCHHHHHH
Q 044303 282 GTKISTVFPYTVLETSIYKA 301 (428)
Q Consensus 282 ~~iiDSGTs~~~lp~~~~~~ 301 (428)
.+++|||.+...+..+.+..
T Consensus 11 ~~liDtgs~~~~~~~~~~~~ 30 (92)
T cd00303 11 RALVDSGASVNFISESLAKK 30 (92)
T ss_pred EEEEcCCCcccccCHHHHHH
Confidence 37899999999999877653
No 73
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=20.35 E-value=1.2e+02 Score=29.47 Aligned_cols=40 Identities=13% Similarity=0.052 Sum_probs=26.7
Q ss_pred ceEEEEeeCCCCceEEEE---EEecCC---CceEEEEEecCCCceeecC
Q 044303 31 ALVVPVTKDSSTLQYLTQ---IQQRTP---LVPVKLTLDLGGGFLWVNC 73 (428)
Q Consensus 31 ~~~~Pl~~~~~~~~Y~~~---i~iGtP---~Q~~~v~~DTGSs~~wv~~ 73 (428)
...+|+.. ...|.++ +.+|.- .++..++||||++.+++|-
T Consensus 181 l~~~p~~~---~~~~~v~~~~i~v~~~~~~~~~~~~iiDSGtt~~~lP~ 226 (329)
T cd05485 181 FTYLPVTR---KGYWQFKMDSVSVGEGEFCSGGCQAIADTGTSLIAGPV 226 (329)
T ss_pred eEEEEcCC---ceEEEEEeeEEEECCeeecCCCcEEEEccCCcceeCCH
Confidence 34556543 3456555 567752 2345799999999999984
No 74
>PF15409 PH_8: Pleckstrin homology domain
Probab=20.25 E-value=2.5e+02 Score=21.71 Aligned_cols=29 Identities=14% Similarity=0.051 Sum_probs=23.1
Q ss_pred CCCeEEeccccceec---CHHHHHHHHHHHHH
Q 044303 280 FGGTKISTVFPYTVL---ETSIYKAFVKTFIK 308 (428)
Q Consensus 280 ~~~~iiDSGTs~~~l---p~~~~~~l~~~l~~ 308 (428)
...+.||||....+| .++.|+.-+++|+.
T Consensus 56 ~~~I~idsg~~i~hLKa~s~~~f~~Wv~aL~~ 87 (89)
T PF15409_consen 56 SRRIDIDSGDEIWHLKAKSQEDFQRWVSALQK 87 (89)
T ss_pred CCEEEEEcCCeEEEEEcCCHHHHHHHHHHHHh
Confidence 356889999998887 46788888888864
Done!