BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044305
(195 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2G3M|A Chain A, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|B Chain B, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|C Chain C, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|D Chain D, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|E Chain E, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|F Chain F, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3N|A Chain A, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|B Chain B, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|C Chain C, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|D Chain D, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|E Chain E, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|F Chain F, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
Length = 693
Score = 97.1 bits (240), Expect = 6e-21, Method: Composition-based stats.
Identities = 58/192 (30%), Positives = 90/192 (46%), Gaps = 33/192 (17%)
Query: 25 VLKDFIYNGVDGIWNDMNEPAVFQS-------------------VTKTMPESNIH--RGD 63
++ +++ GVDGIW DMNEP F + T P++ +H RG
Sbjct: 305 LISEWLSQGVDGIWLDMNEPTDFSRAIEIRDVLSSLPVQFRDDRLVTTFPDNVVHYLRGK 364
Query: 64 DEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNV 123
H N Y + A +T++G + + +++ F+L+RAG+ G QRYA WTGDN
Sbjct: 365 R-----VKHEKVRNAYPLYEAMATFKGFRTSHRNE-IFILSRAGYAGIQRYAFIWTGDNT 418
Query: 124 SNWEHLHMSISMVXXXXXXXXXXXXXDIGGFDG------NATPRLFGRWMGIGAMFPFCR 177
+W+ L + + +V DIGGF G + + L ++ + FPF R
Sbjct: 419 PSWDDLKLQLQLVLGLSISGVPFVGCDIGGFQGRNFAEIDNSMDLLVKYYALALFFPFYR 478
Query: 178 GHTESDSIDHEP 189
H +D ID EP
Sbjct: 479 SHKATDGIDTEP 490
Score = 30.4 bits (67), Expect = 0.67, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 3 FMPPKWSLGYNQCRWSYDSEKRVLK 27
F+PP W+ GY R+SY + +V++
Sbjct: 170 FLPPMWAFGYMISRYSYYPQDKVVE 194
>pdb|2QLY|A Chain A, Crystral Structure Of The N-Terminal Subunit Of Human
Maltase- Glucoamylase
pdb|2QMJ|A Chain A, Crystral Structure Of The N-Terminal Subunit Of Human
Maltase- Glucoamylase In Complex With Acarbose
pdb|3CTT|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Casuarine
Length = 870
Score = 90.5 bits (223), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 62/120 (51%)
Query: 76 HNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISM 135
HN+YG MA +T E K +KR F+LTR+ F GS ++AA W GDN + W+ L SI
Sbjct: 497 HNLYGYSMAVATAEAAKTVFPNKRSFILTRSTFAGSGKFAAHWLGDNTATWDDLRWSIPG 556
Query: 136 VXXXXXXXXXXXXXDIGGFDGNATPRLFGRWMGIGAMFPFCRGHTESDSIDHEPWSFGEE 195
V DI GF + L RWM +GA +PF R H D +P SFG +
Sbjct: 557 VLEFNLFGIPMVGPDICGFALDTPEELCRRWMQLGAFYPFSRNHNGQGYKDQDPASFGAD 616
>pdb|3L4T|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Bj2661
pdb|3L4U|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With De-O-Sulfonated Kotalanol
pdb|3L4V|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Kotalanol
pdb|3L4W|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Miglitol
pdb|3L4X|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Nr4-8
pdb|3L4Y|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Nr4-8ii
pdb|3L4Z|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Salacinol
Length = 875
Score = 90.5 bits (223), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 62/120 (51%)
Query: 76 HNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISM 135
HN+YG MA +T E K +KR F+LTR+ F GS ++AA W GDN + W+ L SI
Sbjct: 497 HNLYGYSMAVATAEAAKTVFPNKRSFILTRSTFAGSGKFAAHWLGDNTATWDDLRWSIPG 556
Query: 136 VXXXXXXXXXXXXXDIGGFDGNATPRLFGRWMGIGAMFPFCRGHTESDSIDHEPWSFGEE 195
V DI GF + L RWM +GA +PF R H D +P SFG +
Sbjct: 557 VLEFNLFGIPMVGPDICGFALDTPEELCRRWMQLGAFYPFSRNHNGQGYKDQDPASFGAD 616
>pdb|3LPO|A Chain A, Crystal Structure Of The N-Terminal Domain Of
Sucrase-Isomal
pdb|3LPO|B Chain B, Crystal Structure Of The N-Terminal Domain Of
Sucrase-Isomal
pdb|3LPO|C Chain C, Crystal Structure Of The N-Terminal Domain Of
Sucrase-Isomal
pdb|3LPO|D Chain D, Crystal Structure Of The N-Terminal Domain Of
Sucrase-Isomal
pdb|3LPP|A Chain A, Crystal Complex Of N-Terminal Sucrase-Isomaltase With
Kotala
pdb|3LPP|B Chain B, Crystal Complex Of N-Terminal Sucrase-Isomaltase With
Kotala
pdb|3LPP|C Chain C, Crystal Complex Of N-Terminal Sucrase-Isomaltase With
Kotala
pdb|3LPP|D Chain D, Crystal Complex Of N-Terminal Sucrase-Isomaltase With
Kotala
Length = 898
Score = 87.8 bits (216), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 86/181 (47%), Gaps = 24/181 (13%)
Query: 35 DGIWNDMNEPAVFQSVTKTMPESNIHRGD--------------------DEIGGCQNHSY 74
DG+W DMNE + F + + N+++ + D +
Sbjct: 467 DGLWIDMNEVSSF--IQGSTKGCNVNKLNYPPFTPDILDKLMYSKTICMDAVQNWGKQYD 524
Query: 75 YHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSIS 134
H++YG MA +T + ++ +KR F+LTR+ F GS R+AA W GDN ++WE + SI+
Sbjct: 525 VHSLYGYSMAIATEQAVQKVFPNKRSFILTRSTFAGSGRHAAHWLGDNTASWEQMEWSIT 584
Query: 135 MVXXXXXXXXXXXXXDIGGFDGNATPRLFGRWMGIGAMFPFCRGHTESDSIDHE-PWSFG 193
+ DI GF T L RWM +GA +PF R H SD +H+ P FG
Sbjct: 585 GMLEFSLFGIPLVGADICGFVAETTEELCRRWMQLGAFYPFSRNH-NSDGYEHQDPAFFG 643
Query: 194 E 194
+
Sbjct: 644 Q 644
>pdb|3M46|A Chain A, The Crystal Structure Of The D73a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
pdb|3M46|B Chain B, The Crystal Structure Of The D73a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
Length = 666
Score = 87.0 bits (214), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 82/196 (41%), Gaps = 32/196 (16%)
Query: 29 FIYNGVDGIWNDMNEPAVFQSVTKTMP------------ESNIH------RGDDEIGGCQ 70
I G++G WNDMNEPA+F S E IH + D + +
Sbjct: 299 LIDQGIEGFWNDMNEPAIFYSSEGLAEAKEFAGEFAKDTEGKIHPWAMQAKMKDIVNSPE 358
Query: 71 N--------------HSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAA 116
+ H HN++G M R+ E + D +KR + +R+ +IG RY
Sbjct: 359 DYKRFYHNVNGKKIRHDKVHNLFGYNMTRAAGEAFERIDPEKRFLMFSRSSYIGMHRYGG 418
Query: 117 TWTGDNVSNWEHLHMSISMVXXXXXXXXXXXXXDIGGFDGNATPRLFGRWMGIGAMFPFC 176
W GDN S W H+ +++ M+ D+GGF + T L R++ +G P
Sbjct: 419 IWMGDNKSWWSHILLNLKMLPSLNMCGFMYTGADLGGFGDDTTRDLLLRFLALGVFTPLM 478
Query: 177 RGHTESDSIDHEPWSF 192
R H + + E + F
Sbjct: 479 RDHAAEGTREQECYQF 494
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 3 FMPPKWSLGYNQCRWSYDSE---KRVLKDFIYN--GVDGIWNDMNEPAVFQSVT 51
++PPK++ G+ Q RW Y ++ + V K + N +D I+ D++ F+ T
Sbjct: 158 YIPPKFAFGFGQSRWGYTTKEDFRAVAKGYRENHIPIDMIYMDIDYMQDFKDFT 211
>pdb|3PHA|A Chain A, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Gh31 Family) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
pdb|3PHA|B Chain B, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Gh31 Family) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
pdb|3PHA|C Chain C, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Gh31 Family) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
pdb|3PHA|D Chain D, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Gh31 Family) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
Length = 667
Score = 86.7 bits (213), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 82/196 (41%), Gaps = 32/196 (16%)
Query: 29 FIYNGVDGIWNDMNEPAVFQSVTKTMP------------ESNIH------RGDDEIGGCQ 70
I G++G WNDMNEPA+F S E IH + D + +
Sbjct: 299 LIDQGIEGFWNDMNEPAIFYSSEGLAEAKEFAGEFAKDTEGKIHPWAMQAKMKDIVNSPE 358
Query: 71 N--------------HSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAA 116
+ H HN++G M R+ E + D +KR + +R+ +IG RY
Sbjct: 359 DYKRFYHNVNGKKIRHDKVHNLFGYNMTRAAGEAFERIDPEKRFLMFSRSSYIGMHRYGG 418
Query: 117 TWTGDNVSNWEHLHMSISMVXXXXXXXXXXXXXDIGGFDGNATPRLFGRWMGIGAMFPFC 176
W GDN S W H+ +++ M+ D+GGF + T L R++ +G P
Sbjct: 419 IWMGDNKSWWSHILLNLKMLPSLNMCGFMYTGADLGGFGDDTTRDLLLRFLALGVFTPLM 478
Query: 177 RGHTESDSIDHEPWSF 192
R H + + E + F
Sbjct: 479 RDHAAEGTREQECYQF 494
Score = 26.9 bits (58), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 3 FMPPKWSLGYNQCRWSYDSE---KRVLKDFIYN--GVDGIWNDMNEPAVFQSVT 51
++PPK++ G+ Q R+ Y ++ + V K + N +D I+ D++ F+ T
Sbjct: 158 YIPPKFAFGFGQSRYGYTTKEDFRAVAKGYRENHIPIDMIYMDIDYMQDFKDFT 211
>pdb|3NUK|A Chain A, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Family 31) From Ruminococcus Obeum
Atcc 29174
pdb|3NUK|B Chain B, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Family 31) From Ruminococcus Obeum
Atcc 29174
Length = 666
Score = 86.7 bits (213), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 82/196 (41%), Gaps = 32/196 (16%)
Query: 29 FIYNGVDGIWNDMNEPAVFQSVTKTMP------------ESNIH------RGDDEIGGCQ 70
I G++G WNDMNEPA+F S E IH + D + +
Sbjct: 299 LIDQGIEGFWNDMNEPAIFYSSEGLAEAKEFAGEFAKDTEGKIHPWAMQAKMKDIVNSPE 358
Query: 71 N--------------HSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAA 116
+ H HN++G M R+ E + D +KR + +R+ +IG RY
Sbjct: 359 DYKRFYHNVNGKKIRHDKVHNLFGYNMTRAAGEAFERIDPEKRFLMFSRSSYIGMHRYGG 418
Query: 117 TWTGDNVSNWEHLHMSISMVXXXXXXXXXXXXXDIGGFDGNATPRLFGRWMGIGAMFPFC 176
W GDN S W H+ +++ M+ D+GGF + T L R++ +G P
Sbjct: 419 IWMGDNKSWWSHILLNLKMLPSLNMCGFMYTGADLGGFGDDTTRDLLLRFLALGVFTPLM 478
Query: 177 RGHTESDSIDHEPWSF 192
R H + + E + F
Sbjct: 479 RDHAAEGTREQECYQF 494
Score = 26.9 bits (58), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 3 FMPPKWSLGYNQCRWSYDSE---KRVLKDFIYN--GVDGIWNDMNEPAVFQSVT 51
++PPK++ G+ Q R+ Y ++ + V K + N +D I+ D++ F+ T
Sbjct: 158 YIPPKFAFGFGQSRYGYTTKEDFRAVAKGYRENHIPIDMIYMDIDYMQDFKDFT 211
>pdb|3NSX|A Chain A, The Crystal Structure Of The The Crystal Structure Of The
D420a Mutant Of The Alpha-Glucosidase (Family 31) From
Ruminococcus Obeum Atcc 29174
pdb|3NSX|B Chain B, The Crystal Structure Of The The Crystal Structure Of The
D420a Mutant Of The Alpha-Glucosidase (Family 31) From
Ruminococcus Obeum Atcc 29174
Length = 666
Score = 84.0 bits (206), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 81/196 (41%), Gaps = 32/196 (16%)
Query: 29 FIYNGVDGIWNDMNEPAVFQSVTKTMP------------ESNIH------RGDDEIGGCQ 70
I G++G WNDMNEPA+F S E IH + D + +
Sbjct: 299 LIDQGIEGFWNDMNEPAIFYSSEGLAEAKEFAGEFAKDTEGKIHPWAMQAKMKDIVNSPE 358
Query: 71 N--------------HSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAA 116
+ H HN++G M R+ E + D +KR + +R+ +IG RY
Sbjct: 359 DYKRFYHNVNGKKIRHDKVHNLFGYNMTRAAGEAFERIDPEKRFLMFSRSSYIGMHRYGG 418
Query: 117 TWTGDNVSNWEHLHMSISMVXXXXXXXXXXXXXDIGGFDGNATPRLFGRWMGIGAMFPFC 176
W G N S W H+ +++ M+ D+GGF + T L R++ +G P
Sbjct: 419 IWMGANKSWWSHILLNLKMLPSLNMCGFMYTGADLGGFGDDTTRDLLLRFLALGVFTPLM 478
Query: 177 RGHTESDSIDHEPWSF 192
R H + + E + F
Sbjct: 479 RDHAAEGTREQECYQF 494
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 3 FMPPKWSLGYNQCRWSYDSE---KRVLKDFIYN--GVDGIWNDMNEPAVFQSVT 51
++PPK++ G+ Q RW Y ++ + V K + N +D I+ D++ F+ T
Sbjct: 158 YIPPKFAFGFGQSRWGYTTKEDFRAVAKGYRENHIPIDMIYMDIDYMQDFKDFT 211
>pdb|3M6D|A Chain A, The Crystal Structure Of The D307a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
pdb|3M6D|B Chain B, The Crystal Structure Of The D307a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
pdb|3MKK|A Chain A, The Crystal Structure Of The D307a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
In Complex With Isomaltose
pdb|3MKK|B Chain B, The Crystal Structure Of The D307a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
In Complex With Isomaltose
pdb|3POC|A Chain A, The Crystal Structure Of The D307a Mutant Of
Alpha-Glucosidase (Family 31) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
pdb|3POC|B Chain B, The Crystal Structure Of The D307a Mutant Of
Alpha-Glucosidase (Family 31) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
Length = 666
Score = 84.0 bits (206), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 81/196 (41%), Gaps = 32/196 (16%)
Query: 29 FIYNGVDGIWNDMNEPAVFQSVTKTMP------------ESNIH------RGDDEIGGCQ 70
I G++G WN MNEPA+F S E IH + D + +
Sbjct: 299 LIDQGIEGFWNAMNEPAIFYSSEGLAEAKEFAGEFAKDTEGKIHPWAMQAKMKDIVNSPE 358
Query: 71 N--------------HSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAA 116
+ H HN++G M R+ E + D +KR + +R+ +IG RY
Sbjct: 359 DYKRFYHNVNGKKIRHDKVHNLFGYNMTRAAGEAFERIDPEKRFLMFSRSSYIGMHRYGG 418
Query: 117 TWTGDNVSNWEHLHMSISMVXXXXXXXXXXXXXDIGGFDGNATPRLFGRWMGIGAMFPFC 176
W GDN S W H+ +++ M+ D+GGF + T L R++ +G P
Sbjct: 419 IWMGDNKSWWSHILLNLKMLPSLNMCGFMYTGADLGGFGDDTTRDLLLRFLALGVFTPLM 478
Query: 177 RGHTESDSIDHEPWSF 192
R H + + E + F
Sbjct: 479 RDHAAEGTREQECYQF 494
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 3 FMPPKWSLGYNQCRWSYDSE---KRVLKDFIYN--GVDGIWNDMNEPAVFQSVT 51
++PPK++ G+ Q RW Y ++ + V K + N +D I+ D++ F+ T
Sbjct: 158 YIPPKFAFGFGQSRWGYTTKEDFRAVAKGYRENHIPIDMIYMDIDYMQDFKDFT 211
>pdb|3N04|A Chain A, The Crystal Structure Of The Alpha-Glucosidase (Family 31)
From Ruminococcus Obeum Atcc 29174
pdb|3N04|B Chain B, The Crystal Structure Of The Alpha-Glucosidase (Family 31)
From Ruminococcus Obeum Atcc 29174
Length = 666
Score = 80.1 bits (196), Expect = 7e-16, Method: Composition-based stats.
Identities = 51/196 (26%), Positives = 80/196 (40%), Gaps = 32/196 (16%)
Query: 29 FIYNGVDGIWNDMNEPAVFQSVT------------------KTMPESNIHRGDDEIGGCQ 70
I G++G WND NEPA+F S K P + + D + +
Sbjct: 299 LIDQGIEGFWNDXNEPAIFYSSEGLAEAKEFAGEFAKDTEGKIHPWAXQAKXKDIVNSPE 358
Query: 71 N--------------HSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAA 116
+ H HN++G R+ E + D +KR +R+ +IG RY
Sbjct: 359 DYKRFYHNVNGKKIRHDKVHNLFGYNXTRAAGEAFERIDPEKRFLXFSRSSYIGXHRYGG 418
Query: 117 TWTGDNVSNWEHLHMSISMVXXXXXXXXXXXXXDIGGFDGNATPRLFGRWMGIGAMFPFC 176
W GDN S W H+ +++ + D+GGF + T L R++ +G P
Sbjct: 419 IWXGDNKSWWSHILLNLKXLPSLNXCGFXYTGADLGGFGDDTTRDLLLRFLALGVFTPLX 478
Query: 177 RGHTESDSIDHEPWSF 192
R H + + E + F
Sbjct: 479 RDHAAEGTREQECYQF 494
Score = 29.6 bits (65), Expect = 1.0, Method: Composition-based stats.
Identities = 8/21 (38%), Positives = 16/21 (76%)
Query: 3 FMPPKWSLGYNQCRWSYDSEK 23
++PPK++ G+ Q RW Y +++
Sbjct: 158 YIPPKFAFGFGQSRWGYTTKE 178
>pdb|3TON|A Chain A, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase
pdb|3TON|B Chain B, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase
pdb|3TOP|A Chain A, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase In Complex With Acarbose
pdb|3TOP|B Chain B, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase In Complex With Acarbose
Length = 908
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 76/183 (41%), Gaps = 27/183 (14%)
Query: 35 DGIWNDMNEPAVF-----------------------QSVTKTMPESNIHRGDDEI---GG 68
DG+W DMNEP+ F +S + + + +I G
Sbjct: 464 DGMWIDMNEPSSFVNGAVSPGCRDASLNHPPYMPHLESRDRGLSSKTLCMESQQILPDGS 523
Query: 69 CQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEH 128
H HN+YG R TYE ++ +R V+TR+ F S R+A W GDN + W+
Sbjct: 524 LVQHYNVHNLYGWSQTRPTYEAVQEV-TGQRGVVITRSTFPSSGRWAGHWLGDNTAAWDQ 582
Query: 129 LHMSISMVXXXXXXXXXXXXXDIGGFDGNATPRLFGRWMGIGAMFPFCRGHTESDSIDHE 188
L SI + DI GF +A + RWM +GA +PF R H + +
Sbjct: 583 LKKSIIGMMEFSLFGISYTGADICGFFQDAEYEMCVRWMQLGAFYPFSRNHNTIGTRRQD 642
Query: 189 PWS 191
P S
Sbjct: 643 PVS 645
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 4 MPPKWSLGYNQCRWSY--DSEKRVLKD 28
M P WSLG+ CR+ Y DSE L D
Sbjct: 287 MVPYWSLGFQLCRYGYQNDSEIASLYD 313
>pdb|4B9Y|A Chain A, Crystal Structure Of Apo Agd31b, Alpha-transglucosylase In
Glycoside Hydrolase Family 31
pdb|4B9Z|A Chain A, Crystal Structure Of Agd31b, Alpha-transglucosylase,
Complexed With Acarbose
pdb|4BA0|A Chain A, Crystal Structure Of Agd31b, Alpha-transglucosylase,
Complexed With 5f-alpha-glcf
Length = 817
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 72/174 (41%), Gaps = 18/174 (10%)
Query: 25 VLKDFIYNGVDGIWNDMNEPAVFQSVTKTMPESNIHRGDDEIGGCQNHSYYHNVYGMLMA 84
+ KD GV G W D+ EP + PE H IG HN YG A
Sbjct: 397 IYKDLSKQGVAGWWGDLGEPEMH-------PEDTQH----AIGDADT---VHNAYGHRWA 442
Query: 85 RSTYEGMKLADKDKRPFVLTRAGFIGSQRYAAT-WTGDNVSNWEHLHMSISMVXXXXXXX 143
Y+ + RPF++ RAGF+GSQRY WTGD W L + +
Sbjct: 443 EMLYQQQLDQFPELRPFIMMRAGFVGSQRYGMIPWTGDVSRTWGGLASQVELALQMSLLG 502
Query: 144 XXXXXXDIGGF-DGNATPR-LFGRWMGIGAMFPFCRGHTESDSIDHEPWSFGEE 195
D+GGF DG + ++ RW+ G P R H + D I EP EE
Sbjct: 503 FGYIHSDLGGFADGETLDKEMYIRWLQYGVFQPVYRPHGQ-DHIPSEPVFQDEE 555
>pdb|2XVG|A Chain A, Crystal Structure Of Alpha-Xylosidase (Gh31) From
Cellvibrio Japonicus
pdb|2XVK|A Chain A, Crystal Structure Of Alpha-Xylosidase (Gh31) From
Cellvibrio Japonicus In Complex With
5-Fluoro-Alpha-D-Xylopyranosyl Fluoride
pdb|2XVL|A Chain A, Crystal Structure Of Alpha-Xylosidase (Gh31) From
Cellvibrio Japonicus In Complex With Pentaerythritol
Propoxylate (5 4 Po Oh)
Length = 1020
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 69/188 (36%), Gaps = 37/188 (19%)
Query: 23 KRVLKDFIYNGVDGIWNDMNEPAVFQSVT----KTMPESNIHRGDDEIGGCQNHSYYHNV 78
K++ +G D W D EP + ++T K + N EI N
Sbjct: 565 KQIRDKINVHGFDAWWLDAVEPDIHSNLTFEKRKWLMTPNARGNGAEI---------FNA 615
Query: 79 YGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRY-AATWTGDNVSNWEHLHMSISMVX 137
Y + A Y+G D DKR F+LTR+GF G QR +A W+GD VS W + I+
Sbjct: 616 YAVPHAEGVYQGELATDGDKRSFILTRSGFGGIQRTGSAIWSGDIVSRWSDMKDQIAAGI 675
Query: 138 XXXXXXXXXXXXDIGGFDGNATPR-----------------------LFGRWMGIGAMFP 174
DIGGF R L RW GA P
Sbjct: 676 GTNLAGVTNWTFDIGGFTPEDRFRHGKKGFVGSWTALDAEQVDEWQELNTRWYQFGAFVP 735
Query: 175 FCRGHTES 182
R H ++
Sbjct: 736 LYRSHGQN 743
>pdb|2X2H|A Chain A, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase
pdb|2X2H|B Chain B, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase
pdb|2X2H|C Chain C, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase
pdb|2X2H|D Chain D, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase
pdb|2X2I|A Chain A, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Acarbose
pdb|2X2I|B Chain B, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Acarbose
pdb|2X2I|C Chain C, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Acarbose
pdb|2X2I|D Chain D, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Acarbose
pdb|2X2J|A Chain A, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Deoxynojirimycin
pdb|2X2J|B Chain B, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Deoxynojirimycin
pdb|2X2J|C Chain C, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Deoxynojirimycin
pdb|2X2J|D Chain D, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Deoxynojirimycin
Length = 1027
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 74/196 (37%), Gaps = 41/196 (20%)
Query: 33 GVDGIWNDMNEPAVFQSVT----KTMPESNIHRGDDEIGGCQNHSYYH------------ 76
G+D +W DM PA+ P+ N DD G N YH
Sbjct: 535 GLDFVWQDMTVPAMMPHKIGDDINVKPDGNWPNADDPSNGQYNWKTYHPQVLVTDMRYEN 594
Query: 77 ----------NVYGMLMARST-----YEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGD 121
N++ + ST E K +R ++++R G+IG+Q + W GD
Sbjct: 595 HGREPMVTQRNIHAYTLCESTRKEGIVENADTLTKFRRSYIISRGGYIGNQHFGGMWVGD 654
Query: 122 NVSNWEHLHMSISMVXXXXXXXXXXXXXDIGGF-----DGNATP---RLFGRWMGIGAMF 173
N + ++ M I+ DIGGF + TP L R++ G +
Sbjct: 655 NSTTSNYIQMMIANNINMNMSCLPLVGSDIGGFTSYDNENQRTPCTGDLMVRYVQAGCLL 714
Query: 174 PFCRGHTES--DSIDH 187
P+ R H + +S DH
Sbjct: 715 PWFRNHYDRWIESKDH 730
>pdb|1WE5|A Chain A, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|B Chain B, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|C Chain C, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|D Chain D, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|E Chain E, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|F Chain F, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
Length = 772
Score = 48.9 bits (115), Expect = 2e-06, Method: Composition-based stats.
Identities = 41/185 (22%), Positives = 71/185 (38%), Gaps = 25/185 (13%)
Query: 13 NQCRWSYDSEKRVLKDFIYNGVDGIWNDMNE--PAVFQSVTKTMPESNIHRGDDEIGGCQ 70
+ C+W D LK + GVD D E P Q + P+ +
Sbjct: 393 DACKWYADK----LKGLVAXGVDCFKTDFGERIPTDVQWFDGSDPQ-------------K 435
Query: 71 NHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLH 130
H++Y +Y L+ + +K ++ + R+ +G+Q++ W GD +N+E
Sbjct: 436 XHNHYAYIYNELV----WNVLKDTVGEEEAVLFARSASVGAQKFPVHWGGDCYANYESXA 491
Query: 131 MSISMVXXXXXXXXXXXXXDIGGFDGNATPRLFGRWMGIGAMFPFCRGHTESDSIDHEPW 190
S+ DIGGF+ A ++ RW G + R H PW
Sbjct: 492 ESLRGGLSIGLSGFGFWSHDIGGFENTAPAHVYKRWCAFGLLSSHSRLHGSKSY--RVPW 549
Query: 191 SFGEE 195
++ +E
Sbjct: 550 AYDDE 554
>pdb|1XSI|A Chain A, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|B Chain B, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|C Chain C, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|D Chain D, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|E Chain E, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|F Chain F, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|A Chain A, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|B Chain B, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|C Chain C, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|D Chain D, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|E Chain E, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|F Chain F, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSK|A Chain A, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|B Chain B, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|C Chain C, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|D Chain D, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|E Chain E, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|F Chain F, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
Length = 778
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 72/185 (38%), Gaps = 25/185 (13%)
Query: 13 NQCRWSYDSEKRVLKDFIYNGVDGIWNDMNE--PAVFQSVTKTMPESNIHRGDDEIGGCQ 70
+ C+W D LK + GVD D E P Q + P+ +
Sbjct: 393 DACKWYADK----LKGLVAMGVDCFKTDFGERIPTDVQWFDGSDPQ-------------K 435
Query: 71 NHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLH 130
H++Y +Y L+ + +K ++ + R+ +G+Q++ W GD +N+E +
Sbjct: 436 MHNHYAYIYNELV----WNVLKDTVGEEEAVLFARSASVGAQKFPVHWGGDCYANYESMA 491
Query: 131 MSISMVXXXXXXXXXXXXXDIGGFDGNATPRLFGRWMGIGAMFPFCRGHTESDSIDHEPW 190
S+ DIGGF+ A ++ RW G + R H PW
Sbjct: 492 ESLRGGLSIGLSGFGFWSHDIGGFENTAPAHVYKRWCAFGLLSSHSRLHGSKSY--RVPW 549
Query: 191 SFGEE 195
++ +E
Sbjct: 550 AYDDE 554
>pdb|2F2H|A Chain A, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|B Chain B, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|C Chain C, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|D Chain D, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|E Chain E, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|F Chain F, Structure Of The Yici Thiosugar Michaelis Complex
Length = 773
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 72/185 (38%), Gaps = 25/185 (13%)
Query: 13 NQCRWSYDSEKRVLKDFIYNGVDGIWNDMNE--PAVFQSVTKTMPESNIHRGDDEIGGCQ 70
+ C+W D LK + GVD D E P Q + P+ +
Sbjct: 393 DACKWYADK----LKGLVAMGVDCFKTDFGERIPTDVQWFDGSDPQ-------------K 435
Query: 71 NHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLH 130
H++Y +Y L+ + +K ++ + R+ +G+Q++ W GD +N+E +
Sbjct: 436 MHNHYAYIYNELV----WNVLKDTVGEEEAVLFARSASVGAQKFPVHWGGDCYANYESMA 491
Query: 131 MSISMVXXXXXXXXXXXXXDIGGFDGNATPRLFGRWMGIGAMFPFCRGHTESDSIDHEPW 190
S+ DIGGF+ A ++ RW G + R H PW
Sbjct: 492 ESLRGGLSIGLSGFGFWSHDIGGFENTAPAHVYKRWCAFGLLSSHSRLHGSKSY--RVPW 549
Query: 191 SFGEE 195
++ +E
Sbjct: 550 AYDDE 554
>pdb|1YC0|I Chain I, Short Form Hgfa With First Kunitz Domain From Hai-1
Length = 75
Score = 26.6 bits (57), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 16 RWSYDSEKRVLKDFIYNGVDGIWND 40
RW YD +++ K F+Y G G N+
Sbjct: 37 RWYYDPTEQICKSFVYGGCLGNKNN 61
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.457
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,424,376
Number of Sequences: 62578
Number of extensions: 248917
Number of successful extensions: 438
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 386
Number of HSP's gapped (non-prelim): 41
length of query: 195
length of database: 14,973,337
effective HSP length: 94
effective length of query: 101
effective length of database: 9,091,005
effective search space: 918191505
effective search space used: 918191505
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)